Citrus Sinensis ID: 004254

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-----
Protein Sequence
MASCSCSSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPEFIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHcccHHHHHcccccccccccHHHHHHEEEEcccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccEEEcccccccccccEEEEccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccEEcccccccccEEEEEEEEccccccccccccccccccEEEEEEEccccEEEEccccccccccccEEEEcccccEEEccccccccccEcccccccccccEccccccEEEEEcccccEEEEEcccccccHHHHHHccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHcHccccHHHHHHHHHHHHcccEEEEEcHHcccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHEEEEEcccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcEEEEccccccEEEEEEccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccEEEEccccccEEEEEcccEEcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccHHHHccccHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccc
Coil and Loop (DISEMBL)
mascscssslalpelrflspkaasRYHLSLSKQSLYRSFlyknyprcnlgrrirvaagkqdgsvvveekrepefikglndfevngngsasrsdsvgsvnggvngyaNGSLVKYVNGNGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDawfkksgqekvevsvapggrwsrfktYSTIQRTLEIWGFVLTFVFRAWLNnqkfsyrggmtEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSelqdqvppfpsetAVSIVEEelgaplddvferfdvepiaaaSLGQVHRARLKGEEVVVKVqrpglkdlfdiDLKNLRVIAEYLQkidpksdgakrdWVAIYDECASVLYQEIDYTQEAANAELFasnfkdmdyvkvptifweyttpqiltmeyvpgikinriQSLDELGVDRKRLGRYAVESYLEQILShgffhadphpgniavddvnggrlifydfgmmgsispnIREGLLEAFYGIYEKDADKVLQAMVQMGvlvptgdttaVRRTAQFFLNSFEERLAAQRKEREITtqelgfkkplskEEKIEKKKQRLAAIGEDLLAIaadqpfrfpatFTFVVRAFSVLdgigkgldprfditEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA
Flexible Loop (DISEMBL)
mascscssslalpeLRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVaagkqdgsvvveekrepefikglndfevngnGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGGVAVEVVgqveeeeklnkeierkkkveeigkedawfkksgqekvevsvapggrwsrfkTYSTIQRTLEIWGFVLTFVFRAWLNNqkfsyrggmteekKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEevvvkvqrpglkdlfdidlKNLRVIAEYlqkidpksdgakrdWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQrkereittqelgfkkplskeekIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKvkkldqreklitgta
Low Complexity Region (SEG)
MascscssslalPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPEFIKGLNDFEVNGNGSAsrsdsvgsvnggvngyangsLVKYvngngnggvavevvgqveeeeklnkeierkkkveeigkeDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA
Disordered region (IsUnstruct)
****************FL****ASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVV********I***********************NGGVNGYANGSLVKYVNGNGNGGVAVEVVGQ*************************WF*******VEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSEL**********TAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEE**********************************LAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLD**********
Disordered Region (DISOPRED)
************PELRFLSPKAAS**************************************************************************************************************************************************GGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTE********ALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLI****
Disordered Region (DISEMBL)
*********LALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPEFIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA
Disordered Region (DISPRO)
****SCSSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPEFIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGGVAVEVVGQVEEEEKLNKE**************AWFK****EKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLI****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASCSCSSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPEFIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGGVxxxxxxxxxxxxxxxxxxxxxKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFxxxxxxxxxxxxxxxxxxxxxLGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	765	2.2.26 [Sep-21-2011]
P73627	585	Uncharacterized protein s	N/A	no	0.711	0.929	0.439	1e-139
Q55884	567	Uncharacterized protein s	N/A	no	0.622	0.839	0.360	2e-93
Q55680	681	Uncharacterized protein s	N/A	no	0.618	0.694	0.346	2e-78
P73121	566	Uncharacterized protein s	N/A	no	0.573	0.775	0.337	2e-73
Q9MA15	711	Uncharacterized aarF doma	no	no	0.580	0.624	0.328	5e-67
Q8RWG1	682	Uncharacterized aarF doma	no	no	0.628	0.705	0.318	4e-64
Q94BU1	692	Uncharacterized aarF doma	no	no	0.498	0.550	0.347	7e-63
Q7NZD1	508	Probable ubiquinone biosy	yes	no	0.469	0.706	0.370	4e-60
Q63X97	525	Probable ubiquinone biosy	yes	no	0.590	0.860	0.319	5e-59
A3N5V1	525	Probable ubiquinone biosy	yes	no	0.590	0.860	0.319	5e-59

>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1770 PE=3 SV=1

 Score =  496 bits (1278), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/598 (43%), Positives = 386/598 (64%), Gaps = 54/598 (9%)

Query: 173 RWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKES 232
           RW+R   YS  +R ++IWGFVLT +++ WLN +K+SY GG TEEK   RR+  AKW++E+
Sbjct: 33  RWNR-GNYSITRRRIDIWGFVLTLLYQFWLNGKKWSYAGGYTEEKLQQRRRRQAKWIREN 91

Query: 233 ILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDV 292
           +L LGPTFIK+GQ FSTR D+   EYV+ELS+LQD+VP F  E A  I+EEELG P+  +
Sbjct: 92  LLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQAAGIIEEELGKPIAKL 151

Query: 293 FERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP 351
           +  FD  P+AAASLGQVH+A+L  GE+VVVKVQRPGLK LF IDL  L+ IA+Y Q   P
Sbjct: 152 YRSFDPVPLAAASLGQVHKAQLHTGEDVVVKVQRPGLKKLFTIDLAILKKIAQYFQN-HP 210

Query: 352 KSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQI 411
           K  G  RDW  IY+EC  +L+QE DY +E  +A+ F  NF+  D+VKVP ++W YT+ QI
Sbjct: 211 KW-GRGRDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGEDWVKVPRVYWRYTSTQI 269

Query: 412 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 471
           LT+EY+PGIKI+   +L+  G++RK L +    +YL Q+L+HGFFHADPHPGN+AV    
Sbjct: 270 LTLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGFFHADPHPGNLAVSP-E 328

Query: 472 GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT 531
            G LIFYDFGMMG I+P+ +  L++  +G+ EK+A++++ ++V +G L  T D   +RR+
Sbjct: 329 AGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVALGALKETEDMGPIRRS 388

Query: 532 AQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQP 591
            QF L++F +                   KP         ++Q +  I +DL  IA DQP
Sbjct: 389 VQFLLDNFMD-------------------KPF--------EEQSITKISDDLYEIAYDQP 421

Query: 592 FRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLK----FREAGVEVILKDF 647
           FRFPATFTFV+RAFS L+G+GKGLDP F+   +A+P+A++++     F  AG      + 
Sbjct: 422 FRFPATFTFVMRAFSTLEGVGKGLDPDFNFMAVAQPFALQIMNNSNGFNPAG------NI 475

Query: 648 RNRWDRQTRAFYNLFRQADRVEKLAETIQRL-QGDLKLRVRTLESERAFQRVAAVQKTVG 706
            +   RQ     N      R  ++ +++ RL +GD+++RVR+ E++R  +R+  +Q    
Sbjct: 476 MDELGRQAVQVGNSALGLPR--RIEDSLDRLDRGDIRVRVRSTETDRLLRRMGTMQMGTN 533

Query: 707 SAVGAGSLVNLATILYLNSIRVPA---ILAYVSCAFFGFQVLFGIIKVKKLDQREKLI 761
             +   +LV  AT+L++N+  + A   +L  +  AF  +++L      K+L++++++ 
Sbjct: 534 YVLFTCALVLSATLLFVNNYFMAAAVVLLMSLVPAFALWRLL------KRLERQDRMF 585

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0095 PE=3 SV=1

 Score =  343 bits (881), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 197/546 (36%), Positives = 310/546 (56%), Gaps = 70/546 (12%)

Query: 192 FVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRV 251
           F+L   F +W           +T  +   RR   A+WL + +L LGPTFIKIGQ  STR 
Sbjct: 33  FLLFVFFLSW---------DRLTAPRSAQRRYRRAQWLVQQLLYLGPTFIKIGQSLSTRA 83

Query: 252 DILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHR 311
           DI+  EY++  ++LQD+VPPF S  A++++E+EL   +D++F++F+V P+A+ASLGQVHR
Sbjct: 84  DIIPAEYIEAFTQLQDRVPPFDSRQAIAVIEQELHGAIDEIFQQFEVTPLASASLGQVHR 143

Query: 312 ARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP--KSDGAKRDWVAIYDECA 368
           A L  GE VVVKVQRPGL  L ++D + L       ++  P  +    K +  AIY E  
Sbjct: 144 AVLPTGEAVVVKVQRPGLDSLLNLDFELLHQTLRLAKRWLPGFRRLAQKYEIEAIYQEFF 203

Query: 369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL 428
           S+L+ EIDY  E  NAE F  NF D   V+VP I+W+YTT  +LT+EY+PGIK++  Q+L
Sbjct: 204 SLLFLEIDYIHEGKNAERFRQNFADYPRVRVPEIYWQYTTRMVLTLEYLPGIKVDDRQAL 263

Query: 429 DELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP 488
           +  G++   + +  + +YL+Q+L  GFF +DPHPGN+AVD  + G LIFYDFG M  +  
Sbjct: 264 ETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAVD--SQGDLIFYDFGTMAEVKI 321

Query: 489 NIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRK 548
             ++ +++ F+ +  KD ++VL+A++ MG++ P GD + ++R   F L++F +       
Sbjct: 322 IAKDQMVQTFFAVLRKDTNQVLEALIYMGLVEPKGDLSPIKRIINFLLDNFRD------- 374

Query: 549 EREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVL 608
                       KP+     I+   Q    +GE++ A+   QPFR P   TF++++ S L
Sbjct: 375 ------------KPID----IKAFDQ----VGEEVYAMFQQQPFRLPPQMTFILKSISTL 414

Query: 609 DGIGKGLDPRFDITEIAKPY-------------AMELLKFREAGVEVILKDFRNRWDRQT 655
           DGI + LDPR+++   ++P+             AM LL+     V+    D  NR  R  
Sbjct: 415 DGIARALDPRYNLIAASQPFIQSITVAQPKRSLAMALLQ----QVKQFALDQLNRPSRNQ 470

Query: 656 RAFYNLFRQADRVEKLAETIQRLQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLV 715
           +           +++LA  ++R  G+L+   R+ E +R  +++    K++  A   G  +
Sbjct: 471 QF----------LQELAAKLER--GELQFATRSPEGDRLLRKIHLALKSLIFACLTGFTL 518

Query: 716 NLATIL 721
             AT+L
Sbjct: 519 LSATVL 524

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0005 PE=3 SV=1

 Score =  294 bits (753), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 184/531 (34%), Positives = 283/531 (53%), Gaps = 58/531 (10%)

Query: 143 KKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWL 202
           K  +E++G     F +S +   ++ +     + R +    + R + I   +L F+   W 
Sbjct: 34  KSHLEDLGPVSDMFPESWEYHPDLIM----EFYRKRPLQVLGRLINILFPLLRFILGIWW 89

Query: 203 NNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDEL 262
                  RG   ++  V R KA+   L+E +  LGPT+IK+GQ  STR D++   ++DEL
Sbjct: 90  EK----LRG---KDPTVSRAKAIQ--LRELLTNLGPTYIKVGQALSTRPDLVPPVFLDEL 140

Query: 263 SELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVV 321
           + LQDQ+P FP+E A   +EEELGAP ++++     EPIAAASLGQV++ +LK GE V V
Sbjct: 141 TTLQDQLPSFPNEVAYRFIEEELGAPAEEIYAELSPEPIAAASLGQVYKGKLKTGEAVAV 200

Query: 322 KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEA 381
           KVQRP L     +D+  +R ++ + ++        + D VAI DE AS +++E++Y QEA
Sbjct: 201 KVQRPDLVRRITLDIYIMRSLSLWARR---SVKRLRSDLVAITDELASRVFEEMNYYQEA 257

Query: 382 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY 441
            N E FA  +  +  + VP+I+W+YT  ++LTME+V GIK+  I+++   G+D   L   
Sbjct: 258 INGEKFAQLYGSLPEIYVPSIYWQYTGRRVLTMEWVEGIKLTNIKAIQAQGIDATHLVEV 317

Query: 442 AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGI 501
            V+  L Q+L HGFFHADPHPGN+    +  GRL + DFGMM +I P  R GL+EA   +
Sbjct: 318 GVQCSLRQLLEHGFFHADPHPGNLLA--MADGRLAYLDFGMMSTIQPYQRYGLIEAVVHL 375

Query: 502 YEKDADKVLQAMVQMGVLVPTGDTTA-VRRTAQFFLNSFEERLAAQRKEREITTQELGFK 560
             +D D + +  V++  L P  D    +    Q F N+    +A           EL FK
Sbjct: 376 VNRDFDSLAKDYVKLDFLKPDTDLKPIIPALGQVFGNALGASVA-----------ELNFK 424

Query: 561 KPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFD 620
                            +I + + A+  + PFR PA +  ++R+   L+GI  G+DP F 
Sbjct: 425 -----------------SITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGIDPNFK 467

Query: 621 ITEIAKPYAMELL------KFREAGVEVILKDFRNRWDRQTRAFYNLFRQA 665
           +   A PY  + L      + R +  E++ K+   RW+R      NL R A
Sbjct: 468 VLSKAYPYIAKRLLTDQSEELRTSLKELLFKEGSFRWNR----LENLLRNA 514

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1919 PE=3 SV=1

 Score =  278 bits (710), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 166/492 (33%), Positives = 252/492 (51%), Gaps = 53/492 (10%)

Query: 172 GRWSRFKTYSTIQRTLEI---WGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKW 228
             + R + +  + R LE+   +GF LT +       Q   Y+    E+            
Sbjct: 25  ANYYRRRPWKVLWRALEVVWSFGFFLTCLLWDQWTGQVEYYKRQRAED------------ 72

Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
           L+E + +LGPTFIK+GQ  STR D++ +++++EL +LQDQ+PPF ++ A  ++EE+LG  
Sbjct: 73  LRELLTKLGPTFIKVGQALSTRPDLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQLGMK 132

Query: 289 LDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
           +D+ +      P+AAASLGQV+RA L  GEEV VKVQRP L+    +DL  +R+ A+   
Sbjct: 133 VDEAYREISAHPVAAASLGQVYRAMLFSGEEVAVKVQRPNLRPRLSLDLYLMRLGAQKFG 192

Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
           +  P + G   D   I DE    L++EIDY  E  NAE FA NF     VKVP I+W+Y+
Sbjct: 193 RFLPLNLG--HDLTLIVDEFGIKLFEEIDYLNEGRNAEKFAENFHGDAEVKVPCIYWQYS 250

Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV 467
             ++LT+E++ G K+     +   G+D   + R  V S L Q+L HGFFHADPHPGN+  
Sbjct: 251 NQKVLTLEWIQGFKLTDTDKIRAAGLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFA 310

Query: 468 DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA 527
                GR+ + DFGMM  + P  +E +  +   +  KD   + +  + +G L P  D T 
Sbjct: 311 --TLDGRMAYIDFGMMDQLEPGTKETIASSIVQLINKDYLALTEDFIALGFLAPNTDITP 368

Query: 528 VRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIA 587
           +    +   N F   +         + Q+  FK                  I +D   + 
Sbjct: 369 IIPALE---NVFGSAIGQ-------SVQDFNFK-----------------TITDDFSELM 401

Query: 588 ADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELL------KFREAGVE 641
            D PFR PA F  ++R+    +G+   LDP F I E+A PY    L      + R   ++
Sbjct: 402 YDYPFRVPAKFALIIRSLVTQEGLALSLDPNFKIVEVAYPYVARRLLTGESPQLRRQLID 461

Query: 642 VILKDFRNRWDR 653
           V+ K+ + +W R
Sbjct: 462 VLFKNGKFQWQR 473

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1 SV=1

 Score =  256 bits (654), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 164/499 (32%), Positives = 256/499 (51%), Gaps = 55/499 (11%)

Query: 178 KTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLG 237
           + +  ++R+LEI G +  F  +  ++ ++ +    M +    LRR            RLG
Sbjct: 108 QPFKALRRSLEILGALGGFALKLGIDQKQGNLEKNMKKRAIELRR---------IFTRLG 158

Query: 238 PTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFD 297
           PTF+K+GQ  STR D+   +Y++EL+ELQD +P FP   A + +E EL   L+ +F    
Sbjct: 159 PTFVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLETIFSSVS 218

Query: 298 VEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDG 355
            EPIAAASLGQV++A+L+  G+ V VKVQRPG+++   +D   +R + + + K     D 
Sbjct: 219 PEPIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKY---VDF 275

Query: 356 AKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTME 415
              D + + DE A  +YQE++Y QEA NA  F   + D   V VP IFW+YT+ ++LTME
Sbjct: 276 ITTDVLTLIDEFACRVYQELNYVQEAQNARRFKKLYADKADVLVPDIFWDYTSRKVLTME 335

Query: 416 YVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGN-IAVDDVNGGR 474
           +V G K+N   +++  G+    L    ++  L Q+L +GFFHADPHPGN +A  D   G+
Sbjct: 336 WVEGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPD---GK 392

Query: 475 LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF 534
           L F DFGMM       R  ++     +  +D + + +    +  L P  D T +    + 
Sbjct: 393 LAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALRD 452

Query: 535 FLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRF 594
           F   F++ L         T  EL FK                  + + L A+    PF  
Sbjct: 453 F---FDDAL-------NYTVSELNFK-----------------TLVDGLGAVFYQYPFNV 485

Query: 595 PATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPY-AMELLK-----FREAGVEVILKDFR 648
           P  +  ++R+ +VL+G+    DP F +   + PY A  LL       R+A +E++ KD +
Sbjct: 486 PPYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALIELLFKDGK 545

Query: 649 NRWDRQTRAFYNLFRQADR 667
            RW+R      NL +Q  +
Sbjct: 546 FRWNR----LENLLQQGSK 560

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: -

EC: .

EC: -

>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1 SV=1

 Score =  246 bits (629), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 174/547 (31%), Positives = 264/547 (48%), Gaps = 66/547 (12%)

Query: 156 FKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEI-WGFVLTFVFRAWLNNQKFSYRGGMT 214
           F+K   E V   V      SR    S + R +EI W   L      + +   + +  G  
Sbjct: 110 FRKYSPETVRSKVLE----SRGAVVSLVSRGVEIVWTLGL------YWSTLTYDFLVGRD 159

Query: 215 EEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPS 274
           EE    R    A+ L+  +  LGP+FIK GQ  + R DI+ ++Y++EL  LQD VPPFP+
Sbjct: 160 EEVVPFR----ARQLRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPN 215

Query: 275 ETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLF 332
           E A +I+EEELG PL+++F +   + IAAASLGQV+RA L+  GE+V +KVQRP ++ + 
Sbjct: 216 EVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVYRATLRATGEDVAIKVQRPQIEPII 275

Query: 333 DIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFK 392
             DL   R +A +L     +  G   +   I DE    L +E+DYT EA N E F  NFK
Sbjct: 276 YRDLFLFRTLASFLNGFSLQKLGCNAEL--IVDEFGEKLLEELDYTLEARNIEDFLENFK 333

Query: 393 DMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS 452
           D   VK+P ++     P++L ME++ GI+    Q++ + G+D        V + L Q+L 
Sbjct: 334 DDPTVKIPGVYKNLCGPRVLVMEWIDGIRCTDPQAIKDAGIDLNGFLTVGVSAALRQLLE 393

Query: 453 HGFFHADPHPGNI-AVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ 511
            G FH DPHPGNI A+ D   GR+ + DFG +  +S   ++ L++A      +D  ++  
Sbjct: 394 FGLFHGDPHPGNIFAMQD---GRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYGEMAN 450

Query: 512 AMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEK 571
              ++G L    D + +    +    +   +  A    R +T Q   F K          
Sbjct: 451 DFTRLGFLAKDTDVSPIVPALEAIWQNSAGKGLADFNFRSVTGQ---FNK---------- 497

Query: 572 KKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAME 631
                         +  D P R P  F+ V+R+    +GI   L P F   E+A PY  +
Sbjct: 498 --------------LVYDFPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAK 543

Query: 632 LL------KFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLQGDLKLR 685
            L        RE  ++V+ KD   +W R      NL   A       E + ++  +  LR
Sbjct: 544 RLLTDPNPALRERLIQVLFKDGVFQWKR----LENLLSLA------KENVAKMSSNPNLR 593

Query: 686 VRTLESE 692
           V+ +ES+
Sbjct: 594 VKRVESK 600

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: -

EC: .

EC: -

>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1 SV=1

 Score =  242 bits (618), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 149/429 (34%), Positives = 230/429 (53%), Gaps = 48/429 (11%)

Query: 207 FSYRGGMTEEKKVLRR-----KALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDE 261
           FSY  G+    + L R     K  A  L++ ++ LGP ++KI Q  S+R D++   Y+DE
Sbjct: 96  FSYWFGLRLADEALERSDQMFKVRAAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDE 155

Query: 262 LSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEV 319
           LS LQDQ+ PF +E A +++E+ELG P+D++F     EP+AAASLGQV++ARL+  G+ V
Sbjct: 156 LSLLQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVV 215

Query: 320 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQ 379
            VKVQRPG++    +D   LR IA  ++    K+     D  A+ DE A+ L++E+DY  
Sbjct: 216 AVKVQRPGVRAAIALDTLILRYIAGLIK----KAGRFNSDLEAVVDEWATSLFKEMDYLN 271

Query: 380 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG 439
           EA N   F   +  +  V VP ++ EY+T ++L ME+V G K+N +  L         L 
Sbjct: 272 EAQNGIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEGQKLNEVNDL--------YLV 323

Query: 440 RYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFY 499
              V     Q+L +GF+HADPHPGN        G+L + DFGMMG   P +R+G +EA  
Sbjct: 324 EVGVYCSFNQLLEYGFYHADPHPGNFL--RTYDGQLAYLDFGMMGDFRPELRDGFMEACL 381

Query: 500 GIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGF 559
            +  +D   + +  V +G+L PT + +AV +      + F++  A  R  R I+  +L  
Sbjct: 382 HLVNRDFKALAKDFVTLGLLPPTAEKSAVTKA---LTDVFQD--AISRGVRNISFGDL-- 434

Query: 560 KKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRF 619
                           L  +G+ +        FR P  F+ V+R+ +VL+GI  G+ P +
Sbjct: 435 ----------------LGDLGKTMYRFK----FRIPPYFSLVIRSLAVLEGIAIGISPNY 474

Query: 620 DITEIAKPY 628
            +     P+
Sbjct: 475 KVLGSTYPW 483

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: -

EC: .

EC: -

>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1

 Score =  233 bits (594), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 149/402 (37%), Positives = 223/402 (55%), Gaps = 43/402 (10%)

Query: 236 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 295
           LGP F+K GQ  STR D+L  EY DEL+ LQD+VPPF  + A  +VE  LG  ++++F  
Sbjct: 59  LGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLGRKVEELFVD 118

Query: 296 FDVEPIAAASLGQVHRARLK------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKI 349
           FD++P+A+AS+ QVH+A L+      G EV VKV RPG+  + + DL  +R +A +++K+
Sbjct: 119 FDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVIEQDLSLMRTLAGWVEKL 178

Query: 350 DPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTP 409
              +DG +     +  E    L+ E+D   EAANA     NFK  D + VP +F++Y++ 
Sbjct: 179 --FADGKRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDMLIVPEVFYDYSSR 236

Query: 410 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDD 469
           ++LT+E++ GI + +I+ L E GVD ++L R+ VE +  Q+  HGFFHAD HPGNI V  
Sbjct: 237 EVLTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFFTQVFRHGFFHADMHPGNIFV-- 294

Query: 470 VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR 529
              GR I  DFG++GS++   +  L   F   + +D  +V  A ++ G  VP  DT A  
Sbjct: 295 AADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATAHIESG-WVPR-DTRA-- 350

Query: 530 RTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAI-AA 588
                     EE  AA R     T  E  F+KPLS+            + G  LL +   
Sbjct: 351 ----------EELEAAVR-----TVCEPIFEKPLSE-----------ISFGMVLLRLFET 384

Query: 589 DQPFRFPATFTFVVRAFSVLD--GIGKGLDPRFDITEIAKPY 628
            + F        V+   ++L+  G+G+ LDP  D+ + AKP+
Sbjct: 385 SRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWDTAKPF 426

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) (taxid: 243365)

>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia pseudomallei (strain K96243) GN=ubiB PE=3 SV=1

 Score =  229 bits (585), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 168/526 (31%), Positives = 272/526 (51%), Gaps = 74/526 (14%)

Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
           L+ ++  LGP F+K GQ  STR D+L  ++ +EL++LQDQVPPF S  A++IVE+ LGA 
Sbjct: 52  LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111

Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
           +D +F+ F+  P+A+AS+ QVH A+LK     G+ V VKV RP +  + D DL  +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171

Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
            + +++   +DG +   R+ VA +D+    L+ E+D  +EAAN      NF  +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226

Query: 401 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 460
            +FW+Y+TP +L ME + G+ I+++ +L   GVD  +L R  VE +  Q+   GFFHAD 
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286

Query: 461 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV 518
           HPGNI V  D  + GR I  DFG++G++S   +  L + F   +++D  +V    ++ G 
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346

Query: 519 LVPTGDT------TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEK 571
           + P  DT      +A+R   + +F  + ++    Q   R  +T         S+   +E 
Sbjct: 347 VPP--DTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEI 395

Query: 572 KKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAME 631
           + Q L  + + +L +                      +G+G+ LDP  D+ + AKPY +E
Sbjct: 396 QPQ-LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY-LE 431

Query: 632 LLKFREAGVEVILKDFR---NRWDRQTRAFYNLFRQADRVEKLAETIQRLQGDLKLRVRT 688
                + G+    + F+    +W +       L  QA  +    E  + +  DL  ++  
Sbjct: 432 RWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQA--LISHHEAPRAISDDLIRQI-- 487

Query: 689 LESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAY 734
           L  +R   R+       G AVGAG+++           RV  +LAY
Sbjct: 488 LVEQRRTNRLLQALLVFGLAVGAGAVIA----------RVLIVLAY 523

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Burkholderia pseudomallei (strain K96243) (taxid: 272560)

>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia pseudomallei (strain 668) GN=ubiB PE=3 SV=1

 Score =  229 bits (585), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 168/526 (31%), Positives = 272/526 (51%), Gaps = 74/526 (14%)

Query: 229 LKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAP 288
           L+ ++  LGP F+K GQ  STR D+L  ++ +EL++LQDQVPPF S  A++IVE+ LGA 
Sbjct: 52  LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111

Query: 289 LDDVFERFDVEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIA 343
           +D +F+ F+  P+A+AS+ QVH A+LK     G+ V VKV RP +  + D DL  +R IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171

Query: 344 EYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
            + +++   +DG +   R+ VA +D+    L+ E+D  +EAAN      NF  +D + VP
Sbjct: 172 TWAERL--WADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVP 226

Query: 401 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP 460
            +FW+Y+TP +L ME + G+ I+++ +L   GVD  +L R  VE +  Q+   GFFHAD 
Sbjct: 227 EMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADM 286

Query: 461 HPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV 518
           HPGNI V  D  + GR I  DFG++G++S   +  L + F   +++D  +V    ++ G 
Sbjct: 287 HPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGW 346

Query: 519 LVPTGDT------TAVRRTAQ-FFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEK 571
           + P  DT      +A+R   + +F  + ++    Q   R  +T         S+   +E 
Sbjct: 347 VPP--DTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFST---------SRRFNVEI 395

Query: 572 KKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAME 631
           + Q L  + + +L +                      +G+G+ LDP  D+ + AKPY +E
Sbjct: 396 QPQ-LVLLQKTMLNV----------------------EGLGRSLDPELDLWKTAKPY-LE 431

Query: 632 LLKFREAGVEVILKDFR---NRWDRQTRAFYNLFRQADRVEKLAETIQRLQGDLKLRVRT 688
                + G+    + F+    +W +       L  QA  +    E  + +  DL  ++  
Sbjct: 432 RWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQA--LISHHEAPRAISDDLIRQI-- 487

Query: 689 LESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAY 734
           L  +R   R+       G AVGAG+++           RV  +LAY
Sbjct: 488 LVEQRRTNRLLQALLVFGLAVGAGAVIA----------RVLIVLAY 523

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Burkholderia pseudomallei (strain 668) (taxid: 320373)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	765
224096282	765	predicted protein [Populus trichocarpa]	0.973	0.973	0.789	0.0
356516279	752	PREDICTED: uncharacterized protein sll17	0.979	0.996	0.790	0.0
356525527	757	PREDICTED: uncharacterized protein sll17	0.962	0.972	0.779	0.0
449516721	761	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.979	0.984	0.775	0.0
449451493	761	PREDICTED: uncharacterized protein sll17	0.979	0.984	0.776	0.0
356512736	756	PREDICTED: uncharacterized protein sll17	0.956	0.968	0.783	0.0
357519623	735	ABC transporter-like protein [Medicago t	0.946	0.985	0.782	0.0
356509050	749	PREDICTED: uncharacterized protein sll17	0.975	0.995	0.786	0.0
224083787	627	predicted protein [Populus trichocarpa]	0.814	0.993	0.900	0.0
297794095	755	hypothetical protein ARALYDRAFT_919821 [	0.977	0.990	0.774	0.0

>gi|224096282|ref|XP_002310598.1| predicted protein [Populus trichocarpa] gi|222853501|gb|EEE91048.1| predicted protein [Populus trichocarpa]

 Score = 1218 bits (3151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/780 (78%), Positives = 679/780 (87%), Gaps = 35/780 (4%)

Query: 6   CSSSLALPELRFLSPKAASRYH----LSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQD 61
            +SSL LPEL FLSPK  +  H    LSLS+ S  +  +     + NL  R  V    ++
Sbjct: 1   MASSLPLPELIFLSPKTRTPKHHHHLLSLSRHSFSKLNVSGKKNKFNLPLRTPVTRAVKE 60

Query: 62  GSVVVEEKREPEFIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGSL----------- 110
            + V+EE RE E +K     E+NGNG+         VNG V  Y NG L           
Sbjct: 61  DTAVIEE-REREILK-----ELNGNGNRR-------VNGSVERYVNGGLVSVEEGESSSN 107

Query: 111 ---VKYVNGNGNGGV-AVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEV 166
              VKYVNGNG   V   E++  VEE+++ +KE  R+K++EEIGKEDAWFK++GQ+++EV
Sbjct: 108 ESLVKYVNGNGAAAVETAEIL--VEEKKEGSKEEGRQKRIEEIGKEDAWFKRAGQQQIEV 165

Query: 167 SVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALA 226
           SVAPGGRWSRFKTYSTIQRTLEIWG VLTF+F+AWLNNQKFSYRGGMTEEKK++RRKALA
Sbjct: 166 SVAPGGRWSRFKTYSTIQRTLEIWGSVLTFIFKAWLNNQKFSYRGGMTEEKKMVRRKALA 225

Query: 227 KWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELG 286
           KWLKESILRLGPTFIKIGQQFSTRVDILAQEYVD+LSELQDQVPPFPSETAVSIVEEELG
Sbjct: 226 KWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDQLSELQDQVPPFPSETAVSIVEEELG 285

Query: 287 APLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYL 346
           AP+ D+F+RFD EPIAAASLGQVHRARLKG+EVV+KVQRPGLKDLFDIDLKNLRVIAEYL
Sbjct: 286 APVGDIFDRFDYEPIAAASLGQVHRARLKGQEVVIKVQRPGLKDLFDIDLKNLRVIAEYL 345

Query: 347 QKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY 406
           QK+DPKSDGAKRDWVAIYDECA+VLYQEIDYT EA+NAELFASNFK+M+YVKVP I+WEY
Sbjct: 346 QKVDPKSDGAKRDWVAIYDECANVLYQEIDYTMEASNAELFASNFKEMEYVKVPAIYWEY 405

Query: 407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIA 466
           TTPQ+LTMEYVPGIKIN+IQ+LD+LGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIA
Sbjct: 406 TTPQVLTMEYVPGIKINKIQALDQLGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIA 465

Query: 467 VDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT 526
           VDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKD DKVL+AM+QMGVLVPTGD T
Sbjct: 466 VDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDPDKVLEAMIQMGVLVPTGDMT 525

Query: 527 AVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAI 586
           AVRRTA FFLNSFEERLAAQR+E EI T + GFKKPLSK+EKIEKKKQRLAAIGEDLL+I
Sbjct: 526 AVRRTALFFLNSFEERLAAQRREGEIETAQPGFKKPLSKDEKIEKKKQRLAAIGEDLLSI 585

Query: 587 AADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKD 646
           AADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA+ELLKFREAGVEV+LKD
Sbjct: 586 AADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLKFREAGVEVLLKD 645

Query: 647 FRNRWDRQTRAFYNLFRQADRVEKLAETIQRL-QGDLKLRVRTLESERAFQRVAAVQKTV 705
           FR RWDRQ+RA YNLFRQADRV+KLA+TIQRL QGDLKLRVRTLE+ERAFQRVAAVQK V
Sbjct: 646 FRKRWDRQSRAIYNLFRQADRVQKLADTIQRLEQGDLKLRVRTLEAERAFQRVAAVQKIV 705

Query: 706 GSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 765
           GSAV  GSLVNLATILYLNSIRVPAI A + CAFF FQVLFG+IKVKKLDQ+E+LITGTA
Sbjct: 706 GSAVAVGSLVNLATILYLNSIRVPAIAASIFCAFFSFQVLFGLIKVKKLDQQERLITGTA 765

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516279|ref|XP_003526823.1| PREDICTED: uncharacterized protein sll1770-like [Glycine max]

 Score = 1194 bits (3088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 605/765 (79%), Positives = 669/765 (87%), Gaps = 16/765 (2%)

Query: 4   CSCSSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGS 63
            + SS L LPEL FLSP+   +  +S SK      +    +   N+  R       ++ S
Sbjct: 1   MATSSPLPLPELHFLSPQTTPKRRISFSKLP-SSPYSVSRHVTSNVSLRTSRIRATREES 59

Query: 64  VVVEEKREPEFIKGLNDFE--VNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGG 121
            + E          LND E   NG  +A+   +  SV G VNG  NGSLVKY   NGNG 
Sbjct: 60  ALAER---------LNDVEWTGNGAAAAAADGNGASVGGYVNGATNGSLVKYGYENGNG- 109

Query: 122 VAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYS 181
           V+ EV+ +VE   KL+++  RKK++EEIGKEDAWFK+SG E+VEV+VAPGGRW+RFKTYS
Sbjct: 110 VSAEVL-EVEASNKLSED-GRKKRLEEIGKEDAWFKQSGNEQVEVAVAPGGRWNRFKTYS 167

Query: 182 TIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFI 241
           TIQRT EIWGF  TF+F+AWLNNQKFSY+GGMTEEK+ LRRK LAKWLKE+ILRLGPTFI
Sbjct: 168 TIQRTFEIWGFFATFIFKAWLNNQKFSYKGGMTEEKQTLRRKVLAKWLKENILRLGPTFI 227

Query: 242 KIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPI 301
           KIGQQFSTRVDIL QEYVD+LSELQDQVPPFPSET+V+IVEEELGAPL D+F++FD EPI
Sbjct: 228 KIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETSVAIVEEELGAPLGDIFDQFDYEPI 287

Query: 302 AAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV 361
           AAASLGQVHRARL G+EVV+KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV
Sbjct: 288 AAASLGQVHRARLNGQEVVIKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV 347

Query: 362 AIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIK 421
           AIYDECASVLYQEIDYT+EAANAELFASNFK+MDYVKVPTI+W+YTTPQILTMEYVPGIK
Sbjct: 348 AIYDECASVLYQEIDYTKEAANAELFASNFKNMDYVKVPTIYWDYTTPQILTMEYVPGIK 407

Query: 422 INRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG 481
           IN+IQ+LD+LGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG
Sbjct: 408 INKIQALDQLGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG 467

Query: 482 MMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEE 541
           MMGSISPNIREGLLE FYG+YEKD DKVLQAM+QMGVLVPTGD TAVRRTAQFFLNSFEE
Sbjct: 468 MMGSISPNIREGLLETFYGVYEKDPDKVLQAMIQMGVLVPTGDMTAVRRTAQFFLNSFEE 527

Query: 542 RLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFV 601
           RLAAQR+ERE  T ELGFKKPLSKEEKI+KKKQRLAAIGEDLL+IAADQPFRFPATFTFV
Sbjct: 528 RLAAQRQEREEATTELGFKKPLSKEEKIKKKKQRLAAIGEDLLSIAADQPFRFPATFTFV 587

Query: 602 VRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNL 661
           VRAFSVLDGIGKGLDPRFDITEIAKPYA+ELL+FREAGVEV+LKDFR RWDRQ++AFYNL
Sbjct: 588 VRAFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVVLKDFRKRWDRQSQAFYNL 647

Query: 662 FRQADRVEKLAETIQRL-QGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATI 720
           FRQADRV+KLA+ IQRL QGDLKLRVRTLESERAFQRVAAVQKT+GSAV AGSL+NLAT+
Sbjct: 648 FRQADRVDKLADIIQRLEQGDLKLRVRTLESERAFQRVAAVQKTIGSAVAAGSLINLATV 707

Query: 721 LYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 765
           LYLNSIRVPAI AY+ CA FGFQVL GI+KVKKLD+RE+LITGTA
Sbjct: 708 LYLNSIRVPAIAAYIFCALFGFQVLLGIVKVKKLDERERLITGTA 752

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525527|ref|XP_003531376.1| PREDICTED: uncharacterized protein sll1770-like [Glycine max]

 Score = 1191 bits (3080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/763 (77%), Positives = 665/763 (87%), Gaps = 27/763 (3%)

Query: 14  ELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPE 73
           E +FL+P+   +   SLS      S    +  R N+  R R+ A  ++G+V         
Sbjct: 11  EFKFLAPQITPKRRRSLSSFCSRHSVSLNS--RYNVALRTRIRAVMEEGAV--------- 59

Query: 74  FIKGLNDFEVNGNG-SASRSDSVGSVNGGVNGY--------ANGSLVKYVNGNGNGGVAV 124
            I  +ND + +GNG +AS     GSVNG VNG         ANG LVKYVNGNG   VA 
Sbjct: 60  -IDRVNDVKWSGNGVAASEYGGNGSVNGYVNGVSGVMESEDANGRLVKYVNGNG---VAA 115

Query: 125 EVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKK-SGQEKVEVSVAPGGRWSRFKTYSTI 183
           EVV    E  K  KE  RKK++EEIGKEDAWFKK +G+  +EV+VAPGGRWSRFKTYS I
Sbjct: 116 EVVEDFAESLK-RKEDGRKKRLEEIGKEDAWFKKQTGEAPIEVAVAPGGRWSRFKTYSMI 174

Query: 184 QRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKI 243
           QRTLEIWGFV+TF+F++WLNN+KFSY+GGMTEEKK+LRRKALAKWLKESILRLGPTFIK+
Sbjct: 175 QRTLEIWGFVITFIFKSWLNNRKFSYKGGMTEEKKILRRKALAKWLKESILRLGPTFIKV 234

Query: 244 GQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAA 303
           GQQFSTRVDIL QEYVD+LSELQDQVPPFPSETAV+IVEEELG+PL  VF+ F+ EPIAA
Sbjct: 235 GQQFSTRVDILPQEYVDQLSELQDQVPPFPSETAVAIVEEELGSPLASVFDHFEYEPIAA 294

Query: 304 ASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAI 363
           ASLGQVHRARL+G+EVVVKVQRPGLK LFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAI
Sbjct: 295 ASLGQVHRARLRGQEVVVKVQRPGLKALFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAI 354

Query: 364 YDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKIN 423
           YDECASVLYQEIDYT+EAANAELFASNF+++DYVKVPTI W+YTTPQILTMEYVPGIKIN
Sbjct: 355 YDECASVLYQEIDYTKEAANAELFASNFENLDYVKVPTIIWDYTTPQILTMEYVPGIKIN 414

Query: 424 RIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM 483
           +IQ+LD LG+DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM
Sbjct: 415 KIQALDRLGLDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM 474

Query: 484 GSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERL 543
           GSIS NIREGLLEAFYGIYEK+ DKVLQ+M+QMGVLVPTGD TAV+RTAQFFLNSFEERL
Sbjct: 475 GSISQNIREGLLEAFYGIYEKNPDKVLQSMIQMGVLVPTGDMTAVKRTAQFFLNSFEERL 534

Query: 544 AAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVR 603
           AAQR+ERE+ T ELGFK+PLSKEE++ KKK+RLAAIGEDLLAIAADQPFRFPATFTFVVR
Sbjct: 535 AAQRREREMETAELGFKQPLSKEEQVMKKKERLAAIGEDLLAIAADQPFRFPATFTFVVR 594

Query: 604 AFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFR 663
           AFSVLDGIGKGLDPRFDITEIAKPYA+ELL+FREAGVEVILKD R RWDRQ++AFYNLFR
Sbjct: 595 AFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVILKDLRKRWDRQSQAFYNLFR 654

Query: 664 QADRVEKLAETIQRL-QGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILY 722
           QADRVEKLAE I+RL QGDLKLRVRTLESERAFQR+A VQ+T+G+A+ AGSL+NLATIL+
Sbjct: 655 QADRVEKLAEIIERLEQGDLKLRVRTLESERAFQRIATVQRTIGNAIAAGSLINLATILF 714

Query: 723 LNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 765
           LNSIRVPA +AYV CA FGFQVLFGI+K+KKLD+RE+LITGTA
Sbjct: 715 LNSIRVPATIAYVFCAIFGFQVLFGIVKIKKLDERERLITGTA 757

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516721|ref|XP_004165395.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein sll1770-like [Cucumis sativus]

 Score = 1189 bits (3075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/770 (77%), Positives = 673/770 (87%), Gaps = 21/770 (2%)

Query: 7   SSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVV 66
           ++SL LPEL F+SPK   R   S S         +    R  + RR ++ A ++DG  VV
Sbjct: 2   ATSLPLPELVFVSPK---RLFSSSSPGCFLYRVPFSRTCRFRVLRRTKLRAVREDG--VV 56

Query: 67  EEKREPEFIKGLNDFEVNGNGSASRSDS----VGSVNGGVN------GYANGSLVKYVNG 116
            E+RE E IK +N + +  NG+A   +      G VNGGV       G  NG+LVKYVNG
Sbjct: 57  AEERENELIKEVNGYGLGSNGAAYNGNGDYRYNGWVNGGVTTVESETGGTNGNLVKYVNG 116

Query: 117 NGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSR 176
           NG   VA  VVG+++  E +  E +RKK++EEIGKE+AWFK+S Q++VEVSVAPGGRW+R
Sbjct: 117 NG---VAAAVVGEIQASESV--EEDRKKRIEEIGKEEAWFKRSDQQQVEVSVAPGGRWNR 171

Query: 177 FKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRL 236
           FKTYSTIQRTLEIWGFV +FV +AWLNNQKF+YRGGMTEEKKV RRK +AKWLKESILRL
Sbjct: 172 FKTYSTIQRTLEIWGFVFSFVLKAWLNNQKFTYRGGMTEEKKVARRKIVAKWLKESILRL 231

Query: 237 GPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERF 296
           GPTFIKIGQQFSTRVDIL QEYVD+LSELQDQVPPFPSETAVSIVEEELG P+  +F+RF
Sbjct: 232 GPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETAVSIVEEELGGPVAGIFDRF 291

Query: 297 DVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGA 356
           D EPIAAASLGQVHRARLKG+EVVVKVQRP LK+LFDIDLKNLRVIAEYLQK+DPKSDGA
Sbjct: 292 DREPIAAASLGQVHRARLKGQEVVVKVQRPSLKELFDIDLKNLRVIAEYLQKLDPKSDGA 351

Query: 357 KRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEY 416
           KRDWVAIYDECA+VLYQEIDYT+EAANAELFA+NFK++DYVKVP+IFW+YTTPQ+LTMEY
Sbjct: 352 KRDWVAIYDECANVLYQEIDYTKEAANAELFATNFKNLDYVKVPSIFWDYTTPQVLTMEY 411

Query: 417 VPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI 476
           VPGIKIN+I++LD+LG+DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI
Sbjct: 412 VPGIKINKIKALDQLGLDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI 471

Query: 477 FYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL 536
           FYDFGMMGSIS NIREGLLE FYG+YEKD DKVLQAM+QMGVLVPTGD TAVRRTAQFFL
Sbjct: 472 FYDFGMMGSISSNIREGLLETFYGVYEKDPDKVLQAMIQMGVLVPTGDMTAVRRTAQFFL 531

Query: 537 NSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPA 596
           NSFEERLAAQR+ERE+ T ELGFKKPL+KEEK+  KK+RLAAIGEDLLAIAADQPFRFPA
Sbjct: 532 NSFEERLAAQRREREMATAELGFKKPLTKEEKLMXKKERLAAIGEDLLAIAADQPFRFPA 591

