Query 004253
Match_columns 765
No_of_seqs 416 out of 3376
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 20:13:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02447 1,4-alpha-glucan-bran 100.0 8E-131 2E-135 1142.5 57.6 648 64-750 2-653 (758)
2 KOG0470 1,4-alpha-glucan branc 100.0 1E-110 3E-115 940.0 37.9 613 129-753 39-678 (757)
3 PLN03244 alpha-amylase; Provis 100.0 1E-104 3E-109 903.7 46.6 544 158-749 85-787 (872)
4 PLN02960 alpha-amylase 100.0 2E-100 3E-105 887.1 50.4 572 158-748 82-811 (897)
5 PRK12568 glycogen branching en 100.0 5.5E-85 1.2E-89 758.2 44.7 509 188-755 119-666 (730)
6 PRK14706 glycogen branching en 100.0 3.3E-84 7.2E-89 753.6 46.5 478 188-728 19-513 (639)
7 PRK14705 glycogen branching en 100.0 1.4E-84 3E-89 786.4 43.9 505 188-755 615-1160(1224)
8 PRK05402 glycogen branching en 100.0 1.1E-79 2.4E-84 731.0 50.1 537 147-754 84-660 (726)
9 PRK12313 glycogen branching en 100.0 8.9E-80 1.9E-84 723.5 47.5 507 188-753 19-563 (633)
10 TIGR01515 branching_enzym alph 100.0 4E-79 8.6E-84 714.0 45.6 509 188-755 9-552 (613)
11 COG0296 GlgB 1,4-alpha-glucan 100.0 1.5E-78 3.3E-83 689.7 39.4 448 188-670 18-479 (628)
12 TIGR02104 pulA_typeI pullulana 100.0 3.2E-71 6.9E-76 647.6 40.6 491 195-763 11-593 (605)
13 TIGR02402 trehalose_TreZ malto 100.0 1.2E-69 2.6E-74 624.9 42.2 475 205-755 1-540 (542)
14 TIGR02100 glgX_debranch glycog 100.0 1.5E-67 3.3E-72 619.2 41.7 479 194-730 5-575 (688)
15 PRK03705 glycogen debranching 100.0 2.9E-67 6.2E-72 612.7 40.3 474 193-729 9-566 (658)
16 TIGR02102 pullulan_Gpos pullul 100.0 1.4E-66 3E-71 626.8 45.8 500 174-729 307-900 (1111)
17 TIGR02103 pullul_strch alpha-1 100.0 5.9E-64 1.3E-68 594.1 39.8 465 195-728 127-789 (898)
18 PLN02877 alpha-amylase/limit d 100.0 1.3E-61 2.9E-66 572.1 43.0 463 195-728 214-858 (970)
19 PRK14510 putative bifunctional 100.0 4.4E-61 9.6E-66 592.2 40.6 475 194-731 14-576 (1221)
20 COG1523 PulA Type II secretory 100.0 3E-56 6.4E-61 515.2 32.6 478 193-729 17-593 (697)
21 PRK10785 maltodextrin glucosid 100.0 1.5E-53 3.2E-58 497.4 38.7 453 201-750 17-559 (598)
22 PRK10933 trehalose-6-phosphate 100.0 1.5E-51 3.2E-56 475.7 34.3 407 312-756 6-512 (551)
23 TIGR02456 treS_nterm trehalose 100.0 1E-51 2.2E-56 478.0 32.6 400 314-755 3-494 (539)
24 TIGR02403 trehalose_treC alpha 100.0 1.7E-51 3.6E-56 475.7 31.5 407 315-754 3-504 (543)
25 PRK09505 malS alpha-amylase; R 100.0 5.9E-49 1.3E-53 458.8 32.5 358 313-751 186-671 (683)
26 PRK09441 cytoplasmic alpha-amy 100.0 2.4E-45 5.1E-50 419.7 28.3 299 334-725 19-395 (479)
27 PF00128 Alpha-amylase: Alpha 100.0 4.9E-45 1.1E-49 390.6 17.1 278 334-666 1-312 (316)
28 PLN00196 alpha-amylase; Provis 100.0 1.2E-40 2.6E-45 372.6 28.8 307 332-748 39-391 (428)
29 PLN02361 alpha-amylase 100.0 4.1E-40 8.8E-45 364.4 29.3 294 335-734 27-355 (401)
30 PLN02784 alpha-amylase 100.0 1.9E-36 4.1E-41 351.3 27.7 282 316-663 498-819 (894)
31 TIGR03852 sucrose_gtfA sucrose 100.0 1.6E-36 3.6E-41 339.3 21.0 372 331-755 14-466 (470)
32 PRK13840 sucrose phosphorylase 100.0 5E-36 1.1E-40 337.3 24.6 347 334-728 17-436 (495)
33 COG0366 AmyA Glycosidases [Car 100.0 1.8E-35 3.9E-40 339.5 27.9 394 317-753 1-487 (505)
34 TIGR02455 TreS_stutzeri trehal 100.0 2.5E-32 5.5E-37 308.2 29.3 409 316-756 51-637 (688)
35 KOG0471 Alpha-amylase [Carbohy 100.0 2.8E-31 6.1E-36 306.0 24.0 166 315-483 16-219 (545)
36 TIGR02401 trehalose_TreY malto 100.0 1.5E-27 3.3E-32 280.2 26.7 81 334-415 13-93 (825)
37 PRK14511 maltooligosyl trehalo 99.9 3.5E-22 7.5E-27 236.1 25.1 82 334-416 17-98 (879)
38 smart00642 Aamy Alpha-amylase 99.9 1E-21 2.2E-26 193.9 10.2 92 322-414 2-97 (166)
39 PF14872 GHL5: Hypothetical gl 99.8 2.2E-18 4.7E-23 192.1 24.7 306 194-538 26-438 (811)
40 KOG2212 Alpha-amylase [Carbohy 99.8 1.3E-18 2.8E-23 181.5 20.2 282 335-667 38-365 (504)
41 cd02854 Glycogen_branching_enz 99.8 5.2E-19 1.1E-23 159.6 10.5 96 201-296 3-99 (99)
42 TIGR01531 glyc_debranch glycog 99.6 5.8E-14 1.3E-18 171.0 28.0 82 333-416 128-214 (1464)
43 PRK14507 putative bifunctional 99.6 1.2E-15 2.5E-20 190.9 11.0 91 317-414 744-834 (1693)
44 PF02922 CBM_48: Carbohydrate- 99.5 5.3E-14 1.1E-18 123.3 6.2 79 195-279 1-85 (85)
45 cd02860 Pullulanase_N_term Pul 99.4 4E-13 8.6E-18 121.7 9.0 92 196-299 1-97 (100)
46 COG3280 TreY Maltooligosyl tre 99.4 7.5E-13 1.6E-17 150.8 6.8 80 335-415 17-96 (889)
47 cd02855 Glycogen_branching_enz 99.3 5.2E-12 1.1E-16 115.1 10.4 93 188-287 2-100 (106)
48 cd02856 Glycogen_debranching_e 99.3 6E-12 1.3E-16 114.7 8.7 65 195-267 1-66 (103)
49 cd02853 MTHase_N_term Maltooli 99.2 6E-11 1.3E-15 104.3 10.2 84 197-298 1-85 (85)
50 cd02852 Isoamylase_N_term Isoa 99.0 5.9E-10 1.3E-14 104.2 8.9 63 197-267 1-70 (119)
51 PRK05402 glycogen branching en 98.9 1.3E-09 2.8E-14 131.2 7.0 82 188-280 13-96 (726)
52 cd02858 Esterase_N_term Estera 98.8 9E-09 2E-13 90.5 7.7 57 203-267 6-62 (85)
53 cd02861 E_set_proteins_like E 98.7 4.5E-08 9.7E-13 85.5 7.2 55 204-267 3-57 (82)
54 PF02638 DUF187: Glycosyl hydr 98.6 3E-07 6.4E-12 100.1 13.2 188 335-529 17-225 (311)
55 cd02688 E_set E or "early" set 98.5 6.1E-07 1.3E-11 77.2 8.4 60 203-269 4-63 (83)
56 PF14701 hDGE_amylase: glucano 98.4 6.2E-07 1.3E-11 99.9 7.8 81 334-416 19-106 (423)
57 PF14871 GHL6: Hypothetical gl 98.3 4.4E-06 9.5E-11 79.6 9.5 117 342-477 4-131 (132)
58 PRK14508 4-alpha-glucanotransf 98.1 0.00012 2.5E-09 84.6 19.4 243 388-672 199-464 (497)
59 COG1649 Uncharacterized protei 98.0 6E-05 1.3E-09 84.0 13.1 184 335-529 62-268 (418)
60 PF02324 Glyco_hydro_70: Glyco 98.0 1.3E-05 2.8E-10 92.1 7.4 99 315-414 563-674 (809)
61 PF02446 Glyco_hydro_77: 4-alp 97.7 0.00011 2.4E-09 85.1 10.1 51 332-383 13-64 (496)
62 cd02859 AMPKbeta_GBD_like AMP- 97.7 8E-05 1.7E-09 64.6 6.6 53 205-267 4-56 (79)
63 PLN02635 disproportionating en 97.6 0.00087 1.9E-08 77.8 15.3 139 387-539 224-377 (538)
64 cd06597 GH31_transferase_CtsY 97.4 0.0028 6.2E-08 70.1 15.6 142 335-482 22-189 (340)
65 cd06594 GH31_glucosidase_YihQ 97.4 0.0005 1.1E-08 75.3 8.9 137 335-480 21-166 (317)
66 PF02065 Melibiase: Melibiase; 97.4 0.0039 8.4E-08 70.1 15.8 168 337-531 58-232 (394)
67 cd06593 GH31_xylosidase_YicI Y 97.3 0.0044 9.5E-08 67.6 14.4 174 335-532 22-206 (308)
68 cd06592 GH31_glucosidase_KIAA1 97.2 0.0019 4.1E-08 70.3 10.7 128 335-480 28-165 (303)
69 KOG3625 Alpha amylase [Carbohy 96.9 0.0012 2.6E-08 78.0 5.4 81 334-416 139-226 (1521)
70 cd06600 GH31_MGAM-like This fa 96.9 0.0035 7.5E-08 68.7 8.7 131 335-480 22-160 (317)
71 PF13200 DUF4015: Putative gly 96.8 0.026 5.5E-07 61.6 15.0 173 341-533 16-194 (316)
72 cd06591 GH31_xylosidase_XylS X 96.7 0.0063 1.4E-07 66.8 9.1 131 335-480 22-159 (319)
73 PF00150 Cellulase: Cellulase 96.6 0.045 9.8E-07 57.9 14.5 145 339-533 22-172 (281)
74 PRK14510 putative bifunctional 96.6 0.021 4.6E-07 72.8 13.9 142 387-541 932-1084(1221)
75 cd06599 GH31_glycosidase_Aec37 96.5 0.0096 2.1E-07 65.3 9.1 131 337-480 29-168 (317)
76 PRK14582 pgaB outer membrane N 96.4 0.031 6.7E-07 66.7 13.4 134 335-481 332-469 (671)
77 cd06602 GH31_MGAM_SI_GAA This 96.4 0.016 3.5E-07 64.2 10.3 134 336-480 23-165 (339)
78 PLN02950 4-alpha-glucanotransf 96.4 0.081 1.8E-06 65.5 17.1 170 204-391 154-340 (909)
79 PF13199 Glyco_hydro_66: Glyco 96.4 0.036 7.9E-07 64.8 13.0 170 342-539 122-314 (559)
80 PF11941 DUF3459: Domain of un 96.2 0.0042 9.1E-08 54.6 3.4 45 713-757 1-59 (89)
81 PRK10426 alpha-glucosidase; Pr 96.2 0.046 1E-06 65.4 12.9 135 337-482 221-365 (635)
82 PRK11052 malQ 4-alpha-glucanot 96.1 0.094 2E-06 63.2 15.1 187 387-604 355-554 (695)
83 COG1640 MalQ 4-alpha-glucanotr 96.1 0.053 1.2E-06 62.6 12.4 88 387-483 210-309 (520)
84 cd06604 GH31_glucosidase_II_Ma 96.0 0.024 5.2E-07 62.7 8.9 129 335-480 22-159 (339)
85 PF01055 Glyco_hydro_31: Glyco 95.8 0.013 2.8E-07 67.1 6.2 133 336-482 42-182 (441)
86 cd06595 GH31_xylosidase_XylS-l 95.0 0.093 2E-06 56.9 9.1 129 335-479 23-158 (292)
87 TIGR00217 malQ 4-alpha-glucano 94.7 0.094 2E-06 61.2 8.4 139 387-539 212-366 (513)
88 PRK10658 putative alpha-glucos 94.6 0.043 9.2E-07 66.0 5.6 127 338-481 284-419 (665)
89 cd06598 GH31_transferase_CtsZ 94.5 0.064 1.4E-06 58.8 6.1 131 335-480 22-164 (317)
90 PF02324 Glyco_hydro_70: Glyco 94.5 0.087 1.9E-06 61.6 7.3 90 445-560 144-252 (809)
91 TIGR01370 cysRS possible cyste 94.4 0.18 3.9E-06 55.1 9.3 84 437-532 127-212 (315)
92 cd06542 GH18_EndoS-like Endo-b 94.1 0.19 4.2E-06 53.0 8.7 64 385-478 49-112 (255)
93 PF07745 Glyco_hydro_53: Glyco 94.0 0.48 1E-05 52.2 11.6 148 342-533 28-176 (332)
94 PRK14507 putative bifunctional 93.8 1.2 2.7E-05 58.3 16.3 187 387-604 386-585 (1693)
95 cd02875 GH18_chitobiase Chitob 93.4 0.43 9.4E-06 53.3 10.1 85 390-527 67-152 (358)
96 cd06564 GH20_DspB_LnbB-like Gl 93.2 1.5 3.2E-05 48.3 13.9 168 337-534 17-203 (326)
97 cd06562 GH20_HexA_HexB-like Be 92.7 2.7 5.8E-05 46.8 15.2 175 337-536 18-214 (348)
98 COG1501 Alpha-glucosidases, fa 92.6 0.17 3.7E-06 61.7 5.9 89 389-482 323-417 (772)
99 cd06603 GH31_GANC_GANAB_alpha 92.1 0.21 4.5E-06 55.4 5.3 129 335-479 22-161 (339)
100 cd06601 GH31_lyase_GLase GLase 91.6 0.45 9.8E-06 52.6 7.3 109 335-480 22-133 (332)
101 cd02742 GH20_hexosaminidase Be 91.6 2.3 4.9E-05 46.4 12.7 164 336-534 15-194 (303)
102 KOG3625 Alpha amylase [Carbohy 90.8 7.5 0.00016 47.5 16.3 68 443-538 497-569 (1521)
103 PF14488 DUF4434: Domain of un 90.7 0.64 1.4E-05 46.2 6.7 66 342-411 24-89 (166)
104 KOG1065 Maltase glucoamylase a 90.4 1.4 3E-05 53.2 10.2 132 334-480 308-448 (805)
105 cd06545 GH18_3CO4_chitinase Th 89.8 2.6 5.7E-05 44.5 10.9 87 386-523 45-131 (253)
106 cd06589 GH31 The enzymes of gl 89.0 1.5 3.3E-05 46.7 8.4 94 334-481 21-117 (265)
107 PLN02763 hydrolase, hydrolyzin 88.7 0.91 2E-05 56.5 7.2 129 335-480 199-336 (978)
108 smart00812 Alpha_L_fucos Alpha 88.2 7.5 0.00016 43.9 13.6 115 342-479 85-202 (384)
109 cd06565 GH20_GcnA-like Glycosy 88.2 5.9 0.00013 43.2 12.5 165 337-534 17-188 (301)
110 PF01120 Alpha_L_fucos: Alpha- 88.1 3.5 7.7E-05 45.8 10.8 150 341-532 94-244 (346)
111 PF14883 GHL13: Hypothetical g 88.0 15 0.00033 39.6 14.8 167 341-529 20-189 (294)
112 cd06568 GH20_SpHex_like A subg 87.8 13 0.00027 41.2 14.9 165 337-533 18-197 (329)
113 PF02449 Glyco_hydro_42: Beta- 86.6 2.5 5.5E-05 47.4 8.7 116 341-478 13-136 (374)
114 cd02871 GH18_chitinase_D-like 86.0 2.8 6.1E-05 45.8 8.5 61 385-478 58-118 (312)
115 COG3867 Arabinogalactan endo-1 86.0 6.6 0.00014 42.2 10.6 153 338-530 63-219 (403)
116 cd05808 CBM20_alpha_amylase Al 84.4 2.8 6.1E-05 37.1 6.3 56 205-266 3-64 (95)
117 cd06547 GH85_ENGase Endo-beta- 82.2 2.6 5.7E-05 46.7 6.3 95 391-530 50-145 (339)
118 PRK12568 glycogen branching en 81.3 3.6 7.9E-05 50.0 7.4 57 188-247 22-80 (730)
119 cd06563 GH20_chitobiase-like T 79.6 14 0.00031 41.2 11.0 78 385-469 84-164 (357)
120 COG3589 Uncharacterized conser 79.0 2.3 5E-05 46.4 4.2 53 342-410 20-72 (360)
121 cd02874 GH18_CFLE_spore_hydrol 78.2 10 0.00022 41.3 9.2 89 389-523 47-136 (313)
122 cd06570 GH20_chitobiase-like_1 78.2 15 0.00034 40.2 10.5 123 337-469 18-146 (311)
123 cd06569 GH20_Sm-chitobiase-lik 76.7 24 0.00053 40.7 12.0 83 385-468 95-192 (445)
124 cd06543 GH18_PF-ChiA-like PF-C 76.3 57 0.0012 35.5 14.1 93 345-478 19-112 (294)
125 PF03198 Glyco_hydro_72: Gluca 75.4 3.4 7.4E-05 45.0 4.3 49 342-413 57-105 (314)
126 PF13204 DUF4038: Protein of u 74.9 5.2 0.00011 43.3 5.7 66 342-411 34-110 (289)
127 PF01301 Glyco_hydro_35: Glyco 74.4 2.6 5.7E-05 46.3 3.3 58 341-409 27-85 (319)
128 PF10566 Glyco_hydro_97: Glyco 74.3 30 0.00066 37.2 11.1 64 335-408 30-94 (273)
129 cd05816 CBM20_DPE2_repeat2 Dis 74.0 12 0.00026 33.6 7.0 59 205-268 2-67 (99)
130 PLN03236 4-alpha-glucanotransf 73.3 6.3 0.00014 48.0 6.3 90 387-482 274-372 (745)
131 TIGR03849 arch_ComA phosphosul 72.9 7.6 0.00017 40.8 6.0 46 342-407 75-120 (237)
132 cd02857 CD_pullulan_degrading_ 72.7 9.2 0.0002 34.8 6.0 64 193-267 10-81 (116)
133 cd05814 CBM20_Prei4 Prei4, N-t 70.6 9.3 0.0002 35.7 5.6 56 205-266 3-67 (120)
134 PLN02950 4-alpha-glucanotransf 70.3 10 0.00022 47.5 7.4 90 387-482 461-559 (909)
135 COG2342 Predicted extracellula 70.1 73 0.0016 34.3 12.4 158 341-531 33-191 (300)
136 PRK14705 glycogen branching en 69.5 9.3 0.0002 49.1 6.9 54 189-247 516-570 (1224)
137 TIGR03356 BGL beta-galactosida 68.7 29 0.00063 39.8 10.1 102 332-470 49-150 (427)
138 COG2730 BglC Endoglucanase [Ca 68.2 8.4 0.00018 43.9 5.6 59 340-408 75-137 (407)
139 PF00686 CBM_20: Starch bindin 68.0 8 0.00017 34.4 4.4 59 205-269 4-72 (96)
140 PF05913 DUF871: Bacterial pro 67.0 9.7 0.00021 42.6 5.7 59 334-410 11-70 (357)
141 PLN03236 4-alpha-glucanotransf 66.6 11 0.00025 45.8 6.5 59 331-390 77-139 (745)
142 PF00728 Glyco_hydro_20: Glyco 63.8 8 0.00017 42.6 4.3 125 335-470 16-156 (351)
143 PLN03059 beta-galactosidase; P 62.9 12 0.00025 46.2 5.6 57 342-408 63-119 (840)
144 PRK10605 N-ethylmaleimide redu 62.1 96 0.0021 34.8 12.5 133 386-526 78-225 (362)
145 PF00724 Oxidored_FMN: NADH:fl 61.9 38 0.00082 37.5 9.2 136 386-531 79-220 (341)
146 COG1523 PulA Type II secretory 61.7 17 0.00037 44.1 6.7 82 204-285 68-154 (697)
147 COG3280 TreY Maltooligosyl tre 60.9 5.2 0.00011 47.9 2.2 23 640-663 709-731 (889)
148 cd04747 OYE_like_5_FMN Old yel 59.6 1E+02 0.0022 34.6 12.1 132 386-527 77-212 (361)
149 PF02679 ComA: (2R)-phospho-3- 58.2 16 0.00035 38.6 5.1 48 341-408 87-134 (244)
150 cd06546 GH18_CTS3_chitinase GH 57.8 45 0.00098 35.5 8.5 65 384-478 56-120 (256)
151 cd02929 TMADH_HD_FMN Trimethyl 57.6 1.8E+02 0.004 32.6 13.7 129 386-525 82-215 (370)
152 COG1306 Uncharacterized conser 56.7 77 0.0017 34.4 9.7 128 338-480 77-219 (400)
153 PTZ00445 p36-lilke protein; Pr 56.2 24 0.00053 36.5 5.8 65 335-405 26-96 (219)
154 cd02931 ER_like_FMN Enoate red 55.4 2E+02 0.0044 32.4 13.7 130 386-526 82-217 (382)
155 cd05817 CBM20_DSP Dual-specifi 55.1 31 0.00067 31.0 5.8 56 205-266 2-63 (100)
156 cd05809 CBM20_beta_amylase Bet 55.1 39 0.00084 30.4 6.4 58 205-268 5-71 (99)
157 PRK09852 cryptic 6-phospho-bet 54.5 41 0.00088 39.2 8.1 104 332-470 66-169 (474)
158 PRK11052 malQ 4-alpha-glucanot 53.7 26 0.00056 42.7 6.5 63 330-393 158-223 (695)
159 cd06548 GH18_chitinase The GH1 52.6 42 0.0009 36.8 7.5 29 450-478 105-133 (322)
160 PF03644 Glyco_hydro_85: Glyco 52.3 41 0.0009 36.9 7.3 94 391-530 46-140 (311)
161 cd00598 GH18_chitinase-like Th 52.0 60 0.0013 32.6 8.1 63 386-478 48-112 (210)
162 PF13380 CoA_binding_2: CoA bi 51.2 20 0.00043 33.3 4.0 39 341-405 69-107 (116)
163 cd04733 OYE_like_2_FMN Old yel 51.1 2E+02 0.0043 31.8 12.6 130 386-525 81-214 (338)
164 cd04734 OYE_like_3_FMN Old yel 50.5 1.9E+02 0.0041 32.1 12.3 128 386-525 76-206 (343)
165 PF14701 hDGE_amylase: glucano 48.5 35 0.00077 38.9 6.1 37 444-482 363-404 (423)
166 KOG0496 Beta-galactosidase [Ca 48.3 72 0.0016 38.2 8.7 101 341-467 52-153 (649)
167 cd02876 GH18_SI-CLP Stabilin-1 46.4 43 0.00092 36.6 6.3 29 450-478 88-116 (318)
168 smart00636 Glyco_18 Glycosyl h 46.0 56 0.0012 35.7 7.3 29 450-478 87-115 (334)
169 PLN02411 12-oxophytodienoate r 46.0 2.3E+02 0.005 32.1 12.3 132 386-525 86-230 (391)
170 cd02803 OYE_like_FMN_family Ol 45.8 1.2E+02 0.0027 33.0 9.9 126 386-524 76-205 (327)
171 cd02932 OYE_YqiM_FMN Old yello 45.7 3.9E+02 0.0084 29.4 13.8 67 341-414 33-102 (336)
172 cd05813 CBM20_genethonin_1 Gen 45.3 54 0.0012 29.0 5.8 55 205-266 3-63 (95)
173 cd05467 CBM20 The family 20 ca 45.1 84 0.0018 27.5 6.9 59 205-268 2-68 (96)
174 cd02872 GH18_chitolectin_chito 45.0 48 0.001 36.8 6.6 63 450-528 92-155 (362)
175 PRK08207 coproporphyrinogen II 44.7 38 0.00083 39.6 5.9 62 340-411 268-330 (488)
176 TIGR00217 malQ 4-alpha-glucano 44.3 36 0.00078 40.0 5.6 58 331-388 29-86 (513)
177 PRK09249 coproporphyrinogen II 43.3 72 0.0016 36.8 7.9 62 341-412 151-213 (453)
178 PF00704 Glyco_hydro_18: Glyco 42.9 59 0.0013 35.3 6.8 56 451-523 96-152 (343)
179 TIGR00539 hemN_rel putative ox 42.1 49 0.0011 36.9 6.1 63 341-413 100-163 (360)
180 PRK13210 putative L-xylulose 5 41.3 44 0.00095 35.4 5.4 51 342-405 20-70 (284)
181 PLN02316 synthase/transferase 40.9 3.5E+02 0.0076 34.8 13.6 32 331-362 601-632 (1036)
182 cd02879 GH18_plant_chitinase_c 40.7 58 0.0013 35.4 6.2 29 450-478 88-116 (299)
183 cd06549 GH18_trifunctional GH1 39.2 54 0.0012 35.6 5.7 54 449-523 83-137 (298)
184 COG1902 NemA NADH:flavin oxido 38.2 3.6E+02 0.0079 30.3 12.1 131 386-528 82-217 (363)
185 cd04735 OYE_like_4_FMN Old yel 37.9 4.3E+02 0.0093 29.4 12.7 130 386-525 77-209 (353)
186 cd02877 GH18_hevamine_XipI_cla 37.4 5.3E+02 0.011 27.8 12.8 59 345-406 18-78 (280)
187 KOG0256 1-aminocyclopropane-1- 36.9 30 0.00065 39.1 3.2 28 385-412 244-271 (471)
188 PRK08208 coproporphyrinogen II 36.9 53 0.0012 37.6 5.4 64 341-414 141-205 (430)
189 TIGR01210 conserved hypothetic 36.6 48 0.001 36.4 4.8 60 341-410 117-178 (313)
190 PRK05628 coproporphyrinogen II 36.5 39 0.00084 37.9 4.2 64 341-414 108-172 (375)
191 KOG2499 Beta-N-acetylhexosamin 36.3 1.6E+02 0.0036 34.1 8.8 30 385-414 248-278 (542)
192 PRK10076 pyruvate formate lyas 36.1 88 0.0019 32.4 6.4 59 342-405 149-211 (213)
193 PF02903 Alpha-amylase_N: Alph 35.7 57 0.0012 30.2 4.5 63 198-267 16-89 (120)
194 PRK15014 6-phospho-beta-glucos 35.5 1.1E+02 0.0024 35.6 7.8 103 333-470 65-167 (477)
195 PRK15447 putative protease; Pr 35.5 74 0.0016 34.7 6.0 53 334-406 15-67 (301)
196 PF07071 DUF1341: Protein of u 35.5 79 0.0017 32.5 5.6 43 341-403 138-180 (218)
197 PRK01060 endonuclease IV; Prov 35.5 74 0.0016 33.7 6.0 48 342-403 16-63 (281)
198 PF03423 CBM_25: Carbohydrate 35.4 39 0.00084 29.8 3.1 34 213-246 17-55 (87)
199 PRK13523 NADPH dehydrogenase N 35.2 4.6E+02 0.01 29.1 12.3 158 347-524 46-206 (337)
200 PRK09856 fructoselysine 3-epim 34.8 73 0.0016 33.6 5.8 48 342-404 17-64 (275)
201 PF01212 Beta_elim_lyase: Beta 34.1 35 0.00076 37.0 3.2 23 385-407 143-165 (290)
202 TIGR00433 bioB biotin syntheta 34.1 87 0.0019 33.6 6.3 60 341-411 123-182 (296)
203 TIGR01211 ELP3 histone acetylt 33.7 1E+02 0.0023 36.3 7.2 61 341-411 206-266 (522)
204 PRK14581 hmsF outer membrane N 33.0 4.3E+02 0.0094 32.3 12.3 127 341-478 337-466 (672)
205 PRK13384 delta-aminolevulinic 33.0 2.3E+02 0.0049 31.2 8.9 103 335-474 59-164 (322)
206 PRK05904 coproporphyrinogen II 32.7 47 0.001 37.1 4.0 62 341-412 103-165 (353)
207 PRK07094 biotin synthase; Prov 32.5 74 0.0016 34.7 5.5 62 341-412 129-190 (323)
208 PRK08446 coproporphyrinogen II 31.9 87 0.0019 34.8 6.0 63 341-413 98-161 (350)
209 PRK09593 arb 6-phospho-beta-gl 31.3 1.8E+02 0.0038 34.0 8.5 104 332-470 68-171 (478)
210 PF01791 DeoC: DeoC/LacD famil 30.5 19 0.00042 37.5 0.5 55 343-410 81-135 (236)
211 PRK08599 coproporphyrinogen II 30.3 64 0.0014 36.2 4.6 63 341-413 100-163 (377)
212 PRK05660 HemN family oxidoredu 30.2 90 0.002 35.1 5.8 64 341-414 107-171 (378)
213 PF14587 Glyco_hydr_30_2: O-Gl 29.9 2.3E+02 0.0051 32.0 8.7 119 389-533 106-227 (384)
214 cd04824 eu_ALAD_PBGS_cysteine_ 29.5 8E+02 0.017 27.1 12.8 104 335-474 49-158 (320)
215 cd02930 DCR_FMN 2,4-dienoyl-Co 29.4 7.2E+02 0.016 27.5 12.7 130 385-530 75-207 (353)
216 PRK05799 coproporphyrinogen II 29.3 71 0.0015 35.7 4.8 63 341-413 99-162 (374)
217 PRK09997 hydroxypyruvate isome 29.2 1.7E+02 0.0036 30.7 7.3 31 382-412 154-184 (258)
218 KOG0259 Tyrosine aminotransfer 29.1 61 0.0013 36.4 3.9 31 385-415 217-247 (447)
219 PRK13347 coproporphyrinogen II 28.7 71 0.0015 36.9 4.7 63 341-413 152-215 (453)
220 TIGR00542 hxl6Piso_put hexulos 28.6 90 0.0019 33.2 5.2 50 342-404 20-69 (279)
221 PRK05692 hydroxymethylglutaryl 27.2 5.8E+02 0.012 27.6 11.1 58 387-479 120-178 (287)
222 cd02933 OYE_like_FMN Old yello 26.9 8.5E+02 0.018 26.9 12.7 130 386-524 76-216 (338)
223 TIGR00538 hemN oxygen-independ 26.9 78 0.0017 36.5 4.6 63 341-413 151-214 (455)
224 PF11852 DUF3372: Domain of un 26.7 80 0.0017 31.6 4.0 50 708-757 41-121 (168)
225 PRK09589 celA 6-phospho-beta-g 26.3 2.1E+02 0.0045 33.4 8.0 100 332-470 62-165 (476)
226 COG0520 csdA Selenocysteine ly 26.2 56 0.0012 37.3 3.2 37 373-409 165-201 (405)
227 PRK08255 salicylyl-CoA 5-hydro 26.1 8.3E+02 0.018 30.3 13.6 134 386-526 474-617 (765)
228 cd05820 CBM20_novamyl Novamyl 25.9 2.6E+02 0.0057 25.2 7.0 59 205-269 5-74 (103)
229 PRK06256 biotin synthase; Vali 25.6 1E+02 0.0022 33.9 5.1 60 341-411 152-211 (336)
230 PRK04302 triosephosphate isome 25.5 1.2E+02 0.0026 31.3 5.4 45 343-407 77-121 (223)
231 TIGR01233 lacG 6-phospho-beta- 25.2 2.7E+02 0.0058 32.4 8.6 102 332-470 48-149 (467)
232 PRK09058 coproporphyrinogen II 25.0 85 0.0018 36.3 4.5 64 341-414 163-227 (449)
233 TIGR03471 HpnJ hopanoid biosyn 25.0 1.2E+02 0.0026 35.1 5.8 61 341-411 287-347 (472)
234 PF07894 DUF1669: Protein of u 24.8 63 0.0014 35.0 3.1 28 380-408 130-157 (284)
235 PF15640 Tox-MPTase4: Metallop 24.8 67 0.0014 30.4 2.8 26 381-406 16-41 (132)
236 PRK05967 cystathionine beta-ly 24.6 87 0.0019 35.6 4.3 33 378-410 157-189 (395)
237 COG1242 Predicted Fe-S oxidore 24.6 4.9E+02 0.011 28.4 9.4 99 386-533 167-265 (312)
238 cd05811 CBM20_glucoamylase Glu 24.5 2.2E+02 0.0047 25.6 6.2 59 205-269 9-77 (106)
239 PRK12928 lipoyl synthase; Prov 24.4 1.8E+02 0.004 31.5 6.6 63 335-408 217-279 (290)
240 PRK05939 hypothetical protein; 24.3 87 0.0019 35.5 4.3 31 379-409 140-170 (397)
241 PRK07379 coproporphyrinogen II 24.0 84 0.0018 35.7 4.1 64 341-414 115-179 (400)
242 PF01261 AP_endonuc_2: Xylose 23.9 45 0.00098 33.0 1.8 45 344-405 1-45 (213)
243 PRK09028 cystathionine beta-ly 23.5 93 0.002 35.3 4.3 28 383-410 159-186 (394)
244 cd00287 ribokinase_pfkB_like r 23.5 1.3E+02 0.0028 29.4 5.0 52 343-409 42-93 (196)
245 PRK09331 Sep-tRNA:Cys-tRNA syn 23.2 72 0.0016 35.7 3.4 31 380-410 168-198 (387)
246 COG0041 PurE Phosphoribosylcar 23.0 87 0.0019 30.8 3.3 52 335-408 14-65 (162)
247 cd00384 ALAD_PBGS Porphobilino 22.8 4.9E+02 0.011 28.7 9.2 103 335-474 49-154 (314)
248 cd05014 SIS_Kpsf KpsF-like pro 22.7 1.9E+02 0.0042 26.4 5.7 63 342-405 17-79 (128)
249 cd00609 AAT_like Aspartate ami 22.4 98 0.0021 33.1 4.2 53 344-412 125-177 (350)
250 cd06452 SepCysS Sep-tRNA:Cys-t 21.6 69 0.0015 35.3 2.8 30 381-410 150-179 (361)
251 PRK06582 coproporphyrinogen II 21.3 1.1E+02 0.0023 34.7 4.3 64 341-414 111-174 (390)
252 TIGR01324 cysta_beta_ly_B cyst 21.1 1.1E+02 0.0024 34.4 4.3 32 379-410 144-175 (377)
253 cd06544 GH18_narbonin Narbonin 21.1 2.6E+02 0.0056 29.7 6.9 25 454-478 97-121 (253)
254 cd08560 GDPD_EcGlpQ_like_1 Gly 21.1 2.9E+02 0.0063 31.0 7.5 68 389-480 280-348 (356)
255 TIGR02539 SepCysS Sep-tRNA:Cys 21.0 80 0.0017 35.1 3.1 33 379-411 155-187 (370)
256 PRK07324 transaminase; Validat 20.8 1.4E+02 0.0031 33.1 5.1 29 384-412 170-198 (373)
257 COG0134 TrpC Indole-3-glycerol 20.7 99 0.0022 33.0 3.5 22 386-407 142-163 (254)
258 cd04823 ALAD_PBGS_aspartate_ri 20.6 5.3E+02 0.011 28.5 9.0 103 335-474 52-159 (320)
259 PRK13209 L-xylulose 5-phosphat 20.6 1.5E+02 0.0032 31.5 5.0 51 342-405 25-75 (283)
260 cd05815 CBM20_DPE2_repeat1 Dis 20.2 3.2E+02 0.0069 24.3 6.3 57 205-267 2-67 (101)
261 PRK07050 cystathionine beta-ly 20.1 1.2E+02 0.0025 34.4 4.3 30 382-411 162-191 (394)
262 PRK13511 6-phospho-beta-galact 20.1 3.8E+02 0.0082 31.2 8.5 103 331-470 48-150 (469)
263 TIGR03539 DapC_actino succinyl 20.1 1.2E+02 0.0025 33.5 4.2 35 379-413 154-188 (357)
264 PTZ00376 aspartate aminotransf 20.1 1.3E+02 0.0028 33.9 4.6 47 353-414 177-223 (404)
No 1
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=8.4e-131 Score=1142.47 Aligned_cols=648 Identities=73% Similarity=1.264 Sum_probs=599.0
Q ss_pred cCccEeeCCCCCCCCCCccccccCCCccccchhhccccchhhhccccccccccCCcccccCcccccchhhhhccCCCCCC
Q 004253 64 ASEKVLVPGSQSDDPSAVTDQLETPETVSEDIEVRNGIESLQMEDNENVEIEDHGPVTLQGKVSSEKSEVKREVGPRSIP 143 (765)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (765)
.+..++.|++++++.++++.+...+.......++.+.....+.+ .......+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~ 54 (758)
T PLN02447 2 LSEHVLSPDGLPDSAPSPSPAVDEPRPEDPGSPATEAPYPAKTE---------------------------DNSAAASPP 54 (758)
T ss_pred CccccccCCCcCCCCCCCCCCCCcCCCCCcccccccCCcccccc---------------------------cccccccCC
Confidence 46778999999999988877777766333333322222222221 001222688
Q ss_pred CCCCCCcceecCCCCccchHHHHHHHHHHHHHHHHHHhccCchhhhhcccccCCcEEeCCcEEEEEecCCcCeEEEEeec
Q 004253 144 PPGAGQNIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDTGITYREWAPGAKSASLIGDF 223 (765)
Q Consensus 144 ~~~~~~~~~~~dp~l~~~~~~l~~R~~~~~~~~~~i~~~~g~l~~fa~gy~~lG~~~~~~gv~FrvWAP~A~~V~L~gdF 223 (765)
+|.++.+|+++||||+||+++|++|+..|.+++++|.+.+|||++||++|++||+|+.++||+||||||+|++|+|+|||
T Consensus 55 ~~~~~~~~~~~d~~l~~~~~~~~~r~~~~~~~~~~i~~~~~~l~~f~~~y~~lGa~~~~~g~~FrvWAP~A~~V~LvGdF 134 (758)
T PLN02447 55 PPGDGLGIYEIDPMLEPYEDHLRYRYSRYRRRREEIEKNEGGLEAFSRGYEKFGFNRSEGGITYREWAPGAKAAALIGDF 134 (758)
T ss_pred CCCCcceeeecCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhceeEEecCCEEEEEECCCCCEEEEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeCCCC-ccccCCccceeeccCCCC--CCCCcEEeCCCc
Q 004253 224 NNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG-IKDSIPAWIKFSVQAPGE--IPYNGIYYDPPE 300 (765)
Q Consensus 224 N~w~~~~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~dp~~ 300 (765)
|+|+...++|++.++|+|+++||+ .+|.+.++||++|||++.+.+| ..+++|||++++++.++. ..+++++|||++
T Consensus 135 N~W~~~~~~M~~~~~GvWe~~ip~-~~g~~~~~~G~~Yky~i~~~~g~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~ 213 (758)
T PLN02447 135 NNWNPNAHWMTKNEFGVWEIFLPD-ADGSPAIPHGSRVKIRMETPDGRWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPE 213 (758)
T ss_pred CCCCCCccCceeCCCCEEEEEECC-ccccccCCCCCEEEEEEEeCCCcEEeecCchHheeeccCCccCCCCceEEeCCCC
Confidence 999998999999999999999999 8899999999999999998765 468999999999988775 367999999976
Q ss_pred cccccccCCCCCCCCCceEEEeecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCC
Q 004253 301 EEKYVFQHPQPKKPKSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS 380 (765)
Q Consensus 301 ~~~~~~~~~~~~~~~~~vIYE~hv~~~s~~~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~ 380 (765)
.++|.|++++++.+.+++|||+|||+++.+++.|||+++++++|||||+|||||||||||++++++++|||++++||+|+
T Consensus 214 ~~~y~w~~~~~~~~~~~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~ 293 (758)
T PLN02447 214 EEKYVFKHPRPPRPAALRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVS 293 (758)
T ss_pred CCCCCCCCCCCCCCCCCEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccc
Confidence 66799999888778899999999999998888999999998899999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 004253 381 SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLS 460 (765)
Q Consensus 381 ~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~ 460 (765)
++|||++|||+||++||++||+||||||+||++.+..++++.|+|+...||+.+.+++++.|++.+||+++++|++||++
T Consensus 294 ~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~ 373 (758)
T PLN02447 294 SRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLS 373 (758)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHH
Confidence 99999999999999999999999999999999998777888999988889998888889999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeeccCCCCcc
Q 004253 461 NARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTF 540 (765)
Q Consensus 461 ~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~~~p~~ 540 (765)
+++||++||||||||||+|++|+|.|||+..+|+++|++|||+.+|.+++.||+++|+.+++.+|++++|||+++++|.+
T Consensus 374 ~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l 453 (758)
T PLN02447 374 NLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTL 453 (758)
T ss_pred HHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcccchhhhHHHHHHHHHHHhh-hhhhhhhhhhHhhhccccccccceecccCccccccCccchhhhccChhhH
Q 004253 541 CIPVQDGGVGFDYRLQMAIADKWIELLKK-RDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMY 619 (765)
Q Consensus 541 ~~~~~~gg~gfD~~l~~~~~d~~~~~lk~-~~~~~~~~~~~~~l~~~~~~~~~v~f~enHD~~r~g~kt~~~~~~~~~~~ 619 (765)
|+++..||+||||+|+|+|++.|+++++. .++.|.++.+.++++++++.+++|.|++|||++++|+|++++|+|+++||
T Consensus 454 ~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~sl~~r~~~E~~I~y~eSHDevv~Gkksl~~~l~d~~my 533 (758)
T PLN02447 454 CRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVHTLTNRRYTEKCVAYAESHDQALVGDKTIAFWLMDKEMY 533 (758)
T ss_pred cccCCCCcCCcceEECCccchHHHHHHhhCCCcccCHHHHHHHHhcccccCceEeccCCcCeeecCcchhHhhhcchhhh
Confidence 99999999999999999999999999995 68899999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCccchhhHHHHHHHHHHHHhcCCcceeecccccccCCCCCCCCCCCCCCCCCCcCCCCCCCCcCCccccCC
Q 004253 620 DFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDL 699 (765)
Q Consensus 620 ~~~~~~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G~~e~~d~p~~~~~dp~~~~~~gn~~s~~~~R~~~~w 699 (765)
+.|+.++..++.++|+++||||++++++++||.++|||||+||||++|+|||++ ||+||++++|++|++
T Consensus 534 ~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~-----------~n~ws~~~~~~~W~L 602 (758)
T PLN02447 534 DGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPRE-----------GNGWSYDKCRRRWDL 602 (758)
T ss_pred hcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCccc-----------ccccCcccccCCccc
Confidence 999999999999999999999999999999999888899999999999999995 999999999999999
Q ss_pred CCccccccccHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCCEEEEEEecC
Q 004253 700 GDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRGGMMTDLI 750 (765)
Q Consensus 700 ~~~~~~~~~~l~~f~r~Li~lRk~~~~L~~~~~~i~~~~~~~~vlvf~r~s 750 (765)
.+.+.++|+.|++|+|+||+|++++++|..+..++.+.+++++||||+|..
T Consensus 603 ~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~~~Viaf~R~~ 653 (758)
T PLN02447 603 ADADHLRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFERGD 653 (758)
T ss_pred cCCCchhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCCCCEEEEEeCC
Confidence 877777999999999999999999999999999999999999999888753
No 2
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-110 Score=940.01 Aligned_cols=613 Identities=56% Similarity=0.957 Sum_probs=576.8
Q ss_pred cchhhhhccCCCCCCCCCCCCcceecCCCCccchHHHHHHHHHHHHHHHHHHhccCchhhhhcccccCCcEEeCCc-EEE
Q 004253 129 EKSEVKREVGPRSIPPPGAGQNIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDTG-ITY 207 (765)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~l~~R~~~~~~~~~~i~~~~g~l~~fa~gy~~lG~~~~~~g-v~F 207 (765)
.+...+.+.+.+.+| +....+++++||||.+|..++++|++.+.+.+..|.+.+++|..|+++|++||+|.+.++ +.|
T Consensus 39 ~~~~~~~e~~~~~~p-~~~ve~~~~~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~y~~~g~h~~~d~~v~~ 117 (757)
T KOG0470|consen 39 YDLRSALEAKSGDLP-ADVVEKFYEIDPFLVPFALFLRERYKQLDDGLEFIGKSEGGLSAFSRGYEPLGTHRTPDGRVDF 117 (757)
T ss_pred hhhHHHhhhhcCCCC-hHHhhcccccccccccccccchhhHHHHHHHhhhhhhccCChhhhhccccccceeccCCCceee
Confidence 344456667777788 889999999999999999999999999999999999999999999999999999999888 999
Q ss_pred EEecCCcCeEEEEeecCCCCCCccCCc-cCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeCCCC-ccccCCccceeeccC
Q 004253 208 REWAPGAKSASLIGDFNNWNPNADIMT-QNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG-IKDSIPAWIKFSVQA 285 (765)
Q Consensus 208 rvWAP~A~~V~L~gdFN~w~~~~~~m~-~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 285 (765)
++|||.|++|+|+||||+|+.....+. +++.|+|++.+|...+|...++|++.+++.+.++++ ...++|+|++++.+.
T Consensus 118 ~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~~g~w~i~l~~~~~~s~~v~H~s~~~~~~~~p~g~~~~~~~~~~~~~~~~ 197 (757)
T KOG0470|consen 118 TEWAPLAEAVSLIGDFNNWNPSSNELKPKDDLGVWEIDLPPKVNGSGAVPHGSVSKIHLSTPYGETCKRIPAWATYVDQE 197 (757)
T ss_pred eeecccccccccccccCCCCCcccccCcccccceeEEecCcccCCCccccccceeEEEeecCCcceeeccChHhhcccCC
Confidence 999999999999999999999888877 888999999999998999999999999999999988 679999999999998
Q ss_pred CCCCCCCcEEeCCCccccccccCCCCCCCC-CceEEEeecCCCC-CCCCCCC---HHhhHhhhhhHHHHcCCCEEEECCc
Q 004253 286 PGEIPYNGIYYDPPEEEKYVFQHPQPKKPK-SLRIYEAHVGMSS-TEPIINT---YANFRDDVLPRIKRLGYNAVQIMAV 360 (765)
Q Consensus 286 ~~~~~~~~~~~dp~~~~~~~~~~~~~~~~~-~~vIYE~hv~~~s-~~~~~Gt---~~~~~~~~L~yLk~LGvt~I~L~Pi 360 (765)
+...++.++.|+|++...|.|++++|+.|+ +++|||+|||.|| .++++-+ |++|+++.|||||+||+||||||||
T Consensus 198 ~~~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi 277 (757)
T KOG0470|consen 198 GEGPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPI 277 (757)
T ss_pred CcccceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccccCCCCccccccchhhhhhhhhhHHHHhCccceEEeeh
Confidence 888889999999987778888889998887 9999999997665 4555545 9999975699999999999999999
Q ss_pred ccC-CCCCCCCCccccccCCCCCCCCHH------HHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCC-CCCcc
Q 004253 361 QEH-SYYASFGYHVTNFFAPSSRCGTPD------DLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTD-GHYFH 432 (765)
Q Consensus 361 ~e~-~~~~~~GY~~~~~~a~~~~~Gt~~------efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~-~~yf~ 432 (765)
+|| .++++|||+|++||+|.+||||++ |||.||++||.+||.||||||+||++++..++++.|+|++ .+||+
T Consensus 278 ~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~d~l~~fdGid~~~Yf~ 357 (757)
T KOG0470|consen 278 FEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSKDGLNMFDGIDNSVYFH 357 (757)
T ss_pred hhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcCCcchhccCcCCceEEE
Confidence 999 688899999999999999999999 9999999999999999999999999998889999999999 78999
Q ss_pred cCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCcc---CChhH
Q 004253 433 SGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFA---TDVDA 509 (765)
Q Consensus 433 ~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~---~d~~a 509 (765)
.+++++|+.|+++.|||++|+|+++|+++|+||++||+|||||||++++|+|.|||...+|+++|.+|+|.. .+.++
T Consensus 358 ~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~~~f~gd~~~y~g~~g~~~d~~~ 437 (757)
T KOG0470|consen 358 SGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNAAGFDGDYIEYFGTDGSFVDVDA 437 (757)
T ss_pred eCCcccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhhhccccccccCCcchhhhccCCCcccccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988 99999
Q ss_pred HHHHHHHHHHHhhcCCCceEEeeccCCCCcc-ccccccCCcccc--hhhhHHHHHHHHHHHhh-hhhhhhhhhhHhhhcc
Q 004253 510 VVYLMLVNDMIHGLYPEAVSIGEDVSGMPTF-CIPVQDGGVGFD--YRLQMAIADKWIELLKK-RDEDWKMGAIVHTMTN 585 (765)
Q Consensus 510 ~~~l~~~~~~v~~~~p~~i~iaE~~~~~p~~-~~~~~~gg~gfD--~~l~~~~~d~~~~~lk~-~~~~~~~~~~~~~l~~ 585 (765)
+.+++.+++.++...|+.|++||+.+++|.+ |.|..+|+.||| |++++...++|++.|+. .+..|.++.+...+++
T Consensus 438 l~~lmlAnd~~l~~~~~~It~~~D~~gm~~~~~~P~~~g~~~~d~~yr~~~~~~~k~~~~Lk~~~~~~~~~gs~~~~ltN 517 (757)
T KOG0470|consen 438 LVYLMLANDPLLGGTPGLITDAEDVSGMPGLGCFPVWQGGAGFDGLYRLAVRLFDKWIQLLKGSSDAEWIMGSIDYTLTN 517 (757)
T ss_pred HHHHHhhcchhhhcCCcceEeeeccccCCCcCCccccccccccchhhhHHhhhHHHHHHHhccCchhheeccCcceeeec
Confidence 9999999999999999999999999999999 999999999999 99999999999999998 8999999999999999
Q ss_pred ccccccceecccCccccccCc-cchhh-hccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhcCCcceeeccccccc
Q 004253 586 RRWLEKCVAYAESHDQALVGD-KTIAF-WLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFG 663 (765)
Q Consensus 586 ~~~~~~~v~f~enHD~~r~g~-kt~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G 663 (765)
+++++++++|+++||++.+|+ +|+++ |+|++.||..|+..++.++.++|++++|+|+++|++++.|..+|||||||||
T Consensus 518 ~R~~e~~v~y~~~HDq~~v~d~~T~af~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~pl~fmGdEfG 597 (757)
T KOG0470|consen 518 RRYPEKSVNYAESHDQALVGDLVTIAFKWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGAPLNFMGDEFG 597 (757)
T ss_pred cccccceeeeeeccCCccccceeeecchhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCccceeccccccC
Confidence 999999999999999999999 99999 9999999999999999999999999999999999988876556669999999
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCCCCCcCCcc-ccCCCCcccccc-ccHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCC
Q 004253 664 HPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRR-RFDLGDADYLRY-RGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGD 741 (765)
Q Consensus 664 ~~e~~d~p~~~~~dp~~~~~~gn~~s~~~~R~-~~~w~~~~~~~~-~~l~~f~r~Li~lRk~~~~L~~~~~~i~~~~~~~ 741 (765)
|++|.++|+ .+|++|++++|+ +++..+.+..+| +.+.+|.+.|+.|.+.+.+++++.+++.++++.+
T Consensus 598 h~e~~d~~~-----------~~nn~s~~~~r~~~f~~~~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~k~e~~ 666 (757)
T KOG0470|consen 598 HPEWLDFPR-----------YGNNFSYNYARRKRFDLADSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISLKHEAD 666 (757)
T ss_pred CccccCCCc-----------ccCCccccccCccccccccchhhhhhhhhhhhhhHHHHHHHhccccccccccccccchhh
Confidence 999999998 499999999999 999999999999 8999999999999999999999999999999999
Q ss_pred EEEEEEecCCcc
Q 004253 742 RGGMMTDLIPSW 753 (765)
Q Consensus 742 ~vlvf~r~sp~~ 753 (765)
++++|+|-.-..
T Consensus 667 ~~i~fer~~~~~ 678 (757)
T KOG0470|consen 667 EVIVFERGPLLF 678 (757)
T ss_pred heeeeccCCeEE
Confidence 999998654433
No 3
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=1.4e-104 Score=903.65 Aligned_cols=544 Identities=40% Similarity=0.782 Sum_probs=508.2
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhccCchhhhhcccccCCcEEeCC-cEEEEEecCCcCeEEEEeecCCCCCCccC----
Q 004253 158 LLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDT-GITYREWAPGAKSASLIGDFNNWNPNADI---- 232 (765)
Q Consensus 158 l~~~~~~l~~R~~~~~~~~~~i~~~~g~l~~fa~gy~~lG~~~~~~-gv~FrvWAP~A~~V~L~gdFN~w~~~~~~---- 232 (765)
-+.|++.|+.||+..++++.+|.+++++|+.||+||+.||.|++.+ ++.|++|||+|...+|+||||+|+++.+.
T Consensus 85 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~g~~r~~~~~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~ 164 (872)
T PLN03244 85 DKIFAQFLRERHKALKDLKDEIFKRHFDFQDFASGFEILGMHRHMEHRVDFMDWAPGARYCAIIGDFNGWSPTENAAREG 164 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhhhhhhhccccCcccCceeEeecCCcceeeeeccccCCCccccccccc
Confidence 5689999999999999999999999999999999999999999985 89999999999999999999999998775
Q ss_pred -CccCCCceEEEEeCCCC--------------------------------------------------------------
Q 004253 233 -MTQNEFGVWEIFLPNNA-------------------------------------------------------------- 249 (765)
Q Consensus 233 -m~~~~~GvW~i~lp~~~-------------------------------------------------------------- 249 (765)
|.+++.|+|+|.|+...
T Consensus 165 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (872)
T PLN03244 165 HFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDDNDKGDSGVSAEEIFKKANDEYWEPGEDRFIKNRFEVAAKLYEQ 244 (872)
T ss_pred cccccccceEEEEechhhhcCCCchhhhHhhhccccccccCcCCCCHHHHHHHhhhhhcCCchhhHHHhHHHHHHHHHHH
Confidence 77999999999995431
Q ss_pred ---------------------------------------------C--C-------------------------------
Q 004253 250 ---------------------------------------------D--G------------------------------- 251 (765)
Q Consensus 250 ---------------------------------------------~--G------------------------------- 251 (765)
+ |
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (872)
T PLN03244 245 IFGPNGPETEEELEDIPDAETRYKAWKEEHKDDPPSNLPPCDIIDKGQGKEYDIFNVVDDPEWREKFRAKEPPIAYWLES 324 (872)
T ss_pred hhCCCCccchhhhccCcchHHHHHhhhhhcccCChhcCCCeEeeecCCCcccceeeeccCHHHHHHhhccCCChhhHHHh
Confidence 0 0
Q ss_pred -----------CCCCCCCCEEEEEeeCCCCccccCCccceeeccCCCCCCCCcEEeCCCccccccccCCCCCCCCCceEE
Q 004253 252 -----------SPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKKPKSLRIY 320 (765)
Q Consensus 252 -----------~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~~~~~~~~~vIY 320 (765)
.+.|+||++||+++.+++|..+|+|+|++++++.+....|++++|+|+..++|.|++++|++|..++||
T Consensus 325 ~~~~~~w~~~~~~~i~H~s~~k~~~~~~~g~~~RiPaw~~~~~~~~~~~~~~~~~w~P~~~~~y~~k~~~p~~p~~lrIY 404 (872)
T PLN03244 325 RKGRKAWLKKYIPAIPHGSKYRLYFNTPDGPLERIPAWATYVLPDDDGKQAFAIHWEPPPEAAHKWKNMKPKVPESLRIY 404 (872)
T ss_pred hcccCceeecccCCCCCCCeEEEEEEcCCCCcccCCCCeeeEEecCCCCceeeeEeCCCcccCCccCCCCCCCCCCceEE
Confidence 225899999999999887778999999999999988888999999999878899999999999999999
Q ss_pred EeecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcC
Q 004253 321 EAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG 400 (765)
Q Consensus 321 E~hv~~~s~~~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~G 400 (765)
|+|||+++.++++|||++|++ . +++||+|+++|||++|||+||++||++|
T Consensus 405 E~HvGms~~e~kv~ty~eF~~-~-----------------------------vt~fFApssRYGTPeDLK~LVD~aH~~G 454 (872)
T PLN03244 405 ECHVGISGSEPKISSFEEFTE-K-----------------------------VTNFFAASSRYGTPDDFKRLVDEAHGLG 454 (872)
T ss_pred EEEeeecCCCCCcccHHHHhh-c-----------------------------cCcccccCcccCCHHHHHHHHHHHHHCC
Confidence 999999999999999999995 2 6799999999999999999999999999
Q ss_pred CEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccc
Q 004253 401 LLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (765)
Q Consensus 401 I~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~ 480 (765)
|+||||||+||++.+...+++.|+|++..||+.+.++.+..|+++.||+++++|++||+++++||++||||||||||+|+
T Consensus 455 I~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVt 534 (872)
T PLN03244 455 LLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLA 534 (872)
T ss_pred CEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecch
Confidence 99999999999999887889999998888999888889999999999999999999999999999999999999999999
Q ss_pred cccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeeccCCCCccccccccCCcccchhhhHHHH
Q 004253 481 SMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIA 560 (765)
Q Consensus 481 ~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~~~p~~~~~~~~gg~gfD~~l~~~~~ 560 (765)
+|+|.|||+ .+|+++|.++++...|.+++.||+++|+.+++.+|++++|||+++++|.+|++...||+||||+|+|+|+
T Consensus 535 SMLY~d~G~-~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnMgwm 613 (872)
T PLN03244 535 SMIYTHNGF-ASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNLSAP 613 (872)
T ss_pred hheeecccc-ccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceecCcch
Confidence 999999999 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-hhhhhhhhhhHhhh-ccccccccceecccCccccccCccchhhhccChhhHhhhhcCCCCCccchhhHHH
Q 004253 561 DKWIELLKK-RDEDWKMGAIVHTM-TNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIAL 638 (765)
Q Consensus 561 d~~~~~lk~-~~~~~~~~~~~~~l-~~~~~~~~~v~f~enHD~~r~g~kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 638 (765)
+.|+++++. .+..|.++.+.+++ +++++.+++++|.||||++.+|+|++++|+++++||..| ..++++.+++++
T Consensus 614 dd~lkylk~~pderw~~~~ItfsL~~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~----~~~~vv~Rg~aL 689 (872)
T PLN03244 614 DMWLDFLDNIPDHEWSMSKIVSTLIANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPL----GGKELLDRGCSL 689 (872)
T ss_pred HHHHHHHHhCCCcccCHHHHhhhhhcccCCcceEEEEecccceeccccchHHhhhccccccccc----ccchhhhhhhHH
Confidence 999999985 46669999999988 677888899999999999999999999999999999887 456788899999
Q ss_pred HHHHHHHHHhcCCcceeecccccccCCCCCCCCCCCCCCCCCCcCCCCCCCCcCCccccCCCCccccccccHHHHHHHHH
Q 004253 639 HKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQ 718 (765)
Q Consensus 639 ~k~a~lllltlpG~P~l~yyGdE~G~~e~~d~p~~~~~dp~~~~~~gn~~s~~~~R~~~~w~~~~~~~~~~l~~f~r~Li 718 (765)
+||++++++++||.++|||||+|||+++|.+||++ ||++|++.||++|++.+.+ .|+.|++|+|+||
T Consensus 690 hKMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr~-----------gN~~s~~~arrdW~Lld~~--~hk~L~~FdrdLn 756 (872)
T PLN03244 690 HKMIRLITFTIGGHAYLNFMGNEFGHPERIEFPMP-----------SNNFSFSLANRCWDLLENE--VHHHLFSFDKDLM 756 (872)
T ss_pred HHHHHHHHHHccCccceeecccccCCchheecccc-----------CCCccccccccCccccCCh--hHHHHHHHHHHHH
Confidence 99999999999999999999999999999999994 9999999999999986544 5999999999999
Q ss_pred HHHHHcCCCCCCCeEEEEEcCCCEEEEEEec
Q 004253 719 HLEEKYGFMTSEHQYVSRKDQGDRGGMMTDL 749 (765)
Q Consensus 719 ~lRk~~~~L~~~~~~i~~~~~~~~vlvf~r~ 749 (765)
+|++++++|..+..++.+.+++++||||+|.
T Consensus 757 ~Ly~~~~aL~~gf~wI~~~d~e~kVIAF~R~ 787 (872)
T PLN03244 757 DLDENEGILSRGLPNIHHVKDAAMVISFMRG 787 (872)
T ss_pred HHHhcCcccccCCcEEeeecCCCCEEEEEec
Confidence 9999999999999999999999999988885
No 4
>PLN02960 alpha-amylase
Probab=100.00 E-value=1.6e-100 Score=887.13 Aligned_cols=572 Identities=43% Similarity=0.814 Sum_probs=500.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhccCchhhhhcccccCCcEEeCC-cEEEEEecCCcCeEEEEeecCCCCCCccCCc--
Q 004253 158 LLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDT-GITYREWAPGAKSASLIGDFNNWNPNADIMT-- 234 (765)
Q Consensus 158 l~~~~~~l~~R~~~~~~~~~~i~~~~g~l~~fa~gy~~lG~~~~~~-gv~FrvWAP~A~~V~L~gdFN~w~~~~~~m~-- 234 (765)
-+.|+++|++||+.+++++.+|.+++++|+.||++|+.||+|++.+ |+.|++|||+|+.++|+||||+|+++.+.|.
T Consensus 82 ~~~f~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g 161 (897)
T PLN02960 82 DRAFAQFLRERHKALKDLKWEIFKRHIDLKEFASGFELLGMHRHPEHRVDFMEWAPGARYCSLVGDFNNWSPTENRAREG 161 (897)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhhHHHHhccccCcccCeEEEEEcCCceeEEEeecccCCCcccchhhcc
Confidence 4699999999999999999999999999999999999999999875 8999999999999999999999999998765
Q ss_pred ---cCCCceEEEEeCCCC--------------------------------------------------------------
Q 004253 235 ---QNEFGVWEIFLPNNA-------------------------------------------------------------- 249 (765)
Q Consensus 235 ---~~~~GvW~i~lp~~~-------------------------------------------------------------- 249 (765)
+++.|+|+|.|+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (897)
T PLN02960 162 YFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDDYDKGDSGIDIEELFQKMNDEYWEPGEDRFIKNRLEVPAKLYEQ 241 (897)
T ss_pred cccccccceEEEEechhhhcCCCcchhhhhhhccccccccCCCCCCHHHHHHHhhhhhcCCcchhhhhccchhHHHHHHH
Confidence 889999999995431
Q ss_pred ---------------------------------------------CC---------------------------------
Q 004253 250 ---------------------------------------------DG--------------------------------- 251 (765)
Q Consensus 250 ---------------------------------------------~G--------------------------------- 251 (765)
.|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 321 (897)
T PLN02960 242 MFGPNGPQTLEELGDIPDAETRYKEWKKEHKDDDPSNLPPLDIIDTGQPYDIFNVVTDPVWREKFLEKKPPLPYWEETRK 321 (897)
T ss_pred hhCCCCCcchhhhhccCccchhhhhhhhhccCCChhhCCCeeecCCCcccccceeccCHHHHHHHhccCCCCcceeeeee
Confidence 00
Q ss_pred ---------CCCCCCCCEEEEEeeCCCCccccCCccceeeccCCCCCCCCcEEeCCCccccccccCCCCCCCCCceEEEe
Q 004253 252 ---------SPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKKPKSLRIYEA 322 (765)
Q Consensus 252 ---------~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~~~~~~~~~vIYE~ 322 (765)
.+.+.||++|+|++++.++..+++|||++++...+.......++|+|+....|.|++.+|..+.+++|||+
T Consensus 322 ~~~gw~~~~ip~~~hG~~Yky~v~~~~g~~~~vdpyA~~~qp~~~~~~~~~v~~d~~~~~~y~W~~~~p~~~~~~vIYEl 401 (897)
T PLN02960 322 GRKAWLKKYIPAIPHGSKYRVYFNTPDGPLERVPAWATYVLPDPDGKQWYAIHWEPPPEEAYKWKFERPKVPKSLRIYEC 401 (897)
T ss_pred cCCcEEEEEccCCCCCCEEEEEEEeCCCceEECCCcceeEeecCCCccceEEEeCCCCCCCCCCCCCCCCCCCCcEEEEE
Confidence 11358999999999987777778999999876554443356778898655679999887777789999999
Q ss_pred ecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCE
Q 004253 323 HVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL 402 (765)
Q Consensus 323 hv~~~s~~~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~ 402 (765)
|||+|+.++++|||++++++.|||||+|||||||||||++++.+.+|||++++||+|+++|||++|||+||++||++||+
T Consensus 402 Hvg~~~~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~ 481 (897)
T PLN02960 402 HVGISGSEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLL 481 (897)
T ss_pred ecccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCE
Confidence 99999988889999999977799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccc
Q 004253 403 VLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 482 (765)
Q Consensus 403 VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m 482 (765)
||||+|+||++.++..++..|+|+...||+.+..+++..|+++.|||++++||+||+++++||++||||||||||+|++|
T Consensus 482 VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sM 561 (897)
T PLN02960 482 VFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSM 561 (897)
T ss_pred EEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeeccccee
Confidence 99999999999987677889999877888887778888999999999999999999999999999999999999999999
Q ss_pred cccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeeccCCCCccccccccCCcccchhhhHHHHHH
Q 004253 483 MYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADK 562 (765)
Q Consensus 483 ~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~~~p~~~~~~~~gg~gfD~~l~~~~~d~ 562 (765)
+|.|+|. ..|+|++.++++...|.+++.||+++|+.+++..|++++|||+.+++|.+|.+...||+||||+++|++++.
T Consensus 562 lY~d~g~-~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~vt~P~~~GGLGFDYkwnmG~~~d 640 (897)
T PLN02960 562 LYTHNGF-ASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDYYVNLSPSEM 640 (897)
T ss_pred eeeccCc-cccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCCccccCCCCCCCcccccCCCcHHH
Confidence 9999887 467787778887789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-hhhhhhhhhhHhhhc-cccccccceecccCccccccCccchhhhccChhhHhhhhcCCCCCccchhhHHHHH
Q 004253 563 WIELLKK-RDEDWKMGAIVHTMT-NRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHK 640 (765)
Q Consensus 563 ~~~~lk~-~~~~~~~~~~~~~l~-~~~~~~~~v~f~enHD~~r~g~kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k 640 (765)
|+++++. ..+.|.+..+...+. ++...+++|+|+||||++.+|++++...+.+.+++.+++.. +.+.+++++++
T Consensus 641 ~l~~l~~~~~r~~~~~~l~~s~~~~~~~~~~~v~Y~EnHDQVv~Gkrsl~~rL~g~~~~k~~~~~----~~~lRa~al~~ 716 (897)
T PLN02960 641 WLSLLENVPDQEWSMSKIVSTLVKNKENADKMLSYAENHNQSISGGKSFAEILLGKNKESSPAVK----ELLLRGVSLHK 716 (897)
T ss_pred HHHHHHhCcCCCCChhccEeeeccCcCCcceEEEEecCcCccccCcccHHHHCCCchhhhhcccC----hhhhhhhhHHH
Confidence 9999985 456777777777777 66677899999999999999999999998888877776652 34567888999
Q ss_pred HHHHHHHhcC-CcceeecccccccCCCCCCCCCCCCCCCCCCcCCCCCCCCcCCccccCCCCccccccccHHHHHHHHHH
Q 004253 641 MIRLVTMGLG-GEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQH 719 (765)
Q Consensus 641 ~a~lllltlp-G~P~l~yyGdE~G~~e~~d~p~~~~~dp~~~~~~gn~~s~~~~R~~~~w~~~~~~~~~~l~~f~r~Li~ 719 (765)
++++++++++ |.|++ |||+|||+++|.++|+ ++|+.++..++.+|++ ++...|+.|++|+|+||+
T Consensus 717 ~~rllt~~~~Pg~pLl-FMG~EFGh~e~~~~Pd-----------P~n~~tf~~s~LdW~L--l~~~~h~~l~~f~rdL~~ 782 (897)
T PLN02960 717 MIRLITFTLGGSAYLN-FMGNEFGHPERVEFPR-----------ASNNFSFSLANRRWDL--LEDGVHAHLFSFDKALMA 782 (897)
T ss_pred HHHHHHHHhCCCCCEe-eCccccCChhhhhCcC-----------CCCccccccccCCccc--ccChhHHHHHHHHHHHHH
Confidence 9987765554 67766 9999999998878887 4788888777665555 445579999999999999
Q ss_pred HHHHcCCCCCCCeEEEEEcCCCEEEEEEe
Q 004253 720 LEEKYGFMTSEHQYVSRKDQGDRGGMMTD 748 (765)
Q Consensus 720 lRk~~~~L~~~~~~i~~~~~~~~vlvf~r 748 (765)
||+++|+|..+...+.+.+.+++||+|+|
T Consensus 783 Lr~~~paL~~g~~~i~~~d~~~~Viaf~R 811 (897)
T PLN02960 783 LDEKYLILSRGLPNIHHVNDTSMVISFTR 811 (897)
T ss_pred HHhcChhhcCCcceeeeecCCCCEEEEEe
Confidence 99999999877766655565555555554
No 5
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=5.5e-85 Score=758.22 Aligned_cols=509 Identities=25% Similarity=0.479 Sum_probs=417.5
Q ss_pred hhhcccccCCcEEe----CCcEEEEEecCCcCeEEEEeecCCCCCCccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEE
Q 004253 188 AFSRGYEKFGFIRS----DTGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKI 263 (765)
Q Consensus 188 ~fa~gy~~lG~~~~----~~gv~FrvWAP~A~~V~L~gdFN~w~~~~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~ 263 (765)
.+.+.|+.||||.. .+||+|+||||+|++|+|+||||+|+...++|.+.++|||+++||+... |..|||
T Consensus 119 ~~~~~y~~lGah~~~~~g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~-------G~~YKY 191 (730)
T PRK12568 119 DGQALRRALGAQHVQVGEVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEA-------GARYKY 191 (730)
T ss_pred chhhhHHhcCCeEeeECCCCcEEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCCCC-------CCEEEE
Confidence 66788999999985 4689999999999999999999999998999998899999999998654 679999
Q ss_pred EeeCCCCc-cccCCccceeeccCCCCCCCCcEEeCCCccccccccCC-----C-C-CCCCCceEEEeecCCCCCCC--CC
Q 004253 264 HMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHP-----Q-P-KKPKSLRIYEAHVGMSSTEP--II 333 (765)
Q Consensus 264 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~-----~-~-~~~~~~vIYE~hv~~~s~~~--~~ 333 (765)
++.+.+|. ....|||++.+...+.. .+++.++. .|.|++. + + ...++++|||+|||+|+..+ ..
T Consensus 192 eI~~~~G~~~~k~DPYA~~~e~~p~~---asvV~~~~---~~~W~d~~W~~~r~~~~~~~~~~IYEvHvgsf~~~~~~~~ 265 (730)
T PRK12568 192 AITAADGRVLLKADPVARQTELPPAT---ASVVPSAA---AFAWTDAAWMARRDPAAVPAPLSIYEVHAASWRRDGHNQP 265 (730)
T ss_pred EEEcCCCeEeecCCCcceEeecCCCC---CeEEcCCC---CCCCCChhhhhcccccCCCCCcEEEEEEhHHhcCCCCCCC
Confidence 99886664 46789999987765543 57777653 3666543 2 1 23478999999999998643 45
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecccccc
Q 004253 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (765)
Q Consensus 334 Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~ 413 (765)
++|++++++.|||||+||||+||||||++++..++|||++++||+|+++|||++|||+||++||++||+||||+|+||++
T Consensus 266 ~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~ 345 (730)
T PRK12568 266 LDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFP 345 (730)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 79999997778999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CCCcccCcCCCCCCCCCcccCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCcccc
Q 004253 414 NNVLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVA 492 (765)
Q Consensus 414 ~~~~~~~~~f~g~~~~yf~~~~-~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~ 492 (765)
.+. .++..|+++. .|.+.++ .+.+..|++..||+++|+|++||+++++||++||||||||||++++|+|.+++..++
T Consensus 346 ~d~-~~l~~fdg~~-~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g 423 (730)
T PRK12568 346 DDA-HGLAQFDGAA-LYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEG 423 (730)
T ss_pred ccc-cccccCCCcc-ccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccc
Confidence 864 4677888864 3444443 467788988889999999999999999999999999999999999999988776543
Q ss_pred ccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeeccCCCCccccccccCCcccchhhhHHHHHHHHHHHhh--h
Q 004253 493 FTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKK--R 570 (765)
Q Consensus 493 f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~~~p~~~~~~~~gg~gfD~~l~~~~~d~~~~~lk~--~ 570 (765)
-+ ..+.+|+..+.++++||+++|+.+++.+|++++|||+++.+|.++.+...||+|||++|+|.|++.++++++. .
T Consensus 424 ~w--~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~ 501 (730)
T PRK12568 424 EW--VPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHKWNMGWMHDTLHYMQRDPA 501 (730)
T ss_pred cc--cccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCccccccccCCCCCcCcEeCChhHHHHHHHHhhCch
Confidence 21 1234578889999999999999999999999999999999999999999999999999999999999999985 2
Q ss_pred hhhhhhhhhHhhhccccccccceecccCccccccCccchhhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhcC
Q 004253 571 DEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLG 650 (765)
Q Consensus 571 ~~~~~~~~~~~~l~~~~~~~~~v~f~enHD~~r~g~kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltlp 650 (765)
.+.+....+...+.. .+.++.| +..|||++..|++++..- |+.+.+ +..+..|++.++++++|
T Consensus 502 ~r~~~h~~ltf~~~y-~~~e~fv-lp~SHDEvvhgk~sl~~k-mpGd~~--------------~k~a~lR~~~~~~~~~P 564 (730)
T PRK12568 502 ERAHHHSQLTFGLVY-AFSERFV-LPLSHDEVVHGTGGLLGQ-MPGDDW--------------RRFANLRAYLALMWAHP 564 (730)
T ss_pred hhhhhhhhhhhhhhh-hhhccEe-ccCCCcccccCchhhhhc-CCCCHH--------------HHHHHHHHHHHHHHhCC
Confidence 345555555555543 4555554 789999999888876432 444433 33555678888999999
Q ss_pred CcceeecccccccCC-CCCCCCCCCCCCCCCCcCCCCCCCCcCCccccCCCCccccccccHHHHHHHHHHHHHHcCCCCC
Q 004253 651 GEAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTS 729 (765)
Q Consensus 651 G~P~l~yyGdE~G~~-e~~d~p~~~~~dp~~~~~~gn~~s~~~~R~~~~w~~~~~~~~~~l~~f~r~Li~lRk~~~~L~~ 729 (765)
|.|+| |||+|||+. +|. ...+++|..++++.++.+++|+|+||+||+++|+|..
T Consensus 565 GkkLl-FmG~Efgq~~ew~------------------------~~~~ldW~ll~~~~h~~~~~~~~dLn~ly~~~paL~~ 619 (730)
T PRK12568 565 GDKLL-FMGAEFGQWADWN------------------------HDQSLDWHLLDGARHRGMQQLVGDLNAALRRTPALYR 619 (730)
T ss_pred Cccee-eCchhhCCccccc------------------------CCCCccccccCChhHHHHHHHHHHHHHHHHhChhhhc
Confidence 99988 999999994 662 2257899888888899999999999999999999832
Q ss_pred CC-------------------eEEEEEcC--CCEEEEEEecCCcccc
Q 004253 730 EH-------------------QYVSRKDQ--GDRGGMMTDLIPSWYM 755 (765)
Q Consensus 730 ~~-------------------~~i~~~~~--~~~vlvf~r~sp~~~~ 755 (765)
.. +++|+..+ ++.|||++||+|+.+-
T Consensus 620 ~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~~~~~ 666 (730)
T PRK12568 620 GTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTPQPHH 666 (730)
T ss_pred ccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCCCCcc
Confidence 21 22333222 3558888888888653
No 6
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.3e-84 Score=753.58 Aligned_cols=478 Identities=28% Similarity=0.540 Sum_probs=394.1
Q ss_pred hhhcccccCCcEEeCC----cEEEEEecCCcCeEEEEeecCCCCCCccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEE
Q 004253 188 AFSRGYEKFGFIRSDT----GITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKI 263 (765)
Q Consensus 188 ~fa~gy~~lG~~~~~~----gv~FrvWAP~A~~V~L~gdFN~w~~~~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~ 263 (765)
.+.+.|+.||+|.... ||+||||||+|++|+|+||||+|+...++|.+.+.|+|+++||+.. +|..|+|
T Consensus 19 ~~~~~~~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~-------~g~~Yky 91 (639)
T PRK14706 19 DLVRPDHLLGAHPATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGAR-------PGQRYKF 91 (639)
T ss_pred cccchhHhcCccCccCCCcccEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCCC-------CCCEEEE
Confidence 3467789999998653 7999999999999999999999998889999988999999999764 4779999
Q ss_pred EeeCCCC-ccccCCccceeeccCCCCCCCCcEEeCCCccccccccCCCC------CCCCCceEEEeecCCCCCC--CCCC
Q 004253 264 HMDTPSG-IKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQP------KKPKSLRIYEAHVGMSSTE--PIIN 334 (765)
Q Consensus 264 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~~~------~~~~~~vIYE~hv~~~s~~--~~~G 334 (765)
+++++.| ...+.|||+++....+.. .++++++ .|.|++..+ ...++++|||+|||+|+.. +..|
T Consensus 92 ~I~~~~g~~~~~~DPYa~~~~~~~~~---~svv~~~----~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~g~~~ 164 (639)
T PRK14706 92 RVTGAAGQTVDKMDPYGSFFEVRPNT---ASIIWED----RFEWTDTRWMSSRTAGFDQPISIYEVHVGSWARRDDGWFL 164 (639)
T ss_pred EEECCCCCEEeccCcceEEEecCCCC---ceEECCC----CCCCCCcccccccCCccCCCcEEEEEehhhcccCCCCCcc
Confidence 9998654 356899999988766543 6787775 377775432 2235699999999999753 3458
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccC
Q 004253 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~ 414 (765)
+|++++++.++|||+|||||||||||++++..++|||++++||+|+++|||++|||+||++||++||+||||+|+||++.
T Consensus 165 ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~ 244 (639)
T PRK14706 165 NYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPT 244 (639)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCc
Confidence 99999965569999999999999999999998999999999999999999999999999999999999999999999988
Q ss_pred CCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCcccccc
Q 004253 415 NVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFT 494 (765)
Q Consensus 415 ~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~ 494 (765)
+. .++..|+|+..++|.....+++..|++..||+++++||+||+++++||++||||||||||++++|+|.+++... |
T Consensus 245 ~~-~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~-~- 321 (639)
T PRK14706 245 DE-SGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTE-W- 321 (639)
T ss_pred ch-hhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCccc-c-
Confidence 64 56778888765445555567888999989999999999999999999999999999999999999998877642 3
Q ss_pred CCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeeccCCCCccccccccCCcccchhhhHHHHHHHHHHHhhhhhhh
Q 004253 495 GNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDW 574 (765)
Q Consensus 495 ~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~~~p~~~~~~~~gg~gfD~~l~~~~~d~~~~~lk~~~~~~ 574 (765)
..+++|+..+.+++.||+++|+.+++.+|++++|||+++.+|.++.+... |+|||++++|.|++.++++++.. ..|
T Consensus 322 --~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~~-G~gFD~~w~~~w~~~~l~~~~~~-~~~ 397 (639)
T PRK14706 322 --VPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY-GLGFDYKWAMGWMNDTLAYFEQD-PLW 397 (639)
T ss_pred --cccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccCC-CCccccEeccHHHHHHHHHhccC-chh
Confidence 56778999999999999999999999999999999999999999999875 89999999999998888877632 222
Q ss_pred hhhhhHhhhc---cccccccceecccCccccccCccchhhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhcCC
Q 004253 575 KMGAIVHTMT---NRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGG 651 (765)
Q Consensus 575 ~~~~~~~~l~---~~~~~~~~v~f~enHD~~r~g~kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltlpG 651 (765)
... ....++ -..+.++.| |++|||+++.+++++..- |+.+.+ ...+..|++.++++|+||
T Consensus 398 r~~-~~~~lt~~~~y~~~e~~i-l~~SHDev~~~k~sl~~k-~~g~~~--------------~~~a~~r~~~~~~~t~PG 460 (639)
T PRK14706 398 RKY-HHHKLTFFNVYRTSENYV-LAISHDEVVHLKKSMVMK-MPGDWY--------------TQRAQYRAFLAMMWTTPG 460 (639)
T ss_pred hhh-chhccchhhhhhccccEe-cCCCCccccCCccchHhH-cCCCHH--------------HHHHHHHHHHHHHHhCCC
Confidence 111 111111 123334444 889999999988765432 332222 234566788889999999
Q ss_pred cceeecccccccCC-CCCCCCCCCCCCCCCCcCCCCCCCCcCCccccCCCCccccccccHHHHHHHHHHHHHHcCCCC
Q 004253 652 EAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMT 728 (765)
Q Consensus 652 ~P~l~yyGdE~G~~-e~~d~p~~~~~dp~~~~~~gn~~s~~~~R~~~~w~~~~~~~~~~l~~f~r~Li~lRk~~~~L~ 728 (765)
.|+| |||+|||+. +| .++++++|...+...++.|++|+|+||+||+++++|.
T Consensus 461 ~pLi-FmG~EfG~~~ew------------------------~~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~paL~ 513 (639)
T PRK14706 461 KKLL-FMGQEFAQGTEW------------------------NHDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPDWH 513 (639)
T ss_pred CcEE-EeccccCCCCCC------------------------CcccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHHHh
Confidence 9999 999999974 33 2567788887666667789999999999999999994
No 7
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.4e-84 Score=786.36 Aligned_cols=505 Identities=27% Similarity=0.488 Sum_probs=418.6
Q ss_pred hhhcccccCCcEEe--------CCcEEEEEecCCcCeEEEEeecCCCCCCccCCccC-CCceEEEEeCCCCCCCCCCCCC
Q 004253 188 AFSRGYEKFGFIRS--------DTGITYREWAPGAKSASLIGDFNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHG 258 (765)
Q Consensus 188 ~fa~gy~~lG~~~~--------~~gv~FrvWAP~A~~V~L~gdFN~w~~~~~~m~~~-~~GvW~i~lp~~~~G~~~~~~g 258 (765)
.+.+.|+.||+|.. .+||+|+||||+|++|+|+||||+|+...++|.+. +.|+|+++||+..+ |
T Consensus 615 ~~~~~y~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~-------G 687 (1224)
T PRK14705 615 RHEKLWDVLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVA-------G 687 (1224)
T ss_pred chhhHHHhcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCC-------C
Confidence 67778999999973 34899999999999999999999999988999874 57999999998765 6
Q ss_pred CEEEEEeeCCCCc-cccCCccceeeccCCCCCCCCcEEeCCCccccccccCC-----CC---CCCCCceEEEeecCCCCC
Q 004253 259 SRVKIHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHP-----QP---KKPKSLRIYEAHVGMSST 329 (765)
Q Consensus 259 ~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~-----~~---~~~~~~vIYE~hv~~~s~ 329 (765)
..|||++.+..|. ....|||+.+....+.. .++++|+. |.|++. +. ...++++|||+|||+|+.
T Consensus 688 ~~Yky~i~~~~g~~~~k~DPyA~~~e~~p~~---aS~V~d~~----~~w~d~~W~~~r~~~~~~~~p~~IYEvHvgsf~~ 760 (1224)
T PRK14705 688 ACYKFEILTKAGQWVEKADPLAFGTEVPPLT---ASRVVEAS----YAFKDAEWMSARAERDPHNSPMSVYEVHLGSWRL 760 (1224)
T ss_pred CEEEEEEEcCCCcEEecCCccccccccCCCC---CeEEeCCC----CCcCChhhhhccccCCCCcCCcEEEEEEeccccc
Confidence 6899999887654 46789999877665543 68899873 666543 21 123689999999999987
Q ss_pred CCCCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecc
Q 004253 330 EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (765)
Q Consensus 330 ~~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~ 409 (765)
.++|++++++.|||||+|||||||||||+|++..++|||++++||+|+++|||++|||+||++||++||+||||+|+
T Consensus 761 ---~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~ 837 (1224)
T PRK14705 761 ---GLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVP 837 (1224)
T ss_pred ---CCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 38999999766899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccCcCCCCCCCCCcccCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccC
Q 004253 410 SHASNNVLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHG 488 (765)
Q Consensus 410 NH~~~~~~~~~~~f~g~~~~yf~~~~-~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g 488 (765)
||++.+. +++..|+|+. .|++.++ .+.+..|++..||+++++||+||+++++||++||||||||||+|++|+|.+++
T Consensus 838 nH~~~d~-~~l~~fdg~~-~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dys 915 (1224)
T PRK14705 838 AHFPKDS-WALAQFDGQP-LYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYS 915 (1224)
T ss_pred ccCCcch-hhhhhcCCCc-ccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccc
Confidence 9998764 5777888864 4555554 47888999999999999999999999999999999999999999999998877
Q ss_pred ccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeeccCCCCccccccccCCcccchhhhHHHHHHHHHHHh
Q 004253 489 LQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLK 568 (765)
Q Consensus 489 ~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~~~p~~~~~~~~gg~gfD~~l~~~~~d~~~~~lk 568 (765)
...+.+ ..+.+|+.+|.+++.||+++|+.+++.+|++++|||+++.+|.++++...||+||||+|+|.|++...++++
T Consensus 916 r~~g~w--~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~kWnmgwmhd~l~Y~~ 993 (1224)
T PRK14705 916 REEGQW--RPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGFGLKWNMGWMHDSLKYAS 993 (1224)
T ss_pred cccccc--cccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCccccccCCCccCCcEecchhhHHHHHHhh
Confidence 654332 346778999999999999999999999999999999999999999999999999999999999998888887
Q ss_pred hh--hhhhhhhhhHhhhccccccccceecccCccccccCccchhhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHH
Q 004253 569 KR--DEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVT 646 (765)
Q Consensus 569 ~~--~~~~~~~~~~~~l~~~~~~~~~v~f~enHD~~r~g~kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lll 646 (765)
.. ...|....+.+.+.. .+.++.+ +..|||++..|++++ ...|+.+++.++ +..|++.+++
T Consensus 994 ~dp~~r~~~~~~ltf~~~y-a~~e~fv-l~~SHDevvhgk~sl-~~km~Gd~~~k~--------------a~lR~~~a~~ 1056 (1224)
T PRK14705 994 EDPINRKWHHGTITFSLVY-AFTENFL-LPISHDEVVHGKGSM-LRKMPGDRWQQL--------------ANLRAFLAYQ 1056 (1224)
T ss_pred hCcchhhcccchHHHHHHH-HhhcCEe-cccccccccccchhH-HHhCCCcHHHHH--------------HHHHHHHHHH
Confidence 52 345666666555553 2445544 678999998887665 345666666544 3457788899
Q ss_pred HhcCCcceeecccccccCC-CCCCCCCCCCCCCCCCcCCCCCCCCcCCccccCCCCccccccccHHHHHHHHHHHHHHcC
Q 004253 647 MGLGGEAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYG 725 (765)
Q Consensus 647 ltlpG~P~l~yyGdE~G~~-e~~d~p~~~~~dp~~~~~~gn~~s~~~~R~~~~w~~~~~~~~~~l~~f~r~Li~lRk~~~ 725 (765)
+++||.|+| |||+|||+. +|. ...+++|...++..++.++.|+|+||+||+++|
T Consensus 1057 ~~~PGk~Ll-FMG~Efgq~~ew~------------------------~~~~LdW~ll~~~~h~~~~~~~rdLn~ly~~~p 1111 (1224)
T PRK14705 1057 WAHPGKQLI-FMGTEFGQEAEWS------------------------EQHGLDWFLADIPAHRGIQLLTKDLNELYTSTP 1111 (1224)
T ss_pred HhcCCcCEE-ECccccCCCCCcc------------------------ccccCCCcccCChhhHHHHHHHHHHHHHHhcCh
Confidence 999999988 999999995 552 235689988887789999999999999999999
Q ss_pred CCCCCC-------------------eEEEEEcCCCEEEEEEecCCcccc
Q 004253 726 FMTSEH-------------------QYVSRKDQGDRGGMMTDLIPSWYM 755 (765)
Q Consensus 726 ~L~~~~-------------------~~i~~~~~~~~vlvf~r~sp~~~~ 755 (765)
+|.... +++++...++.|++++||+|+.+-
T Consensus 1112 aL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp~~~~ 1160 (1224)
T PRK14705 1112 ALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSGGPHK 1160 (1224)
T ss_pred hhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCCCCcc
Confidence 993211 223332334568999999997765
No 8
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.1e-79 Score=730.97 Aligned_cols=537 Identities=27% Similarity=0.489 Sum_probs=418.0
Q ss_pred CCCcceecCCCCccchHHHHHHHHHHHHHHHHHHhccCchhhhhcccccCCcEEeC----CcEEEEEecCCcCeEEEEee
Q 004253 147 AGQNIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSD----TGITYREWAPGAKSASLIGD 222 (765)
Q Consensus 147 ~~~~~~~~dp~l~~~~~~l~~R~~~~~~~~~~i~~~~g~l~~fa~gy~~lG~~~~~----~gv~FrvWAP~A~~V~L~gd 222 (765)
+|..+.+.|||-.+. .+.. ..+..+ .+| .+.+.|+.||+|+.. +||+||||||+|++|+|+||
T Consensus 84 ~g~~~~k~DPyaf~~--~~~~------~~~~~~--~~g---~~~~~~~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~gd 150 (726)
T PRK05402 84 GGGEQLIDDPYRFGP--LLGE------LDLYLF--GEG---THLRLYETLGAHPVTVDGVSGVRFAVWAPNARRVSVVGD 150 (726)
T ss_pred CCceeEeccccccCC--CCCH------HHHHHH--hCC---ccchhhhccccEEeccCCCCcEEEEEECCCCCEEEEEEE
Confidence 556688999997754 1111 111112 234 677889999999985 78999999999999999999
Q ss_pred cCCCCCCccCCccC-CCceEEEEeCCCCCCCCCCCCCCEEEEEeeCCCCc-cccCCccceeeccCCCCCCCCcEEeCCCc
Q 004253 223 FNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPE 300 (765)
Q Consensus 223 FN~w~~~~~~m~~~-~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dp~~ 300 (765)
||+|+...++|++. +.|+|+++||+.. +|..|+|++...++. .+..+||+......+.. .++++|++
T Consensus 151 fn~w~~~~~~m~~~~~~Gvw~~~i~~~~-------~g~~Y~y~v~~~~g~~~~~~DPYa~~~~~~~~~---~s~v~d~~- 219 (726)
T PRK05402 151 FNGWDGRRHPMRLRGESGVWELFIPGLG-------EGELYKFEILTADGELLLKADPYAFAAEVRPAT---ASIVADLS- 219 (726)
T ss_pred cCCCCCccccceEcCCCCEEEEEeCCCC-------CCCEEEEEEeCCCCcEeecCCCceEEEecCCCC---cEEEeCCc-
Confidence 99999888899998 7899999999754 477899999876543 46889999887766544 58899974
Q ss_pred cccccccCCCC--------CCCCCceEEEeecCCCCCC---CCCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCC
Q 004253 301 EEKYVFQHPQP--------KKPKSLRIYEAHVGMSSTE---PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASF 369 (765)
Q Consensus 301 ~~~~~~~~~~~--------~~~~~~vIYE~hv~~~s~~---~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~ 369 (765)
.|.|++... ...++++|||+|||+|+.+ ++.|||++++++.|||||+||||+||||||++++...+|
T Consensus 220 --~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~ 297 (726)
T PRK05402 220 --QYQWNDAAWMEKRAKRNPLDAPISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSW 297 (726)
T ss_pred --cCCCCCcchhhcccccCcccCCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCC
Confidence 577765432 1336799999999999853 457999999954459999999999999999999988899
Q ss_pred CCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCC-CCCcccCCCCCCC
Q 004253 370 GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFN 448 (765)
Q Consensus 370 GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~-~g~~~~w~~~~ln 448 (765)
||++++||+|+++|||++|||+||++||++||+||||+|+||++.+. .++..|+++. .|++.+. .+.+..|+...||
T Consensus 298 GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~-~~~~~~~~~~-~y~~~~~~~~~~~~w~~~~~n 375 (726)
T PRK05402 298 GYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDA-HGLARFDGTA-LYEHADPREGEHPDWGTLIFN 375 (726)
T ss_pred CCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc-cchhccCCCc-ceeccCCcCCccCCCCCcccc
Confidence 99999999999999999999999999999999999999999998764 4566777763 4444333 4567789888999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCce
Q 004253 449 YGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAV 528 (765)
Q Consensus 449 ~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i 528 (765)
+++|+||++|+++++||++||||||||||++.+|++.+++...+.+ .++.+++..+.+++.||+++++.+++.+|+++
T Consensus 376 ~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~ 453 (726)
T PRK05402 376 YGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEW--IPNIYGGRENLEAIDFLRELNAVVHEEFPGAL 453 (726)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcccccccccc--ccccccCcCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 9999999999999999999999999999999999988877655432 23455667788899999999999999999999
Q ss_pred EEeeccCCCCccccccccCCcccchhhhHHHHHHHHHHHhhh--hhhhhhhhhHhhhccccccccceecccCccccccCc
Q 004253 529 SIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKR--DEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGD 606 (765)
Q Consensus 529 ~iaE~~~~~p~~~~~~~~gg~gfD~~l~~~~~d~~~~~lk~~--~~~~~~~~~~~~l~~~~~~~~~v~f~enHD~~r~g~ 606 (765)
+|||+++.++.++.+...+|+|||+.+++.+++..+++++.. ...+....+...+.. .+.++. .+++|||+++.++
T Consensus 454 liaE~~~~~~~~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~-~l~~sHD~~~~g~ 531 (726)
T PRK05402 454 TIAEESTAWPGVTRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFSLLY-AYSENF-VLPLSHDEVVHGK 531 (726)
T ss_pred EEEECCCCCcCccccccCCCCCCCceecCCcchHHHHHHhhCcccccccccchhHHHhH-hhhccc-cCCCCCceeeeCc
Confidence 999999999999999888999999999998887777776531 111211211111111 122333 4778999998888
Q ss_pred cchhhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhcCCcceeecccccccCCCCCCCCCCCCCCCCCCcCCCC
Q 004253 607 KTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGN 686 (765)
Q Consensus 607 kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G~~e~~d~p~~~~~dp~~~~~~gn 686 (765)
+++...+ ..+++ ...+..|++.+++||+||+|+| |||+|+|+....+
T Consensus 532 ~~l~~~~-~g~~~--------------~~~~~lrl~~~~~~t~pG~Pli-f~G~E~g~~~~~~----------------- 578 (726)
T PRK05402 532 GSLLGKM-PGDDW--------------QKFANLRAYYGYMWAHPGKKLL-FMGGEFGQGREWN----------------- 578 (726)
T ss_pred ccHHhhC-CCCHH--------------HHHHHHHHHHHHHHHCCCcCEe-eCchhcCCCCCCC-----------------
Confidence 7765332 22221 2355678888999999999999 9999999975311
Q ss_pred CCCCcCCccccCCCCccccccccHHHHHHHHHHHHHHcCCCCCCC-----------------eEE-EEEcC--CCEEEEE
Q 004253 687 NFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEH-----------------QYV-SRKDQ--GDRGGMM 746 (765)
Q Consensus 687 ~~s~~~~R~~~~w~~~~~~~~~~l~~f~r~Li~lRk~~~~L~~~~-----------------~~i-~~~~~--~~~vlvf 746 (765)
.+++++|...+...++.|++|+|+||+||+++|+|..+. .++ .|..+ +++|+|+
T Consensus 579 ------~~~~l~W~~~~~~~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlvv 652 (726)
T PRK05402 579 ------HDASLDWHLLDFPWHRGVQRLVRDLNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLVV 652 (726)
T ss_pred ------ccCcCCccccCCcchHHHHHHHHHHHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEEE
Confidence 246889987665678899999999999999999995321 121 22322 4678888
Q ss_pred EecCCccc
Q 004253 747 TDLIPSWY 754 (765)
Q Consensus 747 ~r~sp~~~ 754 (765)
.|+++..+
T Consensus 653 ~N~~~~~~ 660 (726)
T PRK05402 653 CNFTPVPR 660 (726)
T ss_pred EeCCCCcc
Confidence 88887653
No 9
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=8.9e-80 Score=723.55 Aligned_cols=507 Identities=29% Similarity=0.523 Sum_probs=400.0
Q ss_pred hhhcccccCCcEEeCC----cEEEEEecCCcCeEEEEeecCCCCCCccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEE
Q 004253 188 AFSRGYEKFGFIRSDT----GITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKI 263 (765)
Q Consensus 188 ~fa~gy~~lG~~~~~~----gv~FrvWAP~A~~V~L~gdFN~w~~~~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~ 263 (765)
.+.+.|+.||+|+... ||+||+|||+|++|+|+||||+|+...++|.+...|+|++++|+.. +|..|+|
T Consensus 19 ~~~~~~~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~-------~g~~Y~y 91 (633)
T PRK12313 19 EHFRLYEYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAK-------EGQLYKY 91 (633)
T ss_pred CcccchhcCCcEEeccCCcccEEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCCC-------CCCEEEE
Confidence 4456799999999887 8999999999999999999999998889999988999999999754 3678999
Q ss_pred EeeCCCCc-cccCCccceeeccCCCCCCCCcEEeCCCccccccccCCCC-----C---CCCCceEEEeecCCCCCC--CC
Q 004253 264 HMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQP-----K---KPKSLRIYEAHVGMSSTE--PI 332 (765)
Q Consensus 264 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~~~-----~---~~~~~vIYE~hv~~~s~~--~~ 332 (765)
++....+. ....+||+......+.. .++++||+ .|.|++... . ...+++|||+|||+|+.+ ++
T Consensus 92 ~v~~~~g~~~~~~DPya~~~~~~~~~---~s~v~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~ 165 (633)
T PRK12313 92 HISRQDGYQVEKIDPFAFYFEARPGT---ASIVWDLP---EYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNEDGR 165 (633)
T ss_pred EEECCCCeEEecCCCceEEEecCCCC---ceEECCCc---ccCCCChhhhhccccCCCCCCCceEEEEehhccccCCCCC
Confidence 99765553 46789999887665443 68999985 577776431 1 126799999999999754 45
Q ss_pred CCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccc
Q 004253 333 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (765)
Q Consensus 333 ~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~ 412 (765)
.|||++++++.|||||+||||+||||||++++...+|||++++||+|+++|||++|||+||++||++||+||||+|+||+
T Consensus 166 ~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~ 245 (633)
T PRK12313 166 PLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHF 245 (633)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 79999999644699999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCcccc
Q 004253 413 SNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVA 492 (765)
Q Consensus 413 ~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~ 492 (765)
+.++ .++..|+++..+++.....+++..|+..+||+++|+||++|+++++||++||||||||||+|.+|++.+++....
T Consensus 246 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~ 324 (633)
T PRK12313 246 PKDD-DGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGE 324 (633)
T ss_pred CCCc-ccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccC
Confidence 8764 355667775433333333456668888999999999999999999999999999999999999999877762222
Q ss_pred ccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeeccCCCCccccccccCCcccchhhhHHHHHHHHHHHhhh--
Q 004253 493 FTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKR-- 570 (765)
Q Consensus 493 f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~~~p~~~~~~~~gg~gfD~~l~~~~~d~~~~~lk~~-- 570 (765)
|.+ +.++...+.++++||+++++.+++.+|++++|||+++.++.++.+...+|+|||+++++.+.+.++.+++..
T Consensus 325 ~~~---~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~ 401 (633)
T PRK12313 325 WTP---NKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPI 401 (633)
T ss_pred cCC---cccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccccccccCCCCCcCceeCcHHHHHHHHHhhhCcc
Confidence 332 234556677889999999999999999999999999999999999999999999999999998887777532
Q ss_pred hhhhhhhhhHhhhccccccccceecccCccccccCccchhhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhcC
Q 004253 571 DEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLG 650 (765)
Q Consensus 571 ~~~~~~~~~~~~l~~~~~~~~~v~f~enHD~~r~g~kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltlp 650 (765)
...+....+...+.. .+.++. ++++|||+++.|++++...+ ..+++ ...+..|++.+++||+|
T Consensus 402 ~~~~~~~~~~~~~~~-~~~e~~-~l~~sHD~~~~g~~~~~~~~-~g~~~--------------~~~~~~r~~~~~~~t~p 464 (633)
T PRK12313 402 YRKYHHNLLTFSFMY-AFSENF-VLPFSHDEVVHGKKSLMHKM-PGDRW--------------QQFANLRLLYTYMITHP 464 (633)
T ss_pred ccccccccchHHHhh-hhhccc-ccCCCCcccccCCccHHHhc-CCCHH--------------HHHHHHHHHHHHHHhCC
Confidence 122322222222221 223333 46789999988877765432 22222 22456788888999999
Q ss_pred CcceeecccccccCCC-CCCCCCCCCCCCCCCcCCCCCCCCcCCccccCCCCccccccccHHHHHHHHHHHHHHcCCCCC
Q 004253 651 GEAYLNFMGNEFGHPE-WIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTS 729 (765)
Q Consensus 651 G~P~l~yyGdE~G~~e-~~d~p~~~~~dp~~~~~~gn~~s~~~~R~~~~w~~~~~~~~~~l~~f~r~Li~lRk~~~~L~~ 729 (765)
|+|+| |||+|+|+.. |. .+++++|...+...++.|++|+|+||+||+++|+|..
T Consensus 465 G~Pli-f~G~E~g~~~~~~------------------------~~~~l~W~~~~~~~~~~l~~~~r~Li~LRr~~paL~~ 519 (633)
T PRK12313 465 GKKLL-FMGSEFGQFLEWK------------------------HDESLEWHLLEDPMNAGMQRFTSDLNQLYKDEPALWE 519 (633)
T ss_pred CCcEe-ecccccccCccCC------------------------ccCCCCccccCChhHHHHHHHHHHHHHHHHhChHhhc
Confidence 99999 9999999854 31 1257888876666788999999999999999999952
Q ss_pred CC-----------------eE-EEEEc--CCCEEEEEEecCCcc
Q 004253 730 EH-----------------QY-VSRKD--QGDRGGMMTDLIPSW 753 (765)
Q Consensus 730 ~~-----------------~~-i~~~~--~~~~vlvf~r~sp~~ 753 (765)
+. .+ ..|.. +++.++|+.|+++..
T Consensus 520 ~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~~~ 563 (633)
T PRK12313 520 LDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTPVE 563 (633)
T ss_pred ccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCCCc
Confidence 21 11 12333 456677778887643
No 10
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=4e-79 Score=714.00 Aligned_cols=509 Identities=28% Similarity=0.523 Sum_probs=395.1
Q ss_pred hhhcccccCCcEEeC----CcEEEEEecCCcCeEEEEeecCCCCCCccCCccCC-CceEEEEeCCCCCCCCCCCCCCEEE
Q 004253 188 AFSRGYEKFGFIRSD----TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNE-FGVWEIFLPNNADGSPPIPHGSRVK 262 (765)
Q Consensus 188 ~fa~gy~~lG~~~~~----~gv~FrvWAP~A~~V~L~gdFN~w~~~~~~m~~~~-~GvW~i~lp~~~~G~~~~~~g~~y~ 262 (765)
++...|+.||+|+.. +|++||||||+|++|+|++|||+|+...++|.+.+ .|+|+++||+.. +|..|+
T Consensus 9 ~~~~~~~~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~-------~g~~Y~ 81 (613)
T TIGR01515 9 SHFRSYELLGSHYMELDGVSGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIG-------EGELYK 81 (613)
T ss_pred ccCChHHhcCceEeccCCcCcEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCC-------CCCEEE
Confidence 456678999999987 78999999999999999999999988888998874 899999999754 477999
Q ss_pred EEeeCCCCc-cccCCccceeeccCCCCCCCCcEEeCCCc--cccccccCCCC-CCC--CCceEEEeecCCCCCCCCCCCH
Q 004253 263 IHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPE--EEKYVFQHPQP-KKP--KSLRIYEAHVGMSSTEPIINTY 336 (765)
Q Consensus 263 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dp~~--~~~~~~~~~~~-~~~--~~~vIYE~hv~~~s~~~~~Gt~ 336 (765)
|++....+. ....|||++.....+.. .++++||.. +.+..|+..++ ..| ++++|||+|||+|+.+ |||
T Consensus 82 y~v~~~~g~~~~~~DPYA~~~~~~~~~---~s~v~d~~~~~w~~~~w~~~~~~~~~~~~~~~iYe~hv~~~~~~---g~~ 155 (613)
T TIGR01515 82 YEIVTNNGEIRLKADPYAFYAEVRPNT---ASLVYDLEGYSWQDQKWQEKRKAKTPYEKPVSIYELHLGSWRHG---LSY 155 (613)
T ss_pred EEEECCCCcEEEeCCCCEeeeccCCCC---cEEEECCccCccCchhhhhcccccCcccCCceEEEEehhhccCC---CCH
Confidence 999876543 46789999877655433 578888752 12223443322 222 4689999999999764 999
Q ss_pred HhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccCCC
Q 004253 337 ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNV 416 (765)
Q Consensus 337 ~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~ 416 (765)
++++++.|||||+||||+||||||++++...+|||++++||+|+++|||++|||+||++||++||+||||+|+||++.+.
T Consensus 156 ~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~ 235 (613)
T TIGR01515 156 RELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDD 235 (613)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCcc
Confidence 99995335999999999999999999998889999999999999999999999999999999999999999999999764
Q ss_pred cccCcCCCCCCCCCcccCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccC
Q 004253 417 LDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTG 495 (765)
Q Consensus 417 ~~~~~~f~g~~~~yf~~~~-~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~ 495 (765)
..+..|++.. .|++.+. .+.++.|+.++||+++|+||++|+++++||++||||||||||+|++|++.++|...+.+.
T Consensus 236 -~~~~~~~~~~-~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~ 313 (613)
T TIGR01515 236 -HGLAEFDGTP-LYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWS 313 (613)
T ss_pred -chhhccCCCc-ceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhcccccccccc
Confidence 3455666653 4444433 356678999999999999999999999999999999999999999999888776554321
Q ss_pred CCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeeccCCCCccccccccCCcccchhhhHHHHHHHHHHHhhh--hhh
Q 004253 496 NYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKR--DED 573 (765)
Q Consensus 496 ~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~~~p~~~~~~~~gg~gfD~~l~~~~~d~~~~~lk~~--~~~ 573 (765)
. +..+...+.+++.||+++++.+++.+|++++|||+++.++.++.+...+|+|||+++++.+...++.+++.. ...
T Consensus 314 -~-~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~ 391 (613)
T TIGR01515 314 -P-NEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDPVERQ 391 (613)
T ss_pred -c-cccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCccccccccCCcCCcCeeeCchHHHHHHHHHhhChhhHh
Confidence 1 234566788899999999999999999999999999999999999999999999999999888777776431 111
Q ss_pred hhhhhhHhhhccccccccceecccCccccccCccchhhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhcCCcc
Q 004253 574 WKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEA 653 (765)
Q Consensus 574 ~~~~~~~~~l~~~~~~~~~v~f~enHD~~r~g~kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltlpG~P 653 (765)
+....+...+. ..+.++.+ +++|||+++.|++++.... ..+. ....+..|++++++|++||+|
T Consensus 392 ~~~~~~~~~~~-~~~~e~~~-~~~sHD~~~~g~~~i~~~~-~g~~--------------~~~~~~~r~~~~~~~t~pG~p 454 (613)
T TIGR01515 392 YHHQLITFSML-YAFSENFV-LPLSHDEVVHGKKSLLNKM-PGDY--------------WQKFANYRALLGYMWAHPGKK 454 (613)
T ss_pred hccccccHHHH-HHhhhccc-cCCCCCCcccCcccHHHhC-CCch--------------HHHHHHHHHHHHHHHhCCCCC
Confidence 11111111111 12223333 7899999988887765432 2111 112456788888999999999
Q ss_pred eeecccccccCC-CCCCCCCCCCCCCCCCcCCCCCCCCcCCccccCCCCccccccccHHHHHHHHHHHHHHcCCCCCC--
Q 004253 654 YLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSE-- 730 (765)
Q Consensus 654 ~l~yyGdE~G~~-e~~d~p~~~~~dp~~~~~~gn~~s~~~~R~~~~w~~~~~~~~~~l~~f~r~Li~lRk~~~~L~~~-- 730 (765)
+| |||+|+|+. +|. .+++++|...+...++.|++|+|+||+||+++|+|..+
T Consensus 455 li-f~G~E~g~~~~~~------------------------~~~~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~paL~~~~~ 509 (613)
T TIGR01515 455 LL-FMGSEFAQGSEWN------------------------DTEQLDWHLLSFPMHQGVSVFVRDLNRTYQKSKALYEHDF 509 (613)
T ss_pred EE-EcchhcCcCCCCC------------------------CCccCCCccccCcccHHHHHHHHHHHHHHhhCHHhhccCC
Confidence 99 999999994 441 12578887666667889999999999999999988421
Q ss_pred --------------C-eEE-EEEc--CCCEEEEEEecCCcccc
Q 004253 731 --------------H-QYV-SRKD--QGDRGGMMTDLIPSWYM 755 (765)
Q Consensus 731 --------------~-~~i-~~~~--~~~~vlvf~r~sp~~~~ 755 (765)
. .++ .|.. .++.|+++.|+++..+.
T Consensus 510 ~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~~~~~ 552 (613)
T TIGR01515 510 DPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTPVVRH 552 (613)
T ss_pred CCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCCCCcc
Confidence 1 122 2332 24568888888887543
No 11
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-78 Score=689.73 Aligned_cols=448 Identities=32% Similarity=0.547 Sum_probs=370.2
Q ss_pred hhhcccccCCcEEeCC---cEEEEEecCCcCeEEEEeecCCCCCCccCCccC-CCceEEEEeCCCCCCCCCCCCCCEEEE
Q 004253 188 AFSRGYEKFGFIRSDT---GITYREWAPGAKSASLIGDFNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVKI 263 (765)
Q Consensus 188 ~fa~gy~~lG~~~~~~---gv~FrvWAP~A~~V~L~gdFN~w~~~~~~m~~~-~~GvW~i~lp~~~~G~~~~~~g~~y~~ 263 (765)
...+-|++||+|..+. |++|+||||+|+.|+|+||||+|+...++|... ++|+|+++||+..+ |.+|||
T Consensus 18 ~~~~~~~~~GA~~~~~g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~-------G~~Yky 90 (628)
T COG0296 18 THLRLYEKLGAHPIENGVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPP-------GTRYKY 90 (628)
T ss_pred cchhhHhhhCcccccCCCCceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCC-------CCeEEE
Confidence 3455678999998654 599999999999999999999999988888754 78999999998655 679999
Q ss_pred EeeCCCCc-cccCCccceeeccCCCCCCCCcEEeCCCccccccccCC----CC--CCCCCceEEEeecCCCCCCCCCCCH
Q 004253 264 HMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHP----QP--KKPKSLRIYEAHVGMSSTEPIINTY 336 (765)
Q Consensus 264 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~----~~--~~~~~~vIYE~hv~~~s~~~~~Gt~ 336 (765)
++.++.|. ....+|++++....+.+ .+++++++ .|.|++. .. +..++++|||+|||+|+.+ ..-+|
T Consensus 91 ~l~~~~g~~~~~~DP~a~~~~~~p~~---aS~v~~~~---~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~-~~~~~ 163 (628)
T COG0296 91 ELIDPSGQLRLKADPYARRQEVGPHT---ASQVVDLP---DYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPD-RFLGY 163 (628)
T ss_pred EEeCCCCceeeccCchhhccCCCCCC---cceecCCC---CcccccccccccccCCCCCCceEEEEEeeeccCC-CCcCH
Confidence 99998874 35667888877666655 68888875 3777633 22 2237899999999999985 54455
Q ss_pred HhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccCCC
Q 004253 337 ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNV 416 (765)
Q Consensus 337 ~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~ 416 (765)
.++++++|||||+||||||+||||.|||++.||||+++.||||+++||||++||+||++||++||.||||+|+||++.+.
T Consensus 164 ~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~ 243 (628)
T COG0296 164 FELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDG 243 (628)
T ss_pred HHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCc
Confidence 55555899999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred cccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCC
Q 004253 417 LDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGN 496 (765)
Q Consensus 417 ~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~ 496 (765)
.++..|+|+.-+.+....++.++.|++..+|+++++||+||+++++||+++|||||||+|+|.+|+|.++.+.. ....
T Consensus 244 -~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~-~~~~ 321 (628)
T COG0296 244 -NYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAE-GEWV 321 (628)
T ss_pred -chhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhh-hccc
Confidence 68899999876666666678999999999999999999999999999999999999999999999998754432 1122
Q ss_pred CCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeeccCCCCccccccccCCcccchhhhHHHHHHHHHHHhhh--hhhh
Q 004253 497 YSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKR--DEDW 574 (765)
Q Consensus 497 ~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~~~p~~~~~~~~gg~gfD~~l~~~~~d~~~~~lk~~--~~~~ 574 (765)
.+ ..|+..+.++++|++.+|+.++...|++++|+|+|+.++..+.+...+|+||+|+++|+++.....++.+. ...+
T Consensus 322 ~n-~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~nmg~m~D~~~y~~~~~~~r~~ 400 (628)
T COG0296 322 PN-EYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWNMGWMHDTLFYFGKDPVYRKY 400 (628)
T ss_pred cc-ccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCceeeecccccchhhhhhhhhHhhHHHhcccCcccccc
Confidence 33 34667899999999999999999999999999999999999999999999999999999887666666542 3345
Q ss_pred hhhhhHhhhccccccccceecccCccccccCccchhhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhcCCcce
Q 004253 575 KMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAY 654 (765)
Q Consensus 575 ~~~~~~~~l~~~~~~~~~v~f~enHD~~r~g~kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltlpG~P~ 654 (765)
..+.+...+. .-.+..+.|+.|||++..|++++..++.... ....+..|.+.++|+++||+|.
T Consensus 401 ~h~~~tf~~~--y~~se~~~l~~sHDevvhGk~sl~~rm~g~~---------------~~~~a~lr~~~a~~~~~Pgk~L 463 (628)
T COG0296 401 HHGELTFGLL--YAFSENVVLPLSHDEVVHGKRSLGERMPGDA---------------WQKFANLRALAAYMWLHPGKPL 463 (628)
T ss_pred ccCCCccccc--cccceeEeccccccceeecccchhccCCcch---------------hhhHHHHHHHHHHHHhCCCcee
Confidence 5554443332 1123557899999999889998776543332 1235666888899999999999
Q ss_pred eecccccccC-CCCCCC
Q 004253 655 LNFMGNEFGH-PEWIDF 670 (765)
Q Consensus 655 l~yyGdE~G~-~e~~d~ 670 (765)
| |||+|||+ .+|..+
T Consensus 464 L-FMG~Efgq~~e~~~~ 479 (628)
T COG0296 464 L-FMGEEFGQGREWNFF 479 (628)
T ss_pred e-ecchhhccCCCCccc
Confidence 9 99999999 477544
No 12
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=3.2e-71 Score=647.60 Aligned_cols=491 Identities=18% Similarity=0.266 Sum_probs=353.2
Q ss_pred cCCcEEeCCcEEEEEecCCcCeEEEEeecCCCCCC----ccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeCCCC
Q 004253 195 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPN----ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 270 (765)
Q Consensus 195 ~lG~~~~~~gv~FrvWAP~A~~V~L~gdFN~w~~~----~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~~~ 270 (765)
+||+++..+|++|+||||+|++|+|++ |++|+.. .++|.+..+|||+++||+.. +|..|+|+++..+.
T Consensus 11 ~lG~~~~~~~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~-------~g~~Y~y~v~~~~~ 82 (605)
T TIGR02104 11 ELGAVYTPEKTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDL-------HGYFYTYQVCINGK 82 (605)
T ss_pred CCccEEECCeeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCC-------CCCEEEEEEEcCCC
Confidence 799999999999999999999999998 8887542 57899988999999999764 47799999987655
Q ss_pred ccccCCccceeeccCCCCCCCCcEEeCCCccccccccCCC---CCCCCCceEEEeecCCCCCCCC-----CCCHHhhHhh
Q 004253 271 IKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQ---PKKPKSLRIYEAHVGMSSTEPI-----INTYANFRDD 342 (765)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~~---~~~~~~~vIYE~hv~~~s~~~~-----~Gt~~~~~~~ 342 (765)
.....+||++...... -.++++|+...+.+.|...+ +..+++++|||+|||+|+..++ .|||++++++
T Consensus 83 ~~~~~DPya~~~~~~~----~~s~v~d~~~~~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~ 158 (605)
T TIGR02104 83 WRETVDPYAKAVTVNG----KRGAVIDLERTNPEGWEKDHRPRLENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTET 158 (605)
T ss_pred eEEEcCCCcceeccCC----CcEEEEcccccCccCcccccCCCCCChhHcEEEEEecchhccCCCCCcCCCCceeeeecc
Confidence 5567899998654332 25888998655566776543 3345789999999999986543 5899999852
Q ss_pred ----------hhhHHHHcCCCEEEECCcccCCC--------CCCCCCccccccCCCCCCCC--------HHHHHHHHHHH
Q 004253 343 ----------VLPRIKRLGYNAVQIMAVQEHSY--------YASFGYHVTNFFAPSSRCGT--------PDDLKSLIDKA 396 (765)
Q Consensus 343 ----------~L~yLk~LGvt~I~L~Pi~e~~~--------~~~~GY~~~~~~a~~~~~Gt--------~~efk~LV~~a 396 (765)
+|||||+||||+||||||++++. ..+|||++++||+|+++||+ ++|||+||++|
T Consensus 159 ~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~ 238 (605)
T TIGR02104 159 GTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQAL 238 (605)
T ss_pred CccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHH
Confidence 49999999999999999999864 23699999999999999997 58999999999
Q ss_pred hhcCCEEEEeeccccccCCCcccCcCCCCCCCCCccc-CCCCCcc-cC-CCCCCCCCCHHHHHHHHHHHHHHHHHcCCcE
Q 004253 397 HELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHS-GSRGYHW-MW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDG 473 (765)
Q Consensus 397 H~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~-~~~g~~~-~w-~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDG 473 (765)
|++||+||||||+||++... ...|++..+.||.. +..+... .+ ...++|+.+|+||++|+++++||++||||||
T Consensus 239 H~~Gi~VilDvV~NH~~~~~---~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDG 315 (605)
T TIGR02104 239 HENGIRVIMDVVYNHTYSRE---ESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDG 315 (605)
T ss_pred HHCCCEEEEEEEcCCccCCC---CCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999998542 23577766665542 3333211 11 2357999999999999999999999999999
Q ss_pred EEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeeccCCCCcccccccc-------
Q 004253 474 FRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQD------- 546 (765)
Q Consensus 474 FRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~~~p~~~~~~~~------- 546 (765)
||||++.++ ..+||+++++.+++..|++++|||.|...+.+......
T Consensus 316 fR~D~~~~~--------------------------~~~~~~~~~~~~~~~~p~~~ligE~w~~~~~~~~~~~~~~~~~~~ 369 (605)
T TIGR02104 316 FRFDLMGIH--------------------------DIETMNEIRKALNKIDPNILLYGEGWDLGTPLPPEQKATKANAYQ 369 (605)
T ss_pred EEEechhcC--------------------------CHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcchhhhhhhhccCC
Confidence 999998665 13589999999999999999999999765443221100
Q ss_pred -CCc-ccchhhhHHHHHHHH-----HHHhhhhhhhhhhhhHhhhcc----------ccccccceecccCccccccCccch
Q 004253 547 -GGV-GFDYRLQMAIADKWI-----ELLKKRDEDWKMGAIVHTMTN----------RRWLEKCVAYAESHDQALVGDKTI 609 (765)
Q Consensus 547 -gg~-gfD~~l~~~~~d~~~-----~~lk~~~~~~~~~~~~~~l~~----------~~~~~~~v~f~enHD~~r~g~kt~ 609 (765)
.+. -|++.+..++.+... .++++.. .....+...+.. ...+..+|+|++|||+.|+.++..
T Consensus 370 ~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~--~~~~~l~~~l~~~~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~ 447 (605)
T TIGR02104 370 MPGIAFFNDEFRDALKGSVFHLKKKGFVSGNP--GTEETVKKGILGSIELDAVKPSALDPSQSINYVECHDNHTLWDKLS 447 (605)
T ss_pred CCceEEECCcchhhhcCCccccccCceecCCC--CcHHHHHhheeCChhhcccccccCChhheEEEEEecCCCCHHHHHH
Confidence 111 144444333321000 0111000 011112222211 123457899999999988865411
Q ss_pred hhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhcCCcceeecccccccCCCCCCCCCCCCCCCCCCcCCCCCCC
Q 004253 610 AFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFS 689 (765)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G~~e~~d~p~~~~~dp~~~~~~gn~~s 689 (765)
. +.. ....+...++.|++.+++|++||+|+| |||||+|+.+. +++++
T Consensus 448 -~--~~~------------~~~~~~~~~r~rla~alllts~GiP~i-y~GdE~g~s~~-----------------g~~n~ 494 (605)
T TIGR02104 448 -L--ANP------------DETEEQLKKRQKLATAILLLSQGIPFL-HAGQEFMRTKQ-----------------GDENS 494 (605)
T ss_pred -h--hCC------------CCCHHHHHHHHHHHHHHHHHcCCCcee-ecchhhhccCC-----------------CCCCC
Confidence 0 000 011234567789999999999999999 99999999763 44444
Q ss_pred C--cCCccccCCCCccccccccHHHHHHHHHHHHHHcCCCCCCC-----------------eEE-EEEcCC-----CEEE
Q 004253 690 Y--DKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEH-----------------QYV-SRKDQG-----DRGG 744 (765)
Q Consensus 690 ~--~~~R~~~~w~~~~~~~~~~l~~f~r~Li~lRk~~~~L~~~~-----------------~~i-~~~~~~-----~~vl 744 (765)
| ..++++++|...+ .++.+++|+|+||+|||++|+|+.+. .+. .+...+ +.++
T Consensus 495 y~~~d~~~~ldW~~~~--~~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~~~~~~~~~ll 572 (605)
T TIGR02104 495 YNSPDSINQLDWDRKA--TFKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDHANGDPWKDII 572 (605)
T ss_pred ccCCCcccccCccccc--cchHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCCcCCCCcCeEE
Confidence 4 3467899997543 46689999999999999999987542 111 223222 3688
Q ss_pred EEEecCCccccc--cccchhc
Q 004253 745 MMTDLIPSWYMR--QAERLWS 763 (765)
Q Consensus 745 vf~r~sp~~~~~--~~~~~~~ 763 (765)
|+.|++...+-+ |.+..|.
T Consensus 573 Vv~N~s~~~~~v~lp~~~~w~ 593 (605)
T TIGR02104 573 VIHNANPEPVDIQLPSDGTWN 593 (605)
T ss_pred EEEeCCCCCeEEECCCCCCEE
Confidence 888887655543 3334454
No 13
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=1.2e-69 Score=624.94 Aligned_cols=475 Identities=25% Similarity=0.354 Sum_probs=344.2
Q ss_pred EEEEEecCCcCeEEEEeecCCCCCCccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeCCCCccccCCccceeecc
Q 004253 205 ITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQ 284 (765)
Q Consensus 205 v~FrvWAP~A~~V~L~gdFN~w~~~~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 284 (765)
|+||||||+|++|+|+++ + ..++|++.++|+|++++++..+ |..|+|++++ .....+||++....
T Consensus 1 v~FrlwAP~A~~V~L~l~---~--~~~~m~k~~~GvW~~~v~~~~~-------G~~Y~y~v~g---~~~v~DPya~~~~~ 65 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G--ALHAMQRLGDGWFEITVPPVGP-------GDRYGYVLDD---GTPVPDPASRRQPD 65 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C--CEEeCeECCCCEEEEEECCCCC-------CCEEEEEEee---eEEecCcccccccc
Confidence 589999999999999973 1 3679999999999999997654 6789999975 34567888776432
Q ss_pred CCCCCCCCcEEeCCCccccccccCCCCC--CCCCceEEEeecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEECCccc
Q 004253 285 APGEIPYNGIYYDPPEEEKYVFQHPQPK--KPKSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQE 362 (765)
Q Consensus 285 ~~~~~~~~~~~~dp~~~~~~~~~~~~~~--~~~~~vIYE~hv~~~s~~~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e 362 (765)
.. ...++++||. .|.|+++.+. ..++++|||+|||+|+. .|||++++ ++|||||+||||+||||||++
T Consensus 66 ~~---~~~S~V~d~~---~~~w~~~~~~~~~~~~~viYE~hv~~f~~---~G~~~gi~-~~l~yl~~LGv~~i~L~Pi~~ 135 (542)
T TIGR02402 66 GV---HGPSQVVDPD---RYAWQDTGWRGRPLEEAVIYELHVGTFTP---EGTFDAAI-EKLPYLADLGITAIELMPVAQ 135 (542)
T ss_pred CC---CCCeEEecCc---ccCCCCccccCCCccccEEEEEEhhhcCC---CCCHHHHH-HhhHHHHHcCCCEEEeCcccc
Confidence 22 2258899985 4888876542 34899999999999986 59999999 699999999999999999999
Q ss_pred CCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccC
Q 004253 363 HSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMW 442 (765)
Q Consensus 363 ~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w 442 (765)
++...+|||++++||+|+++|||++|||+||++||++||+||||+|+||++.++. .+..+ .+ ||... ....|
T Consensus 136 ~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~-~~~~~---~~-y~~~~---~~~~w 207 (542)
T TIGR02402 136 FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGN-YLPRY---AP-YFTDR---YSTPW 207 (542)
T ss_pred CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCccc-ccccc---Cc-cccCC---CCCCC
Confidence 9887889999999999999999999999999999999999999999999986541 12222 23 66432 23445
Q ss_pred CCCCCCCCCH---HHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHH
Q 004253 443 DSRLFNYGSW---EVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDM 519 (765)
Q Consensus 443 ~~~~ln~~~~---~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~ 519 (765)
+ +.+|++++ +||++|+++++||++||||||||||++..|.. .+...||+++++.
T Consensus 208 g-~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~----------------------~~~~~~l~~~~~~ 264 (542)
T TIGR02402 208 G-AAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIAD----------------------TSAKHILEELARE 264 (542)
T ss_pred C-CccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhcc----------------------ccHHHHHHHHHHH
Confidence 4 57999999 99999999999999999999999999987731 2346799999999
Q ss_pred HhhcCCC---ceEEeeccCCCCccccccccCCcccchhhhHHHHHHHHHHHhhhhhhh------hhhhhHhhhcc-----
Q 004253 520 IHGLYPE---AVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDW------KMGAIVHTMTN----- 585 (765)
Q Consensus 520 v~~~~p~---~i~iaE~~~~~p~~~~~~~~gg~gfD~~l~~~~~d~~~~~lk~~~~~~------~~~~~~~~l~~----- 585 (765)
+++..|+ +++|||.+...+..+.+...++++||..++..+.+.+...+.+....+ ....+...+..
T Consensus 265 ~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~ 344 (542)
T TIGR02402 265 VHELAAELRPVHLIAESDLNDPSLVTPREDGGYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYD 344 (542)
T ss_pred HHHHCCCCceEEEEEecCCCCCcccccccCCccceEEEECchHHHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccC
Confidence 9999999 999999998778777777777888888777666655555444321111 01111111110
Q ss_pred ----------c--c----ccccceecccCccccccCccchhhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhc
Q 004253 586 ----------R--R----WLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGL 649 (765)
Q Consensus 586 ----------~--~----~~~~~v~f~enHD~~r~g~kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltl 649 (765)
. . -+.+.|+|++|||+ +|+.++.-.+.. . .+.+++|++.+++|++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~vnfl~nHD~--~gn~~~~~Rl~~---------------~--~~~~~~~la~alllt~ 405 (542)
T TIGR02402 345 GEYSPFRGRPHGRPSGDLPPHRFVVFIQNHDQ--IGNRALGERLSQ---------------L--LSPGSLKLAAALLLLS 405 (542)
T ss_pred ccccccccccCCCCCCCCCHHHEEEEccCccc--ccccchhhhhhh---------------c--CCHHHHHHHHHHHHHc
Confidence 0 0 12467999999998 333221100000 0 0136778999999999
Q ss_pred CCcceeecccccccCCCCCC-CCCCCC-----------CCC------CCCcCCCCCCCCcCCccccCCCCccccccccHH
Q 004253 650 GGEAYLNFMGNEFGHPEWID-FPRGDQ-----------RLP------NGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQ 711 (765)
Q Consensus 650 pG~P~l~yyGdE~G~~e~~d-~p~~~~-----------~dp------~~~~~~gn~~s~~~~R~~~~w~~~~~~~~~~l~ 711 (765)
||+|+| |||+|+|+..... |-+... ... .....+........+|.+++|.......+..++
T Consensus 406 pGiP~I-y~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~~~~~~~~W~~~~~~~~~~~~ 484 (542)
T TIGR02402 406 PYTPLL-FMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVPDPQDEETFLRSKLDWAEAESGEHARWL 484 (542)
T ss_pred CCCcee-eccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCCCCCchhhHhhccCCcccccccchHHHH
Confidence 999999 9999999976321 111000 000 000001111122246788999876655678999
Q ss_pred HHHHHHHHHHHHcCCCCCCCe------------EEEEEcCCCEEEEEEecCCcccc
Q 004253 712 EFDRAMQHLEEKYGFMTSEHQ------------YVSRKDQGDRGGMMTDLIPSWYM 755 (765)
Q Consensus 712 ~f~r~Li~lRk~~~~L~~~~~------------~i~~~~~~~~vlvf~r~sp~~~~ 755 (765)
+|+|+||+|||++++|+.+.. .+.....+++++++.|+++..+-
T Consensus 485 ~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~~~~~ 540 (542)
T TIGR02402 485 AFYRDLLALRRELPVLLLPGARALEVVVDEDPGWVAVRFGRGELVLAANLSTSPVA 540 (542)
T ss_pred HHHHHHHHHhccCccccCCCcccceeeecCCCCEEEEEECCCeEEEEEeCCCCCcC
Confidence 999999999999999854431 11111345567888888775543
No 14
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=1.5e-67 Score=619.19 Aligned_cols=479 Identities=20% Similarity=0.278 Sum_probs=335.5
Q ss_pred ccCCcEEeCCcEEEEEecCCcCeEEEEeecCCCCC---CccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeCCC-
Q 004253 194 EKFGFIRSDTGITYREWAPGAKSASLIGDFNNWNP---NADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS- 269 (765)
Q Consensus 194 ~~lG~~~~~~gv~FrvWAP~A~~V~L~gdFN~w~~---~~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~~- 269 (765)
.+||+++.++||+|+||||+|++|+|+. |++++. ..++|++..+|||+++||+..+ |..|+|+++++.
T Consensus 5 ~~LGa~~~~~g~~F~vwap~A~~V~L~l-~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~-------g~~Y~yrv~g~~~ 76 (688)
T TIGR02100 5 FPLGATWDGQGVNFALFSANAEKVELCL-FDAQGEKEEARLPLPERTDDIWHGYLPGAQP-------GQLYGYRVHGPYD 76 (688)
T ss_pred cCCCeEEeCCcEEEEEECCCCCEEEEEE-EcCCCCceeeEEecccCCCCEEEEEECCCCC-------CCEEEEEEeeeeC
Confidence 4699999999999999999999999996 555432 2468999899999999998654 678999998631
Q ss_pred ---C-----ccccCCccceeeccCCC-------------------------CCCCCcEEeCCCccccccccCC--CCCC-
Q 004253 270 ---G-----IKDSIPAWIKFSVQAPG-------------------------EIPYNGIYYDPPEEEKYVFQHP--QPKK- 313 (765)
Q Consensus 270 ---~-----~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~dp~~~~~~~~~~~--~~~~- 313 (765)
| ....++||++....... .....++++|+ .|.|++. +|..
T Consensus 77 ~~~g~~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~----~~~w~~~~~~p~~~ 152 (688)
T TIGR02100 77 PENGHRFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVDP----DFDWGGDEQRPRTP 152 (688)
T ss_pred CCCCcccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeCC----CCCCCCcccCCCCC
Confidence 2 13568899876643311 00125777776 3788754 3333
Q ss_pred CCCceEEEeecCCCCCC------CCCCCHHhhHhh-hhhHHHHcCCCEEEECCcccCCCC---------CCCCCcccccc
Q 004253 314 PKSLRIYEAHVGMSSTE------PIINTYANFRDD-VLPRIKRLGYNAVQIMAVQEHSYY---------ASFGYHVTNFF 377 (765)
Q Consensus 314 ~~~~vIYE~hv~~~s~~------~~~Gt~~~~~~~-~L~yLk~LGvt~I~L~Pi~e~~~~---------~~~GY~~~~~~ 377 (765)
.+++||||+||++|+.. ...|||+|++++ +|||||+|||||||||||+++... ++|||+|.+||
T Consensus 153 ~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~ 232 (688)
T TIGR02100 153 WEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFF 232 (688)
T ss_pred ccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCccccc
Confidence 38899999999999853 235999999953 699999999999999999998542 46999999999
Q ss_pred CCCCCC---CCHHHHHHHHHHHhhcCCEEEEeeccccccCCCcccC-cCCCCCCC-CCcccCCC--CC--cccCCCCCCC
Q 004253 378 APSSRC---GTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-NMFDGTDG-HYFHSGSR--GY--HWMWDSRLFN 448 (765)
Q Consensus 378 a~~~~~---Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~-~~f~g~~~-~yf~~~~~--g~--~~~w~~~~ln 448 (765)
+|+++| |+++|||+||++||++||+||||+|+||++..+..+. ..+.+.++ .||+.... +. .+....+++|
T Consensus 233 a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln 312 (688)
T TIGR02100 233 APEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLN 312 (688)
T ss_pred ccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCcccccc
Confidence 999999 5799999999999999999999999999997653322 23444443 35543322 21 1112346899
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCce
Q 004253 449 YGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAV 528 (765)
Q Consensus 449 ~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i 528 (765)
+++|+|+++|+++++||++||||||||||++..|.+...+. +. ...+++.++.. ...|+++
T Consensus 313 ~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~----------------~~-~~~~~~~i~~d--~~~~~~~ 373 (688)
T TIGR02100 313 LSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGF----------------DM-LSGFFTAIRQD--PVLAQVK 373 (688)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCC----------------cc-cHHHHHHHHhC--cccCCeE
Confidence 99999999999999999999999999999999885432111 00 12456666542 4678999
Q ss_pred EEeeccCCCCccccccccCCcccc---hhhhHHHHHHHHHHHhhhhhhhhhhhhHhhhcc--------ccccccceeccc
Q 004253 529 SIGEDVSGMPTFCIPVQDGGVGFD---YRLQMAIADKWIELLKKRDEDWKMGAIVHTMTN--------RRWLEKCVAYAE 597 (765)
Q Consensus 529 ~iaE~~~~~p~~~~~~~~gg~gfD---~~l~~~~~d~~~~~lk~~~~~~~~~~~~~~l~~--------~~~~~~~v~f~e 597 (765)
+|||.|...+. .+..+ .|+ ..++..+.+.++.++++... ....+...+.+ .+-+.++|||++
T Consensus 374 ligE~W~~~~~---~~~~~--~~~~~~~~~Nd~frd~ir~f~~g~~~--~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~ 446 (688)
T TIGR02100 374 LIAEPWDIGPG---GYQVG--NFPPGWAEWNDRYRDDMRRFWRGDAG--MIGELANRLTGSSDLFEHNGRRPWASINFVT 446 (688)
T ss_pred EEEeeecCCCC---ccccc--CCCCceEEecHHHHHHHHHHHcCCCC--cHHHHHHHHhCCHhhccccCCCcCEEEEEEe
Confidence 99999964322 11111 132 22444555555556654211 11222222321 123457899999
Q ss_pred CccccccCccchhhh---ccChh---------hHhhhh--cCCCCCccchhhHHHHHHHHHHHHhcCCcceeeccccccc
Q 004253 598 SHDQALVGDKTIAFW---LMDKD---------MYDFMA--LDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFG 663 (765)
Q Consensus 598 nHD~~r~g~kt~~~~---~~~~~---------~~~~~~--~~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G 663 (765)
|||+.++.++..... ..+.+ .-+... +.+....+.....++.|++.+++|+++|+|+| |||||||
T Consensus 447 ~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i-~~GdE~g 525 (688)
T TIGR02100 447 AHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPML-LAGDEFG 525 (688)
T ss_pred CCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcee-eecHhhc
Confidence 999988765421100 00000 000000 00111112234467788999999999999999 9999999
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCCCCCc--CCccccCCCCccccccccHHHHHHHHHHHHHHcCCCCCC
Q 004253 664 HPEWIDFPRGDQRLPNGQFVPGNNFSYD--KCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSE 730 (765)
Q Consensus 664 ~~e~~d~p~~~~~dp~~~~~~gn~~s~~--~~R~~~~w~~~~~~~~~~l~~f~r~Li~lRk~~~~L~~~ 730 (765)
+++. |++++|. ..+++++|.... .++.|++|+|+||+|||+||+|+.+
T Consensus 526 ~t~~-----------------G~~n~y~~~~~~~~~dW~~~~--~~~~l~~~~k~Li~lRk~~~~l~~~ 575 (688)
T TIGR02100 526 RTQQ-----------------GNNNAYCQDNEIGWVDWSLDE--GDDELLAFTKKLIALRKAHPVLRRE 575 (688)
T ss_pred cCCC-----------------CCCCCccCCCcccccCccccc--ccHHHHHHHHHHHHHHHhCchhccc
Confidence 9873 7777774 356789997543 6789999999999999999988543
No 15
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=2.9e-67 Score=612.69 Aligned_cols=474 Identities=22% Similarity=0.321 Sum_probs=327.8
Q ss_pred cccCCcEEeCCcEEEEEecCCcCeEEEEeecCCC-CCCccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeCCC--
Q 004253 193 YEKFGFIRSDTGITYREWAPGAKSASLIGDFNNW-NPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS-- 269 (765)
Q Consensus 193 y~~lG~~~~~~gv~FrvWAP~A~~V~L~gdFN~w-~~~~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~~-- 269 (765)
..+||++++++||+|+||||+|++|+|++ |+++ ....++|++.++|||+++||+..+ |..|+|+++++.
T Consensus 9 ~~pLGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~-------G~~Y~yrv~g~~~p 80 (658)
T PRK03705 9 PTPLGAHYDGQGVNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGARP-------GLRYGYRVHGPWQP 80 (658)
T ss_pred CCCcceEEeCCCEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCCC-------CCEEEEEEccccCc
Confidence 34799999999999999999999999998 6654 334578988889999999998654 778999998642
Q ss_pred --C-----ccccCCccceeeccCCCC------------------CCCCcEEeCCCccccccccCCCC-CC-CCCceEEEe
Q 004253 270 --G-----IKDSIPAWIKFSVQAPGE------------------IPYNGIYYDPPEEEKYVFQHPQP-KK-PKSLRIYEA 322 (765)
Q Consensus 270 --~-----~~~~~~~~~~~~~~~~~~------------------~~~~~~~~dp~~~~~~~~~~~~~-~~-~~~~vIYE~ 322 (765)
| ....++||++........ ...+++++++ .|.|++..+ .. .+++||||+
T Consensus 81 ~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~W~~~~~p~~~~~~~vIYE~ 156 (658)
T PRK03705 81 AQGHRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVDD----HYDWEDDAPPRTPWGSTVIYEA 156 (658)
T ss_pred ccCcccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEecC----CCCCCCCCCCCCCccccEEEEE
Confidence 2 234589999876532100 0124555553 488986543 32 378999999
Q ss_pred ecCCCCC-CC-----CCCCHHhhHh-hhhhHHHHcCCCEEEECCcccCCC---------CCCCCCccccccCCCCCCCCH
Q 004253 323 HVGMSST-EP-----IINTYANFRD-DVLPRIKRLGYNAVQIMAVQEHSY---------YASFGYHVTNFFAPSSRCGTP 386 (765)
Q Consensus 323 hv~~~s~-~~-----~~Gt~~~~~~-~~L~yLk~LGvt~I~L~Pi~e~~~---------~~~~GY~~~~~~a~~~~~Gt~ 386 (765)
|||+|+. .+ ..|||+++++ .+|||||+||||+||||||+++.. .++|||+|.+||+|+++|||.
T Consensus 157 hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~ 236 (658)
T PRK03705 157 HVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASG 236 (658)
T ss_pred ehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCC
Confidence 9999985 22 3599999995 369999999999999999999854 257999999999999999994
Q ss_pred -----HHHHHHHHHHhhcCCEEEEeeccccccCCCcccC-cCCCCCCC-CCcccCCCCCcccC--CCCCCCCCCHHHHHH
Q 004253 387 -----DDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-NMFDGTDG-HYFHSGSRGYHWMW--DSRLFNYGSWEVLRF 457 (765)
Q Consensus 387 -----~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~-~~f~g~~~-~yf~~~~~g~~~~w--~~~~ln~~~~~v~~~ 457 (765)
+|||+||++||++||+||||||+||++.....+. ..+.+.++ .||.....+....| +.++||+++|+|+++
T Consensus 237 ~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~ 316 (658)
T PRK03705 237 PETALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDW 316 (658)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHH
Confidence 7999999999999999999999999987432221 12444443 45544433332223 347899999999999
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeeccCCC
Q 004253 458 LLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGM 537 (765)
Q Consensus 458 i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~~~ 537 (765)
|+++++||++||||||||||++.+|... ..|. .+ ..+++.+.. ..+.|++++|||.|...
T Consensus 317 iid~l~~W~~e~gVDGFRfD~a~~l~~~-----~~~~----------~~---~~~~~ai~~--d~vl~~~~ligE~Wd~~ 376 (658)
T PRK03705 317 AIDCLRYWVETCHVDGFRFDLATVLGRT-----PEFR----------QD---APLFTAIQN--DPVLSQVKLIAEPWDIG 376 (658)
T ss_pred HHHHHHHHHHHhCCCEEEEEcHhhhCcC-----cccc----------hh---hHHHHHHhh--CccccceEEEEecccCC
Confidence 9999999999999999999999988432 1111 00 123333332 23568999999999654
Q ss_pred CccccccccCC----c-ccchhhhHHHHHHHHHHHhhhhhhhhhhhhHhhhc--------cccccccceecccCcccccc
Q 004253 538 PTFCIPVQDGG----V-GFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMT--------NRRWLEKCVAYAESHDQALV 604 (765)
Q Consensus 538 p~~~~~~~~gg----~-gfD~~l~~~~~d~~~~~lk~~~~~~~~~~~~~~l~--------~~~~~~~~v~f~enHD~~r~ 604 (765)
+.. +..+. . .|+.++ .+.++.++.+... ....+...+. ..+.+.++|||+++||+.++
T Consensus 377 ~~~---~~~g~~~~~~~~~Nd~f----Rd~ir~f~~~~~~--~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~~HD~~TL 447 (658)
T PRK03705 377 PGG---YQVGNFPPPFAEWNDHF----RDAARRFWLHGDL--PLGEFAGRFAASSDVFKRNGRLPSASINLVTAHDGFTL 447 (658)
T ss_pred CCh---hhhcCCCcceEEEchHH----HHHHHHHHccCCC--cHHHHHHHHhcchhhccccCCCCCeEEEEEEeCCCccH
Confidence 321 11111 1 234333 3333343332110 0111111111 12345789999999999877
Q ss_pred Cccchhhhc---cChh---------hHhhhh--cCCCCCccchhhHHHHHHHHHHHHhcCCcceeecccccccCCCCCCC
Q 004253 605 GDKTIAFWL---MDKD---------MYDFMA--LDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDF 670 (765)
Q Consensus 605 g~kt~~~~~---~~~~---------~~~~~~--~~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G~~e~~d~ 670 (765)
.|+...... .+++ .-+... +.+....+.....++.|++.+++|+++|+|+| |||||||+++.
T Consensus 448 ~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i-~~GdE~grtq~--- 523 (658)
T PRK03705 448 RDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPML-LAGDEHGHSQH--- 523 (658)
T ss_pred HHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHH-HhhHHhccCCC---
Confidence 664211000 0000 000011 11111112344567788999999999999999 99999999873
Q ss_pred CCCCCCCCCCCcCCCCCCCCc--CCccccCCCCccccccccHHHHHHHHHHHHHHcCCCCC
Q 004253 671 PRGDQRLPNGQFVPGNNFSYD--KCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTS 729 (765)
Q Consensus 671 p~~~~~dp~~~~~~gn~~s~~--~~R~~~~w~~~~~~~~~~l~~f~r~Li~lRk~~~~L~~ 729 (765)
||+++|. ...+.++|... .+.|++|+|+||+|||+||+|+.
T Consensus 524 --------------G~nN~y~~~~~i~~~dW~~~----~~~l~~f~k~Li~lRk~~~~l~~ 566 (658)
T PRK03705 524 --------------GNNNAYCQDNALTWLDWSQA----DRGLTAFTAALIHLRQRIPALTQ 566 (658)
T ss_pred --------------CCCCCccCCCCccccccchh----hhHHHHHHHHHHHHHHhChhhcc
Confidence 7788874 35678999742 46899999999999999999854
No 16
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=1.4e-66 Score=626.83 Aligned_cols=500 Identities=20% Similarity=0.309 Sum_probs=344.5
Q ss_pred HHHHHHHhccCchhhhhcccccCCcEEeCCc-EEEEEecCCcCeEEEEe-ecCCCCC--CccCCccCCCceEEEEeCCCC
Q 004253 174 QMCEDIDKYEGGLAAFSRGYEKFGFIRSDTG-ITYREWAPGAKSASLIG-DFNNWNP--NADIMTQNEFGVWEIFLPNNA 249 (765)
Q Consensus 174 ~~~~~i~~~~g~l~~fa~gy~~lG~~~~~~g-v~FrvWAP~A~~V~L~g-dFN~w~~--~~~~m~~~~~GvW~i~lp~~~ 249 (765)
+.+++++.|+| +||+++.++| ++|+||||+|++|+|++ ++++++. ..++|.+.+.|||+++|++..