Query: 597 TFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTR 656
           TFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA+ELLKFREAGVEV LKDFR RWDRQ+R
Sbjct: 592 TFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLKFREAGVEVALKDFRKRWDRQSR 651

Query: 657 AFYNLFRQADRVEKLAETIQRL-QGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLV 715
           AFYNLFRQA+RVEKLAE IQRL QGDLKLRVR LESER+FQRVA VQKT+G+A+ AGSL+
Sbjct: 652 AFYNLFRQAERVEKLAEIIQRLEQGDLKLRVRALESERSFQRVATVQKTLGNAIAAGSLI 711

Query: 716 NLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 765
           NLATIL++NSIR+PA +AY+ CAFFGFQVL G+IKVK+LD+RE+LITGTA
Sbjct: 712 NLATILHINSIRMPATIAYIFCAFFGFQVLIGLIKVKRLDERERLITGTA 761

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451493|ref|XP_004143496.1| PREDICTED: uncharacterized protein sll1770-like [Cucumis sativus]

 Score = 1189 bits (3075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/770 (77%), Positives = 674/770 (87%), Gaps = 21/770 (2%)

Query: 7   SSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVV 66
           ++SL LPEL F+SPK   R   S S         +    R  + RR ++ A ++DG  VV
Sbjct: 2   ATSLPLPELVFVSPK---RLFSSSSPGCFLYRVPFSRTCRFRVLRRTKLRAVREDG--VV 56

Query: 67  EEKREPEFIKGLNDFEVNGNGSASRSDS----VGSVNGGVN------GYANGSLVKYVNG 116
            E+RE E IK +N + +  NG+A   +      G VNGGV       G  NG+LVKYVNG
Sbjct: 57  AEERENELIKEVNGYGLGSNGAAYNGNGDYRYNGWVNGGVTTVESETGGTNGNLVKYVNG 116

Query: 117 NGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSR 176
           NG   VA  VVG+++  E +  E +RKK++EEIGKE+AWFK+S Q++VEVSVAPGGRW+R
Sbjct: 117 NG---VAAAVVGEIQASESV--EEDRKKRIEEIGKEEAWFKRSDQQQVEVSVAPGGRWNR 171

Query: 177 FKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRL 236
           FKTYSTIQRTLEIWGFV +FV +AWLNNQKF+YRGGMTEEKKV RRK +AKWLKESILRL
Sbjct: 172 FKTYSTIQRTLEIWGFVFSFVLKAWLNNQKFTYRGGMTEEKKVARRKIVAKWLKESILRL 231

Query: 237 GPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERF 296
           GPTFIKIGQQFSTRVDIL QEYVD+LSELQDQVPPFPSETAVSIVEEELG P+  +F+RF
Sbjct: 232 GPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETAVSIVEEELGGPVAGIFDRF 291

Query: 297 DVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGA 356
           D EPIAAASLGQVHRARLKG+EVVVKVQRP LK+LFDIDLKNLRVIAEYLQK+DPKSDGA
Sbjct: 292 DREPIAAASLGQVHRARLKGQEVVVKVQRPSLKELFDIDLKNLRVIAEYLQKLDPKSDGA 351

Query: 357 KRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEY 416
           KRDWVAIYDECA+VLYQEIDYT+EAANAELFA+NFK++DYVKVP+IFW+YTTPQ+LTMEY
Sbjct: 352 KRDWVAIYDECANVLYQEIDYTKEAANAELFATNFKNLDYVKVPSIFWDYTTPQVLTMEY 411

Query: 417 VPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI 476
           VPGIKIN+I++LD+LG+DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI
Sbjct: 412 VPGIKINKIKALDQLGLDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI 471

Query: 477 FYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL 536
           FYDFGMMGSIS NIREGLLE FYG+YEKD DKVLQAM+QMGVLVPTGD TAVRRTAQFFL
Sbjct: 472 FYDFGMMGSISSNIREGLLETFYGVYEKDPDKVLQAMIQMGVLVPTGDMTAVRRTAQFFL 531

Query: 537 NSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPA 596
           NSFEERLAAQR+ERE+ T ELGFKKPL+KEEK+ KKK+RLAAIGEDLLAIAADQPFRFPA
Sbjct: 532 NSFEERLAAQRREREMATAELGFKKPLTKEEKLMKKKERLAAIGEDLLAIAADQPFRFPA 591

Query: 597 TFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTR 656
           TFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA+ELLKFREAGVEV LKDFR RWDRQ+R
Sbjct: 592 TFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLKFREAGVEVALKDFRKRWDRQSR 651

Query: 657 AFYNLFRQADRVEKLAETIQRL-QGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLV 715
           AFYNLFRQA+RVEKLAE IQRL QGDLKLRVR LESER+FQRVA VQKT+G+A+ AGSL+
Sbjct: 652 AFYNLFRQAERVEKLAEIIQRLEQGDLKLRVRALESERSFQRVATVQKTLGNAIAAGSLI 711

Query: 716 NLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 765
           NLATIL++NSIR+PA +AY+ CAFFGFQVL G+IKVK+LD+RE+LITGTA
Sbjct: 712 NLATILHINSIRMPATIAYIFCAFFGFQVLIGLIKVKRLDERERLITGTA 761

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512736|ref|XP_003525072.1| PREDICTED: uncharacterized protein sll1770-like [Glycine max]

 Score = 1186 bits (3068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/766 (78%), Positives = 675/766 (88%), Gaps = 34/766 (4%)

Query: 14  ELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPE 73
           EL+FL+P+   +   SLS+      F  +N  R N+  R R+ A K++G+V         
Sbjct: 11  ELKFLAPQITPKRRRSLSR------FCSQN-SRYNVALRTRIRAFKEEGAV--------- 54

Query: 74  FIKGLNDFEVNGNG-SASRSDSVGSVNGGVNGY--------ANGSLVKYVNGNGNG-GVA 123
            I  +ND + +GNG +AS   + GSVNG  NG         ANGSLVKYVN NGNG GVA
Sbjct: 55  -IDRVNDVKWSGNGVAASEYGANGSVNGYANGVSGVRESENANGSLVKYVNDNGNGNGVA 113

Query: 124 VEVVGQVEEEEKLNKEIE--RKKKVEEIGKEDAWFKK-SGQEKVEVSVAPGGRWSRFKTY 180
            EVV   E+  + +K +E  RKK++EEIGKE+AWFKK +G+  +EV+VAPGGRWSRFKTY
Sbjct: 114 AEVV---EDSAEASKRMEDGRKKRLEEIGKEEAWFKKQTGEAPIEVAVAPGGRWSRFKTY 170

Query: 181 STIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTF 240
           S IQRTLEIWGFV+TF+F++WLNN+KFSY+GGMTEEKK  RRKALAKWLKESILRLGPTF
Sbjct: 171 SMIQRTLEIWGFVITFIFKSWLNNRKFSYKGGMTEEKKTSRRKALAKWLKESILRLGPTF 230

Query: 241 IKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEP 300
           IK+GQQFSTRVDIL QEYVD+LSELQDQVPPFPSETA++IVEEELG+PL  VF+ F+ EP
Sbjct: 231 IKVGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETAIAIVEEELGSPLAGVFDHFEYEP 290

Query: 301 IAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDW 360
           IAAASLGQVHRARL+G+EVVVKVQRPGLK LFDIDLKNLR+IAEYLQKIDPKSDGAKRDW
Sbjct: 291 IAAASLGQVHRARLRGQEVVVKVQRPGLKALFDIDLKNLRIIAEYLQKIDPKSDGAKRDW 350

Query: 361 VAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGI 420
           VAIYDECASVLYQEIDYT+EAANAELFASNFK++DYVKVPTI W+YTTPQILTMEYVPGI
Sbjct: 351 VAIYDECASVLYQEIDYTKEAANAELFASNFKNLDYVKVPTIIWDYTTPQILTMEYVPGI 410

Query: 421 KINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDF 480
           KIN+IQ+LD+LG+DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDF
Sbjct: 411 KINKIQALDQLGLDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDF 470

Query: 481 GMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFE 540
           GMMGSIS NIREGLLEAFYGIYEK+ DKVLQ+M+QMGVLVPTGD TAV+RTAQFFLNSFE
Sbjct: 471 GMMGSISQNIREGLLEAFYGIYEKNPDKVLQSMIQMGVLVPTGDMTAVKRTAQFFLNSFE 530

Query: 541 ERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTF 600
           ERLAAQR+ERE+ T ELGFK+PLSKEEK+ KKK+RLAAIGEDLLAIAADQPFRFPATFTF
Sbjct: 531 ERLAAQRREREMATAELGFKQPLSKEEKVMKKKERLAAIGEDLLAIAADQPFRFPATFTF 590

Query: 601 VVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYN 660
           VVRAFSVLDGIGKGLDPRFDITEIAKPYA+ELL+FREAGVEVILKDFR RWDRQ++AFYN
Sbjct: 591 VVRAFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVILKDFRKRWDRQSQAFYN 650

Query: 661 LFRQADRVEKLAETIQRL-QGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLAT 719
           LFRQADRVEKLAE IQRL QGDLKLRVRTLESERAFQR+A VQKT+G+A+ +GSL+NLAT
Sbjct: 651 LFRQADRVEKLAEIIQRLEQGDLKLRVRTLESERAFQRIATVQKTIGNAIASGSLINLAT 710

Query: 720 ILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 765
           ILYLNSIRVPA +AYV CA FGFQVLFGI+K+KKLD+RE+LITGTA
Sbjct: 711 ILYLNSIRVPATIAYVFCAIFGFQVLFGIVKIKKLDERERLITGTA 756

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519623|ref|XP_003630100.1| ABC transporter-like protein [Medicago truncatula] gi|355524122|gb|AET04576.1| ABC transporter-like protein [Medicago truncatula]

 Score = 1183 bits (3060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 589/753 (78%), Positives = 661/753 (87%), Gaps = 29/753 (3%)

Query: 14  ELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGSVVVEEKREPE 73
           EL FL+P+   +   S S+              C L  +IR  A K++G++V E      
Sbjct: 11  ELNFLAPQFTPKRRRSNSR-------------FCILPTQIR--ALKEEGALVEE------ 49

Query: 74  FIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGGVAVEVVGQVEEE 133
             + ++D + +GNG+   + S GSV G VNG  NGSLVKYVNGNG   VAVEVV    E 
Sbjct: 50  --RIVSDVKWSGNGTVV-NGSNGSVRGYVNGGGNGSLVKYVNGNG---VAVEVVEDFVET 103

Query: 134 EKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFV 193
            K  KE+ RKK++EEIGKEDAWFK++G+ +VEV+VAPGGRWSRFKTYSTIQRTLEIWGFV
Sbjct: 104 SK-RKEVGRKKRLEEIGKEDAWFKQNGEPQVEVAVAPGGRWSRFKTYSTIQRTLEIWGFV 162

Query: 194 LTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDI 253
           + F+F++WLN QKFSY+GGMTEEKK LRRK LAKWLKESILRLGPTFIKIGQQFSTRVDI
Sbjct: 163 IQFIFKSWLNRQKFSYKGGMTEEKKTLRRKTLAKWLKESILRLGPTFIKIGQQFSTRVDI 222

Query: 254 LAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRAR 313
           L QEYVD+LSELQDQVPPFPSETA++IVEEELGAP+  +F++FD EPIAAASLGQVHRAR
Sbjct: 223 LPQEYVDQLSELQDQVPPFPSETAMAIVEEELGAPIAGIFDQFDYEPIAAASLGQVHRAR 282

Query: 314 LKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ 373
           L+G+EVV+KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ
Sbjct: 283 LRGQEVVIKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ 342

Query: 374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGV 433
           EIDYT+EAANAELFASNFK+MDYVKVP+I+W+YTTPQILTMEYVPGIKIN+IQ+LD+LGV
Sbjct: 343 EIDYTKEAANAELFASNFKNMDYVKVPSIYWDYTTPQILTMEYVPGIKINKIQALDQLGV 402

Query: 434 DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG 493
           DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS NIREG
Sbjct: 403 DRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISQNIREG 462

Query: 494 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREIT 553
           LLEAFYG+YEK  DKVL AM+QMGVLVPTGD TAVRRTAQFFLNSFEERLAAQR+E+E+ 
Sbjct: 463 LLEAFYGVYEKSPDKVLDAMIQMGVLVPTGDMTAVRRTAQFFLNSFEERLAAQRREKEME 522

Query: 554 TQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGK 613
             E+GFKKPLSKEE++ KKK+RLAAIGEDLL+IAADQPFRFPATFTFVVRAFSVLDGIGK
Sbjct: 523 AAEVGFKKPLSKEEQVMKKKERLAAIGEDLLSIAADQPFRFPATFTFVVRAFSVLDGIGK 582

Query: 614 GLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAE 673
           GLDPRFDITEIAKPYA+ELLKFREAGVEVI+KD + RWDRQ++AFYNLFRQADRVEKLA 
Sbjct: 583 GLDPRFDITEIAKPYALELLKFREAGVEVIIKDIKKRWDRQSQAFYNLFRQADRVEKLAN 642

Query: 674 TIQRL-QGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAIL 732
            I+RL QGDLKLRVR LESERAFQR+A VQKT+G+AVGAGSL+NLATIL LNSIRVPA +
Sbjct: 643 VIERLEQGDLKLRVRALESERAFQRIATVQKTIGNAVGAGSLINLATILSLNSIRVPATI 702

Query: 733 AYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 765
           AY  CA FGFQVL GI+K+KKLD+RE+LITGTA
Sbjct: 703 AYFFCAIFGFQVLLGIVKIKKLDERERLITGTA 735

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509050|ref|XP_003523265.1| PREDICTED: uncharacterized protein sll1770-like [Glycine max]

 Score = 1170 bits (3027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 602/765 (78%), Positives = 668/765 (87%), Gaps = 19/765 (2%)

Query: 4   CSCSSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQDGS 63
            + SS L LPEL FLSP+   +  +SLSK       +  N       R  R+ A +++ +
Sbjct: 1   MAASSPLPLPELHFLSPQITPKRRISLSKLPSISRHVTSNVSL----RTARIRASREESA 56

Query: 64  VVVEEKREPEFIKGLNDFE--VNGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGG 121
           +             +ND E   NG  +A+ + +  SV+G VNG  NGSLVKY   +GN  
Sbjct: 57  LA----------DRVNDVEWTGNGAAAAASNANGASVSGYVNGATNGSLVKYGYEDGNDV 106

Query: 122 VAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYS 181
            A EVV +VE   KL+++  RKK++EEIGKEDAWFK++G E+VE  +APGGRW+RFKTYS
Sbjct: 107 AAAEVV-EVEASNKLSED-GRKKRLEEIGKEDAWFKQTGNEQVEGRLAPGGRWNRFKTYS 164

Query: 182 TIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFI 241
           TIQRT EIWGFV TF+F+AWLNNQKFSY+GGMTEEKK LRRKALAKWLKE+ILRLGPTFI
Sbjct: 165 TIQRTFEIWGFVATFIFKAWLNNQKFSYKGGMTEEKKTLRRKALAKWLKENILRLGPTFI 224

Query: 242 KIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPI 301
           KIGQQFSTRVDIL QEYVD+LSELQDQVPPFPSET+V+IVEEELGAPL D+F++FD EPI
Sbjct: 225 KIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETSVAIVEEELGAPLGDIFDQFDYEPI 284

Query: 302 AAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV 361
           AAASLGQVHRA LKG+EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV
Sbjct: 285 AAASLGQVHRATLKGQEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV 344

Query: 362 AIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIK 421
           AIYDECASVLYQEIDYT+EAANAELFASNFK+MDYVKVPTI+W+YTTPQILTMEYVPGIK
Sbjct: 345 AIYDECASVLYQEIDYTKEAANAELFASNFKNMDYVKVPTIYWDYTTPQILTMEYVPGIK 404

Query: 422 INRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG 481
           IN+IQ+LD+LGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG
Sbjct: 405 INKIQALDQLGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG 464

Query: 482 MMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEE 541
           MMGSISPNIREGLLE FYG+YEKD DKVLQAM+QMGVLVPTGD TAVRRTAQFFLNSFEE
Sbjct: 465 MMGSISPNIREGLLETFYGVYEKDPDKVLQAMIQMGVLVPTGDMTAVRRTAQFFLNSFEE 524

Query: 542 RLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFV 601
           RLAAQR+ERE  T ELGFKKPLSKEEKI+KKKQRLAAIGEDLL+IAADQPFRFPATFTFV
Sbjct: 525 RLAAQRREREEATTELGFKKPLSKEEKIKKKKQRLAAIGEDLLSIAADQPFRFPATFTFV 584

Query: 602 VRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNL 661
           VRAFSVLDGIGKGLDPRFDITEIAKPYA+ELL+FREAGVEV+LKDFR RWDRQ++AFYNL
Sbjct: 585 VRAFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVVLKDFRKRWDRQSQAFYNL 644

Query: 662 FRQADRVEKLAETIQRL-QGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATI 720
            RQADRV+KLA  IQRL QGDLKLRVRTLESERAFQRVAAVQKT+G+AV AGSL+NLAT+
Sbjct: 645 IRQADRVDKLANIIQRLEQGDLKLRVRTLESERAFQRVAAVQKTIGNAVAAGSLINLATV 704

Query: 721 LYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 765
           LYLNSIRVPAI AY+ CA FGFQVL GI+KVKKLD+RE+LITG A
Sbjct: 705 LYLNSIRVPAIAAYIFCAIFGFQVLLGIVKVKKLDERERLITGIA 749

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083787|ref|XP_002307123.1| predicted protein [Populus trichocarpa] gi|222856572|gb|EEE94119.1| predicted protein [Populus trichocarpa]

 Score = 1148 bits (2969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/625 (90%), Positives = 605/625 (96%), Gaps = 2/625 (0%)

Query: 142 RKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAW 201
           RKK++EEIGKE+AWFK++GQ+ VEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTF+F+AW
Sbjct: 4   RKKRIEEIGKEEAWFKRAGQQ-VEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFIFKAW 62

Query: 202 LNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDE 261
           LN+QKFSYRGGMT+EKKV RRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVD+
Sbjct: 63  LNSQKFSYRGGMTKEKKVARRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDQ 122

Query: 262 LSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVV 321
           LSELQDQVPPFPSETAVSIVEEELGAP+DD+F++FD EPIAAASLGQVHRARLKG+EVV+
Sbjct: 123 LSELQDQVPPFPSETAVSIVEEELGAPVDDIFDQFDYEPIAAASLGQVHRARLKGQEVVI 182

Query: 322 KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEA 381
           KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT+EA
Sbjct: 183 KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTKEA 242

Query: 382 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY 441
           ANAELFASNFK M+YVKVPTI WEYTTPQILTMEYVPGIKIN+IQ+LD+LGVDRKRLGRY
Sbjct: 243 ANAELFASNFKKMEYVKVPTINWEYTTPQILTMEYVPGIKINKIQALDQLGVDRKRLGRY 302

Query: 442 AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGI 501
            VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE FYG+
Sbjct: 303 VVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLETFYGV 362

Query: 502 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 561
           YEKD DKVL+AMVQMGVLVPTGD TAVRRTAQFFLNSFEERLAAQR+ERE+ T ELGFKK
Sbjct: 363 YEKDPDKVLEAMVQMGVLVPTGDMTAVRRTAQFFLNSFEERLAAQRREREMATTELGFKK 422

Query: 562 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 621
            L+KEEK+EKKKQRLAAIGEDLL+IAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI
Sbjct: 423 QLTKEEKMEKKKQRLAAIGEDLLSIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 482

Query: 622 TEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRL-QG 680
           TEIAKPYA+ELL+FREAGVEV+LKDFR RWDRQ+RAF+NLFRQADRV+KLAETIQRL QG
Sbjct: 483 TEIAKPYALELLRFREAGVEVLLKDFRKRWDRQSRAFHNLFRQADRVQKLAETIQRLEQG 542

Query: 681 DLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFF 740
           DLKLRVRTLE+ERAFQRVAAVQKTVGSAV AGSL+NLATIL+LNSIRVPA  A + CAFF
Sbjct: 543 DLKLRVRTLEAERAFQRVAAVQKTVGSAVAAGSLINLATILFLNSIRVPATAASILCAFF 602

Query: 741 GFQVLFGIIKVKKLDQREKLITGTA 765
            FQVLFGIIKVK+LDQ+E+LITGTA
Sbjct: 603 SFQVLFGIIKVKRLDQQERLITGTA 627

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794095|ref|XP_002864932.1| hypothetical protein ARALYDRAFT_919821 [Arabidopsis lyrata subsp. lyrata] gi|297310767|gb|EFH41191.1| hypothetical protein ARALYDRAFT_919821 [Arabidopsis lyrata subsp. lyrata]

 Score = 1133 bits (2930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/772 (77%), Positives = 663/772 (85%), Gaps = 24/772 (3%)

Query: 1   MASCSCSSSLALPELRFLSPKAASRYHLSLSKQSLYRSFLYKNYPRCNLGRRIRVAAGKQ 60
           MA+ S SSSL LP + F      SR   +++   L R+ L  N+   NL  R R+    +
Sbjct: 1   MATSSSSSSLLLPNINF-----NSRQSTTVAGIFLPRNRLSYNH---NLQLRTRIIRASK 52

Query: 61  DGSVVVEEKREPEFIKGLND--FEVNGNGSASRSDSVGSVNGG--VNGYANGSLVKYVNG 116
           D +V VE++         N+    +NGNGSA +S + G  NG   +NG  NGSLVKYVNG
Sbjct: 53  DDNVAVEDRGNAVINGDYNNGSARLNGNGSARKSVN-GDYNGSARLNGNGNGSLVKYVNG 111

Query: 117 NGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSR 176
           +        V  + EE  K  KE  RKK+VE+IG+EDAWFK + Q++VEVSVAPGGRW+R
Sbjct: 112 S--------VTVETEEVTKKRKEEVRKKRVEDIGQEDAWFKNTQQKQVEVSVAPGGRWNR 163

Query: 177 FKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRL 236
           FKTYSTIQRTLEIWGFV+ F+FR WL+NQKFSY+GGMTEEKKVLRRK LAKWLKE+ILRL
Sbjct: 164 FKTYSTIQRTLEIWGFVVQFIFRTWLSNQKFSYKGGMTEEKKVLRRKILAKWLKENILRL 223

Query: 237 GPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERF 296
           GPTFIKIGQQFSTRVDIL QEYVD+LSELQDQVPPFPS TA+SIVEEELG  ++D+F+RF
Sbjct: 224 GPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSATALSIVEEELGGSVEDIFDRF 283

Query: 297 DVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGA 356
           D EPIAAASLGQVHRARLKG+EVV+KVQRPGLKDLFDIDLKNLRVIAEYLQK+DPKSDGA
Sbjct: 284 DYEPIAAASLGQVHRARLKGQEVVLKVQRPGLKDLFDIDLKNLRVIAEYLQKVDPKSDGA 343

Query: 357 KRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEY 416
           KRDWVAIYDECASVLYQEIDYT+EAAN+ELFA+NFK+++YVKVP+I+WEYTTPQ+LTMEY
Sbjct: 344 KRDWVAIYDECASVLYQEIDYTKEAANSELFANNFKNLEYVKVPSIYWEYTTPQVLTMEY 403

Query: 417 VPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI 476
           VPGIKIN+IQ+LD+LGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI
Sbjct: 404 VPGIKINKIQALDQLGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLI 463

Query: 477 FYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL 536
           FYDFGMMGSISPNIREGLLEAFYG+YEKD DKVLQAMVQMGVLVPTGD TAVRRTA FFL
Sbjct: 464 FYDFGMMGSISPNIREGLLEAFYGVYEKDPDKVLQAMVQMGVLVPTGDLTAVRRTALFFL 523

Query: 537 NSFEERLAAQR--KEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRF 594
           NSFEERLAAQR  KE     +ELGFKKPLSKEEK EKKKQRLAAIGEDLLAIAADQPFRF
Sbjct: 524 NSFEERLAAQRKEKEEIAAAEELGFKKPLSKEEKQEKKKQRLAAIGEDLLAIAADQPFRF 583

Query: 595 PATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQ 654
           PATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA+ELL+FREAGVEV++KD R RWDRQ
Sbjct: 584 PATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVVVKDLRKRWDRQ 643

Query: 655 TRAFYNLFRQADRVEKLAETIQRL-QGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGS 713
           ++AFYNLFRQADRVEKLA  I+RL QGDLKLRVR LESERAFQRVAAVQKTVGSAV AGS
Sbjct: 644 SQAFYNLFRQADRVEKLAVVIERLEQGDLKLRVRALESERAFQRVAAVQKTVGSAVAAGS 703

Query: 714 LVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGIIKVKKLDQREKLITGTA 765
           LVNLATILYLNS++ PA +AY  CAFF  QVL G+IKVKK DQREKLITGTA
Sbjct: 704 LVNLATILYLNSLKTPATIAYTVCAFFSLQVLIGVIKVKKFDQREKLITGTA 755

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	765
TAIR|locus:2177719	761	ATH13 "AT5G64940" [Arabidopsis	0.801	0.805	0.875	1.2e-294
UNIPROTKB|Q3ACS7	541	CHY_1218 "ABC1 family protein"	0.424	0.600	0.405	6.8e-67
TIGR_CMR|CHY_1218	541	CHY_1218 "ABC1 family protein"	0.424	0.600	0.405	6.8e-67
TAIR|locus:2019838	711	AT1G79600 [Arabidopsis thalian	0.465	0.500	0.359	3.7e-66
UNIPROTKB|Q74E76	561	GSU1088 "Quinone biosynthesis	0.464	0.632	0.349	6.1e-66
TIGR_CMR|GSU_1088	561	GSU_1088 "ubiquinone biosynthe	0.464	0.632	0.349	6.1e-66
TAIR|locus:2128116	682	ACDO1 "ABC1-like kinase relate	0.513	0.576	0.347	2.6e-63
TAIR|locus:2013041	692	AT1G71810 [Arabidopsis thalian	0.405	0.447	0.392	3.3e-61
TAIR|locus:2093711	793	AT3G24190 [Arabidopsis thalian	0.384	0.370	0.387	6.4e-57
TIGR_CMR|SPO_0144	509	SPO_0144 "2-polyprenylphenol 6	0.383	0.575	0.367	1.4e-51

TAIR|locus:2177719 ATH13 "AT5G64940" [Arabidopsis thaliana (taxid:3702)]

 Score = 2793 (988.2 bits), Expect = 1.2e-294, Sum P(2) = 1.2e-294
 Identities = 540/617 (87%), Positives = 581/617 (94%)

Query:   153 DAWFKKSGQEK-VEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRG 211
             DAWFK + Q+K VEVSV PGGRW+RFKTYSTIQRTLEIWGFV+ F+FR WL+N+KFSY+G
Sbjct:   145 DAWFKNNTQQKQVEVSVTPGGRWNRFKTYSTIQRTLEIWGFVVQFIFRTWLSNKKFSYKG 204

Query:   212 GMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPP 271
             GMTEEKKVLRRK LAKWLKE+ILRLGPTFIKIGQQFSTRVDIL QEYVD+LSELQDQVPP
Sbjct:   205 GMTEEKKVLRRKVLAKWLKENILRLGPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPP 264

Query:   272 FPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDL 331
             FPS TA+SIVEEELG  ++D+F+RFD EPIAAASLGQVHRARLKG+EVV+KVQRPGLKDL
Sbjct:   265 FPSATALSIVEEELGGSVEDIFDRFDYEPIAAASLGQVHRARLKGQEVVLKVQRPGLKDL 324

Query:   332 FDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNF 391
             FDIDLKNLRVIAEYLQK+DPKSDGAKRDWVAIYDECASVLYQEIDYT+EAAN+ELFA+NF
Sbjct:   325 FDIDLKNLRVIAEYLQKVDPKSDGAKRDWVAIYDECASVLYQEIDYTKEAANSELFANNF 384

Query:   392 KDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL 451
             KD++YVKVP+I+WEYTTPQ+LTMEYVPGIKIN+IQ+LD+LGVDRKRLGRYAVESYLEQIL
Sbjct:   385 KDLEYVKVPSIYWEYTTPQVLTMEYVPGIKINKIQALDQLGVDRKRLGRYAVESYLEQIL 444

Query:   452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ 511
             SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYG+YEKD DKVLQ
Sbjct:   445 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGVYEKDPDKVLQ 504

Query:   512 AMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKERE--ITTQELGFKKPLSKEEKI 569
             AMVQMGVLVPTGD TAVRRTA FFLNSFEERLAAQRKE+E     +ELGFKKPLSKEEK 
Sbjct:   505 AMVQMGVLVPTGDLTAVRRTALFFLNSFEERLAAQRKEKEEIAAAEELGFKKPLSKEEKQ 564

Query:   570 EKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA 629
             EKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA
Sbjct:   565 EKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA 624

Query:   630 MELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRL-QGDLKLRVRT 688
             +ELL+FREAGVEV++KD R RWDRQ++AFYNLFRQADRVEKLA  I+RL QGDLKLRVR 
Sbjct:   625 LELLRFREAGVEVVVKDLRKRWDRQSQAFYNLFRQADRVEKLAVVIERLEQGDLKLRVRA 684

Query:   689 LESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPAILAYVSCAFFGFQVLFGI 748
             LESERAFQRVAAVQKTVGSAV AGSLVNLATILYLNSI+ PA +AY  CAFF  QVL GI
Sbjct:   685 LESERAFQRVAAVQKTVGSAVAAGSLVNLATILYLNSIKTPATIAYTVCAFFSLQVLIGI 744

Query:   749 IKVKKLDQREKLITGTA 765
             IKVKK DQREKLITGTA
Sbjct:   745 IKVKKFDQREKLITGTA 761

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006810 "transport" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q3ACS7 CHY_1218 "ABC1 family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 611 (220.1 bits), Expect = 6.8e-67, Sum P(2) = 6.8e-67
 Identities = 140/345 (40%), Positives = 215/345 (62%)

Query:   175 SRFKTYSTIQRTLEIWGFVLTFVFR-AWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESI 233
             SRF+  + I      +GF+LT++ R A L+  + +       E +++    LA  L+E +
Sbjct:    10 SRFREIARIFTEFG-FGFILTYLKRPAALDKVEIN-------EYRLIE---LAGNLREML 58

Query:   234 LRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVF 293
              +LGPTFIK+GQ  ST+ D+L + +  EL +LQD+V P P E   S +E+ LG+PL D+F
Sbjct:    59 EKLGPTFIKLGQVLSTQRDLLPKPFQAELEKLQDRVTPVPFEVIASYIEKNLGSPLHDIF 118

Query:   294 ERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPK 352
               FD  PIA+AS+GQV+RA+LK G+ VVVKV+RPG+ +L   DL+ L  IA ++Q    K
Sbjct:   119 IEFDENPIASASIGQVYRAKLKNGKNVVVKVKRPGVDELIKTDLQILYQIASFIQN---K 175

Query:   353 SDGAKRDW-VAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQI 411
             ++  K +  + +++E  S L +E+DYT EA N E F  N K    + +P +FW +T   I
Sbjct:   176 TNWGKINKPLRMWEELKSSLERELDYTGEARNIENFRQNIKYKKLI-IPEVFWNFTNENI 234

Query:   412 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 471
             L +E V GIK++    L E+G+D  +L R  VE ++ QIL  G+FHADPHPGNIA+  + 
Sbjct:   235 LVLEAVYGIKVSERFQLIEMGIDLDQLARDLVEIFILQILEDGYFHADPHPGNIAITPL- 293

Query:   472 GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM 516
              G +I YDFGM+G ++P +RE L+     +  KD  ++ + ++++
Sbjct:   294 -GDIILYDFGMVGFLNPWLREILITLLISVVRKDFARISELLIEL 337

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_1218 CHY_1218 "ABC1 family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 611 (220.1 bits), Expect = 6.8e-67, Sum P(2) = 6.8e-67
 Identities = 140/345 (40%), Positives = 215/345 (62%)

Query:   175 SRFKTYSTIQRTLEIWGFVLTFVFR-AWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESI 233
             SRF+  + I      +GF+LT++ R A L+  + +       E +++    LA  L+E +
Sbjct:    10 SRFREIARIFTEFG-FGFILTYLKRPAALDKVEIN-------EYRLIE---LAGNLREML 58

Query:   234 LRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVF 293
              +LGPTFIK+GQ  ST+ D+L + +  EL +LQD+V P P E   S +E+ LG+PL D+F
Sbjct:    59 EKLGPTFIKLGQVLSTQRDLLPKPFQAELEKLQDRVTPVPFEVIASYIEKNLGSPLHDIF 118

Query:   294 ERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPK 352
               FD  PIA+AS+GQV+RA+LK G+ VVVKV+RPG+ +L   DL+ L  IA ++Q    K
Sbjct:   119 IEFDENPIASASIGQVYRAKLKNGKNVVVKVKRPGVDELIKTDLQILYQIASFIQN---K 175

Query:   353 SDGAKRDW-VAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQI 411
             ++  K +  + +++E  S L +E+DYT EA N E F  N K    + +P +FW +T   I
Sbjct:   176 TNWGKINKPLRMWEELKSSLERELDYTGEARNIENFRQNIKYKKLI-IPEVFWNFTNENI 234

Query:   412 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 471
             L +E V GIK++    L E+G+D  +L R  VE ++ QIL  G+FHADPHPGNIA+  + 
Sbjct:   235 LVLEAVYGIKVSERFQLIEMGIDLDQLARDLVEIFILQILEDGYFHADPHPGNIAITPL- 293

Query:   472 GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM 516
              G +I YDFGM+G ++P +RE L+     +  KD  ++ + ++++
Sbjct:   294 -GDIILYDFGMVGFLNPWLREILITLLISVVRKDFARISELLIEL 337

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2019838 AT1G79600 [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
 Identities = 138/384 (35%), Positives = 214/384 (55%)

Query:   180 YSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPT 239
             +  ++R+LEI G +  F  +  ++ QK   +G +   +K ++++A+   L+    RLGPT
Sbjct:   110 FKALRRSLEILGALGGFALKLGID-QK---QGNL---EKNMKKRAIE--LRRIFTRLGPT 160

Query:   240 FIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVE 299
             F+K+GQ  STR D+   +Y++EL+ELQD +P FP   A + +E EL   L+ +F     E
Sbjct:   161 FVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLETIFSSVSPE 220

Query:   300 PIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK 357
             PIAAASLGQV++A+L+  G+ V VKVQRPG+++   +D   +R + + + K     D   
Sbjct:   221 PIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKY---VDFIT 277

Query:   358 RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYV 417
              D + + DE A  +YQE++Y QEA NA  F   + D   V VP IFW+YT+ ++LTME+V
Sbjct:   278 TDVLTLIDEFACRVYQELNYVQEAQNARRFKKLYADKADVLVPDIFWDYTSRKVLTMEWV 337

Query:   418 PGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNI-AVDDVNGGRLI 476
              G K+N   +++  G+    L    ++  L Q+L +GFFHADPHPGN+ A  D   G+L 
Sbjct:   338 EGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPD---GKLA 394

Query:   477 FYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL 536
             F DFGMM       R  ++     +  +D + + +    +  L P  D T +    + F 
Sbjct:   395 FLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALRDF- 453

Query:   537 NSFEERLAAQRKEREITTQELGFK 560
               F++ L         T  EL FK
Sbjct:   454 --FDDAL-------NYTVSELNFK 468

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q74E76 GSU1088 "Quinone biosynthesis kinase AarF, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 587 (211.7 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
 Identities = 129/369 (34%), Positives = 212/369 (57%)

Query:   178 KTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKV--LRRKALAKWLKESILR 235
             + Y  I R L  +GF       + +   +F  RG     K    L R + A+ ++ ++  
Sbjct:    15 RRYRQIVRVLVKYGFEHAL---SLMGLSRFVARGRRLFRKPEPELARLSPAERMRLALEE 71

Query:   236 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 295
             LGPTF+K+GQ  STR D++ + +V E + LQDQVP FP E A+  +  ELG   ++ F  
Sbjct:    72 LGPTFVKLGQILSTRPDVIPRSFVLEFARLQDQVPSFPFEDALDQIRRELGRDPEERFSF 131

Query:   296 FDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD 354
              D EP+AAAS+ QVHRARL  GEEVV+KV+RPG+ +  + D+  +  +A   ++  P+SD
Sbjct:   132 IDPEPLAAASIAQVHRARLVSGEEVVIKVRRPGVVEAVETDIDAMMGLAVLAERHLPRSD 191

Query:   355 GAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTM 414
                 D V +  E A  + +E+D+ +E    E FA NF     +  PT+ W+ T   +LTM
Sbjct:   192 --IYDPVGLVKEFARTIRREMDFAREGHTIERFAENFAGDPTLYFPTVHWDCTARGLLTM 249

Query:   415 EYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNG 472
             E++ GIK++   +L+  G+DR+ + R   +++L+ +L+HGFFH DPHPGN+ +  D+V  
Sbjct:   250 EFINGIKVSDTAALERAGMDRRLIARRGADAFLKMVLTHGFFHGDPHPGNVLILPDNV-- 307

Query:   473 GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA 532
               +   D+GM+G +   ++  L +    I ++D D+V+  ++  G +  T DT A++R  
Sbjct:   308 --ICLLDYGMVGRLDAQLKGYLTDILLAIVQRDVDEVISLLLYSGEIADTLDTRALKRDL 365

Query:   533 QFFLNSFEE 541
                ++++ E
Sbjct:   366 TGLIDNYYE 374

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|GSU_1088 GSU_1088 "ubiquinone biosynthesis protein AarF, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 587 (211.7 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
 Identities = 129/369 (34%), Positives = 212/369 (57%)

Query:   178 KTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKV--LRRKALAKWLKESILR 235
             + Y  I R L  +GF       + +   +F  RG     K    L R + A+ ++ ++  
Sbjct:    15 RRYRQIVRVLVKYGFEHAL---SLMGLSRFVARGRRLFRKPEPELARLSPAERMRLALEE 71

Query:   236 LGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFER 295
             LGPTF+K+GQ  STR D++ + +V E + LQDQVP FP E A+  +  ELG   ++ F  
Sbjct:    72 LGPTFVKLGQILSTRPDVIPRSFVLEFARLQDQVPSFPFEDALDQIRRELGRDPEERFSF 131

Query:   296 FDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD 354
              D EP+AAAS+ QVHRARL  GEEVV+KV+RPG+ +  + D+  +  +A   ++  P+SD
Sbjct:   132 IDPEPLAAASIAQVHRARLVSGEEVVIKVRRPGVVEAVETDIDAMMGLAVLAERHLPRSD 191

Query:   355 GAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTM 414
                 D V +  E A  + +E+D+ +E    E FA NF     +  PT+ W+ T   +LTM
Sbjct:   192 --IYDPVGLVKEFARTIRREMDFAREGHTIERFAENFAGDPTLYFPTVHWDCTARGLLTM 249

Query:   415 EYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNG 472
             E++ GIK++   +L+  G+DR+ + R   +++L+ +L+HGFFH DPHPGN+ +  D+V  
Sbjct:   250 EFINGIKVSDTAALERAGMDRRLIARRGADAFLKMVLTHGFFHGDPHPGNVLILPDNV-- 307

Query:   473 GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA 532
               +   D+GM+G +   ++  L +    I ++D D+V+  ++  G +  T DT A++R  
Sbjct:   308 --ICLLDYGMVGRLDAQLKGYLTDILLAIVQRDVDEVISLLLYSGEIADTLDTRALKRDL 365

Query:   533 QFFLNSFEE 541
                ++++ E
Sbjct:   366 TGLIDNYYE 374

GO:0003674 "molecular_function" evidence=ND

GO:0006744 "ubiquinone biosynthetic process" evidence=ISS

TAIR|locus:2128116 ACDO1 "ABC1-like kinase related to chlorophyll degradation and oxidative stress 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
 Identities = 146/420 (34%), Positives = 221/420 (52%)

Query:   156 FKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEI-WGFVLTFVFRAWLNNQKFSYRGGMT 214
             F+K   E V   V      SR    S + R +EI W   L      W +   + +  G  
Sbjct:   110 FRKYSPETVRSKVLE----SRGAVVSLVSRGVEIVWTLGLY-----W-STLTYDFLVGRD 159

Query:   215 EEKKVLRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPS 274
             EE    R    A+ L+  +  LGP+FIK GQ  + R DI+ ++Y++EL  LQD VPPFP+
Sbjct:   160 EEVVPFR----ARQLRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPN 215

Query:   275 ETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLF 332
             E A +I+EEELG PL+++F +   + IAAASLGQV+RA L+  GE+V +KVQRP ++ + 
Sbjct:   216 EVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVYRATLRATGEDVAIKVQRPQIEPII 275

Query:   333 DIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFK 392
               DL   R +A +L     +  G   +   I DE    L +E+DYT EA N E F  NFK
Sbjct:   276 YRDLFLFRTLASFLNGFSLQKLGCNAE--LIVDEFGEKLLEELDYTLEARNIEDFLENFK 333

Query:   393 DMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS 452
             D   VK+P ++     P++L ME++ GI+    Q++ + G+D        V + L Q+L 
Sbjct:   334 DDPTVKIPGVYKNLCGPRVLVMEWIDGIRCTDPQAIKDAGIDLNGFLTVGVSAALRQLLE 393

Query:   453 HGFFHADPHPGNI-AVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ 511
              G FH DPHPGNI A+ D   GR+ + DFG +  +S   ++ L++A      +D  ++  
Sbjct:   394 FGLFHGDPHPGNIFAMQD---GRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYGEMAN 450

Query:   512 AMVQMGVLVPTGDTTAVRRTAQ-FFLNSFEERLAAQRKEREITTQ--ELGFKKPLSKEEK 568
                ++G L    D + +    +  + NS  + LA     R +T Q  +L +  P+   E+
Sbjct:   451 DFTRLGFLAKDTDVSPIVPALEAIWQNSAGKGLA-DFNFRSVTGQFNKLVYDFPIRIPER 509

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=IMP

GO:0080183 "response to photooxidative stress" evidence=IMP

TAIR|locus:2013041 AT1G71810 [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
 Identities = 130/331 (39%), Positives = 196/331 (59%)

Query:   207 FSYRGGMTEEKKVLRR-----KALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDE 261
             FSY  G+    + L R     K  A  L++ ++ LGP ++KI Q  S+R D++   Y+DE
Sbjct:    96 FSYWFGLRLADEALERSDQMFKVRAAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDE 155

Query:   262 LSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEV 319
             LS LQDQ+ PF +E A +++E+ELG P+D++F     EP+AAASLGQV++ARL+  G+ V
Sbjct:   156 LSLLQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVV 215

Query:   320 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQ 379
              VKVQRPG++    +D   LR IA  ++K    +     D  A+ DE A+ L++E+DY  
Sbjct:   216 AVKVQRPGVRAAIALDTLILRYIAGLIKK----AGRFNSDLEAVVDEWATSLFKEMDYLN 271

Query:   380 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG 439
             EA N   F   +  +  V VP ++ EY+T ++L ME+V G K+N +  L  + V     G
Sbjct:   272 EAQNGIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEGQKLNEVNDLYLVEV-----G 326

Query:   440 RYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFY 499
              Y   S+  Q+L +GF+HADPHPGN        G+L + DFGMMG   P +R+G +EA  
Sbjct:   327 VYC--SF-NQLLEYGFYHADPHPGNFL--RTYDGQLAYLDFGMMGDFRPELRDGFMEACL 381

Query:   500 GIYEKDADKVLQAMVQMGVLVPTGDTTAVRR 530
              +  +D   + +  V +G+L PT + +AV +
Sbjct:   382 HLVNRDFKALAKDFVTLGLLPPTAEKSAVTK 412

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2093711 AT3G24190 [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 6.4e-57, Sum P(2) = 6.4e-57
 Identities = 121/312 (38%), Positives = 184/312 (58%)

Query:   217 KKVLRRK-ALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSE 275
             KKV   + A A  L+E +  LGP +IK+GQ  S R DIL+   + EL +L D+VP +P +
Sbjct:   182 KKVKENEVARAIELREIVTSLGPAYIKLGQALSIRPDILSPAAMTELQKLCDKVPSYPDD 241

Query:   276 TAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFD 333
              A++++EEELG P  DV+      PIAAASLGQV++ RLK  G+ V VKVQRP + +   
Sbjct:   242 VAMALIEEELGKPWYDVYSELSPSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVT 301

Query:   334 IDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFK- 392
             +DL  +R +  +L+K  P+      D V + DE A+  ++E+DY  E  N   FA   K 
Sbjct:   302 VDLFVIRNLGLFLRKF-PQ---VSVDVVGLVDEWAARFFEELDYVNEGENGTYFAEMMKK 357

Query:   393 DMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS 452
             D+  V VP  + +YT+ ++LT  ++ G K++  QS++    D   L    V  YL+Q+L 
Sbjct:   358 DLPQVVVPKTYQKYTSRKVLTTSWIDGEKLS--QSIES---DVGELVNVGVICYLKQLLD 412