T Consensus 307 ~~~d~~y~y~g----------~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~ 376 (1111)
T TIGR02102 307 RLKDEMYAYDG----------KLGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKEN 376 (1111)
T ss_pred hhhhhhhccCC----------CCCCEEecCCCEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcc
Confidence 35566666665 6999998777 79999999999999997 4455543 357999999999999999754
Q ss_pred CCCCCCCCCCEEEEEeeCCCCccccCCccceeeccCCC------CCCCCcEEeCCCcc--ccccccCCC-CCCCCCceEE
Q 004253 250 DGSPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPG------EIPYNGIYYDPPEE--EKYVFQHPQ-PKKPKSLRIY 320 (765)
Q Consensus 250 ~G~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~dp~~~--~~~~~~~~~-~~~~~~~vIY 320 (765)
.|.. -.+|..|+|++.........++||++......+ ....+++++|++.. +.|.|.+.. ...+++++||
T Consensus 377 ~G~~-d~~G~~Y~Y~V~~~~~~~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~~~~~~~~~~~~~~~d~vIY 455 (1111)
T TIGR02102 377 TGID-SLTGYYYHYEITRGGDKVLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQELDFAKIENFKKREDAIIY 455 (1111)
T ss_pred cCcc-cCCCceEEEEEECCCceEEEeChhheEEeccCcccccccCCCCceEEEcCcccCccccccccccccCCccceEEE
Confidence 4432 126889999998766566778999986543111 01236788888543 346676532 3456899999
Q ss_pred EeecCCCCCCC--------CCCCHHhhHhhhhhHHHHcCCCEEEECCcccCC------------------CCCCCCCccc
Q 004253 321 EAHVGMSSTEP--------IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHS------------------YYASFGYHVT 374 (765)
Q Consensus 321 E~hv~~~s~~~--------~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~------------------~~~~~GY~~~ 374 (765)
|+|||+|+.++ ..|+|++|+ ++|+|||+|||||||||||+++. ...+|||+|.
T Consensus 456 ElHVrdFt~d~~~~~~~~~~~Gtf~gl~-ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~ 534 (1111)
T TIGR02102 456 EAHVRDFTSDPAIAGDLTAQFGTFAAFV-EKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQ 534 (1111)
T ss_pred EEechhhCcCCCCCcccccCCcCHHHHH-HhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcC
Confidence 99999998543 369999999 69999999999999999999742 1135999999
Q ss_pred cccCCCCCCCC--------HHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccC-CCCC-cccCCC
Q 004253 375 NFFAPSSRCGT--------PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSG-SRGY-HWMWDS 444 (765)
Q Consensus 375 ~~~a~~~~~Gt--------~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~-~~g~-~~~w~~ 444 (765)
+||+|+++||+ ++|||+||++||++||+||||||+||++..+ .|++..+.||+.. ..|. ...|+.
T Consensus 535 ~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~-----~f~~~~p~Yy~~~~~~G~~~~~~~g 609 (1111)
T TIGR02102 535 NYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVY-----IFEDLEPNYYHFMDADGTPRTSFGG 609 (1111)
T ss_pred cCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEecccccccccc-----cccccCCCceEeeCCCCCcccccCC
Confidence 99999999998 5899999999999999999999999998754 5777777777532 2222 234566
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcC
Q 004253 445 RLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLY 524 (765)
Q Consensus 445 ~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~ 524 (765)
..+|..+++||++|+++++||++||||||||||++.++ ...+++.+...+++++
T Consensus 610 ~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~--------------------------d~~~~~~~~~~l~~~d 663 (1111)
T TIGR02102 610 GRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDH--------------------------DAASIEIAYKEAKAIN 663 (1111)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccC--------------------------CHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999999998643 1246788888889999
Q ss_pred CCceEEeeccCCCCcc----ccccccCCcccchhhhHHHHHHHHHHHhhhh-----------hhhhhhhhHhhhccc---
Q 004253 525 PEAVSIGEDVSGMPTF----CIPVQDGGVGFDYRLQMAIADKWIELLKKRD-----------EDWKMGAIVHTMTNR--- 586 (765)
Q Consensus 525 p~~i~iaE~~~~~p~~----~~~~~~gg~gfD~~l~~~~~d~~~~~lk~~~-----------~~~~~~~~~~~l~~~--- 586 (765)
|++++|||.|...... +.+.....+.++.. ...+.+.+++.+++.. ....+..+...+.+.
T Consensus 664 P~~~liGE~W~~~~g~~~~~~~~~~~~~~~~~~~-ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~ 742 (1111)
T TIGR02102 664 PNIIMIGEGWRTYAGDEGDPVQAADQDWMKYTET-VGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHN 742 (1111)
T ss_pred cCEEEEEecccccCCCCcccccccchhhHhcCCc-ccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCccc
Confidence 9999999999742110 10000011110000 0111222333333210 011122233333321
Q ss_pred ---cccccceecccCccccccCccchhhhccChhhHhhhhcCCCCCc-cchhhHHHHHHHHHHHHhcCCcceeecccccc
Q 004253 587 ---RWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTP-RIDRGIALHKMIRLVTMGLGGEAYLNFMGNEF 662 (765)
Q Consensus 587 ---~~~~~~v~f~enHD~~r~g~kt~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~ 662 (765)
.-+.++|+|++|||+.++.|+-......+. ... ......++.|++.+++|+.+|+|+| ++|+||
T Consensus 743 ~~~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~-----------~~~e~~~~~~~r~rla~~llllSQGiPfi-~aGqEf 810 (1111)
T TIGR02102 743 FEADSPGDVVQYIAAHDNLTLHDVIAQSIKKDP-----------KVAENQEEIHRRIRLGNLMVLTSQGTAFI-HSGQEY 810 (1111)
T ss_pred cccCCcccEEEEEecCCCCchHhhhhhccccCc-----------ccccchHHHHHHHHHHHHHHHHhCcHhhh-hcchhh
Confidence 245689999999999998765211000000 000 0112346778888999999999999 999999
Q ss_pred cCCCCCCCCC-C----CCCCCC---------CC--cC-CCCCCCCc--CCccccCCCCccc----cccccHHHHHHHHHH
Q 004253 663 GHPEWIDFPR-G----DQRLPN---------GQ--FV-PGNNFSYD--KCRRRFDLGDADY----LRYRGMQEFDRAMQH 719 (765)
Q Consensus 663 G~~e~~d~p~-~----~~~dp~---------~~--~~-~gn~~s~~--~~R~~~~w~~~~~----~~~~~l~~f~r~Li~ 719 (765)
|+++..+-+. . +...|. +. .+ ....+||+ ...++++|..... +.++.+++|+|.||+
T Consensus 811 ~RTK~gnnn~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~ 890 (1111)
T TIGR02102 811 GRTKQFRNPDYRTPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIE 890 (1111)
T ss_pred hcccCCCcccccccccccccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHH
Confidence 9976433110 0 000111 00 00 12266773 4678899976532 223689999999999
Q ss_pred HHHHcCCCCC
Q 004253 720 LEEKYGFMTS 729 (765)
Q Consensus 720 lRk~~~~L~~ 729 (765)
|||.+|+|+.
T Consensus 891 lRk~~~~fr~ 900 (1111)
T TIGR02102 891 LRRSTDAFRL 900 (1111)
T ss_pred HHhcCccccc
Confidence 9999999843
No 17
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=5.9e-64 Score=594.07 Aligned_cols=465 Identities=17% Similarity=0.226 Sum_probs=324.6
Q ss_pred cCCcEEeCCcEEEEEecCCcCeEEEEeecCCCC-CCccCCccC-CCceEEEEeCCCCCCCCCCCCCCEEEEEeeCC---C
Q 004253 195 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWN-PNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP---S 269 (765)
Q Consensus 195 ~lG~~~~~~gv~FrvWAP~A~~V~L~gdFN~w~-~~~~~m~~~-~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~---~ 269 (765)
+||+++.++|++|+||||+|++|.|+++.++++ ...++|+++ +.|||++++|+..+ |..|+|+++.. .
T Consensus 127 ~LGa~~~~~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~-------G~~Y~Y~V~v~~p~~ 199 (898)
T TIGR02103 127 SLGATLTDSGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWK-------GAYYRYEVTVYHPST 199 (898)
T ss_pred CCCcEEeCCcEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCC-------CCEeEEEEEEecCCC
Confidence 499999999999999999999999998666653 456789987 68999999998765 56788888632 1
Q ss_pred C---ccccCCccceeeccCCCCCCCCcEEeCCCc--cccccccCCC---CC--CCCCceEEEeecCCCCCC------CCC
Q 004253 270 G---IKDSIPAWIKFSVQAPGEIPYNGIYYDPPE--EEKYVFQHPQ---PK--KPKSLRIYEAHVGMSSTE------PII 333 (765)
Q Consensus 270 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~--~~~~~~~~~~---~~--~~~~~vIYE~hv~~~s~~------~~~ 333 (765)
+ .....+||++... .++. .++++|+.. +.+..|...+ |. .+++++|||+|||+||.. ...
T Consensus 200 G~v~~~~v~DPYA~als-~n~~---~S~VvDl~~~~~~p~~W~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~s~~~~~r 275 (898)
T TIGR02103 200 GKVETYLVTDPYSVSLS-ANSE---YSQVVDLNDPALKPEGWDALAMPKPQLASFADMVLYELHIRDFSANDESVPAELR 275 (898)
T ss_pred CeECCeEEeCcCcceEc-CCCC---CeEEeCCccccCCCcchhhcccccCCcCCCcccEEEEEeccccccCCCCCCcCcC
Confidence 3 2356889988654 3333 588888753 3456776432 32 468999999999999842 246
Q ss_pred CCHHhhHhh------hhhHHHHcCCCEEEECCcccCCC------------------------------------------
Q 004253 334 NTYANFRDD------VLPRIKRLGYNAVQIMAVQEHSY------------------------------------------ 365 (765)
Q Consensus 334 Gt~~~~~~~------~L~yLk~LGvt~I~L~Pi~e~~~------------------------------------------ 365 (765)
|+|.+++++ .|++|++||||||+||||+++..
T Consensus 276 GtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 355 (898)
T TIGR02103 276 GKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSKLCELNPDSKSSEFAGYCDSGSQLKQ 355 (898)
T ss_pred ceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhhhhccccccccccccccccccccccc
Confidence 999999953 36666678999999999998731
Q ss_pred --------------------CCCCCCccccccCCCCCCCC-------HHHHHHHHHHHhhcCCEEEEeeccccccCCCcc
Q 004253 366 --------------------YASFGYHVTNFFAPSSRCGT-------PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLD 418 (765)
Q Consensus 366 --------------------~~~~GY~~~~~~a~~~~~Gt-------~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~ 418 (765)
..+|||+|.+||+|+++|++ +.|||+||++||++||+||||||+||++..+..
T Consensus 356 ~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~ 435 (898)
T TIGR02103 356 NDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFREMVQALNKTGLNVVMDVVYNHTNASGPN 435 (898)
T ss_pred cccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHHHHHHHHHCCCEEEEEeecccccccCcc
Confidence 13799999999999999998 479999999999999999999999999987644
Q ss_pred cCcCCCCCCCCCcccCC-CCCc-ccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCC
Q 004253 419 GLNMFDGTDGHYFHSGS-RGYH-WMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGN 496 (765)
Q Consensus 419 ~~~~f~g~~~~yf~~~~-~g~~-~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~ 496 (765)
....++...+.||+... .|.. ...+..+++.++++|+++|+++++||++||||||||||++.++
T Consensus 436 ~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~-------------- 501 (898)
T TIGR02103 436 DRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMGHH-------------- 501 (898)
T ss_pred CcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechhhC--------------
Confidence 44557777777776432 2321 1123356789999999999999999999999999999999877
Q ss_pred CCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeeccCCCCccc-ccccc--------CCcc-cchhhhHHHHH-----
Q 004253 497 YSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFC-IPVQD--------GGVG-FDYRLQMAIAD----- 561 (765)
Q Consensus 497 ~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~~~p~~~-~~~~~--------gg~g-fD~~l~~~~~d----- 561 (765)
..+||+++++.+++++|+++++||.|....... ..... .++| |+-+++-++..
T Consensus 502 ------------~~~f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~~~ig~FnD~~RDavrGg~~f~ 569 (898)
T TIGR02103 502 ------------PKAQMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQLNLAGTGIGTFSDRLRDAVRGGGPFD 569 (898)
T ss_pred ------------CHHHHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhccccCCCCeEEeccchhhHhcCCCccc
Confidence 235899999999999999999999996321111 01110 1111 22222222210
Q ss_pred --------------------------------------HHHHHHhhhhhhhhhhhhH------hhhc------c-ccccc
Q 004253 562 --------------------------------------KWIELLKKRDEDWKMGAIV------HTMT------N-RRWLE 590 (765)
Q Consensus 562 --------------------------------------~~~~~lk~~~~~~~~~~~~------~~l~------~-~~~~~ 590 (765)
..+..+.+...++...... ..+. + ...+.
T Consensus 570 ~~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y~g~~~~ya~~P~ 649 (898)
T TIGR02103 570 SGDALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFVLTDHEGKVVTGEELDYNGAPAGYAADPT 649 (898)
T ss_pred cccccccCcceecCcccCCcccccccchhhhhhhhhHHHHHHhhcCccccccccccccccccccccccCcCccccccCHH
Confidence 0000010000000000000 0000 0 02346
Q ss_pred cceecccCccccccCccchhhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhcCCcceeecccccccCCCCCCC
Q 004253 591 KCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDF 670 (765)
Q Consensus 591 ~~v~f~enHD~~r~g~kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G~~e~~d~ 670 (765)
++|+|+++||+.++.|+-.. .+ +.....+...++++++.+++++.+|+|+| .+|+||...+.
T Consensus 650 e~inYvs~HDN~TL~D~l~~--~~------------~~~~~~~~r~r~~~la~a~~~lsQGipF~-haG~E~lRSK~--- 711 (898)
T TIGR02103 650 ETINYVSKHDNQTLWDAISY--KA------------AAETPSAERVRMQAVSLSTVMLGQGIPFF-HAGSELLRSKS--- 711 (898)
T ss_pred HheeeeeccCCccHHHHHHh--hC------------CCCCCHHHHHHHHHHHHHHHHHhChhhHH-hcchHhhcCCC---
Confidence 88999999999999876321 01 11112344578889999999999999999 99999999874
Q ss_pred CCCCCCCCCCCcCCCCCCCCcC--CccccCCCCccc--------------------------------cccccHHHHHHH
Q 004253 671 PRGDQRLPNGQFVPGNNFSYDK--CRRRFDLGDADY--------------------------------LRYRGMQEFDRA 716 (765)
Q Consensus 671 p~~~~~dp~~~~~~gn~~s~~~--~R~~~~w~~~~~--------------------------------~~~~~l~~f~r~ 716 (765)
+..+||+. .-++++|....+ ..+..+.+|+++
T Consensus 712 --------------~~~nSY~sgD~~N~vdw~~~~~~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 777 (898)
T TIGR02103 712 --------------FDRDSYDSGDWFNRVDFSGQDNNWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLE 777 (898)
T ss_pred --------------CCCCCCcCchhhheecccccccccccCCCcccccccchhhhcccccccccccchhhHHHHHHHHHH
Confidence 23334432 223344432211 124678999999
Q ss_pred HHHHHHHcCCCC
Q 004253 717 MQHLEEKYGFMT 728 (765)
Q Consensus 717 Li~lRk~~~~L~ 728 (765)
||+||+.+|+|+
T Consensus 778 Li~lRks~p~Fr 789 (898)
T TIGR02103 778 LLRIRSSSPLFR 789 (898)
T ss_pred HHHHHhCCcccC
Confidence 999999999884
No 18
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=1.3e-61 Score=572.06 Aligned_cols=463 Identities=17% Similarity=0.225 Sum_probs=311.4
Q ss_pred cCCcEEeCCcEEEEEecCCcCeEEEEeecCCCCC----CccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeCCC-
Q 004253 195 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWNP----NADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS- 269 (765)
Q Consensus 195 ~lG~~~~~~gv~FrvWAP~A~~V~L~gdFN~w~~----~~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~~- 269 (765)
+||+++.++|++|+||||+|++|.|++ |++++. ..++|. .++|||++++++..+ |..|+|+++...
T Consensus 214 ~LGA~~~~~g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-~~~GVWsv~v~~~~~-------G~~Y~Y~V~v~~p 284 (970)
T PLN02877 214 PLGAHFSKDAVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-ESNGVWSVEGPKSWE-------GCYYVYEVSVYHP 284 (970)
T ss_pred CCcceEecCCEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-CCCCEEEEEeccCCC-------CCeeEEEEeeccc
Confidence 799999999999999999999999997 565532 235786 678999999998765 567888886321
Q ss_pred --C---ccccCCccceeeccCCCCCCCCcEEeCCCc--cccccccC---CCC--CCCCCceEEEeecCCCCCCC------
Q 004253 270 --G---IKDSIPAWIKFSVQAPGEIPYNGIYYDPPE--EEKYVFQH---PQP--KKPKSLRIYEAHVGMSSTEP------ 331 (765)
Q Consensus 270 --~---~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~--~~~~~~~~---~~~--~~~~~~vIYE~hv~~~s~~~------ 331 (765)
+ .....+||++....+ +. .+++.|+.. +.+..|.. ++| ..+++++|||+|||+||..+
T Consensus 285 ~~g~~~~~~v~DPYA~als~n-g~---~S~vvDl~~~~~~p~gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~~ 360 (970)
T PLN02877 285 STGKVETCYANDPYARGLSAD-GR---RTLLVDLDSDDLKPEGWDNLAKEKPCLLSFSDISIYELHVRDFSANDETVHPD 360 (970)
T ss_pred CCCcccccccCCccceEEecC-CC---ceEEECCccccCCChhhhhcccccCccCCCcccEEEEEeccccccCCCCCCcC
Confidence 2 234678998765432 32 467777642 24556764 233 34689999999999998642
Q ss_pred CCCCHHhhHhh------hhhHHHHcCCCEEEECCcccCCC-------------------------------------CCC
Q 004253 332 IINTYANFRDD------VLPRIKRLGYNAVQIMAVQEHSY-------------------------------------YAS 368 (765)
Q Consensus 332 ~~Gt~~~~~~~------~L~yLk~LGvt~I~L~Pi~e~~~-------------------------------------~~~ 368 (765)
..|+|.+|+++ .|+|||+||||||||||+++++. ..+
T Consensus 361 ~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yN 440 (970)
T PLN02877 361 FRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYN 440 (970)
T ss_pred CCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCC
Confidence 35999999953 35666666999999999999742 267
Q ss_pred CCCccccccCCCCCCCC-------HHHHHHHHHHHhhcCCEEEEeeccccccCCCccc-CcCCCCCCCCCccc-CCCCCc
Q 004253 369 FGYHVTNFFAPSSRCGT-------PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDG-LNMFDGTDGHYFHS-GSRGYH 439 (765)
Q Consensus 369 ~GY~~~~~~a~~~~~Gt-------~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~-~~~f~g~~~~yf~~-~~~g~~ 439 (765)
|||+|.+||+|+++|+| +.|||+||++||++||+||||||+||++..+..+ .+.++...+.||+. +..|..
T Consensus 441 WGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~ 520 (970)
T PLN02877 441 WGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFI 520 (970)
T ss_pred CCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCc
Confidence 99999999999999998 4689999999999999999999999998765433 35677777766653 333321
Q ss_pred cc-CCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHH
Q 004253 440 WM-WDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVND 518 (765)
Q Consensus 440 ~~-w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~ 518 (765)
.. -+....+.++++||++|+|+++||++||||||||||++.++... .+..+.+
T Consensus 521 ~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~--------------------------tm~~~~~ 574 (970)
T PLN02877 521 ENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKR--------------------------TMVRAKD 574 (970)
T ss_pred ccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHH--------------------------HHHHHHH
Confidence 11 12345577899999999999999999999999999999887321 3344444
Q ss_pred HHhhc-------C-CCceEEeeccCCCCc--ccc---cccc----CCcc-cchhhhHHHH--------------------
Q 004253 519 MIHGL-------Y-PEAVSIGEDVSGMPT--FCI---PVQD----GGVG-FDYRLQMAIA-------------------- 560 (765)
Q Consensus 519 ~v~~~-------~-p~~i~iaE~~~~~p~--~~~---~~~~----gg~g-fD~~l~~~~~-------------------- 560 (765)
.++++ . |+++++||.|..... ..+ ..+. .++| |+-+++-++.
T Consensus 575 ~L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkGg~~F~~~~~qGf~~G~~~~ 654 (970)
T PLN02877 575 ALQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGTGIGSFNDRIRDAMLGGSPFGHPLQQGFVTGLFLQ 654 (970)
T ss_pred HHHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccCCCceEEecchhHHHHcCCCCCCCcCCCceecccccC
Confidence 44444 3 789999999963210 000 0000 0111 2222221111
Q ss_pred --------------------HHHHHHHhhhhhhhh---------hhh-h-Hhhh--ccc-cccccceecccCccccccCc
Q 004253 561 --------------------DKWIELLKKRDEDWK---------MGA-I-VHTM--TNR-RWLEKCVAYAESHDQALVGD 606 (765)
Q Consensus 561 --------------------d~~~~~lk~~~~~~~---------~~~-~-~~~l--~~~-~~~~~~v~f~enHD~~r~g~ 606 (765)
+.....+.+...++. .+. + ...- .+. ..+.++|||+++||+.++.|
T Consensus 655 pn~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InYvs~HDN~TL~D 734 (970)
T PLN02877 655 PNGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINYVSAHDNETLFD 734 (970)
T ss_pred CcccccccchhhhhhhhhhHHHHHHHhccchhccccccccccccccccccccCCcccccccCHHHheeeeeccCCchHHH
Confidence 000001111000000 000 0 0000 000 13568899999999999988
Q ss_pred cchhhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhcCCcceeecccccccCCCCCCCCCCCCCCCCCCcCCCC
Q 004253 607 KTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGN 686 (765)
Q Consensus 607 kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G~~e~~d~p~~~~~dp~~~~~~gn 686 (765)
+-.. .+ +.....+...++++++.+++++.+|+|+| .+|+||...+. +.
T Consensus 735 ~l~~--~~------------~~~~s~~~r~r~~~la~aiv~lsQGipF~-haG~E~lRSK~-----------------~d 782 (970)
T PLN02877 735 IISL--KT------------PMEISVDERCRINHLATSIIALSQGIPFF-HAGDEILRSKS-----------------LD 782 (970)
T ss_pred HHHh--hc------------CCCCCHHHHHHHHHHHHHHHHHhChhhHH-hcchhhhcCCC-----------------CC
Confidence 6321 01 11112345678889999999999999999 99999999884 34
Q ss_pred CCCCcC--CccccCCCCcc---------cccc-----------------------ccHHHHHHHHHHHHHHcCCCC
Q 004253 687 NFSYDK--CRRRFDLGDAD---------YLRY-----------------------RGMQEFDRAMQHLEEKYGFMT 728 (765)
Q Consensus 687 ~~s~~~--~R~~~~w~~~~---------~~~~-----------------------~~l~~f~r~Li~lRk~~~~L~ 728 (765)
.+||+. .-++++|.... ..++ ....+++|.||+|||.+|+|+
T Consensus 783 ~nSYnSgD~~N~lDw~~~~nn~~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~plFr 858 (970)
T PLN02877 783 RDSYNSGDWFNRLDFSYDSNNWGVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSSPLFR 858 (970)
T ss_pred CCCCcCchhhheeccccccCccccCCChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcCcccC
Confidence 445543 23455554311 1122 355889999999999999884
No 19
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=4.4e-61 Score=592.20 Aligned_cols=475 Identities=18% Similarity=0.275 Sum_probs=329.5
Q ss_pred ccCCcEEeCCcEEEEEecCCcCeEEEEeecCCCCCC---ccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeCCCC
Q 004253 194 EKFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPN---ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 270 (765)
Q Consensus 194 ~~lG~~~~~~gv~FrvWAP~A~~V~L~gdFN~w~~~---~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~~~ 270 (765)
.+||+++.++||+|+||||+|++|.|+. |+.|... .++|....+|||+++|++... |..|+|+++++.+
T Consensus 14 ~plGA~~~~~gv~F~v~ap~A~~V~L~l-f~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~-------g~~Ygyrv~g~~~ 85 (1221)
T PRK14510 14 EPLGAVPDGGGVNLALFSGAAERVEFCL-FDLWGVREEARIKLPGRTGDVWHGFIVGVGP-------GARYGNRQEGPGG 85 (1221)
T ss_pred CCCceEEECCeEEEEEECCCCCEEEEEE-EECCCCCeeEEEECCCCcCCEEEEEEccCCC-------CcEEEEEeccCCC
Confidence 4799999999999999999999999996 7877543 367877789999999998655 6689999987543
Q ss_pred c---------cccCCccceeeccCCC--CCC------------CCcEEeCCCc--cccccccCCCC-CCC-CCceEEEee
Q 004253 271 I---------KDSIPAWIKFSVQAPG--EIP------------YNGIYYDPPE--EEKYVFQHPQP-KKP-KSLRIYEAH 323 (765)
Q Consensus 271 ~---------~~~~~~~~~~~~~~~~--~~~------------~~~~~~dp~~--~~~~~~~~~~~-~~~-~~~vIYE~h 323 (765)
. ...++||++....... ... ..+.+.+|.. ...|.|...++ ..+ .+++|||+|
T Consensus 86 p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~~~~~~~~~d~vIYE~h 165 (1221)
T PRK14510 86 PGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPRSPLHGDWDDSPLYEMN 165 (1221)
T ss_pred cccccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeecccccCCCCCCCCCcccCeEEEEc
Confidence 2 2356788765432110 000 0112222210 12478875543 333 689999999
Q ss_pred cCCCCCC------CCCCCHHhhHh-hhhhHHHHcCCCEEEECCcccCCC---------CCCCCCccccccCCCCCCC--C
Q 004253 324 VGMSSTE------PIINTYANFRD-DVLPRIKRLGYNAVQIMAVQEHSY---------YASFGYHVTNFFAPSSRCG--T 385 (765)
Q Consensus 324 v~~~s~~------~~~Gt~~~~~~-~~L~yLk~LGvt~I~L~Pi~e~~~---------~~~~GY~~~~~~a~~~~~G--t 385 (765)
|+.|+.. +..|+|+++.+ ++|+|||+||||+||||||+++.. .++|||++.|||+|+++|| +
T Consensus 166 vr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~ 245 (1221)
T PRK14510 166 VRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGG 245 (1221)
T ss_pred cchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCc
Confidence 9999752 23588888872 479999999999999999998753 3569999999999999999 9
Q ss_pred HHHHHHHHHHHhhcCCEEEEeeccccccCCCcccC-cCCCCCC-CCCcccCC---CCCcccCCC-CCCCCCCHHHHHHHH
Q 004253 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-NMFDGTD-GHYFHSGS---RGYHWMWDS-RLFNYGSWEVLRFLL 459 (765)
Q Consensus 386 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~-~~f~g~~-~~yf~~~~---~g~~~~w~~-~~ln~~~~~v~~~i~ 459 (765)
.+|||+||++||++||+||||||+||++.++..+. ..+.+.+ ..||+... ..+...|+. ..+|+++++|+++|+
T Consensus 246 ~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~ 325 (1221)
T PRK14510 246 EEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPM 325 (1221)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHH
Confidence 99999999999999999999999999998754331 1233332 34555331 223334443 578999999999999
Q ss_pred HHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceE-----Eeecc
Q 004253 460 SNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVS-----IGEDV 534 (765)
Q Consensus 460 ~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~-----iaE~~ 534 (765)
++++||++ |||||||||++..|... ...||+.+...++++.|+.++ |||.|
T Consensus 326 d~lr~Wv~-~gVDGfRfDla~~l~r~-----------------------~~~f~~~~~~~l~ai~~d~~l~~~~ligE~W 381 (1221)
T PRK14510 326 DVLRSWAK-RGVDGFRLDLADELARE-----------------------PDGFIDEFRQFLKAMDQDPVLRRLKMIAEVW 381 (1221)
T ss_pred HHHHHHHH-hCCCEEEEechhhhccC-----------------------ccchHHHHHHHHHHhCCCcCcccCcEEEecc
Confidence 99999999 99999999999887321 124888999999999998887 99999
Q ss_pred CCCCccccccccCCc-----ccchhhhHHHHHHHHHHHhhhhhhhhhhhhHhhhc--------cccccccceecccCccc
Q 004253 535 SGMPTFCIPVQDGGV-----GFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMT--------NRRWLEKCVAYAESHDQ 601 (765)
Q Consensus 535 ~~~p~~~~~~~~gg~-----gfD~~l~~~~~d~~~~~lk~~~~~~~~~~~~~~l~--------~~~~~~~~v~f~enHD~ 601 (765)
...+.. ++.+.. .+++++ .+.++.++++... ....+...+. ..+.+..+|||++|||+
T Consensus 382 d~~~~~---~~~g~f~~~~~~~N~~f----rd~vr~f~~g~~~--~~~~~a~~l~gs~d~~~~~~~~~~~~iNfi~~HD~ 452 (1221)
T PRK14510 382 DDGLGG---YQYGKFPQYWGEWNDPL----RDIMRRFWLGDIG--MAGELATRLAGSADIFPHRRRNFSRSINFITAHDG 452 (1221)
T ss_pred cCCCCc---cccCCCCcceeeeccHH----HHHHHHHhcCCCc--hHHHHHHHHhCcHhhcCccCCCcccceEEEeeCCc
Confidence 653221 121211 134443 4444444443211 0111111111 11233568999999999
Q ss_pred cccCccchhhhcc---Chh---------hHhhhh--cCCCCCccchhhHHHHHHHHHHHHhcCCcceeecccccccCCCC
Q 004253 602 ALVGDKTIAFWLM---DKD---------MYDFMA--LDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEW 667 (765)
Q Consensus 602 ~r~g~kt~~~~~~---~~~---------~~~~~~--~~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G~~e~ 667 (765)
.|+.+..-..... +.| ..+... +.+....+.....++.|++.+++|+++|+|+| |||||+|++..
T Consensus 453 ~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~I-y~GdE~g~tq~ 531 (1221)
T PRK14510 453 FTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPML-YYGDEAGRSQN 531 (1221)
T ss_pred hHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEE-ecchhcccccC
Confidence 9876532100000 000 000000 11111112234566778999999999999999 99999999873
Q ss_pred CCCCCCCCCCCCCCcCCCCCCCC--cCCccccCCCCccccccccHHHHHHHHHHHHHHcCCCCCCC
Q 004253 668 IDFPRGDQRLPNGQFVPGNNFSY--DKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEH 731 (765)
Q Consensus 668 ~d~p~~~~~dp~~~~~~gn~~s~--~~~R~~~~w~~~~~~~~~~l~~f~r~Li~lRk~~~~L~~~~ 731 (765)
||+++| +.+|+.++|... .+.|++|+|+||+|||++++|+.+.
T Consensus 532 -----------------Gn~n~y~~~~~r~~~~W~~~----~~~l~~f~k~Li~lRk~~~~L~~g~ 576 (1221)
T PRK14510 532 -----------------GNNNGYAQDNNRGTYPWGNE----DEELLSFFRRLIKLRREYGVLRQGE 576 (1221)
T ss_pred -----------------CCCCCCCCCCccccCCcccc----cHHHHHHHHHHHHHHHhChhhccCc
Confidence 777776 568999999753 3489999999999999999986554
No 20
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-56 Score=515.23 Aligned_cols=478 Identities=21% Similarity=0.318 Sum_probs=318.3
Q ss_pred cccCCcEE---eCCcEEEEEecCCcCeEEEEe-ecCCCCCC--ccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEee
Q 004253 193 YEKFGFIR---SDTGITYREWAPGAKSASLIG-DFNNWNPN--ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMD 266 (765)
Q Consensus 193 y~~lG~~~---~~~gv~FrvWAP~A~~V~L~g-dFN~w~~~--~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~ 266 (765)
..++|+++ ...|+.|.+|+.+|+.|.||. |...-... .+++....+.+|++.+|+..+ |+.|.|+++
T Consensus 17 ~~plga~~~~~~~~g~~f~l~s~~a~~v~l~l~d~~~~~~~~~~~~~~~~~G~iw~~~~p~~~~-------g~~y~yr~~ 89 (697)
T COG1523 17 PYPLGATVIDIDGDGVNFALFSSHAERVELCLFDEAGNTEEGRLYPYDGELGAIWHLWLPGAKP-------GQVYGYRVH 89 (697)
T ss_pred cccccceeeeccCcceEEeeeccccceEEEEecCcccccccccccccCCccccEEEEEcCCCce-------eeEEEEecC
Confidence 34899998 448999999999999999995 22221122 267777777799999998765 668899987
Q ss_pred CCCC---------ccccCCccceeeccCCC-----------------------C--CCCCcEEeCCCccccccccCCC-C
Q 004253 267 TPSG---------IKDSIPAWIKFSVQAPG-----------------------E--IPYNGIYYDPPEEEKYVFQHPQ-P 311 (765)
Q Consensus 267 ~~~~---------~~~~~~~~~~~~~~~~~-----------------------~--~~~~~~~~dp~~~~~~~~~~~~-~ 311 (765)
++.. .+.-++||++....... . ...++++.++. +.|+.++ |
T Consensus 90 g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~~~----~~w~~~~~~ 165 (697)
T COG1523 90 GPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVIDPL----FDWENDKPP 165 (697)
T ss_pred CCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEeccc----cccccCCCC
Confidence 6421 12335666653321110 0 01245666653 6787653 3
Q ss_pred CCC-CCceEEEeecCCCC-CCC-----CCCCHHhhHhhh--hhHHHHcCCCEEEECCcccCC---------CCCCCCCcc
Q 004253 312 KKP-KSLRIYEAHVGMSS-TEP-----IINTYANFRDDV--LPRIKRLGYNAVQIMAVQEHS---------YYASFGYHV 373 (765)
Q Consensus 312 ~~~-~~~vIYE~hv~~~s-~~~-----~~Gt~~~~~~~~--L~yLk~LGvt~I~L~Pi~e~~---------~~~~~GY~~ 373 (765)
..| +++||||+|||+|| .++ ..|||++++ +. |+|||+||||||+||||+++. ..++|||+|
T Consensus 166 ~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~-~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP 244 (697)
T COG1523 166 RIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLA-EPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDP 244 (697)
T ss_pred CCCccceEEEEeeecccccCCCCCchhhccceehhc-cccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCc
Confidence 444 88999999999998 433 459999999 46 999999999999999999863 346799999
Q ss_pred ccccCCCCCCCC-------HHHHHHHHHHHhhcCCEEEEeeccccccCCC-cccCcCCCCCCCCCcc-cCCCCCc--ccC
Q 004253 374 TNFFAPSSRCGT-------PDDLKSLIDKAHELGLLVLMDIVHSHASNNV-LDGLNMFDGTDGHYFH-SGSRGYH--WMW 442 (765)
Q Consensus 374 ~~~~a~~~~~Gt-------~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~-~~~~~~f~g~~~~yf~-~~~~g~~--~~w 442 (765)
.+||+|+++|.+ ..|||.||+++|++||+||||||||||+... ......|+|.++.||+ .++.|+. +..
T Consensus 245 ~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TG 324 (697)
T COG1523 245 LNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTG 324 (697)
T ss_pred ccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCc
Confidence 999999999976 4599999999999999999999999998643 2334578999887544 4444443 444
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhh
Q 004253 443 DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHG 522 (765)
Q Consensus 443 ~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~ 522 (765)
+.+.+|.++|+||++|+|+|+||++||||||||||+++.+.....+ |. ..+ .++..+. -..
T Consensus 325 cGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~----~~------------~~~-~l~~~~~--~~p 385 (697)
T COG1523 325 CGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETML----FD------------INA-NLFLAGE--GDP 385 (697)
T ss_pred cCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccc----cc------------cCc-chhhhcc--CCc
Confidence 5689999999999999999999999999999999999887543210 00 000 0111110 011
Q ss_pred cCCCceEEeeccCCCCccccccccCCcccc--hhh---hHHHHHHHHHHHhhhhhhhhhhhhHhhhcc--------cccc
Q 004253 523 LYPEAVSIGEDVSGMPTFCIPVQDGGVGFD--YRL---QMAIADKWIELLKKRDEDWKMGAIVHTMTN--------RRWL 589 (765)
Q Consensus 523 ~~p~~i~iaE~~~~~p~~~~~~~~gg~gfD--~~l---~~~~~d~~~~~lk~~~~~~~~~~~~~~l~~--------~~~~ 589 (765)
..-...+|||.|.-.+. -++-|. |. +++ +-.+.|..+.++++... ..+.+...+.+ .+-+
T Consensus 386 ~l~~~kliAepwD~g~~---gyqvG~--Fpd~~~~aewng~~rD~vr~F~~G~~~--~~~~~a~rl~gS~d~~~~~~~~p 458 (697)
T COG1523 386 VLSGVKLIAEPWDIGPG---GYQVGN--FPDSPRWAEWNGRFRDDVRRFWRGDAG--LVGEFAKRLAGSSDLYKRNGRRP 458 (697)
T ss_pred cccCceeeecchhhcCC---Cccccc--CCCccchhhhCCcccccccceeeCCCc--cHHHHHHHhhcCcchhhccCCCc
Confidence 22345588888854431 122222 22 221 11112222222222110 11122222222 1335
Q ss_pred ccceecccCccccccCccchhhhcc---Chh---------h-HhhhhcCCCCCccchhhHHHHH-HHHHHHHhcCCccee
Q 004253 590 EKCVAYAESHDQALVGDKTIAFWLM---DKD---------M-YDFMALDRPSTPRIDRGIALHK-MIRLVTMGLGGEAYL 655 (765)
Q Consensus 590 ~~~v~f~enHD~~r~g~kt~~~~~~---~~~---------~-~~~~~~~~~~~~~~~~g~~l~k-~a~lllltlpG~P~l 655 (765)
.++|+|+++||.-++.|........ +.+ . +..+.......|.+..+....+ .+.+.++...|+|++
T Consensus 459 ~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~pml 538 (697)
T COG1523 459 SQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGTPML 538 (697)
T ss_pred cceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCCccc
Confidence 6899999999999875542111110 111 0 0111122345555544443333 333446777899999
Q ss_pred ecccccccCCCCCCCCCCCCCCCCCCcCCCCCCCC--cCCccccCCCCccccccccHHHHHHHHHHHHHHcCCCCC
Q 004253 656 NFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSY--DKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTS 729 (765)
Q Consensus 656 ~yyGdE~G~~e~~d~p~~~~~dp~~~~~~gn~~s~--~~~R~~~~w~~~~~~~~~~l~~f~r~Li~lRk~~~~L~~ 729 (765)
-+|||+|+..+ |||++| +.....++|. . ..++.+.+|.+.||+|||.+++|+.
T Consensus 539 -~~gDe~~rtq~-----------------gnnNsYcqdn~inwlDW~-~--~~~~~l~~f~~~lIaLRk~~~af~~ 593 (697)
T COG1523 539 -LAGDEFGRTQY-----------------GNNNAYCQDNEINWLDWS-T--EANNDLVEFTKGLIALRKAHPAFRR 593 (697)
T ss_pred -ccccccccccc-----------------cccccccCCcccceeccC-c--cccHHHHHHHHHHHHHhhhcchhcc
Confidence 89999999886 999999 5678899998 2 5788999999999999999998854
No 21
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=1.5e-53 Score=497.42 Aligned_cols=453 Identities=17% Similarity=0.214 Sum_probs=296.0
Q ss_pred eCCcEEEEEecCC---cCeEEEEeecCCCCCCccCCccCC----CceEEEEeCCC-CCCCCCCCCCCEEEEEeeCCCCcc
Q 004253 201 SDTGITYREWAPG---AKSASLIGDFNNWNPNADIMTQNE----FGVWEIFLPNN-ADGSPPIPHGSRVKIHMDTPSGIK 272 (765)
Q Consensus 201 ~~~gv~FrvWAP~---A~~V~L~gdFN~w~~~~~~m~~~~----~GvW~i~lp~~-~~G~~~~~~g~~y~~~~~~~~~~~ 272 (765)
..+.+++|+..+. +++|.|.....+. ....+|++.. ..+|++.|+.. ..+ -..|.|.+...+...
T Consensus 17 ~~~~~~~~lr~~~~~~~~~v~l~~~~~~~-~~~~~m~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~F~l~~~~~~~ 89 (598)
T PRK10785 17 SKDQLLITLWLTGEDPPQRVMLRCEPDNE-EYLLPMEKQRSQPQVTAWRASLPLNSGQP------RRRYSFKLLWHDRQR 89 (598)
T ss_pred CCCEEEEEEEEcCCCceEEEEEEEEcCCC-EEEEEeEEeecCCCceEEEEEEEcCCCCc------eEEEEEEEEeCCEEE
Confidence 5566888888763 5688887644332 2345777642 34799999853 122 246777775432210
Q ss_pred ccCCccceeeccCCCCCCCCcEEeCCCccccccc--cCCCCCCCCCceEEEeecCCCCCCCC------------------
Q 004253 273 DSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVF--QHPQPKKPKSLRIYEAHVGMSSTEPI------------------ 332 (765)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~--~~~~~~~~~~~vIYE~hv~~~s~~~~------------------ 332 (765)
|. ...+-. . ..|+....|.+ ..+.|.+-++.|||||++..|.....
T Consensus 90 -----~~----~~~g~~----~-~~~~~~~~f~~~~~~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~ 155 (598)
T PRK10785 90 -----WF----TPQGFS----R-RPPARLEQFAVDVPDQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEI 155 (598)
T ss_pred -----EE----cCCcee----e-ccCCCccceEeeCCCCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCCCcc
Confidence 10 000000 0 00100011221 12345566899999999987731100
Q ss_pred -------------------CCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHH
Q 004253 333 -------------------INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLI 393 (765)
Q Consensus 333 -------------------~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV 393 (765)
.|+++|++ ++|||||+||||+|||+||++++. +|||++.||++|+++|||.++||+||
T Consensus 156 ~~~~w~~~~~~~~~~~~f~GGDl~GI~-~kLdYL~~LGv~~I~L~Pif~s~s--~hgYd~~Dy~~iDp~~Gt~~df~~Lv 232 (598)
T PRK10785 156 ILRDWDEPVTAQAGGSTFYGGDLDGIS-EKLPYLKKLGVTALYLNPIFTAPS--VHKYDTEDYRHVDPQLGGDAALLRLR 232 (598)
T ss_pred cccCcCCCcccccccccccCcCHHHHH-HHHHHHHHcCCCEEEeCCcccCCC--CCCcCcccccccCcccCCHHHHHHHH
Confidence 28999999 699999999999999999999875 79999999999999999999999999
Q ss_pred HHHhhcCCEEEEeeccccccCCCcccCc-------CCCCCC---CCCcccCCCCCcccC----CCCCCCCCCHHHHHHHH
Q 004253 394 DKAHELGLLVLMDIVHSHASNNVLDGLN-------MFDGTD---GHYFHSGSRGYHWMW----DSRLFNYGSWEVLRFLL 459 (765)
Q Consensus 394 ~~aH~~GI~VIlDvV~NH~~~~~~~~~~-------~f~g~~---~~yf~~~~~g~~~~w----~~~~ln~~~~~v~~~i~ 459 (765)
++||++||+||||+|+||++.++.+... .+.... ..||.....+....| +.++||++||+|+++|+
T Consensus 233 ~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~ 312 (598)
T PRK10785 233 HATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIY 312 (598)
T ss_pred HHHHHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHH
Confidence 9999999999999999999988742110 011111 124443333322233 24799999999999999
Q ss_pred H----HHHHHHHH-cCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeecc
Q 004253 460 S----NARWWLEE-YKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDV 534 (765)
Q Consensus 460 ~----~l~~W~~e-~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~ 534 (765)
+ ++++|+++ |||||||+|+|..+... + ......+||+++++.+++.+|++++|||.|
T Consensus 313 ~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~--~----------------~~~~~~~f~~~~~~~vk~~~pd~~ligE~~ 374 (598)
T PRK10785 313 RGEDSIVRHWLKAPYNIDGWRLDVVHMLGEG--G----------------GARNNLQHVAGITQAAKEENPEAYVLGEHF 374 (598)
T ss_pred hhhhHHHHHhhcCCCCCcEEEEecHhHhccc--c----------------CccccHHHHHHHHHHHHhhCCCeEEEEecc
Confidence 5 79999997 99999999999765211 0 011245799999999999999999999998
Q ss_pred CCCCccccccccCC---cccchhhhHHHHHHHHHHHhhhhhhh-----hhhhhHhhh----cccccc--ccceecccCcc
Q 004253 535 SGMPTFCIPVQDGG---VGFDYRLQMAIADKWIELLKKRDEDW-----KMGAIVHTM----TNRRWL--EKCVAYAESHD 600 (765)
Q Consensus 535 ~~~p~~~~~~~~gg---~gfD~~l~~~~~d~~~~~lk~~~~~~-----~~~~~~~~l----~~~~~~--~~~v~f~enHD 600 (765)
..... +..++ ..++|. .+...+..++......+ ....+...+ ....+. ...++|++|||
T Consensus 375 ~~~~~----~l~~~~~d~~mny~---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~l~nHD 447 (598)
T PRK10785 375 GDARQ----WLQADVEDAAMNYR---GFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLPHQQQLRQFNQLDSHD 447 (598)
T ss_pred CChhh----hccCccccccccch---hhhhHHHHHhhccccccCccCCCHHHHHHHHHHHHHhCCHHHHHHhhhccCCCc
Confidence 54221 21111 112221 11111122222110000 001111101 111111 13468999999
Q ss_pred ccccCccchhhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhcCCcceeecccccccCCCCCCCCCCCCCCCCC
Q 004253 601 QALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNG 680 (765)
Q Consensus 601 ~~r~g~kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G~~e~~d~p~~~~~dp~~ 680 (765)
++|+... ++ ...++.|++.+++||+||+|+| |||+|+|+.+.. ||
T Consensus 448 ~~R~~~~------~~------------------~~~~~~kla~~ll~t~pGiP~I-YYGdE~G~~g~~--------dp-- 492 (598)
T PRK10785 448 TARFKTL------LG------------------GDKARMPLALVWLFTWPGVPCI-YYGDEVGLDGGN--------DP-- 492 (598)
T ss_pred cchhhhh------hC------------------CCHHHHHHHHHHHHhCCCCcEE-EeeeeccccCCC--------CC--
Confidence 9987431 11 1245678999999999999999 999999997631 12
Q ss_pred CcCCCCCCCCcCCccccCCCCccccccccHHHHHHHHHHHHHHcCCCCCCCeE----------EEEEcCCCEEEEEEecC
Q 004253 681 QFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQY----------VSRKDQGDRGGMMTDLI 750 (765)
Q Consensus 681 ~~~~gn~~s~~~~R~~~~w~~~~~~~~~~l~~f~r~Li~lRk~~~~L~~~~~~----------i~~~~~~~~vlvf~r~s 750 (765)
.+|++|+|.... ..+.|++|+|+||+||+++++|+.+... ..|..+++.|+|+.|.+
T Consensus 493 -----------~~R~~m~W~~~~--~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~~~~v~af~R~~~~~~vlVviN~s 559 (598)
T PRK10785 493 -----------FCRKPFPWDEAK--QDGALLALYQRMIALRKKSQALRRGGCQVLYAEGNVVVFARVLQQQRVLVAINRG 559 (598)
T ss_pred -----------CccCCcCCCccc--CchHHHHHHHHHHHHHhhCcccccCcEEEEEeCCCEEEEEEECCCCEEEEEEECC
Confidence 378999997643 3568999999999999999999877622 13445567777777877
No 22
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=1.5e-51 Score=475.70 Aligned_cols=407 Identities=18% Similarity=0.248 Sum_probs=268.4
Q ss_pred CCCCCceEEEeecCCCCC--CCCCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHH
Q 004253 312 KKPKSLRIYEAHVGMSST--EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDL 389 (765)
Q Consensus 312 ~~~~~~vIYE~hv~~~s~--~~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~ef 389 (765)
.+.++.||||+++++|.. ..+.|+++|++ ++||||++||||+|||+||++++.. .|||++.||++|+++|||.+||
T Consensus 6 ~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~-~~ldyl~~lGv~~i~l~P~~~~~~~-~~gY~~~d~~~id~~~Gt~~d~ 83 (551)
T PRK10933 6 HWWQNGVIYQIYPKSFQDTTGSGTGDLRGVT-QRLDYLQKLGVDAIWLTPFYVSPQV-DNGYDVANYTAIDPTYGTLDDF 83 (551)
T ss_pred hhhhcCeEEEEEchHhhcCCCCCCcCHHHHH-HhhHHHHhCCCCEEEECCCCCCCCC-CCCCCcccCCCcCcccCCHHHH
Confidence 345688999999999964 44679999999 6999999999999999999987653 5899999999999999999999
Q ss_pred HHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCC--CCcc--c------------CCCCCcccCC----------
Q 004253 390 KSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDG--HYFH--S------------GSRGYHWMWD---------- 443 (765)
Q Consensus 390 k~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~--~yf~--~------------~~~g~~~~w~---------- 443 (765)
|+||++||++||+||||+|+||++..+.+.....+...+ .||. . ...+..|.|+
T Consensus 84 ~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~ 163 (551)
T PRK10933 84 DELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHL 163 (551)
T ss_pred HHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeec
Confidence 999999999999999999999999987432111111111 1211 0 0112222232
Q ss_pred ----CCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHH
Q 004253 444 ----SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDM 519 (765)
Q Consensus 444 ----~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~ 519 (765)
.++||+.||+|+++|+++++||++ +||||||||+|++|... .++..........++. ...+..+||+++++.
T Consensus 164 f~~~~pdLn~~np~V~~~l~~~~~~W~~-~GvDGfRlDa~~~i~~~-~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 239 (551)
T PRK10933 164 FAPEQADLNWENPAVRAELKKVCEFWAD-RGVDGLRLDVVNLISKD-QDFPDDLDGDGRRFYT--DGPRAHEFLQEMNRD 239 (551)
T ss_pred ccccCCccCCCCHHHHHHHHHHHHHHHH-CCCcEEEEcchhhcCcC-CCCCCCcccccccccC--CChHHHHHHHHHHHH
Confidence 479999999999999999999996 99999999999998643 1221111001111111 123456899999876
Q ss_pred HhhcCCCceEEeeccCCCCcccccccc--C---CcccchhhhHHHHHHHHHHHhhh---hhhhhhhh---h----Hhhhc
Q 004253 520 IHGLYPEAVSIGEDVSGMPTFCIPVQD--G---GVGFDYRLQMAIADKWIELLKKR---DEDWKMGA---I----VHTMT 584 (765)
Q Consensus 520 v~~~~p~~i~iaE~~~~~p~~~~~~~~--g---g~gfD~~l~~~~~d~~~~~lk~~---~~~~~~~~---~----~~~l~ 584 (765)
+.. .+++++|||.|...+..+..+.. + .+.|+|.. .. ..++... ...|.... + ...+.
T Consensus 240 ~~~-~~~~~~vgE~~~~~~~~~~~y~~~~~~~~~~~fnf~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (551)
T PRK10933 240 VFT-PRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNFHH--LK----VDYPNGEKWTLAKPDFVALKTLFRHWQQGMH 312 (551)
T ss_pred hhc-ccCcEEEEeecCCCHHHHHHhhcccCCeeeeEecHHH--hh----hhhccCCcccccccCHHHHHHHHHHHHHhhc
Confidence 643 34789999998654444444321 1 13344431 11 1111100 00011111 1 11122
Q ss_pred cccccccceecccCccccccCccchhhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhcCCcceeecccccccC
Q 004253 585 NRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGH 664 (765)
Q Consensus 585 ~~~~~~~~v~f~enHD~~r~g~kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G~ 664 (765)
...|. ..|++|||++|+..+ +..+. ....+.+|++++++||+||+|+| |||+|+||
T Consensus 313 ~~~~~---~~fl~NHD~~R~~sr----~g~~~----------------~~~~~~aklla~ll~tlpG~P~I-YyGeEiGm 368 (551)
T PRK10933 313 NVAWN---ALFWCNHDQPRIVSR----FGDEG----------------EYRVPAAKMLAMVLHGMQGTPYI-YQGEEIGM 368 (551)
T ss_pred ccCee---ccccCCCCcccHHHH----cCCch----------------hHHHHHHHHHHHHHHhCCCceEE-EeecccCC
Confidence 23343 578999999987432 11110 11244578899999999999999 99999999
Q ss_pred CCCCCCCC-CCCCCCCC----------------CcCCCCCCCCcCCccccCCCCcccc----------------------
Q 004253 665 PEWIDFPR-GDQRLPNG----------------QFVPGNNFSYDKCRRRFDLGDADYL---------------------- 705 (765)
Q Consensus 665 ~e~~d~p~-~~~~dp~~----------------~~~~gn~~s~~~~R~~~~w~~~~~~---------------------- 705 (765)
.+. .++. ++..|+.. ....-+..++++||.+|+|.+..+.
T Consensus 369 ~~~-~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~ 447 (551)
T PRK10933 369 TNP-HFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEA 447 (551)
T ss_pred CCC-CCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHH
Confidence 872 2221 11122111 0011233488999999999775421
Q ss_pred ---ccccHHHHHHHHHHHHHHcCCCCCCC----------eE-EEEEcCCCEEEEEEecCCccccc
Q 004253 706 ---RYRGMQEFDRAMQHLEEKYGFMTSEH----------QY-VSRKDQGDRGGMMTDLIPSWYMR 756 (765)
Q Consensus 706 ---~~~~l~~f~r~Li~lRk~~~~L~~~~----------~~-i~~~~~~~~vlvf~r~sp~~~~~ 756 (765)
...++++|+|+||+|||++++|..|. .+ ..|..+++.++|+.|++...+-+
T Consensus 448 Q~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~~~~~~~v~af~R~~~~~~~lvv~N~s~~~~~~ 512 (551)
T PRK10933 448 ALADEDSVFYTYQKLIALRKQEPVLTWGDYQDLLPNHPSLWCYRREWQGQTLLVIANLSREPQPW 512 (551)
T ss_pred HhcCcccHHHHHHHHHHHhhcChhhccceeEEeccCCCcEEEEEEEcCCcEEEEEEECCCCCeee
Confidence 22579999999999999999986444 11 23455678899999998766544
No 23
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=1e-51 Score=477.99 Aligned_cols=400 Identities=20% Similarity=0.284 Sum_probs=257.6
Q ss_pred CCCceEEEeecCCCCCC--CCCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHH
Q 004253 314 PKSLRIYEAHVGMSSTE--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKS 391 (765)
Q Consensus 314 ~~~~vIYE~hv~~~s~~--~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~ 391 (765)
-++++|||++|+.|... ++.|+|+|++ ++||||++||||+|||+||++++. .+|||++.||++|+++|||.+|||+
T Consensus 3 ~~~~viYqi~~~~f~d~~~~~~Gdl~gi~-~~Ldyl~~LGv~~i~L~Pi~~~~~-~~~gY~~~dy~~vd~~~Gt~~df~~ 80 (539)
T TIGR02456 3 YKDAVFYEVHVRSFFDSNGDGIGDFPGLT-SKLDYLKWLGVDALWLLPFFQSPL-RDDGYDVSDYRAILPEFGTIDDFKD 80 (539)
T ss_pred cccceEEEEehhHhhcCCCCCccCHHHHH-HhHHHHHHCCCCEEEECCCcCCCC-CCCCCCcccccccChhhCCHHHHHH
Confidence 36889999999999743 4579999999 699999999999999999999875 3699999999999999999999999
Q ss_pred HHHHHhhcCCEEEEeeccccccCCCcccCc---CCCCCCCCCcccC---------------CCCCcccC-----------
Q 004253 392 LIDKAHELGLLVLMDIVHSHASNNVLDGLN---MFDGTDGHYFHSG---------------SRGYHWMW----------- 442 (765)
Q Consensus 392 LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~---~f~g~~~~yf~~~---------------~~g~~~~w----------- 442 (765)
||++||++||+||||+|+||++.++.+... ..+..-..||... ..+..|.|
T Consensus 81 Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~ 160 (539)
T TIGR02456 81 FVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHR 160 (539)
T ss_pred HHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEec
Confidence 999999999999999999999988742110 0111111233210 00111211
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCCh-hHHHHHHHHHH
Q 004253 443 ---DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDV-DAVVYLMLVND 518 (765)
Q Consensus 443 ---~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~-~a~~~l~~~~~ 518 (765)
+.++||++||+||++|++++++|++ +||||||||++++|.... |. ...+. +..+||+++++
T Consensus 161 f~~~~pdln~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~-~~-------------~~~~~p~~~~f~~~~~~ 225 (539)
T TIGR02456 161 FFSHQPDLNYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYERE-GT-------------SCENLPETHEFLKRLRK 225 (539)
T ss_pred ccCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccC-CC-------------ccCCCchHHHHHHHHHH
Confidence 2478999999999999999999998 999999999999885431 11 11222 34689999999
Q ss_pred HHhhcCCCceEEeeccCCCCccccccc-c-C----CcccchhhhHHHHHHHHHHHhhhhhhhhhhhhHhhhccccccccc
Q 004253 519 MIHGLYPEAVSIGEDVSGMPTFCIPVQ-D-G----GVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKC 592 (765)
Q Consensus 519 ~v~~~~p~~i~iaE~~~~~p~~~~~~~-~-g----g~gfD~~l~~~~~d~~~~~lk~~~~~~~~~~~~~~l~~~~~~~~~ 592 (765)
.+++.+|++++|||.+. ++..+..+. . . ...|+|.+...+... ..+.... .............-....
T Consensus 226 ~v~~~~p~~~~iaE~~~-~~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~---l~~~~~~--~l~~~l~~~~~~~~~~~~ 299 (539)
T TIGR02456 226 MVDREYPGRMLLAEANQ-WPEEVVAYFGDEGDPECHMAFNFPVMPRIFMA---LRREDRS--PIIDILKETPDIPDSCQW 299 (539)
T ss_pred HHHHhCCCeEEEEEeCC-CHHHHHHhhCCCCCCeeeeEEChhhhhhhhcc---cccCCHH--HHHHHHHHhhhccCCCce
Confidence 99999999999999753 333222322 1 1 123555543222111 1111000 001111111100011123
Q ss_pred eecccCccccccCccc---hhh----hccChhhHhhhhc-CCCCCccchhhHHHHHHHHHHHHhcCCcceeecccccccC
Q 004253 593 VAYAESHDQALVGDKT---IAF----WLMDKDMYDFMAL-DRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGH 664 (765)
Q Consensus 593 v~f~enHD~~r~g~kt---~~~----~~~~~~~~~~~~~-~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G~ 664 (765)
++|++|||+.++..-+ ..+ +..+..+...... .|-. .......+++|++++++||+||+|+| |||+|+||
T Consensus 300 ~~fl~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~-s~~~~~~~~~kla~~~l~tlpG~P~I-YYG~EiGm 377 (539)
T TIGR02456 300 CIFLRNHDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLA-PLLDNDRRRIELLTALLLSLPGSPIL-YYGDEIGM 377 (539)
T ss_pred eeecCCCCccCccccChhhhhhhhhhccCCcchhcccchhhhhh-hcccccHHHHHHHHHHHHhCCCceEE-EechhhcC
Confidence 5799999997642100 000 0000000000000 0000 01122345679999999999999999 99999999
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCCCcCCccccCCCCccc--------------------------------cccccHHH
Q 004253 665 PEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADY--------------------------------LRYRGMQE 712 (765)
Q Consensus 665 ~e~~d~p~~~~~dp~~~~~~gn~~s~~~~R~~~~w~~~~~--------------------------------~~~~~l~~ 712 (765)
.+-.. ..+.+.+|.+|+|.+..+ ....++++
T Consensus 378 ~~~~~-----------------~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~ 440 (539)
T TIGR02456 378 GDNIW-----------------LGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLH 440 (539)
T ss_pred cCCCc-----------------cCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHH
Confidence 75210 112234566777754311 13457999
Q ss_pred HHHHHHHHHHHcCCCCCCCe----------E-EEEEcCCCEEEEEEecCCcccc
Q 004253 713 FDRAMQHLEEKYGFMTSEHQ----------Y-VSRKDQGDRGGMMTDLIPSWYM 755 (765)
Q Consensus 713 f~r~Li~lRk~~~~L~~~~~----------~-i~~~~~~~~vlvf~r~sp~~~~ 755 (765)
|+|+||+||+++++|..|.. + ..|..+++.+||+.|++...+.
T Consensus 441 ~yr~Li~lRk~~~aL~~G~~~~l~~~~~~v~~f~R~~~~~~vlVv~N~s~~~~~ 494 (539)
T TIGR02456 441 WTRRVLHVRKAHPAFGRGSLTFLPTGNRRVLAFLREYEGERVLCVFNFSRNPQA 494 (539)
T ss_pred HHHHHHHHHhcCcccccCceEEEecCCCCEEEEEEEcCCcEEEEEEeCCCCCEE
Confidence 99999999999999865541 2 1245556778888888855443
No 24
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=1.7e-51 Score=475.65 Aligned_cols=407 Identities=16% Similarity=0.228 Sum_probs=265.0
Q ss_pred CCceEEEeecCCCCC--CCCCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHH
Q 004253 315 KSLRIYEAHVGMSST--EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSL 392 (765)
Q Consensus 315 ~~~vIYE~hv~~~s~--~~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~L 392 (765)
++.+|||+|++.|+. ..+.|+++|++ ++|+||++||||+|||+||++++.. .+||+++||++|+++|||.++|++|
T Consensus 3 ~~~v~Y~i~~~~f~~~~~~~~G~~~gi~-~~l~yl~~lG~~~i~l~Pi~~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~l 80 (543)
T TIGR02403 3 QKKVIYQIYPKSFYDSTGDGTGDLRGII-EKLDYLKKLGVDYIWLNPFYVSPQK-DNGYDVSDYYAINPLFGTMADFEEL 80 (543)
T ss_pred ccCEEEEEEhHHHhcCCCCCccCHHHHH-HhHHHHHHcCCCEEEECCcccCCCC-CCCCCccccCccCcccCCHHHHHHH
Confidence 578999999999964 34679999999 6999999999999999999998753 4799999999999999999999999
Q ss_pred HHHHhhcCCEEEEeeccccccCCCcccCcCC--CCCCCCCcc-cCC------------CCCcccC--------------C
Q 004253 393 IDKAHELGLLVLMDIVHSHASNNVLDGLNMF--DGTDGHYFH-SGS------------RGYHWMW--------------D 443 (765)
Q Consensus 393 V~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f--~g~~~~yf~-~~~------------~g~~~~w--------------~ 443 (765)
|++||++||+||||+|+||++.+|.+..... +..-..||. .+. .+..|.| +
T Consensus 81 v~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~ 160 (543)
T TIGR02403 81 VSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKT 160 (543)
T ss_pred HHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCc
Confidence 9999999999999999999998874221111 111111221 100 0111222 2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhc
Q 004253 444 SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGL 523 (765)
Q Consensus 444 ~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~ 523 (765)
.++||+.||+|+++|+++++||++ +||||||||+|++|..... +...-...-..++ ....+..+||+++++.+++
T Consensus 161 ~pdln~~np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~-~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~- 235 (543)
T TIGR02403 161 QADLNWENPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQF-FEDDEIGDGRRFY--TDGPRVHEYLQEMNQEVFG- 235 (543)
T ss_pred CCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcc-cCCCCCCCCcccc--CCChHHHHHHHHHHHHhhc-
Confidence 478999999999999999999997 8999999999999853311 1000000000011 1123456899999999988
Q ss_pred CCCceEEeeccCCCCcccccccc-CCcccchhhhHHHHHHHHHHHhhh---hhhhh---hhhhH----hhhc-ccccccc
Q 004253 524 YPEAVSIGEDVSGMPTFCIPVQD-GGVGFDYRLQMAIADKWIELLKKR---DEDWK---MGAIV----HTMT-NRRWLEK 591 (765)
Q Consensus 524 ~p~~i~iaE~~~~~p~~~~~~~~-gg~gfD~~l~~~~~d~~~~~lk~~---~~~~~---~~~~~----~~l~-~~~~~~~ 591 (765)
.|++++|||.|...+..+..+.. .+-.+|..+++... ...+..+. ...+. ...+. ..+. ...|
T Consensus 236 ~~~~~lvgE~~~~~~~~~~~y~~~~~~~~d~~~nf~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--- 310 (543)
T TIGR02403 236 DNDSVTVGEMSSTTIENCIRYSNPENKELSMVFTFHHL--KVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQAGGGW--- 310 (543)
T ss_pred cCCeEEEEEeCCCCHHHHHhhhCCCCCeeCeEEChhhh--hchhccccccccCCCCHHHHHHHHHHHHHhccccCcc---
Confidence 89999999998765554444432 11123322222110 01111000 00011 11111 1111 1222
Q ss_pred ceecccCccccccCccchhhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhcCCcceeecccccccCCCCCCCC
Q 004253 592 CVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFP 671 (765)
Q Consensus 592 ~v~f~enHD~~r~g~kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G~~e~~d~p 671 (765)
.++|++|||++|+..+ +..+. ....+.+|++++++|++||+|+| |||+|+||.+....+
T Consensus 311 ~~~fl~NHD~~R~~s~----~g~~~----------------~~~~~~~k~~a~ll~tlpG~P~I-YYGdEiGm~~~~~~~ 369 (543)
T TIGR02403 311 NALFWNNHDQPRAVSR----FGDDG----------------EYRVESAKMLAAAIHLLRGTPYI-YQGEEIGMTNPKFTN 369 (543)
T ss_pred eeeecCCCChhhHHHh----cCCch----------------hhHHHHHHHHHHHHHHCCCCeEE-EeccccCCCCCCCCC
Confidence 3579999999987432 11000 00124567888889999999999 999999998631100
Q ss_pred CCCCCCCCCC----------------cCCCCCCCCcCCccccCCCCccc-------------------------cccccH
Q 004253 672 RGDQRLPNGQ----------------FVPGNNFSYDKCRRRFDLGDADY-------------------------LRYRGM 710 (765)
Q Consensus 672 ~~~~~dp~~~----------------~~~gn~~s~~~~R~~~~w~~~~~-------------------------~~~~~l 710 (765)
-.+..|+... ...-+..+++.+|.+|+|.+..+ ....+|
T Consensus 370 ~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sl 449 (543)
T TIGR02403 370 IEDYRDVESLNAYDILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSI 449 (543)
T ss_pred HHHhcCHHHHHHHHHHhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccH
Confidence 0011121110 00123457889999999976432 124689
Q ss_pred HHHHHHHHHHHHHcCCCCCCC----------eE-EEEEcCCCEEEEEEecCCccc
Q 004253 711 QEFDRAMQHLEEKYGFMTSEH----------QY-VSRKDQGDRGGMMTDLIPSWY 754 (765)
Q Consensus 711 ~~f~r~Li~lRk~~~~L~~~~----------~~-i~~~~~~~~vlvf~r~sp~~~ 754 (765)
++|+|+||+|||++++|..|. .+ ..|..++++++|+.|++...+
T Consensus 450 l~~yr~Li~lRk~~~aL~~G~~~~~~~~~~~v~a~~R~~~~~~~lVv~N~s~~~~ 504 (543)
T TIGR02403 450 FYFYQKLIALRKSEPVITDGDYQFLLPDDPSVWAYTRTYKNQKLLVINNFYGEEK 504 (543)
T ss_pred HHHHHHHHHHHhhcccccCccEEEeecCCCcEEEEEEEcCCcEEEEEEECCCCCe
Confidence 999999999999999986544 12 234556778899999886654
No 25
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=5.9e-49 Score=458.84 Aligned_cols=358 Identities=17% Similarity=0.225 Sum_probs=237.7
Q ss_pred CCCCceEEEeecCCCCCCC------------C--------CCCHHhhHhhhhhHHHHcCCCEEEECCcccCC--------
Q 004253 313 KPKSLRIYEAHVGMSSTEP------------I--------INTYANFRDDVLPRIKRLGYNAVQIMAVQEHS-------- 364 (765)
Q Consensus 313 ~~~~~vIYE~hv~~~s~~~------------~--------~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~-------- 364 (765)
..++.+||+|.+..|...+ + .|+++|++ ++||||++||||+|||+||+++.
T Consensus 186 ~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~-~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~ 264 (683)
T PRK09505 186 DWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLT-EKLDYLQQLGVNALWISSPLEQIHGWVGGGT 264 (683)
T ss_pred hhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHH-HhhHHHHHcCCCEEEeCcccccccccccccc
Confidence 3477899999998884221 1 28999999 69999999999999999999862
Q ss_pred -----CCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccCCCccc-----CcC-C-------CCC
Q 004253 365 -----YYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDG-----LNM-F-------DGT 426 (765)
Q Consensus 365 -----~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~-----~~~-f-------~g~ 426 (765)
.+++|||++.||+.++++|||.+|||+||++||++||+||||+|+||++..+... +.. + .+.
T Consensus 265 ~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~ 344 (683)
T PRK09505 265 KGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTL 344 (683)
T ss_pred ccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhcccccccc
Confidence 3577999999999999999999999999999999999999999999999532100 000 0 000
Q ss_pred ----------CCCCcccC--------CCCCcccC-------------------------CCCCCCCC-------------
Q 004253 427 ----------DGHYFHSG--------SRGYHWMW-------------------------DSRLFNYG------------- 450 (765)
Q Consensus 427 ----------~~~yf~~~--------~~g~~~~w-------------------------~~~~ln~~------------- 450 (765)
.+.+|+.. ...+...| ..++||..
T Consensus 345 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~ 424 (683)
T PRK09505 345 GERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYAN 424 (683)
T ss_pred CcccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhhhc
Confidence 01111110 00111111 12445554
Q ss_pred ----------CHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHH
Q 004253 451 ----------SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMI 520 (765)
Q Consensus 451 ----------~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v 520 (765)
||+|+++|++++++|+++|||||||+|++++|. .+||++++..+
T Consensus 425 ~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~--------------------------~~FW~~~~~~~ 478 (683)
T PRK09505 425 KPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVE--------------------------LPAWQQLKQEA 478 (683)
T ss_pred CcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCC--------------------------HHHHHHHHHHH
Confidence 569999999999999999999999999999882 23666665554
Q ss_pred -------hhcCC-------CceEEeeccCCCCccccccccCC--cccchhhhHHHHHHHHHHHhhhhhhhhhhhhHhhhc
Q 004253 521 -------HGLYP-------EAVSIGEDVSGMPTFCIPVQDGG--VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMT 584 (765)
Q Consensus 521 -------~~~~p-------~~i~iaE~~~~~p~~~~~~~~gg--~gfD~~l~~~~~d~~~~~lk~~~~~~~~~~~~~~l~ 584 (765)
++.+| ++++|||.|...+... .+...+ ..|+|.+.....+. ...+......+. .+...+
T Consensus 479 ~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~~~-~y~~~~fDsv~NF~~~~~~~~~-~~~~~~l~~~~~--~~~~~~- 553 (683)
T PRK09505 479 SAALAEWKKANPDKALDDAPFWMTGEAWGHGVMKS-DYYRHGFDAMINFDYQEQAAKA-VDCLAQMDPTYQ--QMAEKL- 553 (683)
T ss_pred HHHHHHHHHhccccccccCCeEEEEEecCCchhhH-HHHhhcCccccCchHHHHHHHH-HHHHHHHHHHHH--HHhhhc-
Confidence 33334 5899999996544322 222222 12444433222111 111211111111 111111
Q ss_pred cccccccceecccCccccccCccchhhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhcCCcceeecccccccC
Q 004253 585 NRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGH 664 (765)
Q Consensus 585 ~~~~~~~~v~f~enHD~~r~g~kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G~ 664 (765)
..+ ..++|++|||+.|+.+.. . ..+++|++++++|++||+|+| |||+|+||
T Consensus 554 -~~~--~~l~FLdNHDt~Rf~s~~------~-------------------~~~~~klAaall~tlpGiP~I-YYGdEiGm 604 (683)
T PRK09505 554 -QDF--NVLSYLSSHDTRLFFEGG------Q-------------------SYAKQRRAAELLLLAPGAVQI-YYGDESAR 604 (683)
T ss_pred -Ccc--ceeecccCCChhhhhhhc------C-------------------chHHHHHHHHHHHhCCCCcEE-EechhhCc
Confidence 112 357899999999884321 0 024668889999999999999 99999999
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCCCcCCccccCCCCccccccccHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCCEEE
Q 004253 665 PEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRGG 744 (765)
Q Consensus 665 ~e~~d~p~~~~~dp~~~~~~gn~~s~~~~R~~~~w~~~~~~~~~~l~~f~r~Li~lRk~~~~L~~~~~~i~~~~~~~~vl 744 (765)
.... . ..|| ...+|++|+|.+.. .....|++|+|+|++||+++|+|..|...+. ..+.++
T Consensus 605 ~gg~-~----g~DP-----------~~~~R~~M~W~~~~-~~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l---~~~~~~ 664 (683)
T PRK09505 605 PFGP-T----GSDP-----------LQGTRSDMNWQEVS-GKSAALLAHWQKLGQFRARHPAIGAGKQTTL---SLKQYY 664 (683)
T ss_pred cCCC-C----CCCC-----------cccccccCCccccc-cchHHHHHHHHHHHHHHhhCHHhhCCceEEe---ccCCEE
Confidence 6521 0 0112 22489999997532 2345799999999999999999988874332 234577
Q ss_pred EEEecCC
Q 004253 745 MMTDLIP 751 (765)
Q Consensus 745 vf~r~sp 751 (765)
||.|...