Query:   453 HGFFHADPHPGN-IAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ 511
              GFFHADPHPGN I   D   G+L   DFG++  ++ + + G++EA   +  +D D +++
Sbjct:   413 TGFFHADPHPGNMIRTPD---GKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYDAIVK 469

Query:   512 AMVQMGVLVPTG 523
               V++G  +P G
Sbjct:   470 DFVKLG-FIPDG 480

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TIGR_CMR|SPO_0144 SPO_0144 "2-polyprenylphenol 6-hydroxylase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 483 (175.1 bits), Expect = 1.4e-51, Sum P(2) = 1.4e-51
 Identities = 111/302 (36%), Positives = 164/302 (54%)

Query:   232 SILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDD 291
             +++ +GP +IK GQ  STR D++ Q+  D+L  LQDQ+PPFP   A+  VE+ELG PL +
Sbjct:    64 ALMAMGPAYIKFGQVLSTRPDVVGQDLADQLRVLQDQLPPFPRAVAMREVEKELGRPLPE 123

Query:   292 VFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKI 349
             +F  F  EPIAAAS+ QVHRARL   GE+V VKV RPG++  F  D+      A  +   
Sbjct:   124 MFSEFS-EPIAAASIAQVHRARLADSGEDVAVKVLRPGIERAFRKDVDAFYFAARIVDLF 182

Query:   350 DPKSDGAKR-DWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTT 408
              P   GA+R   + + +    V+  E+D   E+A A  FA N K+    ++P + W  + 
Sbjct:   183 AP---GARRLRPMEVIEHFDGVVRGELDLRLESAAASEFADNTKEDAGFRLPPVRWSLSA 239

Query:   409 PQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVD 468
              +++T+ +  G+ +    +LD  G +R+ LG   +  +L   L  GFFHAD H GN+ V 
Sbjct:   240 RRVMTLGWADGVPLGDNAALDAAGHNRRDLGERVLRLFLLHALRDGFFHADMHQGNLKV- 298

Query:   469 DVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV 528
                 G +I YDFG+MG I    R    E  +G   +D  +V +   + G +  T D    
Sbjct:   299 -AADGDIIAYDFGIMGHIDEYTRRVYAEILFGFIRRDYKRVAEVHFEAGYVPATQDVDEF 357

Query:   529 RR 530
              R
Sbjct:   358 AR 359

GO:0006744 "ubiquinone biosynthetic process" evidence=ISS

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019411001 SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (745 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	765
COG0661	517	COG0661, AarF, Predicted unusual protein kinase [G	1e-151
TIGR01982	437	TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase	1e-105
PRK04750	537	PRK04750, ubiB, putative ubiquinone biosynthesis p	1e-81
pfam03109	117	pfam03109, ABC1, ABC1 family	6e-46
TIGR03724	199	TIGR03724, arch_bud32, Kae1-associated kinase Bud3	1e-05
cd05167	311	cd05167, PI4Kc_III_alpha, Phosphoinositide 4-kinas	1e-04
PRK14879	211	PRK14879, PRK14879, serine/threonine protein kinas	3e-04
cd05120	155	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphot	6e-04

>gnl|CDD|223733 COG0661, AarF, Predicted unusual protein kinase [General function prediction only]

 Score =  451 bits (1162), Expect = e-151
 Identities = 191/556 (34%), Positives = 281/556 (50%), Gaps = 48/556 (8%)

Query: 173 RWSRFKTYSTIQRTLEIWGFVLTFVFRAWLNNQKFSYRGGMTEEKKVLRRKALAKWLKES 232
                       R   + G +L    R  L  +  S+ G          R+  A+ L+ +
Sbjct: 5   YAVSRLPRIIRVRLRYLLGRLLRLTGRLALLLRLLSWLGKSKLASSEELREKRAERLRLA 64

Query: 233 ILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDV 292
           +  LGPTFIK+GQ  STR D++  EY +EL++LQD+VPPFP E A  I+EEELG P++++
Sbjct: 65  LEELGPTFIKLGQILSTRPDLVPPEYAEELAKLQDRVPPFPFEEAERIIEEELGRPIEEL 124

Query: 293 FERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP 351
           F  F+ EPIA+AS+ QVHRA LK GEEV VKVQRPG+++  + DLK LR +A  ++++ P
Sbjct: 125 FSEFEPEPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPP 184

Query: 352 KSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQI 411
              G + D V + DE    L +E+DY +EAANAE F  NFKD   V VP ++WEYTT ++
Sbjct: 185 --GGRRLDLVEVVDEFEKRLREELDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRRV 242

Query: 412 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN 471
           LTME++ GIKI+ I +L   G+DRK L    V ++L Q+L  GFFHADPHPGNI V    
Sbjct: 243 LTMEWIDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLRDGFFHADPHPGNILVRSD- 301

Query: 472 GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT 531
            GR++  DFG++G + P  R  L E       +D D+V +  V++G + P  D   +   
Sbjct: 302 -GRIVLLDFGIVGRLDPKFRRYLAELLLAFLNRDYDRVAELHVELGYVPPDTDRDPLAAA 360

Query: 532 AQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQP 591
            +  L                      + KPL +             I + L  +A   P
Sbjct: 361 IRAVLEPI-------------------YGKPLEEIS--------FGEILDKLFEVARRFP 393

Query: 592 FRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRW 651
            R P     + R   +++G+G+ LDPRF++  +A+P   + LK +      +L++ ++  
Sbjct: 394 MRLPPELVLLQRTLLLVEGVGRQLDPRFNLWAVAQPLLAKWLKKQL--SPKLLRELKDEA 451

Query: 652 DRQTRAFYNLFRQADRVEKLAETIQRLQGDLKLRVRTLESER-AFQRVAAVQKTVGSA-- 708
                A   L R    +              +  +    SE  A   + AV +    +  
Sbjct: 452 VAVLNALPLLPRLLRDLLDN----------DREELSLRSSEELALLLLKAVARLSIGSIL 501

Query: 709 -VGAGSLVNLATILYL 723
            V     V L  IL L
Sbjct: 502 LVVLAVTVLLIAILLL 517

Length = 517

>gnl|CDD|233667 TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase

 Score =  328 bits (842), Expect = e-105
 Identities = 143/415 (34%), Positives = 221/415 (53%), Gaps = 32/415 (7%)

Query: 221 RRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSI 280
           R  +  + L+ ++  LGPTFIK GQ  STR D+L  +  +ELS LQD+VPPF  + A  +
Sbjct: 45  RLMSRGERLRLALEELGPTFIKFGQTLSTRADLLPADIAEELSLLQDRVPPFDFKVARKV 104

Query: 281 VEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNL 339
           +E  LG PL+++F  F+ +P+AAAS+ QVHRARL  G+EV VKV RPG++     D+  L
Sbjct: 105 IEAALGGPLEELFAEFEEKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALL 164

Query: 340 RVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKV 399
             +A  ++++ P  D  +     +  E    L +E+D  +EAANA     NFK+   V V
Sbjct: 165 YRLARIVERLSP--DSRRLRPTEVVKEFEKTLRRELDLRREAANASELGENFKNDPGVYV 222

Query: 400 PTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHAD 459
           P ++W+ T+ ++LTME++ GI ++ I +LDE G+DRK L      S+L Q+L  GFFHAD
Sbjct: 223 PEVYWDRTSERVLTMEWIDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRDGFFHAD 282

Query: 460 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL 519
            HPGNI V     G++I  DFG++G +S   R  L E  YG   +D  +V +     G +
Sbjct: 283 LHPGNIFVLK--DGKIIALDFGIVGRLSEEDRRYLAEILYGFLNRDYRRVAEVHFDAGYV 340

Query: 520 VPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAI 579
               D           +  FE+ +      R I   E  F +PL        K+  +  +
Sbjct: 341 PSDTD-----------MAEFEQAI------RAIG--EPIFGQPL--------KEISVGRL 373

Query: 580 GEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYAMELLK 634
              L  I  D           + +    ++G+G+ LDP  ++ ++A+P+    ++
Sbjct: 374 LAGLFKITRDFNMELQPQLLLLQKTLLTVEGVGRQLDPDLNMWKVAEPFVKRWIR 428

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 437

>gnl|CDD|235310 PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed

 Score =  270 bits (692), Expect = 1e-81
 Identities = 116/303 (38%), Positives = 179/303 (59%), Gaps = 12/303 (3%)

Query: 222 RKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIV 281
            K   + L+ ++  LGP F+K GQ  STR D+   +  DEL+ LQD+VPPF    A +I+
Sbjct: 48  DKPRGERLRLALEELGPIFVKFGQMLSTRRDLFPPDIADELALLQDRVPPFDGALARAII 107

Query: 282 EEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNL 339
           E+ LG P+++ F+ FD++P+A+AS+ QVH ARLK  G EVVVKV RP +  + D DL  +
Sbjct: 108 EKALGGPVEEWFDDFDIKPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALM 167

Query: 340 RVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDY 396
             +A +++++ P  DG +   R+ VA +++    L+ E+D  +EAANA     NF+D D 
Sbjct: 168 YRLARWVERLLP--DGRRLKPREVVAEFEK---TLHDELDLMREAANASQLRRNFEDSDM 222

Query: 397 VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFF 456
           + VP ++W+Y +  ++ ME + GI ++ + +L   G D K L    VE +  Q+   GFF
Sbjct: 223 LYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVFRDGFF 282

Query: 457 HADPHPGNIAVDDVNG--GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV 514
           HAD HPGNI V        R I  DFG++GS++   +  L E F   + +D  +V +  V
Sbjct: 283 HADMHPGNIFVSYDPPENPRYIALDFGIVGSLNKEDKRYLAENFLAFFNRDYRRVAELHV 342

Query: 515 QMG 517
           + G
Sbjct: 343 ESG 345

Length = 537

>gnl|CDD|111949 pfam03109, ABC1, ABC1 family

 Score =  159 bits (404), Expect = 6e-46
 Identities = 64/122 (52%), Positives = 81/122 (66%), Gaps = 6/122 (4%)

Query: 283 EELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRV 341
           EELGAP+++VF  FD EPIAAAS+ QVHRA LK GEEV VKVQRPG+K     DLK L+ 
Sbjct: 1   EELGAPVEEVFAEFDEEPIAAASIAQVHRAVLKDGEEVAVKVQRPGVKKRIRSDLKLLKF 60

Query: 342 IAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPT 401
           +A+ L+K  P       D   + DE    L QE+D+ +EAANAE F  NF D+ +V VP 
Sbjct: 61  LAKILKKFFP-----GFDLDWLVDEFRKSLPQELDFLREAANAEKFRENFADLPWVYVPK 115

Query: 402 IF 403
           ++
Sbjct: 116 VY 117

This family includes ABC1 from yeast and AarF from E. coli. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex and E. coli AarF is required for ubiquinone production. It has been suggested that members of the ABC1 family are novel chaperonins. These proteins are unrelated to the ABC transporter proteins. Length = 117

>gnl|CDD|234331 TIGR03724, arch_bud32, Kae1-associated kinase Bud32

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 34/141 (24%)

Query: 397 VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR-KRLGRYAVESYLEQILSHGF 455
           V  P ++      + + MEY+ G  +     ++E   +  + +GR      + ++   G 
Sbjct: 59  VNTPVVYDVDPDNKTIVMEYIEGKPLK--DVIEEGNDELLREIGRL-----VGKLHKAGI 111

Query: 456 FHADPHPGNIAVDDVNGGRLIFYDFGM--------------------MGSISPNIREGLL 495
            H D    NI    V   +L   DFG+                    + S  P+  E L 
Sbjct: 112 VHGDLTTSNII---VRDDKLYLIDFGLGKYSDEIEDKAVDLHVLKRSLESTHPDKAEELF 168

Query: 496 EAF---YGIYEKDADKVLQAM 513
           EAF   Y     +A  VL+ +
Sbjct: 169 EAFLEGYREEFGEAKDVLERV 189

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine [Unknown function, General]. Length = 199

>gnl|CDD|119427 cd05167, PI4Kc_III_alpha, Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 31/143 (21%)

Query: 441 YAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP--NIREGLLEAF 498
           Y++ SYL QI        D H GNI +DD   G +I  DFG +  ISP  N++       
Sbjct: 155 YSLISYLLQI-------KDRHNGNIMIDDD--GHIIHIDFGFIFEISPGGNLK------- 198

Query: 499 YGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREI---TT 554
              +E    K+ + MVQ MG    + + T  +   +  + +F   LA +    EI     
Sbjct: 199 ---FESAPFKLTKEMVQIMG---GSMEATPFKWFVELCVRAF---LAVRPYMDEIVSLVE 249

Query: 555 QELGFKKPLSKEEKIEKKKQRLA 577
             L    P  + + I+  +QR A
Sbjct: 250 LMLDSGLPCFRGDTIKNLRQRFA 272

PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling molecule. Vertebrate PI4KIIIalpha is also part of a signaling complex associated with P2X7 ion channels. The yeast homolog, Stt4p, is also important in regulating the conversion of phosphatidylserine to phosphatidylethanolamine at the ER and Golgi interface. Mammalian PI4KIIIalpha is highly expressed in the nervous system. Length = 311

>gnl|CDD|237847 PRK14879, PRK14879, serine/threonine protein kinase; Provisional

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 30/138 (21%)

Query: 397 VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFF 456
           V VP +++      I+ MEY+ G  +     ++  G++   L R  +   + ++ S G  
Sbjct: 61  VNVPAVYFVDPENFIIVMEYIEGEPLK--DLINSNGMEELELSR-EIGRLVGKLHSAGII 117

Query: 457 HADPHPGNIAVDDVNGGRLIFYDFGM--------------------MGSISPNIREGLLE 496
           H D    N+    ++GG++   DFG+                    + S  P+  E L E
Sbjct: 118 HGDLTTSNMI---LSGGKIYLIDFGLAEFSKDLEDRAVDLHVLLRSLESTHPDWAEELFE 174

Query: 497 AF---YG-IYEKDADKVL 510
           AF   Y  +  + A++VL
Sbjct: 175 AFLEGYREVMGEKAEEVL 192

Length = 211

>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 16/118 (13%)

Query: 372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKINRIQSLD 429
            +  D  +E A  +L A        + VP +           L ME++ G      ++LD
Sbjct: 33  EKGADREREVAILQLLARK-----GLPVPKVLASGESDGWSYLLMEWIEG------ETLD 81

Query: 430 ELGVDRKRLGRYAVESYLE---QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG 484
           E+  + K      +   L    Q+      H D HPGNI VDD     +I +++   G
Sbjct: 82  EVSEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYG 139

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	765
COG0661	517	AarF Predicted unusual protein kinase [General fun	100.0
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	100.0
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	100.0
KOG1235	538	consensus Predicted unusual protein kinase [Genera	100.0
KOG1236	565	consensus Predicted unusual protein kinase [Genera	100.0
KOG1234	363	consensus ABC (ATP binding cassette) 1 protein [Ge	100.0
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	99.94
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.81
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.79
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.78
smart00090	237	RIO RIO-like kinase.	99.69
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.69
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.69
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.67
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.67
KOG0605	550	consensus NDR and related serine/threonine kinases	99.66
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.64
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.64
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.63
PRK14879	211	serine/threonine protein kinase; Provisional	99.61
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.61
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.59
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.59
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.58
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.58
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.58
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.57
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.57
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.56
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.56
KOG0578	550	consensus p21-activated serine/threonine protein k	99.56
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.56
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.56
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.56
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.55
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.55
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	99.55
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.55
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.55
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.55
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.54
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.54
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.54
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.54
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.54
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.54
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.54
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.54
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.54
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.54
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.54
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.53
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.53
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.53
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.53
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.52
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.52
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.52
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.52
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.52
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.52
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.52
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.51
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.51
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.51
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.51
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.51
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.51
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.51
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.51
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.5
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.5
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.5
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.5
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.5
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.5
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.5
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.5
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.49
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.49
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.49
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.49
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.49
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.49
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.49
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.48
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.48
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.48
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.48
PRK09188	365	serine/threonine protein kinase; Provisional	99.48
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.48
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.48
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.47
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.47
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.46
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.46
PTZ00267	478	NIMA-related protein kinase; Provisional	99.46
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.46
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.45
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.45
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.45
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.45
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.45
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.45
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.45
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.45
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.45
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.45
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.45
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.45
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.45
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.44
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.44
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.44
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.44
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.44
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.44
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.44
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.44
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.43
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.43
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.43
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.43
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.43
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.43
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.43
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.43
PTZ00283	496	serine/threonine protein kinase; Provisional	99.43
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.43
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.42
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.42
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.42
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.42
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.41
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.41
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.41
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.41
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.41
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.41
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.41
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.41
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.41
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.41
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.41
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.41
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.41
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.41
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.41
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.4
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.4
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.4
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.4
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.4
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.4
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.4
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.4
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.4
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.4
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.4
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.4
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.4
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.4
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.39
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.39
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.39
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.39
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.39
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.39
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.39
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.39
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.39
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.39
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.39
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.38
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.38
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.38
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.38
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.38
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.38
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.37
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.37
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.37
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.37
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.37
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.37
KOG0198	313	consensus MEKK and related serine/threonine protei	99.37
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.37
PHA03212	391	serine/threonine kinase US3; Provisional	99.37
PHA02988	283	hypothetical protein; Provisional	99.37
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.37
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.37
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.37
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.37
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.37
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.37
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.37
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.36
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.36
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.36
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.36
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.36
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.36
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.36
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.36
PHA03211	461	serine/threonine kinase US3; Provisional	99.36
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.36
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.36
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.36
PTZ00284	467	protein kinase; Provisional	99.35
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.35
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.35
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.35
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.35
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.35
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.35
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.35
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.35
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.35
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.35
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.35
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.35
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.34
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.34
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.34
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.34
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.34
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.34
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.34
PHA03209	357	serine/threonine kinase US3; Provisional	99.34
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.34
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.34
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.34
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.34
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.34
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.33
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.33
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.33
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.33
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.33
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.33
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.33
PHA03207	392	serine/threonine kinase US3; Provisional	99.33
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.33
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.33
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	99.33
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.33
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.33
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.33
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.33
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.32
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.32
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.32
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.32
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.32
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.32
KOG0610	459	consensus Putative serine/threonine protein kinase	99.32
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.32
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.32
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.31
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.31
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.31
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.31
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.31
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.31
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.31
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.31
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.31
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.31
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.31
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.31
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.31
PRK12274	218	serine/threonine protein kinase; Provisional	99.31
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.31
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.3
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.3
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.3
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.3
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.3
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.3
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.3
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.3
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.3
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.3
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.3
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	99.3
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.3
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.29
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.29
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.29
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.29
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.29
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.29
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.29
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.29
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.29
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.29
PTZ00036	440	glycogen synthase kinase; Provisional	99.28
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.28
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.28
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.28
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.28
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.28
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.28
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.27
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.27
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.27
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.27
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.27
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.27
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.27
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.27
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.27
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.27
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.27
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.27
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.27
PHA02882	294	putative serine/threonine kinase; Provisional	99.27
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.27
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.27
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.27
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.26
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.26
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.26
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.26
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.26
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.26
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.26
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.25
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.25
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.25
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.25
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.25
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.24
KOG0589	426	consensus Serine/threonine protein kinase [General	99.24
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.24
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.24
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.24
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.24
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.23
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.23
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.22
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.22
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.22
PLN00009	294	cyclin-dependent kinase A; Provisional	99.21
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.21
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.21
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.21
PRK10345	210	hypothetical protein; Provisional	99.2
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.2
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.2
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.2
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.2
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.19
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.19
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.19
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.19
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.18
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.18
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.18
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.18
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.17
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.17
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.16
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.16
PHA03210	501	serine/threonine kinase US3; Provisional	99.16
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.16
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.15
KOG3653	534	consensus Transforming growth factor beta/activin	99.15
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.14
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.14
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.14
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.14
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.13
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.13
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.12
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.11
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.11
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.11
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.11
COG0478	304	RIO-like serine/threonine protein kinase fused to	99.1
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.1
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.1
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.09
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.08
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.07
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.07
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.06
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.06
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.06
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.05
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.05
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.04
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.04
KOG0586	596	consensus Serine/threonine protein kinase [General	99.03
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.03
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.03
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.01
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.01
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.01
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.0
KOG3087	229	consensus Serine/threonine protein kinase [General	98.99
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.99
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	98.99
KOG1167	418	consensus Serine/threonine protein kinase of the C	98.97
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	98.95
KOG0695	593	consensus Serine/threonine protein kinase [Signal	98.93
KOG0607	463	consensus MAP kinase-interacting kinase and relate	98.93
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	98.92
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	98.91
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	98.91
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	98.9
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	98.9
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.9
KOG2052	513	consensus Activin A type IB receptor, serine/threo	98.89
KOG1027	903	consensus Serine/threonine protein kinase and endo	98.89
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.89
KOG0596	677	consensus Dual specificity; serine/threonine and t	98.88
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	98.87
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	98.87
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	98.79
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	98.78
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	98.72
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	98.72
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.7
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	98.7
KOG1152	772	consensus Signal transduction serine/threonine kin	98.69
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.65
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	98.64
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	98.62
KOG0584	632	consensus Serine/threonine protein kinase [General	98.6
PF01636	239	APH: Phosphotransferase enzyme family This family	98.59
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	98.55
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	98.55
PRK10593	297	hypothetical protein; Provisional	98.53
COG0515	384	SPS1 Serine/threonine protein kinase [General func	98.51
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	98.51
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.51
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.48
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	98.48
KOG2270	520	consensus Serine/threonine protein kinase involved	98.47
PRK05231	319	homoserine kinase; Provisional	98.4
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	98.38
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	98.35
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	98.31
PRK09550	401	mtnK methylthioribose kinase; Reviewed	98.27
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	98.26
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	98.19
PLN02756	418	S-methyl-5-thioribose kinase	98.18
PLN00181	793	protein SPA1-RELATED; Provisional	98.16
PRK12396	409	5-methylribose kinase; Reviewed	98.13
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	98.05
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	98.04
KOG2268	465	consensus Serine/threonine protein kinase [Signal	97.99
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	97.95
PRK06148	1013	hypothetical protein; Provisional	97.93
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	97.86
PRK09902	216	hypothetical protein; Provisional	97.84
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	97.84
PRK06149	972	hypothetical protein; Provisional	97.76
PLN02876	822	acyl-CoA dehydrogenase	97.76
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	97.72
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	97.57
KOG1290	590	consensus Serine/threonine protein kinase [Signal	97.48
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	97.45
COG2334	331	Putative homoserine kinase type II (protein kinase	97.31
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	97.29
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	97.2
PRK11768	325	serine/threonine protein kinase; Provisional	97.19
PLN02236	344	choline kinase	97.1
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	97.1
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.08
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	96.88
KOG0606	1205	consensus Microtubule-associated serine/threonine	96.8
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	96.8
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	96.68
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	96.51
KOG0590	601	consensus Checkpoint kinase and related serine/thr	96.41
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	96.31
KOG2269	531	consensus Serine/threonine protein kinase [Signal	96.11
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	96.04
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	95.54
PF04655	253	APH_6_hur: Aminoglycoside/hydroxyurea antibiotic r	95.52
PRK10271	188	thiK thiamine kinase; Provisional	94.96
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	94.31
PTZ00384	383	choline kinase; Provisional	93.76
PF07914	414	DUF1679: Protein of unknown function (DUF1679); In	93.62
COG4857	408	Predicted kinase [General function prediction only	93.42
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	93.01
PTZ00296	442	choline kinase; Provisional	92.64
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	92.2
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	92.14
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	90.94
KOG0590	601	consensus Checkpoint kinase and related serine/thr	89.49
PF02958	294	EcKinase: Ecdysteroid kinase; InterPro: IPR004119	89.19
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	88.78
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	85.32
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	83.85
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	80.92

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=100.00  E-value=2.7e-85  Score=743.95  Aligned_cols=388  Identities=43%  Similarity=0.768  Sum_probs=368.1

Q ss_pred             HHHHHHHHHHHHHHhhCCcchhhhHHHhhCccCCCHHHHHHHHhhhhCCCCCChHHHHHHHHHHhCCChhhhhcccCccc
Q 004254          221 RRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEP  300 (765)
Q Consensus       221 ~~~~~a~~lr~~l~~LGptfIKlGQ~lStR~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~P  300 (765)
                      +++..+++|+++|++|||||||+||+||||+|++|++|+++|++|||+|||+|+++++++|++++|.+++++|++|+++|
T Consensus        53 ~~~~~~~rL~~~L~~LGPtfIK~GQ~LStR~Dl~p~e~~~eL~~LQD~vpp~~~~~~~~iie~eLG~~iee~F~eF~~~P  132 (517)
T COG0661          53 LREKRAERLRLALEELGPTFIKLGQILSTRPDLVPPEYAEELAKLQDRVPPFPFEEAERIIEEELGRPIEELFSEFEPEP  132 (517)
T ss_pred             HhHhHHHHHHHHHHHhCCchhhhhhHHhcCccccCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhCCCHHHHHHHcCCCc
Confidence            34456899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHH
Q 004254          301 IAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQ  379 (765)
Q Consensus       301 IgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~  379 (765)
                      |||||+||||+|++ +|++|||||||||+++.+..||.+|+.++++++++.|.  ...+++.++++||.+++..|+||++
T Consensus       133 iAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~--~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         133 IASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPG--GRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             hhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCc--cccCChHHHHHHHHHHHHHHhCHHH
Confidence            99999999999999 69999999999999999999999999999999998764  3468999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccC
Q 004254          380 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHAD  459 (765)
Q Consensus       380 EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~GffHaD  459 (765)
                      ||+|+++|++||++++.|+||+|||+||+++||||||++|++++++..++..|.|++.++..++++|++|++.+||||||
T Consensus       211 EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~g~d~k~ia~~~~~~f~~q~~~dgffHaD  290 (517)
T COG0661         211 EAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLRDGFFHAD  290 (517)
T ss_pred             HHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Q 004254          460 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSF  539 (765)
Q Consensus       460 pHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l~~~  539 (765)
                      ||||||+|+.  +|+++++|||+++++++++|..+++++.++.++|++.+++.+.++|.+++..|...+..++..+++.+
T Consensus       291 pHpGNi~v~~--~g~i~~lDfGi~g~l~~~~r~~l~~~~~a~~~rD~~~v~~~~~~~G~~~~~~~~~~~~~~i~~~~~~~  368 (517)
T COG0661         291 PHPGNILVRS--DGRIVLLDFGIVGRLDPKFRRYLAELLLAFLNRDYDRVAELHVELGYVPPDTDRDPLAAAIRAVLEPI  368 (517)
T ss_pred             CCccceEEec--CCcEEEEcCcceecCCHHHHHHHHHHHHHHHhhCHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHhh
Confidence            9999999996  89999999999999999999999999999999999999999999999999999999998888777665


Q ss_pred             HHHHHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCChhHHHHHHHHHHHHHHhhccCCCC
Q 004254          540 EERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRF  619 (765)
Q Consensus       540 ~~~l~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~l~~l~~~l~~l~~~~~i~lP~~~~~l~Ral~~leGi~~~LdP~~  619 (765)
                      .                   +.++.        +.+++.+...++++++++++++|++++++.|++.++||++++|||++
T Consensus       369 ~-------------------~~~~~--------~~~~~~~~~~~~~~~~~~~~r~p~~l~ll~r~~~~vEg~~~~ldp~~  421 (517)
T COG0661         369 Y-------------------GKPLE--------EISFGEILDKLFEVARRFPMRLPPELVLLQRTLLLVEGVGRQLDPRF  421 (517)
T ss_pred             h-------------------CCChh--------hccHHHHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHHHHHhhCccc
Confidence            2                   33432        46788899999999999999999999999999999999999999999


Q ss_pred             ChHHhHHHHHHHHHHhhhhc
Q 004254          620 DITEIAKPYAMELLKFREAG  639 (765)
Q Consensus       620 di~~~a~P~~~~~l~~~~~~  639 (765)
                      |++..+.||+.+++..+..+
T Consensus       422 ~~~~~a~p~~~~~~~~~~~~  441 (517)
T COG0661         422 NLWAVAQPLLAKWLKKQLSP  441 (517)
T ss_pred             cHHHHhhHHHHHHHHHhhhH
Confidence            99999999999998866543

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=100.00  E-value=7.5e-84  Score=736.52  Aligned_cols=416  Identities=31%  Similarity=0.547  Sum_probs=378.5

Q ss_pred             HHHHHHHHHHHhhCCcchhhhHHHhhCccCCCHHHHHHHHhhhhCCCCCChHHHHHHHHHHhCCChhhhhcccCcccccc
Q 004254          224 ALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAA  303 (765)
Q Consensus       224 ~~a~~lr~~l~~LGptfIKlGQ~lStR~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgs  303 (765)
                      ..++++|.+|++|||+|||+||+||||+|++|++|+++|++|||+|||+|+++++++++++||.+++++|.+||++|+|+
T Consensus        50 ~~~~rlr~aLe~LGp~fIKlGQ~LStR~DllP~~~~~eL~~Lqd~vpp~~~~~~~~~ie~elG~~~~~~F~~fd~~Plas  129 (537)
T PRK04750         50 PRGERLRLALEELGPIFVKFGQMLSTRRDLFPPDIADELALLQDRVPPFDGALARAIIEKALGGPVEEWFDDFDIKPLAS  129 (537)
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHcCcccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHhcChhhhcC
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEEEEe-C-CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 004254          304 ASLGQVHRARL-K-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEA  381 (765)
Q Consensus       304 aSiGQVhrA~l-~-G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA  381 (765)
                      ||+||||+|++ + |++|||||+||++.+.|+.|+++|+.++.+++++.|.  ...+++.++++|+.+.+.+|+||.+|+
T Consensus       130 aSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~--~~~l~~~~~v~e~~~~l~~ElD~~~Ea  207 (537)
T PRK04750        130 ASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPD--GRRLKPREVVAEFEKTLHDELDLMREA  207 (537)
T ss_pred             CCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcc--cccCCHHHHHHHHHHHHHHhhCHHHHH
Confidence            99999999999 5 9999999999999999999999999999999998764  345789999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCC
Q 004254          382 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPH  461 (765)
Q Consensus       382 ~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~GffHaDpH  461 (765)
                      +|+.+|+++|.+.+.++||+|||+||+++||||||++|++++++..+...+.+++.+++.+++.|+.|+|.+||||+|||
T Consensus       208 ~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif~~GffHaDpH  287 (537)
T PRK04750        208 ANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVFRDGFFHADMH  287 (537)
T ss_pred             HHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCeeeCCCC
Confidence            99999999999999999999999999999999999999999998777788899999999999999999999999999999


Q ss_pred             CCcEEEeecCCC----cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004254          462 PGNIAVDDVNGG----RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       462 PGNILV~~~~~g----~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l~  537 (765)
                      ||||+++.  +|    +++++|||+++.++++.|+.+++++.|+.++|++.+++.+.++|.+.+..|...++.++..+++
T Consensus       288 PGNIlv~~--~g~~~~~i~llDFGivg~l~~~~r~~l~~~~~a~~~~D~~~v~~~~~~~g~~~~~~~~~~l~~~i~~~~~  365 (537)
T PRK04750        288 PGNIFVSY--DPPENPRYIALDFGIVGSLNKEDKRYLAENFLAFFNRDYRRVAELHVESGWVPPDTRVEELEFAIRAVCE  365 (537)
T ss_pred             hHHeEEec--CCCCCCeEEEEecceEEECCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence            99999986  55    9999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             HHHHHHHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCChhHHHHHHHHHHHHHHhhccCC
Q 004254          538 SFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDP  617 (765)
Q Consensus       538 ~~~~~l~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~l~~l~~~l~~l~~~~~i~lP~~~~~l~Ral~~leGi~~~LdP  617 (765)
                      .|.                   ..|++        +++++.++.++++++++|++++|++++++.|++.++||++++|||
T Consensus       366 ~~~-------------------~~~l~--------~i~~~~~l~~l~~~~r~~~~~ip~~l~ll~ktl~~lEG~~r~LdP  418 (537)
T PRK04750        366 PIF-------------------DKPLA--------EISFGHVLLRLFNTARRFNVEIQPQLVLLQKTLLNVEGLGRQLDP  418 (537)
T ss_pred             HHh-------------------CCCcc--------cccHHHHHHHHHHHHHHCCCcccHHHHHHHHHHHHHHHHHHHhCC
Confidence            763                   34553        467889999999999999999999999999999999999999999


Q ss_pred             CCChHHhHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 004254          618 RFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQR  677 (765)
Q Consensus       618 ~~di~~~a~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~  677 (765)
                      +||+++.++||+.+++.++.. +..+.+.+.+....+..   .+.++|.   .+.++|++
T Consensus       419 ~~d~~~~a~p~l~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~lP~---~l~~~l~~  471 (537)
T PRK04750        419 QLDLWKTAKPFLERWMKEQVG-PRALVRALKEEAPFWAE---KLPELPR---LVHDSLRQ  471 (537)
T ss_pred             CCCHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHH---HHHHhHH---HHHHHHHh
Confidence            999999999999999987764 44344444443333222   2344454   44455654

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=100.00  E-value=2.6e-77  Score=673.25  Aligned_cols=384  Identities=35%  Similarity=0.625  Sum_probs=360.2

Q ss_pred             HHHHHHHHHHHhhCCcchhhhHHHhhCccCCCHHHHHHHHhhhhCCCCCChHHHHHHHHHHhCCChhhhhcccCcccccc
Q 004254          224 ALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAA  303 (765)
Q Consensus       224 ~~a~~lr~~l~~LGptfIKlGQ~lStR~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgs  303 (765)
                      ..|++++++|++|||+|||+||++|||+|++|++||++|++|||++||+|+++++++++++||.+++++|.+||++|+|+
T Consensus        48 ~~~~~l~~~l~~lGp~fiKlGQ~lS~r~dllp~~~~~~L~~Lqd~v~p~~~~~~~~~l~~elg~~~~~~F~~fd~~plas  127 (437)
T TIGR01982        48 SRGERLRLALEELGPTFIKFGQTLSTRADLLPADIAEELSLLQDRVPPFDFKVARKVIEAALGGPLEELFAEFEEKPLAA  127 (437)
T ss_pred             cHHHHHHHHHHHcCchhHHHhHHHHhCcccCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCcCHHHHHhhCCCcceee
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 004254          304 ASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAA  382 (765)
Q Consensus       304 aSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~  382 (765)
                      ||+||||+|++ +|++||||||||++.+.+..|+.+|+.++.++++..|.  ...+++..+++|+...+.+|+||.+||+
T Consensus       128 aSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~--~~~~~~~~~~~e~~~~l~~Eldf~~Ea~  205 (437)
T TIGR01982       128 ASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPD--SRRLRPTEVVKEFEKTLRRELDLRREAA  205 (437)
T ss_pred             eehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCcc--ccccCHHHHHHHHHHHHHHHHCHHHHHH
Confidence            99999999999 89999999999999999999999999999999988764  2356899999999999999999999999


Q ss_pred             HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCC
Q 004254          383 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHP  462 (765)
Q Consensus       383 Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~GffHaDpHP  462 (765)
                      |+++|++++++.+.|++|++|+++|++++|||||++|.++.++......+.++..++..++..++.|+|.+|+||+||||
T Consensus       206 n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~~~~~~~ia~~~~~~~l~ql~~~g~~H~D~hP  285 (437)
T TIGR01982       206 NASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRDGFFHADLHP  285 (437)
T ss_pred             HHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCceeCCCCc
Confidence            99999999999999999999999999999999999999999987666667788999999999999999999999999999


Q ss_pred             CcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 004254          463 GNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEER  542 (765)
Q Consensus       463 GNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l~~~~~~  542 (765)
                      |||++++  +|+++++|||+++.++++.+..+.+++.++..+|++.+++.+.++|...+..|...+.+++..+++.|.  
T Consensus       286 gNilv~~--~g~i~liDfG~~~~l~~~~r~~l~~l~~a~~~~D~~~l~~~l~~~g~~~~~~d~~~~~~~~~~~~~~~~--  361 (437)
T TIGR01982       286 GNIFVLK--DGKIIALDFGIVGRLSEEDRRYLAEILYGFLNRDYRRVAEVHFDAGYVPSDTDMAEFEQAIRAIGEPIF--  361 (437)
T ss_pred             ccEEECC--CCcEEEEeCCCeeECCHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHh--
Confidence            9999975  899999999999999999999999999999999999999999999999999999999999888877653  


Q ss_pred             HHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCChhHHHHHHHHHHHHHHhhccCCCCChH
Q 004254          543 LAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDIT  622 (765)
Q Consensus       543 l~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~l~~l~~~l~~l~~~~~i~lP~~~~~l~Ral~~leGi~~~LdP~~di~  622 (765)
                                       +.++.        +.++++++.++++++++|++++|++|+++.|++.++||+++.|||+||+.
T Consensus       362 -----------------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~r~l~~leg~~~~L~p~~~~~  416 (437)
T TIGR01982       362 -----------------GQPLK--------EISVGRLLAGLFKITRDFNMELQPQLLLLQKTLLTVEGVGRQLDPDLNMW  416 (437)
T ss_pred             -----------------CCChh--------hCCHHHHHHHHHHHHHHCCccCCHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence                             12322        35677889999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhhhh
Q 004254          623 EIAKPYAMELLKFREA  638 (765)
Q Consensus       623 ~~a~P~~~~~l~~~~~  638 (765)
                      ++++||+.+++..+.+
T Consensus       417 ~~~~p~~~~~~~~~~~  432 (437)
T TIGR01982       417 KVAEPFVKRWIRKRLG  432 (437)
T ss_pred             HHHHHHHHHHHHhhcC
Confidence            9999999999876653

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=100.00  E-value=7e-68  Score=599.50  Aligned_cols=382  Identities=42%  Similarity=0.647  Sum_probs=318.0

Q ss_pred             HHHHHHHHHHHhhCCcchhhhHHHhhCccCCCHHHHHHHHhhhhCCCCCChHHHHHHHHHHhCCChhhhhcccCcccccc
Q 004254          224 ALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAA  303 (765)
Q Consensus       224 ~~a~~lr~~l~~LGptfIKlGQ~lStR~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgs  303 (765)
                      ..|++|+++++.|||+|||+||.+|||+|++|+||.++|+.|||++||+|++++.+++++|+|.+++++|++||++|||+
T Consensus        92 ~~a~~L~e~~~~nGg~yIKlGQ~lst~~dllP~Eyv~~L~~LqD~~Pp~~~ee~~~i~e~ElG~~ie~if~~f~~~piaa  171 (538)
T KOG1235|consen   92 SAAERLLELFLRNGGTYIKLGQHLSTRPDLLPKEYVKTLSELQDQAPPFPWEEAFKIFEEELGAPIEDIFSEFDEEPIAA  171 (538)
T ss_pred             HHHHHHHHHHHHcCCeEEEechhhccccccCcHHHHHHHHHHhccCCCCCHHHHHHHHHHHhCCCHHHHHHhcCcchhhh
Confidence            34699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 004254          304 ASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAA  382 (765)
Q Consensus       304 aSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~  382 (765)
                      ||+||||+|++ +|+.|||||||||+++.+..|+.+++.++.+++++.|.     ++|..+++|+++++.+|+||.+||+
T Consensus       172 ASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~-----~~~~~lvdE~~~~L~~ELDF~~EA~  246 (538)
T KOG1235|consen  172 ASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPD-----FDLVWLVDEIAKSLPQELDFTKEAK  246 (538)
T ss_pred             cchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcC-----CchhhHHHHHHhhhHhhcchHHHHH
Confidence            99999999999 79999999999999999999999999999999999885     5799999999999999999999999


Q ss_pred             HHHHHHHhcCCCC---ccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccC
Q 004254          383 NAELFASNFKDMD---YVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHAD  459 (765)
Q Consensus       383 Nl~rf~~~f~~~~---~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~GffHaD  459 (765)
                      |+++|+++|++.+   .|+||+|||++|+++|||||||+|++++|+..++..|+++..++..+.++|++|||.+||||||
T Consensus       247 Nae~~~~~f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~~i~~~gi~~~~i~~~l~~~~~~qIf~~GffHaD  326 (538)
T KOG1235|consen  247 NAERFRENFKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDLDAIDKRGISPHDILNKLVEAYLEQIFKTGFFHAD  326 (538)
T ss_pred             hHHHHHHHHHhcccccceeCCeehhhcCcceEEEEEecCCccCCCHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCccCC
Confidence            9999999999988   8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEeec--CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004254          460 PHPGNIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       460 pHPGNILV~~~--~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l~  537 (765)
                      ||||||+|++.  .+++++++|||+++.+++..|..|+++|++++..|...|.+...++|... +.+...+..++.. +.
T Consensus       327 PHPGNilv~~~~~~~~~ivllDhGl~~~is~~~r~~~~~~~~a~~~~d~~~~~~~~~~~g~~~-d~~~~~fa~~l~~-~~  404 (538)
T KOG1235|consen  327 PHPGNILVRPNPEGDEEIVLLDHGLYAVISHKTRKDYAELWLALVFEDEKAMQALAEQLGLGL-DDLYPLFATALTG-RP  404 (538)
T ss_pred             CCCCcEEEecCCCCCccEEEEcccccccccHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccc-chhhhhhHHHHhC-Cc
Confidence            99999999953  36789999999999999999999999999999977777777777777654 3333333222211 00


Q ss_pred             HHHHHHHHHhhhhhhhhhccCCCC--CCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCChhHHHHHHHHHHHHHHhhcc
Q 004254          538 SFEERLAAQRKEREITTQELGFKK--PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGL  615 (765)
Q Consensus       538 ~~~~~l~~~~~~~~~~~~~~~f~~--~l~~~~~~~~~~~~l~~l~~~l~~l~~~~~i~lP~~~~~l~Ral~~leGi~~~L  615 (765)
                       +....            ..+...  ....++... ........+..++..+.    ++|..+.++.|+...+.|+...+
T Consensus       405 -~~s~~------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~----~~p~~i~li~k~~~l~r~~~~~l  466 (538)
T KOG1235|consen  405 -WDSVI------------GAGITKYLKGLEEDADE-NQKIASAKFPGISQLLR----RMPREILLILKTNDLLRGLSSNL  466 (538)
T ss_pred             -hhhcc------------ccchhhhhhhhhhhhhh-HHHHHHHHhhHHHHHHH----hchHhhhhhcccHHHHHhHHHHh
Confidence             00000            000000  000000000 11222333333443333    35999999999999999988887


Q ss_pred             CCCCC----hHHhHHHHHH
Q 004254          616 DPRFD----ITEIAKPYAM  630 (765)
Q Consensus       616 dP~~d----i~~~a~P~~~  630 (765)
                      .-..+    +...++..++
T Consensus       467 ~~~~~~~~~f~~~~~~~~~  485 (538)
T KOG1235|consen  467 GIPSSLERSFLEMARLCLR  485 (538)
T ss_pred             ccccccchHHHHHHHHHHH
Confidence            65444    4555555554

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=100.00  E-value=3.6e-54  Score=462.84  Aligned_cols=376  Identities=24%  Similarity=0.383  Sum_probs=333.2

Q ss_pred             HHHHHHHHHHHhhCCcchhhhHHHhhCccCCCHHHHHHHHhhhhCCCCCChHHHHHHHHHHhCC-ChhhhhcccCccccc
Q 004254          224 ALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGA-PLDDVFERFDVEPIA  302 (765)
Q Consensus       224 ~~a~~lr~~l~~LGptfIKlGQ~lStR~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~-~~eeiF~~fd~~PIg  302 (765)
                      -|.+.|..+||..||||||+|||+|||.|++|+++|.+|++||.+|+|+++...++.+++++|. .++++|.+|++.|||
T Consensus       119 lW~~~L~kaLE~aGPtFIKLGQWAsTR~DlFs~afC~qLSKLHs~vt~Hs~a~T~k~l~qa~~~~~~~eiF~efn~~PIG  198 (565)
T KOG1236|consen  119 LWLRLLLKALETAGPTFIKLGQWASTRRDLFSKAFCAQLSKLHSNVTPHSFAFTKKKLRQAFGVKKIEEIFSEFNREPIG  198 (565)
T ss_pred             HHHHHHHHHHHhcCCceEEecccccccccccCHHHHHHHHHHhccCCCCchHHHHHHHHHHHCcCcHHHHHHhcCCcccc
Confidence            4678899999999999999999999999999999999999999999999999999999999998 999999999999999