T Consensus 665 aF~R~~~ 671 (683)
T PRK09505 665 AFVREHG 671 (683)
T ss_pred EEEEEeC
Confidence 7777554
No 26
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=2.4e-45 Score=419.69 Aligned_cols=299 Identities=19% Similarity=0.258 Sum_probs=214.9
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEECCcccCCC-CCCCCCcccccc---------CCCCCCCCHHHHHHHHHHHhhcCCEE
Q 004253 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSY-YASFGYHVTNFF---------APSSRCGTPDDLKSLIDKAHELGLLV 403 (765)
Q Consensus 334 Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~-~~~~GY~~~~~~---------a~~~~~Gt~~efk~LV~~aH~~GI~V 403 (765)
.+|++++ ++||||++||||+|||+||++++. ..+|||++.||| .|+|+|||.+|||+||++||++||+|
T Consensus 19 ~~~~~I~-~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 19 KLWNRLA-ERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred cHHHHHH-HHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 4678899 699999999999999999999873 456999999999 78999999999999999999999999
Q ss_pred EEeeccccccCCCc-ccC-----------------------cCCC--CCCC-------CCcccCCCC-------------
Q 004253 404 LMDIVHSHASNNVL-DGL-----------------------NMFD--GTDG-------HYFHSGSRG------------- 437 (765)
Q Consensus 404 IlDvV~NH~~~~~~-~~~-----------------------~~f~--g~~~-------~yf~~~~~g------------- 437 (765)
|||+|+||++.... .+. ..|. +.+. .|++..+..
T Consensus 98 i~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (479)
T PRK09441 98 YADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKI 177 (479)
T ss_pred EEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEe
Confidence 99999999986432 110 0010 0000 122111100
Q ss_pred ----Cccc--C----------CCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCccc
Q 004253 438 ----YHWM--W----------DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYF 501 (765)
Q Consensus 438 ----~~~~--w----------~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~ 501 (765)
..|. | ..++||++||+|+++|++++++|++++||||||+|+|++|.
T Consensus 178 ~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~------------------ 239 (479)
T PRK09441 178 VGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHID------------------ 239 (479)
T ss_pred cCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC------------------
Confidence 1111 1 14699999999999999999999999999999999999882
Q ss_pred CccCChhHHHHHHHHHHHHhhcC-CCceEEeeccCCCCccccccccC----CcccchhhhHHHHHHHHHHHhhhhhhhhh
Q 004253 502 GFATDVDAVVYLMLVNDMIHGLY-PEAVSIGEDVSGMPTFCIPVQDG----GVGFDYRLQMAIADKWIELLKKRDEDWKM 576 (765)
Q Consensus 502 g~~~d~~a~~~l~~~~~~v~~~~-p~~i~iaE~~~~~p~~~~~~~~g----g~gfD~~l~~~~~d~~~~~lk~~~~~~~~ 576 (765)
..||+.+.+.+++.. |+++++||.|.+.+..+..+..+ ...|||.++..+.+.+.. . ....+
T Consensus 240 --------~~f~~~~~~~~~~~~~~~~~~vGE~~~~~~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~---~--~~~~l 306 (479)
T PRK09441 240 --------AWFIKEWIEHVREVAGKDLFIVGEYWSHDVDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQ---G--RDYDM 306 (479)
T ss_pred --------HHHHHHHHHHHHHhcCCCeEEEEeecCCChHHHHHHHHhcCCCceEecHHHHHHHHHHHhc---C--Cccch
Confidence 248889999888765 68999999998877655555432 236899888776554321 1 11222
Q ss_pred hhhHhhhccccccccceecccCccccccCccchhhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhcC-Cccee
Q 004253 577 GAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLG-GEAYL 655 (765)
Q Consensus 577 ~~~~~~l~~~~~~~~~v~f~enHD~~r~g~kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltlp-G~P~l 655 (765)
..+.........+.+.++|++|||+.|+... +.. ......++|.+++||+| |+|+|
T Consensus 307 ~~~~~~~~~~~~~~~~~~FldNHD~~R~~~~------~~~-----------------~~~~~~~lA~a~llT~p~GiP~I 363 (479)
T PRK09441 307 RNIFDGTLVEADPFHAVTFVDNHDTQPGQAL------ESP-----------------VEPWFKPLAYALILLREEGYPCV 363 (479)
T ss_pred HhhhCcchhhcCcccceeeeccccCCCcccc------ccc-----------------ccccchHHHHHHHHhCCCCceee
Confidence 2222111112234567899999999998531 000 00112368889999999 99999
Q ss_pred ecccccccCCCCCCCCCCCCCCCCCCcCCCCCCCCcCCccccCCCCccccccccHHHHHHHHHHHHHHcC
Q 004253 656 NFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYG 725 (765)
Q Consensus 656 ~yyGdE~G~~e~~d~p~~~~~dp~~~~~~gn~~s~~~~R~~~~w~~~~~~~~~~l~~f~r~Li~lRk~~~ 725 (765)
|||+|+|+.+.. . ...+.+++|+|++||+++.
T Consensus 364 -YYGdE~g~~g~~-----------------~--------------------~~~l~~~i~~Li~lRk~~~ 395 (479)
T PRK09441 364 -FYGDYYGASGYY-----------------I--------------------DMPFKEKLDKLLLARKNFA 395 (479)
T ss_pred -EeccccCCCCCc-----------------c--------------------cchHHHHHHHHHHHHHHhC
Confidence 999999986520 0 1247889999999999864
No 27
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=4.9e-45 Score=390.61 Aligned_cols=278 Identities=23% Similarity=0.354 Sum_probs=193.5
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecccccc
Q 004253 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (765)
Q Consensus 334 Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~ 413 (765)
|||+|++ ++|||||+||||+||||||++.+. .+|||+|+||++|+++|||.+|||+||++||++||+||||+|+||++
T Consensus 1 Gd~~gi~-~kLdyl~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 1 GDFRGII-DKLDYLKDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SSHHHHH-HTHHHHHHHTESEEEESS-EESSS-STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CCHHHHH-HhhHHHHHcCCCceeccccccccc-ccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 8999999 699999999999999999999876 68999999999999999999999999999999999999999999999
Q ss_pred CCCccc---CcCCCCCCCCCcc-------------cCCCCCcc-----------cCCCCCCCCCCHHHHHHHHHHHHHHH
Q 004253 414 NNVLDG---LNMFDGTDGHYFH-------------SGSRGYHW-----------MWDSRLFNYGSWEVLRFLLSNARWWL 466 (765)
Q Consensus 414 ~~~~~~---~~~f~g~~~~yf~-------------~~~~g~~~-----------~w~~~~ln~~~~~v~~~i~~~l~~W~ 466 (765)
.++.+. ....+.....||. ....+..+ ..+.++||+.|++||++|++++++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~ 158 (316)
T PF00128_consen 79 DDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWI 158 (316)
T ss_dssp TTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchh
Confidence 987431 1111111122222 00111111 12347899999999999999999999
Q ss_pred HHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeeccCCCCcccccccc
Q 004253 467 EEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQD 546 (765)
Q Consensus 467 ~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~~~p~~~~~~~~ 546 (765)
+ ++|||||||++++|. ..+|+.++..+++..|++++|||.+.+....+.....
T Consensus 159 ~-~giDGfR~D~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~ 211 (316)
T PF00128_consen 159 E-EGIDGFRLDAAKHIP--------------------------KEFWKEFRDEVKEEKPDFFLIGEVWGGDNEDLRQYAY 211 (316)
T ss_dssp H-TTESEEEETTGGGSS--------------------------HHHHHHHHHHHHHHHTTSEEEEEESSSSHHHHHHHHH
T ss_pred h-ceEeEEEEccccccc--------------------------hhhHHHHhhhhhhhccccceeeeeccCCccccchhhh
Confidence 8 679999999999883 2589999999999889999999999765432322211
Q ss_pred -CCc----ccchhhhHHHHHHHHHHHhhhh-hhhhhhhhHh-hhccccccccceecccCccccccCccchhhhccChhhH
Q 004253 547 -GGV----GFDYRLQMAIADKWIELLKKRD-EDWKMGAIVH-TMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMY 619 (765)
Q Consensus 547 -gg~----gfD~~l~~~~~d~~~~~lk~~~-~~~~~~~~~~-~l~~~~~~~~~v~f~enHD~~r~g~kt~~~~~~~~~~~ 619 (765)
+.. .+++....... .......... .......... ...........++|++|||+.|+.....
T Consensus 212 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~---------- 280 (316)
T PF00128_consen 212 DGYFDLDSVFDFPDYGLRS-SFFDFWRHGDGDASDLANWLSSWQSSYPDPYRAVNFLENHDTPRFASRFG---------- 280 (316)
T ss_dssp HGTTSHSEEEHHHHHHHHH-HHHHHHTTTSSHHHHHHHHHHHHHHHSTTGGGEEEESSHTTSSTHHHHTT----------
T ss_pred ccccccchhhccccccccc-chhhhhccccchhhhhhhhhhhhhhhhcccceeeecccccccccchhhhc----------
Confidence 111 13333211111 1110011000 0001111111 1111111346799999999998643210
Q ss_pred hhhhcCCCCCccchhhHHHHHHHHHHHHhcCCcceeecccccccCCC
Q 004253 620 DFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPE 666 (765)
Q Consensus 620 ~~~~~~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G~~e 666 (765)
....+.+++.+++|++||+|+| |||+|+|+.+
T Consensus 281 --------------~~~~~~~~a~~~ll~~pG~P~i-y~G~E~g~~~ 312 (316)
T PF00128_consen 281 --------------NNRDRLKLALAFLLTSPGIPMI-YYGDEIGMTG 312 (316)
T ss_dssp --------------THHHHHHHHHHHHHHSSSEEEE-ETTGGGTBBT
T ss_pred --------------ccchHHHHHHHHHHcCCCccEE-EeChhccCCC
Confidence 1122678999999999999999 9999999987
No 28
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=1.2e-40 Score=372.55 Aligned_cols=307 Identities=19% Similarity=0.242 Sum_probs=208.0
Q ss_pred CCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHhhcCCEEEEeeccc
Q 004253 332 IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (765)
Q Consensus 332 ~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~-~~~Gt~~efk~LV~~aH~~GI~VIlDvV~N 410 (765)
..|.|++++ ++||||++||||+|||+|+++... ++||++.|||.++ ++|||.+|||+||++||++||+||+|+|+|
T Consensus 39 ~gg~~~~i~-~kldyL~~LGvtaIWL~P~~~s~s--~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~N 115 (428)
T PLN00196 39 NGGWYNFLM-GKVDDIAAAGITHVWLPPPSHSVS--EQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVIN 115 (428)
T ss_pred CCcCHHHHH-HHHHHHHHcCCCEEEeCCCCCCCC--CCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 347899999 699999999999999999998753 6999999999998 699999999999999999999999999999
Q ss_pred cccCCCcccCc---CCCCC----CCCCcc----cC------CCCCcc----cCCCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 004253 411 HASNNVLDGLN---MFDGT----DGHYFH----SG------SRGYHW----MWDSRLFNYGSWEVLRFLLSNARWWLEEY 469 (765)
Q Consensus 411 H~~~~~~~~~~---~f~g~----~~~yf~----~~------~~g~~~----~w~~~~ln~~~~~v~~~i~~~l~~W~~e~ 469 (765)
|++.++.+... .|.+. ...|+. .+ ..+... ..+.++||+.||+|+++|+++++||++++
T Consensus 116 H~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~ 195 (428)
T PLN00196 116 HRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDI 195 (428)
T ss_pred CcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCC
Confidence 99976532211 12211 112221 00 001111 11348999999999999999999998889
Q ss_pred CCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeeccCCCCc----------
Q 004253 470 KFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPT---------- 539 (765)
Q Consensus 470 gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~~~p~---------- 539 (765)
||||||||+|++|.. .|++.+ +++..| .++|||.|.+..-
T Consensus 196 GiDG~RlD~ak~~~~--------------------------~f~~~~---v~~~~p-~f~VGE~W~~~~~~~~~~~~~~~ 245 (428)
T PLN00196 196 GFDAWRLDFAKGYSA--------------------------EVAKVY---IDGTEP-SFAVAEIWTSMAYGGDGKPEYDQ 245 (428)
T ss_pred CCCEEEeehhhhCCH--------------------------HHHHHH---HHccCC-cEEEEEEeccccccccCCccccc
Confidence 999999999988721 255543 445556 7899999975210
Q ss_pred -----ccccccc--C-----CcccchhhhHHHHHHHHHHHhhhhhhhhhhhhHhhhc--cccccccceecccCccccccC
Q 004253 540 -----FCIPVQD--G-----GVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMT--NRRWLEKCVAYAESHDQALVG 605 (765)
Q Consensus 540 -----~~~~~~~--g-----g~gfD~~l~~~~~d~~~~~lk~~~~~~~~~~~~~~l~--~~~~~~~~v~f~enHD~~r~g 605 (765)
.+..+.+ + .+.|||.+...... .+.+ +.|.+.+...... -..++.++|+|++|||+.|..
T Consensus 246 ~~~r~~l~~~l~~~g~~~~~~~~fDF~~~~~~~~----~~~~--~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~ 319 (428)
T PLN00196 246 NAHRQELVNWVDRVGGAASPATVFDFTTKGILNV----AVEG--ELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQ 319 (428)
T ss_pred hhhHHHHHHHHHhcCCccCcceeecccchHHHHH----HhcC--CchhhhhhcccCcchhhcChhhceeeccCCCCcccc
Confidence 0011111 1 12477776542221 1111 2232211110011 124667899999999998863
Q ss_pred ccchhhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhcCCcceeecccccccCCCCCCCCCCCCCCCCCCcCCC
Q 004253 606 DKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPG 685 (765)
Q Consensus 606 ~kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G~~e~~d~p~~~~~dp~~~~~~g 685 (765)
.- +..+ ....+++.+++||+||+||| |||+=
T Consensus 320 ~~----~~~~--------------------~~~~~lAyA~iLT~pG~P~I-yYg~~------------------------ 350 (428)
T PLN00196 320 HM----WPFP--------------------SDKVMQGYAYILTHPGNPCI-FYDHF------------------------ 350 (428)
T ss_pred cc----CCCc--------------------cchHHHHHHHHHcCCCcceE-eeCCC------------------------
Confidence 21 1000 22347889999999999999 99941
Q ss_pred CCCCCcCCccccCCCCccccccccHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCCEEEEEEe
Q 004253 686 NNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRGGMMTD 748 (765)
Q Consensus 686 n~~s~~~~R~~~~w~~~~~~~~~~l~~f~r~Li~lRk~~~~L~~~~~~i~~~~~~~~vlvf~r 748 (765)
++| .+.+++++|+++||.++++..+...++..+ +.++|++|
T Consensus 351 -----------~~~---------~~~~~i~~Li~~Rk~~~~~~~g~~~~~~a~--~d~yv~~~ 391 (428)
T PLN00196 351 -----------FDW---------GLKEEIAALVSIRNRNGITPTSELRIMEAD--ADLYLAEI 391 (428)
T ss_pred -----------cCc---------cHHHHHHHHHHHHHhCCCcCCccEEEEEec--CCEEEEEE
Confidence 222 234589999999999999988875554333 22555554
No 29
>PLN02361 alpha-amylase
Probab=100.00 E-value=4.1e-40 Score=364.39 Aligned_cols=294 Identities=16% Similarity=0.249 Sum_probs=207.4
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccC
Q 004253 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~ 414 (765)
-|++++ ++||||++||||+|||+|++++.. ++||+|.|||.++++|||.+|||+||++||++||+||+|+|+||++.
T Consensus 27 ~w~~i~-~kl~~l~~lG~t~iwl~P~~~~~~--~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g 103 (401)
T PLN02361 27 WWRNLE-GKVPDLAKSGFTSAWLPPPSQSLA--PEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVG 103 (401)
T ss_pred HHHHHH-HHHHHHHHcCCCEEEeCCCCcCCC--CCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccccC
Confidence 578998 699999999999999999998754 59999999999999999999999999999999999999999999964
Q ss_pred CCc---ccCcCCCCCCCCCc-----cc-CCCCCccc----CCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEeccccc
Q 004253 415 NVL---DGLNMFDGTDGHYF-----HS-GSRGYHWM----WDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 481 (765)
Q Consensus 415 ~~~---~~~~~f~g~~~~yf-----~~-~~~g~~~~----w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~ 481 (765)
... ...+.|.|....|- .. ...+.+.. .+.++||+.||+||++|++++++|++++||||||+|+|++
T Consensus 104 ~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~ 183 (401)
T PLN02361 104 TTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKG 183 (401)
T ss_pred CCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 321 11223333211111 10 00111111 1348999999999999999999777789999999999998
Q ss_pred ccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeeccCCCC----c------------cccccc
Q 004253 482 MMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMP----T------------FCIPVQ 545 (765)
Q Consensus 482 m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~~~p----~------------~~~~~~ 545 (765)
|. ..|++++.+.+ .| .+++||.|.+.. . .+..+.
T Consensus 184 ~~--------------------------~~f~~~~~~~~---~p-~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~ 233 (401)
T PLN02361 184 YS--------------------------AKFVKEYIEAA---KP-LFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWI 233 (401)
T ss_pred CC--------------------------HHHHHHHHHhh---CC-eEEEEEEecCCCcCCcccccchhhhhHHHHHHHHH
Confidence 82 24777776544 34 889999997632 1 011122
Q ss_pred c--CC--cccchhhhHHHHHHHHHHHhhhhhhhhhhhhHhhhc--cccccccceecccCccccccCccchhhhccChhhH
Q 004253 546 D--GG--VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMT--NRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMY 619 (765)
Q Consensus 546 ~--gg--~gfD~~l~~~~~d~~~~~lk~~~~~~~~~~~~~~l~--~~~~~~~~v~f~enHD~~r~g~kt~~~~~~~~~~~ 619 (765)
. ++ ..|||++...+.+.+. .+-|.+.+.....+ -..|+.++|+|++|||+.|... .|..+
T Consensus 234 ~~~~~~~~~fDF~l~~~l~~a~~------~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~----~~~~~---- 299 (401)
T PLN02361 234 DGTGGLSAAFDFTTKGILQEAVK------GQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQA----HWPFP---- 299 (401)
T ss_pred HhcCCcceeecHHHHHHHHHHHh------hhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhh----ccCCc----
Confidence 2 21 2589988877765541 11233222111011 1246788999999999987521 12111
Q ss_pred hhhhcCCCCCccchhhHHHHHHHHHHHHhcCCcceeecccccccCCCCCCCCCCCCCCCCCCcCCCCCCCCcCCccccCC
Q 004253 620 DFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDL 699 (765)
Q Consensus 620 ~~~~~~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G~~e~~d~p~~~~~dp~~~~~~gn~~s~~~~R~~~~w 699 (765)
....+++.+++||+||+||| |||+=+ +|
T Consensus 300 ----------------~~~~~~AyA~iLT~pG~P~V-yyg~~~-----------------------------------~~ 327 (401)
T PLN02361 300 ----------------SDHIMEGYAYILTHPGIPTV-FYDHFY-----------------------------------DW 327 (401)
T ss_pred ----------------hHHHHHHHHHHHCCCCcCeE-eecccc-----------------------------------CC
Confidence 23446678899999999999 998611 12
Q ss_pred CCccccccccHHHHHHHHHHHHHHcCCCCCCCeEE
Q 004253 700 GDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYV 734 (765)
Q Consensus 700 ~~~~~~~~~~l~~f~r~Li~lRk~~~~L~~~~~~i 734 (765)
. ..+.+++++|+.|||.+++++.+...+
T Consensus 328 ~-------~~~~~~I~~Li~lRk~~~~~~~s~~~i 355 (401)
T PLN02361 328 G-------GSIHDQIVKLIDIRKRQDIHSRSSIRI 355 (401)
T ss_pred C-------hHHHHHHHHHHHHHHhCCCCCCCcEEE
Confidence 1 146789999999999999998877444
No 30
>PLN02784 alpha-amylase
Probab=100.00 E-value=1.9e-36 Score=351.32 Aligned_cols=282 Identities=21% Similarity=0.294 Sum_probs=191.6
Q ss_pred CceEEEeecCCCCCC-CCCCC-HHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHH
Q 004253 316 SLRIYEAHVGMSSTE-PIINT-YANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLI 393 (765)
Q Consensus 316 ~~vIYE~hv~~~s~~-~~~Gt-~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV 393 (765)
....||+.+..|..+ ++-|. |++++ ++||||++||||+|||+|++++.. ++||+|.|||.++++|||.+|||+||
T Consensus 498 ~~~~~eVmlQgF~Wds~~dg~w~~~I~-ekldyL~~LG~taIWLpP~~~s~s--~~GY~p~D~y~lds~yGT~~ELk~LI 574 (894)
T PLN02784 498 TGSGFEILCQGFNWESHKSGRWYMELG-EKAAELSSLGFTVVWLPPPTESVS--PEGYMPKDLYNLNSRYGTIDELKDLV 574 (894)
T ss_pred ccCCceEEEEeEEcCcCCCCchHHHHH-HHHHHHHHhCCCEEEeCCCCCCCC--CCCcCcccccccCcCcCCHHHHHHHH
Confidence 345778877766422 22233 68888 699999999999999999998764 69999999999999999999999999
Q ss_pred HHHhhcCCEEEEeeccccccCCCcc--c-CcCCCCCC----------CCCcccCCCCCccc----CCCCCCCCCCHHHHH
Q 004253 394 DKAHELGLLVLMDIVHSHASNNVLD--G-LNMFDGTD----------GHYFHSGSRGYHWM----WDSRLFNYGSWEVLR 456 (765)
Q Consensus 394 ~~aH~~GI~VIlDvV~NH~~~~~~~--~-~~~f~g~~----------~~yf~~~~~g~~~~----w~~~~ln~~~~~v~~ 456 (765)
++||++||+||+|+|+||++..... + .+.|.+.. ...|. .++..+. ...++||+.||+||+
T Consensus 575 ~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~--GrG~~~sgddf~~lPDLDh~npeVR~ 652 (894)
T PLN02784 575 KSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQ--GRGNKSSGDNFHAAPNIDHSQDFVRK 652 (894)
T ss_pred HHHHHCCCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccC--CcCCcCcccccCcCCcCCCCCHHHHH
Confidence 9999999999999999999864211 1 11222210 00111 1111111 134899999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeeccCC
Q 004253 457 FLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSG 536 (765)
Q Consensus 457 ~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~~ 536 (765)
.|.++++||++++||||||||+|+++.. .|++.. ++...| .++|||.|++
T Consensus 653 eL~~WlkWL~~e~G~DGfRLDaVKgf~~--------------------------~Fvkey---v~a~kp-~F~VGEyWd~ 702 (894)
T PLN02784 653 DLKEWLCWMRKEVGYDGWRLDFVRGFWG--------------------------GYVKDY---MEASEP-YFAVGEYWDS 702 (894)
T ss_pred HHHHHHHHHHhccCCCEEEEeccCCCCH--------------------------HHHHHH---HhccCC-cEEEEEeccc
Confidence 9999999999999999999999986521 133333 333444 7999999987
Q ss_pred CCc--------------ccccccc--CC--cccchhhhHHHHHHHHHHHhhhhhhhhhhhhHh---hhccccccccceec
Q 004253 537 MPT--------------FCIPVQD--GG--VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVH---TMTNRRWLEKCVAY 595 (765)
Q Consensus 537 ~p~--------------~~~~~~~--gg--~gfD~~l~~~~~d~~~~~lk~~~~~~~~~~~~~---~l~~~~~~~~~v~f 595 (765)
... .+..+.+ ++ ..|||.++..+.+.+. ..+.|.+..... ++. ..|++++|+|
T Consensus 703 ~~~~~g~~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~~-----~~e~wrL~d~~g~~~glv-~~~P~~AVTF 776 (894)
T PLN02784 703 LSYTYGEMDYNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSALE-----RCEYWRLSDQKGKPPGVV-GWWPSRAVTF 776 (894)
T ss_pred cccccCccccCchhHHHHHHHHHHhCCCceeeechhHHHHHHHHHh-----ccchhhhhhccCCCCCee-ccccCceEEE
Confidence 321 1122222 11 3488887776654331 233444432221 111 2578899999
Q ss_pred ccCccccccCccchhhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhcCCcceeeccccccc
Q 004253 596 AESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFG 663 (765)
Q Consensus 596 ~enHD~~r~g~kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G 663 (765)
++|||+.+.. ..|..+. ....++++++||.||+||| |||+=||
T Consensus 777 VDNHDTg~~Q----~~w~~p~--------------------~k~~~AYAyILthpG~PcV-Fy~h~y~ 819 (894)
T PLN02784 777 IENHDTGSTQ----GHWRFPE--------------------GKEMQGYAYILTHPGTPAV-FYDHIFS 819 (894)
T ss_pred ecCCCCCCCc----ccCCCCc--------------------cchhhHHHHHHcCCCcceE-Eehhhhh
Confidence 9999996531 1232111 1113478888899999999 9988653
No 31
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=1.6e-36 Score=339.28 Aligned_cols=372 Identities=13% Similarity=0.101 Sum_probs=236.1
Q ss_pred CCCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccc
Q 004253 331 PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (765)
Q Consensus 331 ~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~N 410 (765)
++.|++.++++ + ||++ ||++|||+|+|+++. .+||+|+||+.|+|+|||.+||++|+++ |+||+|+|+|
T Consensus 14 ~glgdl~g~l~-~--yL~~-~v~~i~LlPffps~s--D~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~kvmlDlV~N 82 (470)
T TIGR03852 14 KNLKELNKVLE-N--YFKD-AVGGVHLLPFFPSTG--DRGFAPMDYTEVDPAFGDWSDVEALSEK-----YYLMFDFMIN 82 (470)
T ss_pred CChhhHHHHHH-H--HHHH-hCCEEEECCCCcCCC--CCCcCchhhceeCcccCCHHHHHHHHHh-----hhHHhhhccc
Confidence 56788888884 4 9999 799999999998874 6899999999999999999999999997 8999999999
Q ss_pred cccCCCcccCcCCCC----CCCCCcccC--------C-----------C------------C-CcccC-----CCCCCCC
Q 004253 411 HASNNVLDGLNMFDG----TDGHYFHSG--------S-----------R------------G-YHWMW-----DSRLFNY 449 (765)
Q Consensus 411 H~~~~~~~~~~~f~g----~~~~yf~~~--------~-----------~------------g-~~~~w-----~~~~ln~ 449 (765)
|+|..|.+......+ .-..||... + + + ..+.| +.++||+
T Consensus 83 HtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~ 162 (470)
T TIGR03852 83 HISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDV 162 (470)
T ss_pred ccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCC
Confidence 999988433221111 111233200 0 0 0 01122 2478999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccC--ChhHHHHHHHHHHHHhhcCCCc
Q 004253 450 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFAT--DVDAVVYLMLVNDMIHGLYPEA 527 (765)
Q Consensus 450 ~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~--d~~a~~~l~~~~~~v~~~~p~~ 527 (765)
.||+|+++|.++++||++ .||||||+|++.++.+.. | ..+. ..++.++|+++++.+ ..|++
T Consensus 163 ~np~v~e~i~~il~fwl~-~GvdgfRLDAv~~l~K~~-G-------------t~c~~l~pet~~~l~~~r~~~--~~~~~ 225 (470)
T TIGR03852 163 TSETTKRFIRDNLENLAE-HGASIIRLDAFAYAVKKL-G-------------TNDFFVEPEIWELLDEVRDIL--APTGA 225 (470)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCCEEEEecchhhcccC-C-------------CCcccCChhHHHHHHHHHHHh--ccCCC
Confidence 999999999999999997 899999999999986542 1 1121 246789999999988 44799
Q ss_pred eEEeeccCCCCccccccccCCcccchhhhHHHHHHHHHHHhhhhhhhhhhhhHhhhccccccccceecccCccccccCcc
Q 004253 528 VSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDK 607 (765)
Q Consensus 528 i~iaE~~~~~p~~~~~~~~gg~gfD~~l~~~~~d~~~~~lk~~~~~~~~~~~~~~l~~~~~~~~~v~f~enHD~~r~g~k 607 (765)
++|+|.+........--..+.+.|+|.+...+...+...-......|... +. ..+.+|+.|||.-.+.+
T Consensus 226 ~ll~E~~~~~~~~~~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~~-----~p-----~~~~nfL~sHDgigl~~- 294 (470)
T TIGR03852 226 EILPEIHEHYTIQFKIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLRK-----SP-----MKQFTTLDTHDGIGVVD- 294 (470)
T ss_pred EEEeHhhhhcccccccccceeEEccCccchhhHHHhhccCHHHHHHHHHh-----Cc-----ccceEEeecCCCCCCcc-
Confidence 99999974332211101234567888776554322221111223344432 22 23469999999965411
Q ss_pred chhhhccCh---hhHhhhh-------c---C------------CCCCccchhhHHHHHHHHHHHHhcCCcceeecccccc
Q 004253 608 TIAFWLMDK---DMYDFMA-------L---D------------RPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEF 662 (765)
Q Consensus 608 t~~~~~~~~---~~~~~~~-------~---~------------~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~ 662 (765)
+.-.+.+. .+...|. . . +.--+......++..++++|+|++||+|.| |||.|+
T Consensus 295 -~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpGiP~i-Yy~~ll 372 (470)
T TIGR03852 295 -VKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPGIPQV-YYVGLL 372 (470)
T ss_pred -ccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCCCceE-Eechhh
Confidence 11011111 1222221 0 0 000011122346667889999999999999 999999
Q ss_pred cCCCCCCCCCCCCCCCCCCcCCCCCCCCcCCccccCCCCccccccccHHHHHHHHHHHHHHcCCCCC-CCeE--------
Q 004253 663 GHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTS-EHQY-------- 733 (765)
Q Consensus 663 G~~e~~d~p~~~~~dp~~~~~~gn~~s~~~~R~~~~w~~~~~~~~~~l~~f~r~Li~lRk~~~~L~~-~~~~-------- 733 (765)
|+.+....+. -.+..++-+|..++..+......+.+..=..+||++|+++|+++. +...
T Consensus 373 g~~nD~~~~~------------rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~~~~~~~~~ 440 (470)
T TIGR03852 373 AGKNDIELLE------------ETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSIDIETPSENQ 440 (470)
T ss_pred cCCchHHHHH------------hcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceEecCCCCcE
Confidence 9977433332 122344567777776554322222233334449999999999965 3321
Q ss_pred --EEEEcC--CCEEEEEEecCCcccc
Q 004253 734 --VSRKDQ--GDRGGMMTDLIPSWYM 755 (765)
Q Consensus 734 --i~~~~~--~~~vlvf~r~sp~~~~ 755 (765)
++|... +.+++++.|++...+.
T Consensus 441 ~~~~r~~~~~~~~~~~~~n~~~~~~~ 466 (470)
T TIGR03852 441 IEIVRTNKDGGNKAILTANLKTKTFT 466 (470)
T ss_pred EEEEEEcCCCCceEEEEEecCCCcEe
Confidence 122222 5567777777766543
No 32
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=5e-36 Score=337.29 Aligned_cols=347 Identities=14% Similarity=0.111 Sum_probs=228.0
Q ss_pred CCHHhhHhhhhh-HHHHcCCCEEEECCcccC-CCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 334 NTYANFRDDVLP-RIKRLGYNAVQIMAVQEH-SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 334 Gt~~~~~~~~L~-yLk~LGvt~I~L~Pi~e~-~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
|+++|++ ++|| ||++| |++|||||+++. +. ...||+|+||+.|+|+|||.+||++|++ ||+||+|+|+||
T Consensus 17 GdL~gl~-~kLd~yL~~l-v~~vhllPff~psp~-sD~GYdv~DY~~VDP~fGt~eDf~~L~~-----giklmlDlV~NH 88 (495)
T PRK13840 17 GGLKSLT-ALLDGRLDGL-FGGVHILPFFYPIDG-ADAGFDPIDHTKVDPRLGDWDDVKALGK-----THDIMADLIVNH 88 (495)
T ss_pred CCHhHHH-HHHHHHHHHH-hCeEEECCCccCCCC-CCCCCCCcChhhcCcccCCHHHHHHHHh-----CCeEEEEECCCc
Confidence 8999999 6999 59999 999999999953 44 4689999999999999999999999995 999999999999
Q ss_pred ccCCCcccCcCC-CCCC---CCCccc--------------------CCC-----------CCcccC-----CCCCCCCCC
Q 004253 412 ASNNVLDGLNMF-DGTD---GHYFHS--------------------GSR-----------GYHWMW-----DSRLFNYGS 451 (765)
Q Consensus 412 ~~~~~~~~~~~f-~g~~---~~yf~~--------------------~~~-----------g~~~~w-----~~~~ln~~~ 451 (765)
+|..|.+..... .+.+ ..||.. .+. ...+.| +.++||+.|
T Consensus 89 tS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~N 168 (495)
T PRK13840 89 MSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHS 168 (495)
T ss_pred CCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCC
Confidence 999885422110 1111 112210 000 001122 238999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccC-ChhHHHHHHHHHHHHhhcCCCceEE
Q 004253 452 WEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFAT-DVDAVVYLMLVNDMIHGLYPEAVSI 530 (765)
Q Consensus 452 ~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~-d~~a~~~l~~~~~~v~~~~p~~i~i 530 (765)
|+|+++|+++++||++ .||||||+|++.++.+.. |. .+. ..+..+||++++..++.. +..+|
T Consensus 169 P~V~~~i~~il~fwl~-~GVDgfRLDAv~~l~K~~-gt-------------~c~~~pe~~~~l~~lr~~~~~~--~~~ll 231 (495)
T PRK13840 169 AAGWEYLMSILDRFAA-SHVTLIRLDAAGYAIKKA-GT-------------SCFMIPETFEFIDRLAKEARAR--GMEVL 231 (495)
T ss_pred HHHHHHHHHHHHHHHH-CCCCEEEEechhhhhcCC-CC-------------CcCCChHHHHHHHHHHHHhhhc--CCEEE
Confidence 9999999999999998 899999999998886541 11 011 245678999999999775 56789
Q ss_pred eeccCCCCccccccccCCcccchhhhHHHHHHHHHHHhhhhhhhhhhhhHhhhccccccccceecccCccccccCccchh
Q 004253 531 GEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIA 610 (765)
Q Consensus 531 aE~~~~~p~~~~~~~~gg~gfD~~l~~~~~d~~~~~lk~~~~~~~~~~~~~~l~~~~~~~~~v~f~enHD~~r~g~kt~~ 610 (765)
+|.++........-....+.|+|.+...+...+...-......|... . +.+|++|+.|||.-.+-|-+..
T Consensus 232 ~Ei~~y~~~~~~~~~e~~~vYnF~Lp~ll~~aL~~~~~~~L~~~l~~--------~--p~~~~n~L~~HDgIgl~d~~~~ 301 (495)
T PRK13840 232 VEIHSYYKTQIEIAKKVDRVYDFALPPLILHTLFTGDVEALAHWLEI--------R--PRNAVTVLDTHDGIGIIDVGAD 301 (495)
T ss_pred EeCccccCccccccccccEEecchhhHHHHHHHHhCCchHHHHHHHh--------C--CCccEEeeecCCCCCccccccc
Confidence 99875432211111234456777765544322211000112223322 1 4566899999999765111000
Q ss_pred ----hhccChh----hHhhh---hcC----CCC----C--c---------cchhhHHHHHHHHHHHHhcCCcceeecccc
Q 004253 611 ----FWLMDKD----MYDFM---ALD----RPS----T--P---------RIDRGIALHKMIRLVTMGLGGEAYLNFMGN 660 (765)
Q Consensus 611 ----~~~~~~~----~~~~~---~~~----~~~----~--~---------~~~~g~~l~k~a~lllltlpG~P~l~yyGd 660 (765)
--+++.+ +...+ +.. ..+ + | .....-++..++++++|++||+|.| |||+
T Consensus 302 ~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~~~GiP~i-Y~~~ 380 (495)
T PRK13840 302 DRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFFAPGIPQV-YYVG 380 (495)
T ss_pred ccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHcCCCccee-eech
Confidence 0011111 11111 000 000 0 0 0011124567889999999999999 9999
Q ss_pred cccCCCCCCCCCCCCCCCCCCcCCCCCCCCcCCccccCCCCccccccccHHHHHHHHHHHHHHcCCCC
Q 004253 661 EFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMT 728 (765)
Q Consensus 661 E~G~~e~~d~p~~~~~dp~~~~~~gn~~s~~~~R~~~~w~~~~~~~~~~l~~f~r~Li~lRk~~~~L~ 728 (765)
|+|...-.+.- .-.+.+++-+|..|+|.+....-.+.+++-.++|+++|+++|+|.
T Consensus 381 ll~~~ND~~~~------------~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF~ 436 (495)
T PRK13840 381 LLAGPNDMELL------------ARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAFD 436 (495)
T ss_pred hhccCccHHHH------------HhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 99986521111 124557888999999987665455568888999999999999984
No 33
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-35 Score=339.53 Aligned_cols=394 Identities=21% Similarity=0.267 Sum_probs=235.8
Q ss_pred ceEEEeecCCCCCC--------CCCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHH
Q 004253 317 LRIYEAHVGMSSTE--------PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDD 388 (765)
Q Consensus 317 ~vIYE~hv~~~s~~--------~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~e 388 (765)
.+||++.++.|... .+.|+++|++ ++||||++|||++|||+||++.+ ...+||++.||+.+++.|||.+|
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~-~~LdYl~~LGv~aiwl~Pi~~s~-~~~~gY~~~Dy~~id~~~Gt~~d 78 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGIT-EKLDYLKELGVDAIWLSPIFESP-QADHGYDVSDYTKVDPHFGTEED 78 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHH-HhhhHHHHhCCCEEEeCCCCCCC-ccCCCccccchhhcCcccCCHHH
Confidence 47999999988544 3469999999 69999999999999999999986 35799999999999999999999
Q ss_pred HHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCC----CCCcc---------------cCCCCCcccC-------
Q 004253 389 LKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTD----GHYFH---------------SGSRGYHWMW------- 442 (765)
Q Consensus 389 fk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~----~~yf~---------------~~~~g~~~~w------- 442 (765)
|++||++||++||+||||+|+||++..+.+......... ..||. ....+..|.+
T Consensus 79 ~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (505)
T COG0366 79 FKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYY 158 (505)
T ss_pred HHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceE
Confidence 999999999999999999999999998742211110000 02221 1111222221
Q ss_pred ------CCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChh-HHHHHHH
Q 004253 443 ------DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLML 515 (765)
Q Consensus 443 ------~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-a~~~l~~ 515 (765)
..++||+.|++|++.+++.++||++ +||||||+|+++++.... +.. .......+.+ -.++++.
T Consensus 159 ~~~~~~~~~dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~ 228 (505)
T COG0366 159 LHLFSSEQPDLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISKDF-GLP--------PSEENLTFLEEIHEYLRE 228 (505)
T ss_pred EEecCCCCCCcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhcccc-CCC--------CcccccccHHHHHHHHHH
Confidence 1257999999999999999999999 999999999999985421 100 0000001111 1133344
Q ss_pred HHHHHhhcCCCceEEeeccCCCCccccccccCC------cccchhhhHHHH----HHHHHHHhhhhhhhhhhhhHhhhcc
Q 004253 516 VNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGG------VGFDYRLQMAIA----DKWIELLKKRDEDWKMGAIVHTMTN 585 (765)
Q Consensus 516 ~~~~v~~~~p~~i~iaE~~~~~p~~~~~~~~gg------~gfD~~l~~~~~----d~~~~~lk~~~~~~~~~~~~~~l~~ 585 (765)
.+..+..........++........+... ... +.|++....... ......++.....|... ....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 303 (505)
T COG0366 229 ENPDVLIYGEAITDVGEAPGAVKEDFADN-TSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPLA----VNLN 303 (505)
T ss_pred HHHHHHhcCcceeeeeccccccchhhhhc-cchhhhhHhhccccccccccccccCcccHHHHHHHHHHHHhh----hccc
Confidence 44333332223334444333222222211 000 111211100000 00011111111111111 0112
Q ss_pred ccccccceecccCccccccCccchhhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhcCCcceeecccccccCC
Q 004253 586 RRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHP 665 (765)
Q Consensus 586 ~~~~~~~v~f~enHD~~r~g~kt~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G~~ 665 (765)
..|. ..|..|||+.|+-+.. ..+. ....+..+++..++++++|+|+| |||+|+|+.
T Consensus 304 ~~~~---~~~~~~hD~~r~~~~~----~~~~----------------~~~~~~~~~~~~~~~~~~g~p~i-y~G~e~g~~ 359 (505)
T COG0366 304 DGWN---NLFLSNHDQPRLLSRF----GDDV----------------GGRDASAKLLAALLFLLPGTPFI-YYGDELGLT 359 (505)
T ss_pred cCch---hhhhhhcCccceeeec----cCCc----------------cchHHHHHHHHHHHHhCCCCcEE-ecccccCCC
Confidence 2333 3478999999874421 1110 01245667888899999999999 999999998
Q ss_pred CCCCCCCCCCCCCCCCcCCCCCCCCcCCccccCCC---------------------------Ccc--ccccccHHHHHHH
Q 004253 666 EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLG---------------------------DAD--YLRYRGMQEFDRA 716 (765)
Q Consensus 666 e~~d~p~~~~~dp~~~~~~gn~~s~~~~R~~~~w~---------------------------~~~--~~~~~~l~~f~r~ 716 (765)
...+.+.. ...+.. .......+++.||.+|.|. ... ......++.+++.
T Consensus 360 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~ 437 (505)
T COG0366 360 NFKDPPIK-YYDDVE-LDSIILLSRDGCRTPMPWDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRR 437 (505)
T ss_pred CCCCcchh-hhchhh-hhhhhhccccCCCCCcCCCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHHH
Confidence 75332211 111100 0112345677888888887 111 1113478999999
Q ss_pred HHHHHHHc-CCCCCCCeE----------E--EEEcCCCEEEEEEecCCcc
Q 004253 717 MQHLEEKY-GFMTSEHQY----------V--SRKDQGDRGGMMTDLIPSW 753 (765)
Q Consensus 717 Li~lRk~~-~~L~~~~~~----------i--~~~~~~~~vlvf~r~sp~~ 753 (765)
|+++|+.+ ..+..+..+ + .+...+..++++.|++...
T Consensus 438 l~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ 487 (505)
T COG0366 438 LIALRKQHSALLANGEDFVLLADDDPSLLAFLRESGGETLLVVNNLSEEE 487 (505)
T ss_pred HHHHHHhhhhhhcCcccceecCCCCceEEEEecccCCceEEEEEcCCCcc
Confidence 99999888 444433211 1 2233444588888888753
No 34
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=2.5e-32 Score=308.21 Aligned_cols=409 Identities=12% Similarity=0.092 Sum_probs=258.0
Q ss_pred CceEEEeecCCCCCCCCCCCHHhhHh-hhhhHHHHcCCCEEEECCcccC---------CCCCCCCCccccccCCCCCCCC
Q 004253 316 SLRIYEAHVGMSSTEPIINTYANFRD-DVLPRIKRLGYNAVQIMAVQEH---------SYYASFGYHVTNFFAPSSRCGT 385 (765)
Q Consensus 316 ~~vIYE~hv~~~s~~~~~Gt~~~~~~-~~L~yLk~LGvt~I~L~Pi~e~---------~~~~~~GY~~~~~~a~~~~~Gt 385 (765)
..+=+.+++.+.-..++..-+..+.+ ...+||++|||++|||+|++++ |.. ..||+++| |.|+++|||
T Consensus 51 a~~W~~~~P~s~i~~~~~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~-D~gyDi~d-~~Idp~~GT 128 (688)
T TIGR02455 51 ASVWFTAYPAAIIAPEGCSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSI-DGNFDRIS-FDIDPLLGS 128 (688)
T ss_pred cCeeEEecchhhcCCCCCcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCCCCC-CCCCCccc-CccCcccCC
Confidence 34556667766654444333344433 5789999999999999999998 542 47999999 599999999
Q ss_pred HHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCC-CCCCCCCc---------------------------------
Q 004253 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF-DGTDGHYF--------------------------------- 431 (765)
Q Consensus 386 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f-~g~~~~yf--------------------------------- 431 (765)
.+||++||++||++||+||+|+|+||||..|.-.+..- ++.-+.||
T Consensus 129 ~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghdF~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L 208 (688)
T TIGR02455 129 EEELIQLSRMAAAHNAITIDDIIPAHTGKGADFRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDEL 208 (688)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcchHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHH
Confidence 99999999999999999999999999999873111000 11112222
Q ss_pred ----------------ccCCCCCcccCC----------------------CCCCCCCCHH--HHHHHH-HHHHHHHHHcC
Q 004253 432 ----------------HSGSRGYHWMWD----------------------SRLFNYGSWE--VLRFLL-SNARWWLEEYK 470 (765)
Q Consensus 432 ----------------~~~~~g~~~~w~----------------------~~~ln~~~~~--v~~~i~-~~l~~W~~e~g 470 (765)
..+.....|.|+ .++|||.||. |++.|+ +++++|++ .|
T Consensus 209 ~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~-lG 287 (688)
T TIGR02455 209 KAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDC-LG 287 (688)
T ss_pred hhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHH-hc
Confidence 111112244444 3789999999 999999 89999999 99
Q ss_pred CcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHh--hcCCCceEEeeccCCCCccccccccCC
Q 004253 471 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIH--GLYPEAVSIGEDVSGMPTFCIPVQDGG 548 (765)
Q Consensus 471 vDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~--~~~p~~i~iaE~~~~~p~~~~~~~~gg 548 (765)
+||||+|++..|.... |. .+ ....++..+++.+++.+. ..+++.++++|.. -.+...+.+..++
T Consensus 288 ~~GfRLDAvpfLg~e~-~~----~~--------~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~n-l~~~d~~~~~g~~ 353 (688)
T TIGR02455 288 ARGLRLDANGFLGVER-RA----EG--------TAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELN-LTIDDIAAMSHGG 353 (688)
T ss_pred cccceeccccceeeec-CC----CC--------CCCCccCHHHHHHHHHHHHhhhcCCeeEeeecc-CCHHHHHHHhCCC
Confidence 9999999999885331 11 00 011234578899999998 7889999999986 4566666666553
Q ss_pred --cccchhhhHHHHHHHHHHHhhhhhhhhhhhhHhhhccccccccceecccCccccccCccchhhh--------------
Q 004253 549 --VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFW-------------- 612 (765)
Q Consensus 549 --~gfD~~l~~~~~d~~~~~lk~~~~~~~~~~~~~~l~~~~~~~~~v~f~enHD~~r~g~kt~~~~-------------- 612 (765)
+.|||...-.+. ..+...+......-+..++...--..+.+.|+.|||+..+. -+.+|
T Consensus 354 ~dl~~dF~t~p~~~----~AL~tgda~pLr~~L~~~~~~gid~~~~~~~LrNHDELtle--lvh~~~~~~~~~~~~~g~~ 427 (688)
T TIGR02455 354 ADLSYDFITRPAYH----HALLTGDTEFLRLMLKEMHAFGIDPASLIHALQNHDELTLE--LVHFWTLHAHDHYHYKGQT 427 (688)
T ss_pred cceeecccccHHHH----HHHHcCCHHHHHHHHHhhhcCCCCchhhhhhccCccccchh--hhhhccccccccccccccc
Confidence 345555433222 22222222111111111111110123447899999996542 01111
Q ss_pred --------ccChhhHhhhhcCC---------------------------CCCccchhhHHHHHHHHHHHHh----cCCcc
Q 004253 613 --------LMDKDMYDFMALDR---------------------------PSTPRIDRGIALHKMIRLVTMG----LGGEA 653 (765)
Q Consensus 613 --------~~~~~~~~~~~~~~---------------------------~~~~~~~~g~~l~k~a~llllt----lpG~P 653 (765)
-+-.+||..++... ...|..+...+..+++.+++++ +||+|
T Consensus 428 ~~g~~l~e~~R~~m~~~~a~d~~p~~m~~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG~p 507 (688)
T TIGR02455 428 LPGGHLREHIREEIYERLSGEHAPYNLKFVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPGVF 507 (688)
T ss_pred CCccccCHHHHHHHHHHhcCCCccccceEEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCCce
Confidence 11224554443321 2334556667778889999999 99999
Q ss_pred eeeccc--------------ccccCCCCCCCCCCCCCC-----CCCC----cCCCCCCCCcCCccccCCCCccccccccH
Q 004253 654 YLNFMG--------------NEFGHPEWIDFPRGDQRL-----PNGQ----FVPGNNFSYDKCRRRFDLGDADYLRYRGM 710 (765)
Q Consensus 654 ~l~yyG--------------dE~G~~e~~d~p~~~~~d-----p~~~----~~~gn~~s~~~~R~~~~w~~~~~~~~~~l 710 (765)
+| ||| +|+||.+..-.++. .++ |... ..+- ++..+.=...+.....++
T Consensus 508 ~L-~ygdl~GalpL~~~~v~deigmGD~~wl~rg-gfs~~~~~p~~~~s~~~lP~-------~~~~Ygnv~~Ql~dp~S~ 578 (688)
T TIGR02455 508 AL-SGWDLVGALPLAAEAVAELMGDGDTRWIHRG-GYDLADLAPEAEASAEGLPK-------ARALYGSLAEQLDEPDSF 578 (688)
T ss_pred Ee-ecccccccccccccchhhhhccCccccccCC-CcccCCCCchhhhccCCCCC-------CcCCCCCHHHHhhCCccH
Confidence 99 999 99999765444432 111 1110 0011 111111011122345689
Q ss_pred HHHHHHHHHHHHHcCCCCCCC---------eE--EEEE--cCCCEEEEEEecCCccccc
Q 004253 711 QEFDRAMQHLEEKYGFMTSEH---------QY--VSRK--DQGDRGGMMTDLIPSWYMR 756 (765)
Q Consensus 711 ~~f~r~Li~lRk~~~~L~~~~---------~~--i~~~--~~~~~vlvf~r~sp~~~~~ 756 (765)
.++.++|++.||.++++..+. .. +.+. .++..+|++.||+...+..
T Consensus 579 l~~l~~il~vR~~~~i~~~~~~~~~~~~~~gvLa~v~~l~~~~~~~L~v~Nfs~~~~~~ 637 (688)
T TIGR02455 579 ACKLKKILAVRQAYDIAASKQILIPDVQAPGLLVMVHELPAGKGIQITALNFGADAIAE 637 (688)
T ss_pred HHHHHHHHHHHHhCCcccCceeeecCCCCCcEEEEEEEcCCCCceEEEeeccCCCCeee
Confidence 999999999999999886554 11 1222 2347799999998866543
No 35
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.98 E-value=2.8e-31 Score=306.04 Aligned_cols=166 Identities=28% Similarity=0.397 Sum_probs=133.4
Q ss_pred CCceEEEeecCCCCC--CCCCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHH
Q 004253 315 KSLRIYEAHVGMSST--EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSL 392 (765)
Q Consensus 315 ~~~vIYE~hv~~~s~--~~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~L 392 (765)
+..+|||+.+++|.. ..+.|+++|++ .+|+||++||+|+|||+||++.+.. .+||++.||+.++|+|||.+||++|
T Consensus 16 ~~~~~YQI~~~sF~~s~~d~~G~~~GI~-~kldyi~~lG~taiWisP~~~s~~~-~~GY~~~d~~~l~p~fGt~edf~~L 93 (545)
T KOG0471|consen 16 KTESIYQIYPDSFADSDGDGVGDLKGIT-SKLDYIKELGFTAIWLSPFTKSSKP-DFGYDASDLEQLRPRFGTEEDFKEL 93 (545)
T ss_pred hcCceeEEeccccccccCCCccccccch-hhhhHHHhcCCceEEeCCCcCCCHH-HhccCccchhhhcccccHHHHHHHH
Confidence 566899999999964 45679999999 6999999999999999999998753 7999999999999999999999999
Q ss_pred HHHHhhcCCEEEEeeccccccCCCcccCcC-------------CCCCC--------CCCcccCCCCCcccC---------
Q 004253 393 IDKAHELGLLVLMDIVHSHASNNVLDGLNM-------------FDGTD--------GHYFHSGSRGYHWMW--------- 442 (765)
Q Consensus 393 V~~aH~~GI~VIlDvV~NH~~~~~~~~~~~-------------f~g~~--------~~yf~~~~~g~~~~w--------- 442 (765)
|+++|++||++|+|+|+||++..+.+.... +++.. +..+.....+..+.|
T Consensus 94 i~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l 173 (545)
T KOG0471|consen 94 ILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYL 173 (545)
T ss_pred HHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceec
Confidence 999999999999999999999765432211 11110 111111112222222
Q ss_pred -----CCCCCCCCCHHHHHHHHHHHH-HHHHHcCCcEEEeccccccc
Q 004253 443 -----DSRLFNYGSWEVLRFLLSNAR-WWLEEYKFDGFRFDGVTSMM 483 (765)
Q Consensus 443 -----~~~~ln~~~~~v~~~i~~~l~-~W~~e~gvDGFRfD~v~~m~ 483 (765)
..+++|+++|+|++.|.++++ +|++ +||||||+|+++++.
T Consensus 174 ~~~~~~~pDln~~n~~V~~~~~~~l~~~~~~-~gvdGfRiD~v~~~~ 219 (545)
T KOG0471|consen 174 GQFAVLQPDLNYENPDVRKAIKEWLRDFWLE-KGVDGFRIDAVKGYA 219 (545)
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHhh-cCCCeEEEEcccccc
Confidence 237899999999999999999 7777 999999999999874
No 36
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.96 E-value=1.5e-27 Score=280.18 Aligned_cols=81 Identities=23% Similarity=0.377 Sum_probs=77.4
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecccccc
Q 004253 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (765)
Q Consensus 334 Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~ 413 (765)
+||.+++ ++||||++||||+|||+||+++....+|||+++||+.+++.|||.++|++||++||++||+||||+|+||++
T Consensus 13 ~tf~~~~-~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 13 FTFDDAA-ALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CCHHHHH-HhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 8999999 699999999999999999999866667999999999999999999999999999999999999999999999
Q ss_pred CC
Q 004253 414 NN 415 (765)
Q Consensus 414 ~~ 415 (765)
.+
T Consensus 92 ~~ 93 (825)
T TIGR02401 92 VH 93 (825)
T ss_pred cc
Confidence 76
No 37
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.90 E-value=3.5e-22 Score=236.06 Aligned_cols=82 Identities=18% Similarity=0.319 Sum_probs=77.7
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecccccc
Q 004253 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (765)
Q Consensus 334 Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~ 413 (765)
++|.+++ ++||||++||||+|||+||++.....+|||++.||+.|++.||+.++|++||++||++||+||||+|+||++
T Consensus 17 ~tf~~~~-~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 17 FTFDDAA-ELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CCHHHHH-HHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 7999999 699999999999999999999865668999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 004253 414 NNV 416 (765)
Q Consensus 414 ~~~ 416 (765)
.++
T Consensus 96 ~~~ 98 (879)
T PRK14511 96 VGG 98 (879)
T ss_pred CcC
Confidence 754
No 38
>smart00642 Aamy Alpha-amylase domain.
Probab=99.86 E-value=1e-21 Score=193.94 Aligned_cols=92 Identities=25% Similarity=0.368 Sum_probs=82.9
Q ss_pred eecCCCC--CCCCCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCC--CCCCCccccccCCCCCCCCHHHHHHHHHHHh
Q 004253 322 AHVGMSS--TEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYY--ASFGYHVTNFFAPSSRCGTPDDLKSLIDKAH 397 (765)
Q Consensus 322 ~hv~~~s--~~~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~--~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH 397 (765)
+.++.|. ...+.|+|++++ ++|+||++||||+|||+||++++.. .+|||++.||++++++|||++||++||++||
T Consensus 2 i~~~~F~~~~~~~~G~~~gi~-~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h 80 (166)
T smart00642 2 IYPDRFADGNGDGGGDLQGII-EKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAH 80 (166)
T ss_pred eeeccccCCCCCCCcCHHHHH-HHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHH
Confidence 4566664 334579999999 6999999999999999999998853 6799999999999999999999999999999
Q ss_pred hcCCEEEEeeccccccC
Q 004253 398 ELGLLVLMDIVHSHASN 414 (765)
Q Consensus 398 ~~GI~VIlDvV~NH~~~ 414 (765)
++||+||||+|+||++.
T Consensus 81 ~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 81 ARGIKVILDVVINHTSD 97 (166)
T ss_pred HCCCEEEEEECCCCCCC
Confidence 99999999999999976
No 39
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.81 E-value=2.2e-18 Score=192.09 Aligned_cols=306 Identities=25% Similarity=0.348 Sum_probs=200.7
Q ss_pred ccCCcEEeCCc-EEEEEecCCcC-------eEEEEe-------ecCCCC------CCccCCccCCCceEEEEeCCCCCCC
Q 004253 194 EKFGFIRSDTG-ITYREWAPGAK-------SASLIG-------DFNNWN------PNADIMTQNEFGVWEIFLPNNADGS 252 (765)
Q Consensus 194 ~~lG~~~~~~g-v~FrvWAP~A~-------~V~L~g-------dFN~w~------~~~~~m~~~~~GvW~i~lp~~~~G~ 252 (765)
.+||+|+..+| |.|-.|.|.-. .|+|.. ||..-+ +...++.+.+.-+|-+ +.|...|.
T Consensus 26 ~rLGAh~~~dGlteiGFWtPel~~~~i~~~~i~LEVftP~~~ID~~~~~q~v~f~R~~~~L~~qgey~WgV-v~GlraGt 104 (811)
T PF14872_consen 26 TRLGAHYRPDGLTEIGFWTPELAGDVIQPRDIYLEVFTPLEPIDPRAPEQTVRFRRDRLPLERQGEYHWGV-VAGLRAGT 104 (811)
T ss_pred HHhcCccCCCCceEEeeccchhhhhhccccceEEEEecCCCCCCCcCCCceeEEEEEEEeeccccceeeeh-hhccCCCC
Confidence 47999999988 89999999654 788763 332211 1123666666667765 67766665
Q ss_pred CCCCCCCEEEEEeeCCCCc----cccCCccceeeccCCCCCCCCcEEeCCCcc------ccccccC-------CCCCCCC
Q 004253 253 PPIPHGSRVKIHMDTPSGI----KDSIPAWIKFSVQAPGEIPYNGIYYDPPEE------EKYVFQH-------PQPKKPK 315 (765)
Q Consensus 253 ~~~~~g~~y~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~------~~~~~~~-------~~~~~~~ 315 (765)
. -.-|+.|..+-....+. .+.+....+|.+..|.+ +||.+.. ..|--+. ..++.+.
T Consensus 105 r-~q~GsfYwLry~d~~~~~~~I~DpLaySlPyGvfaPAE------lYDl~~lq~~RaD~~Yf~~~~a~~~~~~~~rv~~ 177 (811)
T PF14872_consen 105 R-DQAGSFYWLRYRDQDGEVQIIRDPLAYSLPYGVFAPAE------LYDLERLQRRRADLDYFEATGAADPSDGIPRVPA 177 (811)
T ss_pred c-ccccceEEEEEccCCCCeEEecccccccCcccccChHH------hhchHhHhhhhhhHHHHHhhccccCCCCCcccCC
Confidence 4 24488888775544343 23333334555655543 3444321 1111011 1134457
Q ss_pred CceEEEeecCCCCCCCCCCCHHhhHhhhhhHHHH---------------cCCCEEEECCcccC-----------------
Q 004253 316 SLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKR---------------LGYNAVQIMAVQEH----------------- 363 (765)
Q Consensus 316 ~~vIYE~hv~~~s~~~~~Gt~~~~~~~~L~yLk~---------------LGvt~I~L~Pi~e~----------------- 363 (765)
+..|-|+||+..|++ ||+.|+++ .-..|.+ .||+|||||||-..
T Consensus 178 P~nILQiHv~TAsp~---GtlaGLT~-iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~~ 253 (811)
T PF14872_consen 178 PRNILQIHVGTASPE---GTLAGLTR-IYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSIR 253 (811)
T ss_pred CceeEEEecCCCCCC---cchHHHHH-HHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeeec
Confidence 889999999999877 89999983 4444433 79999999998542
Q ss_pred --------------------------CCCCCCCCcccc--ccCCCCCC---CCHHHHHHHHHHHhh---cCCEEEEeecc
Q 004253 364 --------------------------SYYASFGYHVTN--FFAPSSRC---GTPDDLKSLIDKAHE---LGLLVLMDIVH 409 (765)
Q Consensus 364 --------------------------~~~~~~GY~~~~--~~a~~~~~---Gt~~efk~LV~~aH~---~GI~VIlDvV~ 409 (765)
|...+|||++.= .-+++|.. +.|+||-.||.++|. ..|+||+|+||
T Consensus 254 ~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVy 333 (811)
T PF14872_consen 254 PEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLVY 333 (811)
T ss_pred ccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeec
Confidence 112379999743 33444432 338999999999996 78999999999
Q ss_pred ccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCc
Q 004253 410 SHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGL 489 (765)
Q Consensus 410 NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~ 489 (765)
.|+-+...+-++. .|+. ++. ++ ..++|+.+|.||..+++.-+.=++ +|+||+|+|++.-.-+.
T Consensus 334 GHADNQ~~~LLn~------~flk-GPn----MY-GQdlnhq~P~VRAILLEmQRRK~n-~GaDGIRVDGgQDFk~f---- 396 (811)
T PF14872_consen 334 GHADNQALDLLNR------RFLK-GPN----MY-GQDLNHQNPVVRAILLEMQRRKIN-TGADGIRVDGGQDFKFF---- 396 (811)
T ss_pred ccccchhhHhhhh------hhcc-CCc----cc-cccccccChHHHHHHHHHHHhhcc-cCCceeEecccccceee----
Confidence 9997765433321 2221 111 11 257999999999999999999888 99999999998755322
Q ss_pred cccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCC---ceEEeeccCCCC
Q 004253 490 QVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPE---AVSIGEDVSGMP 538 (765)
Q Consensus 490 ~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~---~i~iaE~~~~~p 538 (765)
+..-+.....+ .||.++.+++.++.+. .++|-|+--.+|
T Consensus 397 --------nplt~~ve~DD--~YL~~M~dvvQ~I~~~~r~~f~IfEDGRPWP 438 (811)
T PF14872_consen 397 --------NPLTGRVEYDD--AYLLAMSDVVQEIGGARRLPFTIFEDGRPWP 438 (811)
T ss_pred --------cccccccccch--HHHHHHHHHHhhccccceeEEEEecCCCcCC
Confidence 22222222222 5999999999987653 578888765555
No 40
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1.3e-18 Score=181.55 Aligned_cols=282 Identities=17% Similarity=0.231 Sum_probs=174.7
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCcccCCCC----CC-C-CCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeec
Q 004253 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYY----AS-F-GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 408 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~----~~-~-GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV 408 (765)
.+..++.|+-..|.--|+-+||++|+.|+... .. | .|+|.+ |.++.|-|..+||+.||..|.+-|+++++|+|
T Consensus 38 KW~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~tRSGNE~eF~dMV~RCN~VGVRiyVDvv 116 (504)
T KOG2212|consen 38 KWVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDEFRDMVTRCNNVGVRIYVDAV 116 (504)
T ss_pred ehHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEeeccCCCHHHHHHHHHHhhccceEEEehhh
Confidence 46677777888899999999999999997321 12 3 599999 48999999999999999999999999999999
Q ss_pred cccccCCCccc-------C------cCCCCCCC--CCcccCC-C---CCcccC------------CCCCCCCCCHHHHHH
Q 004253 409 HSHASNNVLDG-------L------NMFDGTDG--HYFHSGS-R---GYHWMW------------DSRLFNYGSWEVLRF 457 (765)
Q Consensus 409 ~NH~~~~~~~~-------~------~~f~g~~~--~yf~~~~-~---g~~~~w------------~~~~ln~~~~~v~~~ 457 (765)
+||++.+..+| . ..|.|-+. .-|+... . ..-..| +..+||-++..||..
T Consensus 117 ~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~Nda~~V~~C~LVGL~DL~Q~s~~Vr~K 196 (504)
T KOG2212|consen 117 INHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLVGLLDLAQGSDYVRSK 196 (504)
T ss_pred hhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCccccccccchhhhhcceEeecchhhhcchHHHHH
Confidence 99998643221 1 12333211 0122211 0 001112 335789999999999
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHH-HHHHHHHHHHhhcCCCceEEeeccCC
Q 004253 458 LLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAV-VYLMLVNDMIHGLYPEAVSIGEDVSG 536 (765)
Q Consensus 458 i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~-~~l~~~~~~v~~~~p~~i~iaE~~~~ 536 (765)
|++.|.+.++ .||-|||.|+++||.-. |+..+ .-++.+|.-........+++-|...-
T Consensus 197 ive~L~hLid-lGVAGFRvDAsKHMwp~--------------------Di~~I~~~l~nLnsD~f~s~srpfi~qEVID~ 255 (504)
T KOG2212|consen 197 IAEYLNHLID-IGVAGFRVDASKHMWPG--------------------DIKAILDKLHNLNSDWFPSGSKPFIYQEVIDL 255 (504)
T ss_pred HHHHHHHHHH-hccceeeechhhccChH--------------------HHHHHHHHHhhcccccccCCCCceehhhhhhc
Confidence 9999999999 99999999999999321 22222 11222222222222345666665432
Q ss_pred --CCccccccccCCcccchhhhHHHHHHH-----HHHHhhhhhhhhhhhhHhhhccccccccceecccCccccccCccch
Q 004253 537 --MPTFCIPVQDGGVGFDYRLQMAIADKW-----IELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTI 609 (765)
Q Consensus 537 --~p~~~~~~~~gg~gfD~~l~~~~~d~~-----~~~lk~~~~~~~~~~~~~~l~~~~~~~~~v~f~enHD~~r~g~kt~ 609 (765)
.+--+..|...|-.-.|++...+...+ .++|+.-..+|... ..+++++|++|||+.|-....-
T Consensus 256 GgE~v~~~dY~g~G~~TeF~f~~~ig~~~r~~~~~kyL~nwG~~wGf~----------~s~~~L~FvDNHDNQR~~gagg 325 (504)
T KOG2212|consen 256 GGEPIKSSDYFGNGRVTEFKFGAKLGTVIRKWNKMKYLKNWGEGWGFM----------PSDRALVFVDNHDNQRGHGAGG 325 (504)
T ss_pred CCceeecccccCCceeeeeechHHHHHHHhcchhHHHHHhcCCccCcC----------CCcceEEEeccCcccccCCCCc
Confidence 222222232223223444444443222 23344333444322 1246789999999998633211
Q ss_pred hhhccChhhHhhhhcCCCCCccchhhHHHHHHHHHHHHhcC-CcceeecccccccCCCC
Q 004253 610 AFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLG-GEAYLNFMGNEFGHPEW 667 (765)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~k~a~lllltlp-G~P~l~yyGdE~G~~e~ 667 (765)
+. .+.....++.||+.+++|++| |+|-+ ..---|-..+|
T Consensus 326 a~------------------VltYK~~~~YkmA~~FmLA~PyG~~RV-MSSFaF~~~D~ 365 (504)
T KOG2212|consen 326 AS------------------VLTYKDARLYKMAVGFMLAHPYGFTRV-MSSFAFDVNDW 365 (504)
T ss_pred ce------------------EEEecchhhhhhhhhhheecccCcchh-heeeeeecCCC
Confidence 10 111233577899999999999 99987 44333433444
No 41
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.79 E-value=5.2e-19 Score=159.62 Aligned_cols=96 Identities=56% Similarity=1.109 Sum_probs=86.4
Q ss_pred eCCcEEEEEecCCcCeEEEEeecCCCCCCccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeCCCC-ccccCCccc
Q 004253 201 SDTGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG-IKDSIPAWI 279 (765)
Q Consensus 201 ~~~gv~FrvWAP~A~~V~L~gdFN~w~~~~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~~~-~~~~~~~~~ 279 (765)
.++|++||||||+|++|+|+||||+|+...++|++.++|+|+++||++.+|...++||+.|||++...+| ..+++|||+
T Consensus 3 ~~~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA 82 (99)
T cd02854 3 EDGGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWI 82 (99)
T ss_pred CCCeEEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcce
Confidence 4678999999999999999999999998889999999999999999998888889999999999988544 468999999
Q ss_pred eeeccCCCCCCCCcEEe
Q 004253 280 KFSVQAPGEIPYNGIYY 296 (765)
Q Consensus 280 ~~~~~~~~~~~~~~~~~ 296 (765)
+++++.+....|++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~ 99 (99)
T cd02854 83 KYVTQDKETALYDGVFW 99 (99)
T ss_pred eEEEeCCCCcceeeEEC
Confidence 99999988777777664
No 42
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.63 E-value=5.8e-14 Score=170.97 Aligned_cols=82 Identities=23% Similarity=0.389 Sum_probs=74.8
Q ss_pred CCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCC----CHHHHHHHHHHHhhc-CCEEEEee
Q 004253 333 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG----TPDDLKSLIDKAHEL-GLLVLMDI 407 (765)
Q Consensus 333 ~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~G----t~~efk~LV~~aH~~-GI~VIlDv 407 (765)
.|+|.+.. ++|++|++||||.|||+||++-.. .++.|++.||+.++|.|| +.+||++||+++|++ ||+||+|+
T Consensus 128 mG~~~~w~-~~L~~ik~lGyN~IhftPI~~~G~-SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv 205 (1464)
T TIGR01531 128 LGPLSEWE-PRLRVAKEKGYNMIHFTPLQELGG-SNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI 205 (1464)
T ss_pred cCCHHHHH-HHHHHHHHcCCCEEEeCCCccCCC-CCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 48998877 799999999999999999997654 368999999999999995 899999999999997 99999999
Q ss_pred ccccccCCC
Q 004253 408 VHSHASNNV 416 (765)
Q Consensus 408 V~NH~~~~~ 416 (765)
|+|||+.++
T Consensus 206 V~NHTa~ds 214 (1464)
T TIGR01531 206 VFNHTANNS 214 (1464)
T ss_pred eecccccCC
Confidence 999999865
No 43
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.61 E-value=1.2e-15 Score=190.89 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=82.2
Q ss_pred ceEEEeecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHH
Q 004253 317 LRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKA 396 (765)
Q Consensus 317 ~vIYE~hv~~~s~~~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~a 396 (765)
..+|-++... .+||.+++ ++||||++||||+|||+||++......|||+++||+.|++.|||.++|++||++|
T Consensus 744 ~atyrlq~~~------~~tf~~~~-~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~a 816 (1693)
T PRK14507 744 RATYRLQFHK------DFTFADAE-AILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAAL 816 (1693)
T ss_pred ceeEEEEeCC------CCCHHHHH-HHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHH
Confidence 3477775542 48999999 6999999999999999999997555679999999999999999999999999999
Q ss_pred hhcCCEEEEeeccccccC
Q 004253 397 HELGLLVLMDIVHSHASN 414 (765)
Q Consensus 397 H~~GI~VIlDvV~NH~~~ 414 (765)
|++||+||||+|+||++.
T Consensus 817 h~~Gi~vilDiV~NH~~~ 834 (1693)
T PRK14507 817 KAHGLGQLLDIVPNHMGV 834 (1693)
T ss_pred HHCCCEEEEEecccccCC
Confidence 999999999999999984
No 44
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.47 E-value=5.3e-14 Score=123.26 Aligned_cols=79 Identities=33% Similarity=0.682 Sum_probs=64.1
Q ss_pred cCCcEEeCC--cEEEEEecCCcCeEEEEeecCC-CCCCccCCc-cCCCceEEEEeCCCCCCCCCCCCC-CEEEEEeeCCC
Q 004253 195 KFGFIRSDT--GITYREWAPGAKSASLIGDFNN-WNPNADIMT-QNEFGVWEIFLPNNADGSPPIPHG-SRVKIHMDTPS 269 (765)
Q Consensus 195 ~lG~~~~~~--gv~FrvWAP~A~~V~L~gdFN~-w~~~~~~m~-~~~~GvW~i~lp~~~~G~~~~~~g-~~y~~~~~~~~ 269 (765)
+||+++.++ +++||+|||+|++|.|+++|++ |....++|+ ++++|+|+++||+. +++| ..|+|+++...
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~------~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGD------LPPGGYYYKYRIDGDD 74 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGC------GTTTT-EEEEEEEETT
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCC------cCCCCEEEEEEEEeCC
Confidence 699999986 8999999999999999999999 888889999 68999999999963 3355 59999999877
Q ss_pred C-ccccCCccc
Q 004253 270 G-IKDSIPAWI 279 (765)
Q Consensus 270 ~-~~~~~~~~~ 279 (765)
+ ....+|||+
T Consensus 75 g~~~~~~DPYA 85 (85)
T PF02922_consen 75 GETPEVVDPYA 85 (85)
T ss_dssp TEEEEET-TT-
T ss_pred CcEEEEeCCCC
Confidence 4 345566664
No 45
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.43 E-value=4e-13 Score=121.72 Aligned_cols=92 Identities=21% Similarity=0.359 Sum_probs=74.9
Q ss_pred CCcEEeCCcEEEEEecCCcCeEEEEeecCCCCC----CccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeCC-CC
Q 004253 196 FGFIRSDTGITYREWAPGAKSASLIGDFNNWNP----NADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP-SG 270 (765)
Q Consensus 196 lG~~~~~~gv~FrvWAP~A~~V~L~gdFN~w~~----~~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~-~~ 270 (765)
||+++.++|++|+||||+|++|.|++ |++|+. ..++|++.++|+|+++|++..+ |..|+|+++++ +.