Q ss_pred             ccceeEEEEEEeC-----------------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHH
Q 004254          303 AASLGQVHRARLK-----------------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (765)
Q Consensus       303 saSiGQVhrA~l~-----------------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~  365 (765)
                      +|||||||+|+++                 .+.|||||.||+++++|+.|+.||+..|+..+.+ |..  .-.++...++
T Consensus       199 sG~IAQVY~atl~~a~lekd~~~~~~~~~~tq~~AiKv~Hp~V~~~ir~Dl~Il~f~Akl~~~v-P~l--~wL~l~~~vk  275 (565)
T KOG1236|consen  199 SGCIAQVYRATLKTAYLEKDSGKEYVQKLGTQSCAIKVLHPNVEKQIRLDLGILGFGAKLINNV-PDL--SWLSLPLEVK  275 (565)
T ss_pred             cchhhhhhhhhhhHHHhhcccchhhhcCCccceeeeeccCccHHHHHHHHHHHHhhhhhhhhhc-Ccc--ccccCcchHH
Confidence            9999999999861                 1479999999999999999999999999999854 321  1235677789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCC--CHHHHHHHHH
Q 004254          366 ECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGV--DRKRLGRYAV  443 (765)
Q Consensus       366 E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~--d~~~ia~~li  443 (765)
                      .|.-.+..++|.++||.|+.+|..||.....|.+|+++..+.++.+|+-+|.+|.++.....-.. +.  -.++++..++
T Consensus       276 qF~v~ln~QvdL~~EA~hL~rF~~NF~~s~~V~fP~P~~~~~~~~vl~E~~~~Gl~v~~~v~~~~-~pe~l~kkva~lg~  354 (565)
T KOG1236|consen  276 QFSVGLNAQVDLRQEALHLPRFTNNFSGSKKVLFPKPIAPLHTDLVLVETYERGLSVLRFVKWKS-QPEALVKKVAKLGV  354 (565)
T ss_pred             HHHHHHHhhcchhhhhhhhHHHHHhcccceeecCCcccccccccceeeeeccccccHHhhhhccc-ChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988654222 22  3578888899


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeecCC-----------------------------------------CcEEEEeecc
Q 004254          444 ESYLEQILSHGFFHADPHPGNIAVDDVNG-----------------------------------------GRLIFYDFGM  482 (765)
Q Consensus       444 ~~~L~qi~~~GffHaDpHPGNILV~~~~~-----------------------------------------g~l~LiDFGl  482 (765)
                      +++++|++.++|+|+|+|||||++...++                                         .+++++|-|+
T Consensus       355 ~AllkMl~vDNFvHaDlHPGNVlirf~~t~~~~~~~~~~e~~~~i~~~L~~~~~e~~d~~~~~~~~~~~~P~lvflDtGi  434 (565)
T KOG1236|consen  355 NALLKMLIVDNFVHADLHPGNVLIRFNKTEDNLRGVHKAEKASAIKRGLEWFRSEVRDARFTDSPDLEYEPTLVFLDTGI  434 (565)
T ss_pred             HHHHHHHHhhcceecccCCCcEEEEecCCCccccccccchhhhHHhhhhhhhhhhhhhhhhhccccccCCCeEEEecchh
Confidence            99999999999999999999999985434                                         5799999999


Q ss_pred             eeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCC
Q 004254          483 MGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKP  562 (765)
Q Consensus       483 v~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~f~~~  562 (765)
                      +..++++++.++..+|.|++..|...+.+.+++........|.+.|.+.++.++.....            +.      .
T Consensus       435 v~kLs~qn~~N~l~lF~av~~~~Gy~ag~lml~~Sr~q~~~d~e~F~~kvEklv~~~~s------------t~------s  496 (565)
T KOG1236|consen  435 VTKLSHQNQMNLLSLFRAVARFDGYDAGELMLERSRQQQCIDPERFARKVEKLVLKARS------------TK------S  496 (565)
T ss_pred             hhccChhhHHHHHHHHHHHHHhcchhHHHHHHhhcccccCCCHHHHHHHHHHHHHHhhh------------hc------c
Confidence            99999999999999999999999999999999987777778999888877776654320            00      1


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCChhHHHHHHHHHHHHHHhhccCCCCChHHhHHHHH
Q 004254          563 LSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYA  629 (765)
Q Consensus       563 l~~~~~~~~~~~~l~~l~~~l~~l~~~~~i~lP~~~~~l~Ral~~leGi~~~LdP~~di~~~a~P~~  629 (765)
                              .+..++++++.+++.+++.|++++.++|+.++-+++++||++++|||++|++....+|+
T Consensus       497 --------l~tl~i~~ll~em~tmvreH~V~ids~f~tvvlsilvlEG~gRqLdP~lDl~~~~~~~l  555 (565)
T KOG1236|consen  497 --------LRTLNIGDLLSEMFTMVREHHVRIDSNFTTVVLSILVLEGFGRQLDPDLDLFQLRTFLL  555 (565)
T ss_pred             --------cCcCcHHHHHHHHHHHHHHhheeeccchHHHHHHHHHHhhhccccCCCcchhhhHHHHH
Confidence                    12457899999999999999999999999999999999999999999999999444443

>KOG1234 consensus ABC (ATP binding cassette) 1 protein [General function prediction only]

Probab=100.00  E-value=1.5e-35  Score=305.45  Aligned_cols=348  Identities=24%  Similarity=0.321  Sum_probs=286.6

Q ss_pred             HhhC-ccCCCHHHHHHHHhhhhCCCCCChHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEe-CCeEEEEEEe
Q 004254          247 FSTR-VDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQ  324 (765)
Q Consensus       247 lStR-~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l-~G~~VAVKVq  324 (765)
                      ||.+ ..++|+...+.+++.++.+..||..++.+++..++|.+|.+-|++||..|.+++||||||+|++ +|.+||||+|
T Consensus         2 LSiQD~~ll~p~l~qi~erVrqsAd~MP~~Ql~~vm~~~lG~nW~~Kf~~fd~~P~AaASIGQVHrArl~~g~eVavKiQ   81 (363)
T KOG1234|consen    2 LSIQDGSLLPPTLGQILERVRQSADFMPPKQLEPVMWGELGGNWAQKFSSFDDGPFAAASIGQVHRARLADGPEVAVKIQ   81 (363)
T ss_pred             cccccCCccCHHHHHHHHHhcCccccCChhhhhHHHhhhhchhHHHHHHhhccCccccccHHHHHHHHhcCCCeeeeecC
Confidence            3444 3589999999999999999999999999999999999999999999999999999999999999 8999999999


Q ss_pred             cCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee
Q 004254          325 RPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW  404 (765)
Q Consensus       325 rP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~  404 (765)
                      +||+.+.|+.|+..+..++++-.-+ |+.    .-+...++-.++.+..|+||.+||..+.+|+..+++++.++||.|+.
T Consensus        82 YPGva~sI~SD~~nl~~lLn~s~ll-PkG----LFLd~~i~~ArkEL~~ECDYqrEA~~~~kFr~LLs~~p~f~VP~Vv~  156 (363)
T KOG1234|consen   82 YPGVARSIDSDANNLSRLLNFSGLL-PKG----LFLDVLIEVARKELKWECDYQREAASALKFRPLLSDDPNFYVPRVVD  156 (363)
T ss_pred             CCchhhhccCcHHHHHHHHhhcccc-ccc----ccHHHHHHHHHHhcccccchHHHHHHHhhhHHHhcCCCCcchhHHHH
Confidence            9999999999999999988865432 321    23455677788899999999999999999999999999999999999


Q ss_pred             ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeeccee
Q 004254          405 EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  484 (765)
Q Consensus       405 e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~  484 (765)
                      ++||.++++||++.|.+|.....+.  ...++.|+..++..+++.||...|++.||..+|++++. ...+|.|+|||.++
T Consensus       157 Elct~rvlt~el~~G~pid~~~~~s--Q~~rn~i~~~~l~lcLrEif~f~fMQTDPNWsNFly~~-~tk~i~LlDFGAsr  233 (363)
T KOG1234|consen  157 ELCTVRVLTLELGQGLPIDKTAKLS--QETRNYIGYKLLELCLREIFEFRFMQTDPNWSNFLYNG-RTKKIELLDFGASR  233 (363)
T ss_pred             hhccchhhhhhhhcCccchhhhccc--HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHhccCC-CcceEEEEeccccc
Confidence            9999999999999999998764433  24578999999999999999999999999999999985 56789999999999


Q ss_pred             ccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCc
Q 004254          485 SISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLS  564 (765)
Q Consensus       485 ~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~f~~~l~  564 (765)
                      .++.++-..|++++.+...+|.+.+.+.-.++|+++...  ...      |.+...+.... .-+.-.....++|++   
T Consensus       234 ~y~~~F~d~Y~~~~~aaa~~dr~~v~e~S~~lgfLtg~E--s~~------m~DAHv~sv~i-lgepfa~~~pydF~~---  301 (363)
T KOG1234|consen  234 EYGEKFIDKYIRLLKAAADRDREGVIEMSRELGFLTGYE--SKV------MEDAHVESVMI-LGEPFASDGPYDFGD---  301 (363)
T ss_pred             cccHHHHHHHHHHHHHHHhcchHHHHHHHHHhcccccch--HHH------HHHHhhhHhhh-ccccccCCCCcCcCc---
Confidence            999999999999999999999999999999999987532  111      11111110000 000000012233432   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCh-hHHHHHHHHHHHHHHhhccCCCCChHH
Q 004254          565 KEEKIEKKKQRLAAIGEDLLAIAADQPFRFPA-TFTFVVRAFSVLDGIGKGLDPRFDITE  623 (765)
Q Consensus       565 ~~~~~~~~~~~l~~l~~~l~~l~~~~~i~lP~-~~~~l~Ral~~leGi~~~LdP~~di~~  623 (765)
                               +.+.+-+.++..++.+|++..|| +-+.+.|-+...-=+|..|...+.-.+
T Consensus       302 ---------q~~t~ri~~lipvmL~hRL~pPPeEtYsLHRklsG~fL~cakl~A~v~C~~  352 (363)
T KOG1234|consen  302 ---------QTVTDRIQNLIPVMLRHRLCPPPEETYSLHRKLSGAFLLCAKLGATVPCRD  352 (363)
T ss_pred             ---------cHHHHHHHhhhHHHHhccCCCCcHHHHHHHHHhhhHHHHHHHhcCCCcHHH
Confidence                     34445556777788899988766 677899999999989999988876644

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=99.94  E-value=1.4e-27  Score=223.89  Aligned_cols=118  Identities=49%  Similarity=0.820  Sum_probs=112.9

Q ss_pred             HHhCCChhhhhcccCcccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchH
Q 004254          283 EELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV  361 (765)
Q Consensus       283 ~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~  361 (765)
                      ++||.+++++|++||++|+||||+||||+|++ +|++||||||||++++.+..|+++|+.++++++++.+..   .+++.
T Consensus         1 e~lG~~~~~~F~~fd~~PlasASiaQVh~a~l~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~---~~~~~   77 (119)
T PF03109_consen    1 EELGKPIDEIFDEFDPEPLASASIAQVHRARLKDGEEVAVKVQRPGIEEQIEADLRILRRLARLLERLPPFR---RLDLE   77 (119)
T ss_pred             CCcCCCHHHHHHHCCcchhhheehhhheeeeecccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHccccc---ccCHH
Confidence            47999999999999999999999999999999 799999999999999999999999999999999887642   67999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceee
Q 004254          362 AIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIF  403 (765)
Q Consensus       362 ~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy  403 (765)
                      .+++|+.+.+.+|+||++||+|+++|+++|.+.+.|+||+||
T Consensus        78 ~~~~e~~~~l~~ElDf~~Ea~n~~~~~~~~~~~~~v~vP~vy  119 (119)
T PF03109_consen   78 EIVDEFRDSLLEELDFRREAANLERFRKNFADSPRVYVPKVY  119 (119)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCEecCCCC
Confidence            999999999999999999999999999999999999999987

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.81  E-value=4e-19  Score=178.82  Aligned_cols=180  Identities=17%  Similarity=0.177  Sum_probs=117.8

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .+||+|++|+||+|++ +|+.||||+.+|+.... ..+.+.+.....+...      ....++..+..+         .+
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---------~~   66 (190)
T cd05145           3 GCISTGKEANVYHARTGDGEELAVKIYKTSTLSF-KDRDKYIEGDPRFRSR------YSKSNPRKLVFA---------WA   66 (190)
T ss_pred             ceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceE-eeHHHHhcCCcccccc------cccCCHHHHHHH---------HH
Confidence            5899999999999999 69999999999985432 1111111110000000      001223333222         23


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCH---HHHHHHHHHHHHHHHHh-C
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR---KRLGRYAVESYLEQILS-H  453 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~---~~ia~~li~~~L~qi~~-~  453 (765)
                      ..|.+|+.++.+     +++.+|.++..  ...+|||||++|..+.... +.....+.   ..++..++. .+.++|. .
T Consensus        67 ~~E~~~l~~l~~-----~~i~~p~~~~~--~~~~lVmE~~~g~~~~~~~-l~~~~~~~~~~~~i~~~l~~-~l~~lH~~~  137 (190)
T cd05145          67 EKEFRNLKRLYE-----AGVPVPEPILL--KKNVLVMEFIGDDGSPAPR-LKDVPLEEEEAEELYEQVVE-QMRRLYQEA  137 (190)
T ss_pred             HHHHHHHHHHHh-----CCCCCceEEEe--cCCEEEEEEecCCCchhhh-hhhccCCHHHHHHHHHHHHH-HHHHHHHhC
Confidence            578889988864     46788888853  4569999999998543321 22233332   344444443 3667787 9


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l  513 (765)
                      |++|+||||+||+++   +++++|+|||++..++...-       .+++.+|++.+...+
T Consensus       138 givHrDlkP~NIll~---~~~~~liDFG~a~~~~~~~~-------~~~~~~~~~~~~~~~  187 (190)
T cd05145         138 GLVHGDLSEYNILYH---DGKPYIIDVSQAVELDHPNA-------LEFLRRDIRNINRFF  187 (190)
T ss_pred             CEecCCCChhhEEEE---CCCEEEEEcccceecCCCCH-------HHHHHHHHHHHHHHh
Confidence            999999999999997   68899999999999987532       344567777776654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.79  E-value=1.4e-18  Score=175.60  Aligned_cols=164  Identities=15%  Similarity=0.163  Sum_probs=109.3

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      ..||+|++|+||+|.+ +|++||||+.+|+.......| ..+....++-. .     ....++..++.++.         
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~-~~~~~~~~~~~-~-----~~~~~~~~~~~~~~---------   66 (190)
T cd05147           3 GCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRD-RYVSGEFRFRH-G-----YCKSNPRKMVRTWA---------   66 (190)
T ss_pred             CccccccceEEEEEECCCCCEEEEEEEEecccccccHH-HhhcCCchhhc-c-----ccCCCHHHHHHHHH---------
Confidence            4799999999999999 799999999999764332222 11100111100 0     01234444443332         


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH-HhCC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI-LSHG  454 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi-~~~G  454 (765)
                      .+|++|+.++..     +++..|.++.  +...+|||||++|..+.... +....++...+...+.+  ..+.++ |..|
T Consensus        67 ~~E~~~l~~l~~-----~~v~~p~~~~--~~~~~iVmE~i~g~~l~~~~-~~~~~~~~~~~~~i~~qi~~~L~~l~H~~g  138 (190)
T cd05147          67 EKEMRNLKRLVT-----AGIPCPEPIL--LKSHVLVMEFIGDDGWAAPR-LKDAPLSESKARELYLQVIQIMRILYQDCR  138 (190)
T ss_pred             HHHHHHHHHHHH-----CCCCCCcEEE--ecCCEEEEEEeCCCCCcchh-hhcCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            468889988864     3455676663  45569999999997665432 22334566655555533  557787 6899


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (765)
                      ++|+||||+||+++   +++++|+|||++......
T Consensus       139 iiHrDlkP~NIli~---~~~v~LiDFG~a~~~~~~  170 (190)
T cd05147         139 LVHADLSEYNLLYH---DGKLYIIDVSQSVEHDHP  170 (190)
T ss_pred             cccCCCCHHHEEEE---CCcEEEEEccccccCCCc
Confidence            99999999999997   478999999999876554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.78  E-value=2.3e-18  Score=186.56  Aligned_cols=186  Identities=18%  Similarity=0.179  Sum_probs=132.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      .-||+||||.||+|++  +|.+||||-..-                                  ..+..+..+.+..|+-
T Consensus        16 ~~iG~GsfavVykg~h~~~~~~VAIK~i~~----------------------------------~~l~~k~~e~L~~Ei~   61 (429)
T KOG0595|consen   16 REIGSGSFAVVYKGRHKKSGTEVAIKCIAK----------------------------------KKLNKKLVELLLSEIK   61 (429)
T ss_pred             hhccCcceEEEEEeEeccCCceEEeeeehh----------------------------------hccCHHHHHHHHHHHH
Confidence            4499999999999999  699999996511                                  1112334455666666


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHH--HHHHHHHHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK--RLGRYAVESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~--~ia~~li~~~L~qi~~~G  454 (765)
                      +..|.+          +..-|.+-.+. +..+..+||||||+|+.|+++..... .+++.  +.--..+...++.+++.+
T Consensus        62 iLkel~----------H~nIV~l~d~~-~~~~~i~lVMEyC~gGDLs~yi~~~~-~l~e~t~r~Fm~QLA~alq~L~~~~  129 (429)
T KOG0595|consen   62 ILKELK----------HPNIVRLLDCI-EDDDFIYLVMEYCNGGDLSDYIRRRG-RLPEATARHFMQQLASALQFLHENN  129 (429)
T ss_pred             HHHhcC----------CcceeeEEEEE-ecCCeEEEEEEeCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            665553          21223333333 33567799999999999999764321 22222  222223445577889999


Q ss_pred             ccccCCCCCcEEEeecCC----CcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNG----GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~----g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      |+|||+||.|||+.....    -.+++.|||+++.+.+...       ...+.+.+-||++++...+-+..+.|++++..
T Consensus       130 IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~~-------a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~  202 (429)
T KOG0595|consen  130 IIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGSM-------AETLCGSPLYMAPEVIMSQQYDAKADLWSIGT  202 (429)
T ss_pred             eeeccCCcceEEeccCCCCCCCceEEecccchhhhCCchhH-------HHHhhCCccccCHHHHHhccccchhhHHHHHH
Confidence            999999999999986211    3599999999999996432       34456899999999999999999999999998


Q ss_pred             HHHHHHH
Q 004254          531 TAQFFLN  537 (765)
Q Consensus       531 ~~~~~l~  537 (765)
                      .+..++.
T Consensus       203 Ilyq~l~  209 (429)
T KOG0595|consen  203 ILYQCLT  209 (429)
T ss_pred             HHHHHHh
Confidence            8776654

>smart00090 RIO RIO-like kinase

Probab=99.69  E-value=3.4e-16  Score=163.68  Aligned_cols=186  Identities=19%  Similarity=0.213  Sum_probs=126.8

Q ss_pred             ccccccceeEEEEEE--e-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRAR--L-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~--l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      ++||.|++|+||+|+  . +|++||||+.+++.......+.        +... .+.......++...         .+.
T Consensus        34 ~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~---------~~~   95 (237)
T smart00090       34 GCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDR--------YVDG-DFRFKYRKINPRKL---------VRL   95 (237)
T ss_pred             CeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhh--------hccc-chhhccCCCCHHHH---------HHH
Confidence            589999999999999  3 7999999999886543211100        0000 00000001122211         122


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHH---HHHHHHHHHHHHHHHh
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK---RLGRYAVESYLEQILS  452 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~---~ia~~li~~~L~qi~~  452 (765)
                      .+..|++|+.++..     ..+.+|+++..  +..+|||||++|..+..... .....+..   .++.. +...+.++|.
T Consensus        96 ~~~~E~~~L~~L~~-----~~i~~p~~~~~--~~~~lV~E~~~g~~L~~~~~-~~~~~~~~~~~~i~~q-i~~~l~~LH~  166 (237)
T smart00090       96 WAEKEFRNLQRLYE-----AGVPVPKPIAW--RRNVLVMEFIGGDGLPAPRL-KDVEPEEEEEFELYDD-ILEEMRKLYK  166 (237)
T ss_pred             HHHHHHHHHHHHHh-----cCCCCCeeeEe--cCceEEEEEecCCccccccc-ccCCcchHHHHHHHHH-HHHHHHHHHh
Confidence            45778899998864     25778888853  45799999999988765431 11222222   33333 3355888999


Q ss_pred             CC-ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC
Q 004254          453 HG-FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP  521 (765)
Q Consensus       453 ~G-ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~  521 (765)
                      .| ++|+|+||+||+++   +++++++|||++...++..+       .++..+|...+...+.+.|....
T Consensus       167 ~g~iiH~Dikp~NIli~---~~~i~LiDFg~a~~~~~~~~-------~~~~~~d~~~~~~~~~~~~~~~~  226 (237)
T smart00090      167 EGELVHGDLSEYNILVH---DGKVVIIDVSQSVELDHPMA-------LEFLERDIRNIIRFFRRKGVDEL  226 (237)
T ss_pred             cCCEEeCCCChhhEEEE---CCCEEEEEChhhhccCCcch-------HHHHHHHHHHHHHHHHHcCCCcC
Confidence            99 99999999999997   67899999999998887654       35578999999999999988543

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.69  E-value=8.3e-16  Score=155.26  Aligned_cols=170  Identities=22%  Similarity=0.319  Sum_probs=115.0

Q ss_pred             cccccccceeEEEEEEe-CCeEEEEEEecCCchhh--HHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDL--FDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~--i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      .++||+|++|+||+|.. +|+.||||+.+++....  ...+.+       .+..      ....++         .-..+
T Consensus        20 ~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~-------~~~~------~~~~~~---------~~~~~   77 (198)
T cd05144          20 GNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRD-------YLGD------RKHASW---------LYLSR   77 (198)
T ss_pred             CCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHH-------HHhc------cccchh---------HHHhH
Confidence            37899999999999999 79999999987754211  000000       0000      000011         01123


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCC
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHG  454 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~G  454 (765)
                      ..+..|...+..+..     ..+.+|.++.  ....++||||++|.++.++...    .....++..++.. +.++|..|
T Consensus        78 ~~~~~E~~~l~~l~~-----~~i~v~~~~~--~~~~~lv~e~~~g~~L~~~~~~----~~~~~~~~~i~~~-l~~lh~~g  145 (198)
T cd05144          78 LAAQKEFAALKALYE-----EGFPVPKPID--WNRHAVVMEYIDGVELYRVRVL----EDPEEVLDEILEE-IVKAYKHG  145 (198)
T ss_pred             HHHHHHHHHHHHHHH-----cCCCCCceee--cCCceEEEEEeCCcchhhcccc----ccHHHHHHHHHHH-HHHHHHCC
Confidence            345566666666644     2356787775  3567999999999998775321    2344555554443 57789999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHH----HHHHHHHhh
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL----LEAFYGIYE  503 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l----~~l~~ai~~  503 (765)
                      ++|+|+||+||++++  +++++++|||++..++.+.++.+    ...+++++.
T Consensus       146 i~H~Dl~p~Nill~~--~~~~~liDfg~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (198)
T cd05144         146 IIHGDLSEFNILVDD--DEKIYIIDWPQMVSTDHPNAEELLDRDVENILRFFR  196 (198)
T ss_pred             CCcCCCCcccEEEcC--CCcEEEEECCccccCCCccHHHHHHHHHHHHHHHHh
Confidence            999999999999985  88999999999999999888876    555555443

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.69  E-value=3.8e-16  Score=162.29  Aligned_cols=143  Identities=18%  Similarity=0.311  Sum_probs=105.1

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      ++++.|.+|+||.+..++..+|||+.+|.....-                                 .+...+...--|.
T Consensus        37 ~~l~~~~f~~v~l~~~~~~~~iiKvf~~~~~~~~---------------------------------~~~~~f~~g~~~e   83 (232)
T PRK10359         37 KVFRNIDDTKVSLIDTDYGKYILKVFAPKVKRTE---------------------------------RFLKSFVKGDYYE   83 (232)
T ss_pred             EEecCCCceEEEEEecCCCcEEEEEechhcCchH---------------------------------HHHHhhhhhHHHH
Confidence            7899999999999777788999999988754320                                 0111111122467


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeee--------ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHH
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFW--------EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQI  450 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~--------e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi  450 (765)
                      +||+++.++.+     +++..|..+-        .+++..+|||||++|.+|.++...     +. .. ...+...+.++
T Consensus        84 ~Ea~~l~rL~~-----~GI~~~~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~~-----~~-~~-~~~i~~~l~~l  151 (232)
T PRK10359         84 NLIVQTDRVRS-----EGLASLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMPEI-----SE-DV-KAKIKASIESL  151 (232)
T ss_pred             HHHHHHHHHHH-----CCCCcceEeeeecccccccccCCeEEEEEEECCccHHHhhhc-----cH-HH-HHHHHHHHHHH
Confidence            89999999854     4566666552        235678999999999999886432     22 22 22455678999


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (765)
                      |..|++|+|||||||++++  +| ++|+|||.+.....+
T Consensus       152 H~~gi~H~Dikp~Nili~~--~g-i~liDfg~~~~~~e~  187 (232)
T PRK10359        152 HQHGMVSGDPHKGNFIVSK--NG-LRIIDLSGKRCTAQR  187 (232)
T ss_pred             HHcCCccCCCChHHEEEeC--CC-EEEEECCCcccccch
Confidence            9999999999999999985  67 999999999877543

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.67  E-value=5.6e-17  Score=174.34  Aligned_cols=175  Identities=16%  Similarity=0.205  Sum_probs=127.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      .-||+|+-|.||++++  +|+-+|+|+.+-++.                                   .++.+++.+|++
T Consensus        85 ~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~-----------------------------------~~~~~Qi~rEl~  129 (364)
T KOG0581|consen   85 GVLGSGNGGTVYKVRHKPTGKIYALKVILLNID-----------------------------------PALQKQILRELE  129 (364)
T ss_pred             hhcccCCCcEEEEEEEcCCCeEEEEEeecccCC-----------------------------------HHHHHHHHHHHH
Confidence            5799999999999999  599999998844332                                   345567777877


Q ss_pred             HHHHHH--HHHHHHHhcCCCCccccceeeeccCC-CeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH---HHHHH
Q 004254          377 YTQEAA--NAELFASNFKDMDYVKVPTIFWEYTT-PQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES---YLEQI  450 (765)
Q Consensus       377 f~~EA~--Nl~rf~~~f~~~~~V~vP~vy~e~st-~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~---~L~qi  450 (765)
                      ..++..  ++..|+..|.+             .. ...++||||+|++|+++.... ..+....+ ..++..   -|.++
T Consensus       130 il~~~~spyIV~~ygaF~~-------------~~~~isI~mEYMDgGSLd~~~k~~-g~i~E~~L-~~ia~~VL~GL~YL  194 (364)
T KOG0581|consen  130 ILRSCQSPYIVGFYGAFYS-------------NGEEISICMEYMDGGSLDDILKRV-GRIPEPVL-GKIARAVLRGLSYL  194 (364)
T ss_pred             HHhhCCCCCeeeEeEEEEe-------------CCceEEeehhhcCCCCHHHHHhhc-CCCCHHHH-HHHHHHHHHHHHHH
Confidence            766653  22333322211             23 478999999999999975321 22333333 333333   36778


Q ss_pred             Hh-CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          451 LS-HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       451 ~~-~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      |+ ++++|||+||.||||+.  .|+++|+|||..+.+...    ++..|    -++..||+++=+..+-.+-..|+++|.
T Consensus       195 h~~~~IIHRDIKPsNlLvNs--kGeVKicDFGVS~~lvnS----~a~tf----vGT~~YMsPERi~g~~Ys~~sDIWSLG  264 (364)
T KOG0581|consen  195 HEERKIIHRDIKPSNLLVNS--KGEVKICDFGVSGILVNS----IANTF----VGTSAYMSPERISGESYSVKSDIWSLG  264 (364)
T ss_pred             hhccCeeeccCCHHHeeecc--CCCEEeccccccHHhhhh----hcccc----cccccccChhhhcCCcCCcccceeccc
Confidence            84 99999999999999996  899999999999988765    34443    458899999999988888889999998


Q ss_pred             HHHH
Q 004254          530 RTAQ  533 (765)
Q Consensus       530 ~~~~  533 (765)
                      -.+-
T Consensus       265 Lsll  268 (364)
T KOG0581|consen  265 LSLL  268 (364)
T ss_pred             HHHH
Confidence            6543

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.67  E-value=1.8e-15  Score=158.51  Aligned_cols=186  Identities=20%  Similarity=0.226  Sum_probs=132.4

Q ss_pred             cccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      ++|+. ..+|.||||.||..+.  +|.-+|+|+..-.                                  .+++     
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~----------------------------------~vVk-----   84 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQ----------------------------------KVVK-----   84 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHH----------------------------------HHHH-----
Confidence            35554 6899999999999999  6999999987211                                  0110     


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeee-----ccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHHH
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVE  444 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~-----e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~ia~~li~  444 (765)
                      +.+.-...+|-+-+..          +..|-+..     ...+..+|||||++|+.|..+... ........+.....+-
T Consensus        85 lKQveH~~nEk~vL~~----------v~~PFlv~l~~t~~d~~~lymvmeyv~GGElFS~Lrk~~rF~e~~arFYAAeiv  154 (355)
T KOG0616|consen   85 LKQVEHTHNEKRVLKA----------VSHPFLVKLYGTFKDNSNLYMVMEYVPGGELFSYLRKSGRFSEPHARFYAAEIV  154 (355)
T ss_pred             HHHHHHHhhHHHHHhh----------ccCceeEEEEEeeccCCeEEEEEeccCCccHHHHHHhcCCCCchhHHHHHHHHH
Confidence            0011111222222222          12222221     224567999999999999886532 2223334455555566


Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004254          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (765)
Q Consensus       445 ~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D  524 (765)
                      ..++.+|..++++||+||+|||++.  +|.|++.|||.+++++..+-         .+.+++++++++.+...-....+|
T Consensus       155 lAleylH~~~iiYRDLKPENiLlD~--~G~iKitDFGFAK~v~~rT~---------TlCGTPeYLAPEii~sk~ynkavD  223 (355)
T KOG0616|consen  155 LALEYLHSLDIIYRDLKPENLLLDQ--NGHIKITDFGFAKRVSGRTW---------TLCGTPEYLAPEIIQSKGYNKAVD  223 (355)
T ss_pred             HHHHHHHhcCeeeccCChHHeeecc--CCcEEEEeccceEEecCcEE---------EecCCccccChHHhhcCCCCcchh
Confidence            7789999999999999999999996  89999999999999987632         246899999999999877788899


Q ss_pred             HHHHHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFLNSF  539 (765)
Q Consensus       525 ~~~l~~~~~~~l~~~  539 (765)
                      -++|.-.+++|+..|
T Consensus       224 WWalGVLIYEMlaG~  238 (355)
T KOG0616|consen  224 WWALGVLIYEMLAGY  238 (355)
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999998888877654

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.66  E-value=9.5e-16  Score=170.90  Aligned_cols=195  Identities=20%  Similarity=0.277  Sum_probs=126.5

Q ss_pred             ccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          295 RFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       295 ~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +|+. ++||.|.||+||.|+-  +|+-+|+|+++.       .++--..++                          +.+
T Consensus       142 DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkK-------S~M~~~~Qv--------------------------~hV  188 (550)
T KOG0605|consen  142 DFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKK-------SEMLKKNQV--------------------------EHV  188 (550)
T ss_pred             cchhheeeccccceeEEEEEEccCCcEEeeecccH-------HHHHhhhhH--------------------------HHH
Confidence            5654 8999999999999998  699999998732       111111111                          122


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccC--CCeEEEEeecCCCChhhhhhhhhcCCCHHHHH-HHHHH--HH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKINRIQSLDELGVDRKRLG-RYAVE--SY  446 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s--t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia-~~li~--~~  446 (765)
                      ..|-|.+.|             ...-.|-+.|..+.  ...||+|||++|+.+..+..  ..+.-++..+ -.+++  ..
T Consensus       189 ~aERdiL~~-------------~ds~~vVKLyYsFQD~~~LYLiMEylPGGD~mTLL~--~~~~L~e~~arfYiaE~vlA  253 (550)
T KOG0605|consen  189 RAERDILAE-------------VDSPWVVKLYYSFQDKEYLYLIMEYLPGGDMMTLLM--RKDTLTEDWARFYIAETVLA  253 (550)
T ss_pred             HHHHHHhhh-------------cCCCcEEEEEEEecCCCeeEEEEEecCCccHHHHHH--hcCcCchHHHHHHHHHHHHH
Confidence            223233222             12223445554443  45699999999999887642  2222222222 22233  34


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHH--------------------------------
Q 004254          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL--------------------------------  494 (765)
Q Consensus       447 L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l--------------------------------  494 (765)
                      +..||.+|++|+|+||+|+||+.  .|.|+|.|||++.-+....+..+                                
T Consensus       254 I~~iH~~gyIHRDIKPdNlLiD~--~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (550)
T KOG0605|consen  254 IESIHQLGYIHRDIKPDNLLIDA--KGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRR  331 (550)
T ss_pred             HHHHHHcCcccccCChhheeecC--CCCEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHH
Confidence            67899999999999999999996  89999999999875544322221                                


Q ss_pred             --HHHH-------HHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Q 004254          495 --LEAF-------YGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSF  539 (765)
Q Consensus       495 --~~l~-------~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l~~~  539 (765)
                        .+.+       ..-.-+++++|+++++.-.-....+|-+++...+.++|-.|
T Consensus       332 ~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGy  385 (550)
T KOG0605|consen  332 EQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGY  385 (550)
T ss_pred             HHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHHHHHhCC
Confidence              1111       01124788999999887655677889999999888777554

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.64  E-value=1.6e-15  Score=169.21  Aligned_cols=233  Identities=20%  Similarity=0.263  Sum_probs=150.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +-||.|||.+|++|+.  +++++||||.-..         .|++              ..+.+.+               
T Consensus        79 ~~lGeGSYStV~~A~~~~t~keYAiKVl~K~---------~Iik--------------e~KvkYV---------------  120 (604)
T KOG0592|consen   79 KILGEGSYSTVVLAREKATGKEYAIKVLDKR---------YIIK--------------EKKVKYV---------------  120 (604)
T ss_pred             heeccccceeEEEeeecCCCceeeHhhhhHH---------HHHh--------------hcccchh---------------
Confidence            5699999999999999  6999999987110         0000              0011111               


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhh-hhhcCCCHHHHHHHHHHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQS-LDELGVDRKRLGRYAVESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~-l~~~g~d~~~ia~~li~~~L~qi~~~  453 (765)
                       .+|-..|.++.    ++|+|.  +.|.  +.....|.|+||++++.|-++.. .........+.....+-..++.||..
T Consensus       121 -~~Ek~~l~~L~----~hPgiv--kLy~TFQD~~sLYFvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH~~  193 (604)
T KOG0592|consen  121 -TREKEALTQLS----GHPGIV--KLYFTFQDEESLYFVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLHSN  193 (604)
T ss_pred             -hHHHHHHHHhh----CCCCeE--EEEEEeecccceEEEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc
Confidence             12222333332    344432  3333  33456799999999999888643 11112222233333344558999999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHH-------HHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG-------LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~-------l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~  526 (765)
                      |++|||+||+|||++.  |++++|.|||.++.+++.....       ...-=.+-+-++.+++.++++.-+...+..|++
T Consensus       194 GIIHRDlKPENILLd~--dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiW  271 (604)
T KOG0592|consen  194 GIIHRDLKPENILLDK--DGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLW  271 (604)
T ss_pred             CceeccCChhheeEcC--CCcEEEeeccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchH
Confidence            9999999999999996  9999999999999998876541       111101112357899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCChhHHHHHHHHH
Q 004254          527 AVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFS  606 (765)
Q Consensus       527 ~l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~l~~l~~~l~~l~~~~~i~lP~~~~~l~Ral~  606 (765)
                      +|.-.++.|+..                 ...|...  .+          --++..++.+-+..+=-+|+...-|++-++
T Consensus       272 AlGCilyQmlaG-----------------~PPFra~--Ne----------yliFqkI~~l~y~fp~~fp~~a~dLv~KLL  322 (604)
T KOG0592|consen  272 ALGCILYQMLAG-----------------QPPFRAA--NE----------YLIFQKIQALDYEFPEGFPEDARDLIKKLL  322 (604)
T ss_pred             HHHHHHHHHhcC-----------------CCCCccc--cH----------HHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Confidence            999988777642                 1113211  00          124566777766666667776666666665


Q ss_pred             H
Q 004254          607 V  607 (765)
Q Consensus       607 ~  607 (765)
                      +
T Consensus       323 v  323 (604)
T KOG0592|consen  323 V  323 (604)
T ss_pred             c
Confidence            3

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.64  E-value=1.9e-15  Score=167.08  Aligned_cols=185  Identities=18%  Similarity=0.173  Sum_probs=135.0

Q ss_pred             cccccceeEEEEEEeCCeE-EEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARLKGEE-VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       300 PIgsaSiGQVhrA~l~G~~-VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      -+|+|++|+||+|.++|+. ||||+..+.-...                             ..           +-+|.
T Consensus        48 ~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~-----------------------------~~-----------~~~f~   87 (362)
T KOG0192|consen   48 VLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDD-----------------------------ES-----------RKAFR   87 (362)
T ss_pred             hcccCCceeEEEEEeCCceeEEEEEecchhcCh-----------------------------HH-----------HHHHH
Confidence            3999999999999999988 9999885432111                             00           34677


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHHHHH--HHHHHhCC-
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVESY--LEQILSHG-  454 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~ia~~li~~~--L~qi~~~G-  454 (765)
                      +|+.-+.+++    +..-|.+.-+..+-.....|||||++|++|.++... ....++.......+++..  +.++|..+ 
T Consensus        88 ~E~~il~~l~----HpNIV~f~G~~~~~~~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~  163 (362)
T KOG0192|consen   88 REASLLSRLR----HPNIVQFYGACTSPPGSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGP  163 (362)
T ss_pred             HHHHHHHhCC----CCCeeeEEEEEcCCCCceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence            8887777643    333344444443322246899999999999998755 355677777666665544  78899999 


Q ss_pred             ccccCCCCCcEEEeecCCC-cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH--cCCCCCCCCHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGG-RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ--MGVLVPTGDTTAVRRT  531 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g-~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~--lG~~~~~~D~~~l~~~  531 (765)
                      ++|+|+||.|||++.  ++ .++++|||+++......      ....-..+++.+|++++++  -..++...|+++|.-.
T Consensus       164 iIHrDLK~~NiLv~~--~~~~~KI~DFGlsr~~~~~~------~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIv  235 (362)
T KOG0192|consen  164 IIHRDLKSDNILVDL--KGKTLKIADFGLSREKVISK------TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIV  235 (362)
T ss_pred             eeecccChhhEEEcC--CCCEEEECCCccceeecccc------ccccCCCCCccccChhhhcCCCCcCCccchhhhHHHH
Confidence            999999999999986  65 89999999998766532      0111156889999999999  5577888999998865


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +-+++
T Consensus       236 lWEl~  240 (362)
T KOG0192|consen  236 LWELL  240 (362)
T ss_pred             HHHHH
Confidence            54443

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.63  E-value=6e-15  Score=146.50  Aligned_cols=164  Identities=23%  Similarity=0.262  Sum_probs=106.1

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      ++||+|++|+||+|+. +|++||||+.+|+.......+..++   .......      ...++..+.         ....
T Consensus         3 ~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~---------~~~~   64 (187)
T cd05119           3 GPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRT---GDYRFGR------KKSNWRYLS---------RLWA   64 (187)
T ss_pred             cccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhH---HHHHhcc------CCcchhhhh---------hHHH
Confidence            4799999999999999 6999999999987544322222111   1111111      111222211         1122


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCC-----hhhhhhhhhcCCCHHHHHHHHHHHHHHHHHh
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIK-----INRIQSLDELGVDRKRLGRYAVESYLEQILS  452 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~-----L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~  452 (765)
                      ..|.+++.++..     ..+.+|+++.  +...+|+|||++|..     +.+...    ......++.. +...+..+|.
T Consensus        65 ~~e~~~l~~l~~-----~~~~~~~~~~--~~~~~lv~e~~~g~~~~~~~l~~~~~----~~~~~~~~~~-~~~~l~~lh~  132 (187)
T cd05119          65 EKEFRNLKRLYE-----AGVPVPKPID--LNRHVLVMEFIGGDGIPAPRLKDVRL----LEDPEELYDQ-ILELMRKLYR  132 (187)
T ss_pred             HHHHHHHHHHHH-----cCCCCCceEe--cCCCEEEEEEeCCCCccChhhhhhhh----cccHHHHHHH-HHHHHHHHhh
Confidence            345566666654     2366888875  456799999999943     333211    0223334333 3344667787


Q ss_pred             -CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHH
Q 004254          453 -HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLL  495 (765)
Q Consensus       453 -~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~  495 (765)
                       .|++|+|+||+||+++   ++.++++|||++...+.+....+.
T Consensus       133 ~~~ivH~Dl~p~Nili~---~~~~~liDfg~a~~~~~~~~~~~~  173 (187)
T cd05119         133 EAGLVHGDLSEYNILVD---DGKVYIIDVPQAVEIDHPNAEEFL  173 (187)
T ss_pred             ccCcCcCCCChhhEEEE---CCcEEEEECcccccccCcchHHHH
Confidence             9999999999999997   688999999999998887666554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.61  E-value=1.4e-14  Score=146.57  Aligned_cols=145  Identities=19%  Similarity=0.316  Sum_probs=106.9

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      ++||+|++|.||+|+..|..|+||+..|.....-..|                             ..     .....+.
T Consensus         2 ~~l~~G~~~~vy~~~~~~~~~~vK~~~~~~~~~~~~~-----------------------------~~-----~~~~~~~   47 (211)
T PRK14879          2 KLIKRGAEAEIYLGDFLGIKAVIKWRIPKRYRHPELD-----------------------------ER-----IRRERTR   47 (211)
T ss_pred             cccccCceEEEEEEeeCCCceEEEEeCCcCCcChHHH-----------------------------HH-----HHHHHHH
Confidence            4789999999999999999999999876543221111                             00     1123456


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHA  458 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~GffHa  458 (765)
                      +|++++..+..     +++.+|.++....+..+++|||++|.+|.++.....  .....++..+ ...+.++|..|++|+
T Consensus        48 ~E~~~l~~l~~-----~~i~~p~~~~~~~~~~~lv~e~~~G~~L~~~~~~~~--~~~~~i~~~i-~~~l~~lH~~~i~H~  119 (211)
T PRK14879         48 REARIMSRARK-----AGVNVPAVYFVDPENFIIVMEYIEGEPLKDLINSNG--MEELELSREI-GRLVGKLHSAGIIHG  119 (211)
T ss_pred             HHHHHHHHHHH-----CCCCCCeEEEEeCCCCEEEEEEeCCcCHHHHHHhcc--HHHHHHHHHH-HHHHHHHHhCCcccC
Confidence            77777777653     468889998777788899999999999998753221  1233444443 346788999999999


Q ss_pred             CCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004254          459 DPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (765)
Q Consensus       459 DpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (765)
                      |+||+||+++   ++.++++|||.++..++
T Consensus       120 Dl~p~Nil~~---~~~~~liDf~~a~~~~~  146 (211)
T PRK14879        120 DLTTSNMILS---GGKIYLIDFGLAEFSKD  146 (211)
T ss_pred             CCCcccEEEE---CCCEEEEECCcccCCCc
Confidence            9999999997   67899999999887543

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=1.3e-15  Score=165.16  Aligned_cols=195  Identities=16%  Similarity=0.192  Sum_probs=128.1

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.+|+|.||.|-.|..  +|+.||||+....--.                        +.           +.....+.
T Consensus       177 ~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~------------------------~~-----------s~~~~~~~  221 (475)
T KOG0615|consen  177 SKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKST------------------------GC-----------SRAIAKTR  221 (475)
T ss_pred             eeeecCCceeEEEEEEEcccCcEEEeeeeehhhcc------------------------cc-----------cccccchh
Confidence            46899999999999998  6999999988331100                        00           00111234


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhh-hhhhcCCCHHHHHHHHHHHHHHHHHhCC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQ-SLDELGVDRKRLGRYAVESYLEQILSHG  454 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~-~l~~~g~d~~~ia~~li~~~L~qi~~~G  454 (765)
                      |..+|..-+.++.     +|.|.--+-+-+-....|||||||+|+.|.|.. +....+.+..+..-..+-..++++|+.|
T Consensus       222 ~v~~EieILkkL~-----HP~IV~~~d~f~~~ds~YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~G  296 (475)
T KOG0615|consen  222 DVQNEIEILKKLS-----HPNIVRIKDFFEVPDSSYMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQG  296 (475)
T ss_pred             hhHHHHHHHHhcC-----CCCEEEEeeeeecCCceEEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHHHcC
Confidence            5566776666652     344332222223345569999999999998843 2223333333333334445578899999


Q ss_pred             ccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC---CCCHHHHHH
Q 004254          455 FFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP---TGDTTAVRR  530 (765)
Q Consensus       455 ffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~---~~D~~~l~~  530 (765)
                      +.|||+||+|||+... .+-.+++.|||+++.....   .+++.    ..+++.+++++++.-+-..-   .+|++++.-
T Consensus       297 I~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~~---sfm~T----lCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGc  369 (475)
T KOG0615|consen  297 IIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGEG---SFMKT----LCGTPSYVAPEVLASKGVEYYPSKVDIWSLGC  369 (475)
T ss_pred             cccccCCcceEEeccCCcceEEEecccchhhccccc---eehhh----hcCCccccChhheecCCeecccchheeeeccc
Confidence            9999999999999852 2246999999999988643   23333    45799999999987644333   458888877


Q ss_pred             HHHHHHHHH
Q 004254          531 TAQFFLNSF  539 (765)
Q Consensus       531 ~~~~~l~~~  539 (765)
                      .+...+..|
T Consensus       370 vLfvcLsG~  378 (475)
T KOG0615|consen  370 VLFVCLSGY  378 (475)
T ss_pred             eEEEEeccC
Confidence            665555443

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.59  E-value=1.2e-14  Score=152.60  Aligned_cols=182  Identities=17%  Similarity=0.212  Sum_probs=124.5

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .+|.||+|.||+++.  +|+-||||.-.-.-.                             |     ..+.+...+|+.+
T Consensus         9 kvGEGSYGvV~KCrnk~TgqIVAIKkF~Esed-----------------------------d-----~~VkKIAlREIrm   54 (396)
T KOG0593|consen    9 KVGEGSYGVVMKCRNKDTGQIVAIKKFVESED-----------------------------D-----PVVKKIALREIRM   54 (396)
T ss_pred             ccccCcceEEEEeccCCcccEEEEEeeccCCc-----------------------------c-----HHHHHHHHHHHHH
Confidence            589999999999999  699999996521100                             0     1233444566666


Q ss_pred             HHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhC
Q 004254          378 TQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQILSH  453 (765)
Q Consensus       378 ~~EA~--Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~--~L~qi~~~  453 (765)
                      ....+  |+..+-+.|+.             ..+..||.||||-.-|.++.. ...|.+...+-..+.+.  .++.+|.+
T Consensus        55 LKqLkH~NLVnLiEVFrr-------------krklhLVFE~~dhTvL~eLe~-~p~G~~~~~vk~~l~Q~l~ai~~cHk~  120 (396)
T KOG0593|consen   55 LKQLKHENLVNLIEVFRR-------------KRKLHLVFEYCDHTVLHELER-YPNGVPSELVKKYLYQLLKAIHFCHKN  120 (396)
T ss_pred             HHhcccchHHHHHHHHHh-------------cceeEEEeeecchHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhhhhhhc
Confidence            55543  55555554443             355689999999988887764 34577766665554443  35678899


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      +++|||+||+||||+.  .|.++|+|||.++.++. .-+.|.+.+..-+.+.++.++    .---+.+.+|++++.-.+.
T Consensus       121 n~IHRDIKPENILit~--~gvvKLCDFGFAR~L~~-pgd~YTDYVATRWYRaPELLv----GDtqYG~pVDiWAiGCv~a  193 (396)
T KOG0593|consen  121 NCIHRDIKPENILITQ--NGVVKLCDFGFARTLSA-PGDNYTDYVATRWYRAPELLV----GDTQYGKPVDIWAIGCVFA  193 (396)
T ss_pred             CeecccCChhheEEec--CCcEEeccchhhHhhcC-CcchhhhhhhhhhccChhhhc----ccCcCCCcccchhhhHHHH
Confidence            9999999999999997  89999999999999984 234566655444444443332    1123456789999887655


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       194 El~  196 (396)
T KOG0593|consen  194 ELL  196 (396)
T ss_pred             HHh
Confidence            443

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.59  E-value=1e-14  Score=160.36  Aligned_cols=189  Identities=17%  Similarity=0.168  Sum_probs=121.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+.....                                 -.+....      
T Consensus         7 ~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~---------------------------------~~~~~~~------   47 (363)
T cd05628           7 KVIGRGAFGEVRLVQKKDTGHVYAMKILRKADML---------------------------------EKEQVGH------   47 (363)
T ss_pred             EEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHH---------------------------------HhhHHHH------
Confidence            6799999999999998  5899999987421000                                 0001111      


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec--cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e--~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~  452 (765)
                      +..|...+.++     +++  .+++.+..  .....+|||||++|+.|.+.... ...++...+...+.  -..+..+|.
T Consensus        48 ~~~E~~il~~~-----~~~--~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~aL~~lH~  119 (363)
T cd05628          48 IRAERDILVEA-----DSL--WVVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMK-KDTLTEEETQFYIAETVLAIDSIHQ  119 (363)
T ss_pred             HHHHHHHHHhC-----CCC--CcceEEEEEecCCeEEEEEcCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            22333333222     122  23333332  23457999999999999886532 22344433333222  234788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHH-----------------------------HHHHhh
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEA-----------------------------FYGIYE  503 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l-----------------------------~~ai~~  503 (765)
                      .|++|+|+||.||+++.  ++.++|+|||++..+....+..+...                             ...-..
T Consensus       120 ~givHrDlKp~NILi~~--~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (363)
T cd05628         120 LGFIHRDIKPDNLLLDS--KGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTV  197 (363)
T ss_pred             CCeEecCCCHHHeEECC--CCCEEEeeccCcccccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence            99999999999999986  88999999999987654322111000                             001123


Q ss_pred             cCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          504 KDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       504 ~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +++.++++++...+......|++++.-.+.+++
T Consensus       198 Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell  230 (363)
T cd05628         198 GTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEML  230 (363)
T ss_pred             CCccccCHHHHcCCCCCCchhhhhhHHHHHHHH
Confidence            677889999987777778899999987766654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.58  E-value=8e-14  Score=140.00  Aligned_cols=141  Identities=19%  Similarity=0.228  Sum_probs=102.5

Q ss_pred             ccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 004254          301 IAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQE  380 (765)
Q Consensus       301 IgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~E  380 (765)
                      ||+|++|.||+|.++|.+|+||+..+.....-..|                                  ...+...+.+|
T Consensus         2 ig~G~~~~vy~~~~~~~~~viK~~~~~~~~~~~~~----------------------------------~~~~~~~~~~E   47 (199)
T TIGR03724         2 IAKGAEAIIYLGDFLGLKAVIKERVPKSYRHPELD----------------------------------ERIRRERTRNE   47 (199)
T ss_pred             CCCCceEEEEEeecCCccEEEEEecCCcCcCchHH----------------------------------HHHHHHHHHHH
Confidence            78999999999999999999998755322110000                                  00111245667


Q ss_pred             HHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCC
Q 004254          381 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADP  460 (765)
Q Consensus       381 A~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~GffHaDp  460 (765)
                      .+++..+.+     +++.+|.++.......+++|||++|.++.+......     ..++.. +...+..+|..|++|+|+
T Consensus        48 ~~~l~~l~~-----~~i~~p~~~~~~~~~~~lv~e~~~g~~l~~~~~~~~-----~~~~~~-i~~~l~~lH~~gi~H~Dl  116 (199)
T TIGR03724        48 ARLLSRARK-----AGVNTPVVYDVDPDNKTIVMEYIEGKPLKDVIEEGN-----DELLRE-IGRLVGKLHKAGIVHGDL  116 (199)
T ss_pred             HHHHHHHHH-----CCCCCCEEEEEECCCCEEEEEEECCccHHHHHhhcH-----HHHHHH-HHHHHHHHHHCCeecCCC
Confidence            777777654     457889998877778899999999999988643211     133333 334577899999999999


Q ss_pred             CCCcEEEeecCCCcEEEEeecceeccChh
Q 004254          461 HPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (765)
Q Consensus       461 HPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (765)
                      ||+||+++   +++++++|||+++...+.
T Consensus       117 ~~~Nil~~---~~~~~liDfg~a~~~~~~  142 (199)
T TIGR03724       117 TTSNIIVR---DDKLYLIDFGLGKYSDEI  142 (199)
T ss_pred             CcceEEEE---CCcEEEEECCCCcCCCcH
Confidence            99999997   688999999998876543

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.58  E-value=9.3e-15  Score=157.26  Aligned_cols=191  Identities=18%  Similarity=0.200  Sum_probs=129.7

Q ss_pred             hcccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004254          293 FERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (765)
Q Consensus       293 F~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (765)
                      .+.|+. +.||.||||+|+..+.  +|+-+|+||++..                ..+++                .| .+
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~----------------~iv~~----------------~e-~~   70 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKK----------------KIVEK----------------KE-VR   70 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhh----------------Hhhhh----------------hh-HH
Confidence            345664 7899999999999998  5999999987321                00000                00 11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee-ccCCCeEEEEeecCCCChhhhhh-hhhcCCCHHHHHHHHHHHHH
Q 004254          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQS-LDELGVDRKRLGRYAVESYL  447 (765)
Q Consensus       370 ~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~-e~st~~vLVMEyieG~~L~d~~~-l~~~g~d~~~ia~~li~~~L  447 (765)
                      .+..|      ..-+.++     ++| ..|.-.|. +-..+.+||+||+.|+.|.-..+ -.....++.++...-+-..+
T Consensus        71 ~~~~E------r~IL~~v-----~hP-Fiv~l~ysFQt~~kLylVld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL  138 (357)
T KOG0598|consen   71 HTKAE------RNILSKI-----KHP-FIVKLIYSFQTEEKLYLVLDYLNGGELFYHLQREGRFSEDRARFYLAEIVLAL  138 (357)
T ss_pred             HHHHH------HHHHHhC-----CCC-cEeeeEEecccCCeEEEEEeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHH
Confidence            22222      2222221     222 22333332 33456799999999998876432 22233344455444455678


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceec-cChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004254          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS-ISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~-L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~  526 (765)
                      .++|+.|++|||+||+|||++.  +|.++|.|||+++. +.......-       ..+++++|+++++.-.-....+|-+
T Consensus       139 ~~LH~~gIiyRDlKPENILLd~--~GHi~LtDFgL~k~~~~~~~~t~t-------fcGT~eYmAPEil~~~gy~~~vDWW  209 (357)
T KOG0598|consen  139 GYLHSKGIIYRDLKPENILLDE--QGHIKLTDFGLCKEDLKDGDATRT-------FCGTPEYMAPEILLGKGYDKAVDWW  209 (357)
T ss_pred             HHHHhCCeeeccCCHHHeeecC--CCcEEEeccccchhcccCCCcccc-------ccCCccccChHHHhcCCCCcccchH
Confidence            9999999999999999999996  99999999999984 333222221       4579999999999988888899999


Q ss_pred             HHHHHHHHHHH
Q 004254          527 AVRRTAQFFLN  537 (765)
Q Consensus       527 ~l~~~~~~~l~  537 (765)
                      ++.-.+++|+-
T Consensus       210 sLGillYeML~  220 (357)
T KOG0598|consen  210 SLGILLYEMLT  220 (357)
T ss_pred             hHHHHHHHHhh
Confidence            99988777664

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.58  E-value=2.4e-14  Score=163.61  Aligned_cols=230  Identities=17%  Similarity=0.136  Sum_probs=159.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ..+|.||||.|+.|.+  +++.+|||+++.+.--+ +                               |+++ .      
T Consensus       374 ~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~-~-------------------------------d~Ve-~------  414 (694)
T KOG0694|consen  374 AVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQ-R-------------------------------DEVE-S------  414 (694)
T ss_pred             EEeccCcCceEEEEEEcCCCcEEEEEEeeccceec-c-------------------------------ccHH-H------
Confidence            5799999999999999  58899999996653110 0                               1111 1      


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCcc
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFF  456 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~Gff  456 (765)
                      ...|.+-.+...    .+|-+.--..-++-.++.+.||||+.|+.+..+.+.+.....+.+....-+-..|+.+|++||+
T Consensus       415 ~~~EkrI~~la~----~HPFL~~L~~~fQT~~~l~fvmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~~II  490 (694)
T KOG0694|consen  415 LMCEKRIFELAN----RHPFLVNLFSCFQTKEHLFFVMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHENGII  490 (694)
T ss_pred             HHHHHHHHHHhc----cCCeEeecccccccCCeEEEEEEecCCCcEEEEEecccccHHHHHHHHHHHHHHHHHHHhcCce
Confidence            122333222221    2333332222334445679999999999977766555555556666666677789999999999


Q ss_pred             ccCCCCCcEEEeecCCCcEEEEeecceeccC-hhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          457 HADPHPGNIAVDDVNGGRLIFYDFGMMGSIS-PNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       457 HaDpHPGNILV~~~~~g~l~LiDFGlv~~L~-~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +||+|-+|||++.  +|.++|.||||++.-- ...+       .+...+++++|+++++.-+.++..+|-++|...+++|
T Consensus       491 YRDlKLdNiLLD~--eGh~kiADFGlcKe~m~~g~~-------TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeM  561 (694)
T KOG0694|consen  491 YRDLKLDNLLLDT--EGHVKIADFGLCKEGMGQGDR-------TSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEM  561 (694)
T ss_pred             eeecchhheEEcc--cCcEEecccccccccCCCCCc-------cccccCChhhcChhhhccCcccchhhHHHHHHHHHHH
Confidence            9999999999986  9999999999999754 3333       2335689999999999999999999999999877766


Q ss_pred             HHHHHHHHHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCChhHHHHHHHHHHHH
Q 004254          536 LNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLD  609 (765)
Q Consensus       536 l~~~~~~l~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~l~~l~~~l~~l~~~~~i~lP~~~~~l~Ral~~le  609 (765)
                      +-.                 +..|...  .+          .++++.|+..=..||+.++.+.+-++|.+++-.
T Consensus       562 L~G-----------------q~PF~gd--dE----------ee~FdsI~~d~~~yP~~ls~ea~~il~~ll~k~  606 (694)
T KOG0694|consen  562 LVG-----------------ESPFPGD--DE----------EEVFDSIVNDEVRYPRFLSKEAIAIMRRLLRKN  606 (694)
T ss_pred             HcC-----------------CCCCCCC--CH----------HHHHHHHhcCCCCCCCcccHHHHHHHHHHhccC
Confidence            521                 1123211  11          234455554455689999999999999887644

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.57  E-value=3.2e-15  Score=164.59  Aligned_cols=184  Identities=17%  Similarity=0.234  Sum_probs=125.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +-+|.|+||.||+|+-  +|+.||||-.+..                             .+.|.            |+-
T Consensus        16 ~klGDGTfGsV~la~~~~~~~~VAIK~MK~K-----------------------------f~s~e------------e~~   54 (538)
T KOG0661|consen   16 RKLGDGTFGSVYLAKSKETGELVAIKKMKKK-----------------------------FYSWE------------ECM   54 (538)
T ss_pred             HHhcCCcceeEEEeeecCCCceeeHHHHHhh-----------------------------hccHH------------HHH
Confidence            4689999999999998  6999999944111                             11222            333


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHH--HHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESY--LEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~--L~qi~~~G  454 (765)
                      =.+|.+.+.++.   .+..-|.+-.|+.+-....++|||||+- -|.++...+..-+....+-..+.+.+  |.+||.+|
T Consensus        55 nLREvksL~kln---~hpniikL~Evi~d~~~~L~fVfE~Md~-NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~G  130 (538)
T KOG0661|consen   55 NLREVKSLRKLN---PHPNIIKLKEVIRDNDRILYFVFEFMDC-NLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKHG  130 (538)
T ss_pred             HHHHHHHHHhcC---CCCcchhhHHHhhccCceEeeeHHhhhh-hHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            345555555443   2334466677777766678999999985 35555544433444555544444433  78899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      |||||+||+||||..  ..-|+|.|||+++.+....  .|.+.+-.    -...+-+.|+.-|.++...|++++...+.+
T Consensus       131 fFHRDlKPENiLi~~--~~~iKiaDFGLARev~Skp--PYTeYVST----RWYRAPEvLLrs~~Ys~pvD~wA~GcI~aE  202 (538)
T KOG0661|consen  131 FFHRDLKPENILISG--NDVIKIADFGLAREVRSKP--PYTEYVST----RWYRAPEVLLRSGYYSSPVDMWAVGCIMAE  202 (538)
T ss_pred             cccccCChhheEecc--cceeEecccccccccccCC--Ccchhhhc----ccccchHHhhhccccCCchHHHHHHHHHHH
Confidence            999999999999984  5679999999999885432  23222211    233456778889999999999999876655


Q ss_pred             H
Q 004254          535 F  535 (765)
Q Consensus       535 ~  535 (765)
                      +
T Consensus       203 l  203 (538)
T KOG0661|consen  203 L  203 (538)
T ss_pred             H
Confidence            4

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=1.4e-14  Score=163.83  Aligned_cols=182  Identities=17%  Similarity=0.180  Sum_probs=127.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      .-||.|+||+||+|+.  +|+.||+||.....          |.       +                ...++.+.+|+.
T Consensus        24 ~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~----------l~-------k----------------~~~reKv~~EIe   70 (592)
T KOG0575|consen   24 RFLGKGGFARCYEARDLDTGEVVAVKVVPKKL----------LK-------K----------------PKQREKVLNEIE   70 (592)
T ss_pred             eeeccCcceEEEEEEEcCCCcEEEEEEeehHH----------hc-------C----------------cchHHHHHHHHH
Confidence            6799999999999999  69999999872110          00       0                112334444543


Q ss_pred             HHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004254          377 YTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (765)
Q Consensus       377 f~~EA~--Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~  452 (765)
                      ..+..+  |+..|.+.|             |.+..-|||.|+|+-.+|..+.. ....++..+....+  +-..+.++|.
T Consensus        71 IHr~L~HpnIV~f~~~F-------------EDs~nVYivLELC~~~sL~el~K-rrk~ltEpEary~l~QIv~GlkYLH~  136 (592)
T KOG0575|consen   71 IHRSLKHPNIVQFYHFF-------------EDSNNVYIVLELCHRGSLMELLK-RRKPLTEPEARYFLRQIVEGLKYLHS  136 (592)
T ss_pred             HHHhcCCCcEEeeeeEe-------------ecCCceEEEEEecCCccHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            333321  333333333             34566789999999999999765 23334433332222  3334778899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChh-hHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN-IREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~-~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      +||+|||+|-||+|+++  +-.+++.|||++..+... +|..       -..+++.+++++++.-.-.+..+|++++.-.
T Consensus       137 ~~IiHRDLKLGNlfL~~--~~~VKIgDFGLAt~le~~~Erk~-------TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcv  207 (592)
T KOG0575|consen  137 LGIIHRDLKLGNLFLNE--NMNVKIGDFGLATQLEYDGERKK-------TLCGTPNYIAPEVLNKSGHSFEVDIWSLGCV  207 (592)
T ss_pred             cCceecccchhheeecC--cCcEEecccceeeeecCcccccc-------eecCCCcccChhHhccCCCCCchhhhhhhhH
Confidence            99999999999999986  779999999999999844 4432       2468999999999987667778999999987


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      ++-++
T Consensus       208 mYtLL  212 (592)
T KOG0575|consen  208 MYTLL  212 (592)
T ss_pred             HHhhh
Confidence            76655

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.56  E-value=2.2e-14  Score=155.31  Aligned_cols=182  Identities=19%  Similarity=0.186  Sum_probs=120.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|+||+|+.  +|+.||||+.+......                                       ....-.
T Consensus         7 ~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------------------~~~~~~   47 (333)
T cd05600           7 TQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFK---------------------------------------LNEVRH   47 (333)
T ss_pred             EEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhh---------------------------------------hhHHHH
Confidence            6799999999999999  58999999874321000                                       000112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~G  454 (765)
                      +.+|...+..+.     +++|.-..-+.+.....+|||||++|++|.++.... ..+....+...  .+-..+.++|..|
T Consensus        48 ~~~e~~~l~~~~-----h~~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~lH~~~  121 (333)
T cd05600          48 VLTERDILTTTK-----SEWLVKLLYAFQDDEYLYLAMEYVPGGDFRTLLNNL-GVLSEDHARFYMAEMFEAVDALHELG  121 (333)
T ss_pred             HHHHHHHHHhCC-----CCCCccEEEEEEcCCEEEEEEeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            333443333321     233222222223345679999999999999875321 22333332222  2334478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||.||+++.  ++.++|+|||++.......         .-..+++.++++++......+...|++++...+.+
T Consensus       122 ivH~dlkp~Nil~~~--~~~~kL~Dfg~a~~~~~~~---------~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~e  190 (333)
T cd05600         122 YIHRDLKPENFLIDA--SGHIKLTDFGLSKGIVTYA---------NSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYE  190 (333)
T ss_pred             ccccCCCHHHEEECC--CCCEEEEeCcCCccccccc---------CCcccCccccChhHhcCCCCCCccceecchHHHhh
Confidence            999999999999986  8899999999998765411         11235677888888877777788899999877766


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       191 ll  192 (333)
T cd05600         191 FL  192 (333)
T ss_pred             hh
Confidence            54

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.56  E-value=3.6e-14  Score=145.94  Aligned_cols=185  Identities=19%  Similarity=0.208  Sum_probs=123.0

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      ++||+|++|.||+|.. ++..||+|+.++.....                                         .+.++
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~-----------------------------------------~~~~~   39 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQE-----------------------------------------LKIKF   39 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHH-----------------------------------------HHHHH
Confidence            3689999999999998 68999999875443211                                         11245


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~Gf  455 (765)
                      .+|+..+..+     +++++.-+.-+.......+++|||++|++|.+.........+...+...+.+  ..+..+|..|+
T Consensus        40 ~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~  114 (250)
T cd05085          40 LSEARILKQY-----DHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKNC  114 (250)
T ss_pred             HHHHHHHHhC-----CCCCcCeEEEEEecCCccEEEEECCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            5566555544     2344333333333445679999999999998865433333454444443332  34677899999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|++|+||++++  ++.++++|||++..........     .........++++++...+..+...|++++...+.++
T Consensus       115 ~H~dl~p~nili~~--~~~~~l~d~g~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~  187 (250)
T cd05085         115 IHRDLAARNCLVGE--NNVLKISDFGMSRQEDDGIYSS-----SGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWET  187 (250)
T ss_pred             eecccChheEEEcC--CCeEEECCCccceecccccccc-----CCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHH
Confidence            99999999999986  8899999999987654321100     0001112346778887777777788999988766554


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       188 ~  188 (250)
T cd05085         188 F  188 (250)
T ss_pred             h
Confidence            3

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.56  E-value=1.6e-14  Score=162.12  Aligned_cols=189  Identities=20%  Similarity=0.235  Sum_probs=141.9

Q ss_pred             ChhhhhcccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHH
Q 004254          288 PLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (765)
Q Consensus       288 ~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~  365 (765)
                      ++...|..|  +-||.|+-|-||.|+.  +++.||||..  ++..+                   +              
T Consensus       270 dP~~~y~~~--~kigqgaSG~vy~A~~~~~~~~VaiK~m--~l~~Q-------------------~--------------  312 (550)
T KOG0578|consen  270 DPRSKYTDF--KKIGQGATGGVYVARKISTKQEVAIKRM--DLRKQ-------------------P--------------  312 (550)
T ss_pred             Chhhhhcch--hhhccccccceeeeeeccCCceEEEEEE--EeccC-------------------C--------------
Confidence            334444444  4699999999999998  6899999976  11111                   0              


Q ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH
Q 004254          366 ECASVLYQEIDYTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV  443 (765)
Q Consensus       366 E~~~~l~~ElDf~~EA~--Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li  443 (765)
                       =++-+..|+..+++.+  |+..|.+.|-             +..+.|.||||++|+.|+|+...  ...+..+||...-
T Consensus       313 -~keLilnEi~Vm~~~~H~NiVnfl~Syl-------------v~deLWVVMEym~ggsLTDvVt~--~~~~E~qIA~Icr  376 (550)
T KOG0578|consen  313 -KKELLLNEILVMRDLHHPNIVNFLDSYL-------------VGDELWVVMEYMEGGSLTDVVTK--TRMTEGQIAAICR  376 (550)
T ss_pred             -chhhhHHHHHHHHhccchHHHHHHHHhc-------------ccceeEEEEeecCCCchhhhhhc--ccccHHHHHHHHH
Confidence             0123456666666654  7777766542             13678999999999999998643  3356667766554


Q ss_pred             H--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC
Q 004254          444 E--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP  521 (765)
Q Consensus       444 ~--~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~  521 (765)
                      +  ..|+.+|..|++|+|+|..|||+..  +|.++|.|||+|..++++...      .+-+-+.+.+|+++......+.+
T Consensus       377 e~l~aL~fLH~~gIiHrDIKSDnILL~~--~g~vKltDFGFcaqi~~~~~K------R~TmVGTPYWMAPEVvtrk~YG~  448 (550)
T KOG0578|consen  377 EILQGLKFLHARGIIHRDIKSDNILLTM--DGSVKLTDFGFCAQISEEQSK------RSTMVGTPYWMAPEVVTRKPYGP  448 (550)
T ss_pred             HHHHHHHHHHhcceeeeccccceeEecc--CCcEEEeeeeeeeccccccCc------cccccCCCCccchhhhhhcccCc
Confidence            3  4488899999999999999999986  899999999999999987631      22345799999999999988889


Q ss_pred             CCCHHHHHHHHHHHHH
Q 004254          522 TGDTTAVRRTAQFFLN  537 (765)
Q Consensus       522 ~~D~~~l~~~~~~~l~  537 (765)
                      .+|+++|.-.+-+|++
T Consensus       449 KVDIWSLGIMaIEMve  464 (550)
T KOG0578|consen  449 KVDIWSLGIMAIEMVE  464 (550)
T ss_pred             cccchhhhhHHHHHhc
Confidence            9999999977766654

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.56  E-value=2e-15  Score=166.80  Aligned_cols=193  Identities=17%  Similarity=0.176  Sum_probs=139.0

Q ss_pred             ChhhhhcccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHH
Q 004254          288 PLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (765)
Q Consensus       288 ~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~  365 (765)
                      ++..+|.-|.++.+|||.||.||-|..  +|+.|||||...-                    ++.+              
T Consensus       559 d~stvYQif~devLGSGQFG~VYgg~hRktGrdVAvKvIdKl--------------------rFp~--------------  604 (888)
T KOG4236|consen  559 DISTVYQIFADEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKL--------------------RFPT--------------  604 (888)
T ss_pred             hHHHHHHhhhHhhccCCcceeeecceecccCceeeeeeeecc--------------------cCCC--------------
Confidence            466778888889999999999999999  6999999987110                    1111              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH---H
Q 004254          366 ECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY---A  442 (765)
Q Consensus       366 E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~---l  442 (765)
                            .+|-.+++|..-++.+     ++|+|..-....|...+-+.|||-+.|--|.-+...+.. --++++..-   .
T Consensus       605 ------kqesqlR~EVaILq~l-----~HPGiV~le~M~ET~ervFVVMEKl~GDMLEMILSsEkg-RL~er~TkFlvtQ  672 (888)
T KOG4236|consen  605 ------KQESQLRNEVAILQNL-----HHPGIVNLECMFETPERVFVVMEKLHGDMLEMILSSEKG-RLPERITKFLVTQ  672 (888)
T ss_pred             ------chHHHHHHHHHHHHhc-----CCCCeeEEEEeecCCceEEEEehhhcchHHHHHHHhhcc-cchHHHHHHHHHH
Confidence                  1334456666555544     457777667776766777899999999887766543332 223333332   3


Q ss_pred             HHHHHHHHHhCCccccCCCCCcEEEeecCC-CcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC
Q 004254          443 VESYLEQILSHGFFHADPHPGNIAVDDVNG-GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP  521 (765)
Q Consensus       443 i~~~L~qi~~~GffHaDpHPGNILV~~~~~-g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~  521 (765)
                      +-..|+.+|..+++|+|+||+|||+....+ .+++|+|||.++.+.++.   +.    .-+-+++.+++++++...-...
T Consensus       673 IL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEks---FR----rsVVGTPAYLaPEVLrnkGyNr  745 (888)
T KOG4236|consen  673 ILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKS---FR----RSVVGTPAYLAPEVLRNKGYNR  745 (888)
T ss_pred             HHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecchhh---hh----hhhcCCccccCHHHHhhccccc
Confidence            345588899999999999999999985322 589999999999998752   22    2245799999999988766677


Q ss_pred             CCCHHHHHHHHH
Q 004254          522 TGDTTAVRRTAQ  533 (765)
Q Consensus       522 ~~D~~~l~~~~~  533 (765)
                      ..|++++...++
T Consensus       746 SLDMWSVGVIiY  757 (888)
T KOG4236|consen  746 SLDMWSVGVIIY  757 (888)
T ss_pred             cccceeeeEEEE
Confidence            889988765443

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.56  E-value=1.3e-14  Score=166.22  Aligned_cols=195  Identities=19%  Similarity=0.201  Sum_probs=134.6

Q ss_pred             hcccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          293 FERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       293 F~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      +.++..+-+|.|++|+||+++.  +|+.||||+-++-....                           +        .+.
T Consensus        13 y~W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r---------------------------~--------~e~   57 (732)
T KOG4250|consen   13 YLWEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLR---------------------------P--------RER   57 (732)
T ss_pred             cceeehhhhcCCccceeeeecccccccchhHHhhhhhcccc---------------------------h--------HHH
Confidence            3345567899999999999997  69999999876532100                           0        011


Q ss_pred             HHHHHHHHHHH--HHHHHHHHhcCCCCccccceee--eccCCCeEEEEeecCCCChhhhhhh--hhcCCCHHHHHHHHH-
Q 004254          371 LYQEIDYTQEA--ANAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSL--DELGVDRKRLGRYAV-  443 (765)
Q Consensus       371 l~~ElDf~~EA--~Nl~rf~~~f~~~~~V~vP~vy--~e~st~~vLVMEyieG~~L~d~~~l--~~~g~d~~~ia~~li-  443 (765)
                      ..+|++..+..  .|+.+...         +|..-  .--+...||+||||.|++|.....-  ...|+....+...+. 
T Consensus        58 ~~~EieilkKLnh~NIVk~f~---------iee~~~~~~~~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d  128 (732)
T KOG4250|consen   58 WCREIEILKKLNHPNIVKLFD---------IEETKFLGLVTRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSD  128 (732)
T ss_pred             HHHHHHHHHHcCchhhhhhcc---------cCCccccCcccccceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHH
Confidence            12233322222  13332211         11111  0124567999999999999886543  234666666666554 


Q ss_pred             -HHHHHHHHhCCccccCCCCCcEEEeecCCCc--EEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCC
Q 004254          444 -ESYLEQILSHGFFHADPHPGNIAVDDVNGGR--LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVL  519 (765)
Q Consensus       444 -~~~L~qi~~~GffHaDpHPGNILV~~~~~g~--l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~  519 (765)
                       ...++.++++|++|||+|||||++-...+|+  -+|+|||.++.+++..   .   + .-+-++.++++|.+.+- +..
T Consensus       129 ~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s---~---~-~S~vGT~~YLhPel~E~q~~y  201 (732)
T KOG4250|consen  129 LVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNS---L---F-TSLVGTEEYLHPELYERQKKY  201 (732)
T ss_pred             HHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeecccccccCCCCC---e---e-eeecCchhhcChHHHhhccCc
Confidence             3558889999999999999999998644565  5799999999999875   1   2 22357999999999994 888


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 004254          520 VPTGDTTAVRRTAQFFLNS  538 (765)
Q Consensus       520 ~~~~D~~~l~~~~~~~l~~  538 (765)
                      +..+|.+++...+++....
T Consensus       202 ~~tVDLWS~GvtlY~caTG  220 (732)
T KOG4250|consen  202 TATVDLWSFGVTLYECATG  220 (732)
T ss_pred             CceeehhhhhhHHHHHhcc
Confidence            8899999999888776543

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.56  E-value=2.8e-14  Score=152.09  Aligned_cols=186  Identities=20%  Similarity=0.183  Sum_probs=120.3

Q ss_pred             ccccccceeEEEEEEe------------------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccch
Q 004254          299 EPIAAASLGQVHRARL------------------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDW  360 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l------------------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~  360 (765)
                      +.||+|++|.||+|++                  ++..||||+.++.....                             
T Consensus        11 ~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------   61 (304)
T cd05096          11 EKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKN-----------------------------   61 (304)
T ss_pred             eEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHH-----------------------------
Confidence            5799999999999975                  23479999987653221                             


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc---------
Q 004254          361 VAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL---------  431 (765)
Q Consensus       361 ~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~---------  431 (765)
                                  ...+|.+|.+.+.++.     +++|.-..-+.......+|+|||++|++|.++......         
T Consensus        62 ------------~~~~~~~E~~~l~~l~-----h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~  124 (304)
T cd05096          62 ------------ARNDFLKEVKILSRLK-----DPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGND  124 (304)
T ss_pred             ------------HHHHHHHHHHHHhhcC-----CCCeeEEEEEEecCCceEEEEecCCCCcHHHHHHhcccccccccccc
Confidence                        0123455655555442     23332222222334567999999999999886532110         


Q ss_pred             ---------CCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHH
Q 004254          432 ---------GVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYG  500 (765)
Q Consensus       432 ---------g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~a  500 (765)
                               .+....+...+  +...+..+|..|++|+|+||.||++++  ++.++|+|||++..+........    .+
T Consensus       125 ~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~ivH~dlkp~Nill~~--~~~~kl~DfG~~~~~~~~~~~~~----~~  198 (304)
T cd05096         125 AVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRDLATRNCLVGE--NLTIKIADFGMSRNLYAGDYYRI----QG  198 (304)
T ss_pred             ccccccccccccHHHHHHHHHHHHHHHHHHHHCCccccCcchhheEEcC--CccEEECCCccceecccCceeEe----cC
Confidence                     01112222222  233477899999999999999999986  78999999999987654321100    01


Q ss_pred             HhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          501 IYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       501 i~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      .......+++++....+..++..|++++.-.+.+++
T Consensus       199 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~  234 (304)
T cd05096         199 RAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEIL  234 (304)
T ss_pred             cCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHH
Confidence            111234577888877777888899999987766654

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.55  E-value=3.8e-14  Score=153.76  Aligned_cols=182  Identities=15%  Similarity=0.124  Sum_probs=122.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+..-       +..                          .+.      .-+
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~-------~~~--------------------------~~~------~~~   64 (329)
T PTZ00263         24 ETLGTGSFGRVRIAKHKGTGEYYAIKCLKKRE-------ILK--------------------------MKQ------VQH   64 (329)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHHH-------Hhh--------------------------hhh------HHH
Confidence            7899999999999999  58999999874310       000                          000      012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~G  454 (765)
                      +.+|...+.++.     +++|.-..-+.......+++|||++|++|.+.... ........+...  .+-..+..+|..|
T Consensus        65 ~~~E~~~l~~l~-----hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~  138 (329)
T PTZ00263         65 VAQEKSILMELS-----HPFIVNMMCSFQDENRVYFLLEFVVGGELFTHLRK-AGRFPNDVAKFYHAELVLAFEYLHSKD  138 (329)
T ss_pred             HHHHHHHHHhCC-----CCCCCcEEEEEEcCCEEEEEEcCCCCChHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            344444444432     23332222222345667999999999999875432 122232222221  2234578899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||.||+++.  ++.++|+|||++..++....         ...+.+.++++++......+...|++++...+.+
T Consensus       139 ivH~dlkp~NIll~~--~~~~kl~Dfg~~~~~~~~~~---------~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e  207 (329)
T PTZ00263        139 IIYRDLKPENLLLDN--KGHVKVTDFGFAKKVPDRTF---------TLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYE  207 (329)
T ss_pred             eeecCCCHHHEEECC--CCCEEEeeccCceEcCCCcc---------eecCChhhcCHHHHcCCCCCCcceeechHHHHHH
Confidence            999999999999986  88999999999988765432         1246788999999887777788999999877666


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       208 ll  209 (329)
T PTZ00263        208 FI  209 (329)
T ss_pred             HH
Confidence            54

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.55  E-value=1.7e-14  Score=159.69  Aligned_cols=186  Identities=16%  Similarity=0.142  Sum_probs=132.6

Q ss_pred             cccCc-ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          294 ERFDV-EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      ..|+. +-||.|+||.||+|.+ +|+.||||...++....                                        
T Consensus        75 ~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~----------------------------------------  114 (361)
T KOG1187|consen   75 NNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQG----------------------------------------  114 (361)
T ss_pred             hCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcc----------------------------------------
Confidence            35665 7899999999999999 67999999664432110                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCC-CeEEEEeecCCCChhhhhhhhhc-CCC---HHHHHHHHHHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTT-PQILTMEYVPGIKINRIQSLDEL-GVD---RKRLGRYAVESY  446 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st-~~vLVMEyieG~~L~d~~~l~~~-g~d---~~~ia~~li~~~  446 (765)
                        +-+|.+|...+.+++     ++++.--.-|+...+ +++||+||++.++|.+....... .++   |-+||...+.. 
T Consensus       115 --~~eF~~Ei~~ls~l~-----H~Nlv~LlGyC~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~g-  186 (361)
T KOG1187|consen  115 --EREFLNEVEILSRLR-----HPNLVKLLGYCLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARG-  186 (361)
T ss_pred             --hhHHHHHHHHHhcCC-----CcCcccEEEEEecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHH-
Confidence              123777777776654     234433344444345 48999999999999997654333 333   34555544444 


Q ss_pred             HHHHHhC---CccccCCCCCcEEEeecCCCcEEEEeecceeccCh-hhHHHHHHHHHHHh-hcCHHHHHHHHHHcCCCCC
Q 004254          447 LEQILSH---GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP-NIREGLLEAFYGIY-EKDADKVLQAMVQMGVLVP  521 (765)
Q Consensus       447 L~qi~~~---GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~-~~r~~l~~l~~ai~-~~D~~~i~~~l~~lG~~~~  521 (765)
                      +..+|..   -++|+|+||.|||++.  +...++.|||++...+. ....       ... .++..++++++...|.++.
T Consensus       187 L~yLH~~~~~~iiHrDiKssNILLD~--~~~aKlsDFGLa~~~~~~~~~~-------~~~~~gt~gY~~PEy~~~g~lt~  257 (361)
T KOG1187|consen  187 LAYLHEGCPPPIIHRDIKSSNILLDE--DFNAKLSDFGLAKLGPEGDTSV-------STTVMGTFGYLAPEYASTGKLTE  257 (361)
T ss_pred             HHHHccCCCCCEecCCCCHHHeeECC--CCCEEccCccCcccCCccccce-------eeecCCCCccCChhhhccCCcCc
Confidence            7777764   4999999999999986  89999999999966554 2211       111 5788899999999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 004254          522 TGDTTAVRRTAQFFL  536 (765)
Q Consensus       522 ~~D~~~l~~~~~~~l  536 (765)
                      ..|+++|...+.+++
T Consensus       258 KsDVySFGVvllEli  272 (361)
T KOG1187|consen  258 KSDVYSFGVVLLELI  272 (361)
T ss_pred             ccccccchHHHHHHH
Confidence            999999987665543

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.55  E-value=3.2e-14  Score=143.89  Aligned_cols=176  Identities=25%  Similarity=0.324  Sum_probs=114.1

Q ss_pred             EEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCC--CcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004254          309 VHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD--GAKRDWVAIYDECASVLYQEIDYTQEAANAE  385 (765)
Q Consensus       309 VhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~--~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~  385 (765)
                      ||.|.. +|++||||+-|.+...--.        ........ +...  ..+.+|..+.         .....+|++|+.
T Consensus         2 Vy~~~~~~~~~~a~K~~r~~~~~Fk~--------~~~y~~~~-~r~~~~~~~~~~~~~~---------~~~~~~E~~~L~   63 (188)
T PF01163_consen    2 VYHAIDPDGEEVAVKIYRTGRTSFKR--------RKKYRDYD-YRFKKYRHKSSWRYLI---------REWAKKEFRNLK   63 (188)
T ss_dssp             EEEEEECTTEEEEEEEE-S---SS-H--------HHHHTTTS-TTSTTC--G--CHHHH---------HHHHHHHHHHHH
T ss_pred             EEEEECCCCCEEEEEEeccCceEEEE--------eeeeeccc-chhcccccccCHHHHH---------HHHHHHHHHHHH
Confidence            899998 8999999999887543211        22222211 1110  0122333222         234567889998


Q ss_pred             HHHHhcCCCCccccceeeeccCCCeEEEEeecC--CCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q 004254          386 LFASNFKDMDYVKVPTIFWEYTTPQILTMEYVP--GIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG  463 (765)
Q Consensus       386 rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyie--G~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~GffHaDpHPG  463 (765)
                      ++.+     .++.+|++|.  .++++||||||+  |.++..+........+...+...++..+..++|..|++|+||++.
T Consensus        64 ~l~~-----~Gv~vP~p~~--~~~~~ivME~I~~~G~~~~~l~~~~~~~~~~~~~~~~il~~~~~~~~~~givHGDLs~~  136 (188)
T PF01163_consen   64 RLYE-----AGVPVPKPYD--YNRNVIVMEYIGEDGVPLPRLKDVDLSPEEPKELLEEILEEIIKMLHKAGIVHGDLSEY  136 (188)
T ss_dssp             HCCC-----TT-SS--EEE--EETTEEEEE--EETTEEGGCHHHCGGGGSTHHHHHHHHHHHHHHHHHCTTEEESS-STT
T ss_pred             HHHH-----CCccCCcEEE--EeCCEEEEEecCCCccchhhHHhccccchhHHHHHHHHHHHHHHHHHhcCceecCCChh
Confidence            8754     4688999994  468899999999  988887665443345678888888888888889999999999999


Q ss_pred             cEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004254          464 NIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  519 (765)
Q Consensus       464 NILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~  519 (765)
                      ||++.   ++++++||||.+...+.+.-..+       +.+|...+...+...|..
T Consensus       137 NIlv~---~~~~~iIDf~qav~~~~p~a~~~-------l~RDi~ni~~fF~~~~~~  182 (188)
T PF01163_consen  137 NILVD---DGKVYIIDFGQAVDSSHPNAEEL-------LRRDIENIIRFFKKKGVQ  182 (188)
T ss_dssp             SEEEE---TTCEEE--GTTEEETTSTTHHHH-------HHHHHHHHHHHHHCCC--
T ss_pred             hEEee---cceEEEEecCcceecCCccHHHH-------HHHHHHHHHHHHHHhCCC
Confidence            99998   45999999999998876544333       457888888888887753

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.55  E-value=3.6e-14  Score=146.28  Aligned_cols=186  Identities=19%  Similarity=0.151  Sum_probs=120.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|+||+|++  +|+.||+|+.+......                                   .      +-+
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~-----------------------------------~------~~~   39 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPD-----------------------------------L------KAK   39 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHH-----------------------------------H------HHH
Confidence            3689999999999998  69999999764332111                                   1      113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      |.+|.+.+.++     +++++.-..-+.......++||||++|++|.++........+...+...+.  -..+..+|..|
T Consensus        40 ~~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~  114 (252)
T cd05084          40 FLQEARILKQY-----SHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKH  114 (252)
T ss_pred             HHHHHHHHHhC-----CCCCcceEEEEEcCCCCeEEEEeeccCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            34444433333     223332222222334567999999999999987543332344444333332  23367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|++|+||++++  ++.++|+|||++..+........    .........+++++....+..+...|++++.-.+.+
T Consensus       115 i~H~dl~p~nil~~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e  188 (252)
T cd05084         115 CIHRDLAARNCLVTE--KNVLKISDFGMSREEEDGVYAST----GGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWE  188 (252)
T ss_pred             ccccccchheEEEcC--CCcEEECccccCccccccccccc----CCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHH
Confidence            999999999999985  78999999999887653211100    011112345677888777777778899998876655


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       189 ~~  190 (252)
T cd05084         189 AF  190 (252)
T ss_pred             HH
Confidence            54

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.55  E-value=3.2e-14  Score=154.36  Aligned_cols=184  Identities=14%  Similarity=0.119  Sum_probs=120.3

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .||.|++|+||+|..  +|+.||||+.++.....                                 .+      ....+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~---------------------------------~~------~~~~~   42 (328)
T cd05593           2 LLGKGTFGKVILVREKASGKYYAMKILKKEVIIA---------------------------------KD------EVAHT   42 (328)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hh------HHHHH
Confidence            589999999999998  69999999985421100                                 00      01123


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~Gf  455 (765)
                      .+|.+.+..+     +++++.-...+.......+|||||++|+.|.+.... ...++...+...+  +-..+..+|..|+
T Consensus        43 ~~E~~~l~~l-----~hp~iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~-~~~l~~~~~~~~~~qi~~aL~~LH~~~i  116 (328)
T cd05593          43 LTESRVLKNT-----RHPFLTSLKYSFQTKDRLCFVMEYVNGGELFFHLSR-ERVFSEDRTRFYGAEIVSALDYLHSGKI  116 (328)
T ss_pred             HHHHHHHHhC-----CCCCCcceEEEEEcCCEEEEEEeCCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            3454444433     223332222223345567999999999999775432 1223433333222  2344788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|+||.||+++.  ++.++|+|||++.........      .....+...++++++...+...+..|++++...+.++
T Consensus       117 vHrDikp~NIll~~--~~~~kL~DfG~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el  188 (328)
T cd05593         117 VYRDLKLENLMLDK--DGHIKITDFGLCKEGITDAAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEM  188 (328)
T ss_pred             EecccCHHHeEECC--CCcEEEecCcCCccCCCcccc------cccccCCcCccChhhhcCCCCCccCCccccchHHHHH
Confidence            99999999999986  889999999998764321110      0112467788889988777778889999998776655