T Consensus 1 lGa~~~~~~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~-------g~~Y~y~i~~~~~~ 72 (100)
T cd02860 1 LGAVYTPEKTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDLE-------GYYYLYEVKVYKGE 72 (100)
T ss_pred CCCEEeCCCEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCccC-------CcEEEEEEEEeceE
Confidence 79999999999999999999999998 787751 3578999899999999997654 77899999876 33
Q ss_pred ccccCCccceeeccCCCCCCCCcEEeCCC
Q 004253 271 IKDSIPAWIKFSVQAPGEIPYNGIYYDPP 299 (765)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~dp~ 299 (765)
.....+||++...... . .++++|++
T Consensus 73 ~~~~~DPyA~~~~~~~-~---~s~i~d~~ 97 (100)
T cd02860 73 TNEVVDPYAKALSANG-E---RSVDLDDK 97 (100)
T ss_pred EEEEcCcccEeEeeCC-C---ceEECChH
Confidence 4577899998765443 2 57888875
No 46
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=7.5e-13 Score=150.79 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=75.5
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccC
Q 004253 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~ 414 (765)
||.... +.||||++|||.|+|++||+.......|||||+|...|+|.+|+.+.|..||.++|++||++|+|||+||++.
T Consensus 17 tF~~A~-~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav 95 (889)
T COG3280 17 TFADAR-ALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAV 95 (889)
T ss_pred CHHHHH-HhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhc
Confidence 677776 6999999999999999999998777789999999999999999999999999999999999999999999986
Q ss_pred C
Q 004253 415 N 415 (765)
Q Consensus 415 ~ 415 (765)
.
T Consensus 96 ~ 96 (889)
T COG3280 96 G 96 (889)
T ss_pred c
Confidence 5
No 47
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=99.34 E-value=5.2e-12 Score=115.10 Aligned_cols=93 Identities=31% Similarity=0.654 Sum_probs=75.4
Q ss_pred hhhcccccCCcEEeC----CcEEEEEecCCcCeEEEEeecCCCCCCccCCccCC-CceEEEEeCCCCCCCCCCCCCCEEE
Q 004253 188 AFSRGYEKFGFIRSD----TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNE-FGVWEIFLPNNADGSPPIPHGSRVK 262 (765)
Q Consensus 188 ~fa~gy~~lG~~~~~----~gv~FrvWAP~A~~V~L~gdFN~w~~~~~~m~~~~-~GvW~i~lp~~~~G~~~~~~g~~y~ 262 (765)
.++..|..||+|+.+ ++++||+|+|+|++|.|+++||+|.....+|++.+ .|+|++++|+.. +|..|+
T Consensus 2 ~~~~p~~~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~-------~~~~Y~ 74 (106)
T cd02855 2 THERLYEKLGAHPTEVDGVSGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLG-------EGELYK 74 (106)
T ss_pred cchhHHHhcCCEEcccCCcCCEEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCCC-------CCCEEE
Confidence 356677899999988 89999999999999999999999976677999876 899999999643 356799
Q ss_pred EEeeCCCC-ccccCCccceeeccCCC
Q 004253 263 IHMDTPSG-IKDSIPAWIKFSVQAPG 287 (765)
Q Consensus 263 ~~~~~~~~-~~~~~~~~~~~~~~~~~ 287 (765)
|++....+ .....+||+..+.+.++
T Consensus 75 ~~v~~~~g~~~~~~DPYa~~~~~~~~ 100 (106)
T cd02855 75 YEILGADGHLPLKADPYAFYSELRPG 100 (106)
T ss_pred EEEECCCCCEEEeeCCCceeeEeCCC
Confidence 99987543 45678888877666543
No 48
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.31 E-value=6e-12 Score=114.72 Aligned_cols=65 Identities=22% Similarity=0.299 Sum_probs=56.5
Q ss_pred cCCcEEeCCcEEEEEecCCcCeEEEEeecCCCC-CCccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeC
Q 004253 195 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWN-PNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 267 (765)
Q Consensus 195 ~lG~~~~~~gv~FrvWAP~A~~V~L~gdFN~w~-~~~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~ 267 (765)
+||+++.++|++|+||||+|++|.|++ |+++. ...++|++.++|+|+++|++... |..|+|++++
T Consensus 1 plGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~~-------g~~Y~y~i~g 66 (103)
T cd02856 1 PLGATLDGEGCNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIKA-------GQRYGFRVHG 66 (103)
T ss_pred CCccEEeCCCeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCCC-------CCEEEEEECC
Confidence 589999999999999999999999998 66554 44578999889999999997654 6799999987
No 49
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.22 E-value=6e-11 Score=104.29 Aligned_cols=84 Identities=24% Similarity=0.304 Sum_probs=64.2
Q ss_pred CcEEeC-CcEEEEEecCCcCeEEEEeecCCCCCCccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeCCCCccccC
Q 004253 197 GFIRSD-TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSI 275 (765)
Q Consensus 197 G~~~~~-~gv~FrvWAP~A~~V~L~gdFN~w~~~~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~~~~~~~~ 275 (765)
|+++++ ++++|+||||+|++|.|++. + + ...+|++.++|+|++++++. + |..|+|+++. .....
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~-~-~--~~~~m~~~~~G~W~~~v~~~-~-------g~~Y~y~v~~---~~~~~ 65 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLD-D-G--EEIPMQRDGDGWFEAEVPGA-A-------GTRYRYRLDD---GTPVP 65 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEec-C-C--CcccCccCCCcEEEEEeCCC-C-------CCeEEEEECC---CcCCC
Confidence 788887 89999999999999999973 2 2 35789999999999999976 5 5689999973 24667
Q ss_pred CccceeeccCCCCCCCCcEEeCC
Q 004253 276 PAWIKFSVQAPGEIPYNGIYYDP 298 (765)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~dp 298 (765)
+||+++....... .++++||
T Consensus 66 DP~a~~~~~~~~~---~s~v~~~ 85 (85)
T cd02853 66 DPASRFQPEGVHG---PSQVVDP 85 (85)
T ss_pred CCccccCCCCCCC---CeEeeCc
Confidence 8888764322222 4677664
No 50
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.05 E-value=5.9e-10 Score=104.23 Aligned_cols=63 Identities=17% Similarity=0.320 Sum_probs=53.0
Q ss_pred CcEEeCCcEEEEEecCCcCeEEEEeecCCCC---C-CccCCccCC---CceEEEEeCCCCCCCCCCCCCCEEEEEeeC
Q 004253 197 GFIRSDTGITYREWAPGAKSASLIGDFNNWN---P-NADIMTQNE---FGVWEIFLPNNADGSPPIPHGSRVKIHMDT 267 (765)
Q Consensus 197 G~~~~~~gv~FrvWAP~A~~V~L~gdFN~w~---~-~~~~m~~~~---~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~ 267 (765)
|++++++|++|+||||+|++|.|++ |++|+ + ..++|.+.+ +|+|+++|++... |..|+|++++
T Consensus 1 Ga~~~~~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~-------g~~Y~y~v~g 70 (119)
T cd02852 1 GATIDAGGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKP-------GQLYGYRVDG 70 (119)
T ss_pred CCeEeCCCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCC-------CCEEEEEECC
Confidence 8899999999999999999999999 88775 2 245787655 6999999998655 6689999986
No 51
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.91 E-value=1.3e-09 Score=131.22 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=68.5
Q ss_pred hhhcccccCCcEEeCCcEEEEEecCCcCeEEEEeecCCCCCCccCCccC-CCceEEEEeCCCCCCCCCCCCCCEEEEEee
Q 004253 188 AFSRGYEKFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVKIHMD 266 (765)
Q Consensus 188 ~fa~gy~~lG~~~~~~gv~FrvWAP~A~~V~L~gdFN~w~~~~~~m~~~-~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~ 266 (765)
...+.|+.||+|....|++|+||||+|++|+|+||||+ ...++|.+. +.|+|+++|| ... |..|||++.
T Consensus 13 ~~~~~~~~lGah~~~~g~~f~vwaP~A~~V~vvgdfn~--~~~~~m~~~~~~G~w~~~ip-~~~-------g~~YKy~i~ 82 (726)
T PRK05402 13 RHHDPFSVLGPHPTGAGLVVRALLPGAEEVWVILPGGG--RKLAELERLHPRGLFAGVLP-RKG-------PFDYRLRVT 82 (726)
T ss_pred ccCCHHHhcCCCCCCCcEEEEEECCCCeEEEEEeecCC--CccccceEcCCCceEEEEec-CCC-------CCCeEEEEE
Confidence 56778999999999999999999999999999999995 567899875 6799999999 765 567999998
Q ss_pred CCCCc-cccCCccce
Q 004253 267 TPSGI-KDSIPAWIK 280 (765)
Q Consensus 267 ~~~~~-~~~~~~~~~ 280 (765)
+ +|. ....+||+.
T Consensus 83 ~-~g~~~~k~DPyaf 96 (726)
T PRK05402 83 W-GGGEQLIDDPYRF 96 (726)
T ss_pred e-CCceeEecccccc
Confidence 7 553 456667663
No 52
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.83 E-value=9e-09 Score=90.53 Aligned_cols=57 Identities=26% Similarity=0.423 Sum_probs=45.4
Q ss_pred CcEEEEEecCCcCeEEEEeecCCCCCCccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeC
Q 004253 203 TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 267 (765)
Q Consensus 203 ~gv~FrvWAP~A~~V~L~gdFN~w~~~~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~ 267 (765)
+.++|++|||.|++|.|+++||+| ..++|++.++|+|+++++....|. ++|+|.+++
T Consensus 6 ~~v~F~vwAP~A~~V~L~~~~~~~--~~~~m~~~~~G~W~~~v~~l~~g~------Y~Y~~~vdg 62 (85)
T cd02858 6 RTVTFRLFAPKANEVQVRGSWGGA--GSHPMTKDEAGVWSVTTGPLAPGI------YTYSFLVDG 62 (85)
T ss_pred CcEEEEEECCCCCEEEEEeecCCC--ccEeCeECCCeEEEEEECCCCCcE------EEEEEEECC
Confidence 469999999999999999999865 357899999999999996533221 367777764
No 53
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.68 E-value=4.5e-08 Score=85.47 Aligned_cols=55 Identities=31% Similarity=0.500 Sum_probs=46.7
Q ss_pred cEEEEEecCCcCeEEEEeecCCCCCCccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeC
Q 004253 204 GITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 267 (765)
Q Consensus 204 gv~FrvWAP~A~~V~L~gdFN~w~~~~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~ 267 (765)
.++|++|||.|++|+|+|+||+|+ ..+|++.+.|+|+++++ ...|. ..|||.+++
T Consensus 3 ~vtf~~~ap~a~~V~v~G~fn~W~--~~~m~~~~~G~w~~~~~-l~~G~------y~Ykf~vdg 57 (82)
T cd02861 3 PVVFAYRGPEADSVYLAGSFNNWN--AIPMEREGDGLWVVTVE-LRPGR------YEYKFVVDG 57 (82)
T ss_pred cEEEEEECCCCCEEEEEeECCCCC--cccCEECCCCcEEEEEe-CCCCc------EEEEEEECC
Confidence 389999999999999999999997 57899988899999997 33443 289998864
No 54
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.63 E-value=3e-07 Score=100.13 Aligned_cols=188 Identities=19% Similarity=0.252 Sum_probs=102.8
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCcccC-CCCCCCCCccccccCCCCCCC--CHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEH-SYYASFGYHVTNFFAPSSRCG--TPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGvt~I~L~Pi~e~-~~~~~~GY~~~~~~a~~~~~G--t~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
+-..+. +.|+.|+++|+|+|.+-=-... ..|.| -+.|...+......+ +-+=|+.||++||++||+|.--+.++.
T Consensus 17 ~~~~~~-~~l~~l~~~~~N~V~~qVr~~gda~Y~S-~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 17 SKEQID-EMLDDLKSAGFNAVFVQVRPRGDALYPS-DIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEEEEeCcEEEecc-cccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 344555 7999999999999976321111 01111 011111111111111 247799999999999999998885543
Q ss_pred ccCCCcccCcCCCCCCCCCcccCCCCCccc-----CCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccc
Q 004253 412 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWM-----WDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTH 486 (765)
Q Consensus 412 ~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~-----w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~ 486 (765)
..... +......+.++.....+.... .+..-||-++|+||+||++.++-.++.|.|||+.||-.-.. +..
T Consensus 95 ~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp-~~~ 169 (311)
T PF02638_consen 95 NAPDV----SHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYP-PPS 169 (311)
T ss_pred CCCch----hhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecccccc-ccc
Confidence 32211 001111122221111111100 12235899999999999999999999999999999943211 111
Q ss_pred cCccccccCCCCcccC-----ccCC-------hhHH-HHHHHHHHHHhhcCCCceE
Q 004253 487 HGLQVAFTGNYSEYFG-----FATD-------VDAV-VYLMLVNDMIHGLYPEAVS 529 (765)
Q Consensus 487 ~g~~~~f~~~~~~~~g-----~~~d-------~~a~-~~l~~~~~~v~~~~p~~i~ 529 (765)
.|....-...|..+.| ...| .+.+ .|.+++.+.+++.+|++.+
T Consensus 170 ~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~ 225 (311)
T PF02638_consen 170 FGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKF 225 (311)
T ss_pred CCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 1221100011222222 1112 1222 7888999999999998654
No 55
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.47 E-value=6.1e-07 Score=77.18 Aligned_cols=60 Identities=33% Similarity=0.455 Sum_probs=50.8
Q ss_pred CcEEEEEecCCcCeEEEEeecCCCCCCccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeCCC
Q 004253 203 TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS 269 (765)
Q Consensus 203 ~gv~FrvWAP~A~~V~L~gdFN~w~~~~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~~ 269 (765)
++++|++|||+|++|.|+++|++| ...++|++.++|+|++.|+... +++..|+|++++..
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~-~~~~~~~~~~~g~w~~~v~~~~------~~~~~Y~~~v~~~~ 63 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGD-TQLIPMTKVEDGYWEVELPLPS------PGKYQYKYVLDGGK 63 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCC-CCcccCEECCCceEEEEEcCCC------CCCeEEEEEEeCCC
Confidence 579999999999999999999884 3468999999999999999754 24779999988654
No 56
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.38 E-value=6.2e-07 Score=99.89 Aligned_cols=81 Identities=23% Similarity=0.406 Sum_probs=70.7
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCC------HHHHHHHHHHHh-hcCCEEEEe
Q 004253 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGT------PDDLKSLIDKAH-ELGLLVLMD 406 (765)
Q Consensus 334 Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt------~~efk~LV~~aH-~~GI~VIlD 406 (765)
|.|..-. ++|+.++++|||.|++.|+++....+ --|.+.|...+++.+.. .+++++||.+++ +.||.+|.|
T Consensus 19 G~~~~W~-~~l~~~~~~GYNmIHftPlq~~G~S~-S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~D 96 (423)
T PF14701_consen 19 GPFSDWE-KHLKVISEKGYNMIHFTPLQERGESN-SPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTD 96 (423)
T ss_pred CCHhHHH-HHHHHHHHcCCcEEEecccccCCCCC-CCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEE
Confidence 7777666 69999999999999999999976533 46999999999998765 379999999995 799999999
Q ss_pred eccccccCCC
Q 004253 407 IVHSHASNNV 416 (765)
Q Consensus 407 vV~NH~~~~~ 416 (765)
||+|||+.+.
T Consensus 97 vV~NHtA~nS 106 (423)
T PF14701_consen 97 VVLNHTANNS 106 (423)
T ss_pred EeeccCcCCC
Confidence 9999999886
No 57
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.26 E-value=4.4e-06 Score=79.59 Aligned_cols=117 Identities=25% Similarity=0.321 Sum_probs=80.6
Q ss_pred hhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccc---cccCCCcc
Q 004253 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS---HASNNVLD 418 (765)
Q Consensus 342 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~N---H~~~~~~~ 418 (765)
+.+++||++|+|+|.+..--- +.|-|-|+......+.++ .+-|+++|++||++||+|+.=+-++ .++..|++
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h----~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCH----GGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccc----cEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCc
Confidence 578899999999998754211 124466777777778887 7889999999999999998766554 11223333
Q ss_pred cCcCCCCCCCCCcccCCCCC--------cccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEec
Q 004253 419 GLNMFDGTDGHYFHSGSRGY--------HWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFD 477 (765)
Q Consensus 419 ~~~~f~g~~~~yf~~~~~g~--------~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD 477 (765)
|+..+..|. .+.|...++| + ..+++++..++--++.|.+|||=||
T Consensus 79 -----------W~~~~~~G~~~~~~~~~~~~~~~~c~n--s-~Y~e~~~~~i~Ei~~~y~~DGiF~D 131 (132)
T PF14871_consen 79 -----------WFVRDADGRPMRGERFGYPGWYTCCLN--S-PYREFLLEQIREILDRYDVDGIFFD 131 (132)
T ss_pred -----------eeeECCCCCCcCCCCcCCCCceecCCC--c-cHHHHHHHHHHHHHHcCCCCEEEec
Confidence 333222221 1223333444 3 4558999999999999999999998
No 58
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=98.13 E-value=0.00012 Score=84.65 Aligned_cols=243 Identities=16% Similarity=0.233 Sum_probs=117.1
Q ss_pred HHHHHHHHHhhcCCEEEEeeccccc--cCCCccc-----Cc------CCCCCCCCCcccCCCCCcccCCCCCCCCCCHH-
Q 004253 388 DLKSLIDKAHELGLLVLMDIVHSHA--SNNVLDG-----LN------MFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE- 453 (765)
Q Consensus 388 efk~LV~~aH~~GI~VIlDvV~NH~--~~~~~~~-----~~------~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~- 453 (765)
+++++.+.||++||++|.|+.+--. |.+.... +. ..-|.+|.+|... |. .|+.+.+|+..-.
T Consensus 199 Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~~lF~l~~~~~p~~vaGaPPD~Fs~~--GQ--~WG~P~y~w~~l~~ 274 (497)
T PRK14508 199 QWKALKAYANDKGIEIIGDLPIYVAYDSADVWANPELFKLDEDGKPTVVAGVPPDYFSET--GQ--LWGNPVYNWDALRK 274 (497)
T ss_pred HHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcChhhhcCCCCCCcceeeeCCCCCCCcc--cC--cCCCCCcCHHHHHh
Confidence 4556677799999999999986432 2221000 01 1146667777543 32 4777777754211
Q ss_pred -HHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEee
Q 004253 454 -VLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGE 532 (765)
Q Consensus 454 -v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE 532 (765)
--+..++-+++-++ .+|.+|+|.+-.+... .-++.+ .-....|........+++..+...+ +++.+|||
T Consensus 275 ~gy~ww~~rlr~~~~--~~~~lRIDH~~Gf~r~-W~IP~~---~~~a~~G~~v~~p~~~l~~~l~~e~----~~~~vigE 344 (497)
T PRK14508 275 DGYRWWIERLRRSFK--LYDIVRIDHFRGFEAY-WEIPAG---EKTAINGRWVPGPGKDLFEAVKEEL----GDLPIIAE 344 (497)
T ss_pred cCcHHHHHHHHHHHH--hCCeEEecchhhhcee-eeecCC---CCCCCCCeeecCCHHHHHHHHHHHh----CCCCEEEe
Confidence 11234555555554 8999999987543211 001110 0000112222233445555554433 67999999
Q ss_pred ccCCCCcccccccc-CC-cccchhhhHHHHHHHHHHHhhhhhhhhhhhhHhhhccccccccceecccCccccccCccchh
Q 004253 533 DVSGMPTFCIPVQD-GG-VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIA 610 (765)
Q Consensus 533 ~~~~~p~~~~~~~~-gg-~gfD~~l~~~~~d~~~~~lk~~~~~~~~~~~~~~l~~~~~~~~~v~f~enHD~~r~g~kt~~ 610 (765)
+.+.-|...+.... -| .|+.-- .+ . .+. ..... .+ ...++..+|.|+.+||+.++. .
T Consensus 345 DLG~vp~~V~~~l~~~gi~g~~Vl-~f----------~-~~~--~~~~~--~~-p~~~~~~~v~~~~THD~~Tl~----g 403 (497)
T PRK14508 345 DLGVITPDVEELRDRFGFPGMKIL-QF----------A-FDG--DSDNP--YL-PHNYPRNSVVYTGTHDNDTTV----G 403 (497)
T ss_pred ECCCCCHHHHHHHHHcCCCccEEE-Ee----------c-CCC--CCCCC--CC-CcCCCCCeEEECCCCCCHHHH----H
Confidence 98655544333221 11 111100 00 0 000 00000 01 224567899999999998762 2
Q ss_pred hhc-cChhhH---hhhhcCCCCCccchhhHHHHHHHHHHHHhcCCcceeecccccccCCC--CCCCCC
Q 004253 611 FWL-MDKDMY---DFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPE--WIDFPR 672 (765)
Q Consensus 611 ~~~-~~~~~~---~~~~~~~~~~~~~~~g~~l~k~a~lllltlpG~P~l~yyGdE~G~~e--~~d~p~ 672 (765)
.|. .+.+.. ..+.... + . ...+..+.-+++..+..=+|+-+=|=+|+.+ .+..|.
T Consensus 404 Ww~~~~~~~~~~~~~~l~~~---~--~--~~~~~~~~~~~~~S~s~l~i~~lqDllgl~~~~r~N~PG 464 (497)
T PRK14508 404 WWESLDPEERKRVADYLGRS---S--E--EEIHWALIRLALASVADLAILPMQDLLGLGSEARMNTPG 464 (497)
T ss_pred HHhCCCHHHHHHHHHHhccC---C--c--hhHHHHHHHHHhcCCchheeeeHHHHhCCCCcCCCcCCC
Confidence 231 121111 1111110 0 0 2233344445566666556657777777765 444443
No 59
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.00 E-value=6e-05 Score=84.05 Aligned_cols=184 Identities=19% Similarity=0.222 Sum_probs=105.9
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCcccCC-CCCC-----CCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeec
Q 004253 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHS-YYAS-----FGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 408 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~-~~~~-----~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV 408 (765)
+=.++. +.|+.|+.||+|+|+.-=..... .|.| .++. ...+.+++- -+=|..+|++||++||+|+--+-
T Consensus 62 ~~~el~-~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~-~~~~~~~~g---~DpLa~~I~~AHkr~l~v~aWf~ 136 (418)
T COG1649 62 QRQELK-DILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL-PGVLGVDPG---YDPLAFVIAEAHKRGLEVHAWFN 136 (418)
T ss_pred cHHHHH-HHHHHHHHcCCceeEEEEecCccccccccccccccCc-CcccCCCCC---CChHHHHHHHHHhcCCeeeechh
Confidence 334566 58999999999999864332211 1111 1222 111222333 37799999999999999999887
Q ss_pred cccccCCCcccCcCCCCCCCCCcccCCCC----CcccC-CCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEeccccccc
Q 004253 409 HSHASNNVLDGLNMFDGTDGHYFHSGSRG----YHWMW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMM 483 (765)
Q Consensus 409 ~NH~~~~~~~~~~~f~g~~~~yf~~~~~g----~~~~w-~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~ 483 (765)
+--++.+..... ...+.+......+ .+..| ...-||-++|+|+++|.+.+.--+..|.|||..||---++.
T Consensus 137 ~~~~a~~~s~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~ 212 (418)
T COG1649 137 PYRMAPPTSPLT----KRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDYFYYP 212 (418)
T ss_pred hcccCCCCChhH----hhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecceeeccc
Confidence 766665432111 0111111111111 01111 23458999999999999999999999999999999754321
Q ss_pred ccccCccccccCC---CCcccCccCChh---------HHHHHHHHHHHHhhcCCCceE
Q 004253 484 YTHHGLQVAFTGN---YSEYFGFATDVD---------AVVYLMLVNDMIHGLYPEAVS 529 (765)
Q Consensus 484 ~~~~g~~~~f~~~---~~~~~g~~~d~~---------a~~~l~~~~~~v~~~~p~~i~ 529 (765)
.+.|... .+-. |..--+...+.+ ...|.+.++..|++..|++++
T Consensus 213 -~~~gy~~-~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~ 268 (418)
T COG1649 213 -IPFGYDP-DTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKF 268 (418)
T ss_pred -CccccCc-hHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEE
Confidence 1111110 0000 000000111122 126889999999999998654
No 60
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.97 E-value=1.3e-05 Score=92.13 Aligned_cols=99 Identities=23% Similarity=0.305 Sum_probs=63.4
Q ss_pred CCceEEEeecCC--CCCCCCCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCC-------CCCccccccCC----CC
Q 004253 315 KSLRIYEAHVGM--SSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYAS-------FGYHVTNFFAP----SS 381 (765)
Q Consensus 315 ~~~vIYE~hv~~--~s~~~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~-------~GY~~~~~~a~----~~ 381 (765)
..-+|||-+--. |-..+.--|..-|+ +-.+-+|++|||..||-|-+-++.+++ -||.-+|-|.+ ..
T Consensus 563 DSqvIYEgFSNFQ~~~t~~~eytN~~IA-~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~pt 641 (809)
T PF02324_consen 563 DSQVIYEGFSNFQDFPTTPSEYTNVVIA-KNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPT 641 (809)
T ss_dssp HT-EEEE---TTB---SSGGGSHHHHHH-HTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-B
T ss_pred hcchhhccccccccCCCChHHHHHHHHH-HhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCC
Confidence 356899976532 22222334666666 689999999999999999888766555 58999888875 45
Q ss_pred CCCCHHHHHHHHHHHhhcCCEEEEeeccccccC
Q 004253 382 RCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (765)
Q Consensus 382 ~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~ 414 (765)
+|||.+||+..|+++|+.||+||.|+|++.+..
T Consensus 642 KYGs~~dL~~AikALH~~GiqviaDwVpdQiYn 674 (809)
T PF02324_consen 642 KYGSVEDLRNAIKALHAAGIQVIADWVPDQIYN 674 (809)
T ss_dssp TTB-HHHHHHHHHHHHHTT-EEEEEE-TSEE--
T ss_pred CCCCHHHHHHHHHHHHHcCcchhhhhchHhhhC
Confidence 999999999999999999999999999987754
No 61
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=97.74 E-value=0.00011 Score=85.14 Aligned_cols=51 Identities=14% Similarity=0.138 Sum_probs=31.1
Q ss_pred CCCCH-HhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCC
Q 004253 332 IINTY-ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRC 383 (765)
Q Consensus 332 ~~Gt~-~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~ 383 (765)
++|+| ..+. ..++.+++.|+..++|.|+.+.....++-|.+.+=|+.+|-|
T Consensus 13 GIGDfg~dl~-~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPly 64 (496)
T PF02446_consen 13 GIGDFGDDLY-QFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLY 64 (496)
T ss_dssp SS--SSHHHH-HHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGG
T ss_pred ceecHHHHHH-HHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHH
Confidence 78999 7777 699999999999999999998866666688888888776633
No 62
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=97.73 E-value=8e-05 Score=64.61 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=43.7
Q ss_pred EEEEEecCCcCeEEEEeecCCCCCCccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeC
Q 004253 205 ITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 267 (765)
Q Consensus 205 v~FrvWAP~A~~V~L~gdFN~w~~~~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~ 267 (765)
++|+..+ .|++|+|+|+||+|+. ..||++..+| |++.++ ...|. ..|||.+++
T Consensus 4 v~f~~~~-~a~~V~v~G~F~~W~~-~~pm~~~~~~-~~~~~~-L~~g~------y~YkF~Vdg 56 (79)
T cd02859 4 TTFVWPG-GGKEVYVTGSFDNWKK-KIPLEKSGKG-FSATLR-LPPGK------YQYKFIVDG 56 (79)
T ss_pred EEEEEcC-CCcEEEEEEEcCCCCc-cccceECCCC-cEEEEE-cCCCC------EEEEEEECC
Confidence 7898888 8999999999999987 6899998878 999886 33443 388998865
No 63
>PLN02635 disproportionating enzyme
Probab=97.63 E-value=0.00087 Score=77.79 Aligned_cols=139 Identities=17% Similarity=0.238 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhhcCCEEEEeecc--ccccCCCcccCcC-----------CCCCCCCCcccCCCCCcccCCCCCCCCCCH-
Q 004253 387 DDLKSLIDKAHELGLLVLMDIVH--SHASNNVLDGLNM-----------FDGTDGHYFHSGSRGYHWMWDSRLFNYGSW- 452 (765)
Q Consensus 387 ~efk~LV~~aH~~GI~VIlDvV~--NH~~~~~~~~~~~-----------f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~- 452 (765)
.+++++-+.||++||++|-|+.+ ++-|.+....... .-|.+|.||... |. .|+.+.+|+..-
T Consensus 224 ~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaDvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~--GQ--~WG~P~y~w~~l~ 299 (538)
T PLN02635 224 RQWQAVRSYANEKGISIIGDMPIYVGGHSADVWANRKLFLLNKTGFPLLVSGVPPDAFSET--GQ--LWGSPLYDWKAMA 299 (538)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecccCCCcHHHhcCHHhhcCCCCCCcceeeeCCCCcCCcc--cc--cCCCcCcCHHHHH
Confidence 45667788899999999999984 4444332111111 236667777643 32 477777765321
Q ss_pred -HHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEe
Q 004253 453 -EVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 531 (765)
Q Consensus 453 -~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~ia 531 (765)
.--+..++-+++-++ .+|++|+|.+..+..-= -++. +.-....|........+++. .+.+..+++.+||
T Consensus 300 ~~gy~ww~~Rlr~~~~--~~d~lRIDHf~Gf~r~W-~IP~---g~~ta~~G~wv~~Pg~~l~~----~l~~~~~~~~vIa 369 (538)
T PLN02635 300 KDGYSWWAGRMRRALE--LYDEFRIDHFRGFAGYW-AVPA---DAKTAMNGRWKVGPGKSFFD----AIKKAVGKIDIIA 369 (538)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhheee-eccC---CCCCCCCCeeeeCCHHHHHH----HHHHHcCCCCEEE
Confidence 111234455555554 78999999875432110 0110 00001122233334444553 3455556899999
Q ss_pred eccCCCCc
Q 004253 532 EDVSGMPT 539 (765)
Q Consensus 532 E~~~~~p~ 539 (765)
|+...-+.
T Consensus 370 EDLG~I~~ 377 (538)
T PLN02635 370 EDLGVITE 377 (538)
T ss_pred eeCCCCCH
Confidence 99865444
No 64
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.44 E-value=0.0028 Score=70.08 Aligned_cols=142 Identities=23% Similarity=0.306 Sum_probs=84.2
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEECCcccCCC--------------CCCCCCccccccCCCCCCCCHHHHHHHHHHHhh
Q 004253 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSY--------------YASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHE 398 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~--------------~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~ 398 (765)
+-..+. +.++.+++.|| ++|+|=+-+.... ...|-|+...| ....+|- +.++||+++|+
T Consensus 22 ~~~ev~-~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f-~~~~~FP---dp~~mi~~Lh~ 96 (340)
T cd06597 22 TQAEVM-RQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSF-PVEGRWP---NPKGMIDELHE 96 (340)
T ss_pred CHHHHH-HHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceeccccc-CccccCC---CHHHHHHHHHH
Confidence 445565 68889999997 7888853221100 00111222221 1123443 68899999999
Q ss_pred cCCEEEEeeccccccCC-Cccc--CcCC-CCCCCCCcccCCCCCc----ccC--CCCCCCCCCHHHHHHHHHHHHHHHHH
Q 004253 399 LGLLVLMDIVHSHASNN-VLDG--LNMF-DGTDGHYFHSGSRGYH----WMW--DSRLFNYGSWEVLRFLLSNARWWLEE 468 (765)
Q Consensus 399 ~GI~VIlDvV~NH~~~~-~~~~--~~~f-~g~~~~yf~~~~~g~~----~~w--~~~~ln~~~~~v~~~i~~~l~~W~~e 468 (765)
+|++|++-+.+. +..+ +... ...+ .+....||-.+..|.. ..| .+..+|+.||++++...+.++.++++
T Consensus 97 ~G~kv~l~v~P~-i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~~ 175 (340)
T cd06597 97 QGVKVLLWQIPI-IKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRRYLVDE 175 (340)
T ss_pred CCCEEEEEecCc-cccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHHHHHHHHh
Confidence 999999865542 2111 1000 0001 1122234443333211 123 34679999999999999999999988
Q ss_pred cCCcEEEecccccc
Q 004253 469 YKFDGFRFDGVTSM 482 (765)
Q Consensus 469 ~gvDGFRfD~v~~m 482 (765)
+|||||.+|.....
T Consensus 176 ~Gidg~w~D~~E~~ 189 (340)
T cd06597 176 LGIDGFKTDGGEHV 189 (340)
T ss_pred cCCcEEEecCCCcc
Confidence 99999999987643
No 65
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=97.40 E-value=0.0005 Score=75.33 Aligned_cols=137 Identities=15% Similarity=0.135 Sum_probs=86.0
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEECCcccCCCCCCCCCcc-ccccCCCC-CCCCHHHHHHHHHHHhhcCCEEEEeeccc
Q 004253 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHV-TNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~-~~~~a~~~-~~Gt~~efk~LV~~aH~~GI~VIlDvV~N 410 (765)
+-..+. +.++.+++.|| ++|+|- ..-.....++||.. .+ |..++ +|- +.++||+++|++|++|++-+. .
T Consensus 21 s~~~v~-~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i~-P 93 (317)
T cd06594 21 GTDKVL-EALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTYIN-P 93 (317)
T ss_pred CHHHHH-HHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEEec-C
Confidence 556676 68899999987 788885 32111112344421 12 23333 553 478999999999999999554 4
Q ss_pred cccCCCcccCcCCCCCCCCCcccCCCC-----CcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccc
Q 004253 411 HASNNVLDGLNMFDGTDGHYFHSGSRG-----YHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (765)
Q Consensus 411 H~~~~~~~~~~~f~g~~~~yf~~~~~g-----~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~ 480 (765)
++..+.... .-++....||.....| ..|.+....+|+.||++++...+.++..+.++|||||-+|.-.
T Consensus 94 ~v~~~~~~~--y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 166 (317)
T cd06594 94 YLADDGPLY--YEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGE 166 (317)
T ss_pred ceecCCchh--HHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCC
Confidence 444332110 0112223344433322 2223344679999999999999999988777999999999643
No 66
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.38 E-value=0.0039 Score=70.14 Aligned_cols=168 Identities=16% Similarity=0.157 Sum_probs=94.7
Q ss_pred HhhHhhhhhHHHHcCCCEEEECCcccC---CCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecccccc
Q 004253 337 ANFRDDVLPRIKRLGYNAVQIMAVQEH---SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (765)
Q Consensus 337 ~~~~~~~L~yLk~LGvt~I~L~Pi~e~---~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~ 413 (765)
..+. +.++.++++||+.+.|=-=+-. ....+.|. +..-..+| |+-|+.|++.+|++||+.=|-+-+--++
T Consensus 58 ~~i~-~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~Gd----W~~~~~kF--P~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 58 EKIL-ELADAAAELGYEYFVIDDGWFGGRDDDNAGLGD----WEPDPKKF--PNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HHHH-HHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSB----ECBBTTTS--TTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred HHHH-HHHHHHHHhCCEEEEEcCccccccCCCcccCCc----eeEChhhh--CCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 3444 5788889999999876322211 11112232 22223466 4569999999999999999999776655
Q ss_pred CCCcccCcCCCCCCCCCcccCCCCCcc-cCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCcccc
Q 004253 414 NNVLDGLNMFDGTDGHYFHSGSRGYHW-MWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVA 492 (765)
Q Consensus 414 ~~~~~~~~~f~g~~~~yf~~~~~g~~~-~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~ 492 (765)
.++. .+. ..+.|.......... ......||+.+|+|+++|.+.+.-.+.++|||.|.+|....+...
T Consensus 131 ~~S~----l~~-~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~------- 198 (394)
T PF02065_consen 131 PDSD----LYR-EHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEA------- 198 (394)
T ss_dssp SSSC----HCC-SSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS--------
T ss_pred chhH----HHH-hCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCC-------
Confidence 4431 111 122233221111111 111235999999999999999999999999999999987655211
Q ss_pred ccCCCCcccCccCChhHHHH---HHHHHHHHhhcCCCceEEe
Q 004253 493 FTGNYSEYFGFATDVDAVVY---LMLVNDMIHGLYPEAVSIG 531 (765)
Q Consensus 493 f~~~~~~~~g~~~d~~a~~~---l~~~~~~v~~~~p~~i~ia 531 (765)
++.. .......+ +-++-+.+++.+|++++-.
T Consensus 199 ----~~~~----~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~ 232 (394)
T PF02065_consen 199 ----GSPS----LPEGYHRYVLGLYRLLDRLRARFPDVLIEN 232 (394)
T ss_dssp ----SSTT----S-GHHHHHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred ----CCCC----chHHHHHHHHHHHHHHHHHHHhCCCcEEEe
Confidence 0000 00011122 2356677788899977644
No 67
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=97.27 E-value=0.0044 Score=67.57 Aligned_cols=174 Identities=12% Similarity=0.170 Sum_probs=101.8
Q ss_pred CHHhhHhhhhhHHHHcC--CCEEEECCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 335 TYANFRDDVLPRIKRLG--YNAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LG--vt~I~L~Pi~e~~~~~~~GY~~~~~~a~~-~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
+-..+. +.+..+++.| +++|+|=.=+.. +|.-.+ |..+ .+|-. .++||+++|++|++|++-+.+ +
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~~~lD~~w~~------~~~~~~-f~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~ 89 (308)
T cd06593 22 DEEEVN-EFADGMRERNLPCDVIHLDCFWMK------EFQWCD-FEFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-Y 89 (308)
T ss_pred CHHHHH-HHHHHHHHcCCCeeEEEEeccccc------CCccee-eEECcccCCC---HHHHHHHHHHCCCeEEEEecC-C
Confidence 445565 6889999999 566776543221 121123 3333 47754 689999999999999999875 4
Q ss_pred ccCCCcccCcCC-CCCCCCCcccCCCCCc---ccC--CCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEeccccccccc
Q 004253 412 ASNNVLDGLNMF-DGTDGHYFHSGSRGYH---WMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYT 485 (765)
Q Consensus 412 ~~~~~~~~~~~f-~g~~~~yf~~~~~g~~---~~w--~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~ 485 (765)
++.+.. .| .+....||-....+.. ..| ....+|+.||++++++.+.++.+++ +|||||-+|....+...
T Consensus 90 i~~~~~----~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gid~~~~D~~e~~p~~ 164 (308)
T cd06593 90 IAQKSP----LFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MGVDCFKTDFGERIPTD 164 (308)
T ss_pred CCCCch----hHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hCCcEEecCCCCCCCcc
Confidence 544321 11 1112233332222111 112 2356899999999999999999887 89999999987654321
Q ss_pred ccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCC--ceEEee
Q 004253 486 HHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPE--AVSIGE 532 (765)
Q Consensus 486 ~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~--~i~iaE 532 (765)
.. .+.+.- .....+.-++.+-+.+.+.+++..++ .+++.-
T Consensus 165 ~~----~~~g~~---~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~R 206 (308)
T cd06593 165 VV----YYDGSD---GEKMHNYYALLYNKAVYEATKEVKGEGEAVVWAR 206 (308)
T ss_pred cc----ccCCCC---cceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Confidence 00 000000 00112333445666666777766664 455553
No 68
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.21 E-value=0.0019 Score=70.32 Aligned_cols=128 Identities=22% Similarity=0.414 Sum_probs=83.0
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEECCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~-~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
+-..+. +.++.++++|| +.|+|=--+. ..+| + |..+ .+|- +.++||+++|++|+++++=+-+ +
T Consensus 28 s~~~v~-~~~~~~~~~~iP~d~i~iD~~w~----~~~g----~-f~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~P-~ 93 (303)
T cd06592 28 NQETVL-NYAQEIIDNGFPNGQIEIDDNWE----TCYG----D-FDFDPTKFP---DPKGMIDQLHDLGFRVTLWVHP-F 93 (303)
T ss_pred CHHHHH-HHHHHHHHcCCCCCeEEeCCCcc----ccCC----c-cccChhhCC---CHHHHHHHHHHCCCeEEEEECC-e
Confidence 445565 58889999995 6776642221 1122 2 2333 3664 4789999999999999998877 3
Q ss_pred ccCCCcccCcCC-CCCCCCCcccCCCC----CcccC--CCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccc
Q 004253 412 ASNNVLDGLNMF-DGTDGHYFHSGSRG----YHWMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (765)
Q Consensus 412 ~~~~~~~~~~~f-~g~~~~yf~~~~~g----~~~~w--~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~ 480 (765)
++.+.. .| .+....||-....| ....| ....+|+.||++++++.+.++..+.++|||||-+|...
T Consensus 94 i~~~s~----~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 94 INTDSE----NFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred eCCCCH----HHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCC
Confidence 433221 11 12223344333322 01112 23568999999999999999999988999999999754
No 69
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.0012 Score=77.98 Aligned_cols=81 Identities=21% Similarity=0.355 Sum_probs=66.3
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCC------CHHHHHHHHHHHhh-cCCEEEEe
Q 004253 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG------TPDDLKSLIDKAHE-LGLLVLMD 406 (765)
Q Consensus 334 Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~G------t~~efk~LV~~aH~-~GI~VIlD 406 (765)
|-+..-. .+|.-+|+.|+|.|++.||+|-... +--|...|-..+++.|. +.+|.++||..||+ -||--|-|
T Consensus 139 Gpl~eWe-prL~va~e~gYNmIHfTPlqelG~S-~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 139 GPLDEWE-PRLRVAKESGYNMIHFTPLQELGLS-RSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred CChhhhh-HHHHHHHHcCCceEeeeeHHHhccC-CCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeeh
Confidence 4444333 6899999999999999999997543 33577777777777765 68999999999996 79999999
Q ss_pred eccccccCCC
Q 004253 407 IVHSHASNNV 416 (765)
Q Consensus 407 vV~NH~~~~~ 416 (765)
||+||++.+.
T Consensus 217 vV~NHtAnns 226 (1521)
T KOG3625|consen 217 VVYNHTANNS 226 (1521)
T ss_pred hhhhccccCC
Confidence 9999999976
No 70
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=96.85 E-value=0.0035 Score=68.72 Aligned_cols=131 Identities=17% Similarity=0.232 Sum_probs=80.9
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEECCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~~-~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
+-..+. +.+..+++.+| +.|+|-.=+- . +|. -|..++ +|- +.++||+.+|++|++|++-+.+ +
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~i~lD~~~~-~-----~~~---~f~~d~~~FP---dp~~~i~~l~~~g~k~~~~~~P-~ 87 (317)
T cd06600 22 PQDKVV-EVVDIMQKEGFPYDVVFLDIHYM-D-----SYR---LFTWDPYRFP---EPKKLIDELHKRNVKLVTIVDP-G 87 (317)
T ss_pred CHHHHH-HHHHHHHHcCCCcceEEEChhhh-C-----CCC---ceeechhcCC---CHHHHHHHHHHCCCEEEEEeec-c
Confidence 445565 58888888887 7777742111 1 121 122222 553 5679999999999999996644 3
Q ss_pred ccCCCcccCcCCCCCCCCCcccCCCCC---cccC--CCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccc
Q 004253 412 ASNNVLDGLNMFDGTDGHYFHSGSRGY---HWMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (765)
Q Consensus 412 ~~~~~~~~~~~f~g~~~~yf~~~~~g~---~~~w--~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~ 480 (765)
+..+. .......+....||.....+. ...| ....+|+.||++++...+.++..+.++|||||-+|...
T Consensus 88 i~~~~-~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 88 IRVDQ-NYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred ccCCC-CChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCC
Confidence 33221 000011222334444333221 1122 23468999999999999999999877999999999754
No 71
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.84 E-value=0.026 Score=61.61 Aligned_cols=173 Identities=23% Similarity=0.235 Sum_probs=97.5
Q ss_pred hhhhhHHHHcCCCEEEECCcccCC-CCCCCCCccccccC--CCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccCCCc
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHS-YYASFGYHVTNFFA--PSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVL 417 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~-~~~~~GY~~~~~~a--~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~ 417 (765)
++.|+.|++-|+|+|-+ +.- .++.-.|....-.+ +...-..+.|+++|++.||++||.+|.=||.=- +..
T Consensus 16 ~~~~~~i~~t~lNavVI----DvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~Fk---D~~ 88 (316)
T PF13200_consen 16 DKLLDLIKRTELNAVVI----DVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFK---DPV 88 (316)
T ss_pred HHHHHHHHhcCCceEEE----EEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEec---ChH
Confidence 47899999999999954 322 12222333221111 111111257999999999999999999998411 110
Q ss_pred ccCcCCCCCCCCCcccCCCCCcccC--CCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccC
Q 004253 418 DGLNMFDGTDGHYFHSGSRGYHWMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTG 495 (765)
Q Consensus 418 ~~~~~f~g~~~~yf~~~~~g~~~~w--~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~ 495 (765)
.....+.|-.....|..|.- +..-+|--+++|++|+++.++-..+ .|||.+.||-+-.= +.+.....
T Consensus 89 -----la~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~-~GFdEIqfDYIRFP---~~~~~~~l-- 157 (316)
T PF13200_consen 89 -----LAEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAK-LGFDEIQFDYIRFP---DEGRLSGL-- 157 (316)
T ss_pred -----HhhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHH-cCCCEEEeeeeecC---CCCccccc--
Confidence 00001111111122221110 1234778899999999999999887 89999999976432 11111111
Q ss_pred CCCcccCccCChhHH-HHHHHHHHHHhhcCCCceEEeec
Q 004253 496 NYSEYFGFATDVDAV-VYLMLVNDMIHGLYPEAVSIGED 533 (765)
Q Consensus 496 ~~~~~~g~~~d~~a~-~~l~~~~~~v~~~~p~~i~iaE~ 533 (765)
.|........-.+++ +|++.+++.++.. ++.+=+..
T Consensus 158 ~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~--~v~vSaDV 194 (316)
T PF13200_consen 158 DYSENDTEESRVDAITDFLAYAREELHPY--GVPVSADV 194 (316)
T ss_pred ccCCCCCcchHHHHHHHHHHHHHHHHhHc--CCCEEEEe
Confidence 111111111134555 8999999999765 44444443
No 72
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=96.67 E-value=0.0063 Score=66.78 Aligned_cols=131 Identities=14% Similarity=0.225 Sum_probs=77.8
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEECCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~-~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
+-..+. +.++.+++.|| ++|+|= ..+....|+ .-|..+ .+|-. .++||+.+|++|++||+-+. -+
T Consensus 22 ~~~ev~-~~~~~~~~~~iP~d~i~lD----~~~~~~~~~---~~f~~d~~~FPd---p~~mi~~L~~~G~kv~~~i~-P~ 89 (319)
T cd06591 22 TQEELL-DVAKEYRKRGIPLDVIVQD----WFYWPKQGW---GEWKFDPERFPD---PKAMVRELHEMNAELMISIW-PT 89 (319)
T ss_pred CHHHHH-HHHHHHHHhCCCccEEEEe----chhhcCCCc---eeEEEChhhCCC---HHHHHHHHHHCCCEEEEEec-CC
Confidence 444555 57888888765 777663 111111121 113333 35644 57999999999999999554 34
Q ss_pred ccCCCcccCcCCCCCCCCCcccCCCCC--cccCC--CCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccc
Q 004253 412 ASNNVLDGLNMFDGTDGHYFHSGSRGY--HWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (765)
Q Consensus 412 ~~~~~~~~~~~f~g~~~~yf~~~~~g~--~~~w~--~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~ 480 (765)
+..+... .-++....||.....+. ...|. ...+|+.||++++...+.++..+.++|||||-+|...
T Consensus 90 v~~~~~~---y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 90 FGPETEN---YKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred cCCCChh---HHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCC
Confidence 4432210 00111223443332221 12232 3579999999999988877766666999999999864
No 73
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=96.56 E-value=0.045 Score=57.88 Aligned_cols=145 Identities=18% Similarity=0.183 Sum_probs=81.8
Q ss_pred hHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCC--CHHHHHHHHHHHhhcCCEEEEeeccccccCCC
Q 004253 339 FRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG--TPDDLKSLIDKAHELGLLVLMDIVHSHASNNV 416 (765)
Q Consensus 339 ~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~G--t~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~ 416 (765)
.+++.++.++++|+|+|-|.--.+......-+| .+. ..+.|+++|+.|+++||.||+|+--.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~----------~~~~~~~~~ld~~v~~a~~~gi~vild~h~~------ 85 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY----------NYDETYLARLDRIVDAAQAYGIYVILDLHNA------ 85 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT----------SBTHHHHHHHHHHHHHHHHTT-EEEEEEEES------
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc----------cccHHHHHHHHHHHHHHHhCCCeEEEEeccC------
Confidence 445789999999999999865432111001111 122 25899999999999999999997543
Q ss_pred cccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHc----CCcEEEecccccccccccCcccc
Q 004253 417 LDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEY----KFDGFRFDGVTSMMYTHHGLQVA 492 (765)
Q Consensus 417 ~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~----gvDGFRfD~v~~m~~~~~g~~~~ 492 (765)
+.|.. ............+++.+.++.++..| .|-|| +...-. ......
T Consensus 86 -----------~~w~~-----------~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~--el~NEP----~~~~~~ 137 (281)
T PF00150_consen 86 -----------PGWAN-----------GGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGW--ELWNEP----NGGNDD 137 (281)
T ss_dssp -----------TTCSS-----------STSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEE--ESSSSG----CSTTST
T ss_pred -----------ccccc-----------cccccccchhhHHHHHhhhhhhccccCCCCcEEEE--EecCCc----cccCCc
Confidence 01100 01112233445666777777777777 33333 221111 000000
Q ss_pred ccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeec
Q 004253 493 FTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGED 533 (765)
Q Consensus 493 f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~ 533 (765)
..+ .......-..+.+.+.+.|++..|+.+++.+.
T Consensus 138 --~~w----~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 138 --ANW----NAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp --TTT----SHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred --ccc----ccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 000 00011222368899999999999998888776
No 74
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=96.56 E-value=0.021 Score=72.85 Aligned_cols=142 Identities=18% Similarity=0.203 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhhcCCEE--EEeeccccccCCCcc-------cCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHH--HH
Q 004253 387 DDLKSLIDKAHELGLLV--LMDIVHSHASNNVLD-------GLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE--VL 455 (765)
Q Consensus 387 ~efk~LV~~aH~~GI~V--IlDvV~NH~~~~~~~-------~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~--v~ 455 (765)
.+++++-+.|+++||+| |-|+.+.-......- .+..--|.+|.+|... |. .|+.+.+|+..-. --
T Consensus 932 ~Q~~~~~~~A~~~Gm~iGl~gDLpvgv~~dsadvWa~~~~f~l~~~~GaPPD~fs~~--GQ--~WG~P~y~w~~l~~~gy 1007 (1221)
T PRK14510 932 RQWQAAKDYAQEQGLSIGFYGDLAIGVAPDGADAWAERSCFALDVSIGAPPDYFNPE--GQ--NWGLPPYDPRALRRDGY 1007 (1221)
T ss_pred HHHHHHHHHHHHCCCEEeEEeeeeeeeCCCcHHHhcCHHHhcCCCccCCCCCcCCcc--cc--cCCCcCcCHHHHHhcCc
Confidence 56788889999999999 999986433222100 1122347777888543 32 4777777653211 11
Q ss_pred HHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeeccC
Q 004253 456 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 535 (765)
Q Consensus 456 ~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~ 535 (765)
+..++-++.-++ ++|++|+|.+..+...= -++.+-+ ...|.......-+++..+....+. -++.+|||+..
T Consensus 1008 ~~w~~rlr~~~~--~~~~lRIDH~~G~~r~W-~IP~~~~----a~~G~~v~~P~~~l~~~l~~e~~r--~~~~vIgEDLG 1078 (1221)
T PRK14510 1008 RWFIERIRANMR--HAGALRIDHVRGLERLF-EVPQGAS----AKEGAYLKGPGEELFGQVALESQR--AQCPVIGEDLG 1078 (1221)
T ss_pred HHHHHHHHHHHH--hCCeEEeccHHhhHHhe-eCCCCCC----CCCCeEEECCHHHHHHHHHHHhCc--cCCcEEEeeCC
Confidence 345556665555 89999999876543210 0110000 011112222233445544443332 26899999986
Q ss_pred CCCccc
Q 004253 536 GMPTFC 541 (765)
Q Consensus 536 ~~p~~~ 541 (765)
.-|...
T Consensus 1079 ~vp~~v 1084 (1221)
T PRK14510 1079 TIPSGV 1084 (1221)
T ss_pred cCCHHH
Confidence 555433
No 75
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.50 E-value=0.0096 Score=65.26 Aligned_cols=131 Identities=12% Similarity=0.110 Sum_probs=78.7
Q ss_pred HhhHhhhhhHHHHcCC--CEEEECCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHhhcCCEEEEeecccccc
Q 004253 337 ANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (765)
Q Consensus 337 ~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~-~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~ 413 (765)
..+. +.++.+++.|| ++|+|-+=+.... |-. ..-|..+ .+|- +.++||+++|++|++|++-+.+. +.
T Consensus 29 ~~v~-~~~~~~r~~~iP~d~i~ld~~~~~~~----~~~-~~~f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P~-i~ 98 (317)
T cd06599 29 EALL-EFIDKCREHDIPCDSFHLSSGYTSIE----GGK-RYVFNWNKDRFP---DPAAFVAKFHERGIRLAPNIKPG-LL 98 (317)
T ss_pred HHHH-HHHHHHHHcCCCeeEEEEeccccccC----CCc-eeeeecCcccCC---CHHHHHHHHHHCCCEEEEEeCCc-cc
Confidence 3454 57888999887 7787743111000 100 0113333 4664 57799999999999999966543 33
Q ss_pred CCCcccCcCCCCCCCCCcccCCC------CCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccc
Q 004253 414 NNVLDGLNMFDGTDGHYFHSGSR------GYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (765)
Q Consensus 414 ~~~~~~~~~f~g~~~~yf~~~~~------g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~ 480 (765)
.+.. ..-.+....||-.... +..|......+|+.||++++...+.++.-+.+.|||||-+|...
T Consensus 99 ~~~~---~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 99 QDHP---RYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred CCCH---HHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 2221 0001122234432221 12222233569999999999999999777767999999999754
No 76
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=96.44 E-value=0.031 Score=66.71 Aligned_cols=134 Identities=13% Similarity=0.017 Sum_probs=82.7
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCC--CCccccccCCC-CCCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASF--GYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~--GY~~~~~~a~~-~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
+-+.+. ..|+.||++|+|+|+|-.+.+..+++.+ =|-|..+..+- +-| +-+.-.+ +|++|++|-.-+.+--
T Consensus 332 q~~~L~-~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f---~~~aw~l--~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 332 QDRNID-VLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLF---NRVAWQL--RTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHH-HHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCc---CHHHHHH--HHhhCCEEEEecccee
Confidence 345565 6999999999999999887665443322 13333332221 111 2222233 9999999988776543
Q ss_pred ccCCCc-ccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEeccccc
Q 004253 412 ASNNVL-DGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 481 (765)
Q Consensus 412 ~~~~~~-~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~ 481 (765)
++-+.. .....++ ....+...++.|..+ +|-.+|+||+.|.+...-.+..|.|||+-||-=..
T Consensus 406 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~r-l~P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd~~ 469 (671)
T PRK14582 406 FDLDPTLPRVKRLD------TGEGKAQIHPEQYRR-LSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDAV 469 (671)
T ss_pred eccCCCcchhhhcc------ccCCccccCCCCCcC-CCCCCHHHHHHHHHHHHHHHHhCCCceEEeccccc
Confidence 332110 0000010 001111235556445 99999999999999999999989999999986433
No 77
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=96.42 E-value=0.016 Score=64.16 Aligned_cols=134 Identities=13% Similarity=0.123 Sum_probs=79.6
Q ss_pred HHhhHhhhhhHHHHcCC--CEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecccccc
Q 004253 336 YANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (765)
Q Consensus 336 ~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~ 413 (765)
-..+. +.+..+++.|| +.|+|=.=+- ..+++|-++. .+|-.+.. ++||+++|++|++|++-+.+ ++.
T Consensus 23 ~~~v~-~~~~~~r~~~iP~d~i~lD~~~~-~~~~~f~~d~-------~~FPdp~~-~~mi~~L~~~G~k~~~~i~P-~v~ 91 (339)
T cd06602 23 VDEVK-EVVENMRAAGIPLDVQWNDIDYM-DRRRDFTLDP-------VRFPGLKM-PEFVDELHANGQHYVPILDP-AIS 91 (339)
T ss_pred HHHHH-HHHHHHHHhCCCcceEEECcccc-cCccceeccc-------ccCCCccH-HHHHHHHHHCCCEEEEEEeC-ccc
Confidence 34555 57888888887 6777632111 1111121222 24433211 89999999999999997654 333
Q ss_pred CCC-cccCcCC-CCCCCCCcccCCCCC-----cccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccc
Q 004253 414 NNV-LDGLNMF-DGTDGHYFHSGSRGY-----HWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (765)
Q Consensus 414 ~~~-~~~~~~f-~g~~~~yf~~~~~g~-----~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~ 480 (765)
.+. ......| ++....||-.+..|. .|......+|+.||++++...+.++.+++++|||||-+|...
T Consensus 92 ~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 92 ANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred cCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 221 0000111 122233444333321 122223558999999999999999999988999999999754
No 78
>PLN02950 4-alpha-glucanotransferase
Probab=96.40 E-value=0.081 Score=65.53 Aligned_cols=170 Identities=14% Similarity=0.148 Sum_probs=99.0
Q ss_pred cEEEEEecCC---cCeEEEEe---ecCCCCCC-ccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeCCCCccccCC
Q 004253 204 GITYREWAPG---AKSASLIG---DFNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIP 276 (765)
Q Consensus 204 gv~FrvWAP~---A~~V~L~g---dFN~w~~~-~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~~~~~~~~~ 276 (765)
.++|+|-+|+ -++|+|+| +..+|+.. ..+|.......|++.+.-.. +.. .-.|||.+...++..
T Consensus 154 ~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~-~~~----~~EYKyv~~~~~g~v---- 224 (909)
T PLN02950 154 VVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPK-SDF----PIKYKYALQTAEGLV---- 224 (909)
T ss_pred eEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecC-CCc----eEEEEEEEEcCCCce----
Confidence 3899999994 57899998 45689864 46787777899999986422 111 247888876544321
Q ss_pred ccc---eeeccCCCCCCCCcEE-eCCCccccccccCCCCCCCCCceEEEeecCCCCCC--CCCCCHHhhHhhhhhHHHHc
Q 004253 277 AWI---KFSVQAPGEIPYNGIY-YDPPEEEKYVFQHPQPKKPKSLRIYEAHVGMSSTE--PIINTYANFRDDVLPRIKRL 350 (765)
Q Consensus 277 ~~~---~~~~~~~~~~~~~~~~-~dp~~~~~~~~~~~~~~~~~~~vIYE~hv~~~s~~--~~~Gt~~~~~~~~L~yLk~L 350 (765)
.|- +.....+........+ ..+. ..++. +.....-++- |+=+.... -++|+|.++. +.++.+++.
T Consensus 225 ~WE~g~NR~~~~p~~~~~~~~~~~~~~----~~~~~--~~~R~~Gi~~--~l~SLrS~~s~GIGDf~dl~-~~id~~a~~ 295 (909)
T PLN02950 225 SLELGVNRELSLDSSSGKPPSYIVASD----GAFRE--MPWRGAGVAV--PVFSIRSEEDVGVGEFLDLK-LLVDWAVKS 295 (909)
T ss_pred EEeeCCCceeecCcccCCceEEEeccc----ccccC--CCccceEEEE--ecccCCCCCCCCeeCHHHHH-HHHHHHHHc
Confidence 110 1111111111011111 1110 01111 1111111111 11111112 2789999888 699999999
Q ss_pred CCCEEEECCcccCCCCC----CCCCccccccCCCCCCCCHHHHHH
Q 004253 351 GYNAVQIMAVQEHSYYA----SFGYHVTNFFAPSSRCGTPDDLKS 391 (765)
Q Consensus 351 Gvt~I~L~Pi~e~~~~~----~~GY~~~~~~a~~~~~Gt~~efk~ 391 (765)
|.+.|||+|+.+....+ +--|.+.+=|+.+|-|=++++|-+
T Consensus 296 G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l~~l~~ 340 (909)
T PLN02950 296 GLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALSE 340 (909)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCHHHHHh
Confidence 99999999998865322 346888999999998888766643
No 79
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=96.35 E-value=0.036 Score=64.84 Aligned_cols=170 Identities=19% Similarity=0.312 Sum_probs=85.9
Q ss_pred hhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCC------------CCCCCHHHHHHHHHHHhhcCCEEEEeecc
Q 004253 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS------------SRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (765)
Q Consensus 342 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~------------~~~Gt~~efk~LV~~aH~~GI~VIlDvV~ 409 (765)
+.|+.|++.-||.||.- .|-|.-...+..+ .|-=..+-+|.+|++||+.||++|.=.-.
T Consensus 122 ~~i~~L~~yHIN~~QFY---------DW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmi 192 (559)
T PF13199_consen 122 AEIDQLNRYHINGLQFY---------DWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMI 192 (559)
T ss_dssp HHHHHHHHTT--EEEET---------S--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred HHHHHHHhhCcCeEEEE---------eeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhh
Confidence 68999999999999962 2333322222222 22223789999999999999999864333
Q ss_pred ccccCCCcccCcCCCCCCCCC--cccCCCC------CcccCCC--CCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEeccc
Q 004253 410 SHASNNVLDGLNMFDGTDGHY--FHSGSRG------YHWMWDS--RLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 479 (765)
Q Consensus 410 NH~~~~~~~~~~~f~g~~~~y--f~~~~~g------~~~~w~~--~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v 479 (765)
.-+..+. ..+|..+.| |...... ....|.+ -.+|.+|++=|++|+......++++|+|||.+|.+
T Consensus 193 yaa~~~~-----~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~ 267 (559)
T PF13199_consen 193 YAANNNY-----EEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQL 267 (559)
T ss_dssp SEEETT-------S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S
T ss_pred hccccCc-----ccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeecc
Confidence 2222221 012222222 2211110 0112333 46889999999999999999999999999999998
Q ss_pred ccccccccCccccccCCCCcccCccC-ChhHHHHHHHHHHHHhhcCCCceEEeeccCCCCc
Q 004253 480 TSMMYTHHGLQVAFTGNYSEYFGFAT-DVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPT 539 (765)
Q Consensus 480 ~~m~~~~~g~~~~f~~~~~~~~g~~~-d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~~~p~ 539 (765)
...... + .+-|... ++.. .| ..+...+++..|+..++--.+++++.
T Consensus 268 G~~~~~-------~-----d~~G~~i~~l~~-~y-~~Fi~~~K~~~~~k~lv~N~V~~~g~ 314 (559)
T PF13199_consen 268 GNRGTV-------Y-----DYDGNKIYDLSD-GY-ASFINAMKEALPDKYLVFNAVSGYGI 314 (559)
T ss_dssp --EEEE-------G-----GTT---GGECHH-HH-HHHHHHHHHHSTTSEEEEB-GGGTTH
T ss_pred CCCCcc-------c-----cCCCCCchhhHH-HH-HHHHHHHHHhCCCCceeeeccCccch
Confidence 643110 1 1112222 2222 12 22333445555777777766766654
No 80
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=96.19 E-value=0.0042 Score=54.63 Aligned_cols=45 Identities=16% Similarity=0.078 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHcCCCCCCC--------------eEEEEEcCCCEEEEEEecCCcccccc
Q 004253 713 FDRAMQHLEEKYGFMTSEH--------------QYVSRKDQGDRGGMMTDLIPSWYMRQ 757 (765)
Q Consensus 713 f~r~Li~lRk~~~~L~~~~--------------~~i~~~~~~~~vlvf~r~sp~~~~~~ 757 (765)
|+|+||+||+++|+|..+. .+.++.++++.++++.||++..+.++
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~~~~~~ 59 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSDEPVTVP 59 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS-EEEE
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCCCcEEcc
Confidence 7999999999999997664 11234457889999999999988887
No 81
>PRK10426 alpha-glucosidase; Provisional
Probab=96.16 E-value=0.046 Score=65.43 Aligned_cols=135 Identities=15% Similarity=0.141 Sum_probs=83.6
Q ss_pred HhhHhhhhhHHHHcCC--CEEEECCcccCCCCCCCCCccc-cccCCC-CCCCCHHHHHHHHHHHhhcCCEEEEeeccccc
Q 004253 337 ANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVT-NFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (765)
Q Consensus 337 ~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~-~~~a~~-~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~ 412 (765)
..+. +.+..+++.|| ++|||- -+....+.++|...- || ..+ .+|- +.++||+++|++|++|++-+-+.-
T Consensus 221 ~~v~-~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~-~~d~~~FP---dp~~mi~~L~~~G~k~v~~i~P~v- 293 (635)
T PRK10426 221 EVVQ-KKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNW-KWDSERYP---QLDSRIKQLNEEGIQFLGYINPYL- 293 (635)
T ss_pred HHHH-HHHHHHHHcCCCeeEEEEe-cccccccccccccccccc-eEChhhCC---CHHHHHHHHHHCCCEEEEEEcCcc-
Confidence 3455 68889999996 889985 221111122332221 21 222 3443 578899999999999999876532
Q ss_pred cCCCcccCcCC-CCCCCCCcccCCCCC-----cccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccc
Q 004253 413 SNNVLDGLNMF-DGTDGHYFHSGSRGY-----HWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 482 (765)
Q Consensus 413 ~~~~~~~~~~f-~g~~~~yf~~~~~g~-----~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m 482 (765)
..+. ..| ++....||..+..|. .|.+....+|+.||++++...+.++..+.++|||||-.|.-..+
T Consensus 294 ~~~~----~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~ 365 (635)
T PRK10426 294 ASDG----DLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYL 365 (635)
T ss_pred CCCC----HHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCC
Confidence 2211 011 122234444333321 12334467999999999999999887777799999999986643
No 82
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=96.09 E-value=0.094 Score=63.19 Aligned_cols=187 Identities=16% Similarity=0.185 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhhcCC--EEEEeeccccccC--CCcc-----cCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHH--HH
Q 004253 387 DDLKSLIDKAHELGL--LVLMDIVHSHASN--NVLD-----GLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE--VL 455 (765)
Q Consensus 387 ~efk~LV~~aH~~GI--~VIlDvV~NH~~~--~~~~-----~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~--v~ 455 (765)
++++++-+.|+++|| ++|-|+.+--... +... .+..--|.+|.+|... |. .|+.+.+|+..-. =-
T Consensus 355 ~Ql~~~~~~A~~~Gm~igL~gDLpvgv~~dsaDvWa~~~~F~l~~~~GaPPD~fs~~--GQ--~WG~P~y~w~~l~~~gy 430 (695)
T PRK11052 355 SQFAACWQLSQQLGMPIGLYRDLAVGVAEGGAETWCDRELYCLKASVGAPPDILGPL--GQ--NWGLPPMDPHVLQARAY 430 (695)
T ss_pred HHHHHHHHHHHHCCCceeEEEeeeceECCCcHHHhCCHHHhcCCCcCCCCCCcCCcc--cc--cCCCcCcCHHHHHhcCc
Confidence 678888999999999 6799998633222 2100 1122346777777643 22 4777777653211 01
Q ss_pred HHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeeccC
Q 004253 456 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 535 (765)
Q Consensus 456 ~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~ 535 (765)
+..++-++.-++ ++|++|+|.+..+...- -++.+-+ ...|.....+.-+++..+ ++.+..+++.+|||+..
T Consensus 431 ~ww~~rlr~~~~--~~g~lRIDH~~Gl~rlW-~IP~g~~----a~~G~yv~~P~~~ll~~l--ales~~~~~~vIgEDLG 501 (695)
T PRK11052 431 QPFIDLLRANMQ--HCGALRIDHVMSLLRLW-WIPYGET----ADQGAYVHYPVDDLLAIL--ALESQRHRCMVIGEDLG 501 (695)
T ss_pred HHHHHHHHHHHH--hCCEEEecchhhhheee-ecCCCCC----CCCCeeEeCCHHHHHHHH--HHHHhcCCCCEEEeeCC
Confidence 234455555555 79999999876543210 0111001 111222222222333322 12344468999999986
Q ss_pred CCCcccccccc-CC-cccchhhhHHHHHHHHHHHhhhhhhhhhhhhHhhhccccccccceecccCcccccc
Q 004253 536 GMPTFCIPVQD-GG-VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALV 604 (765)
Q Consensus 536 ~~p~~~~~~~~-gg-~gfD~~l~~~~~d~~~~~lk~~~~~~~~~~~~~~l~~~~~~~~~v~f~enHD~~r~ 604 (765)
.-|...+.... -| +|+.-- . +. .+.+ +. ......|+.++|.|+.+||++++
T Consensus 502 ~Vp~~Vr~~l~~~gi~g~~Vl-~----------Fe-~~~~---~~---~~~P~~y~~~sva~t~THD~pTl 554 (695)
T PRK11052 502 TVPVEIVGKLRDSGVYSYKVL-Y----------FE-NDEE---GG---FRAPAAYPEQSMATLTTHDLPTL 554 (695)
T ss_pred CCCHHHHHHHHHcCCCCcEEE-E----------ec-ccCC---CC---CCCcccCcCCeEEECCCCCChhH
Confidence 55443322211 11 111100 0 00 0000 00 11224567789999999999876
No 83
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=96.08 E-value=0.053 Score=62.56 Aligned_cols=88 Identities=18% Similarity=0.341 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhcCCEEEEeeccccccCCCc-cc------CcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHH
Q 004253 387 DDLKSLIDKAHELGLLVLMDIVHSHASNNVL-DG------LNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLL 459 (765)
Q Consensus 387 ~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~-~~------~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~ 459 (765)
.++.++=.-|+++||.+|.|+.+.-...... +. .+.-.|.+|.+|.... -.|+.+..|+.. ...
T Consensus 210 ~Q~~~~k~~A~~~~I~i~gDLpv~va~~saDvW~~~~~f~~~~~~GaPPD~f~~~G----Q~Wg~p~yn~~~-----l~~ 280 (520)
T COG1640 210 RQLAALKRYANDMGIGIIGDLPVGVAQDSADVWANPEYFCLDESAGAPPDVFNAQG----QDWGLPPYNPEA-----LKK 280 (520)
T ss_pred HHHHHHHHHHHhcCceEeecccceecCCchhhhcCcccccccccCCCCCCcccccc----cccCCCCCCHHH-----HHH
Confidence 4556666677789999999998654432211 11 1111355556664322 246666555432 223
Q ss_pred HHHHHHHHHc-----CCcEEEeccccccc
Q 004253 460 SNARWWLEEY-----KFDGFRFDGVTSMM 483 (765)
Q Consensus 460 ~~l~~W~~e~-----gvDGFRfD~v~~m~ 483 (765)
+.-.+|++-+ .+|+.|+|.+..+.
T Consensus 281 ~~y~wwierlr~~~~~~~~lRIDHf~Gl~ 309 (520)
T COG1640 281 DGYDWWIERLRANLKLYGILRIDHFRGLF 309 (520)
T ss_pred cccHHHHHHHHHHHHhcCeeeeeeecchh
Confidence 3344444422 78999999886553
No 84
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=96.00 E-value=0.024 Score=62.75 Aligned_cols=129 Identities=21% Similarity=0.307 Sum_probs=79.8
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEECCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~~-~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
+-..+. +.++.+++.|| ++|+|-.-+.. +|. + |..++ +|- +.++||+.+|++|++|++-+.+ |
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~i~lD~~~~~------~~~--~-f~~d~~~fP---dp~~m~~~l~~~g~~~~~~~~P-~ 87 (339)
T cd06604 22 PEEEVR-EIADEFRERDIPCDAIYLDIDYMD------GYR--V-FTWDKERFP---DPKELIKELHEQGFKVVTIIDP-G 87 (339)
T ss_pred CHHHHH-HHHHHHHHhCCCcceEEECchhhC------CCC--c-eeeccccCC---CHHHHHHHHHHCCCEEEEEEeC-c
Confidence 445555 68889999998 78887533321 121 1 23333 564 4589999999999999987654 3
Q ss_pred ccCCCcccCcCC-CCCCCCCcccCCCCC---cccC--CCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccc
Q 004253 412 ASNNVLDGLNMF-DGTDGHYFHSGSRGY---HWMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (765)
Q Consensus 412 ~~~~~~~~~~~f-~g~~~~yf~~~~~g~---~~~w--~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~ 480 (765)
+..+. ....| ++....||-....|. ...| ....+|+.||+++++..+.++..++ .|||||-+|...