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       189 l  189 (328)
T cd05593         189 M  189 (328)
T ss_pred             h
Confidence            4

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.55  E-value=2e-14  Score=159.75  Aligned_cols=187  Identities=19%  Similarity=0.223  Sum_probs=126.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ..||+|+||.|+.|+.  +|+.||||+......                    ...      .     ......+.    
T Consensus        23 ~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~--------------------~~~------~-----~~~~~~i~----   67 (370)
T KOG0583|consen   23 RTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKV--------------------SSK------S-----QKLDELIK----   67 (370)
T ss_pred             eeecCCCCeeEEEeeeccCCCeEEEEEechhcc--------------------ccc------c-----cccchhhH----
Confidence            6899999999999988  699999997633200                    000      0     00111222    


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH---HHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE---SYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~---~~L~qi~~~  453 (765)
                        +|..++++++    .+++|.--.-+.+..+..++||||+.|+.|.+.... ...+. +..++..+.   ..+.++|..
T Consensus        68 --rEi~~~~~~~----~HpnI~~l~ev~~t~~~~~ivmEy~~gGdL~~~i~~-~g~l~-E~~ar~~F~Qlisav~y~H~~  139 (370)
T KOG0583|consen   68 --REISILRRLR----SHPNIIRLLEVFATPTKIYIVMEYCSGGDLFDYIVN-KGRLK-EDEARKYFRQLISAVAYCHSR  139 (370)
T ss_pred             --HHHHHHHHhc----cCCCEeEEEEEEecCCeEEEEEEecCCccHHHHHHH-cCCCC-hHHHHHHHHHHHHHHHHHHhC
Confidence              3445555543    234443333333456668999999999999886543 22222 234444333   347788999


Q ss_pred             CccccCCCCCcEEEeecCC-CcEEEEeecceeccC-hhhHHHHHHHHHHHhhcCHHHHHHHHHHc-C-CCCCCCCHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNG-GRLIFYDFGMMGSIS-PNIREGLLEAFYGIYEKDADKVLQAMVQM-G-VLVPTGDTTAVR  529 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~-g~l~LiDFGlv~~L~-~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G-~~~~~~D~~~l~  529 (765)
                      |++|||+||+||+++.  + +.++|+|||++.... +.   .+    .....+.+.+++++++.. + +-....|++++.
T Consensus       140 gi~HRDLK~ENilld~--~~~~~Kl~DFG~s~~~~~~~---~~----l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~G  210 (370)
T KOG0583|consen  140 GIVHRDLKPENILLDG--NEGNLKLSDFGLSAISPGED---GL----LKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLG  210 (370)
T ss_pred             CEeeCCCCHHHEEecC--CCCCEEEeccccccccCCCC---Cc----ccCCCCCcccCCHHHhCCCCCcCCchhhhhhhH
Confidence            9999999999999986  5 899999999999874 21   11    233467999999999987 5 455678999999


Q ss_pred             HHHHHHHH
Q 004254          530 RTAQFFLN  537 (765)
Q Consensus       530 ~~~~~~l~  537 (765)
                      ..+..++.
T Consensus       211 ViLy~ml~  218 (370)
T KOG0583|consen  211 VILYVLLC  218 (370)
T ss_pred             HHHHHHHh
Confidence            87766654

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.54  E-value=3.3e-14  Score=158.80  Aligned_cols=179  Identities=22%  Similarity=0.217  Sum_probs=130.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.||+|.||+|+.  +++.||+|+...--  .-+.|+                                +.+.+|++
T Consensus         8 e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~g--r~~k~l--------------------------------~~l~~ev~   53 (808)
T KOG0597|consen    8 EMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSG--RNEKEL--------------------------------KNLRQEVR   53 (808)
T ss_pred             HHhcCCccceeeecccccceeEEEEEEehhcC--CchHHH--------------------------------HHHHHHHH
Confidence            5699999999999999  58999999872110  001111                                24556666


Q ss_pred             HHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH---HHHHHHHHH
Q 004254          377 YTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA---VESYLEQIL  451 (765)
Q Consensus       377 f~~EA~--Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l---i~~~L~qi~  451 (765)
                      ..++.+  |+..|.+-|.             -+++.|+|.||+.| .|..+...  .+--+++.++.+   +-..++++|
T Consensus        54 i~r~lkHpniv~m~esfE-------------t~~~~~vVte~a~g-~L~~il~~--d~~lpEe~v~~~a~~LVsaL~yLh  117 (808)
T KOG0597|consen   54 ILRSLKHPNIVEMLESFE-------------TSAHLWVVTEYAVG-DLFTILEQ--DGKLPEEQVRAIAYDLVSALYYLH  117 (808)
T ss_pred             HHHhcCCcchhhHHHhhc-------------ccceEEEEehhhhh-hHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHH
Confidence            666654  6666666554             35677999999999 78776542  222233333332   234588999


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..++.|+|+||.||++..  +|.++++|||+++..+...      .+..-+.+++-||++++.+-+...-..|++++.-.
T Consensus       118 s~rilhrd~kPqniLl~~--~~~~KlcdFg~Ar~m~~~t------~vltsikGtPlYmAPElv~e~pyd~~sDlWslGci  189 (808)
T KOG0597|consen  118 SNRILHRDMKPQNILLEK--GGTLKLCDFGLARAMSTNT------SVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCI  189 (808)
T ss_pred             hcCcccccCCcceeeecC--CCceeechhhhhhhcccCc------eeeeeccCcccccCHHHHcCCCccchhhHHHHHHH
Confidence            999999999999999985  8999999999999887643      23344689999999999998888888899999887


Q ss_pred             HHHH
Q 004254          532 AQFF  535 (765)
Q Consensus       532 ~~~~  535 (765)
                      ++++
T Consensus       190 lYE~  193 (808)
T KOG0597|consen  190 LYEL  193 (808)
T ss_pred             HHHH
Confidence            6654

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.54  E-value=7e-14  Score=151.09  Aligned_cols=185  Identities=22%  Similarity=0.203  Sum_probs=117.9

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .||+|++|+||+|+.  +|+.||||+.++.....   +                             ++. .      .+
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---~-----------------------------~~~-~------~~   42 (320)
T cd05590           2 VLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQ---D-----------------------------DDV-E------CT   42 (320)
T ss_pred             eeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhh---c-----------------------------cHH-H------HH
Confidence            589999999999998  58999999875421100   0                             000 0      11


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~Gf  455 (765)
                      ..|...+...    .++++|.-..-+.+.....++||||++|++|.+.... ...++...+...+  +-..+..+|..|+
T Consensus        43 ~~e~~~l~~~----~~h~~iv~~~~~~~~~~~~~iv~Ey~~~g~L~~~i~~-~~~l~~~~~~~~~~ql~~~L~~lH~~~i  117 (320)
T cd05590          43 MTEKRILSLA----RNHPFLTQLYCCFQTPDRLFFVMEFVNGGDLMFHIQK-SRRFDEARARFYAAEITSALMFLHDKGI  117 (320)
T ss_pred             HHHHHHHHhc----cCCCchhceeeEEEcCCEEEEEEcCCCCchHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            2222222211    1223322111122334567999999999999875432 1233433333322  3345788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|+||+||+++.  ++.++|+|||++.........      .....+++.++++++.......+..|++++...+.++
T Consensus       118 vH~dlkp~NIli~~--~~~~kL~DfG~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el  189 (320)
T cd05590         118 IYRDLKLDNVLLDH--EGHCKLADFGMCKEGIFNGKT------TSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEM  189 (320)
T ss_pred             EeCCCCHHHeEECC--CCcEEEeeCCCCeecCcCCCc------ccccccCccccCHHHHcCCCCCCccchhhhHHHHHHH
Confidence            99999999999986  889999999998754321110      1112467788999988777777888999998776665


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       190 ~  190 (320)
T cd05590         190 L  190 (320)
T ss_pred             h
Confidence            4

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.54  E-value=5.9e-14  Score=149.18  Aligned_cols=180  Identities=20%  Similarity=0.186  Sum_probs=118.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+....-...                                       ....-.
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------------~~~~~~   47 (291)
T cd05612           7 KTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIR---------------------------------------LKQEQH   47 (291)
T ss_pred             eeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhh---------------------------------------hHHHHH
Confidence            6799999999999999  59999999873210000                                       000112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~  452 (765)
                      +.+|...+.++.     +++|  .+++.  ......+++|||++|++|.+..... ..++...+...+  +-..+..+|.
T Consensus        48 ~~~E~~~l~~l~-----hp~i--v~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~  119 (291)
T cd05612          48 VHNEKRVLKEVS-----HPFI--IRLFWTEHDQRFLYMLMEYVPGGELFSYLRNS-GRFSNSTGLFYASEIVCALEYLHS  119 (291)
T ss_pred             HHHHHHHHHhCC-----CCcH--hhhHhhhccCCeEEEEEeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            333443333321     1222  22222  2234568999999999998865322 223333332222  2334788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      .|++|+|++|.||+++.  +|.++|+|||++..+......         ..++..+++++.......+...|++++...+
T Consensus       120 ~~i~H~dlkp~NIli~~--~~~~kl~Dfg~~~~~~~~~~~---------~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il  188 (291)
T cd05612         120 KEIVYRDLKPENILLDK--EGHIKLTDFGFAKKLRDRTWT---------LCGTPEYLAPEVIQSKGHNKAVDWWALGILI  188 (291)
T ss_pred             CCeeecCCCHHHeEECC--CCCEEEEecCcchhccCCccc---------ccCChhhcCHHHHcCCCCCchhhHHHHHHHH
Confidence            99999999999999986  889999999998876543211         2357778888888766667788999998777


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       189 ~~l~  192 (291)
T cd05612         189 YEML  192 (291)
T ss_pred             HHHH
Confidence            6654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.54  E-value=7e-14  Score=147.99  Aligned_cols=185  Identities=16%  Similarity=0.090  Sum_probs=123.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|..  +|+.||||+..+.....                                       ...+..
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~---------------------------------------~~~~~~   46 (285)
T cd05631           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK---------------------------------------RKGEAM   46 (285)
T ss_pred             EEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhh---------------------------------------hhhHHH
Confidence            5799999999999998  69999999873321100                                       011223


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      +.+|.+.+.++.    +..-+.+...+ ......+++|||++|++|.+..... ....+...+...+  +-..+..+|..
T Consensus        47 ~~~E~~il~~l~----~~~iv~~~~~~-~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~  121 (285)
T cd05631          47 ALNEKRILEKVN----SRFVVSLAYAY-ETKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRE  121 (285)
T ss_pred             HHHHHHHHHhcC----CCcEEEEEEEE-ccCCeEEEEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            445555555442    21112222222 3345679999999999997654321 2234444433332  33347888999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|.||++++  ++.++|+|||++..++.....       .-..+...++++++...+..++..|++++...+.
T Consensus       122 ~iiH~dikp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~-------~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~  192 (285)
T cd05631         122 RIVYRDLKPENILLDD--RGHIRISDLGLAVQIPEGETV-------RGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIY  192 (285)
T ss_pred             CEEeCCCCHHHEEECC--CCCEEEeeCCCcEEcCCCCee-------cCCCCCCCccCHhhhcCCCCCcccCchhHHHHHH
Confidence            9999999999999985  789999999999876543211       0123567788898888777788899999987766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       193 el~  195 (285)
T cd05631         193 EMI  195 (285)
T ss_pred             HHH
Confidence            554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.54  E-value=2.7e-14  Score=156.46  Aligned_cols=191  Identities=17%  Similarity=0.161  Sum_probs=120.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+..-       +         .                 -.+....      
T Consensus         7 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-------~---------~-----------------~~~~~~~------   47 (364)
T cd05599           7 KVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSE-------M---------L-----------------EKEQVAH------   47 (364)
T ss_pred             EEEEecCCEEEEEEEECCCCCEEEEEEEEHHH-------h---------h-----------------hhhHHHH------
Confidence            6799999999999999  58999999873210       0         0                 0001111      


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|...+..+.     +++|.-..-+.......+|||||++|++|.++... ...++...+...+  +-..+..+|..|
T Consensus        48 ~~~E~~il~~l~-----h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~l~~-~~~l~~~~~~~~~~qi~~aL~~lH~~~  121 (364)
T cd05599          48 VRAERDILAEAD-----NPWVVKLYYSFQDENYLYLIMEYLPGGDMMTLLMK-KDTFTEEETRFYIAETILAIDSIHKLG  121 (364)
T ss_pred             HHHHHHHHHhCC-----CCCCcceEEEEEcCCeEEEEECCCCCcHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            223333333321     23332222222334567999999999999886532 2223433333322  233478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHH--------------------------------HHHHh
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEA--------------------------------FYGIY  502 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l--------------------------------~~ai~  502 (765)
                      ++|+|+||+||+++.  ++.++|+|||++..+...........                                .....
T Consensus       122 ivH~Dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (364)
T cd05599         122 YIHRDIKPDNLLLDA--KGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYST  199 (364)
T ss_pred             eEeccCCHHHeEECC--CCCEEEeecccceeccccccccccccccccccccccccccccccccccccchhhccccccccc
Confidence            999999999999986  89999999999876643221110000                                00011


Q ss_pred             hcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          503 EKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       503 ~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      .+++.++++++..-+...+..|++++.-.+.+++
T Consensus       200 ~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~  233 (364)
T cd05599         200 VGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEML  233 (364)
T ss_pred             ccCccccCHHHHcCCCCCCeeeeecchhHHHHhh
Confidence            3567888999887766778899999987766554

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.54  E-value=1.6e-14  Score=158.50  Aligned_cols=189  Identities=17%  Similarity=0.180  Sum_probs=119.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|+||+|+.  +|+.||||+.++.-..                                 -.+....      
T Consensus         7 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~---------------------------------~~~~~~~------   47 (360)
T cd05627           7 KVIGRGAFGEVRLVQKKDTGHIYAMKILRKADML---------------------------------EKEQVAH------   47 (360)
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHh---------------------------------hhhhHHH------
Confidence            6899999999999998  5899999988431000                                 0001111      


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~  452 (765)
                      +..|...+..+    . +++  +++.+.  +.....+|||||++|++|.++... ...++...+...+  +-..+..+|.
T Consensus        48 ~~~e~~~l~~l----~-~~~--iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~~L~~lH~  119 (360)
T cd05627          48 IRAERDILVEA----D-GAW--VVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMK-KDTLSEEATQFYIAETVLAIDAIHQ  119 (360)
T ss_pred             HHHHHHHHHhC----C-CCC--EeeEEEEEEcCCEEEEEEeCCCCccHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            22333333322    1 222  333332  233456999999999999886532 2223333332222  2234788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHH-----------------------------HHHHhh
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEA-----------------------------FYGIYE  503 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l-----------------------------~~ai~~  503 (765)
                      .|++|+|+||+||+++.  +|.++|+|||++..+.......+..-                             ......
T Consensus       120 ~givHrDLkp~NIli~~--~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (360)
T cd05627         120 LGFIHRDIKPDNLLLDA--KGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTV  197 (360)
T ss_pred             CCeEccCCCHHHEEECC--CCCEEEeeccCCcccccccccccccccccCCcccccccccccccccccccccccccccccC
Confidence            99999999999999985  89999999999886644322111000                             000123


Q ss_pred             cCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          504 KDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       504 ~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ++..++++++..-.......|++++...+.+++
T Consensus       198 gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~  230 (360)
T cd05627         198 GTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEML  230 (360)
T ss_pred             CCccccCHHHHcCCCCCCcceeccccceeeecc
Confidence            567889999887766777889999887665544

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.54  E-value=4.1e-14  Score=152.93  Aligned_cols=184  Identities=14%  Similarity=0.103  Sum_probs=119.1

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .||.|++|.||+|+.  +|+.||||+.++.....                                 .+      ....+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~------~~~~~   42 (323)
T cd05571           2 LLGKGTFGKVILVREKATGKYYAMKILKKEVIIA---------------------------------KD------EVAHT   42 (323)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hH------HHHHH
Confidence            589999999999998  69999999884321000                                 00      00122


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~Gf  455 (765)
                      ..|.+.+.++     +++++.-..-+.+.....+|||||++|++|.+.... ....+...+...  .+-..++.+|..|+
T Consensus        43 ~~e~~~l~~l-----~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~i  116 (323)
T cd05571          43 LTESRVLQNT-----RHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSR-ERVFSEDRARFYGAEIVSALGYLHSCDV  116 (323)
T ss_pred             HHHHHHHHhC-----CCCCCCCEEEEEEcCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            3344444333     223332222223345567999999999999776432 122333333322  23344788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|+||.||+++.  ++.++|+|||++.........      .....+++.++++++..........|++++.-.+.++
T Consensus       117 vHrDlkp~NIll~~--~~~~kl~DfG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el  188 (323)
T cd05571         117 VYRDLKLENLMLDK--DGHIKITDFGLCKEGISDGAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEM  188 (323)
T ss_pred             EeCCCCHHHEEECC--CCCEEEeeCCCCcccccCCCc------ccceecCccccChhhhcCCCCCccccCcccchhhhhh
Confidence            99999999999986  889999999998754221111      0112467788889888766677788999998766555


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       189 l  189 (323)
T cd05571         189 M  189 (323)
T ss_pred             h
Confidence            4

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.54  E-value=7.8e-14  Score=150.48  Aligned_cols=185  Identities=21%  Similarity=0.159  Sum_probs=117.6

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .||.|++|+||+|+.  +|+.||||+.+++....                                 ++...      .+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~------~~   42 (321)
T cd05591           2 VLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQ---------------------------------DDDVD------CT   42 (321)
T ss_pred             ccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhh---------------------------------hhHHH------HH
Confidence            589999999999998  58899999874421100                                 00000      11


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~Gf  455 (765)
                      ..|.+-+..    ..++++|....-+.+.....+|||||++|++|.+.... ....+...+...+  +-..+..+|..|+
T Consensus        43 ~~e~~il~~----~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~i  117 (321)
T cd05591          43 MTEKRILAL----AAKHPFLTALHCCFQTKDRLFFVMEYVNGGDLMFQIQR-SRKFDEPRSRFYAAEVTLALMFLHRHGV  117 (321)
T ss_pred             HHHHHHHHh----ccCCCCccceeeEEEcCCeEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            223222221    12334332222222334567999999999999775432 2223333333222  3344788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|+||.||+++.  ++.++|+|||++.........      .....+...++++++.......+..|++++...+.++
T Consensus       118 vHrDikp~Nill~~--~~~~kL~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el  189 (321)
T cd05591         118 IYRDLKLDNILLDA--EGHCKLADFGMCKEGILNGVT------TTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEM  189 (321)
T ss_pred             eccCCCHHHeEECC--CCCEEEeecccceecccCCcc------ccccccCccccCHHHHcCCCCCCccceechhHHHHHH
Confidence            99999999999986  889999999998764322111      0112356778889888776777888999998776655


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       190 ~  190 (321)
T cd05591         190 M  190 (321)
T ss_pred             h
Confidence            4

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.54  E-value=2.9e-14  Score=157.90  Aligned_cols=191  Identities=15%  Similarity=0.117  Sum_probs=118.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|+.  +|+.||||+.+.....                                 -.+...      .
T Consensus         7 ~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~---------------------------------~~~~~~------~   47 (381)
T cd05626           7 KTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVL---------------------------------NRNQVA------H   47 (381)
T ss_pred             EEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhh---------------------------------hhHHHH------H
Confidence            5799999999999998  6899999987421000                                 000111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~G  454 (765)
                      +.+|...+.++     ++++|.-..-+.......++||||++|+.|.++.... ...+...+...  .+-..+..+|..|
T Consensus        48 ~~~E~~il~~l-----~h~~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~e~~~~~~~~qi~~aL~~LH~~g  121 (381)
T cd05626          48 VKAERDILAEA-----DNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRM-EVFPEVLARFYIAELTLAIESVHKMG  121 (381)
T ss_pred             HHHHHHHHHhc-----CCCCeeeeEEEEecCCEEEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            33343333332     2233222222223345679999999999998864321 12332222211  2334578899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHH---------------------------------H-----
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLL---------------------------------E-----  496 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~---------------------------------~-----  496 (765)
                      ++|+|+||.||+++.  +++++|+|||++..+.......+.                                 .     
T Consensus       122 ivHrDlKp~Nili~~--~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (381)
T cd05626         122 FIHRDIKPDNILIDL--DGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQ  199 (381)
T ss_pred             eeecCCcHHHEEECC--CCCEEEeeCcCCcccccccccccccccccccccccCcccccccccccccccccchhhcccccc
Confidence            999999999999985  889999999997644211100000                                 0     


Q ss_pred             ---HHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          497 ---AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       497 ---l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                         ....-..+...++++++..-.......|++++.-.+.+++
T Consensus       200 ~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~ell  242 (381)
T cd05626         200 HQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEML  242 (381)
T ss_pred             ccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHHHH
Confidence               0000123667888999887666677889999987776654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.54  E-value=4.4e-14  Score=152.71  Aligned_cols=185  Identities=17%  Similarity=0.142  Sum_probs=117.0

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .||.|++|.||+|+.  +|+.||+|+........                                       -..+.++
T Consensus         2 ~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------------------~~~~~~~   42 (325)
T cd05602           2 VIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILK---------------------------------------KKEEKHI   42 (325)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHh---------------------------------------hhHHHHH
Confidence            589999999999998  58899999874211000                                       0001112


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~Gf  455 (765)
                      ..|...   +...+. +++|.-...+.+.....+++|||++|+.|.+..... .......+...  .+-..+..+|..|+
T Consensus        43 ~~e~~~---~l~~~~-h~~Iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~gi  117 (325)
T cd05602          43 MSERNV---LLKNVK-HPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRE-RCFLEPRARFYAAEIASALGYLHSLNI  117 (325)
T ss_pred             HHHHHH---HHHhCC-CCCCCceeEEEEcCCeEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            222211   112222 233322222223345679999999999998765322 22333322222  23344788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|+||+||+++.  ++.++|+|||++.........      .....+++.++++++...+......|++++...+.++
T Consensus       118 iHrDlkp~Nili~~--~~~~kl~DfG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el  189 (325)
T cd05602         118 VYRDLKPENILLDS--QGHIVLTDFGLCKENIEHNGT------TSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEM  189 (325)
T ss_pred             EecCCCHHHeEECC--CCCEEEccCCCCcccccCCCC------cccccCCccccCHHHHcCCCCCCccccccccHHHHHH
Confidence            99999999999985  889999999998754321110      1112367788999988877777888999998776655


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       190 ~  190 (325)
T cd05602         190 L  190 (325)
T ss_pred             h
Confidence            4

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.54  E-value=4.2e-14  Score=152.82  Aligned_cols=185  Identities=18%  Similarity=0.174  Sum_probs=116.8

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .||.|++|+||+|+.  +|+.||||+.+......                                 .+.      ...+
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~------~~~~   42 (325)
T cd05604           2 VIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLN---------------------------------RKE------QKHI   42 (325)
T ss_pred             ceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhH------HHHH
Confidence            589999999999998  69999999874321100                                 000      0111


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~Gf  455 (765)
                      ..|..   .+.+.+.+ ++|.-..-+.+.....+++|||++|+.|.+.... ...+....+...+  +-..+..+|..|+
T Consensus        43 ~~e~~---~~l~~~~h-p~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~al~~lH~~gi  117 (325)
T cd05604          43 MAERN---VLLKNVKH-PFLVGLHYSFQTTEKLYFVLDFVNGGELFFHLQR-ERSFPEPRARFYAAEIASALGYLHSINI  117 (325)
T ss_pred             HHHHH---HHHHhCCC-CCCccEEEEEecCCEEEEEEcCCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            12211   11122222 3322111122335567999999999998765432 2223333332222  3344788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|+||+||+++.  ++.++|+|||++..........      ....++..++++++...+......|++++...+.++
T Consensus       118 vH~Dlkp~NIll~~--~~~~kL~DfG~~~~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el  189 (325)
T cd05604         118 VYRDLKPENILLDS--QGHVVLTDFGLCKEGIAQSDTT------TTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEM  189 (325)
T ss_pred             eecCCCHHHeEECC--CCCEEEeecCCcccCCCCCCCc------ccccCChhhCCHHHHcCCCCCCcCccccccceehhh
Confidence            99999999999986  8899999999987532211110      112467788999988877777889999988766555


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       190 ~  190 (325)
T cd05604         190 L  190 (325)
T ss_pred             h
Confidence            4

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.53  E-value=8.1e-14  Score=150.34  Aligned_cols=185  Identities=17%  Similarity=0.129  Sum_probs=117.2

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .||.|++|.||+|+.  +|+.||||+.+...... .                               ++. .      .+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~-~-------------------------------~~~-~------~~   42 (316)
T cd05592           2 VLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLE-D-------------------------------DDV-E------CT   42 (316)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh-h-------------------------------hhH-H------HH
Confidence            589999999999998  58899999885432100 0                               000 0      01


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~Gf  455 (765)
                      ..|...+.    ...++++|.-..-+.+.....++||||++|++|.+.... ....+...+...+  +-..+..+|..|+
T Consensus        43 ~~e~~~l~----~~~~hp~i~~~~~~~~~~~~~~lv~e~~~gg~L~~~~~~-~~~~~~~~~~~~~~qi~~al~~LH~~~i  117 (316)
T cd05592          43 MVERRVLA----LAWEHPFLTHLFCTFQTKEHLFFVMEYLNGGDLMFHIQS-SGRFDEARARFYAAEIICGLQFLHKKGI  117 (316)
T ss_pred             HHHHHHHH----hccCCCCccceeeEEEcCCEEEEEEcCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            11111111    111233332222122334567999999999999875432 2234444333322  2334788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|+||.||+++.  ++.++|+|||++.........      .....++..++++++......+...|++++...+.++
T Consensus       118 vH~dlkp~Nill~~--~~~~kL~Dfg~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el  189 (316)
T cd05592         118 IYRDLKLDNVLLDK--DGHIKIADFGMCKENMNGEGK------ASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEM  189 (316)
T ss_pred             EeCCCCHHHeEECC--CCCEEEccCcCCeECCCCCCc------cccccCCccccCHHHHcCCCCCCcccchhHHHHHHHH
Confidence            99999999999986  889999999998765332211      0112357788889888766677888999998776655


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       190 l  190 (316)
T cd05592         190 L  190 (316)
T ss_pred             H
Confidence            4

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.53  E-value=7.9e-15  Score=164.07  Aligned_cols=187  Identities=19%  Similarity=0.276  Sum_probs=130.6

Q ss_pred             CCChhhhhcccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHH
Q 004254          286 GAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAI  363 (765)
Q Consensus       286 G~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i  363 (765)
                      ..+++.+|.+.  .-||.||||-||.|+.  +.+.||||-..-                       ..+  ...-.|.+|
T Consensus        21 k~DPEklf~dL--rEIGHGSFGAVYfArd~~n~evVAIKKMsy-----------------------SGK--Qs~EKWqDI   73 (948)
T KOG0577|consen   21 KDDPEKLFSDL--REIGHGSFGAVYFARDVRNSEVVAIKKMSY-----------------------SGK--QSNEKWQDI   73 (948)
T ss_pred             cCCHHHHHHHH--HHhcCCccceeEEeeccCccceeeeeeccc-----------------------ccc--ccHHHHHHH
Confidence            45778887654  4599999999999999  678999996511                       110  111235544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH
Q 004254          364 YDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV  443 (765)
Q Consensus       364 ~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li  443 (765)
                      +.        |+.|.+.          +.+...|.---+|-. .+..|||||||=| +-+|+......++...+||...-
T Consensus        74 lK--------EVrFL~~----------l~HPntieYkgCyLr-e~TaWLVMEYClG-SAsDlleVhkKplqEvEIAAi~~  133 (948)
T KOG0577|consen   74 LK--------EVRFLRQ----------LRHPNTIEYKGCYLR-EHTAWLVMEYCLG-SASDLLEVHKKPLQEVEIAAITH  133 (948)
T ss_pred             HH--------HHHHHHh----------ccCCCcccccceeec-cchHHHHHHHHhc-cHHHHHHHHhccchHHHHHHHHH
Confidence            43        3334333          223333333333321 2346999999988 45676666666677777776644


Q ss_pred             H--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCC
Q 004254          444 E--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGV  518 (765)
Q Consensus       444 ~--~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~---lG~  518 (765)
                      .  ..|.++|.++.+|+|+|.||||+.+  .|.++|.|||.+...+|...          +-+++.+|+++++-   -|-
T Consensus       134 gaL~gLaYLHS~~~IHRDiKAGNILLse--~g~VKLaDFGSAsi~~PAns----------FvGTPywMAPEVILAMDEGq  201 (948)
T KOG0577|consen  134 GALQGLAYLHSHNRIHRDIKAGNILLSE--PGLVKLADFGSASIMAPANS----------FVGTPYWMAPEVILAMDEGQ  201 (948)
T ss_pred             HHHHHHHHHHHhhHHhhhccccceEecC--CCeeeeccccchhhcCchhc----------ccCCccccchhHheeccccc
Confidence            3  4588999999999999999999997  89999999999998888432          23688999988764   377


Q ss_pred             CCCCCCHHHHHHH
Q 004254          519 LVPTGDTTAVRRT  531 (765)
Q Consensus       519 ~~~~~D~~~l~~~  531 (765)
                      +...+|++++.-.
T Consensus       202 YdgkvDvWSLGIT  214 (948)
T KOG0577|consen  202 YDGKVDVWSLGIT  214 (948)
T ss_pred             cCCccceeeccch
Confidence            8888999988754

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.53  E-value=8.9e-14  Score=150.63  Aligned_cols=86  Identities=15%  Similarity=0.071  Sum_probs=63.3

Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004254          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (765)
Q Consensus       445 ~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D  524 (765)
                      ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+.......    ..+.......+++++....+..+...|
T Consensus       185 ~aL~~LH~~~ivHrDiKp~Nil~~~--~~~~kl~DfG~a~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~sD  258 (338)
T cd05102         185 RGMEFLASRKCIHRDLAARNILLSE--NNVVKICDFGLARDIYKDPDYV----RKGSARLPLKWMAPESIFDKVYTTQSD  258 (338)
T ss_pred             HHHHHHHHCCEECCCCccceEEEcC--CCcEEEeecccccccccCcchh----cccCCCCCccccCcHHhhcCCCCcccC
Confidence            3478899999999999999999986  7899999999998764322110    011112234577888887777788899


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++...+.+++
T Consensus       259 iwslG~il~el~  270 (338)
T cd05102         259 VWSFGVLLWEIF  270 (338)
T ss_pred             HHHHHHHHHHHH
Confidence            999987766554

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.53  E-value=4.4e-15  Score=155.31  Aligned_cols=196  Identities=19%  Similarity=0.281  Sum_probs=142.2

Q ss_pred             HHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCC
Q 004254          276 TAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKS  353 (765)
Q Consensus       276 ~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~  353 (765)
                      +..+.=+..|.++++++|+-..  .+|.||+|.||+|.+  +|+.||||...      ++                    
T Consensus        18 ~~~KLd~~sL~K~PEEVFDi~~--KLGEGSYGSV~KAIH~EsG~v~AIK~VP------V~--------------------   69 (502)
T KOG0574|consen   18 DGFKLDSSALNKPPEEVFDIVG--KLGEGSYGSVHKAIHRESGHVLAIKKVP------VD--------------------   69 (502)
T ss_pred             cccccChhhhcCChHHHHHHHH--HhcCCcchHHHHHHHhccCcEEEEEecC------cc--------------------
Confidence            4455566788899999987654  699999999999999  69999999541      11                    


Q ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeecc--CCCeEEEEeecCCCChhhhhhhhhc
Q 004254          354 DGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY--TTPQILTMEYVPGIKINRIQSLDEL  431 (765)
Q Consensus       354 ~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~--st~~vLVMEyieG~~L~d~~~l~~~  431 (765)
                          .|+.+|+.|+.  +.+++|                   .-+|.+.|..|  .+..|+|||||..++++|+..++..
T Consensus        70 ----sDLQEIIKEIS--IMQQC~-------------------S~yVVKYYGSYFK~sDLWIVMEYCGAGSiSDI~R~R~K  124 (502)
T KOG0574|consen   70 ----TDLQEIIKEIS--IMQQCK-------------------SKYVVKYYGSYFKHSDLWIVMEYCGAGSISDIMRARRK  124 (502)
T ss_pred             ----chHHHHHHHHH--HHHHcC-------------------CchhhhhhhhhccCCceEeehhhcCCCcHHHHHHHhcC
Confidence                13444444332  222221                   11222333333  3678999999999999999988888


Q ss_pred             CCCHHHHHHHHHHHH--HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHH
Q 004254          432 GVDRKRLGRYAVESY--LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV  509 (765)
Q Consensus       432 g~d~~~ia~~li~~~--L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i  509 (765)
                      .+...+|+..+-..+  |+++|...-+|+|+|.||||++.  +|..+|.|||.++.+++.+..      ...+-+.+-+|
T Consensus       125 ~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT--~G~AKLADFGVAGQLTDTMAK------RNTVIGTPFWM  196 (502)
T KOG0574|consen  125 PLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNT--DGIAKLADFGVAGQLTDTMAK------RNTVIGTPFWM  196 (502)
T ss_pred             CccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcc--cchhhhhhccccchhhhhHHh------hCccccCcccc
Confidence            888888887765544  78888888999999999999985  899999999999999886532      12345678888


Q ss_pred             HHHHHH-cCCCCCCCCHHHHHHHHH
Q 004254          510 LQAMVQ-MGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       510 ~~~l~~-lG~~~~~~D~~~l~~~~~  533 (765)
                      ++++++ .|+ ....|.+++.-..-
T Consensus       197 APEVI~EIGY-~~~ADIWSLGITaI  220 (502)
T KOG0574|consen  197 APEVIEEIGY-DTKADIWSLGITAI  220 (502)
T ss_pred             cHHHHHHhcc-chhhhHhhhcchhh
Confidence            888776 455 45568887765443

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.52  E-value=1.1e-13  Score=149.40  Aligned_cols=186  Identities=17%  Similarity=0.086  Sum_probs=120.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+...... .                               .       ....
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~-~-------------------------------~-------~~~~   46 (323)
T cd05616           6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQ-D-------------------------------D-------DVEC   46 (323)
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh-h-------------------------------h-------HHHH
Confidence            5799999999999998  57899999885421100 0                               0       0001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +..|.+.+...    .+++.+....-+.+.....++||||++|++|.+.... ...++...+...+.  -..+..+|..|
T Consensus        47 ~~~e~~~l~~~----~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~  121 (323)
T cd05616          47 TMVEKRVLALS----GKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQ-VGRFKEPHAVFYAAEIAIGLFFLHSKG  121 (323)
T ss_pred             HHHHHHHHHhc----cCCCeEeeEEEEEecCCEEEEEEcCCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            22233322222    2233332222222334557899999999999875432 12234333333322  23477889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||+||++++  ++.++|+|||++.........      .....+++.++++++...+..++..|++++.-.+.+
T Consensus       122 ivHrDlkp~Nill~~--~~~~kL~DfG~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~e  193 (323)
T cd05616         122 IIYRDLKLDNVMLDS--EGHIKIADFGMCKENMWDGVT------TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYE  193 (323)
T ss_pred             EEecCCCHHHeEECC--CCcEEEccCCCceecCCCCCc------cccCCCChhhcCHHHhcCCCCCCccchhchhHHHHH
Confidence            999999999999986  889999999998754321111      111246788899999988888888999999877766


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       194 ll  195 (323)
T cd05616         194 ML  195 (323)
T ss_pred             HH
Confidence            54

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=2e-14  Score=149.80  Aligned_cols=183  Identities=16%  Similarity=0.132  Sum_probs=127.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.||||.||++..  +|..||.|-..=                                  ..+-..-+..+..|++
T Consensus        25 ~~IG~GsFg~vykv~~~~~g~l~a~K~i~f----------------------------------~~md~k~rq~~v~Ei~   70 (375)
T KOG0591|consen   25 KKIGRGSFGEVYKVQCLLDGKLVALKKIQF----------------------------------GMMDAKARQDCVKEIS   70 (375)
T ss_pred             HHHcCCcchheEEeeeccCcchhhhhhcch----------------------------------hhccHHHHHHHHHHHH
Confidence            5799999999999998  799999984311                                  1111223445566777


Q ss_pred             HHHHHH--HHHHHHH-hcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---cCCCHHHHHHHHHHHH--HH
Q 004254          377 YTQEAA--NAELFAS-NFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYAVESY--LE  448 (765)
Q Consensus       377 f~~EA~--Nl~rf~~-~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---~g~d~~~ia~~li~~~--L~  448 (765)
                      ..+..+  |+.++.. .|....            .-..||||||+++.|+.+...-+   .-+..+.+-...++.+  +.
T Consensus        71 lLkQL~HpNIVqYy~~~f~~~~------------evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~  138 (375)
T KOG0591|consen   71 LLKQLNHPNIVQYYAHSFIEDN------------EVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALY  138 (375)
T ss_pred             HHHhcCCchHHHHHHHhhhccc------------hhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHH
Confidence            776665  6666654 343221            11479999999999999654321   1123333333333332  44


Q ss_pred             HHHh--CC--ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004254          449 QILS--HG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (765)
Q Consensus       449 qi~~--~G--ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D  524 (765)
                      .+|.  ..  ++|||+||+||+++.  +|.++|.|||+.+.++.+..  +    .+-.-+++.+|.++.+.-.-..+..|
T Consensus       139 ~cH~~~~r~~VmHRDIKPaNIFl~~--~gvvKLGDfGL~r~l~s~~t--f----A~S~VGTPyYMSPE~i~~~~Y~~kSD  210 (375)
T KOG0591|consen  139 HCHSKIPRGTVMHRDIKPANIFLTA--NGVVKLGDFGLGRFLSSKTT--F----AHSLVGTPYYMSPERIHESGYNFKSD  210 (375)
T ss_pred             HHhccccccceeeccCcchheEEcC--CCceeeccchhHhHhcchhH--H----HHhhcCCCcccCHHHHhcCCCCcchh
Confidence            4554  33  999999999999996  89999999999999987543  2    23345799999999999888889999


Q ss_pred             HHHHHHHHHHH
Q 004254          525 TTAVRRTAQFF  535 (765)
Q Consensus       525 ~~~l~~~~~~~  535 (765)
                      ++++.-.+.++
T Consensus       211 iWslGCllyEM  221 (375)
T KOG0591|consen  211 IWSLGCLLYEM  221 (375)
T ss_pred             HHHHHHHHHHH
Confidence            99998876654

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.52  E-value=6.8e-14  Score=151.08  Aligned_cols=184  Identities=18%  Similarity=0.195  Sum_probs=116.1

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .||.|++|+||+|+.  +|+.||||+..+.....                                 ..      ...++
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~------~~~~~   42 (323)
T cd05575           2 VIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILK---------------------------------KK------EQKHI   42 (323)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhh---------------------------------hh------HHHHH
Confidence            589999999999999  69999999874321000                                 00      00111


Q ss_pred             HHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          378 TQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      ..|...   +.+.+.+ +++ .+-..+ +.....++||||++|++|.+..... ..+....+...+  +-..+..+|..|
T Consensus        43 ~~e~~~---~~~~l~h-p~iv~~~~~~-~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~g  116 (323)
T cd05575          43 MAERNV---LLKNVKH-PFLVGLHYSF-QTADKLYFVLDYVNGGELFFHLQRE-RSFPEPRARFYAAEIASALGYLHSLN  116 (323)
T ss_pred             HHHHHH---HHhhCCC-CCCCCeeEEE-EeCCEEEEEEcCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            222211   1122222 322 222222 3345679999999999997754321 223333332222  334478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||+||+++.  ++.++|+|||++.........      .....+.+.+++++...-+...+..|++++...+.+
T Consensus       117 ivH~dikp~NIll~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~e  188 (323)
T cd05575         117 IIYRDLKPENILLDS--QGHVVLTDFGLCKEGIEHSKT------TSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYE  188 (323)
T ss_pred             eEeCCCCHHHeEECC--CCcEEEeccCCCcccccCCCc------cccccCChhhcChhhhcCCCCCccccccccchhhhh
Confidence            999999999999986  889999999998754221110      011235677888888877767778899999877666


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       189 ll  190 (323)
T cd05575         189 ML  190 (323)
T ss_pred             hh
Confidence            54

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.52  E-value=1.2e-13  Score=149.24  Aligned_cols=187  Identities=14%  Similarity=0.055  Sum_probs=119.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|..  +|+.||||+.++.....                                 .+..+      .
T Consensus         5 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~------~   45 (324)
T cd05589           5 AVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIA---------------------------------RDEVE------S   45 (324)
T ss_pred             EEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhHHH------H
Confidence            5799999999999998  58999999985421000                                 00001      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +..|.+-+..+. .+. +++|.-..-+.+.....++||||++|+.|.....  ...++...+...+.  -..+..+|..|
T Consensus        46 l~~e~~~~~~~~-~l~-hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~~~--~~~l~~~~~~~~~~qi~~al~~lH~~~  121 (324)
T cd05589          46 LMCEKRIFETAN-SER-HPFLVNLFACFQTEDHVCFVMEYAAGGDLMMHIH--TDVFSEPRAVFYAACVVLGLQYLHENK  121 (324)
T ss_pred             HHHHHHHHHhcc-ccC-CCChhceeeEEEcCCEEEEEEcCCCCCcHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            222322222211 122 2332222222234566799999999999876542  22344444333322  23478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||.||+++.  ++.++|+|||++.........      .....+...++++++...+......|++++...+.+
T Consensus       122 ivHrdlkp~Nill~~--~~~~kL~Dfg~~~~~~~~~~~------~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~e  193 (324)
T cd05589         122 IVYRDLKLDNLLLDT--EGFVKIADFGLCKEGMGFGDR------TSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYE  193 (324)
T ss_pred             eEecCCCHHHeEECC--CCcEEeCcccCCccCCCCCCc------ccccccCccccCHhHhcCCCCCcccchhhHHHHHHH
Confidence            999999999999986  889999999998754321110      011235677888888877667778899999877665


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       194 l~  195 (324)
T cd05589         194 ML  195 (324)
T ss_pred             HH
Confidence            54

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.52  E-value=1.2e-13  Score=149.41  Aligned_cols=186  Identities=16%  Similarity=0.095  Sum_probs=118.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ..||.|++|+||+|..  +|+.||||+.+......                                 ++      ..-.
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~------~~~~   46 (323)
T cd05615           6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQ---------------------------------DD------DVEC   46 (323)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hh------HHHH
Confidence            6799999999999998  58999999874311000                                 00      0011


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +..|.+.+...    .+++.+..-..+.+.....+|||||++|++|.+.... ...++...+...+  +-..+..+|..|
T Consensus        47 ~~~e~~~l~~~----~~~~~i~~~~~~~~~~~~~~lv~Ey~~~g~L~~~i~~-~~~l~~~~~~~i~~qi~~al~~lH~~~  121 (323)
T cd05615          47 TMVEKRVLALQ----DKPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQ-VGKFKEPQAVFYAAEISVGLFFLHRRG  121 (323)
T ss_pred             HHHHHHHHHhc----cCCCchhheeeEEecCCEEEEEEcCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            22333333222    2223222111122234567999999999999876432 1223433333332  223478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||+||+++.  ++.++|+|||++.........      .....++..++++++...+..++..|++++.-.+.+
T Consensus       122 ivHrDikp~Nill~~--~~~ikL~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~e  193 (323)
T cd05615         122 IIYRDLKLDNVMLDS--EGHIKIADFGMCKEHMVDGVT------TRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYE  193 (323)
T ss_pred             eeccCCCHHHeEECC--CCCEEEeccccccccCCCCcc------ccCccCCccccCHHHHcCCCCCCccchhhhHHHHHH
Confidence            999999999999986  889999999998764322110      011235678888998887777888999999877666


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       194 ll  195 (323)
T cd05615         194 ML  195 (323)
T ss_pred             HH
Confidence            54

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.52  E-value=1.9e-13  Score=144.39  Aligned_cols=184  Identities=15%  Similarity=0.115  Sum_probs=119.5

Q ss_pred             ccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          301 IAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       301 IgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      ||.|++|.||++..  +|+.||||+........                                 .      ...-.+.
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~---------------------------------~------~~~~~~~   41 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKK---------------------------------R------KGYEGAM   41 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhh---------------------------------h------HHHHHHH
Confidence            68999999999998  68999999863211000                                 0      0001234


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh---hhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l---~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      .|.+.+..+.     ++++....-+.+.....++||||++|++|.+....   ....++...+...+  +-..+..+|..
T Consensus        42 ~E~~il~~l~-----~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~  116 (280)
T cd05608          42 VEKRILAKVH-----SRFIVSLAYAFQTKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQR  116 (280)
T ss_pred             HHHHHHHhCC-----CCcEeeeeEEEcCCCeEEEEEeCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            4555444442     23322222122334567999999999999765421   11223444333322  33447889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|.||++++  ++.++|+|||++..+.......      ....++..+++++....+..+...|++++...+.
T Consensus       117 ~i~H~dlkp~Nili~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~  188 (280)
T cd05608         117 RIIYRDLKPENVLLDN--DGNVRISDLGLAVELKDGQSKT------KGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLY  188 (280)
T ss_pred             CcccCCCCHHHEEECC--CCCEEEeeCccceecCCCCccc------cccCCCcCccCHHHhcCCCCCccccHHHHHHHHH
Confidence            9999999999999985  7899999999998765432210      1123566788888888777777889999987766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       189 el~  191 (280)
T cd05608         189 EMI  191 (280)
T ss_pred             HHH
Confidence            654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.52  E-value=7.7e-14  Score=150.96  Aligned_cols=184  Identities=15%  Similarity=0.120  Sum_probs=118.6

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .||.|++|.||+|+.  +|+.||+|+.++.....                                 .+      ....+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~------~~~~~   42 (323)
T cd05595           2 LLGKGTFGKVILVREKATGRYYAMKILRKEVIIA---------------------------------KD------EVAHT   42 (323)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hH------HHHHH
Confidence            589999999999998  69999999885421100                                 00      00123


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~Gf  455 (765)
                      ..|.+.+..+.     ++++.-..-........+|||||++|++|.+.... ....+...+...+  +-..+..+|..|+
T Consensus        43 ~~E~~~l~~l~-----hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~i  116 (323)
T cd05595          43 VTESRVLQNTR-----HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSR-ERVFTEERARFYGAEIVSALEYLHSRDV  116 (323)
T ss_pred             HHHHHHHHhCC-----CCCCcceeeEEecCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            34444444332     23222111122334567999999999999765432 1223433333322  3334788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|+||.||+++.  ++.++|+|||++.........      .....+++.+++++...-+......|++++...+.++
T Consensus       117 vH~Dlkp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~el  188 (323)
T cd05595         117 VYRDIKLENLMLDK--DGHIKITDFGLCKEGISDGAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEM  188 (323)
T ss_pred             EecCCCHHHEEEcC--CCCEEecccHHhccccCCCCc------cccccCCcCcCCcccccCCCCCchhchhhhHHHHHHH
Confidence            99999999999985  889999999998753221110      0112356778888888777777888999998776665


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       189 l  189 (323)
T cd05595         189 M  189 (323)
T ss_pred             H
Confidence            4

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.51  E-value=6.4e-14  Score=151.42  Aligned_cols=184  Identities=13%  Similarity=0.088  Sum_probs=118.6

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .||+|++|+||+|..  +|+.||||+.++.....                            .           .....+
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~----------------------------~-----------~~~~~~   42 (325)
T cd05594           2 LLGKGTFGKVILVKEKATGRYYAMKILKKEVIVA----------------------------K-----------DEVAHT   42 (325)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh----------------------------h-----------hHHHHH
Confidence            589999999999998  69999999884321000                            0           001122


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh-CC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS-HG  454 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~-~G  454 (765)
                      ..|.+.+..+     ++++|.....+.+.....+|||||++|++|.+.... ...++...+...+  +...+..+|. .|
T Consensus        43 ~~e~~~l~~~-----~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~-~~~l~~~~~~~~~~qi~~aL~~lH~~~~  116 (325)
T cd05594          43 LTENRVLQNS-----RHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSR-ERVFSEDRARFYGAEIVSALDYLHSEKN  116 (325)
T ss_pred             HHHHHHHHhC-----CCCCCCceEEEEEcCCEEEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3344444332     223333222233345567999999999999775432 2223443333332  3344788896 79


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||.||+++.  ++.++|+|||++.........      .....++..++++++...+......|++++...+.+
T Consensus       117 ivHrDikp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e  188 (325)
T cd05594         117 VVYRDLKLENLMLDK--DGHIKITDFGLCKEGIKDGAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE  188 (325)
T ss_pred             EEecCCCCCeEEECC--CCCEEEecCCCCeecCCCCcc------cccccCCcccCCHHHHccCCCCCccccccccceeee
Confidence            999999999999986  889999999998754322111      011236778889998877777788899998766554


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       189 l~  190 (325)
T cd05594         189 MM  190 (325)
T ss_pred             ec
Confidence            43

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.51  E-value=1.3e-13  Score=148.20  Aligned_cols=183  Identities=15%  Similarity=0.121  Sum_probs=118.4

Q ss_pred             ccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          301 IAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       301 IgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      ||.|++|.||+|+.  +|+.||||+.++.....                                 .      .....+.
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~---------------------------------~------~~~~~~~   41 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVS---------------------------------R------SEVTHTL   41 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------h------hHHHHHH
Confidence            68999999999999  58999999874210000                                 0      0011233


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  456 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~Gff  456 (765)
                      .|...+.++     ++++|.-...+.......++||||++|++|.+.... ....+...+...+  +-..+..+|..|++
T Consensus        42 ~E~~~l~~l-----~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~i~  115 (312)
T cd05585          42 AERTVLAQV-----NCPFIVPLKFSFQSPEKLYLVLAFINGGELFHHLQR-EGRFDLSRARFYTAELLCALENLHKFNVI  115 (312)
T ss_pred             HHHHHHHhC-----CCCcEeceeeEEecCCeEEEEEcCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCeE
Confidence            444444443     223332222222334567999999999999876532 2223433333222  23357889999999


Q ss_pred             ccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          457 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       457 HaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      |+|+||.||+++.  ++.++|+|||++.........      .....+...++++++......+...|++++...+.+++
T Consensus       116 HrDlkp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~  187 (312)
T cd05585         116 YRDLKPENILLDY--QGHIALCDFGLCKLNMKDDDK------TNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEML  187 (312)
T ss_pred             eCCCCHHHeEECC--CCcEEEEECcccccCccCCCc------cccccCCcccCCHHHHcCCCCCCccceechhHHHHHHH
Confidence            9999999999985  889999999998764332111      01123567788888887666777889999987766554

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.51  E-value=1.2e-13  Score=147.28  Aligned_cols=197  Identities=17%  Similarity=0.177  Sum_probs=124.5

Q ss_pred             HHhCCChhhhhcccCc-------ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCC
Q 004254          283 EELGAPLDDVFERFDV-------EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKS  353 (765)
Q Consensus       283 ~elG~~~eeiF~~fd~-------~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~  353 (765)
                      +|++.+.+-++...+.       ..||.|++|+||+|..  +|+.||||+.+-...                        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~------------------------   58 (292)
T cd06657           3 EQFRAALQMVVDPGDPRTYLDNFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQ------------------------   58 (292)
T ss_pred             hHhhhhceEeecCCChHHHhhhHHHcCCCCCeEEEEEEEcCCCeEEEEEEecccch------------------------
Confidence            4555555444444433       4699999999999998  699999997521110                        


Q ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCC
Q 004254          354 DGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGV  433 (765)
Q Consensus       354 ~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~  433 (765)
                                        ..+-.+.+|...+..+.    +..-+.....+ ......+++|||++|++|.++...  ...
T Consensus        59 ------------------~~~~~~~~e~~~l~~l~----h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~--~~~  113 (292)
T cd06657          59 ------------------QRRELLFNEVVIMRDYQ----HENVVEMYNSY-LVGDELWVVMEFLEGGALTDIVTH--TRM  113 (292)
T ss_pred             ------------------hHHHHHHHHHHHHHhcC----CcchhheeeEE-EeCCEEEEEEecCCCCcHHHHHhc--CCC
Confidence                              01112344444333331    21112222222 234567999999999999886532  223


Q ss_pred             CHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHH
Q 004254          434 DRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ  511 (765)
Q Consensus       434 d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~  511 (765)
                      +...+...+  +-..+..+|..|++|+|++|.||+++.  ++.++++|||++..+.......      ....++..++.+
T Consensus       114 ~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~~p  185 (292)
T cd06657         114 NEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTH--DGRVKLSDFGFCAQVSKEVPRR------KSLVGTPYWMAP  185 (292)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECC--CCCEEEcccccceecccccccc------cccccCccccCH
Confidence            333333322  233478899999999999999999986  7899999999987765433211      112244556777


Q ss_pred             HHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          512 AMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       512 ~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +....+..++..|++++...+.+++
T Consensus       186 E~~~~~~~~~~~Dv~slGvil~el~  210 (292)
T cd06657         186 ELISRLPYGPEVDIWSLGIMVIEMV  210 (292)
T ss_pred             HHhcCCCCCchhhHHHHHHHHHHHH
Confidence            7776666677789999887665544

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.51  E-value=6.8e-14  Score=150.78  Aligned_cols=185  Identities=18%  Similarity=0.152  Sum_probs=114.7

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .||.|++|+||+|+.  +|+.||||+........                                 ..      .+.++
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~------~~~~~   42 (321)
T cd05603           2 VIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILK---------------------------------KK------EQNHI   42 (321)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHH---------------------------------hh------HHHHH
Confidence            589999999999999  58999999874321000                                 00      00111


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~Gf  455 (765)
                      ..|...   +...+.+ +++.-..-+.+.....++||||++|++|.+.... ...+....+...  .+-..+..+|..|+
T Consensus        43 ~~e~~~---~l~~~~h-~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~i  117 (321)
T cd05603          43 MAERNV---LLKNLKH-PFLVGLHYSFQTAEKLYFVLDYVNGGELFFHLQR-ERCFLEPRARFYAAEVASAIGYLHSLNI  117 (321)
T ss_pred             HHHHHH---HHHhCCC-CCccceeeEEEcCCEEEEEEcCCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            122111   1112222 3222111122334567999999999999765432 122333333222  23344788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|+||.||+++.  +|.++|+|||++.........      .....+...+++++.......+...|++++...+.++
T Consensus       118 vH~Dlkp~NIll~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el  189 (321)
T cd05603         118 IYRDLKPENILLDS--QGHVVLTDFGLCKEGVEPEET------TSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEM  189 (321)
T ss_pred             EeccCCHHHeEECC--CCCEEEccCCCCccCCCCCCc------cccccCCcccCCHHHhcCCCCCCcCcccccchhhhhh
Confidence            99999999999986  889999999998753221110      0112356778888888766677789999998776655


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       190 ~  190 (321)
T cd05603         190 L  190 (321)
T ss_pred             h
Confidence            4

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.51  E-value=5.1e-14  Score=155.21  Aligned_cols=191  Identities=17%  Similarity=0.170  Sum_probs=116.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++||.|++|.||+|+.  +|+.||||+.+..-       .         .                 ..+....      
T Consensus         7 ~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~-------~---------~-----------------~~~~~~~------   47 (376)
T cd05598           7 KTIGIGAFGEVCLVRKVDTNALYAMKTLRKAD-------V---------L-----------------MRNQAAH------   47 (376)
T ss_pred             EEEEeCCCeEEEEEEECCCCCEEEEEEEcHHH-------H---------H-----------------hhhhHHH------
Confidence            6899999999999998  58999999873210       0         0                 0001111      


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~G  454 (765)
                      +.+|..-+.++     ++++|.-.....+.....++||||++|+.|.++.... ..+....+...  .+-..+..+|..|
T Consensus        48 ~~~E~~il~~l-----~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~~-~~~~~~~~~~~~~qi~~al~~lH~~~  121 (376)
T cd05598          48 VKAERDILAEA-----DNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRL-GIFEEDLARFYIAELTCAIESVHKMG  121 (376)
T ss_pred             HHHHHHHHHhC-----CCCCcceEEEEEEcCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            22333333332     2233322222223345679999999999998865321 12222222221  1234578899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChh----------------------------------hHHHHHH---H
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN----------------------------------IREGLLE---A  497 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~----------------------------------~r~~l~~---l  497 (765)
                      ++|+|+||+||+++.  ++.++|+|||++..+...                                  .+.....   .
T Consensus       122 ivHrDlkp~Nill~~--~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (376)
T cd05598         122 FIHRDIKPDNILIDR--DGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRC  199 (376)
T ss_pred             eEeCCCCHHHEEECC--CCCEEEEeCCCCccccccccccccccccccccccccccccccccccccccchhhhhhhhcccc
Confidence            999999999999985  889999999997533100                                  0000000   0


Q ss_pred             HHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          498 FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       498 ~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ......+.+.++++++..........|++++.-.+.+++
T Consensus       200 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell  238 (376)
T cd05598         200 LAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEML  238 (376)
T ss_pred             cccccCCCccccCHHHHcCCCCCcceeeeeccceeeehh
Confidence            001123567788898887766777889999887665554

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=2.9e-14  Score=158.08  Aligned_cols=187  Identities=20%  Similarity=0.232  Sum_probs=118.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +-||.|.|||||+|+.  +|+.||+|-.|=+..+                                  ++|-..+.+|+ 
T Consensus       123 ~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~----------------------------------~~~~~t~~REI-  167 (560)
T KOG0600|consen  123 EKIGEGTYGQVYKARDLETGKIVALKKVRFDNEK----------------------------------EGFPITAIREI-  167 (560)
T ss_pred             HHhcCcchhheeEeeecccCcEEEEEEeecccCC----------------------------------CcchHHHHHHH-
Confidence            3699999999999999  7999999976432211                                  11222222332 


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee-ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~-e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                           .-++++    .+..-|..-.++. ..++..|||.|||+- .|+-+.......++..+|-..+  +-.-+.++|..
T Consensus       168 -----~ILr~l----~HpNIikL~eivt~~~~~siYlVFeYMdh-DL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~~  237 (560)
T KOG0600|consen  168 -----KILRRL----DHPNIIKLEEIVTSKLSGSIYLVFEYMDH-DLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHSR  237 (560)
T ss_pred             -----HHHHhc----CCCcccceeeEEEecCCceEEEEEecccc-hhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhhc
Confidence                 222222    1212222333332 246788999999985 2333322222233433332222  22336778899


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      ||+|||+|..||||+.  +|.++|.|||+++.+++.....|..-+..++.+-++.+    +...-+.+.+|++++.-.+.
T Consensus       238 gvlHRDIK~SNiLidn--~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELL----LG~t~Yg~aVDlWS~GCIl~  311 (560)
T KOG0600|consen  238 GVLHRDIKGSNILIDN--NGVLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELL----LGATSYGTAVDLWSVGCILA  311 (560)
T ss_pred             CeeeccccccceEEcC--CCCEEeccccceeeccCCCCcccccceEEeeccChHHh----cCCcccccceeehhhhHHHH
Confidence            9999999999999985  89999999999999998887777666666666655433    23334566788888887665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       312 El~  314 (560)
T KOG0600|consen  312 ELF  314 (560)
T ss_pred             HHH
Confidence            543

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.51  E-value=1.7e-13  Score=147.87  Aligned_cols=183  Identities=20%  Similarity=0.174  Sum_probs=117.7

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .||.|++|.||+|+.  +|+.||||+.++..... ..+                                ..      .+
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~-~~~--------------------------------~~------~~   42 (316)
T cd05620           2 VLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLI-DDD--------------------------------VE------CT   42 (316)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh-cch--------------------------------HH------HH
Confidence            589999999999999  58999999885421100 000                                00      11


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      ..|.+.+...   . +++.  +++.+.  ......+|||||++|++|.+.... ....+...+...+  +-..+..+|..
T Consensus        43 ~~e~~~l~~~---~-~~~~--i~~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~-~~~~~~~~~~~~~~qi~~~l~~lH~~  115 (316)
T cd05620          43 MVEKRVLALA---W-ENPF--LTHLYCTFQTKEHLFFVMEFLNGGDLMFHIQD-KGRFDLYRATFYAAEIVCGLQFLHSK  115 (316)
T ss_pred             HHHHHHHHhc---c-CCCC--ccCeeEEEEeCCEEEEEECCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            2232222211   1 2232  233332  334567999999999999875432 2233433333322  23347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||+||+++.  ++.++|+|||++.........      .....++..++++++...+..++..|++++...+.
T Consensus       116 ~ivHrDlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~  187 (316)
T cd05620         116 GIIYRDLKLDNVMLDR--DGHIKIADFGMCKENVFGDNR------ASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLY  187 (316)
T ss_pred             CeEecCCCHHHeEECC--CCCEEeCccCCCeecccCCCc------eeccCCCcCccCHHHHcCCCCCcccchhhhHHHHH
Confidence            9999999999999986  789999999998753211110      01123577888899888777788899999987776


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       188 el~  190 (316)
T cd05620         188 EML  190 (316)
T ss_pred             HHH
Confidence            655

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.51  E-value=4.8e-14  Score=153.08  Aligned_cols=191  Identities=17%  Similarity=0.139  Sum_probs=121.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|+.  +|+.||||+.+......                                 .+..      -.
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~------~~   47 (350)
T cd05573           7 KVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIK---------------------------------RNQI------AH   47 (350)
T ss_pred             EEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhh---------------------------------ccHH------HH
Confidence            5799999999999999  59999999874321000                                 0001      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +..|...+..+.     ++++.-...+.......++||||++|++|.++.... ..++...+...+  +-..+..+|..|
T Consensus        48 ~~~e~~~l~~~~-----~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~i~~qi~~aL~~LH~~g  121 (350)
T cd05573          48 VRAERDILADAD-----SPWIVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIRK-DVFPEETARFYIAELVLALDSVHKLG  121 (350)
T ss_pred             HHHHHHHHHhcC-----CCCccchhhheecCCeEEEEEcCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            233333333321     222211111222345679999999999998865422 233433333222  334478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHH-----------------------HHHHHHHhhcCHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL-----------------------LEAFYGIYEKDADKVLQ  511 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l-----------------------~~l~~ai~~~D~~~i~~  511 (765)
                      ++|+|+||.||+++.  ++.++|+|||++..+........                       .........++..++++
T Consensus       122 iiH~Dlkp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  199 (350)
T cd05573         122 FIHRDIKPDNILIDA--DGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAP  199 (350)
T ss_pred             eeccCCCHHHeEECC--CCCEEeecCCCCccCcccCcccccccccccccccccccccccccccccccccccccCccccCH
Confidence            999999999999986  88999999999987765430000                       00001123467788899


Q ss_pred             HHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          512 AMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       512 ~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ++...+...+..|++++...+.+++
T Consensus       200 E~~~~~~~~~~~DiwSlG~il~ell  224 (350)
T cd05573         200 EVLRGTPYGLECDWWSLGVILYEML  224 (350)
T ss_pred             HHHcCCCCCCceeeEecchhhhhhc
Confidence            9888777788899999987766554

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.50  E-value=1.4e-13  Score=149.41  Aligned_cols=187  Identities=15%  Similarity=0.106  Sum_probs=119.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||+|+.+......                                 .+....      
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~~------   41 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVND---------------------------------DEDIDW------   41 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcc---------------------------------hhHHHH------
Confidence            3689999999999998  58999999885432110                                 000001      


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +..|...+.+    ..++++|.-..-+....+..++||||++|++|.+.... ...++...+...+  +...+..+|..|
T Consensus        42 ~~~E~~~l~~----~~~hp~iv~~~~~~~~~~~~~lv~E~~~~~~L~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~  116 (329)
T cd05618          42 VQTEKHVFEQ----ASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQR-QRKLPEEHARFYSAEISLALNYLHERG  116 (329)
T ss_pred             HHHHHHHHHh----cCCCCcCCceeeEEEeCCEEEEEEeCCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            1222222221    11233332222222345667999999999999775422 2234433333222  233478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||.||+++.  ++.++|+|||++.........      .....++..++++++...+......|++++...+.+
T Consensus       117 ivH~Dikp~Nili~~--~~~~kL~DfG~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e  188 (329)
T cd05618         117 IIYRDLKLDNVLLDS--EGHIKLTDYGMCKEGLRPGDT------TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFE  188 (329)
T ss_pred             eeeCCCCHHHEEECC--CCCEEEeeCCccccccCCCCc------cccccCCccccCHHHHcCCCCCCccceecccHHHHH
Confidence            999999999999986  889999999998753221110      011245777888998877777778999999877766


Q ss_pred             HHH
Q 004254          535 FLN  537 (765)
Q Consensus       535 ~l~  537 (765)
                      ++.
T Consensus       189 l~~  191 (329)
T cd05618         189 MMA  191 (329)
T ss_pred             Hhh
Confidence            553

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.50  E-value=1.3e-13  Score=149.71  Aligned_cols=187  Identities=16%  Similarity=0.148  Sum_probs=118.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+....-  . .                              ...      ....
T Consensus         7 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~--~-~------------------------------~~~------~~~~   47 (331)
T cd05624           7 KVIGRGAFGEVAVVKMKHTERIYAMKILNKWE--M-L------------------------------KRA------ETAC   47 (331)
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEeHHH--H-H------------------------------hhH------HHHH
Confidence            5799999999999998  58999999873210  0 0                              000      0011


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~G  454 (765)
                      +..|...+...     +++.|....-+.+.....+|||||++|++|.++.......+....+...  .+-..++.+|..|
T Consensus        48 ~~~e~~~l~~~-----~~~~i~~l~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~~  122 (331)
T cd05624          48 FREERNVLVNG-----DCQWITTLHYAFQDENYLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLH  122 (331)
T ss_pred             HHHHHHHHHhC-----CCCCEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            22232222221     2233332222233345679999999999999875432223333332222  2234578899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCCHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGDTTAVR  529 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-----G~~~~~~D~~~l~  529 (765)
                      ++|+|+||+||+++.  ++.++|+|||++..+.......     .....+...++++++...     +......|++++.
T Consensus       123 iiHrDlkp~Nill~~--~~~~kl~DfG~a~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlG  195 (331)
T cd05624         123 YVHRDIKPDNVLLDM--NGHIRLADFGSCLKMNQDGTVQ-----SSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLG  195 (331)
T ss_pred             eeeccCchHHEEEcC--CCCEEEEeccceeeccCCCcee-----eccccCCcccCCHHHHhccccCCCCCCCcccEEeee
Confidence            999999999999985  8899999999998775432210     011235677888887754     4456778999988


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       196 vil~ell  202 (331)
T cd05624         196 VCMYEML  202 (331)
T ss_pred             hhhhhhh
Confidence            7766554

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.50  E-value=2.1e-13  Score=147.93  Aligned_cols=182  Identities=15%  Similarity=0.127  Sum_probs=117.7

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .||.|++|.||+|+.  +|+.||||+.++.....                                 .+....      +
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~---------------------------------~~~~~~------~   42 (329)
T cd05588           2 VIGRGSYAKVLLVELKKTRRIYAMKVIKKELVND---------------------------------DEDIDW------V   42 (329)
T ss_pred             eEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhHHHH------H
Confidence            589999999999998  58999999985421100                                 000001      1


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      ..|...+..+    .++++|  +.++.  +.....+|+|||++|+.|.+.... ...+....+....  +-..+..+|..
T Consensus        43 ~~e~~il~~~----~~hp~I--v~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~-~~~l~~~~~~~~~~qi~~~l~~lH~~  115 (329)
T cd05588          43 QTEKHVFETA----SNHPFL--VGLHSCFQTESRLFFVIEFVSGGDLMFHMQR-QRKLPEEHARFYSAEISLALNFLHER  115 (329)
T ss_pred             HHHHHHHHhc----cCCCCC--CceEEEEEcCCEEEEEEeCCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            2233222222    223333  22332  334567999999999999775432 2234433333322  22347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceecc-ChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI-SPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L-~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      |++|+|+||+||+++.  ++.++|+|||++... .+....       ....++..++++++...+......|++++...+
T Consensus       116 ~ivH~dlkp~Nili~~--~~~~kL~Dfg~~~~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l  186 (329)
T cd05588         116 GIIYRDLKLDNVLLDA--EGHIKLTDYGMCKEGIRPGDTT-------STFCGTPNYIAPEILRGEDYGFSVDWWALGVLM  186 (329)
T ss_pred             CeEecCCCHHHeEECC--CCCEEECcCccccccccCCCcc-------ccccCCccccCHHHHcCCCCCCccceechHHHH
Confidence            9999999999999986  889999999998753 221110       112357778889988777777889999998777


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       187 ~el~  190 (329)
T cd05588         187 FEMM  190 (329)
T ss_pred             HHHH
Confidence            6654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.50  E-value=9.4e-14  Score=150.91  Aligned_cols=198  Identities=20%  Similarity=0.221  Sum_probs=122.9

Q ss_pred             HHHhCCChhhhhcccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCccc
Q 004254          282 EEELGAPLDDVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKR  358 (765)
Q Consensus       282 e~elG~~~eeiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~  358 (765)
                      ++|+++...++.+.|.. ++||+|++|+||+|..  +|+.||||+.........                          
T Consensus         3 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~--------------------------   56 (343)
T cd07878           3 RQELNKTVWEVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLI--------------------------   56 (343)
T ss_pred             HHHHhHHHhhhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhH--------------------------
Confidence            45566555556565654 7999999999999998  589999998743221100                          


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceee-----eccCCCeEEEEeecCCCChhhhhhhhhcCC
Q 004254          359 DWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIF-----WEYTTPQILTMEYVPGIKINRIQSLDELGV  433 (765)
Q Consensus       359 d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy-----~e~st~~vLVMEyieG~~L~d~~~l~~~g~  433 (765)
                              ...      .+.+|.+.+..+.    +..-+.+..++     .+.....+++||++ |..|.++...  ..+
T Consensus        57 --------~~~------~~~~E~~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~--~~l  115 (343)
T cd07878          57 --------HAR------RTYRELRLLKHMK----HENVIGLLDVFTPATSIENFNEVYLVTNLM-GADLNNIVKC--QKL  115 (343)
T ss_pred             --------HHH------HHHHHHHHHHhcC----CCchhhhhhhhcccccccccCcEEEEeecC-CCCHHHHHhc--CCC
Confidence                    000      1222333333321    11111111111     12234568999998 6677765432  234


Q ss_pred             CHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHH
Q 004254          434 DRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ  511 (765)
Q Consensus       434 d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~  511 (765)
                      +...+...+  +-..+..+|..|++|+|+||+||+++.  ++.++|+|||++..++.....         ..++..++++
T Consensus       116 ~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~---------~~~t~~y~aP  184 (343)
T cd07878         116 SDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNE--DCELRILDFGLARQADDEMTG---------YVATRWYRAP  184 (343)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECC--CCCEEEcCCccceecCCCcCC---------ccccccccCc
Confidence            444333332  233477889999999999999999986  889999999999887653211         1235566777


Q ss_pred             HHHHc-CCCCCCCCHHHHHHHHHHHHH
Q 004254          512 AMVQM-GVLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       512 ~l~~l-G~~~~~~D~~~l~~~~~~~l~  537 (765)
                      ++... ...+...|++++.-.+.+++.
T Consensus       185 E~~~~~~~~~~~~DiwslG~il~el~~  211 (343)
T cd07878         185 EIMLNWMHYNQTVDIWSVGCIMAELLK  211 (343)
T ss_pred             hHhcCCccCCchhhhHhHHHHHHHHHH
Confidence            76644 345667899999877766653

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.50  E-value=2.1e-13  Score=147.37  Aligned_cols=184  Identities=17%  Similarity=0.108  Sum_probs=118.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+++.... .                               ++.       -.
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~-~-------------------------------~~~-------~~   46 (324)
T cd05587           6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQ-D-------------------------------DDV-------EC   46 (324)
T ss_pred             EEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhh-h-------------------------------hHH-------HH
Confidence            5799999999999998  57899999885421100 0                               000       01


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~  452 (765)
                      +..|.+.+..+.    +.+.  ++..+.  ......++||||++|++|.+.... ............+  +-..+..+|.
T Consensus        47 ~~~e~~~l~~~~----~~~~--i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~~-~~~~~~~~~~~~~~qi~~al~~lH~  119 (324)
T cd05587          47 TMVEKRVLALPG----KPPF--LTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQ-VGKFKEPHAVFYAAEIAIGLFFLHS  119 (324)
T ss_pred             HHHHHHHHHhcC----CCCc--eeeeEEEEEcCCEEEEEEcCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            233444333322    2222  233322  234567999999999999875432 1223333333222  2344788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      .|++|+|+||.||+++.  ++.++|+|||++.........      .....++..++++++...+...+..|++++.-.+
T Consensus       120 ~~ivH~dlkp~Nill~~--~~~~kL~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil  191 (324)
T cd05587         120 KGIIYRDLKLDNVMLDA--EGHIKIADFGMCKENIFGGKT------TRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLL  191 (324)
T ss_pred             CCeEecCCCHHHeEEcC--CCCEEEeecCcceecCCCCCc------eeeecCCccccChhhhcCCCCCcccchhhhHHHH
Confidence            99999999999999986  889999999998653211110      0112356778888888777777788999998776


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       192 ~ell  195 (324)
T cd05587         192 YEML  195 (324)
T ss_pred             HHHH
Confidence            6654

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.50  E-value=2.7e-13  Score=148.36  Aligned_cols=182  Identities=13%  Similarity=0.045  Sum_probs=120.3

Q ss_pred             ccccccceeEEEEEEe--C-CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--K-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~-G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      +.||+|++|.||+|++  + +..||||+.......                                 ..+.      .-
T Consensus        36 ~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~---------------------------------~~~~------~~   76 (340)
T PTZ00426         36 RTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKII---------------------------------KQKQ------VD   76 (340)
T ss_pred             EEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhh---------------------------------hhhh------HH
Confidence            7899999999999987  2 368999976321000                                 0000      01


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSH  453 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~  453 (765)
                      .+.+|.+.+..+.     +++|.-..-+.......++||||++|+.|.++.... ..++...+...  .+...+..+|..
T Consensus        77 ~~~~E~~~l~~l~-----hp~Iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~i~~~-~~~~~~~~~~~~~qi~~aL~~LH~~  150 (340)
T PTZ00426         77 HVFSERKILNYIN-----HPFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLRRN-KRFPNDVGCFYAAQIVLIFEYLQSL  150 (340)
T ss_pred             HHHHHHHHHHhCC-----CCCCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            2344555444432     233322222223345679999999999998865322 22333322222  233447889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||+||+++.  ++.++|+|||++..++....         ...+++.+++++.......+...|++++...+.
T Consensus       151 ~ivHrDLkp~NILl~~--~~~ikL~DFG~a~~~~~~~~---------~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~  219 (340)
T PTZ00426        151 NIVYRDLKPENLLLDK--DGFIKMTDFGFAKVVDTRTY---------TLCGTPEYIAPEILLNVGHGKAADWWTLGIFIY  219 (340)
T ss_pred             CeEccCCCHHHEEECC--CCCEEEecCCCCeecCCCcc---------eecCChhhcCHHHHhCCCCCccccccchhhHHH
Confidence            9999999999999985  89999999999987764321         124677889999987766777889999987766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       220 ell  222 (340)
T PTZ00426        220 EIL  222 (340)
T ss_pred             HHh
Confidence            654

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.50  E-value=1.6e-13  Score=148.30  Aligned_cols=185  Identities=15%  Similarity=0.123  Sum_probs=118.0

Q ss_pred             ccccccceeEEEEEEe-----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||+|++|.||+|+.     +|+.||||+.+.....                                      .....
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~--------------------------------------~~~~~   43 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIV--------------------------------------RNQKD   43 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHH--------------------------------------hhhhh
Confidence            4699999999999986     3789999987431100                                      00001


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccc-cceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVK-VPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  450 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~-vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi  450 (765)
                      ...+..|...+..+.     +++|. +-..+ +.....+++|||++|++|.+..... ..+....+...+  +-..+..+
T Consensus        44 ~~~~~~E~~il~~l~-----hp~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~qi~~~l~~l  116 (323)
T cd05584          44 TAHTKAERNILEAVK-----HPFIVDLIYAF-QTGGKLYLILEYLSGGELFMHLERE-GIFMEDTACFYLSEISLALEHL  116 (323)
T ss_pred             HHHHHHHHHHHHhCC-----CCchhceeeEE-ecCCeEEEEEeCCCCchHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHH
Confidence            123345555555442     23322 22222 3345679999999999998764321 122222222222  23447889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      |..|++|+|+||.||+++.  ++.++|+|||++.........      .....+...++++++..........|++++..
T Consensus       117 H~~~ivH~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~  188 (323)
T cd05584         117 HQQGIIYRDLKPENILLDA--QGHVKLTDFGLCKESIHEGTV------THTFCGTIEYMAPEILMRSGHGKAVDWWSLGA  188 (323)
T ss_pred             HHCCeecCCCCHHHeEECC--CCCEEEeeCcCCeecccCCCc------ccccCCCccccChhhccCCCCCCcceecccHH
Confidence            9999999999999999986  889999999998754322111      01123567788888877666677889999987


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       189 il~ell  194 (323)
T cd05584         189 LMYDML  194 (323)
T ss_pred             HHHHHh
Confidence            766554

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.50  E-value=2.2e-13  Score=147.67  Aligned_cols=185  Identities=17%  Similarity=0.106  Sum_probs=117.8

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .||.|++|+||+|..  +|+.||||+.+......                                 ++...      .+
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~------~~   42 (327)
T cd05617           2 VIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHD---------------------------------DEDID------WV   42 (327)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhHHH------HH
Confidence            689999999999998  58999999985421100                                 00001      12


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~Gf  455 (765)
                      ..|...+.++    .+++.|....-..+.....+|||||++|++|.+.... ...++...+...+  +-..+..+|..|+
T Consensus        43 ~~e~~~~~~~----~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~-~~~l~~~~~~~~~~qi~~al~~lH~~~i  117 (327)
T cd05617          43 QTEKHVFEQA----SSNPFLVGLHSCFQTTSRLFLVIEYVNGGDLMFHMQR-QRKLPEEHARFYAAEICIALNFLHERGI  117 (327)
T ss_pred             HHHHHHHHhh----cCCCCEeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            2333333222    2233322222222334567999999999999775422 1223333332222  2234788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|+||+||+++.  ++.++|+|||++..........      ....+...++++++...+..+...|++++...+.++
T Consensus       118 vHrDlkp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el  189 (327)
T cd05617         118 IYRDLKLDNVLLDA--DGHIKLTDYGMCKEGLGPGDTT------STFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEM  189 (327)
T ss_pred             eccCCCHHHEEEeC--CCCEEEeccccceeccCCCCce------ecccCCcccCCHHHHCCCCCCchheeehhHHHHHHH
Confidence            99999999999986  8899999999987532211100      112356778888888777777788999998877665


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       190 l  190 (327)
T cd05617         190 M  190 (327)
T ss_pred             H
Confidence            4

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.49  E-value=2e-13  Score=147.71  Aligned_cols=188  Identities=14%  Similarity=0.131  Sum_probs=118.5

Q ss_pred             ccccccceeEEEEEEe-----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||+|++|.||+|+.     +|+.||||+.+......   +                             ...      
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~---~-----------------------------~~~------   47 (332)
T cd05614           6 KVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQ---K-----------------------------AKT------   47 (332)
T ss_pred             EEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhh---h-----------------------------hhH------
Confidence            5799999999999986     47899999874311000   0                             000      


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  451 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~  451 (765)
                      .-.+..|...+..+    .+++.+....-+.+.....+++|||++|++|.+.... ...+....+...+  +-..+..+|
T Consensus        48 ~~~~~~e~~~l~~l----~~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~-~~~~~~~~~~~~~~qi~~~l~~lH  122 (332)
T cd05614          48 VEHTRTERNVLEHV----RQSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQ-RDNFSEDEVRFYSGEIILALEHLH  122 (332)
T ss_pred             HHHHHHHHHHHHhc----cCCCCcccEEEEEecCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence            01223344333333    2334333222223334557899999999999876432 2234444433332  333478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRR  530 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~  530 (765)
                      ..|++|+|+||.|||++.  ++.++|+|||++..+........     ....+...+++++.+... ......|++++..
T Consensus       123 ~~~ivHrDlkp~Nili~~--~~~~kl~DfG~~~~~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~  195 (332)
T cd05614         123 KLGIVYRDIKLENILLDS--EGHVVLTDFGLSKEFLSEEKERT-----YSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGI  195 (332)
T ss_pred             HCCcEecCCCHHHeEECC--CCCEEEeeCcCCccccccCCCcc-----ccccCCccccCHHHhcCCCCCCCccccccchh
Confidence            999999999999999986  88999999999876543221110     012357778888887632 3456789999987


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       196 il~ell  201 (332)
T cd05614         196 LIFELL  201 (332)
T ss_pred             hhhhhh
Confidence            766554

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.49  E-value=1.6e-13  Score=142.27  Aligned_cols=184  Identities=20%  Similarity=0.232  Sum_probs=121.4

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+-+|.|.+|.||+|+.  +|+.||||-.+.+-.+                                  +-+..+..+|+
T Consensus         7 ~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~k----------------------------------dGi~~talREI   52 (318)
T KOG0659|consen    7 LEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAK----------------------------------DGINRTALREI   52 (318)
T ss_pred             hhhhcCcceEEEEEEEecCCCcEEEEEEeeccccc----------------------------------cCccHHHHHHH
Confidence            35799999999999999  6999999988665211                                  11223456777


Q ss_pred             HHHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHH
Q 004254          376 DYTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQIL  451 (765)
Q Consensus       376 Df~~EA~--Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~--~L~qi~  451 (765)
                      -+.+|.+  |+..+...|.+             .+...||.||++- .|..+......-+.+..+-..+...  -+..+|
T Consensus        53 K~Lqel~h~nIi~LiD~F~~-------------~~~l~lVfEfm~t-dLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H  118 (318)
T KOG0659|consen   53 KLLQELKHPNIIELIDVFPH-------------KSNLSLVFEFMPT-DLEVVIKDKNIILSPADIKSYMLMTLKGLAYCH  118 (318)
T ss_pred             HHHHHccCcchhhhhhhccC-------------CCceEEEEEeccc-cHHHHhcccccccCHHHHHHHHHHHHHHHHHHH
Confidence            7777765  55555554433             3556899999984 3444443333344555554444333  367789


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      .+.++|||+||.|+|++.  +|.+++.|||+++.+.+..+...-+. .+-..+-+    +.+...--+...+|++++.-.
T Consensus       119 ~~~IlHRDlKPnNLLis~--~g~lKiADFGLAr~f~~p~~~~~~~V-~TRWYRAP----ELLfGsr~Yg~~VDmWavGCI  191 (318)
T KOG0659|consen  119 SKWILHRDLKPNNLLISS--DGQLKIADFGLARFFGSPNRIQTHQV-VTRWYRAP----ELLFGSRQYGTGVDMWAVGCI  191 (318)
T ss_pred             hhhhhcccCCccceEEcC--CCcEEeecccchhccCCCCcccccce-eeeeccCh----HHhccchhcCCcchhhhHHHH
Confidence            999999999999999996  99999999999999887665443221 11111112    222222334566788888876


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       192 ~AELl  196 (318)
T KOG0659|consen  192 FAELL  196 (318)
T ss_pred             HHHHH
Confidence            65554

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.49  E-value=1.7e-13  Score=150.06  Aligned_cols=187  Identities=13%  Similarity=0.119  Sum_probs=116.1

Q ss_pred             hcccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004254          293 FERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (765)
Q Consensus       293 F~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (765)
                      +.+++. +.||.|++|.||+|+.  +|+.||||+......+.                                   ...
T Consensus        73 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~~  117 (353)
T PLN00034         73 LSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDT-----------------------------------VRR  117 (353)
T ss_pred             HHHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHH-----------------------------------HHH
Confidence            334433 6799999999999998  58999999874432111                                   111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHH
Q 004254          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQ  449 (765)
Q Consensus       370 ~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~q  449 (765)
                            .+.+|++.+..+.     +++|.-..-+.+.....+++|||++|++|.+......  .....++..++ ..+..
T Consensus       118 ------~~~~E~~~l~~l~-----h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~i~~qi~-~aL~~  183 (353)
T PLN00034        118 ------QICREIEILRDVN-----HPNVVKCHDMFDHNGEIQVLLEFMDGGSLEGTHIADE--QFLADVARQIL-SGIAY  183 (353)
T ss_pred             ------HHHHHHHHHHhCC-----CCCcceeeeEeccCCeEEEEEecCCCCcccccccCCH--HHHHHHHHHHH-HHHHH
Confidence                  2334444444432     2332222222344566799999999998865321110  01112333222 34788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-----CCCCCCC
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-----VLVPTGD  524 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-----~~~~~~D  524 (765)
                      +|..|++|+|+||.||++++  ++.++|+|||++..+.......      ....++..+++++.+...     ......|
T Consensus       184 LH~~~ivHrDlkp~NIll~~--~~~~kL~DfG~~~~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~~~~~~D  255 (353)
T PLN00034        184 LHRRHIVHRDIKPSNLLINS--AKNVKIADFGVSRILAQTMDPC------NSSVGTIAYMSPERINTDLNHGAYDGYAGD  255 (353)
T ss_pred             HHHCCEeecCCCHHHEEEcC--CCCEEEcccccceecccccccc------cccccCccccCccccccccccCcCCCcchh
Confidence            99999999999999999986  8899999999988765432110      011345667777765422     2234679


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++...+.+++
T Consensus       256 vwslGvil~el~  267 (353)
T PLN00034        256 IWSLGVSILEFY  267 (353)
T ss_pred             HHHHHHHHHHHH
Confidence            999987766554

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.49  E-value=3.1e-13  Score=146.60  Aligned_cols=180  Identities=17%  Similarity=0.193  Sum_probs=119.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|+.  +|..||+|+.+......                                   ...      .
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~-----------------------------------~~~------~   49 (331)
T cd06649          11 SELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPA-----------------------------------IRN------Q   49 (331)
T ss_pred             EeecCCCCEEEEEEEECCCCcEEEEEEeecccCHH-----------------------------------HHH------H
Confidence            6799999999999999  58999999885432211                                   111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh-
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS-  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~-  452 (765)
                      +.+|.+.+..+.     ++++ .+..++ ......++||||++|++|.++.... ..++...+....  +...+..+|. 
T Consensus        50 ~~~E~~~l~~l~-----h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH~~  122 (331)
T cd06649          50 IIRELQVLHECN-----SPYIVGFYGAF-YSDGEISICMEHMDGGSLDQVLKEA-KRIPEEILGKVSIAVLRGLAYLREK  122 (331)
T ss_pred             HHHHHHHHHHCC-----CCCCCeEEEEE-EECCEEEEEeecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHhhc
Confidence            333444444332     2222 222222 2345679999999999999875322 223333332222  2234667776 


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      +|++|+|+||.||+++.  ++.++|+|||++..+......        ...++..+++++....+..+...|++++...+
T Consensus       123 ~~ivH~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~--------~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il  192 (331)
T cd06649         123 HQIMHRDVKPSNILVNS--RGEIKLCDFGVSGQLIDSMAN--------SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSL  192 (331)
T ss_pred             CCEEcCCCChhhEEEcC--CCcEEEccCcccccccccccc--------cCCCCcCcCCHhHhcCCCCCchHhHHHHHHHH
Confidence            47999999999999986  889999999999877543221        12356677888888777777888999998776


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       193 ~el~  196 (331)
T cd06649         193 VELA  196 (331)
T ss_pred             HHHH
Confidence            6554

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.49  E-value=1.8e-13  Score=151.04  Aligned_cols=189  Identities=17%  Similarity=0.199  Sum_probs=117.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+....-  ...                               .+...      .
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~--~~~-------------------------------~~~~~------~   47 (377)
T cd05629           7 KVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSE--MFK-------------------------------KDQLA------H   47 (377)
T ss_pred             EEEeecCCEEEEEEEECCCCCEEEEEEEEHHH--HHH-------------------------------hHHHH------H
Confidence            6799999999999998  69999999873210  000                               00001      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~  452 (765)
                      +.+|.+.+..+     ++++  +++++.  ......+|||||++|++|.++... ...+....+...  .+-..+.++|.
T Consensus        48 ~~~E~~il~~l-----~hp~--iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~~~~~~~~~~~~ql~~aL~~LH~  119 (377)
T cd05629          48 VKAERDVLAES-----DSPW--VVSLYYSFQDAQYLYLIMEFLPGGDLMTMLIK-YDTFSEDVTRFYMAECVLAIEAVHK  119 (377)
T ss_pred             HHHHHHHHHhC-----CCCC--cceEEEEEEcCCeeEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            23344433332     2233  333332  334567999999999999886432 122333322222  22344788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHH-HHHH---------------------------------
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL-LEAF---------------------------------  498 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l-~~l~---------------------------------  498 (765)
                      .|++|+|+||.||+++.  ++.++|+|||++..+.......+ ..+.                                 
T Consensus       120 ~givHrDlkp~NIll~~--~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (377)
T cd05629         120 LGFIHRDIKPDNILIDR--GGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATW  197 (377)
T ss_pred             CCeeccCCCHHHEEECC--CCCEEEeecccccccccccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence            99999999999999985  88999999999864432110000 0000                                 


Q ss_pred             -------HHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          499 -------YGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       499 -------~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                             ..-..+++.++++++......+...|++++...+.+++
T Consensus       198 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell  242 (377)
T cd05629         198 KKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECL  242 (377)
T ss_pred             hhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhhhhh
Confidence                   00013567788999887666777889999987665554