T Consensus 88 v~~~~--~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~-~Gvdg~w~D~~E 159 (339)
T cd06604 88 VKVDP--GYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVD-LGVDGIWNDMNE 159 (339)
T ss_pred eeCCC--CChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhh-CCCceEeecCCC
Confidence 32111 00011 122223443332221 1122 2345899999999999999998775 999999999764
No 85
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=95.84 E-value=0.013 Score=67.06 Aligned_cols=133 Identities=20% Similarity=0.357 Sum_probs=77.4
Q ss_pred HHhhHhhhhhHHHHcCC--CEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecccccc
Q 004253 336 YANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (765)
Q Consensus 336 ~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~ 413 (765)
-..+. +.++.+++.|| ++|+|-.-+.. .+..|.++.. +| .++++||+.+|++|++|++-+.+. +.
T Consensus 42 ~~~v~-~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~-------~F---Pd~~~~~~~l~~~G~~~~~~~~P~-v~ 108 (441)
T PF01055_consen 42 QDEVR-EVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPE-------RF---PDPKQMIDELHDQGIKVVLWVHPF-VS 108 (441)
T ss_dssp HHHHH-HHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TT-------TT---TTHHHHHHHHHHTT-EEEEEEESE-EE
T ss_pred HHHHH-HHHHHHHHcCCCccceeccccccc-cccccccccc-------cc---cchHHHHHhHhhCCcEEEEEeecc-cC
Confidence 34555 68889999888 55554433221 1122222322 44 378999999999999999998873 33
Q ss_pred CCCcccCcCCC-CCCCCCcccCCCC---CcccCC--CCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccc
Q 004253 414 NNVLDGLNMFD-GTDGHYFHSGSRG---YHWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 482 (765)
Q Consensus 414 ~~~~~~~~~f~-g~~~~yf~~~~~g---~~~~w~--~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m 482 (765)
.... ....|+ +....|+.....+ ....|. ...+|+.||++++...+.++..++.+|||||-+|.....
T Consensus 109 ~~~~-~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 109 NDSP-DYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp TTTT-B-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTB
T ss_pred CCCC-cchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCcc
Confidence 2221 000000 1112334333332 111243 467999999999999999999999889999999986443
No 86
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.04 E-value=0.093 Score=56.89 Aligned_cols=129 Identities=15% Similarity=0.154 Sum_probs=72.8
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEECCcc-cCC---CCCCCCCccccccCCC-CCCCCHHHHHHHHHHHhhcCCEEEEee
Q 004253 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQ-EHS---YYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDI 407 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGv--t~I~L~Pi~-e~~---~~~~~GY~~~~~~a~~-~~~Gt~~efk~LV~~aH~~GI~VIlDv 407 (765)
+-..+. +.+..+++.|| ++|+|=-=+ ... .+. -+|. -|..+ .+|- +.++||+++|++|++|++-+
T Consensus 23 s~~ev~-~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~-~~~~---~ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 23 SDEEYL-ALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYG-SGWT---GYSWNRKLFP---DPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CHHHHH-HHHHHHHHhCCCccEEEEeccccccccccccc-CCcc---eeEEChhcCC---CHHHHHHHHHHCCCEEEEEe
Confidence 445665 58888888887 777762211 100 000 0111 12333 3563 46899999999999999988
Q ss_pred ccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEeccc
Q 004253 408 VHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 479 (765)
Q Consensus 408 V~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v 479 (765)
.+.............+... ..... ..+ +...+|+.||+.++...+.+..-+.++|||||-.|.-
T Consensus 95 ~P~~~~~~~~~~y~~~~~~--~~~~~-~~~-----~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~ 158 (292)
T cd06595 95 HPADGIRAHEDQYPEMAKA--LGVDP-ATE-----GPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQ 158 (292)
T ss_pred CCCcccCCCcHHHHHHHHh--cCCCc-ccC-----CeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCC
Confidence 7643211110000000000 00000 000 1136799999999977777766666699999999953
No 87
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=94.68 E-value=0.094 Score=61.16 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhhcCCEEEEeeccccccCCCc----------c-c-CcC-CCCCCCCCcccCCCCCcccCCCCCCCCCCHH
Q 004253 387 DDLKSLIDKAHELGLLVLMDIVHSHASNNVL----------D-G-LNM-FDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE 453 (765)
Q Consensus 387 ~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~----------~-~-~~~-f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~ 453 (765)
++++++-+.|+++||++|-|+.+--...... + . -.. .+|-+|.||... | -.|+.+.+|+..-.
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~v~~dsaDvWa~~~~F~l~~~~GaP~~agvpPd~Fs~~--G--Q~WG~P~y~w~~l~ 287 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVFVAYDSADVWADPELFCLRASAGAPKPAGLGPDYFLEQ--G--QNWGLPPYDWNVLK 287 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcceeCCCcHHHHhCHHHhCCCcccCCCCCCCCCCCccccc--C--CCCCCCCcCHHHHH
Confidence 6778888899999999999998643332210 0 0 011 344446677643 2 24777777764211
Q ss_pred --HHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCC-ceEE
Q 004253 454 --VLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPE-AVSI 530 (765)
Q Consensus 454 --v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~-~i~i 530 (765)
--+..++-++.=++ .+|++|+|.+..+... .-++.+- -....|........+++..+.... ++ +.+|
T Consensus 288 ~~gy~ww~~rlr~~~~--~~d~lRIDHf~Gf~r~-w~IP~g~---~ta~~G~wv~~Pg~~l~~~l~~e~----~~~~~vI 357 (513)
T TIGR00217 288 ARGYEWWIKRLGANMQ--YADILRIDHFRGFVSL-WWVPAGE---STAFNGAWVHYPGDDFFNILANES----KDNLKII 357 (513)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhcee-eeecCCC---CCCCCCeeEeCCHHHHHHHHHHHc----CCCCcEE
Confidence 11234445555454 8999999987544211 0011100 011112223334445555444433 33 7899
Q ss_pred eeccCCCCc
Q 004253 531 GEDVSGMPT 539 (765)
Q Consensus 531 aE~~~~~p~ 539 (765)
||+...-+.
T Consensus 358 aEDLG~v~~ 366 (513)
T TIGR00217 358 GEDLGTVPE 366 (513)
T ss_pred eeeCCCCCH
Confidence 999865444
No 88
>PRK10658 putative alpha-glucosidase; Provisional
Probab=94.63 E-value=0.043 Score=65.98 Aligned_cols=127 Identities=12% Similarity=0.252 Sum_probs=80.0
Q ss_pred hhHhhhhhHHHHcCC--CEEEECCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHhhcCCEEEEeeccccccC
Q 004253 338 NFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (765)
Q Consensus 338 ~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~-~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~ 414 (765)
.+. +.++.+++.|| ++|+|=..+-. +|+-.+| ..+ .+|- +.+.||+++|++|++|++-+.+ ++..
T Consensus 284 ~v~-~~~~~~r~~~iP~d~i~lD~~w~~------~~~~~~f-~wd~~~FP---dp~~mi~~L~~~G~k~~~~i~P-~i~~ 351 (665)
T PRK10658 284 TVN-SFIDGMAERDLPLHVFHFDCFWMK------EFQWCDF-EWDPRTFP---DPEGMLKRLKAKGLKICVWINP-YIAQ 351 (665)
T ss_pred HHH-HHHHHHHHcCCCceEEEEchhhhc------CCceeee-EEChhhCC---CHHHHHHHHHHCCCEEEEeccC-CcCC
Confidence 344 57777888887 55665432211 1211232 222 3453 4568999999999999998665 3332
Q ss_pred CCcccCcCC-CCCCCCCcccCCCCCccc---C--CCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEeccccc
Q 004253 415 NVLDGLNMF-DGTDGHYFHSGSRGYHWM---W--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 481 (765)
Q Consensus 415 ~~~~~~~~f-~g~~~~yf~~~~~g~~~~---w--~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~ 481 (765)
++ ..| ++....||.....|..+. | +...+||.||++++...+.++.+++ .|||||-.|....
T Consensus 352 ~s----~~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~Gvdgfw~D~gE~ 419 (665)
T PRK10658 352 KS----PLFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MGVDCFKTDFGER 419 (665)
T ss_pred Cc----hHHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cCCcEEEecCCce
Confidence 21 011 123344665555443322 2 3467999999999999999999887 8999999997554
No 89
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.48 E-value=0.064 Score=58.82 Aligned_cols=131 Identities=10% Similarity=0.123 Sum_probs=77.7
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEECCcccC-CC-CCCCCCccccccCC-CCCCCCHHHHHHHHHHHhhcCCEEEEeecc
Q 004253 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEH-SY-YASFGYHVTNFFAP-SSRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~-~~-~~~~GY~~~~~~a~-~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~ 409 (765)
+-..+. +.++.+++.|| ++|+|=.=+-. .. ...+| + |.. ..+|-. .++||+.+|++|++|++-+.+
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~----~-f~wd~~~FPd---p~~mi~~L~~~G~k~~~~v~P 92 (317)
T cd06598 22 NWQEVD-DTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG----N-LDWDRKAFPD---PAGMIADLAKKGVKTIVITEP 92 (317)
T ss_pred CHHHHH-HHHHHHHHhCCCceEEEEechhhcCcccCCcee----e-eEeccccCCC---HHHHHHHHHHcCCcEEEEEcC
Confidence 345555 58888888887 67776431100 00 00111 2 222 246654 478999999999999998753
Q ss_pred ccccCCCcccCcCC-CCCCCCC-cccCCCC-----CcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccc
Q 004253 410 SHASNNVLDGLNMF-DGTDGHY-FHSGSRG-----YHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (765)
Q Consensus 410 NH~~~~~~~~~~~f-~g~~~~y-f~~~~~g-----~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~ 480 (765)
- +..+.. .| ++....| +.....+ ..|......+|+.||++++...+.++..++ .|||||-+|...
T Consensus 93 ~-v~~~~~----~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gvdg~w~D~~E 164 (317)
T cd06598 93 F-VLKNSK----NWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLID-QGVTGWWGDLGE 164 (317)
T ss_pred c-ccCCch----hHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhh-CCccEEEecCCC
Confidence 2 222211 11 1111223 2221111 122234567899999999999999988755 999999999753
No 90
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=94.47 E-value=0.087 Score=61.62 Aligned_cols=90 Identities=22% Similarity=0.305 Sum_probs=57.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH---------HcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHH
Q 004253 445 RLFNYGSWEVLRFLLSNARWWLE---------EYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLML 515 (765)
Q Consensus 445 ~~ln~~~~~v~~~i~~~l~~W~~---------e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~ 515 (765)
.++|.+||.|+.+-+.++-|.+. +.++||||+|+|..+ |.+ .|+.
T Consensus 144 NDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNV-----------------------dAD---lLqi 197 (809)
T PF02324_consen 144 NDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNV-----------------------DAD---LLQI 197 (809)
T ss_dssp EEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS------------------------TH---HHHH
T ss_pred ccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeeccccc-----------------------CHH---HHHH
Confidence 67899999999999999999998 789999999999765 222 3444
Q ss_pred HHHHHhhcC---------CCceEEeeccCCCCc-cccccccCCcccchhhhHHHH
Q 004253 516 VNDMIHGLY---------PEAVSIGEDVSGMPT-FCIPVQDGGVGFDYRLQMAIA 560 (765)
Q Consensus 516 ~~~~v~~~~---------p~~i~iaE~~~~~p~-~~~~~~~gg~gfD~~l~~~~~ 560 (765)
+.+..++.+ -.-+.|-|.|+.... ....-....+-+|..++..+.
T Consensus 198 a~dyfkaaYgv~~~~a~An~HlSilE~ws~nd~~y~~~~g~~qL~mD~~~~~~l~ 252 (809)
T PF02324_consen 198 AGDYFKAAYGVDKNDANANKHLSILEAWSSNDPDYVKDTGNPQLTMDNGLRLALL 252 (809)
T ss_dssp HHHHHHHHH-TTTBHHHHCTC--EESSSTTTHHHHHHHTTSSSBEEEHHHHHHHH
T ss_pred HHHHHHHHhCCCcChhhHhhhheeeeccccCChHHHhcCCCceeeecHHHHHHHH
Confidence 444444332 257889999975332 222222233567887776664
No 91
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=94.40 E-value=0.18 Score=55.10 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=60.5
Q ss_pred CCcccC-CCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEeccccccccccc-CccccccCCCCcccCccCChhHHHHHH
Q 004253 437 GYHWMW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHH-GLQVAFTGNYSEYFGFATDVDAVVYLM 514 (765)
Q Consensus 437 g~~~~w-~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~-g~~~~f~~~~~~~~g~~~d~~a~~~l~ 514 (765)
+....| +...+|+.+++.+++|.+-+...++ .|+|||-+|.+....+... |.+ + .....+-+.|++
T Consensus 127 ~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~-kGfDGvfLD~lDsy~~~~~~~~~--~---------~~~~~~m~~~i~ 194 (315)
T TIGR01370 127 NEDPDWPGNYDVKYWDPEWKAIAFSYLDRVIA-QGFDGVYLDLIDAFEYWAENGDN--R---------PGAAAEMIAFVC 194 (315)
T ss_pred CCCCCCCCceeEecccHHHHHHHHHHHHHHHH-cCCCeEeeccchhhhhhcccCCc--c---------hhhHHHHHHHHH
Confidence 345567 7788999999999999988877665 8999999999876533210 000 0 011123458899
Q ss_pred HHHHHHhhcCCCceEEee
Q 004253 515 LVNDMIHGLYPEAVSIGE 532 (765)
Q Consensus 515 ~~~~~v~~~~p~~i~iaE 532 (765)
.+.+.+|+.+|++++|.-
T Consensus 195 ~Ia~~ar~~~P~~~II~N 212 (315)
T TIGR01370 195 EIAAYARAQNPQFVIIPQ 212 (315)
T ss_pred HHHHHHHHHCCCEEEEec
Confidence 999999999999998853
No 92
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=94.10 E-value=0.19 Score=53.02 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 004253 385 TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARW 464 (765)
Q Consensus 385 t~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~ 464 (765)
+.+++++.|..+|++|++|++=|--+|.+.. + ....+++-++.+.+++.-
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~-------~-----------------------~~~~~~~~~~~fa~~l~~ 98 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAG-------F-----------------------ANNLSDAAAKAYAKAIVD 98 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCC-------c-----------------------cccCCHHHHHHHHHHHHH
Confidence 4689999999999999999998866554321 0 012245556777778888
Q ss_pred HHHHcCCcEEEecc
Q 004253 465 WLEEYKFDGFRFDG 478 (765)
Q Consensus 465 W~~e~gvDGFRfD~ 478 (765)
+++.||+||+-+|-
T Consensus 99 ~v~~yglDGiDiD~ 112 (255)
T cd06542 99 TVDKYGLDGVDFDD 112 (255)
T ss_pred HHHHhCCCceEEee
Confidence 88889999999994
No 93
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=93.99 E-value=0.48 Score=52.24 Aligned_cols=148 Identities=17% Similarity=0.136 Sum_probs=78.6
Q ss_pred hhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCc
Q 004253 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLN 421 (765)
Q Consensus 342 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~ 421 (765)
+.+..||+.|+|+|-|=-- -.|.. .-+-+.+...+|.++|+++||+|+||+=|+.+-.+.
T Consensus 28 d~~~ilk~~G~N~vRlRvw-v~P~~--------------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDP----- 87 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRVW-VNPYD--------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADP----- 87 (332)
T ss_dssp -HHHHHHHTT--EEEEEE--SS-TT--------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BT-----
T ss_pred CHHHHHHhcCCCeEEEEec-cCCcc--------------cccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCC-----
Confidence 5899999999999987542 22321 345578999999999999999999999877653321
Q ss_pred CCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCccc
Q 004253 422 MFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYF 501 (765)
Q Consensus 422 ~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~ 501 (765)
| .......|....++--...|.+|-.++|....+ .|+. .|.|.- ..+ +..++-+..
T Consensus 88 ---g---------~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~-~G~~---pd~VQV-GNE---in~Gmlwp~---- 143 (332)
T PF07745_consen 88 ---G---------KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA-AGVT---PDMVQV-GNE---INNGMLWPD---- 143 (332)
T ss_dssp ---T---------B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH-TT-----ESEEEE-SSS---GGGESTBTT----
T ss_pred ---C---------CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCC---ccEEEe-Ccc---ccccccCcC----
Confidence 0 000011233222222234566666666666655 4554 665531 100 000111111
Q ss_pred CccCChhHH-HHHHHHHHHHhhcCCCceEEeec
Q 004253 502 GFATDVDAV-VYLMLVNDMIHGLYPEAVSIGED 533 (765)
Q Consensus 502 g~~~d~~a~-~~l~~~~~~v~~~~p~~i~iaE~ 533 (765)
|...+.+.+ .+|+...++|++..|++.++--.
T Consensus 144 g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~ 176 (332)
T PF07745_consen 144 GKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHL 176 (332)
T ss_dssp TCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEE
T ss_pred CCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 112333333 67777789999998887665543
No 94
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=93.78 E-value=1.2 Score=58.30 Aligned_cols=187 Identities=16% Similarity=0.158 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhhcC--CEEEEeeccccccC--CCcc-----cCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHH--HH
Q 004253 387 DDLKSLIDKAHELG--LLVLMDIVHSHASN--NVLD-----GLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE--VL 455 (765)
Q Consensus 387 ~efk~LV~~aH~~G--I~VIlDvV~NH~~~--~~~~-----~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~--v~ 455 (765)
++++++-+.|+++| |++|-|+.+--... +... .+..--|.+|.+|... |. .|+.+.+|+..-. =-
T Consensus 386 ~Ql~~~~~~A~~~GM~IgLigDLpVgV~~dsADvWa~p~lF~l~~~aGAPPD~Fs~~--GQ--~WG~P~y~p~~L~~~gY 461 (1693)
T PRK14507 386 LQLAAAGERAQALGMRLGLYRDLAVGVDRGGSETWSHPELFANGASIGAPPDELNPK--GQ--DWGLPPFDPLELERDGY 461 (1693)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeeeceECCCcHHHhcCHhhhhcCCccCCCCCcCccc--cc--cCCCcCcCHHHHHhcCh
Confidence 57788888999999 78899998633222 2100 0122346777788643 32 4677777653211 11
Q ss_pred HHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeeccC
Q 004253 456 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 535 (765)
Q Consensus 456 ~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~~ 535 (765)
+..++-++.-++ ++|++|+|.+..+...- -++.+- ....|.....+.-+++..+. +.+..+++.+|||+.+
T Consensus 462 ~ww~~rlr~~m~--~~g~lRIDH~lGl~RlW-~IP~g~----ta~~G~yv~yP~~~ll~~la--LEs~r~~~~VIgEDLG 532 (1693)
T PRK14507 462 APFRALLRANMR--HAGALRIDHVMQLMRLF-WIPLGR----SAREGAYVAYPFEPMLAVLA--LESHRNRCLVIGEDLG 532 (1693)
T ss_pred HHHHHHHHHHHH--HCCEEEeccHHhhhHhc-ccCCCC----CCCCCeEEECCHHHHHHHHH--HHHhcCCCeEEEecCC
Confidence 244555555555 68999999875542110 011100 11112222223333443332 1234467899999986
Q ss_pred CCCcccccccc-CC-cccchhhhHHHHHHHHHHHhhhhhhhhhhhhHhhhccccccccceecccCcccccc
Q 004253 536 GMPTFCIPVQD-GG-VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALV 604 (765)
Q Consensus 536 ~~p~~~~~~~~-gg-~gfD~~l~~~~~d~~~~~lk~~~~~~~~~~~~~~l~~~~~~~~~v~f~enHD~~r~ 604 (765)
.-|...+.... -| .|+.-- . +..... + .......|+.++|.|+.+||++++
T Consensus 533 tVp~~Vr~~l~~~gi~Gm~VL-~----------Fe~~~~----~---~~~~P~~y~~~sva~tgTHD~pTl 585 (1693)
T PRK14507 533 TVPEGFRDALARAGVLSYRIL-Y----------FEREDG----G---AFKPPAAYPADALAAVTTHDLPTL 585 (1693)
T ss_pred CCCHHHHHHHHHcCCCCceEE-E----------eeecCC----C---CCCCcccCcCCeEEECCCCCCHhH
Confidence 54443322211 11 111100 0 000000 0 012223567789999999999865
No 95
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=93.35 E-value=0.43 Score=53.27 Aligned_cols=85 Identities=12% Similarity=0.009 Sum_probs=58.0
Q ss_pred HHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 004253 390 KSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEY 469 (765)
Q Consensus 390 k~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~ 469 (765)
++|+..||++|++|++..-+ + .-...+++.|+-+++++.-++++|
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~------------------~-----------------~~~l~~~~~R~~fi~siv~~~~~~ 111 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDV------------------P-----------------LEQISNPTYRTQWIQQKVELAKSQ 111 (358)
T ss_pred HHHHHHHHHcCCEEEEECcc------------------C-----------------HHHcCCHHHHHHHHHHHHHHHHHh
Confidence 48999999999999974100 0 001457888998888888899999
Q ss_pred CCcEEEecccccccccccCccccccCCCCcccCccCChhH-HHHHHHHHHHHhhcCCCc
Q 004253 470 KFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHGLYPEA 527 (765)
Q Consensus 470 gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a-~~~l~~~~~~v~~~~p~~ 527 (765)
|+||+-+|-=.-. . ....+.+. ..|++++++.+++..++.
T Consensus 112 gfDGIdIDwE~p~-------------~-----~~~~d~~~~t~llkelr~~l~~~~~~~ 152 (358)
T cd02875 112 FMDGINIDIEQPI-------------T-----KGSPEYYALTELVKETTKAFKKENPGY 152 (358)
T ss_pred CCCeEEEcccCCC-------------C-----CCcchHHHHHHHHHHHHHHHhhcCCCc
Confidence 9999999952100 0 00122233 378999999998765543
No 96
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=93.21 E-value=1.5 Score=48.34 Aligned_cols=168 Identities=14% Similarity=0.205 Sum_probs=92.1
Q ss_pred HhhHhhhhhHHHHcCCCEEEEC-------CcccCCCCCC-CCCcc---------ccccCCCCCCCCHHHHHHHHHHHhhc
Q 004253 337 ANFRDDVLPRIKRLGYNAVQIM-------AVQEHSYYAS-FGYHV---------TNFFAPSSRCGTPDDLKSLIDKAHEL 399 (765)
Q Consensus 337 ~~~~~~~L~yLk~LGvt~I~L~-------Pi~e~~~~~~-~GY~~---------~~~~a~~~~~Gt~~efk~LV~~aH~~ 399 (765)
..+. +.|+.+..+++|.++|= ++-..+.-.. ..|.. .+-......| |.+|+|++|+-|.++
T Consensus 17 ~~ik-~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y-T~~di~eiv~yA~~r 94 (326)
T cd06564 17 DFLK-DIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYY-TKEEFKELIAYAKDR 94 (326)
T ss_pred HHHH-HHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcc-cHHHHHHHHHHHHHc
Confidence 3444 68899999999999871 1111110000 00000 0001112223 899999999999999
Q ss_pred CCEEEEee-ccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecc
Q 004253 400 GLLVLMDI-VHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 478 (765)
Q Consensus 400 GI~VIlDv-V~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~ 478 (765)
||.||-.+ ++.|+..-- .....+..... ........||..+|++.+++.+.+.-.++-|.. .+-
T Consensus 95 gI~vIPEID~PGH~~a~~-~~~pel~~~~~----------~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~----~~~ 159 (326)
T cd06564 95 GVNIIPEIDSPGHSLAFT-KAMPELGLKNP----------FSKYDKDTLDISNPEAVKFVKALFDEYLDGFNP----KSD 159 (326)
T ss_pred CCeEeccCCCcHHHHHHH-HhhHHhcCCCc----------ccCCCcccccCCCHHHHHHHHHHHHHHHHhcCC----CCC
Confidence 99999888 477774310 00000000000 011123568999999999999999999885541 011
Q ss_pred cccccccccCccccccCCCCcccCccCChh-HHHHHHHHHHHHhhcCCCceEEeecc
Q 004253 479 VTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGLYPEAVSIGEDV 534 (765)
Q Consensus 479 v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-a~~~l~~~~~~v~~~~p~~i~iaE~~ 534 (765)
.=|+ |. +++. ......+ -..|++.+.+.+++.....++-.|..
T Consensus 160 ~~Hi-----Gg-DE~~-------~~~~~~~~~~~f~~~~~~~v~~~gk~~~~W~d~~ 203 (326)
T cd06564 160 TVHI-----GA-DEYA-------GDAGYAEAFRAYVNDLAKYVKDKGKTPRVWGDGI 203 (326)
T ss_pred EEEe-----cc-cccc-------ccCccHHHHHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 1111 22 1111 1111112 23789999999998765555544443
No 97
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=92.73 E-value=2.7 Score=46.83 Aligned_cols=175 Identities=16% Similarity=0.148 Sum_probs=96.0
Q ss_pred HhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccC--------CCCCCCCHHHHHHHHHHHhhcCCEEEEee-
Q 004253 337 ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFA--------PSSRCGTPDDLKSLIDKAHELGLLVLMDI- 407 (765)
Q Consensus 337 ~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a--------~~~~~Gt~~efk~LV~~aH~~GI~VIlDv- 407 (765)
..+. +.|+.+..+.+|.++|== ..+.+|.+....|=. ....| |.+|+|++|+-|.++||.||-.+
T Consensus 18 ~~ik-~~Id~ma~~KlN~lh~Hl----tDd~~~rle~~~~P~Lt~~ga~~~~~~Y-T~~di~eiv~yA~~rgI~vIPEID 91 (348)
T cd06562 18 DSIK-RTIDAMAYNKLNVLHWHI----TDSQSFPLESPSYPELSKKGAYSPSEVY-TPEDVKEIVEYARLRGIRVIPEID 91 (348)
T ss_pred HHHH-HHHHHHHHhCCcEEEEeE----EcCCCceEeeCCCchhhhccCcCCCceE-CHHHHHHHHHHHHHcCCEEEEecc
Confidence 3444 688899999999988620 001122222222111 12222 89999999999999999999998
Q ss_pred ccccccCCC--cccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEeccccccccc
Q 004253 408 VHSHASNNV--LDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYT 485 (765)
Q Consensus 408 V~NH~~~~~--~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~ 485 (765)
++.|+..-. ...+.. .+. ..+.. ....-....||..+|++.+++.+.+.-.++-|... +-
T Consensus 92 ~PGH~~a~~~~~p~l~~-~~~--~~~~~----~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~-----------~i 153 (348)
T cd06562 92 TPGHTGSWGQGYPELLT-GCY--AVWRK----YCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDK-----------YF 153 (348)
T ss_pred CchhhHHHHHhChhhhC-CCC--ccccc----cccCCCCccccCCChhHHHHHHHHHHHHHHhcCCc-----------ce
Confidence 478875411 001100 000 00000 00011224689999999999999999999855411 11
Q ss_pred ccCccccccCCCCc---------ccCccCChhHH--HHHHHHHHHHhhcCCCceEEeeccCC
Q 004253 486 HHGLQVAFTGNYSE---------YFGFATDVDAV--VYLMLVNDMIHGLYPEAVSIGEDVSG 536 (765)
Q Consensus 486 ~~g~~~~f~~~~~~---------~~g~~~d~~a~--~~l~~~~~~v~~~~p~~i~iaE~~~~ 536 (765)
|-|...-....|.. ..| ..+...+ .|++.+.+.+++.....+.-.|...+
T Consensus 154 HiGgDE~~~~~w~~~p~~~~~m~~~g-~~~~~~l~~~f~~~~~~~l~~~Gk~~i~W~d~~~~ 214 (348)
T cd06562 154 HLGGDEVNFNCWNSNPEIQKFMKKNN-GTDYSDLESYFIQRALDIVRSLGKTPIVWEEVFDN 214 (348)
T ss_pred EeecCCCCCCcccCCHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHcCCeEEEeeecccC
Confidence 11221111111110 001 1122222 58889999999887666666665543
No 98
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=92.60 E-value=0.17 Score=61.68 Aligned_cols=89 Identities=19% Similarity=0.296 Sum_probs=61.0
Q ss_pred HHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCccc---C--CCCCCCCCCHHHHHHHHHHH-
Q 004253 389 LKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWM---W--DSRLFNYGSWEVLRFLLSNA- 462 (765)
Q Consensus 389 fk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~---w--~~~~ln~~~~~v~~~i~~~l- 462 (765)
.|+||+.+|++||++|.=+.+.-..+.. ..-......||..+..|..+. | ....+||.||++|+.-.+..
T Consensus 323 pk~mi~~l~~~Gikl~~~i~P~i~~d~~----~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~ 398 (772)
T COG1501 323 PKQMIAELHEKGIKLIVIINPYIKQDSP----LFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKK 398 (772)
T ss_pred HHHHHHHHHhcCceEEEEeccccccCCc----hHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHH
Confidence 3499999999999999988764333321 011122335666555543322 2 35779999999999999644
Q ss_pred HHHHHHcCCcEEEecccccc
Q 004253 463 RWWLEEYKFDGFRFDGVTSM 482 (765)
Q Consensus 463 ~~W~~e~gvDGFRfD~v~~m 482 (765)
..+++ +|||||-.|.-...
T Consensus 399 ~~l~d-~Gv~g~W~D~nEp~ 417 (772)
T COG1501 399 KNLLD-LGVDGFWNDMNEPE 417 (772)
T ss_pred hHHHh-cCccEEEccCCCCc
Confidence 55666 99999999987654
No 99
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=92.07 E-value=0.21 Score=55.37 Aligned_cols=129 Identities=14% Similarity=0.121 Sum_probs=79.2
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEECCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~~-~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
+-..+. +.+..+++.|| ++|+|=.=+- .+|.. |..++ +|- +.++||+++|++|++|++-+.+--
T Consensus 22 ~~~ev~-~~~~~~~~~~iP~d~i~lD~~~~------~~~~~---f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~v 88 (339)
T cd06603 22 DQEDVK-EVDAGFDEHDIPYDVIWLDIEHT------DGKRY---FTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPHI 88 (339)
T ss_pred CHHHHH-HHHHHHHHcCCCceEEEEChHHh------CCCCc---eEeCcccCC---CHHHHHHHHHHCCCEEEEEecCce
Confidence 445565 57888888887 6776642111 12221 33343 664 558899999999999999876433
Q ss_pred ccCCCcccCcCC-CCCCCCCcccCCCCC---cccC--CCCCCCCCCHHHHHHHHHHHHHHHH--HcCCcEEEeccc
Q 004253 412 ASNNVLDGLNMF-DGTDGHYFHSGSRGY---HWMW--DSRLFNYGSWEVLRFLLSNARWWLE--EYKFDGFRFDGV 479 (765)
Q Consensus 412 ~~~~~~~~~~~f-~g~~~~yf~~~~~g~---~~~w--~~~~ln~~~~~v~~~i~~~l~~W~~--e~gvDGFRfD~v 479 (765)
. .+. ....| ++....||-.+..+. ...| ....+|+.||++++...+.++..+. ..++|||-+|..
T Consensus 89 ~-~~~--~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 89 K-RDD--GYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred e-cCC--CCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccC
Confidence 2 210 00001 112223443333221 1122 2357999999999999999998876 468999999964
No 100
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=91.61 E-value=0.45 Score=52.57 Aligned_cols=109 Identities=15% Similarity=0.190 Sum_probs=70.9
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEECCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~-~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
+-..+. +.+..+++.+| ++|+|=.=+- . +| .-|..+ .+|-.+ ++||+++|++|++|++-+.+-
T Consensus 22 ~~~ev~-~v~~~~r~~~IP~D~i~lDidy~----~--~~---~~Ft~d~~~FPdp---~~mv~~L~~~G~klv~~i~P~- 87 (332)
T cd06601 22 NRSDLE-EVVEGYRDNNIPLDGLHVDVDFQ----D--NY---RTFTTNGGGFPNP---KEMFDNLHNKGLKCSTNITPV- 87 (332)
T ss_pred CHHHHH-HHHHHHHHcCCCCceEEEcCchh----c--CC---CceeecCCCCCCH---HHHHHHHHHCCCeEEEEecCc-
Confidence 334454 57777777776 7777653221 1 22 123333 366544 789999999999999887532
Q ss_pred ccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccc
Q 004253 412 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (765)
Q Consensus 412 ~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~ 480 (765)
+.. |. .+.+.+.-.||.||+++++-.+..+.+.+ .|||||-.|.-.
T Consensus 88 i~~----------g~------------~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~Gv~~~W~DmnE 133 (332)
T cd06601 88 ISY----------GG------------GLGSPGLYPDLGRPDVREWWGNQYKYLFD-IGLEFVWQDMTT 133 (332)
T ss_pred eec----------Cc------------cCCCCceeeCCCCHHHHHHHHHHHHHHHh-CCCceeecCCCC
Confidence 110 10 01112245789999999998888888777 899999999753
No 101
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=91.59 E-value=2.3 Score=46.43 Aligned_cols=164 Identities=15% Similarity=0.102 Sum_probs=93.3
Q ss_pred HHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccc------------cCCCCCCCCHHHHHHHHHHHhhcCCEE
Q 004253 336 YANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNF------------FAPSSRCGTPDDLKSLIDKAHELGLLV 403 (765)
Q Consensus 336 ~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~------------~a~~~~~Gt~~efk~LV~~aH~~GI~V 403 (765)
...+. +.|+.+...++|.++|==. .+.+|.+....| +.....| |.+|++++|+-|.++||.|
T Consensus 15 ~~~lk-~~id~ma~~K~N~lhlHl~----D~~~~~le~~~~p~l~~~g~~~~~~~~~~~y-T~~di~elv~yA~~rgI~v 88 (303)
T cd02742 15 VESIK-RTIDVLARYKINTFHWHLT----DDQAWRIESKKFPELAEKGGQINPRSPGGFY-TYAQLKDIIEYAAARGIEV 88 (303)
T ss_pred HHHHH-HHHHHHHHhCCcEEEEeee----cCCCceEeeCccchhhhhcccccCCCCCCeE-CHHHHHHHHHHHHHcCCEE
Confidence 34454 6889999999999987311 011222222211 1122222 7999999999999999999
Q ss_pred EEeec-cccccCCCcccCcCCCCC-CCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEeccccc
Q 004253 404 LMDIV-HSHASNNVLDGLNMFDGT-DGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 481 (765)
Q Consensus 404 IlDvV-~NH~~~~~~~~~~~f~g~-~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~ 481 (765)
|-.|- +.|+..-- ..+... ..++- +..+.-....||..+|++.+++.+.+.-+++-|. +-.=|
T Consensus 89 iPEiD~PGH~~a~~----~~~p~l~~~~~~-----~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~------~~~iH 153 (303)
T cd02742 89 IPEIDMPGHSTAFV----KSFPKLLTECYA-----GLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFP------DRYLH 153 (303)
T ss_pred EEeccchHHHHHHH----HhCHHhccCccc-----cCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCC------CCeEE
Confidence 99984 78875311 011000 00000 0001112246899999999999999999998441 11112
Q ss_pred ccccccCccccccCCCCcccCccCChh--HHHHHHHHHHHHhhcCCCceEEeecc
Q 004253 482 MMYTHHGLQVAFTGNYSEYFGFATDVD--AVVYLMLVNDMIHGLYPEAVSIGEDV 534 (765)
Q Consensus 482 m~~~~~g~~~~f~~~~~~~~g~~~d~~--a~~~l~~~~~~v~~~~p~~i~iaE~~ 534 (765)
+ |.. ++ +.. .+.. -..|++.+.+.+++.....++-+|..
T Consensus 154 i-----GgD-E~-------~~~-~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~ 194 (303)
T cd02742 154 I-----GGD-EA-------HFK-QDRKHLMSQFIQRVLDIVKKKGKKVIVWQDGF 194 (303)
T ss_pred e-----cce-ec-------CCC-CCHHHHHHHHHHHHHHHHHHcCCeEEEecccc
Confidence 2 221 11 111 1112 23788999999988765555555543
No 102
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=90.80 E-value=7.5 Score=47.47 Aligned_cols=68 Identities=24% Similarity=0.322 Sum_probs=47.0
Q ss_pred CCCCCCCCC-----HHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHH
Q 004253 443 DSRLFNYGS-----WEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVN 517 (765)
Q Consensus 443 ~~~~ln~~~-----~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~ 517 (765)
|+-.|+|++ |.++++|......=.+ =+||+|+|.+.+- .+...+| +-
T Consensus 497 DsVKLryG~kpeDsPyLWq~M~kY~e~tAr--iFdG~RlDNcHsT-----------------------PlHVaEy---lL 548 (1521)
T KOG3625|consen 497 DSVKLRYGNKPEDSPYLWQHMKKYTEITAR--IFDGVRLDNCHST-----------------------PLHVAEY---LL 548 (1521)
T ss_pred ceeeeccCCCcccChHHHHHHHHHHHHHHH--HhcceeeccCCCC-----------------------chhHHHH---HH
Confidence 446688864 6788888777664444 6899999998643 1222233 34
Q ss_pred HHHhhcCCCceEEeeccCCCC
Q 004253 518 DMIHGLYPEAVSIGEDVSGMP 538 (765)
Q Consensus 518 ~~v~~~~p~~i~iaE~~~~~p 538 (765)
++.++.+|+.+++||-++|..
T Consensus 549 d~ARk~nPnlYVvAELFtgSe 569 (1521)
T KOG3625|consen 549 DAARKLNPNLYVVAELFTGSE 569 (1521)
T ss_pred HHHHhcCCCeEEEeeeccCCc
Confidence 556778999999999987643
No 103
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=90.69 E-value=0.64 Score=46.20 Aligned_cols=66 Identities=15% Similarity=0.300 Sum_probs=46.6
Q ss_pred hhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 342 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
+.+..++++|+++|-|. ...+...-+.|+.++...-..+..+-+..+.++|.+.||+|++-+-++.
T Consensus 24 ~~~~~m~~~GidtlIlq----~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 24 EEFRAMKAIGIDTLILQ----WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDP 89 (166)
T ss_pred HHHHHHHHcCCcEEEEE----EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCc
Confidence 68999999999999776 2222233344555422222335678899999999999999999877653
No 104
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=90.38 E-value=1.4 Score=53.22 Aligned_cols=132 Identities=20% Similarity=0.313 Sum_probs=79.5
Q ss_pred CCHHhhHhhhhhHHHHcCCC--EEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 334 NTYANFRDDVLPRIKRLGYN--AVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 334 Gt~~~~~~~~L~yLk~LGvt--~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
++...+. +...+..++|+. ++|.-=-+. -+| .||..=...|++ ++.+|+.+|++|+++|+=+-++-
T Consensus 308 ~nls~~~-dvv~~~~~agiPld~~~~DiDyM------d~y--kDFTvd~~~fp~---~~~fv~~Lh~~G~kyvliidP~i 375 (805)
T KOG1065|consen 308 KNLSVVR-DVVENYRAAGIPLDVIVIDIDYM------DGY--KDFTVDKVWFPD---LKDFVDDLHARGFKYVLIIDPFI 375 (805)
T ss_pred ccHHHHH-HHHHHHHHcCCCcceeeeehhhh------hcc--cceeeccccCcc---hHHHHHHHHhCCCeEEEEeCCcc
Confidence 5667777 589999999996 544211111 111 343333345655 99999999999999977655332
Q ss_pred ccCCCcccCcCCC-CCCCCCcccCCCCC------cccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccc
Q 004253 412 ASNNVLDGLNMFD-GTDGHYFHSGSRGY------HWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (765)
Q Consensus 412 ~~~~~~~~~~~f~-g~~~~yf~~~~~g~------~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~ 480 (765)
..... ...++ |.....+-.+..|. -|.-...-.|+.||.+.....+.++..-++.++|||-+|+-.
T Consensus 376 s~~~~---y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDmnE 448 (805)
T KOG1065|consen 376 STNSS---YGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDMNE 448 (805)
T ss_pred ccCcc---chhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEEECCC
Confidence 21111 01111 11112222211111 122233568899999999999998888889999999999843
No 105
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=89.80 E-value=2.6 Score=44.53 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHH
Q 004253 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWW 465 (765)
Q Consensus 386 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W 465 (765)
..++..++++||++|++|++=|- ++.. + . |. . -..+++.|+.+++++.-+
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~----------~----~-~~------------~--~~~~~~~r~~fi~~lv~~ 94 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSP----------P----E-FT------------A--ALNDPAKRKALVDKIINY 94 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCC----------C----c-ch------------h--hhcCHHHHHHHHHHHHHH
Confidence 46789999999999999998542 1110 0 0 00 0 235688899899999999
Q ss_pred HHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhc
Q 004253 466 LEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGL 523 (765)
Q Consensus 466 ~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~ 523 (765)
+++||+||+-+|--... . ....-..|++++++.+++.
T Consensus 95 ~~~~~~DGIdiDwE~~~--------------------~-~~~~~~~fv~~Lr~~l~~~ 131 (253)
T cd06545 95 VVSYNLDGIDVDLEGPD--------------------V-TFGDYLVFIRALYAALKKE 131 (253)
T ss_pred HHHhCCCceeEEeeccC--------------------c-cHhHHHHHHHHHHHHHhhc
Confidence 99999999999952100 0 0112346889999888764
No 106
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=89.00 E-value=1.5 Score=46.75 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=62.7
Q ss_pred CCHHhhHhhhhhHHHHcCC--CEEEECCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHhhcCCEEEEeeccc
Q 004253 334 NTYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (765)
Q Consensus 334 Gt~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~-~~~Gt~~efk~LV~~aH~~GI~VIlDvV~N 410 (765)
.+-..+. +.+..+++.|| ++|+|-.-+... ++.++ +..+ .+|-. .++||+.+|++|++|++-+.+.
T Consensus 21 ~~~~~v~-~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~------~~~d~~~Fpd---p~~~i~~l~~~g~~~~~~~~P~ 89 (265)
T cd06589 21 GDQDKVL-EVIDGMRENDIPLDGFVLDDDYTDG-YGDFT------FDWDAGKFPN---PKSMIDELHDNGVKLVLWIDPY 89 (265)
T ss_pred CCHHHHH-HHHHHHHHcCCCccEEEECcccccC-Cceee------eecChhhCCC---HHHHHHHHHHCCCEEEEEeChh
Confidence 4556666 58888888776 678775433221 11121 2333 36644 5789999999999999976431
Q ss_pred cccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEeccccc
Q 004253 411 HASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 481 (765)
Q Consensus 411 H~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~ 481 (765)
+ ++...+.++..+.++|||||-+|....
T Consensus 90 -v------------------------------------------~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 117 (265)
T cd06589 90 -I------------------------------------------REWWAEVVKKLLVSLGVDGFWTDMGEP 117 (265)
T ss_pred -H------------------------------------------HHHHHHHHHHhhccCCCCEEeccCCCC
Confidence 1 566666677665669999999997643
No 107
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=88.73 E-value=0.91 Score=56.49 Aligned_cols=129 Identities=14% Similarity=0.234 Sum_probs=78.5
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEECCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~~-~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
+-..+. +.+..+++.|| ++|||-- .+. .||.. |..++ +|- +.++||+.+|++|+++|.=+.+ +
T Consensus 199 sq~eV~-eva~~fre~~IP~DvIwlDi----dYm--~g~~~---FTwD~~rFP---dP~~mv~~Lh~~G~kvv~iidP-g 264 (978)
T PLN02763 199 SAKRVA-EIARTFREKKIPCDVVWMDI----DYM--DGFRC---FTFDKERFP---DPKGLADDLHSIGFKAIWMLDP-G 264 (978)
T ss_pred CHHHHH-HHHHHHHHcCCCceEEEEeh----hhh--cCCCc---eeECcccCC---CHHHHHHHHHHCCCEEEEEEcC-C
Confidence 334555 57888888887 7787642 211 13332 34443 664 4579999999999999775433 2
Q ss_pred ccCCCcccCcCC-CCCCCCCcccCCCCC---cccCC--CCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccc
Q 004253 412 ASNNVLDGLNMF-DGTDGHYFHSGSRGY---HWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (765)
Q Consensus 412 ~~~~~~~~~~~f-~g~~~~yf~~~~~g~---~~~w~--~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~ 480 (765)
+..+. +...+ .+....+|.....|. ...|. ..-.||.||+++++..+.++.+++ .|||||-+|.-.
T Consensus 265 I~~d~--gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d-~GVDG~W~DmnE 336 (978)
T PLN02763 265 IKAEE--GYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVS-NGVDGIWNDMNE 336 (978)
T ss_pred CccCC--CCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhc-CCCcEEEccCCC
Confidence 22110 11111 122223343332221 11232 344799999999999999998887 899999999854
No 108
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=88.24 E-value=7.5 Score=43.94 Aligned_cols=115 Identities=22% Similarity=0.178 Sum_probs=74.6
Q ss_pred hhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCc
Q 004253 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLN 421 (765)
Q Consensus 342 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~ 421 (765)
+-+.-+|+.|...|-|+.-+ |.+..-|-=..++|.+++..+ ..+=+++|+++|+++||++-+ - |... ++.
T Consensus 85 ~Wa~~~k~AGakY~vlTaKH-HDGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~--Y--~S~~---DW~- 154 (384)
T smart00812 85 EWADLFKKAGAKYVVLTAKH-HDGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL--Y--HSLF---DWF- 154 (384)
T ss_pred HHHHHHHHcCCCeEEeeeee-cCCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE--E--cCHH---HhC-
Confidence 57888999999998876644 222233444456777776655 458899999999999999988 2 2221 111
Q ss_pred CCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHH---HHHHHHHHHHcCCcEEEeccc
Q 004253 422 MFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFL---LSNARWWLEEYKFDGFRFDGV 479 (765)
Q Consensus 422 ~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i---~~~l~~W~~e~gvDGFRfD~v 479 (765)
.+.|... ++........+...+|+ ..-++-.++.||-|.+-||..
T Consensus 155 -----~p~y~~~--------~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~ 202 (384)
T smart00812 155 -----NPLYAGP--------TSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGG 202 (384)
T ss_pred -----CCccccc--------cccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 1222110 00011122345566777 888899999999999999975
No 109
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=88.20 E-value=5.9 Score=43.18 Aligned_cols=165 Identities=17% Similarity=0.115 Sum_probs=93.6
Q ss_pred HhhHhhhhhHHHHcCCCEEEECCc--ccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeec-ccccc
Q 004253 337 ANFRDDVLPRIKRLGYNAVQIMAV--QEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV-HSHAS 413 (765)
Q Consensus 337 ~~~~~~~L~yLk~LGvt~I~L~Pi--~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV-~NH~~ 413 (765)
..+. +.|+.++.+|+|.++|==- ++.+.....++. ...| |.+|++++++-|.++||.||-.+- +.|+.
T Consensus 17 ~~lk-~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~-------~~~y-T~~ei~ei~~yA~~~gI~vIPeid~pGH~~ 87 (301)
T cd06565 17 SYLK-KLLRLLALLGANGLLLYYEDTFPYEGEPEVGRM-------RGAY-TKEEIREIDDYAAELGIEVIPLIQTLGHLE 87 (301)
T ss_pred HHHH-HHHHHHHHcCCCEEEEEEecceecCCCcccccC-------CCCc-CHHHHHHHHHHHHHcCCEEEecCCCHHHHH
Confidence 3444 6899999999999998311 111111111110 2233 899999999999999999998773 67764
Q ss_pred CCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccc
Q 004253 414 NNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAF 493 (765)
Q Consensus 414 ~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f 493 (765)
.- +.. +.|-....... ....+|-.+|++.++|.+.+.-.++-+.-.=| |+ |....+
T Consensus 88 ~~----l~~-----~~~~~l~~~~~----~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~------HI-----G~DE~~ 143 (301)
T cd06565 88 FI----LKH-----PEFRHLREVDD----PPQTLCPGEPKTYDFIEEMIRQVLELHPSKYI------HI-----GMDEAY 143 (301)
T ss_pred HH----HhC-----cccccccccCC----CCCccCCCChhHHHHHHHHHHHHHHhCCCCeE------EE-----CCCccc
Confidence 21 100 01110000000 12468999999999999999999985441111 12 222211
Q ss_pred cCC---CCcccCc-cCChhHHHHHHHHHHHHhhcCCCceEEeecc
Q 004253 494 TGN---YSEYFGF-ATDVDAVVYLMLVNDMIHGLYPEAVSIGEDV 534 (765)
Q Consensus 494 ~~~---~~~~~g~-~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~~ 534 (765)
... +....+. ....--..|++.+.+.+++..+..++-+|..
T Consensus 144 ~~g~~~~~~~~~~~~~~~l~~~~~~~v~~~v~~~g~~~~~W~D~~ 188 (301)
T cd06565 144 DLGRGRSLRKHGNLGRGELYLEHLKKVLKIIKKRGPKPMMWDDML 188 (301)
T ss_pred ccCCCHHHHHhcCCCHHHHHHHHHHHHHHHHHHcCCEEEEEhHHh
Confidence 111 1110011 1111124889999999998887666555543
No 110
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=88.06 E-value=3.5 Score=45.81 Aligned_cols=150 Identities=18% Similarity=0.089 Sum_probs=82.7
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccCCCcccC
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL 420 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~ 420 (765)
++-+.-+|++|...|-|+.-+- .+..-|-=..++|..++..+ ..+=+++|+++|+++||++.+ -+++. +-+
T Consensus 94 dqW~~~ak~aGakY~VlTakHH-DGF~LW~S~~t~~~v~~~~~-krDiv~El~~A~rk~Glk~G~--Y~S~~-dw~---- 164 (346)
T PF01120_consen 94 DQWAKLAKDAGAKYVVLTAKHH-DGFCLWPSKYTDYNVVNSGP-KRDIVGELADACRKYGLKFGL--YYSPW-DWH---- 164 (346)
T ss_dssp HHHHHHHHHTT-SEEEEEEE-T-T--BSS--TT-SSBGGGGGG-TS-HHHHHHHHHHHTT-EEEE--EEESS-SCC----
T ss_pred HHHHHHHHHcCCCEEEeehhhc-CccccCCCCCCcccccCCCC-CCCHHHHHHHHHHHcCCeEEE--Eecch-Hhc----
Confidence 3577889999999998876542 22233443445555555333 358899999999999999998 23222 211
Q ss_pred cCCCCCCCCCcccCCCCCcccCCCCCCCCC-CHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCc
Q 004253 421 NMFDGTDGHYFHSGSRGYHWMWDSRLFNYG-SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSE 499 (765)
Q Consensus 421 ~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~-~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~ 499 (765)
. +.|-.. ..+.. .......-. ...+.++...-++-.++.|.+|.+=||+...-
T Consensus 165 ~------~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~----------------- 218 (346)
T PF01120_consen 165 H------PDYPPD-EEGDE--NGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPD----------------- 218 (346)
T ss_dssp C------TTTTSS-CHCHH--CC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSC-----------------
T ss_pred C------cccCCC-ccCCc--ccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCc-----------------
Confidence 0 011000 00000 000000000 11245588888999999999999999986321
Q ss_pred ccCccCChhHHHHHHHHHHHHhhcCCCceEEee
Q 004253 500 YFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGE 532 (765)
Q Consensus 500 ~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE 532 (765)
..+.. ....+.+.+++..|++++..-
T Consensus 219 ------~~~~~-~~~~~~~~i~~~qp~~ii~~r 244 (346)
T PF01120_consen 219 ------PDEDW-DSAELYNWIRKLQPDVIINNR 244 (346)
T ss_dssp ------CCTHH-HHHHHHHHHHHHSTTSEEECC
T ss_pred ------ccccc-CHHHHHHHHHHhCCeEEEecc
Confidence 01111 226677888888998887664
No 111
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=87.97 E-value=15 Score=39.58 Aligned_cols=167 Identities=14% Similarity=0.081 Sum_probs=92.6
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHH-HHHH-HHHhhcCCEEEEeeccccccCCCcc
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDL-KSLI-DKAHELGLLVLMDIVHSHASNNVLD 418 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~ef-k~LV-~~aH~~GI~VIlDvV~NH~~~~~~~ 418 (765)
+..|++|+++|+|+|+|-++.+..+.+. +..-|=|+.+.--.+|| -..+ +...+.|++|..-+..=-.
T Consensus 20 ~~l~~ri~~~~~~tV~Lqaf~d~~gdg~----~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPvlaf------ 89 (294)
T PF14883_consen 20 DKLIQRIKDMGINTVYLQAFADPDGDGN----ADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLAF------ 89 (294)
T ss_pred HHHHHHHHHcCCCEEEEEeeeCCCCCCc----eeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehhhc------
Confidence 4688999999999999999987655432 12233355555555554 4444 3444899999888764111
Q ss_pred cCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEe-cccccccccccCccccccCCC
Q 004253 419 GLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRF-DGVTSMMYTHHGLQVAFTGNY 497 (765)
Q Consensus 419 ~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRf-D~v~~m~~~~~g~~~~f~~~~ 497 (765)
+-....+...........-....+..-+|++|+.|.+.-.-...--.|||+=| |-+- + . ++-++. ..
T Consensus 90 -----~lp~~~~~~~~~~~~~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILFhDDa~-L-~-D~E~~~----~~ 157 (294)
T PF14883_consen 90 -----DLPKVKRADEVRTDRPDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILFHDDAV-L-S-DFEIAA----IR 157 (294)
T ss_pred -----cCCCcchhhhccccCCCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCCcc-c-c-chhhhh----hc
Confidence 11000110000000000011245666789999999999999998449999988 3221 1 1 100000 00
Q ss_pred CcccCccCChhHHHHHHHHHHHHhhcCCCceE
Q 004253 498 SEYFGFATDVDAVVYLMLVNDMIHGLYPEAVS 529 (765)
Q Consensus 498 ~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~ 529 (765)
.+-........-+.|..++.+.++...|++.+
T Consensus 158 ~~~~~~~Kt~~Li~ft~eL~~~v~~~rp~lkT 189 (294)
T PF14883_consen 158 QNPADRQKTRALIDFTMELAAAVRRYRPDLKT 189 (294)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHhCccchh
Confidence 00000000111248889999999988877554
No 112
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=87.79 E-value=13 Score=41.18 Aligned_cols=165 Identities=14% Similarity=0.107 Sum_probs=92.6
Q ss_pred HhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCC------------CCCCCCHHHHHHHHHHHhhcCCEEE
Q 004253 337 ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAP------------SSRCGTPDDLKSLIDKAHELGLLVL 404 (765)
Q Consensus 337 ~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~------------~~~~Gt~~efk~LV~~aH~~GI~VI 404 (765)
..+. +.|+.+...++|.++|=-.= ..+|......|=.+ ...|=|.+|+++||+-|.++||.||
T Consensus 18 ~~lk-~~id~ma~~KlN~lhlHLtD----~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vI 92 (329)
T cd06568 18 AEVK-RYIDLLALYKLNVLHLHLTD----DQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVV 92 (329)
T ss_pred HHHH-HHHHHHHHhCCcEEEEEeec----CCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 4444 68899999999999873321 11222222222111 1112279999999999999999999
Q ss_pred Eeec-cccccCCC--cccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEeccccc
Q 004253 405 MDIV-HSHASNNV--LDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 481 (765)
Q Consensus 405 lDvV-~NH~~~~~--~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~ 481 (765)
-.+- +.|+..-- ...+.. .+.....+. ........||..+|++.+++.+.+.-.++-|-- .
T Consensus 93 PEiD~PGH~~a~~~~~p~l~~-~~~~~~~~~------~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~--------~- 156 (329)
T cd06568 93 PEIDMPGHTNAALAAYPELNC-DGKAKPLYT------GIEVGFSSLDVDKPTTYEFVDDVFRELAALTPG--------P- 156 (329)
T ss_pred EecCCcHHHHHHHHhChhhcc-CCCCCcccc------ccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCC--------C-
Confidence 9884 77774310 001111 111111110 111123568999999999999999988874321 1
Q ss_pred ccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeec
Q 004253 482 MMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGED 533 (765)
Q Consensus 482 m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~ 533 (765)
+-|-|.. + ..... ...-..|++.+.+.+++.....+.-.|.
T Consensus 157 --~iHiGgD-E-------~~~~~-~~~~~~f~~~~~~~v~~~Gk~~~~W~d~ 197 (329)
T cd06568 157 --YIHIGGD-E-------AHSTP-HDDYAYFVNRVRAIVAKYGKTPVGWQEI 197 (329)
T ss_pred --eEEEecc-c-------CCCCc-hHHHHHHHHHHHHHHHHCCCeEEEECcc
Confidence 1121221 1 11111 1122378999999998876555444443
No 113
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=86.62 E-value=2.5 Score=47.36 Aligned_cols=116 Identities=19% Similarity=0.178 Sum_probs=64.5
Q ss_pred hhhhhHHHHcCCCEEEECCcccC---CCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccCCCc
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEH---SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVL 417 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~---~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~ 417 (765)
++.|..+|++|+|+|.|-.+.=. |..+. | | -+.|..+|+.|+++||+|||-+.. +.. +
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~--y---d----------F~~lD~~l~~a~~~Gi~viL~~~~-~~~---P 73 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQ--Y---D----------FSWLDRVLDLAAKHGIKVILGTPT-AAP---P 73 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB------------------HHHHHHHHHHHCTT-EEEEEECT-TTS----
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCe--e---e----------cHHHHHHHHHHHhccCeEEEEecc-ccc---c
Confidence 46899999999999998665211 11111 1 1 255889999999999999998762 221 1
Q ss_pred ccCcCCCCCCCCCcccCCCCCcccCCC-CCCCCCCHHHHHHHHHHHHHHHHHcC----CcEEEecc
Q 004253 418 DGLNMFDGTDGHYFHSGSRGYHWMWDS-RLFNYGSWEVLRFLLSNARWWLEEYK----FDGFRFDG 478 (765)
Q Consensus 418 ~~~~~f~g~~~~yf~~~~~g~~~~w~~-~~ln~~~~~v~~~i~~~l~~W~~e~g----vDGFRfD~ 478 (765)
.++.. . .+.....+..|....++. ..+++.+|.+|+++...++..++.|+ |-|+-+|.
T Consensus 74 ~Wl~~--~-~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~N 136 (374)
T PF02449_consen 74 AWLYD--K-YPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDN 136 (374)
T ss_dssp HHHHC--C-SGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECC
T ss_pred cchhh--h-cccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEecc
Confidence 12110 0 011111112222222222 34678899999988888777776665 55666664
No 114
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=86.02 E-value=2.8 Score=45.84 Aligned_cols=61 Identities=25% Similarity=0.394 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 004253 385 TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARW 464 (765)
Q Consensus 385 t~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~ 464 (765)
+..++++-|+.||++|++||+-+ +.. .+ . ....++.-++.+.+++.-
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSi-----GG~--------~~---~-----------------~~~~~~~~~~~fa~sl~~ 104 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISI-----GGA--------NG---H-----------------VDLNHTAQEDNFVDSIVA 104 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEE-----eCC--------CC---c-----------------cccCCHHHHHHHHHHHHH
Confidence 56789999999999999999875 110 00 0 013456778888999999
Q ss_pred HHHHcCCcEEEecc
Q 004253 465 WLEEYKFDGFRFDG 478 (765)
Q Consensus 465 W~~e~gvDGFRfD~ 478 (765)
++++||+||+-||-
T Consensus 105 ~~~~~g~DGiDiD~ 118 (312)
T cd02871 105 IIKEYGFDGLDIDL 118 (312)
T ss_pred HHHHhCCCeEEEec
Confidence 99999999999995
No 115
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=85.95 E-value=6.6 Score=42.24 Aligned_cols=153 Identities=22% Similarity=0.199 Sum_probs=77.3
Q ss_pred hhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHH---HHHHHhhcCCEEEEeeccccccC
Q 004253 338 NFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKS---LIDKAHELGLLVLMDIVHSHASN 414 (765)
Q Consensus 338 ~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~---LV~~aH~~GI~VIlDvV~NH~~~ 414 (765)
+.....+.-||+.|||.|-|- |+-.|++. -| ++--|+..|++. +-+.|...||+|++|+-|+-.-.
T Consensus 63 g~~qD~~~iLK~~GvNyvRlR-vwndP~ds-ng---------n~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwa 131 (403)
T COG3867 63 GVRQDALQILKNHGVNYVRLR-VWNDPYDS-NG---------NGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWA 131 (403)
T ss_pred ChHHHHHHHHHHcCcCeEEEE-EecCCccC-CC---------CccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhcc
Confidence 344468999999999999874 33333321 11 112233455554 55677889999999986643211
Q ss_pred CCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCcccccc
Q 004253 415 NVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFT 494 (765)
Q Consensus 415 ~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~ 494 (765)
+ |. .......|....|+--...|-.|-..++....+| || -.|.|..=-.... +|.
T Consensus 132 D------------Pa-----kQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e-Gi---~pdmVQVGNEtn~----gfl 186 (403)
T COG3867 132 D------------PA-----KQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE-GI---LPDMVQVGNETNG----GFL 186 (403)
T ss_pred C------------hh-----hcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc-CC---CccceEeccccCC----cee
Confidence 1 00 0011122322222223344555555566666653 44 4565532111111 122
Q ss_pred CCCCcccCccCChhHH-HHHHHHHHHHhhcCCCceEE
Q 004253 495 GNYSEYFGFATDVDAV-VYLMLVNDMIHGLYPEAVSI 530 (765)
Q Consensus 495 ~~~~~~~g~~~d~~a~-~~l~~~~~~v~~~~p~~i~i 530 (765)
.-+.+ ..+.+.+ ..+.+...++++..|++.++
T Consensus 187 wp~Ge----~~~f~k~a~L~n~g~~avrev~p~ikv~ 219 (403)
T COG3867 187 WPDGE----GRNFDKMAALLNAGIRAVREVSPTIKVA 219 (403)
T ss_pred ccCCC----CcChHHHHHHHHHHhhhhhhcCCCceEE
Confidence 11111 1133333 56677777888888875543
No 116
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=84.40 E-value=2.8 Score=37.09 Aligned_cols=56 Identities=21% Similarity=0.418 Sum_probs=38.1
Q ss_pred EEEEEecC--CcCeEEEEe---ecCCCCCC-ccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEee
Q 004253 205 ITYREWAP--GAKSASLIG---DFNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMD 266 (765)
Q Consensus 205 v~FrvWAP--~A~~V~L~g---dFN~w~~~-~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~ 266 (765)
++|++=+. -.+.|.|+| ++++|++. +.+|...+++.|++.+.-.. +. ...|||.+.
T Consensus 3 v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~-~~-----~~eYKy~~~ 64 (95)
T cd05808 3 VTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPA-GT-----AIEYKYIKK 64 (95)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCC-CC-----eEEEEEEEE
Confidence 45655543 357899999 57899975 57898888899988775322 11 246777654
No 117
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=82.24 E-value=2.6 Score=46.71 Aligned_cols=95 Identities=17% Similarity=0.204 Sum_probs=58.5
Q ss_pred HHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 004253 391 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (765)
Q Consensus 391 ~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~g 470 (765)
..|++||++|++|+-=+.+...... .+.+ ..| -.+++.+..+++.|.-.++.||
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~~-------------~~~~------------~lL-~~~~~~~~~~a~kLv~lak~yG 103 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQV-------------EWLE------------DFL-KKDEDGSFPVADKLVEVAKYYG 103 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCch-------------HHHH------------HHh-ccCcccchHHHHHHHHHHHHhC
Confidence 5789999999999886543322000 0000 001 0113444566777777888899
Q ss_pred CcEEEecccccccccccCccccccCCCCcccCccCChhHH-HHHHHHHHHHhhcCCCceEE
Q 004253 471 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAV-VYLMLVNDMIHGLYPEAVSI 530 (765)
Q Consensus 471 vDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~-~~l~~~~~~v~~~~p~~i~i 530 (765)
+||+=+|.=.... ...+.+.+ .|++.+.+.+++..|+..+|
T Consensus 104 fDGw~iN~E~~~~-------------------~~~~~~~l~~F~~~L~~~~~~~~~~~~v~ 145 (339)
T cd06547 104 FDGWLINIETELG-------------------DAEKAKRLIAFLRYLKAKLHENVPGSLVI 145 (339)
T ss_pred CCceEeeeeccCC-------------------cHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 9999998632210 11233343 79999999999988876554
No 118
>PRK12568 glycogen branching enzyme; Provisional
Probab=81.30 E-value=3.6 Score=49.98 Aligned_cols=57 Identities=26% Similarity=0.293 Sum_probs=43.3
Q ss_pred hhhcccccCCcEEeCCc-EEEEEecCCcCeEEEEeecCCCCCCccCCcc-CCCceEEEEeCC
Q 004253 188 AFSRGYEKFGFIRSDTG-ITYREWAPGAKSASLIGDFNNWNPNADIMTQ-NEFGVWEIFLPN 247 (765)
Q Consensus 188 ~fa~gy~~lG~~~~~~g-v~FrvWAP~A~~V~L~gdFN~w~~~~~~m~~-~~~GvW~i~lp~ 247 (765)
.+...+.-||.|..++| +.+|+|-|.|.+|.|+.. . .....+|++ .+.|+|+..+|.
T Consensus 22 ~~~~p~~~lg~h~~~~~~~~~r~~~p~a~~v~~~~~-~--~~~~~~~~~~~~~g~f~~~~~~ 80 (730)
T PRK12568 22 LPADAFAVLGPHPQADGRRQVRVLAPGAEAMGLIDG-R--GKLLARMQASPIDGVFEGILPA 80 (730)
T ss_pred CcCCchHhcCCcCCCCCcEEEEEECCCCcEEEEEec-C--CccccccEecCCCCeEEEecCC
Confidence 45566778999988888 699999999999999731 1 111237887 457999999984
No 119
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=79.62 E-value=14 Score=41.19 Aligned_cols=78 Identities=22% Similarity=0.230 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHhhcCCEEEEee-ccccccCCC--cccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 004253 385 TPDDLKSLIDKAHELGLLVLMDI-VHSHASNNV--LDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSN 461 (765)
Q Consensus 385 t~~efk~LV~~aH~~GI~VIlDv-V~NH~~~~~--~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~ 461 (765)
|.+|+|++|+-|.++||.||-.| ++.|+..-- ...+... +....+... .......||..+|++.+++.+.
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~-~~~~~~~~~------~~~~~~~L~~~~~~t~~f~~~l 156 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCT-GGPGSVVSV------QGVVSNVLCPGKPETYTFLEDV 156 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCC-CCCCccccc------cCcCCCccCCCChhHHHHHHHH
Confidence 79999999999999999999998 477874311 0011111 101111000 0112356899999999999999
Q ss_pred HHHHHHHc
Q 004253 462 ARWWLEEY 469 (765)
Q Consensus 462 l~~W~~e~ 469 (765)
+.-.++-|
T Consensus 157 l~E~~~lF 164 (357)
T cd06563 157 LDEVAELF 164 (357)
T ss_pred HHHHHHhC
Confidence 99998854
No 120
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=79.03 E-value=2.3 Score=46.41 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=36.6
Q ss_pred hhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccc
Q 004253 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (765)
Q Consensus 342 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~N 410 (765)
.-|+...+.|++-|...=...... . . +-..-|++|++.||+.||+||+||-+.
T Consensus 20 ~Yi~~~~~~Gf~~IFtsl~~~~~~-~-~--------------~~~~~~~ell~~Anklg~~vivDvnPs 72 (360)
T COG3589 20 AYIDRMHKYGFKRIFTSLLIPEED-A-E--------------LYFHRFKELLKEANKLGLRVIVDVNPS 72 (360)
T ss_pred HHHHHHHHcCccceeeecccCCch-H-H--------------HHHHHHHHHHHHHHhcCcEEEEEcCHH
Confidence 467777889999986532221110 0 0 113569999999999999999998754
No 121
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=78.20 E-value=10 Score=41.33 Aligned_cols=89 Identities=22% Similarity=0.269 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 004253 389 LKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEE 468 (765)
Q Consensus 389 fk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e 468 (765)
..++++.||++|++|++=|- +... . .|+ ...|+ --..+++.|+-+++++.-++++
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~-~~~~-~------~~~---~~~~~--------------~~l~~~~~r~~fi~~iv~~l~~ 101 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVIT-NLTN-G------NFD---SELAH--------------AVLSNPEARQRLINNILALAKK 101 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEe-cCCC-C------CCC---HHHHH--------------HHhcCHHHHHHHHHHHHHHHHH
Confidence 36899999999999997653 1110 0 000 00000 0134688889899999999999
Q ss_pred cCCcEEEecccccccccccCccccccCCCCcccCccCChh-HHHHHHHHHHHHhhc
Q 004253 469 YKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGL 523 (765)
Q Consensus 469 ~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-a~~~l~~~~~~v~~~ 523 (765)
||+||+-+|--. + ...+.+ -..|+++++..+++.
T Consensus 102 ~~~DGidiDwE~-~--------------------~~~d~~~~~~fl~~lr~~l~~~ 136 (313)
T cd02874 102 YGYDGVNIDFEN-V--------------------PPEDREAYTQFLRELSDRLHPA 136 (313)
T ss_pred hCCCcEEEeccc-C--------------------CHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999521 1 011222 247888888888754
No 122
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=78.19 E-value=15 Score=40.20 Aligned_cols=123 Identities=18% Similarity=0.174 Sum_probs=71.5
Q ss_pred HhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCC-----CCCCCCHHHHHHHHHHHhhcCCEEEEee-ccc
Q 004253 337 ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAP-----SSRCGTPDDLKSLIDKAHELGLLVLMDI-VHS 410 (765)
Q Consensus 337 ~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~-----~~~~Gt~~efk~LV~~aH~~GI~VIlDv-V~N 410 (765)
..+. +.|+.++.+++|.++|==. ...+|.+....|=.+ ...|=|.+|+|++|+-|.++||.||-.| ++.
T Consensus 18 ~~ik-~~Id~ma~~KlN~lh~Hlt----Dd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PG 92 (311)
T cd06570 18 AVIK-RQLDAMASVKLNVFHWHLT----DDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPG 92 (311)
T ss_pred HHHH-HHHHHHHHhCCeEEEEEEe----cCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCcc
Confidence 3344 6889999999997776211 001222222222111 1112389999999999999999999988 478
Q ss_pred cccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 004253 411 HASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEY 469 (765)
Q Consensus 411 H~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~ 469 (765)
|+..-. .+...+......+.. .+ .+......+|..+|++.+++.+.+.-+++-|
T Consensus 93 H~~a~~-~~ypel~~~~~~~~~--~~--~~~~~~~~l~~~~p~t~~f~~~l~~E~~~lF 146 (311)
T cd06570 93 HASAIA-VAYPELASGPGPYVI--ER--GWGVFEPLLDPTNEETYTFLDNLFGEMAELF 146 (311)
T ss_pred chHHHH-HhCHHhccCCCcccc--cc--ccccCCCccCCCChhHHHHHHHHHHHHHHhC
Confidence 875311 000000000000000 00 1111234689999999999999999998754
No 123
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=76.67 E-value=24 Score=40.67 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHhhcCCEEEEeec-cccccCCC------cccCcCCCCCC---CCCcccCCC---C--CcccCCCCCCCC
Q 004253 385 TPDDLKSLIDKAHELGLLVLMDIV-HSHASNNV------LDGLNMFDGTD---GHYFHSGSR---G--YHWMWDSRLFNY 449 (765)
Q Consensus 385 t~~efk~LV~~aH~~GI~VIlDvV-~NH~~~~~------~~~~~~f~g~~---~~yf~~~~~---g--~~~~w~~~~ln~ 449 (765)
|.+|+|++|+-|+++||.||-.|- +.|+..-- ...+.. .|.. ..|...+.. . ....|....||-
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~-~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p 173 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMA-AGKPAEAEEYRLSDPADTSQYLSVQFYTDNVINP 173 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhc-cCCccccccccccCcccccccccccccccccccC
Confidence 799999999999999999999884 78875310 000100 0110 011111111 0 011233467999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 004253 450 GSWEVLRFLLSNARWWLEE 468 (765)
Q Consensus 450 ~~~~v~~~i~~~l~~W~~e 468 (765)
.++++.+|+.+.+.-.++-
T Consensus 174 ~~~~ty~fl~~vl~Ev~~l 192 (445)
T cd06569 174 CMPSTYRFVDKVIDEIARM 192 (445)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 9999999999999988873
No 124
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=76.25 E-value=57 Score=35.51 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=57.2
Q ss_pred hHHHHcCCCEEEECCcccC-CCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCC
Q 004253 345 PRIKRLGYNAVQIMAVQEH-SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF 423 (765)
Q Consensus 345 ~yLk~LGvt~I~L~Pi~e~-~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f 423 (765)
.+.++.|+++|-|-=+... .+...|+-. ....+...++.-|++|+++|++||+=+
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~--------~~~~~~~~~~~~i~~lk~~G~kViiS~---------------- 74 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGS--------YPLDQGGWIKSDIAALRAAGGDVIVSF---------------- 74 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCC--------CCcccchhHHHHHHHHHHcCCeEEEEe----------------
Confidence 4677899999987633222 223345421 011135678888999999999999832
Q ss_pred CCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecc
Q 004253 424 DGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 478 (765)
Q Consensus 424 ~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~ 478 (765)
-|....++.. +..-++.+.+++.-.++.|++||+-||-
T Consensus 75 GG~~g~~~~~-----------------~~~~~~~~~~a~~~~i~~y~~dgiDfDi 112 (294)
T cd06543 75 GGASGTPLAT-----------------SCTSADQLAAAYQKVIDAYGLTHLDFDI 112 (294)
T ss_pred cCCCCCcccc-----------------CcccHHHHHHHHHHHHHHhCCCeEEEec
Confidence 1111111110 2233456666777788899999999995
No 125
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=75.45 E-value=3.4 Score=44.97 Aligned_cols=49 Identities=22% Similarity=0.474 Sum_probs=30.1
Q ss_pred hhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecccccc
Q 004253 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (765)
Q Consensus 342 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~ 413 (765)
.-+++||+||+|+|-+--|-... .-+ +..+.+.+.||.||+||---+.+
T Consensus 57 rDi~~l~~LgiNtIRVY~vdp~~--------------------nHd---~CM~~~~~aGIYvi~Dl~~p~~s 105 (314)
T PF03198_consen 57 RDIPLLKELGINTIRVYSVDPSK--------------------NHD---ECMSAFADAGIYVILDLNTPNGS 105 (314)
T ss_dssp HHHHHHHHHT-SEEEES---TTS----------------------H---HHHHHHHHTT-EEEEES-BTTBS
T ss_pred HhHHHHHHcCCCEEEEEEeCCCC--------------------CHH---HHHHHHHhCCCEEEEecCCCCcc
Confidence 46899999999999876554322 113 44455677999999998755433
No 126
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=74.94 E-value=5.2 Score=43.35 Aligned_cols=66 Identities=27% Similarity=0.447 Sum_probs=37.0
Q ss_pred hhhhHHHHcCCCEEEECCcccCCCC---CCCCCcc--------ccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccc
Q 004253 342 DVLPRIKRLGYNAVQIMAVQEHSYY---ASFGYHV--------TNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (765)
Q Consensus 342 ~~L~yLk~LGvt~I~L~Pi~e~~~~---~~~GY~~--------~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~N 410 (765)
.-|+.+|+.|||.|+++-+.+.... +.-|+.+ .||..+++.| -+.+.++|+.|.++||.+- +|+-
T Consensus 34 ~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~~--lv~~ 109 (289)
T PF13204_consen 34 QYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEAA--LVPF 109 (289)
T ss_dssp HHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EEE--EESS
T ss_pred HHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeEE--EEEE
Confidence 4699999999999999766553211 1223322 3455555444 5778899999999999984 6655
Q ss_pred c
Q 004253 411 H 411 (765)
Q Consensus 411 H 411 (765)
|
T Consensus 110 w 110 (289)
T PF13204_consen 110 W 110 (289)
T ss_dssp -
T ss_pred E
Confidence 5
No 127
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=74.41 E-value=2.6 Score=46.34 Aligned_cols=58 Identities=28% Similarity=0.331 Sum_probs=36.0
Q ss_pred hhhhhHHHHcCCCEEEECCccc-CCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecc
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQE-HSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e-~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~ 409 (765)
++.|..+|++|+|+|..-=.+. |.... | ..| |....||..|++.|+++||.|||-.=+
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~~~--g--~~d-------f~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEPEE--G--QFD-------FTGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSSBT--T--B----------SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred HHHHHHHHhCCcceEEEeccccccCCCC--C--ccc-------ccchhhHHHHHHHHHHcCcEEEecccc
Confidence 3689999999999998742222 11100 1 112 223489999999999999999998643
No 128
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=74.35 E-value=30 Score=37.23 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=39.3
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCC-ccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeec
Q 004253 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGY-HVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 408 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY-~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV 408 (765)
++.... .-+|+-+++|+..|.+ +-.-++ |+. ...|+..+.+. .++++||+-|+++|++|+|=+.
T Consensus 30 ~t~~~k-~yIDfAa~~G~eYvlv----D~GW~~-~~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~lw~~ 94 (273)
T PF10566_consen 30 TTETQK-RYIDFAAEMGIEYVLV----DAGWYG-WEKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWLWYH 94 (273)
T ss_dssp SHHHHH-HHHHHHHHTT-SEEEE----BTTCCG-S--TTT--TT-B-TT------HHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHH-HHHHHHHHcCCCEEEe----cccccc-ccccccccccccCCc----cCHHHHHHHHHHcCCCEEEEEe
Confidence 666666 6899999999999987 221111 121 23444444444 7999999999999999998654
No 129
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=74.04 E-value=12 Score=33.63 Aligned_cols=59 Identities=20% Similarity=0.408 Sum_probs=41.5
Q ss_pred EEEEEecCC---cCeEEEEee---cCCCCCC-ccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeCC
Q 004253 205 ITYREWAPG---AKSASLIGD---FNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP 268 (765)
Q Consensus 205 v~FrvWAP~---A~~V~L~gd---FN~w~~~-~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~ 268 (765)
++|++-.|. -+.|+|+|+ ..+|++. +.+|...++..|++.++-..... ...|||.+...
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~-----~ieYKyvi~~~ 67 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSF-----PFEYKYIIANK 67 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCc-----cEEEEEEEEeC
Confidence 789999985 468899985 4689864 57898888899988876432111 24788876544
No 130
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=73.35 E-value=6.3 Score=47.98 Aligned_cols=90 Identities=12% Similarity=0.230 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhcCCEEEEeeccccccCC--Ccc-----cCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHH--HHH
Q 004253 387 DDLKSLIDKAHELGLLVLMDIVHSHASNN--VLD-----GLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEV--LRF 457 (765)
Q Consensus 387 ~efk~LV~~aH~~GI~VIlDvV~NH~~~~--~~~-----~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v--~~~ 457 (765)
.+++++-+.|+++||.++-|+.+--.... ... .+..--|.+|.+|... |. .|+.+.+|+..=+- -+.
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIgVa~dSaDvWa~p~lF~ld~~aGAPPD~FS~~--GQ--nWG~P~YnW~~l~~dgY~W 349 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIGVDKASVDTWMHPKLFRMDTSTGAPPDAFDAN--GQ--NWGFPTYDWEEMAEDDYAW 349 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCCcCCCCCCCCcc--cC--cCCCCCcCHHHHHhcCcHH
Confidence 67888899999999999999986533322 111 1122357777788543 33 47778877642110 012
Q ss_pred HHHHHHHHHHHcCCcEEEecccccc
Q 004253 458 LLSNARWWLEEYKFDGFRFDGVTSM 482 (765)
Q Consensus 458 i~~~l~~W~~e~gvDGFRfD~v~~m 482 (765)
.++.+++-++ .+|++|+|.+-.+
T Consensus 350 Wr~Rlr~~~~--~~dalRIDH~~Gf 372 (745)
T PLN03236 350 WRARMQHLEQ--FFSAIRIDHILGF 372 (745)
T ss_pred HHHHHHHHHH--hCCeEEeechhhh
Confidence 2333333333 5799999987654
No 131
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=72.88 E-value=7.6 Score=40.78 Aligned_cols=46 Identities=26% Similarity=0.463 Sum_probs=35.6
Q ss_pred hhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEee
Q 004253 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDI 407 (765)
Q Consensus 342 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDv 407 (765)
+-|.++|+||+++|+|+-=+-. + +.++..++|+.++++|++|+-.+
T Consensus 75 ~Yl~~~k~lGf~~IEiS~G~~~---------------i-----~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 75 EYLNECDELGFEAVEISDGSME---------------I-----SLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHHcCCCEEEEcCCccC---------------C-----CHHHHHHHHHHHHhCCCeEeccc
Confidence 4566999999999998642110 0 24888999999999999999664
No 132
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=72.72 E-value=9.2 Score=34.80 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=41.4
Q ss_pred cccCCcEEeCCcEEEEEecCC--cCeEEEEeecCC--CCCCccCCccCC----CceEEEEeCCCCCCCCCCCCCCEEEEE
Q 004253 193 YEKFGFIRSDTGITYREWAPG--AKSASLIGDFNN--WNPNADIMTQNE----FGVWEIFLPNNADGSPPIPHGSRVKIH 264 (765)
Q Consensus 193 y~~lG~~~~~~gv~FrvWAP~--A~~V~L~gdFN~--w~~~~~~m~~~~----~GvW~i~lp~~~~G~~~~~~g~~y~~~ 264 (765)
+.++|+ +.+++|++++. +++|.|+..-+. +.....+|.+.. ...|++.|+... |. ..|.|.
T Consensus 10 ~~p~ga----~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~-~~------~~Y~F~ 78 (116)
T cd02857 10 AYPYGA----DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPT-GR------LRYYFE 78 (116)
T ss_pred eEEcCC----CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCC-cE------EEEEEE
Confidence 347887 56899999874 678888753221 233456787643 247999998542 32 367777
Q ss_pred eeC
Q 004253 265 MDT 267 (765)
Q Consensus 265 ~~~ 267 (765)
+..
T Consensus 79 l~~ 81 (116)
T cd02857 79 LVD 81 (116)
T ss_pred EEc
Confidence 754
No 133
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=70.62 E-value=9.3 Score=35.66 Aligned_cols=56 Identities=18% Similarity=0.501 Sum_probs=38.8
Q ss_pred EEEEEecC---CcCeEEEEee---cCCCCCC-ccCCccC--CCceEEEEeCCCCCCCCCCCCCCEEEEEee
Q 004253 205 ITYREWAP---GAKSASLIGD---FNNWNPN-ADIMTQN--EFGVWEIFLPNNADGSPPIPHGSRVKIHMD 266 (765)
Q Consensus 205 v~FrvWAP---~A~~V~L~gd---FN~w~~~-~~~m~~~--~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~ 266 (765)
++|++-+| -.+.|.|+|+ +++|++. +.+|... ....|++.+.-.. +. -..|||.+.
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~-~~-----~veYkY~~~ 67 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPR-GV-----DFQYRYFVA 67 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECC-CC-----eEEEEEEEE
Confidence 78999886 3568899997 8899864 5689876 6789987765221 11 246777653
No 134
>PLN02950 4-alpha-glucanotransferase
Probab=70.32 E-value=10 Score=47.48 Aligned_cols=90 Identities=17% Similarity=0.286 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhcCCEEEEeeccccc--cCCCccc-----CcCCCCCCCCCcccCCCCCcccCCCCCCCCCCH--HHHHH
Q 004253 387 DDLKSLIDKAHELGLLVLMDIVHSHA--SNNVLDG-----LNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSW--EVLRF 457 (765)
Q Consensus 387 ~efk~LV~~aH~~GI~VIlDvV~NH~--~~~~~~~-----~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~--~v~~~ 457 (765)
.+++++.+.|+++||+++.|+.+--. |.+.... +..--|.+|.+|... |. .|+.+.+|+..= .--+.
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpigV~~dSaDvWa~p~lF~l~~~aGaPPD~Fs~~--GQ--~WG~P~ynw~~l~~~gy~w 536 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKN--GQ--NWGFPTYNWEEMSKDNYAW 536 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCccCCCCCcCCcc--cc--cCCCCCcCHHHHHhcCcHH
Confidence 67888999999999999999986433 3222111 122347777788543 32 477787776421 11123
Q ss_pred HHHHHHHHHHHcCCcEEEecccccc
Q 004253 458 LLSNARWWLEEYKFDGFRFDGVTSM 482 (765)
Q Consensus 458 i~~~l~~W~~e~gvDGFRfD~v~~m 482 (765)
.++-+++-++ .+|++|+|.+-.+
T Consensus 537 w~~Rlr~~~~--~~d~lRIDH~~Gf 559 (909)
T PLN02950 537 WRARLTQMAK--YFTAYRIDHILGF 559 (909)
T ss_pred HHHHHHHHHH--hCCEEEEecchhh
Confidence 4444444444 7899999987654
No 135
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=70.10 E-value=73 Score=34.29 Aligned_cols=158 Identities=13% Similarity=0.111 Sum_probs=92.1
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccCCCcccC
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL 420 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~ 420 (765)
+..+.-|.+-+++.|-+=|-.. .+..+=.+++|+|.+. +.|..+|.=+-+.-+.+-..-+-
T Consensus 33 d~~~~~i~~~~f~llVVDps~~---------------g~~~~~~~~eelr~~~----~gg~~pIAYlsIg~ae~yR~Ywd 93 (300)
T COG2342 33 DAYINEILNSPFDLLVVDPSYC---------------GPFNTPWTIEELRTKA----DGGVKPIAYLSIGEAESYRFYWD 93 (300)
T ss_pred cchHHHHhcCCCcEEEEecccc---------------CCCCCcCcHHHHHHHh----cCCeeEEEEEechhhhhhhhHhh
Confidence 4677888888888887666322 1223334688888764 45667776555543322110000
Q ss_pred cCCCCCCCCCcccCCCCCcccCC-CCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCc
Q 004253 421 NMFDGTDGHYFHSGSRGYHWMWD-SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSE 499 (765)
Q Consensus 421 ~~f~g~~~~yf~~~~~g~~~~w~-~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~ 499 (765)
..+....+.|... ..+.|. .-...|-.|+=+..|.+.+...++ .|+||.-+|.|....|.. ....
T Consensus 94 ~~w~~~~p~wLg~----edP~W~Gny~VkYW~~eWkdii~~~l~rL~d-~GfdGvyLD~VD~y~Y~~---------~~~~ 159 (300)
T COG2342 94 KYWLTGRPDWLGE----EDPEWPGNYAVKYWEPEWKDIIRSYLDRLID-QGFDGVYLDVVDAYWYVE---------WNDR 159 (300)
T ss_pred hhhhcCCcccccC----CCCCCCCCceeeccCHHHHHHHHHHHHHHHH-ccCceEEEeeechHHHHH---------Hhcc
Confidence 0111111222211 112232 234667788988999999998888 799999999997653321 0011
Q ss_pred ccCccCChhHHHHHHHHHHHHhhcCCCceEEe
Q 004253 500 YFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 531 (765)
Q Consensus 500 ~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~ia 531 (765)
.-+.+..-.-+.|+..+.+.++..+|.+.+|-
T Consensus 160 ~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi~ 191 (300)
T COG2342 160 ETGVNAAKKMVKFIAAIAEYARAANPLFRVIP 191 (300)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 11222333345789999999999999966654
No 136
>PRK14705 glycogen branching enzyme; Provisional
Probab=69.54 E-value=9.3 Score=49.14 Aligned_cols=54 Identities=26% Similarity=0.308 Sum_probs=42.8
Q ss_pred hhcccccCCcEEeCCcE-EEEEecCCcCeEEEEeecCCCCCCccCCccCCCceEEEEeCC
Q 004253 189 FSRGYEKFGFIRSDTGI-TYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPN 247 (765)
Q Consensus 189 fa~gy~~lG~~~~~~gv-~FrvWAP~A~~V~L~gdFN~w~~~~~~m~~~~~GvW~i~lp~ 247 (765)
+...+.-||.|..++|+ .+|+|-|.|++|.|+.. ....+|++...|+|+..+|.
T Consensus 516 ~~~p~~~lg~h~~~~~~~~~r~~~p~a~~v~~~~~-----~~~~~~~~~~~g~~~~~~~~ 570 (1224)
T PRK14705 516 YHAPHSVLGAHLDDHGHVTVRTVKHLAKAVSVVTA-----AGRVPMTHEAHGVWAAVLEP 570 (1224)
T ss_pred cCCChHhcCCcCCCCceEEEEEECCCCeEEEEEeC-----CCceeeeeCCCCEEEEeccc
Confidence 45556689999888885 79999999999999742 22236888778999999984
No 137
>TIGR03356 BGL beta-galactosidase.
Probab=68.67 E-value=29 Score=39.83 Aligned_cols=102 Identities=14% Similarity=0.157 Sum_probs=63.7
Q ss_pred CCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 332 IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 332 ~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
.+..|.-.. +-|..||+||+|++-+.=-+..-. .-|-. . ..-...+-.+.+|++|.++||++|+++.+
T Consensus 49 a~d~y~~y~-eDi~l~~~~G~~~~R~si~Wsri~--p~g~~-----~--~n~~~~~~y~~~i~~l~~~gi~pivtL~H-- 116 (427)
T TIGR03356 49 ACDHYHRYE-EDVALMKELGVDAYRFSIAWPRIF--PEGTG-----P--VNPKGLDFYDRLVDELLEAGIEPFVTLYH-- 116 (427)
T ss_pred cccHHHhHH-HHHHHHHHcCCCeEEcccchhhcc--cCCCC-----C--cCHHHHHHHHHHHHHHHHcCCeeEEeecc--
Confidence 334555555 689999999999987642111100 00100 0 01112466889999999999999999874
Q ss_pred ccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 004253 412 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (765)
Q Consensus 412 ~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~g 470 (765)
.. .|.++... . -+.++++.+.+.+.++.-+++||
T Consensus 117 fd-------------~P~~l~~~-g-----------Gw~~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 117 WD-------------LPQALEDR-G-----------GWLNRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred CC-------------ccHHHHhc-C-----------CCCChHHHHHHHHHHHHHHHHhC
Confidence 21 12222211 1 14567888888888888888777
No 138
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=68.16 E-value=8.4 Score=43.86 Aligned_cols=59 Identities=29% Similarity=0.392 Sum_probs=39.4
Q ss_pred HhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccC-CCCCCC---CHHHHHHHHHHHhhcCCEEEEeec
Q 004253 340 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFA-PSSRCG---TPDDLKSLIDKAHELGLLVLMDIV 408 (765)
Q Consensus 340 ~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a-~~~~~G---t~~efk~LV~~aH~~GI~VIlDvV 408 (765)
+++.+.++|+.|+|+|-|.= ||.....+. .+|.+= ...=+.+.|+.|.++||+|++|+.
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi----------~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H 137 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPI----------GYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLH 137 (407)
T ss_pred hhhHHHHHHHcCCcEEEccc----------chhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEec
Confidence 35789999999999998742 222211110 334332 223566779999999999999974
No 139
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=68.04 E-value=8 Score=34.42 Aligned_cols=59 Identities=22% Similarity=0.422 Sum_probs=38.9
Q ss_pred EEEEEecC--CcCeEEEEeecC---CCCC-CccCCccC----CCceEEEEeCCCCCCCCCCCCCCEEEEEeeCCC
Q 004253 205 ITYREWAP--GAKSASLIGDFN---NWNP-NADIMTQN----EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS 269 (765)
Q Consensus 205 v~FrvWAP--~A~~V~L~gdFN---~w~~-~~~~m~~~----~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~~ 269 (765)
|+|++-+. -.+.|.|+|+.. +|++ .+.+|... ...+|++.|.-.. +. ...|||.+...+
T Consensus 4 V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~-~~-----~~eYKy~i~~~~ 72 (96)
T PF00686_consen 4 VTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPA-GT-----PFEYKYVIKDAD 72 (96)
T ss_dssp EEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEET-TS-----EEEEEEEEEETT
T ss_pred EEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcC-CC-----EEEEEEEEEeCC
Confidence 67887433 346899999764 7997 56789875 4589999885322 21 237788775443
No 140
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=66.99 E-value=9.7 Score=42.57 Aligned_cols=59 Identities=20% Similarity=0.361 Sum_probs=38.4
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCC-CCHHHHHHHHHHHhhcCCEEEEeeccc
Q 004253 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRC-GTPDDLKSLIDKAHELGLLVLMDIVHS 410 (765)
Q Consensus 334 Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~-Gt~~efk~LV~~aH~~GI~VIlDvV~N 410 (765)
.++.... +.|...+++|++.|+.+=.. |+..- -..++|++|++.||+.||.||+||-+.
T Consensus 11 ~~~~~~~-~yi~~a~~~Gf~~iFTSL~i-----------------pe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 11 SSFEENK-AYIEKAAKYGFKRIFTSLHI-----------------PEDDPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp S-HHHHH-HHHHHHHCTTEEEEEEEE--------------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CCHHHHH-HHHHHHHHCCCCEEECCCCc-----------------CCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 3555555 57778889999999764111 11111 125899999999999999999999754
No 141
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=66.64 E-value=11 Score=45.84 Aligned_cols=59 Identities=14% Similarity=0.185 Sum_probs=47.4
Q ss_pred CCCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCC----CCCCccccccCCCCCCCCHHHHH
Q 004253 331 PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYA----SFGYHVTNFFAPSSRCGTPDDLK 390 (765)
Q Consensus 331 ~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~----~~GY~~~~~~a~~~~~Gt~~efk 390 (765)
-++|+|..+. +.++.+++.|.+.|||+||.+...++ +--|.+.+=|+.+|-|=+++.|-
T Consensus 77 ~GIGDfgdL~-~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L~ 139 (745)
T PLN03236 77 VGAGDFGDLE-ALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKELV 139 (745)
T ss_pred CCcccHHHHH-HHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHhh
Confidence 4789999977 79999999999999999998864222 23688888889888887766553
No 142
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=63.76 E-value=8 Score=42.63 Aligned_cols=125 Identities=14% Similarity=0.192 Sum_probs=69.8
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccC------CCC----CCCCHHHHHHHHHHHhhcCCEEE
Q 004253 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFA------PSS----RCGTPDDLKSLIDKAHELGLLVL 404 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a------~~~----~~Gt~~efk~LV~~aH~~GI~VI 404 (765)
+...+. +.|+.+..+++|.++|=---. .+|.+....|=. -.+ .+=|.+|+++||+.|+++||.||
T Consensus 16 ~~~~ik-~~id~ma~~k~N~lhlhl~D~----~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VI 90 (351)
T PF00728_consen 16 SVDTIK-RLIDQMAYYKLNVLHLHLSDD----QGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVI 90 (351)
T ss_dssp -HHHHH-HHHHHHHHTT-SEEEEEEESS----TCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHH-HHHHHHHHcCCcEEEEEEecC----CCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCcee
Confidence 334555 689999999999998732110 112211111100 001 12378999999999999999999
Q ss_pred Eee-ccccccCCCc--ccCcCC-CCCCCCCcccCCCCCcccCC--CCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 004253 405 MDI-VHSHASNNVL--DGLNMF-DGTDGHYFHSGSRGYHWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYK 470 (765)
Q Consensus 405 lDv-V~NH~~~~~~--~~~~~f-~g~~~~yf~~~~~g~~~~w~--~~~ln~~~~~v~~~i~~~l~~W~~e~g 470 (765)
-.| ++.|+..--. ..+... ...+..+.. ...+. ...+|..+|++.+++.+.+.-.++-+.
T Consensus 91 Peid~PGH~~~~l~~~p~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~ 156 (351)
T PF00728_consen 91 PEIDTPGHAEAWLKAYPELGCSAWPEDKSWPN------STCWYPDNGVLDPSNPETYEFLKDLLDEVADLFP 156 (351)
T ss_dssp EEEEESSS-HHHHHHHHHHCCCHTTCSSSCEE------EETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHT
T ss_pred eeccCchHHHHHHHhCchhhcccccccccccc------ccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCC
Confidence 998 4788754210 000000 000111110 01111 136899999999999999999998766
No 143
>PLN03059 beta-galactosidase; Provisional
Probab=62.86 E-value=12 Score=46.20 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=39.8
Q ss_pred hhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeec
Q 004253 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 408 (765)
Q Consensus 342 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV 408 (765)
++|..+|++|+|+|..-= .|.++--. .-.-.|.+..||.++|+.|++.||.|||=.=
T Consensus 63 d~L~k~Ka~GlNtV~tYV--------~Wn~HEp~--~G~~dF~G~~DL~~Fl~la~e~GLyvilRpG 119 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYV--------FWNGHEPS--PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIG 119 (840)
T ss_pred HHHHHHHHcCCCeEEEEe--------cccccCCC--CCeeeccchHHHHHHHHHHHHcCCEEEecCC
Confidence 588899999999997532 12221100 0011345679999999999999999999743
No 144
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=62.07 E-value=96 Score=34.77 Aligned_cols=133 Identities=14% Similarity=0.048 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCC--CcccCC----------CCCCCCCCHH
Q 004253 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRG--YHWMWD----------SRLFNYGSWE 453 (765)
Q Consensus 386 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g--~~~~w~----------~~~ln~~~~~ 453 (765)
.+.||++++++|++|-++++-+. |.+........ ..+.. .+-.+.... ....++ ...--.+..+
T Consensus 78 i~~~~~lad~vH~~Ga~i~~QL~--H~Gr~~~~~~~-~~~~~-~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~e 153 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAVQLW--HTGRISHASLQ-PGGQA-PVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEE 153 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEEecc--CCCCCCCcccC-CCCCC-eECCCCcCcCcccccccccccccccCCCCCccCCHHH
Confidence 68899999999999999999765 66554311100 00100 000000000 000000 0000111122
Q ss_pred ---HHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCC
Q 004253 454 ---VLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPE 526 (765)
Q Consensus 454 ---v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~ 526 (765)
+.+.+..+++.-. +.|+||.-+.++...+-... +.+.++..-++|.|..+ ..+.|+.++-+.|++.-++
T Consensus 154 I~~ii~~f~~AA~rA~-~AGfDGVEIh~ahGyLl~qF-LSp~~N~RtDeYGGslE--NR~Rf~~Eiv~aVr~~vg~ 225 (362)
T PRK10605 154 IPGIVNDFRQAIANAR-EAGFDLVELHSAHGYLLHQF-LSPSSNQRTDQYGGSVE--NRARLVLEVVDAGIAEWGA 225 (362)
T ss_pred HHHHHHHHHHHHHHHH-HcCCCEEEEcccccchHHHh-cCCcCCCCCCcCCCcHH--HHHHHHHHHHHHHHHHcCC
Confidence 2233333444434 48999999999875432211 11222233345544333 3467888888888876543
No 145
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=61.89 E-value=38 Score=37.55 Aligned_cols=136 Identities=17% Similarity=0.171 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCC--C-CCCCcccCCCCCcccCCCCCCCCCCHHHHHHH---H
Q 004253 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDG--T-DGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFL---L 459 (765)
Q Consensus 386 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g--~-~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i---~ 459 (765)
.+.||++++++|++|-++++-+. |.+............ . .+....... . .++.+.-..+..++.+.+ .
T Consensus 79 i~~~k~l~~~vh~~Ga~i~~QL~--H~G~~~~~~~~~~~~~~psa~~~~~~~~---~-~~~~~~~~mt~~eI~~ii~~f~ 152 (341)
T PF00724_consen 79 IPGLKKLADAVHAHGAKIIAQLW--HAGRQANPEYSGDPPVGPSAPSALPSPI---K-FMGYPPREMTEEEIEEIIEDFA 152 (341)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEE----GGGSSGCCSGGGCEESSCSSSSSTTT---T-ETSCEEEE--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccceeecc--ccccccCcccCCCCccCcccccccCccc---c-cCCCCCeeCCHHHHHHHHHHHH
Confidence 68999999999999999999976 454432111111000 0 000000000 0 000011111222333222 2
Q ss_pred HHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEe
Q 004253 460 SNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 531 (765)
Q Consensus 460 ~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~ia 531 (765)
.+++ .+.+-|+||.-+.++...+-... +.+.++..-++|.|.. .....|+.++.+.|++..++-+.|+
T Consensus 153 ~AA~-~A~~AGfDGVEIH~ahGyLl~qF-LSp~~N~RtDeYGGs~--ENR~Rf~~Eii~aIr~~vg~d~~v~ 220 (341)
T PF00724_consen 153 QAAR-RAKEAGFDGVEIHAAHGYLLSQF-LSPLTNRRTDEYGGSL--ENRARFLLEIIEAIREAVGPDFPVG 220 (341)
T ss_dssp HHHH-HHHHTT-SEEEEEESTTSHHHHH-HSTTT---SSTTSSSH--HHHHHHHHHHHHHHHHHHTGGGEEE
T ss_pred HHHH-HHHHhccCeEeecccchhhhhhe-eeeccCCCchhhhhhh--chhhHHHHHHHHHHHHHhcCCceEE
Confidence 2333 45569999999999864432210 1112222234444433 2356788888888887655444344
No 146
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=61.72 E-value=17 Score=44.14 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=50.7
Q ss_pred cEEEEEecCCcCeEEEEeecC-C-CCCC---ccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeCCCCccccCCcc
Q 004253 204 GITYREWAPGAKSASLIGDFN-N-WNPN---ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPAW 278 (765)
Q Consensus 204 gv~FrvWAP~A~~V~L~gdFN-~-w~~~---~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~~~~~~~~~~~ 278 (765)
|..+++|+|+|+.+.+.+.-. + |++. .+.|.+...|+|...|.+......+...+..|.+.+.......+..+++
T Consensus 68 G~iw~~~~p~~~~g~~y~yr~~g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 147 (697)
T COG1523 68 GAIWHLWLPGAKPGQVYGYRVHGPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPY 147 (697)
T ss_pred ccEEEEEcCCCceeeEEEEecCCCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccC
Confidence 448999999999999998442 2 4432 3567788899999999987755433333445544433222113444445
Q ss_pred ceeeccC
Q 004253 279 IKFSVQA 285 (765)
Q Consensus 279 ~~~~~~~ 285 (765)
.+.++..
T Consensus 148 ~Ksvv~~ 154 (697)
T COG1523 148 PKSVVID 154 (697)
T ss_pred CceEEec
Confidence 4444433
No 147
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=60.91 E-value=5.2 Score=47.91 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCCcceeeccccccc
Q 004253 640 KMIRLVTMGLGGEAYLNFMGNEFG 663 (765)
Q Consensus 640 k~a~lllltlpG~P~l~yyGdE~G 663 (765)
....++-+|.||+|=+ |+|.|.=
T Consensus 709 L~q~LlkltaPGVPD~-YQGtE~w 731 (889)
T COG3280 709 LAQTLLKLTAPGVPDI-YQGTELW 731 (889)
T ss_pred HHHHHHHHcCCCCCcc-ccchhhh
Confidence 3445677999999999 9999953
No 148
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=59.57 E-value=1e+02 Score=34.59 Aligned_cols=132 Identities=13% Similarity=0.084 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHH---HHHHHHHH
Q 004253 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEV---LRFLLSNA 462 (765)
Q Consensus 386 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v---~~~i~~~l 462 (765)
.+.||+|++++|++|=++++-+. |.+.........+.+.. . ...... ....+..+ --.+..++ .+.+...+
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL~--H~Gr~~~~~~~~~~~~~-~-~~ps~~-~~~~~~~p-~~mt~~eI~~ii~~f~~AA 150 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQLW--HVGAMRKLGTPPFPDVP-P-LSPSGL-VGPGKPVG-REMTEADIDDVIAAFARAA 150 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEecc--CCCCCcCcccCccCCCc-e-eCCCCC-CcCCCCCC-ccCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999874 55443211000011100 0 000000 00000000 01122222 23333344
Q ss_pred HHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcC-CCc
Q 004253 463 RWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLY-PEA 527 (765)
Q Consensus 463 ~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~-p~~ 527 (765)
+.-. +.|+||.-+-++...+-... +.+.++..-++|.|.. .....|+.++.+.+++.. |++
T Consensus 151 ~~a~-~aGfDgVeih~ahGyLl~qF-LSp~~N~RtDeYGGsl--enR~Rf~~eii~air~~vG~d~ 212 (361)
T cd04747 151 ADAR-RLGFDGIELHGAHGYLIDQF-FWAGTNRRADGYGGSL--AARSRFAAEVVKAIRAAVGPDF 212 (361)
T ss_pred HHHH-HcCCCEEEEecccchHHHHh-cCCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHcCCCC
Confidence 4444 48999999998874332211 1122222334444433 234578888888888865 454
No 149
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=58.20 E-value=16 Score=38.63 Aligned_cols=48 Identities=31% Similarity=0.422 Sum_probs=35.1
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeec
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 408 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV 408 (765)
++-|.++|+||+++|+++-=+ -.. +.++..++|+.+.++|++|+-.|=
T Consensus 87 ~~yl~~~k~lGf~~IEiSdGt----------i~l----------~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 87 DEYLEECKELGFDAIEISDGT----------IDL----------PEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHHHHHCT-SEEEE--SS----------S-------------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEecCCc----------eeC----------CHHHHHHHHHHHHHCCCEEeeccc
Confidence 467899999999999986311 110 248888999999999999998754
No 150
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=57.81 E-value=45 Score=35.46 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 004253 384 GTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNAR 463 (765)
Q Consensus 384 Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~ 463 (765)
+...++.+=|.+|++.|++||+=| +. .. .+ . |. .. -.+++-|+-+++++.
T Consensus 56 ~~~~~~~~~i~~~~~~g~KVllSi-----GG-----~~--~~---~-fs-------------~~-a~~~~~r~~f~~s~~ 105 (256)
T cd06546 56 PRFTTLWTELAILQSSGVKVMGML-----GG-----AA--PG---S-FS-------------RL-DDDDEDFERYYGQLR 105 (256)
T ss_pred chhhHHHHHHHHHHhCCCEEEEEE-----CC-----CC--CC---C-cc-------------cc-cCCHHHHHHHHHHHH
Confidence 333466666778899999999853 11 00 00 0 10 01 134555666677788
Q ss_pred HHHHHcCCcEEEecc
Q 004253 464 WWLEEYKFDGFRFDG 478 (765)
Q Consensus 464 ~W~~e~gvDGFRfD~ 478 (765)
-++++|++||+-||-
T Consensus 106 ~~~~~~~~DGiDiDw 120 (256)
T cd06546 106 DMIRRRGLDGLDLDV 120 (256)
T ss_pred HHHHHhCCCceEEee
Confidence 889899999999984
No 151
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=57.55 E-value=1.8e+02 Score=32.64 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcc--cCCCCCCCCCCHH---HHHHHHH
Q 004253 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHW--MWDSRLFNYGSWE---VLRFLLS 460 (765)
Q Consensus 386 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~--~w~~~~ln~~~~~---v~~~i~~ 460 (765)
.+.+|+|++++|++|-++++-+. |.+..... ...+.. . +....-.... .+....-..+..+ +.+-+.+
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL~--H~G~~~~~---~~~~~~-~-~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~ 154 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIELW--HGGAHAPN---RESRET-P-LGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVD 154 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEecc--cCCCCCCc---cCCCCC-c-cCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHH
Confidence 68999999999999999999876 66543211 000000 0 0000000000 0000001122233 3333344
Q ss_pred HHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCC
Q 004253 461 NARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYP 525 (765)
Q Consensus 461 ~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p 525 (765)
.++ -+.+.|+||.-+-++...+-... +.+.++..-++|.|.. .....|+.++-+.|++..+
T Consensus 155 AA~-ra~~aGfDgVEih~ahGyLl~QF-lSp~~N~RtD~yGGsl--enR~Rf~~eii~aIr~~vg 215 (370)
T cd02929 155 AAL-RARDAGFDIVYVYAAHGYLPLQF-LLPRYNKRTDEYGGSL--ENRARFWRETLEDTKDAVG 215 (370)
T ss_pred HHH-HHHHcCCCEEEEcccccchHHHh-hCccccCCccccCCCh--HhhhHHHHHHHHHHHHHcC
Confidence 444 44558999999998863221110 1111122233443333 2345788888888887654
No 152
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=56.75 E-value=77 Score=34.42 Aligned_cols=128 Identities=23% Similarity=0.317 Sum_probs=76.6
Q ss_pred hhHhhhhhHHHHcCCCEEEECCcccCC-CCCCCCCccccccCCCCCCCC---HHHHHHHHHHHhhcCCEEEEeecccccc
Q 004253 338 NFRDDVLPRIKRLGYNAVQIMAVQEHS-YYASFGYHVTNFFAPSSRCGT---PDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (765)
Q Consensus 338 ~~~~~~L~yLk~LGvt~I~L~Pi~e~~-~~~~~GY~~~~~~a~~~~~Gt---~~efk~LV~~aH~~GI~VIlDvV~NH~~ 413 (765)
+..++++..||+-|+|++- .+.- .++.--|...+- +....++ ..|.+.+|++|+++||.+|.-+|.=--.
T Consensus 77 k~~de~fk~ikdn~~Na~V----iD~Kdd~G~lty~s~d~--~~~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD~ 150 (400)
T COG1306 77 KRLDELFKLIKDNNINAFV----IDVKDDYGELTYPSSDE--INKYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFKDT 150 (400)
T ss_pred hHHHHHHHHHHhCCCCEEE----EEecCCCccEeccccch--hhhhhhccccccccHHHHHHHHhcCeEEEEEEEEeeee
Confidence 4456899999999999984 3432 223344544442 2222233 3678889999999999999999853211
Q ss_pred CCCcccCcCC------CCCCCCCcccC-----CCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecccc
Q 004253 414 NNVLDGLNMF------DGTDGHYFHSG-----SRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (765)
Q Consensus 414 ~~~~~~~~~f------~g~~~~yf~~~-----~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~ 480 (765)
.- .-.+.| +|.+..-|..+ ..+.|| .+-=++.+++|=+..++--++ +|+|-+.||-+.
T Consensus 151 ~l--~~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehW------Vd~y~~~~WeYNvtIAKEa~~-fGfdEiQFDYIR 219 (400)
T COG1306 151 IL--AKENPFKIAVYKDGKPWKAFTNGALRKESDGEHW------VDAYDKNLWEYNVTIAKEAAK-FGFDEIQFDYIR 219 (400)
T ss_pred eE--EeecCceEEEEcCCCcchhhhcccccccccceee------ecccchhhhhhhHHHHHHHHH-cCccceeeeEEE
Confidence 10 000111 11111111111 112232 334467899999999988777 999999999754
No 153
>PTZ00445 p36-lilke protein; Provisional
Probab=56.15 E-value=24 Score=36.52 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=41.4
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEE----CCcccCCCCCCCCCccccccCCCCCCCC--HHHHHHHHHHHhhcCCEEEE
Q 004253 335 TYANFRDDVLPRIKRLGYNAVQI----MAVQEHSYYASFGYHVTNFFAPSSRCGT--PDDLKSLIDKAHELGLLVLM 405 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGvt~I~L----~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt--~~efk~LV~~aH~~GI~VIl 405 (765)
+....++...+.|+++||.+|-+ .=|--|. -||+-.+ +-+..+++ ..+|+.++.++++.||+|++
T Consensus 26 ~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~Hs----gG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 26 NPHESADKFVDLLNECGIKVIASDFDLTMITKHS----GGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhc----ccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 44455556778899999999953 1111122 2444332 22334433 35699999999999999974
No 154
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=55.37 E-value=2e+02 Score=32.42 Aligned_cols=130 Identities=15% Similarity=0.123 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhhcCCEEEEeeccccc-cCCCcccCcCCCCCCCCCcccCCCCCcccCC-CCCCCCCCHHHH---HHHHH
Q 004253 386 PDDLKSLIDKAHELGLLVLMDIVHSHA-SNNVLDGLNMFDGTDGHYFHSGSRGYHWMWD-SRLFNYGSWEVL---RFLLS 460 (765)
Q Consensus 386 ~~efk~LV~~aH~~GI~VIlDvV~NH~-~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~-~~~ln~~~~~v~---~~i~~ 460 (765)
.+.||+|++++|++|-++++-+. |. +........ .+ ...+-.+.. ...... ...-..+..++. +.+.+
T Consensus 82 i~~~k~l~davh~~G~~i~~QL~--H~~Gr~~~~~~~--~~-~~~~~ps~~--~~~~~~~~~p~~mt~~eI~~ii~~f~~ 154 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQLT--AGFGRVCIPGFL--GE-DKPVAPSPI--PNRWLPEITCRELTTEEVETFVGKFGE 154 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEcc--CcCCCccCcccc--CC-CCccCCCCC--CCCcCCCCCCCcCCHHHHHHHHHHHHH
Confidence 57899999999999999998875 64 433211100 00 000000000 000000 000011222332 22333
Q ss_pred HHHHHHHHcCCcEEEecccc-cccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCC
Q 004253 461 NARWWLEEYKFDGFRFDGVT-SMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPE 526 (765)
Q Consensus 461 ~l~~W~~e~gvDGFRfD~v~-~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~ 526 (765)
.++ .+.+.|+||.-+-++. ..+-.. =+.+.++..-++|.|. -...+.|+.++-+.|++..+.
T Consensus 155 AA~-ra~~AGfDgVEih~ah~GyLl~q-FLSp~~N~RtDeyGGs--lenR~rf~~eii~~vr~~~g~ 217 (382)
T cd02931 155 SAV-IAKEAGFDGVEIHAVHEGYLLDQ-FTISLFNKRTDKYGGS--LENRLRFAIEIVEEIKARCGE 217 (382)
T ss_pred HHH-HHHHcCCCEEEEeccccChHHHH-hcCCccCCCCCcCCCC--HHHHhHHHHHHHHHHHHhcCC
Confidence 333 4445899999999875 221110 0112222333454332 233567888888888876543
No 155
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=55.08 E-value=31 Score=31.03 Aligned_cols=56 Identities=23% Similarity=0.417 Sum_probs=37.9
Q ss_pred EEEEEecCCc--CeEEEEee---cCCCCCC-ccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEee
Q 004253 205 ITYREWAPGA--KSASLIGD---FNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMD 266 (765)
Q Consensus 205 v~FrvWAP~A--~~V~L~gd---FN~w~~~-~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~ 266 (765)
++|++-++.. +.|.|+|+ ..+|++. ..+|...++.+|++.+.-.. +. ...|||.+.
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~-~~-----~veYKY~i~ 63 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPE-SV-----YIEYKYFVS 63 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECC-CC-----cEEEEEEEE
Confidence 4666665543 78899986 5679864 47898878889987775321 21 357888764
No 156
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=55.07 E-value=39 Score=30.35 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=36.6
Q ss_pred EEEEEecCC---cCeEEEEe---ecCCCCCCccCCcc---CCCceEEEEeCCCCCCCCCCCCCCEEEEEeeCC
Q 004253 205 ITYREWAPG---AKSASLIG---DFNNWNPNADIMTQ---NEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP 268 (765)
Q Consensus 205 v~FrvWAP~---A~~V~L~g---dFN~w~~~~~~m~~---~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~ 268 (765)
++|++-.+. .+.|+|+| ++.+|+....+|.. ..++.|++.+.-. .|. -..|||.+...
T Consensus 5 v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp-~~~-----~veyKyv~~~~ 71 (99)
T cd05809 5 QTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLP-AGR-----NIEFKAIKKSK 71 (99)
T ss_pred EEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEec-CCC-----cEEEEEEEEcC
Confidence 678875553 46899998 67899876433322 3468998877532 222 24677776543
No 157
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=54.51 E-value=41 Score=39.19 Aligned_cols=104 Identities=12% Similarity=0.246 Sum_probs=62.8
Q ss_pred CCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 332 IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 332 ~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
.+..|.-+. +-+..+++||+|+.-+.=-+..-. .-|.. -...-...+=.+.||++|+++||.+|+.+. |
T Consensus 66 A~D~Yhry~-eDi~l~~~lG~~~yR~si~WsRi~--P~g~~------~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~--H 134 (474)
T PRK09852 66 AIDFYHRYK-EDIALMAEMGFKVFRTSIAWSRLF--PQGDE------LTPNQQGIAFYRSVFEECKKYGIEPLVTLC--H 134 (474)
T ss_pred cCchhhhhH-HHHHHHHHcCCCeEEeeceeeeee--eCCCC------CCCCHHHHHHHHHHHHHHHHcCCEEEEEee--C
Confidence 445666666 689999999999987653221100 00100 000111245678999999999999999876 3
Q ss_pred ccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 004253 412 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (765)
Q Consensus 412 ~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~g 470 (765)
..- |.|+..... -|.++++.+++.+.++..+++||
T Consensus 135 ~~~-------------P~~l~~~~G-----------GW~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 135 FDV-------------PMHLVTEYG-----------SWRNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred CCC-------------CHHHHHhcC-----------CCCCHHHHHHHHHHHHHHHHHhc
Confidence 311 222221101 14567888888888888887775
No 158
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=53.70 E-value=26 Score=42.72 Aligned_cols=63 Identities=6% Similarity=0.056 Sum_probs=50.1
Q ss_pred CCCCCCHHhhHhhhhhHHHHcCCCEEEECCcccC---CCCCCCCCccccccCCCCCCCCHHHHHHHH
Q 004253 330 EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEH---SYYASFGYHVTNFFAPSSRCGTPDDLKSLI 393 (765)
Q Consensus 330 ~~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~---~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV 393 (765)
.-++|+|..+. +.++.+++.|.+.|+|.|+... ..+.+--|.+.+=|+.+|-|=.++.+-++.
T Consensus 158 ~~GIGDfgdl~-~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~e~l~e~~ 223 (695)
T PRK11052 158 NWGIGDFGDLK-QMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFQ 223 (695)
T ss_pred CCCeecHHHHH-HHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCHHHHhhhh
Confidence 44789999977 7999999999999999999853 122345688999899998888877776654
No 159
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=52.61 E-value=42 Score=36.79 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEecc
Q 004253 450 GSWEVLRFLLSNARWWLEEYKFDGFRFDG 478 (765)
Q Consensus 450 ~~~~v~~~i~~~l~~W~~e~gvDGFRfD~ 478 (765)
.+++.|+.+++++.-|++++++||+-+|-
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDw 133 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDW 133 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 46788898999999999999999999994
No 160
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=52.25 E-value=41 Score=36.90 Aligned_cols=94 Identities=22% Similarity=0.284 Sum_probs=44.9
Q ss_pred HHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 004253 391 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (765)
Q Consensus 391 ~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~g 470 (765)
..|++||++|++|+==+.+.+-.... +-...+.+. .. +.-.+.+.|+ ..++.||
T Consensus 46 ~widaAHrnGV~vLGTiife~~~~~~-~~~~ll~~~--------~~-------------g~~~~A~kLi----~ia~~yG 99 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGGGAE-WCEELLEKD--------ED-------------GSFPYADKLI----EIAKYYG 99 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--HH-HHHHHT-----------TT-------------S--HHHHHHH----HHHHHHT
T ss_pred hhHHHHHhcCceEEEEEEecCCchHH-HHHHHHcCC--------cc-------------cccHHHHHHH----HHHHHcC
Confidence 57999999999998776663221100 000001111 00 1112233344 4455699
Q ss_pred CcEEEecccccccccccCccccccCCCCcccCccCCh-hHHHHHHHHHHHHhhcCCCceEE
Q 004253 471 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDV-DAVVYLMLVNDMIHGLYPEAVSI 530 (765)
Q Consensus 471 vDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~-~a~~~l~~~~~~v~~~~p~~i~i 530 (765)
+||+=+--=..+. ..... .-+.|++.+++.+++ .|+..++
T Consensus 100 FDGw~iN~E~~~~-------------------~~~~~~~l~~F~~~l~~~~~~-~~~~~v~ 140 (311)
T PF03644_consen 100 FDGWLINIETPLS-------------------GPEDAENLIDFLKYLRKEAHE-NPGSEVI 140 (311)
T ss_dssp --EEEEEEEESST-------------------TGGGHHHHHHHHHHHHHHHHH-T-T-EEE
T ss_pred CCceEEEecccCC-------------------chhHHHHHHHHHHHHHHHhhc-CCCcEEE
Confidence 9998776422210 00122 234899999999999 7776544
No 161
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=52.04 E-value=60 Score=32.62 Aligned_cols=63 Identities=22% Similarity=0.230 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhc--CCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 004253 386 PDDLKSLIDKAHEL--GLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNAR 463 (765)
Q Consensus 386 ~~efk~LV~~aH~~--GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~ 463 (765)
.+.....+.++|++ |++|++=+--.. + ...+ --..++..|+.+++++.
T Consensus 48 ~~~~~~~i~~l~~~~~g~kv~~sigg~~-------------~--~~~~---------------~~~~~~~~~~~f~~~~~ 97 (210)
T cd00598 48 EEPLKGALEELASKKPGLKVLISIGGWT-------------D--SSPF---------------TLASDPASRAAFANSLV 97 (210)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEEcCCC-------------C--CCCc---------------hhhcCHHHHHHHHHHHH
Confidence 35566778888887 999998752100 0 0000 11356778888888999
Q ss_pred HHHHHcCCcEEEecc
Q 004253 464 WWLEEYKFDGFRFDG 478 (765)
Q Consensus 464 ~W~~e~gvDGFRfD~ 478 (765)
-+++++++||+-+|-
T Consensus 98 ~~v~~~~~DGidiD~ 112 (210)
T cd00598 98 SFLKTYGFDGVDIDW 112 (210)
T ss_pred HHHHHcCCCceEEee
Confidence 999999999999995
No 162
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=51.17 E-value=20 Score=33.33 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=29.1
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEE
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIl 405 (765)
.+.++.+.++|+.+||+.|= .+-+++++.|+++||+|+-
T Consensus 69 ~~~v~~~~~~g~~~v~~~~g--------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 69 PEIVDEAAALGVKAVWLQPG--------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHT-SEEEE-TT--------------------------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHcCCCEEEEEcc--------------------------hHHHHHHHHHHHcCCEEEe
Confidence 36899999999999999874 3456889999999999984
No 163
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=51.13 E-value=2e+02 Score=31.76 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcC-CCCCCCCCcccCCCCCcccCCCCCCCCCCHH---HHHHHHHH
Q 004253 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNM-FDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE---VLRFLLSN 461 (765)
Q Consensus 386 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~-f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~---v~~~i~~~ 461 (765)
.+.||+|++++|++|-++++-+- |.+......... ..+........ .....+..+ -..+..+ +.+.+.++
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql~--h~G~~~~~~~~~~~~~ps~~~~~~---~~~~~~~~p-~~mt~~eI~~~i~~~~~a 154 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQLN--HPGRQSPAGLNQNPVAPSVALDPG---GLGKLFGKP-RAMTEEEIEDVIDRFAHA 154 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcc--CCCcCCCccCCCCCcCCCCCcCcc---cccccCCCC-CcCCHHHHHHHHHHHHHH
Confidence 68999999999999999998865 555432111000 00000000000 000000000 0111222 33333444
Q ss_pred HHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCC
Q 004253 462 ARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYP 525 (765)
Q Consensus 462 l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p 525 (765)
++. +.+.|+||.-+-++...+-... +.+.++..-++|.|. -.....|..++-+.|++.-+
T Consensus 155 A~r-a~~aGfDgVeih~a~gyLl~qF-lsp~~N~R~D~yGGs--lenR~rf~~EiI~aIR~avG 214 (338)
T cd04733 155 ARL-AQEAGFDGVQIHAAHGYLLSQF-LSPLTNKRTDEYGGS--LENRARLLLEIYDAIRAAVG 214 (338)
T ss_pred HHH-HHHcCCCEEEEchhhhhHHHHh-cCCcCCCCCccCCCC--HHHHHHHHHHHHHHHHHHcC
Confidence 554 5569999999998753221100 111222223455443 23456777888888877654
No 164
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=50.48 E-value=1.9e+02 Score=32.12 Aligned_cols=128 Identities=12% Similarity=0.091 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHH---HHHHHHHH
Q 004253 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEV---LRFLLSNA 462 (765)
Q Consensus 386 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v---~~~i~~~l 462 (765)
.+.+|+|++++|++|-++++-+ +|.+.... ....+. +.+-.+.-. ........-..+..++ .+.+..++
T Consensus 76 i~~~~~l~~~vh~~g~~~~~Ql--~H~G~~~~---~~~~~~-~~~~ps~~~--~~~~~~~~~~mt~~eI~~ii~~f~~AA 147 (343)
T cd04734 76 IPGFRRLAEAVHAHGAVIMIQL--THLGRRGD---GDGSWL-PPLAPSAVP--EPRHRAVPKAMEEEDIEEIIAAFADAA 147 (343)
T ss_pred HHHHHHHHHHHHhcCCeEEEec--cCCCcCcC---cccCCC-cccCCCCCC--CCCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999865 45544321 000110 001000000 0000000011222233 33333444
Q ss_pred HHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCC
Q 004253 463 RWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYP 525 (765)
Q Consensus 463 ~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p 525 (765)
+. +.+.|+||.-+-++...+-... +.+.++..-++|.|.. .....|+.++-+.+++.-+
T Consensus 148 ~r-a~~aGfDgVeih~ahGyLl~qF-lsp~~N~RtD~yGGsl--enR~r~~~eiv~~ir~~vg 206 (343)
T cd04734 148 RR-CQAGGLDGVELQAAHGHLIDQF-LSPLTNRRTDEYGGSL--ENRMRFLLEVLAAVRAAVG 206 (343)
T ss_pred HH-HHHcCCCEEEEccccchHHHHh-hCCCcCCCCCcCCCCH--HHHhHHHHHHHHHHHHHcC
Confidence 43 3458999999998743211000 1122222233443322 2345788888888877653
No 165
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=48.48 E-value=35 Score=38.94 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=30.3
Q ss_pred CCCCCCC-----CHHHHHHHHHHHHHHHHHcCCcEEEecccccc
Q 004253 444 SRLFNYG-----SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 482 (765)
Q Consensus 444 ~~~ln~~-----~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m 482 (765)
+-.|.|+ +|.++++|.+..+.-.. -++|||+|.+++-
T Consensus 363 cVKLRYG~~peDsP~LW~~M~~Yt~~~A~--iF~G~RiDNCHST 404 (423)
T PF14701_consen 363 CVKLRYGSKPEDSPFLWKHMKEYTELMAK--IFHGFRIDNCHST 404 (423)
T ss_pred eeeecCCCCCCCCHHHHHHHHHHHHHHHH--hcCeeeeecCCCC
Confidence 3457774 68999999999997777 8999999998653
No 166
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=48.32 E-value=72 Score=38.18 Aligned_cols=101 Identities=20% Similarity=0.202 Sum_probs=61.3
Q ss_pred hhhhhHHHHcCCCEEEECCccc-CCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccCCCccc
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQE-HSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDG 419 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e-~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~ 419 (765)
++.|..+|++|+|+|+--=.+. |.. +-| .-.|...-||.+||+.||+.|+.|||-+=+--+++-
T Consensus 52 ~~~i~k~k~~Gln~IqtYVfWn~Hep--~~g---------~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw---- 116 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYVFWNLHEP--SPG---------KYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEW---- 116 (649)
T ss_pred HHHHHHHHhcCCceeeeeeecccccC--CCC---------cccccchhHHHHHHHHHHHCCeEEEecCCCeEEecc----
Confidence 4689999999999998643221 110 001 114667789999999999999999998765444332
Q ss_pred CcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 004253 420 LNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLE 467 (765)
Q Consensus 420 ~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~ 467 (765)
.+-|-+ |+...-.+ -.|...|+....++.......+.
T Consensus 117 --~~GG~P--~wL~~~pg-------~~~Rt~nepfk~~~~~~~~~iv~ 153 (649)
T KOG0496|consen 117 --NFGGLP--WWLRNVPG-------IVFRTDNEPFKAEMERWTTKIVP 153 (649)
T ss_pred --cCCCcc--hhhhhCCc-------eEEecCChHHHHHHHHHHHHHHH
Confidence 222222 22211111 23555667666666666665554
No 167
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=46.42 E-value=43 Score=36.63 Aligned_cols=29 Identities=14% Similarity=0.050 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEecc
Q 004253 450 GSWEVLRFLLSNARWWLEEYKFDGFRFDG 478 (765)
Q Consensus 450 ~~~~v~~~i~~~l~~W~~e~gvDGFRfD~ 478 (765)
.+++.|+-+++++.-++++||+||+-+|.
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~ 116 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEV 116 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEec
Confidence 56888999999999999999999999983
No 168
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=46.02 E-value=56 Score=35.71 Aligned_cols=29 Identities=21% Similarity=0.341 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEecc
Q 004253 450 GSWEVLRFLLSNARWWLEEYKFDGFRFDG 478 (765)
Q Consensus 450 ~~~~v~~~i~~~l~~W~~e~gvDGFRfD~ 478 (765)
.+++.|+.+++++.-|+++|++||+-+|-
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDw 115 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDW 115 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECC
Confidence 45788898999999999999999999994
No 169
>PLN02411 12-oxophytodienoate reductase
Probab=45.98 E-value=2.3e+02 Score=32.13 Aligned_cols=132 Identities=15% Similarity=0.161 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCC----------CCcccCCCCCcccCCCCCCCCCCHHHH
Q 004253 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDG----------HYFHSGSRGYHWMWDSRLFNYGSWEVL 455 (765)
Q Consensus 386 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~----------~yf~~~~~g~~~~w~~~~ln~~~~~v~ 455 (765)
.+.+|+|++++|++|-++++-+. |.+......... .+..+ .|......+.. ......--.+..++.
T Consensus 86 i~~~~~l~~avH~~G~~i~~QL~--H~Gr~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~pr~mt~~eI~ 161 (391)
T PLN02411 86 VEAWKKVVDAVHAKGSIIFCQLW--HVGRASHQVYQP-GGAAPISSTNKPISERWRILMPDGSY-GKYPKPRALETSEIP 161 (391)
T ss_pred HHHHHHHHHHHHhcCCEEEEecc--CCCCCCcccccc-CCCCccCCccccccCCcccccCCccc-cCCCCCccCCHHHHH
Confidence 57899999999999999999876 555432110000 00000 00000000000 000000112223333
Q ss_pred H---HHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCC
Q 004253 456 R---FLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYP 525 (765)
Q Consensus 456 ~---~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p 525 (765)
+ .+.+.++.=. +-|+||.-+-++...+-... +.+.++..-++|.|.. ...+.|+.++-+.|++..+
T Consensus 162 ~ii~~f~~AA~rA~-~AGFDGVEIH~AhGYLl~QF-LSp~tN~RtDeYGGSl--ENR~RF~lEIi~aVr~~vg 230 (391)
T PLN02411 162 EVVEHYRQAALNAI-RAGFDGIEIHGAHGYLIDQF-LKDGINDRTDEYGGSI--ENRCRFLMQVVQAVVSAIG 230 (391)
T ss_pred HHHHHHHHHHHHHH-HcCCCEEEEccccchHHHHh-CCCccCCCCCcCCCCH--HHHhHHHHHHHHHHHHHcC
Confidence 3 3333444444 48999999999865432211 1122223334554433 2356788888888887654
No 170
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=45.77 E-value=1.2e+02 Score=32.96 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCC-CCCCCCH---HHHHHHHHH
Q 004253 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSR-LFNYGSW---EVLRFLLSN 461 (765)
Q Consensus 386 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~-~ln~~~~---~v~~~i~~~ 461 (765)
.+.+|++++++|+.|-++++-+ +|.+....... .+.. .+-.+. ....+... .-..+.. ++.+.+.+.
T Consensus 76 ~~~~~~~~~~vh~~g~~~~~Ql--~h~G~~~~~~~---~~~~-~~~~s~---~~~~~~~~~~~~mt~~ei~~~i~~~~~a 146 (327)
T cd02803 76 IPGLRKLTEAVHAHGAKIFAQL--AHAGRQAQPNL---TGGP-PPAPSA---IPSPGGGEPPREMTKEEIEQIIEDFAAA 146 (327)
T ss_pred HHHHHHHHHHHHhCCCHhhHHh--hCCCcCCCCcC---CCCC-ccCCCC---CCCCCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 6899999999999999998776 56554321111 1100 000000 00000000 0011222 344445556
Q ss_pred HHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcC
Q 004253 462 ARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLY 524 (765)
Q Consensus 462 l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~ 524 (765)
++...+ .|+||+-+.++...+-... +.+.++..-++|.|.. .....|+.++-+.+++..
T Consensus 147 A~~a~~-aGfDgveih~~~gyL~~qF-lsp~~n~R~d~yGgs~--enr~r~~~eii~avr~~~ 205 (327)
T cd02803 147 ARRAKE-AGFDGVEIHGAHGYLLSQF-LSPYTNKRTDEYGGSL--ENRARFLLEIVAAVREAV 205 (327)
T ss_pred HHHHHH-cCCCEEEEcchhhhHHHHh-cCccccCCCcccCCCH--HHHHHHHHHHHHHHHHHc
Confidence 666655 8999999998743221100 0111112223333322 234567777777777654
No 171
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=45.69 E-value=3.9e+02 Score=29.41 Aligned_cols=67 Identities=18% Similarity=0.088 Sum_probs=38.9
Q ss_pred hhhhhHHHH---cCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccC
Q 004253 341 DDVLPRIKR---LGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (765)
Q Consensus 341 ~~~L~yLk~---LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~ 414 (765)
++.+.|.++ -|+--|..-.+.-++....+-+.+.-+. . .-.+.||+|++++|+.|-++++-+. |.+.
T Consensus 33 ~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~---d--~~~~~~~~l~~~vh~~G~~~~~QL~--H~G~ 102 (336)
T cd02932 33 DWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWN---D--EQIEALKRIVDFIHSQGAKIGIQLA--HAGR 102 (336)
T ss_pred HHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecC---H--HHHHHHHHHHHHHHhcCCcEEEEcc--CCCc
Confidence 345555544 5677775554444333111112221110 0 1368999999999999999998876 4544
No 172
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=45.35 E-value=54 Score=29.01 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=36.9
Q ss_pred EEEEEecCCc---CeEEEEee---cCCCCCCccCCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEee
Q 004253 205 ITYREWAPGA---KSASLIGD---FNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMD 266 (765)
Q Consensus 205 v~FrvWAP~A---~~V~L~gd---FN~w~~~~~~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~ 266 (765)
++|++-+|+. +.++|+|+ ..+|+. ..+|...+.+.|++.+.-. .+. ...|||.+.
T Consensus 3 v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~-~~~l~~~~~~~W~~~v~lp-~~~-----~ieYky~~~ 63 (95)
T cd05813 3 VTFRVHYITHSDAQLVAVTGDHEELGSWHS-YIPLQYVKDGFWSASVSLP-VDT-----HVEWKFVLV 63 (95)
T ss_pred EEEEEEeeeCCCCeEEEEEcChHHHCCCCc-cccCcCCCCCCEEEEEEec-CCC-----cEEEEEEEE
Confidence 6788877753 45678874 467986 6899887888997766422 122 247777653
No 173
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=45.09 E-value=84 Score=27.47 Aligned_cols=59 Identities=19% Similarity=0.388 Sum_probs=37.7
Q ss_pred EEEEEec--CCcCeEEEEeec---CCCCC-CccCCccCC-CceEEEEeCCCC-CCCCCCCCCCEEEEEeeCC
Q 004253 205 ITYREWA--PGAKSASLIGDF---NNWNP-NADIMTQNE-FGVWEIFLPNNA-DGSPPIPHGSRVKIHMDTP 268 (765)
Q Consensus 205 v~FrvWA--P~A~~V~L~gdF---N~w~~-~~~~m~~~~-~GvW~i~lp~~~-~G~~~~~~g~~y~~~~~~~ 268 (765)
++|++-+ .--+.|.|+|+. .+|++ .+.+|...+ .+.|++.++-.. .+. -..|||.+...
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~-----~~~yKy~~~~~ 68 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQ-----VIEYKYVIVDD 68 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCC-----eEEEEEEEECC
Confidence 4565554 345688999865 57886 457898777 899998776322 121 23677776543
No 174
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=44.96 E-value=48 Score=36.78 Aligned_cols=63 Identities=24% Similarity=0.263 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChh-HHHHHHHHHHHHhhcCCCce
Q 004253 450 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGLYPEAV 528 (765)
Q Consensus 450 ~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-a~~~l~~~~~~v~~~~p~~i 528 (765)
.++..|+.+++++.-|+++|++||+-+|-- .. +.. .+...+.+ -+.|++++++.+++..++.+
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE-~p------------~~~---~~~~~d~~~~~~ll~~lr~~l~~~~~~~~ 155 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDWE-YP------------GQR---GGPPEDKENFVTLLKELREAFEPEAPRLL 155 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeeee-cc------------ccC---CCCHHHHHHHHHHHHHHHHHHHhhCcCeE
Confidence 457888889999999999999999999942 11 000 01111222 23778888888876544433
No 175
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=44.67 E-value=38 Score=39.57 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=46.1
Q ss_pred HhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCC-EEEEeecccc
Q 004253 340 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGL-LVLMDIVHSH 411 (765)
Q Consensus 340 ~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI-~VIlDvV~NH 411 (765)
.+++|..|+++|++.|.|.| +... ..-+-.+ .|-.|.+++.+.++.|++.|+ .|-+|+.+..
T Consensus 268 t~e~L~~Lk~~Gv~RISIGv-QS~~--------d~vLk~i-gR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GL 330 (488)
T PRK08207 268 TEEKLEVLKKYGVDRISINP-QTMN--------DETLKAI-GRHHTVEDIIEKFHLAREMGFDNINMDLIIGL 330 (488)
T ss_pred CHHHHHHHHhcCCCeEEEcC-CcCC--------HHHHHHh-CCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCC
Confidence 35799999999999998655 2211 1111223 455689999999999999999 7889998754
No 176
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=44.30 E-value=36 Score=40.02 Aligned_cols=58 Identities=14% Similarity=-0.032 Sum_probs=46.2
Q ss_pred CCCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHH
Q 004253 331 PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDD 388 (765)
Q Consensus 331 ~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~e 388 (765)
-++|+|...+...++.+++.|....||+|+.......+--|++.+=|+.++-|=+++.
T Consensus 29 ~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~~~~~ssPYs~~S~~a~NplyI~le~ 86 (513)
T TIGR00217 29 WGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPADFTRSPPYSISSARALNVYYIDLEA 86 (513)
T ss_pred CCccChHHHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCCCcCchhcccccHHhcChhh
Confidence 5789999998778899999999999999999865544445888888888876655443
No 177
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=43.29 E-value=72 Score=36.81 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=44.5
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCC-EEEEeeccccc
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGL-LVLMDIVHSHA 412 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI-~VIlDvV~NH~ 412 (765)
++.|..|+++|++.|.|. |.... ..-.-.+ .+-.+.++..+.|+.+++.|| .|-+|+.++..
T Consensus 151 ~e~l~~l~~aG~~risiG-vqS~~--------~~~L~~l-~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlP 213 (453)
T PRK09249 151 LEMLDALRELGFNRLSLG-VQDFD--------PEVQKAV-NRIQPFEFTFALVEAARELGFTSINIDLIYGLP 213 (453)
T ss_pred HHHHHHHHHcCCCEEEEC-CCCCC--------HHHHHHh-CCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 579999999999999764 22211 1111122 344688999999999999999 89999987654
No 178
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=42.94 E-value=59 Score=35.34 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChh-HHHHHHHHHHHHhhc
Q 004253 451 SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGL 523 (765)
Q Consensus 451 ~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-a~~~l~~~~~~v~~~ 523 (765)
+++-|+-+++++.-|+++||+||+-||--..... +...+.+ -..|+++++..+++.
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~-----------------~~~~~~~~~~~~l~~L~~~l~~~ 152 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSS-----------------GDPQDKDNYTAFLKELRKALKRA 152 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTST-----------------SSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeecccc-----------------ccchhhhhhhhhhhhhhhhhccc
Confidence 4677889999999999999999999985321100 0001222 237888888888775
No 179
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=42.09 E-value=49 Score=36.89 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=46.0
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCE-EEEeecccccc
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHAS 413 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~-VIlDvV~NH~~ 413 (765)
++.|..|+++|||.|.|-. +.. ++.-+-.+ .+-.+.++..+.|+.+++.|+. |-+|+.+...+
T Consensus 100 ~e~l~~l~~~Gv~risiGv-qS~--------~~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg 163 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGV-QSF--------RDDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPL 163 (360)
T ss_pred HHHHHHHHHcCCCEEEEec-ccC--------ChHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCC
Confidence 4689999999999997642 221 11122233 5667899999999999999995 78999886543
No 180
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=41.27 E-value=44 Score=35.41 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=35.3
Q ss_pred hhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEE
Q 004253 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (765)
Q Consensus 342 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIl 405 (765)
+.++.++++|+++|+|.+...+. ...+.++ +.++++++.+.+.+.||.|..
T Consensus 20 e~~~~~~~~G~~~iEl~~~~~~~-----~~~~~~~--------~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 20 ERLVFAKELGFDFVEMSVDESDE-----RLARLDW--------SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHcCCCeEEEecCCccc-----ccccccC--------CHHHHHHHHHHHHHcCCCceE
Confidence 68999999999999996431110 0011111 357788999999999998863
No 181
>PLN02316 synthase/transferase
Probab=40.92 E-value=3.5e+02 Score=34.77 Aligned_cols=32 Identities=9% Similarity=0.128 Sum_probs=24.2
Q ss_pred CCCCCHHhhHhhhhhHHHHcCCCEEEECCccc
Q 004253 331 PIINTYANFRDDVLPRIKRLGYNAVQIMAVQE 362 (765)
Q Consensus 331 ~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e 362 (765)
.+.|....+....-..|+++|.+.--++|-+.
T Consensus 601 aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~ 632 (1036)
T PLN02316 601 AKVGGLGDVVTSLSRAVQDLNHNVDIILPKYD 632 (1036)
T ss_pred CCcCcHHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 35677777774455578999999989999775
No 182
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=40.65 E-value=58 Score=35.37 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEecc
Q 004253 450 GSWEVLRFLLSNARWWLEEYKFDGFRFDG 478 (765)
Q Consensus 450 ~~~~v~~~i~~~l~~W~~e~gvDGFRfD~ 478 (765)
.++..|+.+++++.-++++||+||+-+|-
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDW 116 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDW 116 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeecc
Confidence 56888999999999999999999999993
No 183
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=39.22 E-value=54 Score=35.57 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChh-HHHHHHHHHHHHhhc
Q 004253 449 YGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGL 523 (765)
Q Consensus 449 ~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-a~~~l~~~~~~v~~~ 523 (765)
..++..|+.+++++..+++++|+||+-+|-- .+. ..+.+ -..|++++++.+++.
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E-~~~--------------------~~d~~~~~~fl~eL~~~l~~~ 137 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFE-ELP--------------------ADDLPKYVAFLSELRRRLPAQ 137 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecC-CCC--------------------hhHHHHHHHHHHHHHHHhhhc
Confidence 3678889989999999999999999999962 110 01122 237888898888765
No 184
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=38.15 E-value=3.6e+02 Score=30.33 Aligned_cols=131 Identities=18% Similarity=0.204 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcC-CCCCCCC-CcccCCCCCcccCCCCCCCCCCHH---HHHHHHH
Q 004253 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNM-FDGTDGH-YFHSGSRGYHWMWDSRLFNYGSWE---VLRFLLS 460 (765)
Q Consensus 386 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~-f~g~~~~-yf~~~~~g~~~~w~~~~ln~~~~~---v~~~i~~ 460 (765)
.+.||++++++|++|=++++-+. |.+......... ..-..+. ...... ....+ =-.+..+ +.+.+..
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL~--H~Gr~~~~~~~~~~~~vapS~~~~~~~-----~~~~p-r~mt~~eI~~ii~~f~~ 153 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQLW--HAGRKARASHPWLPSAVAPSAIPAPGG-----RRATP-RELTEEEIEEVIEDFAR 153 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEec--cCcccccccccCCCcccCCCccccccC-----CCCCC-ccCCHHHHHHHHHHHHH
Confidence 67899999999999999999865 565321100000 0000010 000000 00000 0011222 2223333
Q ss_pred HHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCce
Q 004253 461 NARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAV 528 (765)
Q Consensus 461 ~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i 528 (765)
..+. ..+-|+||.-+-++...+-... +.+..+..-++|.|..+ ..+.|+.++-+.|++.-+.-+
T Consensus 154 AA~r-A~~AGFDgVEIH~AhGYLi~qF-lsp~tN~RtD~YGGSlE--NR~Rf~~EVv~aVr~~vg~~~ 217 (363)
T COG1902 154 AARR-AKEAGFDGVEIHGAHGYLLSQF-LSPLTNKRTDEYGGSLE--NRARFLLEVVDAVREAVGADF 217 (363)
T ss_pred HHHH-HHHcCCCEEEEeeccchHHHHh-cCCccCCCCCccCCcHH--HHHHHHHHHHHHHHHHhCCCc
Confidence 3333 3458999999999985432211 11222223345544433 355788888888877654433
No 185
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.91 E-value=4.3e+02 Score=29.41 Aligned_cols=130 Identities=14% Similarity=0.086 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCH---HHHHHHHHHH
Q 004253 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSW---EVLRFLLSNA 462 (765)
Q Consensus 386 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~---~v~~~i~~~l 462 (765)
.+.+|+|++++|++|-++++-+ +|.+........ .+. ..+-.+... .........--.+.. ++.+.+..++
T Consensus 77 i~~~~~l~~~vh~~G~~i~~QL--~h~G~~~~~~~~--~~~-~~~~ps~~~-~~~~~~~~p~~mt~~eI~~ii~~f~~aA 150 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAILQI--FHAGRMANPALV--PGG-DVVSPSAIA-AFRPGAHTPRELTHEEIEDIIDAFGEAT 150 (353)
T ss_pred hHHHHHHHHHHHhCCCeEEEEe--cCCCCCCCcccc--CCC-ceecCCCCc-ccCCCCCCCccCCHHHHHHHHHHHHHHH
Confidence 6899999999999999998665 455543211100 010 000000000 000000000011222 3334444455
Q ss_pred HHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCC
Q 004253 463 RWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYP 525 (765)
Q Consensus 463 ~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p 525 (765)
+.- .+.|+||.-+-++...+-.... .+.++..-++|.|.. .....|+.++-+.+++.-+
T Consensus 151 ~~a-~~aGfDgVeih~ahGyLl~qFl-sp~~N~R~D~yGGsl--enR~r~~~eii~~vr~~vg 209 (353)
T cd04735 151 RRA-IEAGFDGVEIHGANGYLIQQFF-SPHSNRRTDEWGGSL--ENRMRFPLAVVKAVQEVID 209 (353)
T ss_pred HHH-HHcCCCEEEEccccchHHHHhc-CCccCCCCcccCCcH--HHHHHHHHHHHHHHHHHhc
Confidence 554 4589999999987543222111 112222234444432 3456788888888877643
No 186
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=37.38 E-value=5.3e+02 Score=27.85 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=35.7
Q ss_pred hHHHHcCCCEEEECCcccCCCCCCCCCccccccCCC--CCCCCHHHHHHHHHHHhhcCCEEEEe
Q 004253 345 PRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS--SRCGTPDDLKSLIDKAHELGLLVLMD 406 (765)
Q Consensus 345 ~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~--~~~Gt~~efk~LV~~aH~~GI~VIlD 406 (765)
.|..+-.|+.|-|.=+..++. -|+-..||-... ..++.=.+|.+-|+.|+++|++|||=
T Consensus 18 ~~C~~~~~dii~i~Fl~~~~~---~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLS 78 (280)
T cd02877 18 EYCDTGNYDIVNISFLNVFGS---GGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLS 78 (280)
T ss_pred HHhCCCCccEEEEEeEcccCC---CCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEE
Confidence 455566688887765554443 122223322211 11113368999999999999999995
No 187
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=36.94 E-value=30 Score=39.06 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHhhcCCEEEEeeccccc
Q 004253 385 TPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (765)
Q Consensus 385 t~~efk~LV~~aH~~GI~VIlDvV~NH~ 412 (765)
++++|..|++=|.+++|.||.|=+|.-+
T Consensus 244 ~~e~L~~ll~Fa~~kniHvI~DEIya~s 271 (471)
T KOG0256|consen 244 SPEELISLLNFASRKNIHVISDEIYAGS 271 (471)
T ss_pred CHHHHHHHHHHHhhcceEEEeehhhccc
Confidence 4899999999999999999999998655
No 188
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=36.93 E-value=53 Score=37.64 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=44.5
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEE-EeeccccccC
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL-MDIVHSHASN 414 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VI-lDvV~NH~~~ 414 (765)
++.|..|+++|+|.|.|- |+... ..-...+. |--+.++..+.|+.|++.||.+| +|+.++.-+.
T Consensus 141 ~e~l~~l~~~G~~rvslG-vQS~~--------~~~L~~l~-R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~q 205 (430)
T PRK08208 141 AEKLALLAARGVNRLSIG-VQSFH--------DSELHALH-RPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQ 205 (430)
T ss_pred HHHHHHHHHcCCCEEEEe-cccCC--------HHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 578999999999999763 22221 11111222 22378899999999999999865 9998876554
No 189
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=36.56 E-value=48 Score=36.37 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=43.4
Q ss_pred hhhhhHHHHcCCC-EEEECCcccCCCCCCCCCccccc-cCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccc
Q 004253 341 DDVLPRIKRLGYN-AVQIMAVQEHSYYASFGYHVTNF-FAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (765)
Q Consensus 341 ~~~L~yLk~LGvt-~I~L~Pi~e~~~~~~~GY~~~~~-~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~N 410 (765)
++.|..|+++|++ .|.|-. |+.. ..-. ..++..+ |.+++.+.++.+|++||.|.+++.+.
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~--ES~~-------d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGL--ETAN-------DRIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred HHHHHHHHHcCCCEEEEEec--CcCC-------HHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 4789999999998 576543 1111 1112 1344444 88999999999999999999999875
No 190
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=36.49 E-value=39 Score=37.90 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=46.4
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCE-EEEeeccccccC
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 414 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~-VIlDvV~NH~~~ 414 (765)
+++|..|+++|+|.|.|- |+.... .-. ..-.+-.+.++..+.++.+++.|+. |.+|++++.-+.
T Consensus 108 ~e~l~~l~~~G~~rvslG-vQS~~~--------~~L-~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgq 172 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLG-MQSAAP--------HVL-AVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGE 172 (375)
T ss_pred HHHHHHHHHcCCCEEEEe-cccCCH--------HHH-HHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCC
Confidence 478999999999999764 332211 111 1123456789999999999999999 999999876543
No 191
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=36.29 E-value=1.6e+02 Score=34.08 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHhhcCCEEEEeec-cccccC
Q 004253 385 TPDDLKSLIDKAHELGLLVLMDIV-HSHASN 414 (765)
Q Consensus 385 t~~efk~LV~~aH~~GI~VIlDvV-~NH~~~ 414 (765)
|++|.+++|+-|.-|||+||-.+- +.|++.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 789999999999999999999984 889876
No 192
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=36.08 E-value=88 Score=32.38 Aligned_cols=59 Identities=14% Similarity=0.297 Sum_probs=40.9
Q ss_pred hhhhHHHHcCCCEEEECCcccCCCC--CCCC--CccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEE
Q 004253 342 DVLPRIKRLGYNAVQIMAVQEHSYY--ASFG--YHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (765)
Q Consensus 342 ~~L~yLk~LGvt~I~L~Pi~e~~~~--~~~G--Y~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIl 405 (765)
+....|+++|+..|+|+|.+..... ...| |...+. .-=+.++++++.+.+.++|+.|++
T Consensus 149 ~ia~~l~~l~~~~~~llpyh~~g~~Ky~~lg~~y~~~~~-----~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 149 QALDVLIPLGIKQIHLLPFHQYGEPKYRLLGKTWSMKEV-----PAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHcCCceEEEecCCccchhHHHHcCCcCccCCC-----CCcCHHHHHHHHHHHHHcCCeEEe
Confidence 5678889999999999998865321 1111 222221 112578999999999999999974
No 193
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=35.73 E-value=57 Score=30.22 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=40.8
Q ss_pred cEEeCCcEEEEEecC--CcCeEEEE-eecCCC----CCCccCCcc----CCCceEEEEeCCCCCCCCCCCCCCEEEEEee
Q 004253 198 FIRSDTGITYREWAP--GAKSASLI-GDFNNW----NPNADIMTQ----NEFGVWEIFLPNNADGSPPIPHGSRVKIHMD 266 (765)
Q Consensus 198 ~~~~~~gv~FrvWAP--~A~~V~L~-gdFN~w----~~~~~~m~~----~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~ 266 (765)
.-+.++.+++|+++. .+++|.|+ +|-.+| .....+|++ .....|++.|+.... ..+|.|.+.
T Consensus 16 y~~~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~-------r~~Y~F~l~ 88 (120)
T PF02903_consen 16 YPYDGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEK-------RLRYYFELE 88 (120)
T ss_dssp EEECTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTS-------EEEEEEEEE
T ss_pred EecCCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCC-------eEEEEEEEE
Confidence 344567788888875 68899997 555544 223456765 346799999986432 247788877
Q ss_pred C
Q 004253 267 T 267 (765)
Q Consensus 267 ~ 267 (765)
+
T Consensus 89 ~ 89 (120)
T PF02903_consen 89 D 89 (120)
T ss_dssp E
T ss_pred e
Confidence 6
No 194
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=35.55 E-value=1.1e+02 Score=35.64 Aligned_cols=103 Identities=11% Similarity=0.213 Sum_probs=61.0
Q ss_pred CCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccc
Q 004253 333 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (765)
Q Consensus 333 ~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~ 412 (765)
+..|--.. +-|..+|+||+|+--++=-+.--. .-|... ...-...+=.++||++|.++||..|+.+. |.
T Consensus 65 ~D~Yhry~-EDI~Lm~elG~~~yRfSIsWsRI~--P~G~~~------~~N~~gl~~Y~~lid~l~~~GI~P~vTL~--H~ 133 (477)
T PRK15014 65 VDFYGHYK-EDIKLFAEMGFKCFRTSIAWTRIF--PKGDEA------QPNEEGLKFYDDMFDELLKYNIEPVITLS--HF 133 (477)
T ss_pred cCcccccH-HHHHHHHHcCCCEEEecccceeec--cCCCCC------CCCHHHHHHHHHHHHHHHHcCCEEEEEee--CC
Confidence 34555555 689999999999976542111000 001000 00111245678999999999999999976 32
Q ss_pred cCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 004253 413 SNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (765)
Q Consensus 413 ~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~g 470 (765)
.- |.++..... -+.|+++.+++.+.++..+++||
T Consensus 134 dl-------------P~~L~~~yG-----------GW~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 134 EM-------------PLHLVQQYG-----------SWTNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred CC-------------CHHHHHhcC-----------CCCChHHHHHHHHHHHHHHHHhc
Confidence 11 222221101 14567888888888888888776
No 195
>PRK15447 putative protease; Provisional
Probab=35.51 E-value=74 Score=34.67 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=37.8
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEe
Q 004253 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMD 406 (765)
Q Consensus 334 Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlD 406 (765)
|++..| ...|++.|+++|+|--- .++.- ..| +.+++++.|+.||++|.+|.+=
T Consensus 15 ~~~~~~----~~~~~~~gaDaVY~g~~-~~~~R--------------~~f-~~~~l~e~v~~~~~~gkkvyva 67 (301)
T PRK15447 15 ETVRDF----YQRAADSPVDIVYLGET-VCSKR--------------REL-KVGDWLELAERLAAAGKEVVLS 67 (301)
T ss_pred CCHHHH----HHHHHcCCCCEEEECCc-cCCCc--------------cCC-CHHHHHHHHHHHHHcCCEEEEE
Confidence 555544 45688999999999721 11110 012 6799999999999999999883
No 196
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=35.47 E-value=79 Score=32.48 Aligned_cols=43 Identities=12% Similarity=0.315 Sum_probs=30.0
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEE
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 403 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~V 403 (765)
+.-+..|+++|.+.|-.+|+-- .-..+||+.+.++|-++||.+
T Consensus 138 etAiaml~dmG~~SiKffPm~G--------------------l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 138 ETAIAMLKDMGGSSIKFFPMGG--------------------LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHTT--EEEE---TT--------------------TTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHcCCCeeeEeecCC--------------------cccHHHHHHHHHHHHHcCcee
Confidence 3678899999999999988741 124699999999999999876
No 197
>PRK01060 endonuclease IV; Provisional
Probab=35.46 E-value=74 Score=33.72 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=35.7
Q ss_pred hhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEE
Q 004253 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 403 (765)
Q Consensus 342 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~V 403 (765)
+.|+.++++|+++|+|.+--.+. + .+..-++++++++-+.+.+.||++
T Consensus 16 ~~l~~~~~~G~d~vEl~~~~p~~------~--------~~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 16 GAVAEAAEIGANAFMIFTGNPQQ------W--------KRKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHcCCCEEEEECCCCCC------C--------cCCCCCHHHHHHHHHHHHHcCCCC
Confidence 68999999999999996532211 1 111237888999999999999985
No 198
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=35.44 E-value=39 Score=29.78 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=22.8
Q ss_pred CcCeEEEEeecCCCCCC-ccCCccCC----CceEEEEeC
Q 004253 213 GAKSASLIGDFNNWNPN-ADIMTQNE----FGVWEIFLP 246 (765)
Q Consensus 213 ~A~~V~L~gdFN~w~~~-~~~m~~~~----~GvW~i~lp 246 (765)
+|.+|.|.+-||+|... ...|.+.. .|.|+++|.
T Consensus 17 g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~ 55 (87)
T PF03423_consen 17 GAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVD 55 (87)
T ss_dssp -S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE
T ss_pred CCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEE
Confidence 58899999889999765 46677655 799999983
No 199
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=35.15 E-value=4.6e+02 Score=29.07 Aligned_cols=158 Identities=13% Similarity=0.064 Sum_probs=74.1
Q ss_pred HHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCC
Q 004253 347 IKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGT 426 (765)
Q Consensus 347 Lk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~ 426 (765)
..+-|+.-|..-.+.-++......+++.- + +. .-...+|+|++++|++|-++++-+. |.+.... ..+.
T Consensus 46 rA~gG~GlIi~~~~~v~~~~~~~~~~~~~-~--~d--~~i~~~r~l~d~vh~~G~~i~~QL~--H~G~~~~-----~~~~ 113 (337)
T PRK13523 46 RAAGQVGLVIVEATAVLPEGRISDKDLGI-W--DD--EHIEGLHKLVTFIHDHGAKAAIQLA--HAGRKAE-----LEGD 113 (337)
T ss_pred HHcCCCeEEEECCeEECccccCCCCceec-C--CH--HHHHHHHHHHHHHHhcCCEEEEEcc--CCCCCCC-----CCCC
Confidence 34567877766555444331111111110 0 00 1268999999999999999998875 5544321 0110
Q ss_pred CCCCcccCCCCCcccCCCCCCCCCCHHHH---HHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCc
Q 004253 427 DGHYFHSGSRGYHWMWDSRLFNYGSWEVL---RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF 503 (765)
Q Consensus 427 ~~~yf~~~~~g~~~~w~~~~ln~~~~~v~---~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~ 503 (765)
. ...... .........-..+..++. +.+...++.-. +.|+||.-+-++...+-... +.+.++..-++|.|.
T Consensus 114 --~-~~ps~~-~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~-~aGfDgVeih~ahGyLl~qF-lSp~~N~RtD~yGGs 187 (337)
T PRK13523 114 --I-VAPSAI-PFDEKSKTPVEMTKEQIKETVLAFKQAAVRAK-EAGFDVIEIHGAHGYLINEF-LSPLSNKRTDEYGGS 187 (337)
T ss_pred --c-cCCCCC-CCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEccccchHHHHh-cCCccCCcCCCCCCC
Confidence 0 000000 000000000011222332 23333444444 48999999998853321110 111122223344443
Q ss_pred cCChhHHHHHHHHHHHHhhcC
Q 004253 504 ATDVDAVVYLMLVNDMIHGLY 524 (765)
Q Consensus 504 ~~d~~a~~~l~~~~~~v~~~~ 524 (765)
-...+.|+.++.+.+++..
T Consensus 188 --lenR~Rf~~eii~~ir~~~ 206 (337)
T PRK13523 188 --PENRYRFLREIIDAVKEVW 206 (337)
T ss_pred --HHHHHHHHHHHHHHHHHhc
Confidence 2335678888888887754
No 200
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=34.76 E-value=73 Score=33.63 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=33.8
Q ss_pred hhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEE
Q 004253 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL 404 (765)
Q Consensus 342 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VI 404 (765)
+.|+.++++||++|+|..-. +..| .++ .+..++++|-+.+.+.||+|.
T Consensus 17 ~~l~~~~~~G~~~vEl~~~~-----------~~~~-~~~---~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 17 HAFRDASELGYDGIEIWGGR-----------PHAF-APD---LKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred HHHHHHHHcCCCEEEEccCC-----------cccc-ccc---cCchHHHHHHHHHHHcCCeEE
Confidence 68999999999999984211 1111 111 134678889899999999974
No 201
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=34.14 E-value=35 Score=37.03 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHhhcCCEEEEee
Q 004253 385 TPDDLKSLIDKAHELGLLVLMDI 407 (765)
Q Consensus 385 t~~efk~LV~~aH~~GI~VIlDv 407 (765)
++++++++.+-||++||.|.||-
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDG 165 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDG 165 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEE
T ss_pred CHHHHHHHHHHHHhCceEEEEeh
Confidence 47999999999999999999994
No 202
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=34.14 E-value=87 Score=33.56 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=43.7
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
++.+..||++|++.|.+. +|. ++.-|-.+.+. .+.++..+.++.||+.||.|...+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~--~E~--------~~~~~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN--LDT--------SQEFYSNIIST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEc--ccC--------CHHHHhhccCC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 468999999999999886 331 11122233333 4789999999999999999988877654
No 203
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=33.67 E-value=1e+02 Score=36.34 Aligned_cols=61 Identities=20% Similarity=0.246 Sum_probs=43.8
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
++.|..|+++|+|.|+|-. +.... .+ .-.+ .|--|.++..+.++.+++.|++|.+|+.++-
T Consensus 206 ~e~L~~L~~~G~~rVslGV-QS~~d------~V--L~~i-nRght~~~v~~Ai~~lr~~G~~v~~~LM~GL 266 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGV-QTIYN------DI--LERT-KRGHTVRDVVEATRLLRDAGLKVVYHIMPGL 266 (522)
T ss_pred HHHHHHHHHcCCCEEEEEC-ccCCH------HH--HHHh-CCCCCHHHHHHHHHHHHHcCCeEEEEeecCC
Confidence 4799999999999998753 22110 01 1112 2334789999999999999999999998753
No 204
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=33.03 E-value=4.3e+02 Score=32.28 Aligned_cols=127 Identities=13% Similarity=0.036 Sum_probs=74.1
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHH-HHHHHHHHh-hcCCEEEEeeccccccCCCcc
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDD-LKSLIDKAH-ELGLLVLMDIVHSHASNNVLD 418 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~e-fk~LV~~aH-~~GI~VIlDvV~NH~~~~~~~ 418 (765)
+..|++|+++|+|+|+|-.+.+..+++. +...|=|+..+=-.+| |-+..=.++ +.|++|..-+..--..-..
T Consensus 337 ~~l~~ri~~~~~~~VyLqafadp~gdg~----~~~lYFpnr~lPmraDlfnrvawql~tR~~v~vyAWmpvl~~~l~~-- 410 (672)
T PRK14581 337 DKLVQRISDLRVTHVFLQAFSDPKGDGN----IRQVYFPNRWIPMRQDLFNRVVWQLASRPDVEVYAWMPVLAFDMDP-- 410 (672)
T ss_pred HHHHHHHHhcCCCEEEEEeeeCCCCCCc----eeeEEecCCcccHHHhhhhHHHHHHHhhhCceEEEeeehhhccCCc--
Confidence 3689999999999999999987655432 1222334444444444 445535555 5599998877643221100
Q ss_pred cCcCCCCCCCCCcccCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEecc
Q 004253 419 GLNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 478 (765)
Q Consensus 419 ~~~~f~g~~~~yf~~~~-~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGFRfD~ 478 (765)
.. .....+.... ......-+.+.+.-=+|++|+.|.+.-.-...--.|||+=|.-
T Consensus 411 ~~-----~~~~~~~~~~~~~~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~GilfhD 466 (672)
T PRK14581 411 SL-----PRITRIDPKTGKTSIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDGIIYHD 466 (672)
T ss_pred cc-----chhhhcccccCccccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 00 0000110000 0000000124566678999999999999999844899988854
No 205
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=33.01 E-value=2.3e+02 Score=31.24 Aligned_cols=103 Identities=14% Similarity=0.122 Sum_probs=61.8
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCcccCCC-CCCCCCccccccCCCCCCCCHHHHHHHHHHHhhc--CCEEEEeecccc
Q 004253 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSY-YASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHEL--GLLVLMDIVHSH 411 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~-~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~--GI~VIlDvV~NH 411 (765)
+...+. +.+..+.++||++|-|-||-++-. .++-.|++.+ -+.+-|+++++. .|.||.||-+..
T Consensus 59 sid~l~-~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~~~g------------~v~~air~iK~~~pdl~vi~DVcLc~ 125 (322)
T PRK13384 59 PESALA-DEIERLYALGIRYVMPFGISHHKDAKGSDTWDDNG------------LLARMVRTIKAAVPEMMVIPDICFCE 125 (322)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEeCCCCCCCCCcccccCCCC------------hHHHHHHHHHHHCCCeEEEeeeeccc
Confidence 455666 588999999999999999954311 1223333322 133444444444 899999998765
Q ss_pred ccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEE
Q 004253 412 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGF 474 (765)
Q Consensus 412 ~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGF 474 (765)
-.....+|+-. + + .-.|.+..+.|.....-..+ -|.|-.
T Consensus 126 YT~hGHcGil~-~------------g----------~i~ND~Tl~~L~~~Als~A~-AGADiV 164 (322)
T PRK13384 126 YTDHGHCGVLH-N------------D----------EVDNDATVENLVKQSVTAAK-AGADML 164 (322)
T ss_pred CCCCCceeecc-C------------C----------cCccHHHHHHHHHHHHHHHH-cCCCeE
Confidence 43321122110 0 0 13467788888888777777 677643
No 206
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=32.68 E-value=47 Score=37.08 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=44.9
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCE-EEEeeccccc
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHA 412 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~-VIlDvV~NH~ 412 (765)
++.|..|+++|+|.|.| +|+.... .-.-. -.|-.+.++..+.|+.|++.|+. |-+|+.++.-
T Consensus 103 ~e~l~~lk~~G~nrisi-GvQS~~d--------~vL~~-l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlP 165 (353)
T PRK05904 103 QSQINLLKKNKVNRISL-GVQSMNN--------NILKQ-LNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLP 165 (353)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCCH--------HHHHH-cCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCC
Confidence 47899999999999865 3443221 11111 13446789999999999999997 8899998654
No 207
>PRK07094 biotin synthase; Provisional
Probab=32.45 E-value=74 Score=34.72 Aligned_cols=62 Identities=11% Similarity=0.007 Sum_probs=44.7
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccc
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~ 412 (765)
++.+..|++.|++.|.+. + |. .++.-|-.+.+ -.+.++..+.++.||+.||.|-.++++.+-
T Consensus 129 ~e~l~~Lk~aG~~~v~~g-l-Es-------~~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlp 190 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLR-H-ET-------ADKELYAKLHP-GMSFENRIACLKDLKELGYEVGSGFMVGLP 190 (323)
T ss_pred HHHHHHHHHcCCCEEEec-c-cc-------CCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecceEEEECC
Confidence 468899999999999742 2 21 11222333444 357899999999999999999888887653
No 208
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=31.92 E-value=87 Score=34.83 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=45.6
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCE-EEEeecccccc
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHAS 413 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~-VIlDvV~NH~~ 413 (765)
+++|..|+++|||.|.| .|+.+.. .-.-.+ .|-.+.++..+.|+.+++.|+. |-+|+.++-.+
T Consensus 98 ~e~l~~l~~~GvnRiSi-GvQS~~~--------~~L~~l-gR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISF-GVQSFNE--------DKLKFL-GRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL 161 (350)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCCH--------HHHHHc-CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 47899999999999974 3443321 111122 4556789999999999999996 66999986543
No 209
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=31.35 E-value=1.8e+02 Score=34.03 Aligned_cols=104 Identities=13% Similarity=0.274 Sum_probs=61.6
Q ss_pred CCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 332 IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 332 ~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
.+..|--.. +-|..+|+||+|+--++=-+.--. .-|... .+ .-...+=.++||++|+++||..|+-+. |
T Consensus 68 a~d~Yhry~-eDi~Lm~~lG~~aYRfSIsWsRI~--P~G~~~----~~--N~~gl~~Y~~lId~L~~~GI~P~VTL~--H 136 (478)
T PRK09593 68 AIDMYHHYK-EDIALFAEMGFKTYRMSIAWTRIF--PKGDEL----EP--NEAGLQFYEDIFKECHKYGIEPLVTIT--H 136 (478)
T ss_pred ccchHHhhH-HHHHHHHHcCCCEEEEecchhhcc--cCCCCC----CC--CHHHHHHHHHHHHHHHHcCCEEEEEec--c
Confidence 445666666 689999999999976642211000 001000 00 111235567999999999999998766 4
Q ss_pred ccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 004253 412 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (765)
Q Consensus 412 ~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~g 470 (765)
.. -|.++..... -+.|+++.+.+.+.++.-+++||
T Consensus 137 ~d-------------lP~~L~~~~G-----------GW~n~~~v~~F~~YA~~~~~~fg 171 (478)
T PRK09593 137 FD-------------CPMHLIEEYG-----------GWRNRKMVGFYERLCRTLFTRYK 171 (478)
T ss_pred cC-------------CCHHHHhhcC-----------CCCChHHHHHHHHHHHHHHHHhc
Confidence 31 1233321111 24567777888888777777765
No 210
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=30.48 E-value=19 Score=37.52 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=38.6
Q ss_pred hhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccc
Q 004253 343 VLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (765)
Q Consensus 343 ~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~N 410 (765)
-.....++|.++|-++.-+..-..+.|.| ..+++++++++||+.||.||+..++.
T Consensus 81 ~ve~A~~~GAd~vd~vi~~~~~~~~~~~~-------------~~~~i~~v~~~~~~~gl~vIlE~~l~ 135 (236)
T PF01791_consen 81 EVEEAIRLGADEVDVVINYGALGSGNEDE-------------VIEEIAAVVEECHKYGLKVILEPYLR 135 (236)
T ss_dssp HHHHHHHTT-SEEEEEEEHHHHHTTHHHH-------------HHHHHHHHHHHHHTSEEEEEEEECEC
T ss_pred HHHHHHHcCCceeeeeccccccccccHHH-------------HHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 57778999999998876542211111111 24899999999999999999996554
No 211
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=30.26 E-value=64 Score=36.16 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=44.4
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCE-EEEeecccccc
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHAS 413 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~-VIlDvV~NH~~ 413 (765)
++.|..|+++|+|.|.|. |+... ..-+-.+ .+-.+.++..+.|+.+++.|+. |-+|+.+..-+
T Consensus 100 ~e~l~~l~~~G~~rvsiG-vqS~~--------~~~l~~l-~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPg 163 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLG-VQTFN--------DELLKKI-GRTHNEEDVYEAIANAKKAGFDNISIDLIYALPG 163 (377)
T ss_pred HHHHHHHHHcCCCEEEEe-cccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCC
Confidence 468999999999998764 22221 1111122 3456789999999999999997 67898876543
No 212
>PRK05660 HemN family oxidoreductase; Provisional
Probab=30.17 E-value=90 Score=35.12 Aligned_cols=64 Identities=25% Similarity=0.311 Sum_probs=45.5
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEE-EEeeccccccC
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV-LMDIVHSHASN 414 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~V-IlDvV~NH~~~ 414 (765)
.++|..|+++|||.|.|-. +.+ ++.-+-.+ .+..+.++..+-|+.|++.|+.. -+|+.+...+.
T Consensus 107 ~e~l~~Lk~~Gv~risiGv-qS~--------~~~~L~~l-~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgq 171 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGV-QSF--------SEEKLKRL-GRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQ 171 (378)
T ss_pred HHHHHHHHHcCCCEEEecc-CcC--------CHHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 3689999999999997642 211 11222223 35568899999999999999975 59998876543
No 213
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=29.87 E-value=2.3e+02 Score=32.03 Aligned_cols=119 Identities=10% Similarity=0.064 Sum_probs=55.2
Q ss_pred HHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCC-CHHHHHHHHHHHHHHHH
Q 004253 389 LKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYG-SWEVLRFLLSNARWWLE 467 (765)
Q Consensus 389 fk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~-~~~v~~~i~~~l~~W~~ 467 (765)
=+.|+++|+++|+..++=++ ..+|.|+...............|.-. -...-.||.++++++ +
T Consensus 106 QrwfL~~Ak~rGV~~f~aFS----------------NSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~-~ 168 (384)
T PF14587_consen 106 QRWFLKAAKERGVNIFEAFS----------------NSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHY-K 168 (384)
T ss_dssp HHHHHHHHHHTT---EEEE-----------------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHcCCCeEEEee----------------cCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHH-H
Confidence 34588999999999866221 12233333222211111111112111 235678999999998 5
Q ss_pred HcCCcEEEecccccccccccCccccccCCCCcccCc-cCChhHHHHHHHHHHHHhhcCCCc-eEEeec
Q 004253 468 EYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF-ATDVDAVVYLMLVNDMIHGLYPEA-VSIGED 533 (765)
Q Consensus 468 e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~-~~d~~a~~~l~~~~~~v~~~~p~~-i~iaE~ 533 (765)
+ .|+.|+.+.-+=.. .+....+.+-|. ....+...+++.+...+++..... |+++|.
T Consensus 169 ~---~GI~f~~IsP~NEP------~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 169 K---WGINFDYISPFNEP------QWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp C---TT--EEEEE--S-T------TS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred h---cCCccceeCCcCCC------CCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 4 46788888765222 111111111121 233444588999999998877554 667776
No 214
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=29.52 E-value=8e+02 Score=27.08 Aligned_cols=104 Identities=14% Similarity=0.068 Sum_probs=62.7
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCcccCC---CC-CCCCCccccccCCCCCCCCHHHHHHHHHHHhh--cCCEEEEeec
Q 004253 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHS---YY-ASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHE--LGLLVLMDIV 408 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~---~~-~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~--~GI~VIlDvV 408 (765)
+...+. +.+..+.++|+++|-|-|+-+.. .. ++-.|++.+. +.+.|+++++ -.|-||-||-
T Consensus 49 s~d~l~-~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~------------v~~air~iK~~~pdl~vi~Dvc 115 (320)
T cd04824 49 GVNRLE-EFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGP------------VIQAIKLIREEFPELLIACDVC 115 (320)
T ss_pred CHHHHH-HHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCCh------------HHHHHHHHHHhCCCcEEEEeee
Confidence 556666 58899999999999999996332 11 3333444332 3344444444 3899999998
Q ss_pred cccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEE
Q 004253 409 HSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGF 474 (765)
Q Consensus 409 ~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGF 474 (765)
+-.-.....+|+-.-+ + .-.|.+..+.|.....-..+ -|.|-.
T Consensus 116 lc~YT~hGHcGil~~~------------g----------~vdND~Tl~~L~k~Avs~A~-AGADiV 158 (320)
T cd04824 116 LCEYTSHGHCGILYED------------G----------TINNEASVKRLAEVALAYAK-AGAHIV 158 (320)
T ss_pred ccCCCCCCcceeECCC------------C----------cCcCHHHHHHHHHHHHHHHH-hCCCEE
Confidence 7654332112211000 0 13467788888888777777 677643
No 215
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=29.36 E-value=7.2e+02 Score=27.55 Aligned_cols=130 Identities=13% Similarity=0.092 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHH---HHHHHHHH
Q 004253 385 TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE---VLRFLLSN 461 (765)
Q Consensus 385 t~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~---v~~~i~~~ 461 (765)
-.+.+|+|++++|+.|-++++-+. |.+...... ..-+. ...- ...+....-..+..+ +.+.+...
T Consensus 75 ~i~~~~~l~~~vh~~g~~~~~QL~--h~G~~~~~~--~~~~p-s~~~-------~~~~~~~p~~mt~~eI~~i~~~f~~a 142 (353)
T cd02930 75 QAAGHRLITDAVHAEGGKIALQIL--HAGRYAYHP--LCVAP-SAIR-------APINPFTPRELSEEEIEQTIEDFARC 142 (353)
T ss_pred HHHHHHHHHHHHHHcCCEEEeecc--CCCCCCCCC--CCcCC-CCCC-------CCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 378999999999999999999876 555432100 00000 0000 000000001122233 33344444
Q ss_pred HHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEE
Q 004253 462 ARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSI 530 (765)
Q Consensus 462 l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~i 530 (765)
++. +.+.|+||+-+-++...+-... +.+.++..-++|.|. -...+.|+.++-+.+++..+.-+.|
T Consensus 143 A~~-a~~aGfDgVeih~ahGyLl~qF-lsp~~N~RtD~yGGs--lenR~r~~~eiv~aIR~~vG~d~~v 207 (353)
T cd02930 143 AAL-AREAGYDGVEIMGSEGYLINQF-LAPRTNKRTDEWGGS--FENRMRFPVEIVRAVRAAVGEDFII 207 (353)
T ss_pred HHH-HHHcCCCEEEEecccchHHHHh-cCCccCCCcCccCCC--HHHHhHHHHHHHHHHHHHcCCCceE
Confidence 554 4458999999966542211100 011122223344333 2334567777777777765433333
No 216
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=29.30 E-value=71 Score=35.71 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=44.8
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCE-EEEeecccccc
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHAS 413 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~-VIlDvV~NH~~ 413 (765)
++.|..|+++|+|.|.|-- +... ..-.-.+ .+-.+.++..+-|+.+++.|+. |-+|+.+...+
T Consensus 99 ~e~l~~l~~~G~~rvsiGv-qS~~--------d~~L~~l-~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPg 162 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGL-QAWQ--------NSLLKYL-GRIHTFEEFLENYKLARKLGFNNINVDLMFGLPN 162 (374)
T ss_pred HHHHHHHHHcCCCEEEEEC-ccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Confidence 4789999999999987643 3221 1111122 3555789999999999999997 77999876543
No 217
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=29.17 E-value=1.7e+02 Score=30.72 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCEEEEeeccccc
Q 004253 382 RCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (765)
Q Consensus 382 ~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~ 412 (765)
.+-|.+++.+|++++-.-++++++|+-+-+.
T Consensus 154 ~~~~~~~~~~ll~~v~~~~v~l~~D~~h~~~ 184 (258)
T PRK09997 154 HLTGTRQALKLIDDVGCCNLKIQYDIYHMQR 184 (258)
T ss_pred ccCCHHHHHHHHHHhCCCCEEEEeEHHHhhh
Confidence 3457888888998887778999999764443
No 218
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=29.14 E-value=61 Score=36.44 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHhhcCCEEEEeeccccccCC
Q 004253 385 TPDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (765)
Q Consensus 385 t~~efk~LV~~aH~~GI~VIlDvV~NH~~~~ 415 (765)
|.+-||++.+.||+.||-||-|=||.|+.-+
T Consensus 217 s~~HL~kiae~A~klgi~vIaDEVY~~~vfg 247 (447)
T KOG0259|consen 217 SEDHLKKIAETAKKLGIMVIADEVYGHTVFG 247 (447)
T ss_pred cHHHHHHHHHHHHHhCCeEEehhhcceeecC
Confidence 5688999999999999999999999999543
No 219
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=28.75 E-value=71 Score=36.91 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=45.5
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCE-EEEeecccccc
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHAS 413 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~-VIlDvV~NH~~ 413 (765)
++.|..|+++|+|.|.|-. +.+ ++.-.-.+ .+-.+.++..+.|+.|++.|+. |-+|+.+..-+
T Consensus 152 ~e~l~~L~~~G~~rvsiGv-QS~--------~~~vl~~l-~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPg 215 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV-QDF--------DPQVQKAI-NRIQPEEMVARAVELLRAAGFESINFDLIYGLPH 215 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-CCC--------CHHHHHHh-CCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCC
Confidence 4799999999999997643 221 11111122 3456889999999999999996 88999886543
No 220
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=28.64 E-value=90 Score=33.17 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=35.5
Q ss_pred hhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEE
Q 004253 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL 404 (765)
Q Consensus 342 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VI 404 (765)
+.|+.++++||++|+|.+- +.. -+..+.+ -+++++++|.+.+.++||+|.
T Consensus 20 e~l~~~~~~G~~~VEl~~~-~~~----~~~~~~~--------~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 20 ERLQLAKTCGFDFVEMSVD-ETD----DRLSRLD--------WSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred HHHHHHHHcCCCEEEEecC-Ccc----chhhccC--------CCHHHHHHHHHHHHHcCCCce
Confidence 6899999999999999432 111 0111111 157889999999999999985
No 221
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=27.16 E-value=5.8e+02 Score=27.62 Aligned_cols=58 Identities=10% Similarity=0.141 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHH
Q 004253 387 DDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWL 466 (765)
Q Consensus 387 ~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~ 466 (765)
+.++++|+.|+++|+.|..-+.+...+. +++. .. .+++++.++-..
T Consensus 120 ~~~~~~v~~ak~~g~~v~~~i~~~~~~~--------~~~~-----------------------~~---~~~~~~~~~~~~ 165 (287)
T PRK05692 120 ERFEPVAEAAKQAGVRVRGYVSCVLGCP--------YEGE-----------------------VP---PEAVADVAERLF 165 (287)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEEecCC--------CCCC-----------------------CC---HHHHHHHHHHHH
Confidence 4588899999999998876665432111 0110 01 257888888877
Q ss_pred HHcCCcEEEe-ccc
Q 004253 467 EEYKFDGFRF-DGV 479 (765)
Q Consensus 467 ~e~gvDGFRf-D~v 479 (765)
+ .|+|.+++ |.+
T Consensus 166 ~-~G~d~i~l~DT~ 178 (287)
T PRK05692 166 A-LGCYEISLGDTI 178 (287)
T ss_pred H-cCCcEEEecccc
Confidence 6 89998887 444
No 222
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=26.94 E-value=8.5e+02 Score=26.94 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCC--CCC----cc--cCCCCCCCCCCHH---H
Q 004253 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGS--RGY----HW--MWDSRLFNYGSWE---V 454 (765)
Q Consensus 386 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~--~g~----~~--~w~~~~ln~~~~~---v 454 (765)
...||+|++++|++|-++++-+. |.+........ ..+.. .+-.+.. ... .. .+.. .-..+..+ +
T Consensus 76 i~~lr~la~~vh~~ga~~~~QL~--H~G~~~~~~~~-~~~~~-~~~ps~~~~~~~~~~~~~~~~~~~-p~~mt~~eI~~i 150 (338)
T cd02933 76 VEGWKKVTDAVHAKGGKIFLQLW--HVGRVSHPSLL-PGGAP-PVAPSAIAAEGKVFTPAGKVPYPT-PRALTTEEIPGI 150 (338)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcc--cCccCCCcccc-cCCCC-ccCCCCCCCCcccccccccCCCCC-CCCCCHHHHHHH
Confidence 57899999999999999999765 66543211000 00000 0000000 000 00 0000 00112222 3
Q ss_pred HHHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcC
Q 004253 455 LRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLY 524 (765)
Q Consensus 455 ~~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~ 524 (765)
.+.+.++++.-. +.|+||.-+-++...+-... +.+.++..-++|.|.. ...+.|+.++-+.+++.-
T Consensus 151 i~~f~~aA~~a~-~aGfDgVeih~ahGyLl~qF-lSp~~N~R~D~yGGsl--enR~rf~~eii~air~~v 216 (338)
T cd02933 151 VADFRQAARNAI-EAGFDGVEIHGANGYLIDQF-LRDGSNKRTDEYGGSI--ENRARFLLEVVDAVAEAI 216 (338)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEccccchhHHHh-cCCccCCCCCcCCCcH--HHhhhHHHHHHHHHHHHh
Confidence 333334444444 48999999998753321110 1122223334444432 234578888888887754
No 223
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=26.88 E-value=78 Score=36.53 Aligned_cols=63 Identities=19% Similarity=0.315 Sum_probs=44.1
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCE-EEEeecccccc
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHAS 413 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~-VIlDvV~NH~~ 413 (765)
++.|..|+++|++.|.|-. ... +..-.-.+ .+-.+.++..+.|+.+++.|+. |-+|+.+...+
T Consensus 151 ~e~l~~lk~~G~~risiGv-qS~--------~~~~l~~l-~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg 214 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGV-QDF--------NKEVQQAV-NRIQPEEMIFELMNHAREAGFTSINIDLIYGLPK 214 (455)
T ss_pred HHHHHHHHHcCCCEEEEcC-CCC--------CHHHHHHh-CCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCC
Confidence 4789999999999997642 211 11111122 2346789999999999999996 77998876543
No 224
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=26.66 E-value=80 Score=31.57 Aligned_cols=50 Identities=8% Similarity=-0.008 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCC---------------------eEEEEEcC----------CCEEEEEEecCCccccc
Q 004253 708 RGMQEFDRAMQHLEEKYGFMTSEH---------------------QYVSRKDQ----------GDRGGMMTDLIPSWYMR 756 (765)
Q Consensus 708 ~~l~~f~r~Li~lRk~~~~L~~~~---------------------~~i~~~~~----------~~~vlvf~r~sp~~~~~ 756 (765)
....+++++|++||+.+|+++-+. ..++..+. -+.|+|+.|-+|..+-+
T Consensus 41 ~~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~~~~t~ 120 (168)
T PF11852_consen 41 AAASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATPEEQTF 120 (168)
T ss_dssp HHHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SSS-EEE
T ss_pred HHHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCCCeEEE
Confidence 356889999999999999873222 22334441 25699999999987654
Q ss_pred c
Q 004253 757 Q 757 (765)
Q Consensus 757 ~ 757 (765)
.
T Consensus 121 ~ 121 (168)
T PF11852_consen 121 T 121 (168)
T ss_dssp E
T ss_pred E
Confidence 3
No 225
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=26.25 E-value=2.1e+02 Score=33.43 Aligned_cols=100 Identities=12% Similarity=0.242 Sum_probs=60.4
Q ss_pred CCCCHHhhHhhhhhHHHHcCCCEEEECC----cccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEee
Q 004253 332 IINTYANFRDDVLPRIKRLGYNAVQIMA----VQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDI 407 (765)
Q Consensus 332 ~~Gt~~~~~~~~L~yLk~LGvt~I~L~P----i~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDv 407 (765)
.+..|.... +-|..+|+||+|+--++= |++. |... . ..-...+=.++||++|.++||..|+=+
T Consensus 62 a~D~Yhry~-eDi~Lm~~lG~~~yRfSIsWsRI~P~------G~~~----~--~N~~gl~~Y~~lid~L~~~GI~P~VTL 128 (476)
T PRK09589 62 AIDFYHRYK-EDIALFAEMGFKCFRTSIAWTRIFPQ------GDEL----E--PNEEGLQFYDDLFDECLKQGIEPVVTL 128 (476)
T ss_pred cccHHHhhH-HHHHHHHHcCCCEEEeccchhhcCcC------CCCC----C--CCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 445666666 689999999999976542 2211 1100 0 011124556799999999999999876
Q ss_pred ccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 004253 408 VHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (765)
Q Consensus 408 V~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~g 470 (765)
. |..- |.++..... -+.|+++.+.+.+.++.-+++||
T Consensus 129 ~--H~dl-------------P~~L~~~yG-----------GW~n~~~i~~F~~YA~~~f~~fg 165 (476)
T PRK09589 129 S--HFEM-------------PYHLVTEYG-----------GWRNRKLIDFFVRFAEVVFTRYK 165 (476)
T ss_pred c--CCCC-------------CHHHHHhcC-----------CcCChHHHHHHHHHHHHHHHHhc
Confidence 4 4311 222221101 14467777778777777777665
No 226
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=26.24 E-value=56 Score=37.27 Aligned_cols=37 Identities=32% Similarity=0.443 Sum_probs=31.9
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecc
Q 004253 373 VTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (765)
Q Consensus 373 ~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~ 409 (765)
...+-.++...|+..+++++++.||++|+.|++|-+.
T Consensus 165 lvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq 201 (405)
T COG0520 165 LVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQ 201 (405)
T ss_pred EEEEECccccccccchHHHHHHHHHHcCCEEEEECcc
Confidence 3445567788999999999999999999999999873
No 227
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=26.09 E-value=8.3e+02 Score=30.29 Aligned_cols=134 Identities=16% Similarity=0.192 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhc-CCEEEEeeccccccCCCcccCcCCCCCC-----CCCcccCCCCCcccCCCC-CCCCCCH---HHH
Q 004253 386 PDDLKSLIDKAHEL-GLLVLMDIVHSHASNNVLDGLNMFDGTD-----GHYFHSGSRGYHWMWDSR-LFNYGSW---EVL 455 (765)
Q Consensus 386 ~~efk~LV~~aH~~-GI~VIlDvV~NH~~~~~~~~~~~f~g~~-----~~yf~~~~~g~~~~w~~~-~ln~~~~---~v~ 455 (765)
.+.+|++++++|++ |-++++-+ +|.+....... .+.+.. ..|....+......-... .-..+.. ++.
T Consensus 474 i~~~~~~~~~vh~~gg~~i~~QL--~h~Gr~~~~~~-~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i 550 (765)
T PRK08255 474 EAAWKRIVDFVHANSDAKIGIQL--GHSGRKGSTRL-GWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMTRADMDRVR 550 (765)
T ss_pred HHHHHHHHHHHHhcCCceEEEEc--cCCcccccccc-cccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHH
Confidence 67899999999999 68988886 66665431110 000000 000000000000000000 0011122 233
Q ss_pred HHHHHHHHHHHHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCC
Q 004253 456 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPE 526 (765)
Q Consensus 456 ~~i~~~l~~W~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~ 526 (765)
+.+.++++.-. +.|+||+-+-++...+-... +.+..+..-++|.|.. ...+.|+.++-+.|++..++
T Consensus 551 ~~f~~aA~~a~-~aGfDgveih~ahGyLl~qF-lsp~~N~RtD~yGGsl--enR~r~~~eiv~~ir~~~~~ 617 (765)
T PRK08255 551 DDFVAAARRAA-EAGFDWLELHCAHGYLLSSF-ISPLTNQRTDEYGGSL--ENRLRYPLEVFRAVRAVWPA 617 (765)
T ss_pred HHHHHHHHHHH-HcCCCEEEEecccchHHHHh-cCCCCCCCCCCCCCCH--HHHhHHHHHHHHHHHHhcCC
Confidence 44445555444 58999999998853321110 0111122233443322 23467888888888887543
No 228
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=25.95 E-value=2.6e+02 Score=25.18 Aligned_cols=59 Identities=12% Similarity=0.208 Sum_probs=37.8
Q ss_pred EEEEEecC----CcCeEEEEee---cCCCCCCc---c-CCccCCCceEEEEeCCCCCCCCCCCCCCEEEEEeeCCC
Q 004253 205 ITYREWAP----GAKSASLIGD---FNNWNPNA---D-IMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS 269 (765)
Q Consensus 205 v~FrvWAP----~A~~V~L~gd---FN~w~~~~---~-~m~~~~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~~ 269 (765)
++|+|=.. --+.|+|+|+ +.+|+... . +|.......|++.++-. .|. --.|||.+...+
T Consensus 5 v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp-~~~-----~veyK~v~~~~~ 74 (103)
T cd05820 5 VIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVP-AGT-----YIEFKFLKAPAD 74 (103)
T ss_pred EEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcC-CCC-----cEEEEEEEECCC
Confidence 67887643 2368899984 56898642 2 67666678999888632 222 247787765433
No 229
>PRK06256 biotin synthase; Validated
Probab=25.64 E-value=1e+02 Score=33.87 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=43.7
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
++.+..||++|++.|.+. .|. . ..-|-.+.+. .+.++..+.|+.||+.||.|...+++.+
T Consensus 152 ~e~l~~LkeaG~~~v~~~--lEt-s-------~~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHN--LET-S-------RSYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHHHhCCCEEecC--Ccc-C-------HHHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 468999999999999773 232 1 1222234433 3789999999999999999988887754
No 230
>PRK04302 triosephosphate isomerase; Provisional
Probab=25.52 E-value=1.2e+02 Score=31.33 Aligned_cols=45 Identities=22% Similarity=0.328 Sum_probs=33.1
Q ss_pred hhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEee
Q 004253 343 VLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDI 407 (765)
Q Consensus 343 ~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDv 407 (765)
-+..|+++|++.|-+ |--|.. -..+|.+++++.|++.||.+|+++
T Consensus 77 ~~~~l~~~G~~~vii-~~ser~-------------------~~~~e~~~~v~~a~~~Gl~~I~~v 121 (223)
T PRK04302 77 LPEAVKDAGAVGTLI-NHSERR-------------------LTLADIEAVVERAKKLGLESVVCV 121 (223)
T ss_pred HHHHHHHcCCCEEEE-eccccc-------------------cCHHHHHHHHHHHHHCCCeEEEEc
Confidence 488899999999933 322211 123668999999999999999753
No 231
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=25.16 E-value=2.7e+02 Score=32.45 Aligned_cols=102 Identities=16% Similarity=0.243 Sum_probs=65.1
Q ss_pred CCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 332 IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 332 ~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
.+..|-... +-+.-+|+||+|+--++=-+.--. ..|... + .-...+=.++||++|.++||+.|+-+. |
T Consensus 48 a~d~yhry~-eDi~L~~~lG~~~yRfSIsWsRI~--P~g~~~-----~--N~~gl~~Y~~lid~l~~~GI~P~VTL~--H 115 (467)
T TIGR01233 48 ASDFYHKYP-VDLELAEEYGVNGIRISIAWSRIF--PTGYGE-----V--NEKGVEFYHKLFAECHKRHVEPFVTLH--H 115 (467)
T ss_pred cCchhhhHH-HHHHHHHHcCCCEEEEecchhhcc--CCCCCC-----c--CHHHHHHHHHHHHHHHHcCCEEEEecc--C
Confidence 445666665 689999999999987642111000 011100 1 112345578999999999999998765 4
Q ss_pred ccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 004253 412 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (765)
Q Consensus 412 ~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~g 470 (765)
.. -|.++... . -+.|+++..++.+.++.-+++||
T Consensus 116 ~d-------------lP~~L~~~-G-----------GW~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 116 FD-------------TPEALHSN-G-----------DFLNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred CC-------------CcHHHHHc-C-----------CCCCHHHHHHHHHHHHHHHHHhC
Confidence 31 12333321 1 25678999999999999999887
No 232
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=25.05 E-value=85 Score=36.26 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=45.5
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcC-CEEEEeeccccccC
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG-LLVLMDIVHSHASN 414 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~G-I~VIlDvV~NH~~~ 414 (765)
+++|..++++|||.|.| .|+.+.. .-. ..-.|--+.++..+.|+.+++.| +.|.+|+++..-+.
T Consensus 163 ~e~l~~l~~aGvnRiSi-GVQSf~d--------~vL-k~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgq 227 (449)
T PRK09058 163 DEKADAALDAGANRFSI-GVQSFNT--------QVR-RRAGRKDDREEVLARLEELVARDRAAVVCDLIFGLPGQ 227 (449)
T ss_pred HHHHHHHHHcCCCEEEe-cCCcCCH--------HHH-HHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCC
Confidence 47999999999999954 3443321 000 11124446899999999999999 89999999876544
No 233
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=25.00 E-value=1.2e+02 Score=35.09 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=42.4
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
++.|..++++|++.|.+- +.... ....-.+... -+.++..+.++.||+.||.|..++++..
T Consensus 287 ~e~l~~l~~aG~~~v~iG-iES~s--------~~~L~~~~K~-~~~~~~~~~i~~~~~~Gi~v~~~~IiGl 347 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVG-YESGD--------QQILKNIKKG-LTVEIARRFTRDCHKLGIKVHGTFILGL 347 (472)
T ss_pred HHHHHHHHHcCCCEEEEc-CCCCC--------HHHHHHhcCC-CCHHHHHHHHHHHHHCCCeEEEEEEEeC
Confidence 468899999999998743 32211 1111122222 2678999999999999999999998743
No 234
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=24.83 E-value=63 Score=34.97 Aligned_cols=28 Identities=14% Similarity=0.421 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCEEEEeec
Q 004253 380 SSRCGTPDDLKSLIDKAHELGLLVLMDIV 408 (765)
Q Consensus 380 ~~~~Gt~~efk~LV~~aH~~GI~VIlDvV 408 (765)
+....=.+-+++||++|++- |.|+||+-
T Consensus 130 ~~~p~IKE~vR~~I~~A~kV-IAIVMD~F 157 (284)
T PF07894_consen 130 DGQPHIKEVVRRMIQQAQKV-IAIVMDVF 157 (284)
T ss_pred CCCCCHHHHHHHHHHHhcce-eEEEeecc
Confidence 33444578899999999998 99999964
No 235
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=24.77 E-value=67 Score=30.37 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCEEEEe
Q 004253 381 SRCGTPDDLKSLIDKAHELGLLVLMD 406 (765)
Q Consensus 381 ~~~Gt~~efk~LV~~aH~~GI~VIlD 406 (765)
.++.+..|+|.+-....++||+|++|
T Consensus 16 ~ri~s~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 16 QRIMSVKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred cEeeeHHHHHHHHHHHHhCCcEEEEC
Confidence 47788999999999999999999999
No 236
>PRK05967 cystathionine beta-lyase; Provisional
Probab=24.58 E-value=87 Score=35.61 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=28.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccc
Q 004253 378 APSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (765)
Q Consensus 378 a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~N 410 (765)
.|....++..+++++++.||++|+-||+|-++.
T Consensus 157 sPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 157 APGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred CCCCCCCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 344457899999999999999999999998874
No 237
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=24.56 E-value=4.9e+02 Score=28.36 Aligned_cols=99 Identities=21% Similarity=0.241 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHH
Q 004253 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWW 465 (765)
Q Consensus 386 ~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W 465 (765)
.+++.+-|..|+++||+|.--+..+-- | |.++.+++.++.-
T Consensus 167 ~~~y~dav~r~rkrgIkvc~HiI~GLP------------g---------------------------E~~~~mleTak~v 207 (312)
T COG1242 167 FACYVDAVKRLRKRGIKVCTHLINGLP------------G---------------------------ETRDEMLETAKIV 207 (312)
T ss_pred hHHHHHHHHHHHHcCCeEEEEEeeCCC------------C---------------------------CCHHHHHHHHHHH
Confidence 367889999999999999866553211 1 2346788999955
Q ss_pred HHHcCCcEEEecccccccccccCccccccCCCCcccCccCChhHHHHHHHHHHHHhhcCCCceEEeec
Q 004253 466 LEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGED 533 (765)
Q Consensus 466 ~~e~gvDGFRfD~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~~l~~~~~~v~~~~p~~i~iaE~ 533 (765)
+. .+|||..+-...-|-.. -+... |. -|...-.+--+|...+.+.+.-.-|+ ++|--.
T Consensus 208 ~~-~~v~GIKlH~LhvvkgT--~m~k~----Y~--~G~l~~ls~eeYv~~~~d~le~lpp~-vviHRi 265 (312)
T COG1242 208 AE-LGVDGIKLHPLHVVKGT--PMEKM----YE--KGRLKFLSLEEYVELVCDQLEHLPPE-VVIHRI 265 (312)
T ss_pred Hh-cCCceEEEEEEEEecCC--hHHHH----HH--cCCceeccHHHHHHHHHHHHHhCCcc-eEEEEe
Confidence 55 99999999876544211 00000 10 01122233347888888888666454 444443
No 238
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=24.50 E-value=2.2e+02 Score=25.57 Aligned_cols=59 Identities=19% Similarity=0.461 Sum_probs=37.4
Q ss_pred EEEEEecCC--cCeEEEEeec---CCCCCC-ccCCccC----CCceEEEEeCCCCCCCCCCCCCCEEEEEeeCCC
Q 004253 205 ITYREWAPG--AKSASLIGDF---NNWNPN-ADIMTQN----EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS 269 (765)
Q Consensus 205 v~FrvWAP~--A~~V~L~gdF---N~w~~~-~~~m~~~----~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~~~ 269 (765)
++|++=++. -+.|.|+|+- .+|++. ..+|... ++++|++.+.-.. +. ...|||.+...+
T Consensus 9 V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~-~~-----~veYKy~~~~~~ 77 (106)
T cd05811 9 VTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPA-GT-----SFEYKFIRKESD 77 (106)
T ss_pred EEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCC-CC-----cEEEEEEEEcCC
Confidence 677775543 4678899864 579864 5678653 3589998876322 21 347788764433
No 239
>PRK12928 lipoyl synthase; Provisional
Probab=24.38 E-value=1.8e+02 Score=31.53 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=47.5
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeec
Q 004253 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 408 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV 408 (765)
|...+. +.|..|+++|++.|.+.+-.. |+-..-+=.+|=+|++|..+-+.|.+.|..-+.--.
T Consensus 217 T~ed~~-etl~~Lrel~~d~v~i~~Yl~----------p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p 279 (290)
T PRK12928 217 TEDEVI-ETLRDLRAVGCDRLTIGQYLR----------PSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGP 279 (290)
T ss_pred CHHHHH-HHHHHHHhcCCCEEEEEcCCC----------CCccCCceeeccCHHHHHHHHHHHHHcCCceeEecC
Confidence 667777 699999999999998776543 122223446788999999999999999987665433
No 240
>PRK05939 hypothetical protein; Provisional
Probab=24.33 E-value=87 Score=35.51 Aligned_cols=31 Identities=23% Similarity=0.194 Sum_probs=27.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCEEEEeecc
Q 004253 379 PSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (765)
Q Consensus 379 ~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~ 409 (765)
|....|...+++++++.||++|+.||+|-.+
T Consensus 140 p~NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 140 IANPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred CCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 4455788899999999999999999999775
No 241
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=24.03 E-value=84 Score=35.69 Aligned_cols=64 Identities=20% Similarity=0.268 Sum_probs=45.8
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCE-EEEeeccccccC
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 414 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~-VIlDvV~NH~~~ 414 (765)
+++|..|+++|||.|.|- |+.+. ..-.-. -.|--+.++..+.++.+++.|+. |-+|+.+..-+.
T Consensus 115 ~e~l~~l~~~GvnrislG-vQS~~--------d~~L~~-l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgq 179 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLG-VQAFQ--------DELLAL-CGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQ 179 (400)
T ss_pred HHHHHHHHHCCCCEEEEE-cccCC--------HHHHHH-hCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 468999999999999763 23221 111111 23445789999999999999998 789999876554
No 242
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=23.87 E-value=45 Score=33.01 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=34.5
Q ss_pred hhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEE
Q 004253 344 LPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (765)
Q Consensus 344 L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIl 405 (765)
|..++++|++.|+|.+....... .. ..+++++.+.+.+.||.|..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~--------~~---------~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWD--------EK---------DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHT--------HH---------HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccc--------cc---------hHHHHHHHHHHHHcCCeEEE
Confidence 45689999999999876643321 00 68899999999999999654
No 243
>PRK09028 cystathionine beta-lyase; Provisional
Probab=23.47 E-value=93 Score=35.33 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHhhcCCEEEEeeccc
Q 004253 383 CGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (765)
Q Consensus 383 ~Gt~~efk~LV~~aH~~GI~VIlDvV~N 410 (765)
.|...+++++++.||++|+.||+|-++.
T Consensus 159 tg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 159 TMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 4788999999999999999999998764
No 244
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=23.46 E-value=1.3e+02 Score=29.41 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=35.9
Q ss_pred hhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeecc
Q 004253 343 VLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (765)
Q Consensus 343 ~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~ 409 (765)
..--|+.||..+..+. .++..++...-..+.+.++++.+++.|+.|++|...
T Consensus 42 ~a~~l~~LG~~~~~~~---------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~ 93 (196)
T cd00287 42 VAVALARLGVSVTLVG---------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGP 93 (196)
T ss_pred HHHHHHHCCCcEEEEE---------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCc
Confidence 3445788999877666 222333322211478899999999999999999874
No 245
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=23.19 E-value=72 Score=35.72 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=27.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCEEEEeeccc
Q 004253 380 SSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (765)
Q Consensus 380 ~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~N 410 (765)
++..|+..+++++++.||++|+.||+|-++.
T Consensus 168 ~~~tG~~~~l~~I~~la~~~g~~livD~a~~ 198 (387)
T PRK09331 168 DGNYGNLADAKKVAKVAHEYGIPFLLNGAYT 198 (387)
T ss_pred CCCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence 3457888999999999999999999998754
No 246
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=22.96 E-value=87 Score=30.78 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=38.1
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeec
Q 004253 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 408 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV 408 (765)
+|.-.. +-.+-|+++||..-- .+-|..-||+.+.+++++++++|++||+=..
T Consensus 14 D~~~mk-~Aa~~L~~fgi~ye~---------------------~VvSAHRTPe~m~~ya~~a~~~g~~viIAgA 65 (162)
T COG0041 14 DWDTMK-KAAEILEEFGVPYEV---------------------RVVSAHRTPEKMFEYAEEAEERGVKVIIAGA 65 (162)
T ss_pred hHHHHH-HHHHHHHHcCCCeEE---------------------EEEeccCCHHHHHHHHHHHHHCCCeEEEecC
Confidence 454444 567888899985421 2334455899999999999999999998643
No 247
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=22.76 E-value=4.9e+02 Score=28.65 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=60.8
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCcccCC-CCCCCCCccccccCCCCCCCCHHHHHHHHHHHhh--cCCEEEEeecccc
Q 004253 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHS-YYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHE--LGLLVLMDIVHSH 411 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~-~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~--~GI~VIlDvV~NH 411 (765)
+...+. +.+..+.++|+++|-|-|+-+.. ..++-.|++.+ - +.+-|+++++ -.|.||.||-+..
T Consensus 49 s~d~l~-~~~~~~~~~Gi~~v~LFgv~~~Kd~~gs~A~~~~g---------~---v~~air~iK~~~p~l~vi~DvcLc~ 115 (314)
T cd00384 49 SVDSLV-EEAEELADLGIRAVILFGIPEHKDEIGSEAYDPDG---------I---VQRAIRAIKEAVPELVVITDVCLCE 115 (314)
T ss_pred CHHHHH-HHHHHHHHCCCCEEEEECCCCCCCCCcccccCCCC---------h---HHHHHHHHHHhCCCcEEEEeeeccC
Confidence 556666 58889999999999999995431 12223333322 1 2333333333 3799999998765
Q ss_pred ccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEE
Q 004253 412 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGF 474 (765)
Q Consensus 412 ~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGF 474 (765)
......+|+-. .. .-.|.+..+.|.....-..+ -|.|-.
T Consensus 116 YT~hGHcGil~---------------------~~--~idND~Tl~~L~k~Als~A~-AGADiV 154 (314)
T cd00384 116 YTDHGHCGILK---------------------DD--YVDNDATLELLAKIAVSHAE-AGADIV 154 (314)
T ss_pred CCCCCcceecc---------------------CC--cCccHHHHHHHHHHHHHHHH-cCCCee
Confidence 43321122110 00 13467777888877777777 677643
No 248
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=22.75 E-value=1.9e+02 Score=26.41 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=39.9
Q ss_pred hhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEE
Q 004253 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (765)
Q Consensus 342 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIl 405 (765)
.....+..+|++++.+.+...... ..--....|..-+=+.=|...++.++++.||++|++||.
T Consensus 17 ~~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 17 KIAATLSSTGTPAFFLHPTEALHG-DLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHHHHhhcCCCceEEcccchhhcc-ccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 344556778999987755322111 001122333333345667789999999999999999875
No 249
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=22.39 E-value=98 Score=33.13 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=36.4
Q ss_pred hhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccc
Q 004253 344 LPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (765)
Q Consensus 344 L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~ 412 (765)
+..+..-.+..|.+.+.. ++ -| .+=+.++++++++.||++|+.||+|-++...
T Consensus 125 ~~~~~~~~~~~v~i~~~~-~~----tG-----------~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~ 177 (350)
T cd00609 125 LEAAKTPKTKLLYLNNPN-NP----TG-----------AVLSEEELEELAELAKKHGILIISDEAYAEL 177 (350)
T ss_pred HHhhcCccceEEEEECCC-CC----CC-----------cccCHHHHHHHHHHHHhCCeEEEEecchhhc
Confidence 333445567778776622 11 12 1225689999999999999999999987543
No 250
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=21.64 E-value=69 Score=35.33 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCEEEEeeccc
Q 004253 381 SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (765)
Q Consensus 381 ~~~Gt~~efk~LV~~aH~~GI~VIlDvV~N 410 (765)
...|+..+++++++.||++|+.||+|-++.
T Consensus 150 n~tG~~~~~~~i~~~~~~~~~~vivD~a~~ 179 (361)
T cd06452 150 GNYGNLHDAKKIAKVCHEYGVPLLLNGAYT 179 (361)
T ss_pred CCCeeeccHHHHHHHHHHcCCeEEEECCcc
Confidence 345777899999999999999999998864
No 251
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=21.33 E-value=1.1e+02 Score=34.74 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=46.6
Q ss_pred hhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccC
Q 004253 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (765)
Q Consensus 341 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~ 414 (765)
.++|..|+++|||.|.|- |+.+.. .-...-.|.-+.++..+.++.|++.++.|-+|+.+..-+.
T Consensus 111 ~e~l~~l~~~GvnRiSiG-vQS~~d---------~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgq 174 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIG-VQSLKE---------DDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQ 174 (390)
T ss_pred HHHHHHHHHCCCCEEEEE-CCcCCH---------HHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCC
Confidence 368999999999999764 222210 1111234666789999999999999999999999877654
No 252
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=21.15 E-value=1.1e+02 Score=34.40 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=27.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCEEEEeeccc
Q 004253 379 PSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (765)
Q Consensus 379 ~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~N 410 (765)
|....|...+++++++.||++|+.||.|-++.
T Consensus 144 p~Np~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 144 PSSITFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 34456889999999999999999999998764
No 253
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=21.12 E-value=2.6e+02 Score=29.72 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEecc
Q 004253 454 VLRFLLSNARWWLEEYKFDGFRFDG 478 (765)
Q Consensus 454 v~~~i~~~l~~W~~e~gvDGFRfD~ 478 (765)
.++-+++++.-++++||+||+-+|-
T Consensus 97 ~~~~fv~S~~~~l~~~~fDGiDiDw 121 (253)
T cd06544 97 WVSNAVSSLTSIIQTYNLDGIDIDY 121 (253)
T ss_pred HHHHHHHHHHHHHHHhCCCceeeec
Confidence 3444577788889999999999984
No 254
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.10 E-value=2.9e+02 Score=30.98 Aligned_cols=68 Identities=12% Similarity=0.068 Sum_probs=39.1
Q ss_pred HHHHHHHHhhcCCEEEEeeccccccCCCcccCcCCCCCCC-CCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 004253 389 LKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDG-HYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLE 467 (765)
Q Consensus 389 fk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f~g~~~-~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~ 467 (765)
...||+.||++|++|+.--|=+ . +.|-. .+ .||..... ..|. ..-+.+.+..++.
T Consensus 280 ~~~~v~~Ah~~GL~V~~WTvr~-----~----~~~~~-~~~~~~~~~~~---------~~~~-----~~~~~~~~~~~~~ 335 (356)
T cd08560 280 PSEYAKAAKAAGLDIITWTLER-----S----GPLAS-GGGWYYQTIED---------VINN-----DGDMYNVLDVLAR 335 (356)
T ss_pred CHHHHHHHHHcCCEEEEEEeec-----C----ccccc-Ccccccccccc---------cccc-----cccHHHHHHHHHH
Confidence 4589999999999998875521 0 01110 11 23332111 0011 1235556666777
Q ss_pred HcCCcEEEecccc
Q 004253 468 EYKFDGFRFDGVT 480 (765)
Q Consensus 468 e~gvDGFRfD~v~ 480 (765)
+.||||+=-|-..
T Consensus 336 ~~GvDGvftD~p~ 348 (356)
T cd08560 336 DVGILGIFSDWPA 348 (356)
T ss_pred hcCCCEEEccCCC
Confidence 7999999988654
No 255
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=20.96 E-value=80 Score=35.11 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=27.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 379 PSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 379 ~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
|+..+|+..+++++++-||+.|+.||+|-.+..
T Consensus 155 p~~~~G~~~~l~~i~~la~~~~~~livDea~~~ 187 (370)
T TIGR02539 155 VDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTV 187 (370)
T ss_pred CCCCCccccCHHHHHHHHHHcCCeEEEECcccc
Confidence 344568889999999999999999999987654
No 256
>PRK07324 transaminase; Validated
Probab=20.77 E-value=1.4e+02 Score=33.15 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHhhcCCEEEEeeccccc
Q 004253 384 GTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (765)
Q Consensus 384 Gt~~efk~LV~~aH~~GI~VIlDvV~NH~ 412 (765)
-+.++++++++.|+++|+.||.|-+|.+.
T Consensus 170 ~~~~~l~~i~~~a~~~~~~ii~De~y~~l 198 (373)
T PRK07324 170 MDRAYLEEIVEIARSVDAYVLSDEVYRPL 198 (373)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence 36899999999999999999999988554
No 257
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=20.65 E-value=99 Score=32.96 Aligned_cols=22 Identities=45% Similarity=0.912 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhcCCEEEEee
Q 004253 386 PDDLKSLIDKAHELGLLVLMDI 407 (765)
Q Consensus 386 ~~efk~LV~~aH~~GI~VIlDv 407 (765)
.+++++|++.||+.||.|+..|
T Consensus 142 ~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 142 DEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHHHHHHHHHHHHcCCeeEEEE
Confidence 4789999999999999999985
No 258
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=20.64 E-value=5.3e+02 Score=28.47 Aligned_cols=103 Identities=19% Similarity=0.117 Sum_probs=62.5
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCcccC---CCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhh--cCCEEEEeecc
Q 004253 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEH---SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHE--LGLLVLMDIVH 409 (765)
Q Consensus 335 t~~~~~~~~L~yLk~LGvt~I~L~Pi~e~---~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~--~GI~VIlDvV~ 409 (765)
+...+. +.+..+.++|+++|-|-|+... ...++-.|++.+. +.+-|+++++ -.|-||.||-+
T Consensus 52 s~d~l~-~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~------------v~~air~iK~~~p~l~vi~DVcl 118 (320)
T cd04823 52 SIDELL-KEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNL------------VCRAIRAIKEAFPELGIITDVAL 118 (320)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEecCCCcccCCcccccccCCCCh------------HHHHHHHHHHhCCCcEEEEeeec
Confidence 456666 5889999999999999999532 2223344444332 3344444444 48999999987
Q ss_pred ccccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEE
Q 004253 410 SHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGF 474 (765)
Q Consensus 410 NH~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~gvDGF 474 (765)
-.-.....+|+-. .. ...|.+..+.+.....-..+ -|.|-.
T Consensus 119 c~YT~hGHcGil~---------------------~~--~idND~Tl~~L~~~Avs~A~-AGADiV 159 (320)
T cd04823 119 DPYTSHGHDGIVR---------------------DG--GILNDETVEVLCKQALVQAE-AGADIV 159 (320)
T ss_pred cCCCCCCcceecc---------------------CC--cCcCHHHHHHHHHHHHHHHH-hCCCEE
Confidence 6543322112110 00 14567777888887777777 577643
No 259
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.60 E-value=1.5e+02 Score=31.48 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=35.3
Q ss_pred hhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEE
Q 004253 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (765)
Q Consensus 342 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIl 405 (765)
+.++-++++|+++|+|.+-- . +.+ +...--++++++++-+.+.+.||.|..
T Consensus 25 e~~~~~~~~G~~~iEl~~~~-~-----~~~-------~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 25 EKLAIAKTAGFDFVEMSVDE-S-----DER-------LARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHHHHcCCCeEEEecCc-c-----ccc-------hhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 68899999999999995321 0 010 011112567899999999999999863
No 260
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=20.24 E-value=3.2e+02 Score=24.34 Aligned_cols=57 Identities=14% Similarity=0.250 Sum_probs=34.8
Q ss_pred EEEEEecCC--cCeEEEEee---cCCCCCC-ccCCccC---CCceEEEEeCCCCCCCCCCCCCCEEEEEeeC
Q 004253 205 ITYREWAPG--AKSASLIGD---FNNWNPN-ADIMTQN---EFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 267 (765)
Q Consensus 205 v~FrvWAP~--A~~V~L~gd---FN~w~~~-~~~m~~~---~~GvW~i~lp~~~~G~~~~~~g~~y~~~~~~ 267 (765)
++|++=..+ -+.|.|+|+ ..+|+.. +.+|... +...|++.|.-.. +. ...|||.+..
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~-~~-----~veYky~v~~ 67 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPP-GF-----SSEYNYYVVD 67 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCC-CC-----cEEEEEEEEc
Confidence 456665444 367888874 4678864 5678542 3358988776422 21 3578887743
No 261
>PRK07050 cystathionine beta-lyase; Provisional
Probab=20.12 E-value=1.2e+02 Score=34.36 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCEEEEeecccc
Q 004253 382 RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (765)
Q Consensus 382 ~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH 411 (765)
..|.+.+++++++.||++|+.||+|-.++.
T Consensus 162 p~~~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 162 VTMEVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred CCccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 457899999999999999999999998755
No 262
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=20.11 E-value=3.8e+02 Score=31.19 Aligned_cols=103 Identities=17% Similarity=0.283 Sum_probs=63.8
Q ss_pred CCCCCHHhhHhhhhhHHHHcCCCEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccc
Q 004253 331 PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (765)
Q Consensus 331 ~~~Gt~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~N 410 (765)
..+..|.-.. +-+.-+|+||+|+--++=-+.--. ..|.. .+ .--..+=.++||++|.++||..|+-+.
T Consensus 48 ~a~d~Y~ry~-eDi~L~~~lG~~~yRfSIsWsRI~--P~G~g-----~v--N~~gl~~Y~~lid~l~~~GI~P~VTL~-- 115 (469)
T PRK13511 48 PASDFYHRYP-EDLKLAEEFGVNGIRISIAWSRIF--PDGYG-----EV--NPKGVEYYHRLFAECHKRHVEPFVTLH-- 115 (469)
T ss_pred cccchhhhhH-HHHHHHHHhCCCEEEeeccHhhcC--cCCCC-----Cc--CHHHHHHHHHHHHHHHHcCCEEEEEec--
Confidence 3445666665 689999999999987642111000 01110 01 112356678999999999999999876
Q ss_pred cccCCCcccCcCCCCCCCCCcccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 004253 411 HASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (765)
Q Consensus 411 H~~~~~~~~~~~f~g~~~~yf~~~~~g~~~~w~~~~ln~~~~~v~~~i~~~l~~W~~e~g 470 (765)
|.. -|.++... . -|.|+++.+.+.+.++.-+++||
T Consensus 116 H~d-------------lP~~L~~~-G-----------GW~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 116 HFD-------------TPEALHSN-G-----------DWLNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred CCC-------------CcHHHHHc-C-----------CCCCHHHHHHHHHHHHHHHHHhC
Confidence 331 12333321 1 24567888888888888888776
No 263
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=20.09 E-value=1.2e+02 Score=33.50 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=29.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCEEEEeecccccc
Q 004253 379 PSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (765)
Q Consensus 379 ~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~ 413 (765)
|.+..=+.++++++++.|+++|+-||.|=++.+..
T Consensus 154 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 188 (357)
T TIGR03539 154 PTGRVLSVDELRAIVAWARERGAVVASDECYLELG 188 (357)
T ss_pred CcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhc
Confidence 44455578999999999999999999999986654
No 264
>PTZ00376 aspartate aminotransferase; Provisional
Probab=20.07 E-value=1.3e+02 Score=33.94 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=35.9
Q ss_pred CEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHhhcCCEEEEeeccccccC
Q 004253 353 NAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (765)
Q Consensus 353 t~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~~efk~LV~~aH~~GI~VIlDvV~NH~~~ 414 (765)
+.+.++|-..+|. +..=+.++++++++.|+++|+-||.|-+|.+...
T Consensus 177 ~~~~~~~~p~NPT---------------G~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~ 223 (404)
T PTZ00376 177 SVVLLHACAHNPT---------------GVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFAS 223 (404)
T ss_pred CEEEEeCCCCCCC---------------CCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccC
Confidence 5677666544443 3444789999999999999999999999877643
Done!