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.49  E-value=3e-13  Score=146.90  Aligned_cols=185  Identities=17%  Similarity=0.210  Sum_probs=117.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|+||+|+.  +|+.||||+.+..-       .         .                 -.....      .
T Consensus         7 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~-------~---------~-----------------~~~~~~------~   47 (331)
T cd05597           7 KVIGRGAFGEVAVVKMKNTGQVYAMKILNKWE-------M---------L-----------------KRAETA------C   47 (331)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHHH-------H---------h-----------------hhhhHH------H
Confidence            6799999999999998  58999999874210       0         0                 000001      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~  452 (765)
                      |..|...+..+     ++++  ++..+.  +.....++||||++|++|.++.......+....+...+  +-..+..+|.
T Consensus        48 ~~~e~~~l~~~-----~~~~--i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~  120 (331)
T cd05597          48 FREERDVLVNG-----DRRW--ITNLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQ  120 (331)
T ss_pred             HHHHHHHHHhC-----CCCC--CCceEEEEecCCeEEEEEecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            22333322222     2222  222222  23455799999999999988754322233333332222  3345788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCCHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGDTTA  527 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-----G~~~~~~D~~~  527 (765)
                      .|++|+|+||.||+++.  ++.++|+|||++..+.......     .....+...++++++...     +......|+++
T Consensus       121 ~~ivH~dlkp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Diws  193 (331)
T cd05597         121 LGYVHRDIKPDNVLLDK--NGHIRLADFGSCLRLLADGTVQ-----SNVAVGTPDYISPEILQAMEDGKGRYGPECDWWS  193 (331)
T ss_pred             CCeEECCCCHHHEEECC--CCCEEEEECCceeecCCCCCcc-----ccceeccccccCHHHHhhccccccCCCCcceeeh
Confidence            99999999999999985  8899999999987765432210     011235667788888752     44566789999


Q ss_pred             HHHHHHHHH
Q 004254          528 VRRTAQFFL  536 (765)
Q Consensus       528 l~~~~~~~l  536 (765)
                      +...+.+++
T Consensus       194 lG~~l~el~  202 (331)
T cd05597         194 LGVCMYEML  202 (331)
T ss_pred             hhhHHHHHh
Confidence            987766554

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.49  E-value=5.9e-14  Score=158.39  Aligned_cols=194  Identities=16%  Similarity=0.130  Sum_probs=125.9

Q ss_pred             hhhhhcccCc-ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004254          289 LDDVFERFDV-EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (765)
Q Consensus       289 ~eeiF~~fd~-~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (765)
                      |+..+.++.. ++||+||||.||||.+.|. ||||+..-.-                                  .-++-
T Consensus       387 WeIp~~ev~l~~rIGsGsFGtV~Rg~whGd-VAVK~Lnv~~----------------------------------pt~~q  431 (678)
T KOG0193|consen  387 WEIPPEEVLLGERIGSGSFGTVYRGRWHGD-VAVKLLNVDD----------------------------------PTPEQ  431 (678)
T ss_pred             cccCHHHhhccceeccccccceeecccccc-eEEEEEecCC----------------------------------CCHHH
Confidence            4444444433 7899999999999999875 9999882111                                  01111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCC--CeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HH
Q 004254          368 ASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTT--PQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AV  443 (765)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st--~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li  443 (765)
                      .+      .|.+|..|+++-++.     +|  - .+..++.  ...+|+.||+|-+|..........++-.++...  .+
T Consensus       432 lq------aFKnEVa~lkkTRH~-----NI--l-LFMG~~~~p~~AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQi  497 (678)
T KOG0193|consen  432 LQ------AFKNEVAVLKKTRHE-----NI--L-LFMGACMNPPLAIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQI  497 (678)
T ss_pred             HH------HHHHHHHHHhhcchh-----hh--e-eeehhhcCCceeeeehhccCchhhhhccchhhhhhHHHHHHHHHHH
Confidence            11      356666666655431     01  0 1122222  347899999999998876554444444433322  23


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC---C
Q 004254          444 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL---V  520 (765)
Q Consensus       444 ~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~---~  520 (765)
                      ...+.++|..+|+|+|+|.-|||+.+  +++|+|.|||++..-+.-...+    =+..-.+..-+|+++++.|+-.   +
T Consensus       498 aqGM~YLHAK~IIHrDLKSnNIFl~~--~~kVkIgDFGLatvk~~w~g~~----q~~qp~gsilwmAPEvIRmqd~nPfS  571 (678)
T KOG0193|consen  498 AQGMDYLHAKNIIHRDLKSNNIFLHE--DLKVKIGDFGLATVKTRWSGEQ----QLEQPHGSLLWMAPEVIRMQDDNPFS  571 (678)
T ss_pred             HHhhhhhhhhhhhhhhccccceEEcc--CCcEEEecccceeeeeeecccc----ccCCCccchhhhcHHHHhhcccCCCC
Confidence            44578899999999999999999985  7999999999987433211111    0122345677899999988653   4


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 004254          521 PTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       521 ~~~D~~~l~~~~~~~l~  537 (765)
                      +..|+++|.-..++++.
T Consensus       572 ~qSDVYaFGiV~YELlt  588 (678)
T KOG0193|consen  572 FQSDVYAFGIVWYELLT  588 (678)
T ss_pred             cccchhhhhHHHHHHHh
Confidence            56799999887776654

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.48  E-value=1.6e-13  Score=151.88  Aligned_cols=185  Identities=19%  Similarity=0.184  Sum_probs=118.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||+|+....-  .                                ...     ...-.
T Consensus        49 ~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~--~--------------------------------~~~-----~~~~~   89 (370)
T cd05621          49 KVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFE--M--------------------------------IKR-----SDSAF   89 (370)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHHH--h--------------------------------hhh-----hhHHH
Confidence            5799999999999999  58999999873210  0                                000     00011


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~G  454 (765)
                      +..|...+..+     ++++|.-..-..+.....++||||++|+.|.++...  ...+...+...  .+-..+..+|..|
T Consensus        90 ~~~e~~i~~~~-----~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~~--~~~~~~~~~~~~~qil~aL~~LH~~~  162 (370)
T cd05621          90 FWEERDIMAFA-----NSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMSN--YDVPEKWAKFYTAEVVLALDAIHSMG  162 (370)
T ss_pred             HHHHHHHHHhC-----CCCCEeeEEEEEEcCCEEEEEEcCCCCCcHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            22333333222     223322222222334567999999999999986532  23333333222  2334578899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc----CCCCCCCCHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM----GVLVPTGDTTAVRR  530 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l----G~~~~~~D~~~l~~  530 (765)
                      ++|+|+||+||+++.  ++.++|+|||++..+.......     .....+++.++++++...    +......|++++..
T Consensus       163 IvHrDLKp~NILl~~--~~~~kL~DFG~a~~~~~~~~~~-----~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~  235 (370)
T cd05621         163 LIHRDVKPDNMLLDK--HGHLKLADFGTCMKMDETGMVR-----CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGV  235 (370)
T ss_pred             eEecCCCHHHEEECC--CCCEEEEecccceecccCCcee-----cccCCCCcccCCHHHHhccCCCCCCCcccCEEeehH
Confidence            999999999999986  8999999999998775432110     012346778888888764    23566789999987


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       236 ilyell  241 (370)
T cd05621         236 FLFEML  241 (370)
T ss_pred             HHHHHH
Confidence            766654

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.48  E-value=7.2e-14  Score=151.02  Aligned_cols=186  Identities=18%  Similarity=0.220  Sum_probs=117.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                 .+...      .
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~------~   47 (330)
T cd05601           7 SLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLA---------------------------------QETVS------F   47 (330)
T ss_pred             EEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhh---------------------------------hhHHH------H
Confidence            6799999999999998  69999999874321000                                 00011      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +..|...+...     +++++.-..-+.+.....+|||||++|++|.++.......++...+...+  +-..++.+|..|
T Consensus        48 ~~~e~~i~~~~-----~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~  122 (330)
T cd05601          48 FEEERDILSIS-----NSPWIPQLQYAFQDKDNLYLVMEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMG  122 (330)
T ss_pred             HHHHHHHHHhC-----CCCCCcceeeEEecCCeEEEEECCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            22333322221     22332221112233456799999999999998754332334443333222  334578899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH------cCCCCCCCCHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ------MGVLVPTGDTTAV  528 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~------lG~~~~~~D~~~l  528 (765)
                      ++|+|+||.||+++.  ++.++|+|||++..+.......     .....++..++++++..      .+......|++++
T Consensus       123 i~H~Dlkp~NIll~~--~~~~kL~Dfg~a~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Diwsl  195 (330)
T cd05601         123 YVHRDIKPENVLIDR--TGHIKLADFGSAARLTANKMVN-----SKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSL  195 (330)
T ss_pred             eEcccCchHheEECC--CCCEEeccCCCCeECCCCCcee-----eecccCCccccCHHHhccccccccCCCCCcceeecc
Confidence            999999999999986  8999999999998775432210     11123567788888875      3445567899888


Q ss_pred             HHHHHHH
Q 004254          529 RRTAQFF  535 (765)
Q Consensus       529 ~~~~~~~  535 (765)
                      .-.+.++
T Consensus       196 G~il~el  202 (330)
T cd05601         196 GVIAYEM  202 (330)
T ss_pred             cceeeee
Confidence            7655443

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.48  E-value=2.8e-13  Score=149.34  Aligned_cols=203  Identities=18%  Similarity=0.146  Sum_probs=124.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      .-||+|++|.|-.|+.  +|+.|||||....-..            ..   ...+..........       +      +
T Consensus       103 ~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~------------~~---~~~~~~~a~~~~~~-------e------k  154 (576)
T KOG0585|consen  103 KEIGSGQYGKVKLARDEVDGKLYAIKILPKKELR------------RQ---YGFPRQPAMKLMPI-------E------K  154 (576)
T ss_pred             hhhcCCccceEEEEeecCCCcEEEEEeechhhhh------------hh---cccccccccccCcH-------H------H
Confidence            5699999999999999  7999999998321100            00   00110000000000       1      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li~~~L~qi~~~G  454 (765)
                      .++|..-|.++.    +..-|..-.|+.+- ++..|||.|||..+.+........ ...+..+-.-+-+-.-|.++|.+|
T Consensus       155 v~~EIailKkl~----H~nVV~LiEvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~Qg  230 (576)
T KOG0585|consen  155 VRREIAILKKLH----HPNVVKLIEVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQG  230 (576)
T ss_pred             HHHHHHHHHhcC----CcCeeEEEEeecCcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHhcC
Confidence            334445555543    22334445555433 456799999999998876432211 111222222222334488999999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC----CCCCCCHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV----LVPTGDTTAVRR  530 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~----~~~~~D~~~l~~  530 (765)
                      ++|||+||.|+|++.  +|+++|.|||.+-..+...-+..-+.+.. .-+++..+++++...|-    .....|++++..
T Consensus       231 iiHRDIKPsNLLl~~--~g~VKIsDFGVs~~~~~~~~~~~d~~L~~-tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGV  307 (576)
T KOG0585|consen  231 IIHRDIKPSNLLLSS--DGTVKISDFGVSNEFPQGSDEGSDDQLSR-TVGTPAFFAPELCSGGNSFSYSGFALDIWALGV  307 (576)
T ss_pred             eeccccchhheEEcC--CCcEEeeccceeeecccCCccccHHHHhh-cCCCccccchHhhcCCCCccccchhhhhhhhhh
Confidence            999999999999996  89999999999886633222221111122 46899999999987743    233459999988


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .++-|+
T Consensus       308 TLYCll  313 (576)
T KOG0585|consen  308 TLYCLL  313 (576)
T ss_pred             hHHHhh
Confidence            876654

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.48  E-value=5.4e-13  Score=135.49  Aligned_cols=182  Identities=18%  Similarity=0.180  Sum_probs=124.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++||+|++|.||+|..  +|+.|++|+.++...+.                                          .-+
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~------------------------------------------~~~   43 (253)
T cd05122           6 EKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEK------------------------------------------KEK   43 (253)
T ss_pred             eeeccCCceEEEEEEECCCCcEEEEEEecccchhH------------------------------------------HHH
Confidence            6899999999999999  58999999985543210                                          112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|...+..+.     ++++.-+.-........+++|||++|.+|.++.......++...+...+..  ..+..+|..|
T Consensus        44 ~~~e~~~l~~l~-----~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~  118 (253)
T cd05122          44 IINEIQILKKCK-----HPNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNG  118 (253)
T ss_pred             HHHHHHHHHhCC-----CCCEeEEEEEEecCCeEEEEEecCCCCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCC
Confidence            333444333332     222222222222346679999999999999876443234555555544333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|++|+||++++  ++.++|+|||.+..+.+...       ......+..++.++....+..+...|++++...+.+
T Consensus       119 i~h~dl~p~ni~i~~--~~~~~l~d~~~~~~~~~~~~-------~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~  189 (253)
T cd05122         119 IIHRDIKAANILLTS--DGEVKLIDFGLSAQLSDTKA-------RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIE  189 (253)
T ss_pred             EecCCCCHHHEEEcc--CCeEEEeecccccccccccc-------ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHH
Confidence            999999999999986  88999999999988876542       011234556677887777777778899999876655


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       190 l~  191 (253)
T cd05122         190 LA  191 (253)
T ss_pred             HH
Confidence            54

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.48  E-value=4.3e-13  Score=148.53  Aligned_cols=139  Identities=15%  Similarity=0.141  Sum_probs=95.6

Q ss_pred             cccccccceeEEEEEEe---CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL---KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l---~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      .+.||+|+||+||+|++   +|+.||||+..+.....                             .  -+.      ..
T Consensus        23 ~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~-----------------------------~--~~~------~~   65 (365)
T PRK09188         23 TAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWW-----------------------------S--KPL------AR   65 (365)
T ss_pred             ccEEeecCcEEEEEEEEcCCCCeEEEEEEeccccccc-----------------------------c--cHH------HH
Confidence            36799999999999987   47888999864321100                             0  000      11


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCC
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHG  454 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~G  454 (765)
                      -.|.+|++.+.++.+     +++ +|.++.  ....+|||||++|.+|....   ..  ....+... +...+.++|..|
T Consensus        66 ~~~~~E~~iL~~L~h-----~~i-v~~l~~--~~~~~LVmE~~~G~~L~~~~---~~--~~~~~~~~-i~~aL~~lH~~g  131 (365)
T PRK09188         66 HLAAREIRALKTVRG-----IGV-VPQLLA--TGKDGLVRGWTEGVPLHLAR---PH--GDPAWFRS-AHRALRDLHRAG  131 (365)
T ss_pred             HHHHHHHHHHHhccC-----CCC-CcEEEE--cCCcEEEEEccCCCCHHHhC---cc--chHHHHHH-HHHHHHHHHHCC
Confidence            236677777766632     233 456664  35689999999999886321   11  11233333 335678899999


Q ss_pred             ccccCC-CCCcEEEeecCCCcEEEEeecceeccChh
Q 004254          455 FFHADP-HPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (765)
Q Consensus       455 ffHaDp-HPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (765)
                      ++|+|+ ||+||+++.  +++++|+|||++..+.+.
T Consensus       132 IiHrDL~KP~NILv~~--~~~ikLiDFGlA~~~~~~  165 (365)
T PRK09188        132 ITHNDLAKPQNWLMGP--DGEAAVIDFQLASVFRRR  165 (365)
T ss_pred             CeeCCCCCcceEEEcC--CCCEEEEECccceecccC
Confidence            999999 899999975  789999999999988654

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.48  E-value=1.5e-13  Score=152.02  Aligned_cols=189  Identities=16%  Similarity=0.184  Sum_probs=116.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|+.  +|+.||||+.+...       .                          ...+...      .
T Consensus         7 ~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~-------~--------------------------~~~~~~~------~   47 (382)
T cd05625           7 KTLGIGAFGEVCLARKVDTKALYAMKTLRKKD-------V--------------------------LLRNQVA------H   47 (382)
T ss_pred             EEEEeCCCEEEEEEEECCCCCEEEEEEEeHHH-------h--------------------------hhHHHHH------H
Confidence            6799999999999998  68999999873210       0                          0000111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~  452 (765)
                      +..|.+.+..+     ++++  +++.+.  ......+|||||++|++|.++... ...+....+...+  +...+..+|.
T Consensus        48 ~~~E~~il~~~-----~h~~--iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~~~e~~~~~~~~qi~~al~~lH~  119 (382)
T cd05625          48 VKAERDILAEA-----DNEW--VVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIR-MGIFPEDLARFYIAELTCAVESVHK  119 (382)
T ss_pred             HHHHHHHHHhC-----CCCc--CCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            33344433333     1232  233332  224457999999999999886432 1122322222222  2345788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHH---------------------------------HH---
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL---------------------------------LE---  496 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l---------------------------------~~---  496 (765)
                      .|++|+|+||+|||++.  +|.++|+|||++..+.......+                                 ..   
T Consensus       120 ~~ivHrDlKp~NILl~~--~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (382)
T cd05625         120 MGFIHRDIKPDNILIDR--DGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAA  197 (382)
T ss_pred             CCeecCCCCHHHEEECC--CCCEEEeECCCCccccccccccccccccccccccccccccccccccccccccccchhhhhc
Confidence            99999999999999986  89999999999754321000000                                 00   


Q ss_pred             -----HHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          497 -----AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       497 -----l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                           ....-..+.+.++++++..........|++++.-.+.+++
T Consensus       198 ~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~ell  242 (382)
T cd05625         198 RQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEML  242 (382)
T ss_pred             cccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHHH
Confidence                 0000123567788899887666677889999987766654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.48  E-value=1.7e-13  Score=152.80  Aligned_cols=188  Identities=19%  Similarity=0.194  Sum_probs=136.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.+|.|.||+||+++.  +|+++|+|+........                         ..              ..-+
T Consensus        41 ~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~-------------------------~~--------------~~~~   81 (382)
T KOG0032|consen   41 RELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRG-------------------------KE--------------DRED   81 (382)
T ss_pred             hhhCCCCceEEEEEEecCCCceeEEEEeehhhccc-------------------------cc--------------cHHH
Confidence            6899999999999999  59999999873221100                         00              1124


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~G  454 (765)
                      ..+|.+.++++..   +..-|.++.+|. .....+||||+++|+.|.|.....  .+.....+..  .+...++++|..|
T Consensus        82 v~~Ev~il~~l~~---hpniv~l~~~~e-~~~~~~lvmEL~~GGeLfd~i~~~--~~sE~da~~~~~~il~av~~lH~~g  155 (382)
T KOG0032|consen   82 VRREVAILQQLSG---HPNIVQLKDAFE-DPDSVYLVMELCEGGELFDRIVKK--HYSERDAAGIIRQILEAVKYLHSLG  155 (382)
T ss_pred             HHHHHHHHHhccC---CCCEEEEEEEEE-cCCeEEEEEEecCCchHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            5666666666643   334466777764 456789999999999999854322  2433332222  2334578899999


Q ss_pred             ccccCCCCCcEEEeecCC--CcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNG--GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~--g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      ++|+|+||+|+|+....+  ++++++|||++..+.+..+       ..-..+.+.+++++......+.+..|++++....
T Consensus       156 vvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~~~~-------~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~  228 (382)
T KOG0032|consen  156 VVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKPGER-------LHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVIL  228 (382)
T ss_pred             ceeccCCHHHeeeccccCCCCcEEEeeCCCceEccCCce-------EeeecCCccccCchhhcCCCCCcccchhHHHHHH
Confidence            999999999999986433  5899999999999887332       1224679999999999977788899999999888


Q ss_pred             HHHHHH
Q 004254          533 QFFLNS  538 (765)
Q Consensus       533 ~~~l~~  538 (765)
                      +.++..
T Consensus       229 yiLL~G  234 (382)
T KOG0032|consen  229 YILLSG  234 (382)
T ss_pred             HHHhhC
Confidence            777654

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.47  E-value=2.9e-13  Score=149.82  Aligned_cols=183  Identities=21%  Similarity=0.236  Sum_probs=118.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||+|+....-  ...                               ...      .-.
T Consensus        49 ~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~--~~~-------------------------------~~~------~~~   89 (371)
T cd05622          49 KVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFE--MIK-------------------------------RSD------SAF   89 (371)
T ss_pred             EEEeecCCeEEEEEEECCCCcEEEEEEEEHHH--hhh-------------------------------hHH------HHH
Confidence            6799999999999999  58999999873210  000                               000      011


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~  452 (765)
                      +..|...+..+     +++++  ++++.  ......++||||++|++|.++...  ...+...+...+  +-..+..+|.
T Consensus        90 ~~~e~~i~~~~-----~hp~i--v~~~~~~~~~~~~~lv~Ey~~gg~L~~~~~~--~~~~~~~~~~~~~qi~~aL~~LH~  160 (371)
T cd05622          90 FWEERDIMAFA-----NSPWV--VQLFYAFQDDRYLYMVMEYMPGGDLVNLMSN--YDVPEKWARFYTAEVVLALDAIHS  160 (371)
T ss_pred             HHHHHHHHHhC-----CCCCC--CeEEEEEEcCCEEEEEEcCCCCCcHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHH
Confidence            22333333322     22332  23332  234457999999999999886532  233433332222  2334788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc----CCCCCCCCHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM----GVLVPTGDTTAV  528 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l----G~~~~~~D~~~l  528 (765)
                      .|++|+|+||.||+++.  ++.++|+|||++..+.......     .....+++.++++++...    +..+...|++++
T Consensus       161 ~~ivHrDLkp~NIll~~--~~~ikL~DfG~a~~~~~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSl  233 (371)
T cd05622         161 MGFIHRDVKPDNMLLDK--SGHLKLADFGTCMKMNKEGMVR-----CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSV  233 (371)
T ss_pred             CCEEeCCCCHHHEEECC--CCCEEEEeCCceeEcCcCCccc-----ccCcccCccccCHHHHhccCCCccCCCccceeeh
Confidence            99999999999999986  8999999999998775432110     011246778889988764    235677899999


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      ...+.+++
T Consensus       234 Gvilyell  241 (371)
T cd05622         234 GVFLYEML  241 (371)
T ss_pred             hHHHHHHH
Confidence            88776665

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.47  E-value=4.3e-13  Score=141.41  Aligned_cols=187  Identities=19%  Similarity=0.181  Sum_probs=116.3

Q ss_pred             ccccccceeEEEEEEe---CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL---KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l---~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      +.||+|++|.||+|+.   .|+.||||+.+......                           .       .      ..
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~---------------------------~-------~------~~   46 (290)
T cd07862           7 AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE---------------------------G-------M------PL   46 (290)
T ss_pred             eEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCC---------------------------C-------c------hH
Confidence            5799999999999987   37899999875432110                           0       0      01


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeee----ccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHH--HHHHHH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFW----EYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYA--VESYLE  448 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~----e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~ia~~l--i~~~L~  448 (765)
                      .+.+|...+..+.. +.+..-+.+..++.    +..+..+++|||++| .+.+.... ...+.+...+...+  +-..+.
T Consensus        47 ~~~~e~~~l~~l~~-~~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~  124 (290)
T cd07862          47 STIREVAVLRHLET-FEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ-DLTTYLDKVPEPGVPTETIKDMMFQLLRGLD  124 (290)
T ss_pred             HHHHHHHHHHhhcc-cCCCCcceEEEEEecccCCCCCcEEEEEccCCC-CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            12223332322221 12211122222221    123457999999986 56554322 22234444443333  233478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      .+|..|++|+|+||.||+++.  ++.++|+|||++..++....       .....+...+++++....+......|++++
T Consensus       125 ~lH~~~iiH~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~Diwsl  195 (290)
T cd07862         125 FLHSHRVVHRDLKPQNILVTS--SGQIKLADFGLARIYSFQMA-------LTSVVVTLWYRAPEVLLQSSYATPVDLWSV  195 (290)
T ss_pred             HHHHCCeeeCCCCHHHEEEcC--CCCEEEccccceEeccCCcc-------cccccccccccChHHHhCCCCCCccchHHH
Confidence            899999999999999999986  88999999999987654311       111234566788888877777778899999


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      ...+.+++
T Consensus       196 G~il~el~  203 (290)
T cd07862         196 GCIFAEMF  203 (290)
T ss_pred             HHHHHHHH
Confidence            87766554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.46  E-value=5.3e-13  Score=139.99  Aligned_cols=182  Identities=17%  Similarity=0.143  Sum_probs=117.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|.+|.||+|.+  +|+.||||+......+.                                   ..      -+
T Consensus        10 ~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~------~~   48 (277)
T cd06642          10 ERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAED-----------------------------------EI------ED   48 (277)
T ss_pred             HHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchH-----------------------------------HH------HH
Confidence            5699999999999998  58999999874321110                                   00      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|+..+.++     +++++.-..-........++||||++|++|.+...  ........+...+  +...+..+|..|
T Consensus        49 ~~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~  121 (277)
T cd06642          49 IQQEITVLSQC-----DSPYITRYYGSYLKGTKLWIIMEYLGGGSALDLLK--PGPLEETYIATILREILKGLDYLHSER  121 (277)
T ss_pred             HHHHHHHHHcC-----CCCccHhhhcccccCCceEEEEEccCCCcHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            33444444333     12222111111123456799999999999987643  2223333333222  223467789999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||+||++++  ++.++++|||++..+.......      ....++..++.++....+..+...|++++...+.+
T Consensus       122 ivH~dl~p~ni~i~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e  193 (277)
T cd06642         122 KIHRDIKAANVLLSE--QGDVKLADFGVAGQLTDTQIKR------NTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIE  193 (277)
T ss_pred             eeccCCChheEEEeC--CCCEEEccccccccccCcchhh------hcccCcccccCHHHhCcCCCchhhhHHHHHHHHHH
Confidence            999999999999986  8899999999998876543211      11234566777887776666777899998876655


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       194 l~  195 (277)
T cd06642         194 LA  195 (277)
T ss_pred             HH
Confidence            43

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.46  E-value=4.5e-13  Score=145.44  Aligned_cols=185  Identities=17%  Similarity=0.184  Sum_probs=116.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+++.  +++.||+|+.....  .              .                 -...      ...
T Consensus         7 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~--~--------------~-----------------~~~~------~~~   47 (332)
T cd05623           7 KVIGRGAFGEVAVVKLKNADKVFAMKILNKWE--M--------------L-----------------KRAE------TAC   47 (332)
T ss_pred             EEEEeCCCeEEEEEEECCCCCEEEEEEEeHHH--H--------------H-----------------HhhH------HHH
Confidence            6799999999999999  47899999872100  0              0                 0000      011


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~  452 (765)
                      |..|...+..+     +++.  ++.++.  +.....+|||||++|++|.++.......++...+...  .+...+..+|.
T Consensus        48 ~~~e~~~l~~~-----~~~~--i~~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~  120 (332)
T cd05623          48 FREERDVLVNG-----DNQW--ITTLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQ  120 (332)
T ss_pred             HHHHHHHHhhC-----CCCC--EeeEEEEEecCCEEEEEEeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            23333222221     2232  223322  3345679999999999999875432223333322222  23344788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-----cCCCCCCCCHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-----MGVLVPTGDTTA  527 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~-----lG~~~~~~D~~~  527 (765)
                      .|++|+|+||.||+++.  ++.++|+|||++..+.......     .....+...++++++..     .+...+..|+++
T Consensus       121 ~~iiHrDlkp~Nili~~--~~~~kL~DfG~a~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwS  193 (332)
T cd05623         121 LHYVHRDIKPDNILMDM--NGHIRLADFGSCLKLMEDGTVQ-----SSVAVGTPDYISPEILQAMEDGKGKYGPECDWWS  193 (332)
T ss_pred             CCeEecCCCHHHEEECC--CCCEEEeecchheecccCCcce-----ecccccCccccCHHHHhccccCCCCCCCcCCEEe
Confidence            99999999999999985  8899999999987664322110     11123567788888875     234567789999


Q ss_pred             HHHHHHHHH
Q 004254          528 VRRTAQFFL  536 (765)
Q Consensus       528 l~~~~~~~l  536 (765)
                      +...+.+++
T Consensus       194 lGvil~ell  202 (332)
T cd05623         194 LGVCMYEML  202 (332)
T ss_pred             eHHHHHHHh
Confidence            987766554

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.46  E-value=2.8e-13  Score=155.18  Aligned_cols=186  Identities=16%  Similarity=0.088  Sum_probs=122.5

Q ss_pred             cccccccceeEEEEEEe--C-CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--K-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~-G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      .+.+|.|++|.||+|..  + ++.||+|....+...                                          ..
T Consensus        72 ~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~------------------------------------------~~  109 (478)
T PTZ00267         72 TTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDER------------------------------------------QA  109 (478)
T ss_pred             EEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHH------------------------------------------HH
Confidence            36799999999999988  4 788999965211100                                          00


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh--h-hcCCCHHHHHHHH--HHHHHHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL--D-ELGVDRKRLGRYA--VESYLEQ  449 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l--~-~~g~d~~~ia~~l--i~~~L~q  449 (765)
                      ..+..|+..+..+     ++++|.-..-+.+.....+|||||++|++|.+....  . ...++...+...+  +...+..
T Consensus       110 ~~~~~E~~~l~~l-----~Hpniv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~  184 (478)
T PTZ00267        110 AYARSELHCLAAC-----DHFGIVKHFDDFKSDDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDE  184 (478)
T ss_pred             HHHHHHHHHHHhC-----CCCCEeEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence            1233455444433     223332222223344667999999999999875421  1 1223444333332  3345788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..|++|+|+||.||+++.  ++.++|+|||++..+........    .....+++.+++++....+..+...|++++.
T Consensus       185 lH~~~ivHrDlkp~NIll~~--~~~~kL~DFgla~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG  258 (478)
T PTZ00267        185 VHSRKMMHRDLKSANIFLMP--TGIIKLGDFGFSKQYSDSVSLDV----ASSFCGTPYYLAPELWERKRYSKKADMWSLG  258 (478)
T ss_pred             HHhCCEEECCcCHHhEEECC--CCcEEEEeCcCceecCCcccccc----ccccCCCccccCHhHhCCCCCCcHHhHHHHH
Confidence            99999999999999999986  88999999999988765322111    1112357778899988777777888999998


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       259 ~~l~el~  265 (478)
T PTZ00267        259 VILYELL  265 (478)
T ss_pred             HHHHHHH
Confidence            7766654

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.46  E-value=9.8e-13  Score=134.83  Aligned_cols=186  Identities=17%  Similarity=0.163  Sum_probs=123.4

Q ss_pred             ccccccceeEEEEEEe--C---CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--K---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~---G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||.|++|.||+|..  .   +..|+||+.++.....                                         .
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------------~   39 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEE-----------------------------------------E   39 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchh-----------------------------------------H
Confidence            3689999999999999  3   8899999885543211                                         0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh--------hcCCCHHHHHHHHHH-
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD--------ELGVDRKRLGRYAVE-  444 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~--------~~g~d~~~ia~~li~-  444 (765)
                      .-++..|.+.+..+.     ++++.-..-+.......+++|||++|++|.+.....        ....+...+...+.. 
T Consensus        40 ~~~~~~e~~~l~~~~-----~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  114 (262)
T cd00192          40 RKDFLKEARVMKKLG-----HPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQI  114 (262)
T ss_pred             HHHHHHHHHHHhhcC-----CCChheeeeeecCCCceEEEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHH
Confidence            112334444444432     222222221222355679999999999999875433        233455444444333 


Q ss_pred             -HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCC
Q 004254          445 -SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTG  523 (765)
Q Consensus       445 -~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~  523 (765)
                       ..+..+|..|++|+|++|.||+++.  ++.++|+|||.+..+.......    ...-...+..+++++....+..+...
T Consensus       115 ~~al~~lH~~~i~H~di~p~nili~~--~~~~~l~dfg~~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~  188 (262)
T cd00192         115 AKGMEYLASKKFVHRDLAARNCLVGE--DLVVKISDFGLSRDVYDDDYYR----KKTGGKLPIRWMAPESLKDGIFTSKS  188 (262)
T ss_pred             HHHHHHHHcCCcccCccCcceEEECC--CCcEEEcccccccccccccccc----cccCCCcCccccCHHHhccCCcchhh
Confidence             3468899999999999999999986  7999999999998876543100    00112234567788887777777788


Q ss_pred             CHHHHHHHHHHHH
Q 004254          524 DTTAVRRTAQFFL  536 (765)
Q Consensus       524 D~~~l~~~~~~~l  536 (765)
                      |++++...+.+++
T Consensus       189 Di~slG~il~~l~  201 (262)
T cd00192         189 DVWSFGVLLWEIF  201 (262)
T ss_pred             ccHHHHHHHHHHH
Confidence            9999987766554

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.45  E-value=3.2e-13  Score=149.42  Aligned_cols=185  Identities=19%  Similarity=0.222  Sum_probs=118.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+....-       +         .                  ..     ...-.
T Consensus        49 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~-------~---------~------------------~~-----~~~~~   89 (370)
T cd05596          49 KVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFE-------M---------I------------------KR-----SDSAF   89 (370)
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHH-------h---------h------------------hh-----hhHHH
Confidence            6799999999999998  58999999873210       0         0                  00     00112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~G  454 (765)
                      +..|...+..+     +++++.-..-+.+.....++||||++|++|.++..  ....+...+...  .+-..+.++|..|
T Consensus        90 ~~~e~~il~~~-----~h~~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~--~~~l~~~~~~~~~~qi~~aL~~LH~~~  162 (370)
T cd05596          90 FWEERDIMAHA-----NSEWIVQLHYAFQDDKYLYMVMEYMPGGDLVNLMS--NYDIPEKWARFYTAEVVLALDAIHSMG  162 (370)
T ss_pred             HHHHHHHHHhC-----CCCCcceEEEEEecCCEEEEEEcCCCCCcHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            23344333332     22332211112233455799999999999988653  223333333222  2334478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc----CCCCCCCCHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM----GVLVPTGDTTAVRR  530 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l----G~~~~~~D~~~l~~  530 (765)
                      ++|+|+||.||+++.  ++.++|+|||++..+.......     .....+.+.++++++..-    +..+...|++++.-
T Consensus       163 ivHrDLkp~NILl~~--~~~~kL~DfG~~~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGv  235 (370)
T cd05596         163 FIHRDVKPDNMLLDK--SGHLKLADFGTCMKMDANGMVR-----CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGV  235 (370)
T ss_pred             eeccCCCHHHEEEcC--CCCEEEEeccceeeccCCCccc-----CCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhH
Confidence            999999999999986  8999999999998765432100     011246777888888753    23566789999987


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       236 ilyell  241 (370)
T cd05596         236 FLYEML  241 (370)
T ss_pred             HHHHHH
Confidence            766654

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.45  E-value=2.3e-13  Score=143.20  Aligned_cols=185  Identities=16%  Similarity=0.161  Sum_probs=117.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                  +....+     
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~----------------------------------~~~~~~-----   47 (287)
T cd07848           7 GVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENE----------------------------------EVKETT-----   47 (287)
T ss_pred             EEecccCCEEEEEEEECCCCcEEEEEEEecccccc----------------------------------cchhhH-----
Confidence            5799999999999999  58999999874321100                                  001111     


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                       .+|...+..+.    +..-+.+..++ +.....++||||++|..+..+... ..+.+...+...+.  -..+..+|..|
T Consensus        48 -~~E~~~l~~l~----h~~iv~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~  120 (287)
T cd07848          48 -LRELKMLRTLK----QENIVELKEAF-RRRGKLYLVFEYVEKNMLELLEEM-PNGVPPEKVRSYIYQLIKAIHWCHKND  120 (287)
T ss_pred             -HHHHHHHHhCC----CccccchhhhE-ecCCEEEEEEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence             22333232221    11112222222 234567999999999877655322 22344444333332  23477889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||+||+++.  ++.++|+|||++..+.........     ...++..+++++....+..+...|++++...+.+
T Consensus       121 i~H~dlkp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~e  193 (287)
T cd07848         121 IVHRDIKPENLLISH--NDVLKLCDFGFARNLSEGSNANYT-----EYVATRWYRSPELLLGAPYGKAVDMWSVGCILGE  193 (287)
T ss_pred             eecCCCCHHHEEEcC--CCcEEEeeccCccccccccccccc-----ccccccccCCcHHHcCCCCCCchhHHhHHHHHHH
Confidence            999999999999985  889999999999887543221111     1124556777887776667778899999877665


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       194 l~  195 (287)
T cd07848         194 LS  195 (287)
T ss_pred             HH
Confidence            54

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.45  E-value=7.5e-13  Score=146.69  Aligned_cols=86  Identities=15%  Similarity=0.062  Sum_probs=63.3

Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004254          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (765)
Q Consensus       445 ~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D  524 (765)
                      ..+..+|..|++|+|+||.||++++  ++.++|+|||++..+.......    ..+.......+++++....+..++..|
T Consensus       225 ~~l~~lH~~~ivH~Dlkp~Nill~~--~~~~kl~DfG~a~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~sD  298 (375)
T cd05104         225 KGMSFLASKNCIHRDLAARNILLTH--GRITKICDFGLARDIRNDSNYV----VKGNARLPVKWMAPESIFNCVYTFESD  298 (375)
T ss_pred             HHHHHHHHCCeeccCCchhhEEEEC--CCcEEEecCccceeccCccccc----ccCCCCCCcceeChhHhcCCCCCCCCC
Confidence            3477889999999999999999985  7889999999998765432111    011111234577888887777888899


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++.-.+.+++
T Consensus       299 i~slG~~l~ell  310 (375)
T cd05104         299 VWSYGILLWEIF  310 (375)
T ss_pred             HHHHHHHHHHHH
Confidence            999987766554

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.45  E-value=1.1e-12  Score=135.90  Aligned_cols=181  Identities=19%  Similarity=0.251  Sum_probs=120.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|..  +|+.|++|+...+....                                   .      +-+
T Consensus         7 ~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------~------~~~   45 (265)
T cd06605           7 GELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEA-----------------------------------I------QKQ   45 (265)
T ss_pred             HHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChH-----------------------------------H------HHH
Confidence            5799999999999999  58999999875432211                                   0      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh-
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS-  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~-  452 (765)
                      +.+|...+.++.     ++++ .+...+ ......+++|||++|.+|.++........+...+...+.+  ..+..+|. 
T Consensus        46 ~~~e~~~l~~~~-----~~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~  119 (265)
T cd06605          46 ILRELDILHKCN-----SPYIVGFYGAF-YNNGDISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEK  119 (265)
T ss_pred             HHHHHHHHHHCC-----CCchhhhheee-ecCCEEEEEEEecCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence            233333333321     2222 122222 2235679999999999999875432233344443333222  33678899 


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      .|++|+|++|+||++++  ++.++|+|||.+..+.......        ...+..++.++...........|++++...+
T Consensus       120 ~~i~H~dl~~~ni~~~~--~~~~~l~d~g~~~~~~~~~~~~--------~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l  189 (265)
T cd06605         120 HKIIHRDVKPSNILVNS--RGQIKLCDFGVSGQLVNSLAKT--------FVGTSSYMAPERIQGNDYSVKSDIWSLGLSL  189 (265)
T ss_pred             CCeecCCCCHHHEEECC--CCCEEEeecccchhhHHHHhhc--------ccCChhccCHHHHcCCCCCchhhHHHHHHHH
Confidence            99999999999999986  8899999999988775433221        3356677888887777677778999998766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       190 ~~l~  193 (265)
T cd06605         190 IELA  193 (265)
T ss_pred             HHHH
Confidence            5554

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.45  E-value=2.3e-12  Score=138.70  Aligned_cols=198  Identities=19%  Similarity=0.196  Sum_probs=126.8

Q ss_pred             HHHHHhCCChhhhhcccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 004254          280 IVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK  357 (765)
Q Consensus       280 iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~  357 (765)
                      +...-++.++++.|..  .+.||+|++|+||+|+.  +|+.||||+....-...                          
T Consensus        14 ~~~~~~~~~~~~~f~~--~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~--------------------------   65 (317)
T cd06635          14 IAELFFKEDPEKLFTD--LREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQS--------------------------   65 (317)
T ss_pred             HHHHhcCCCchhhhhh--hheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCc--------------------------
Confidence            4455677788887764  45799999999999998  68999999874321100                          


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHH
Q 004254          358 RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR  437 (765)
Q Consensus       358 ~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~  437 (765)
                             .+      ...++.+|++.+.++.    +..-+.+...+ ......++||||++| ++.+.........+...
T Consensus        66 -------~~------~~~~~~~e~~~l~~l~----h~~iv~~~~~~-~~~~~~~lv~e~~~g-~l~~~~~~~~~~l~~~~  126 (317)
T cd06635          66 -------NE------KWQDIIKEVKFLQRIK----HPNSIEYKGCY-LREHTAWLVMEYCLG-SASDLLEVHKKPLQEVE  126 (317)
T ss_pred             -------hH------HHHHHHHHHHHHHhCC----CCCEEEEEEEE-eeCCeEEEEEeCCCC-CHHHHHHHhcCCCCHHH
Confidence                   00      0113444554444432    22222222222 234567999999987 56555433333345444


Q ss_pred             HHHHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004254          438 LGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (765)
Q Consensus       438 ia~~li--~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~  515 (765)
                      +...+.  ...+..+|..|++|+|++|+||+++.  ++.++++|||++...+....          ..+...+++++...
T Consensus       127 ~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~----------~~~~~~y~aPE~~~  194 (317)
T cd06635         127 IAAITHGALQGLAYLHSHNMIHRDIKAGNILLTE--PGQVKLADFGSASIASPANS----------FVGTPYWMAPEVIL  194 (317)
T ss_pred             HHHHHHHHHHHHHHHHHCCcccCCCCcccEEECC--CCCEEEecCCCccccCCccc----------ccCCccccChhhhh
Confidence            444332  23467889999999999999999985  78999999999876654321          12344566777653


Q ss_pred             ---cCCCCCCCCHHHHHHHHHHHH
Q 004254          516 ---MGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       516 ---lG~~~~~~D~~~l~~~~~~~l  536 (765)
                         .+...+..|++++...+.+++
T Consensus       195 ~~~~~~~~~~~Dv~slGvil~el~  218 (317)
T cd06635         195 AMDEGQYDGKVDVWSLGITCIELA  218 (317)
T ss_pred             cCCCCCCCccccHHHHHHHHHHHH
Confidence               355677789999987665554

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.45  E-value=2.1e-13  Score=155.53  Aligned_cols=183  Identities=16%  Similarity=0.172  Sum_probs=115.4

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCch--hhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLK--DLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~--~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      .+.||.|+||||-+|..  +|+.|||||.+-...  .+-                                         
T Consensus       191 ~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~-----------------------------------------  229 (586)
T KOG0667|consen  191 LEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQA-----------------------------------------  229 (586)
T ss_pred             EEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHH-----------------------------------------
Confidence            47899999999999999  699999999843221  111                                         


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHH--HHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRY--AVESYLE  448 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~--li~~~L~  448 (765)
                          ..|.+-++.+.+.- ......+-+.|.  -+....+||.|..+ ..|.++.... -.|++...+...  .+-..|.
T Consensus       230 ----~~Ei~iL~~ln~~d-~~~~~n~Vrm~d~F~fr~HlciVfELL~-~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~  303 (586)
T KOG0667|consen  230 ----QIEIRILELLNKHD-PDDKYNIVRMLDYFYFRNHLCIVFELLS-TNLYELLKNNKFRGLSLPLVRKFAQQILTALL  303 (586)
T ss_pred             ----HHHHHHHHHHhccC-CCCCeeEEEeeeccccccceeeeehhhh-hhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence                12333444444311 112233333333  34567799999874 4566654322 234444333222  2333466


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      .+++.|++||||||+|||+.+....+|++||||.+...++..- .|+   ..-..+     +++++--+-.....|+++|
T Consensus       304 ~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~vy-tYi---QSRfYR-----APEVILGlpY~~~IDmWSL  374 (586)
T KOG0667|consen  304 FLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRVY-TYI---QSRFYR-----APEVILGLPYDTAIDMWSL  374 (586)
T ss_pred             HHHhCCeeeccCChhheeeccCCcCceeEEecccccccCCcce-eee---eccccc-----cchhhccCCCCCccceeeh
Confidence            7889999999999999999875556899999999998887543 221   111112     3444444445677899999


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      .-.+.++.
T Consensus       375 GCIlAEL~  382 (586)
T KOG0667|consen  375 GCILAELF  382 (586)
T ss_pred             hhhHHhHh
Confidence            98776654

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.45  E-value=1.2e-12  Score=138.04  Aligned_cols=183  Identities=15%  Similarity=0.112  Sum_probs=117.6

Q ss_pred             ccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          301 IAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       301 IgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      ||+|++|+||+++.  +|+.||+|+........                                       ...+-.+.
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~---------------------------------------~~~~~~~~   41 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKK---------------------------------------KSGEKMAL   41 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhc---------------------------------------chhhHHHH
Confidence            68999999999998  59999999873211000                                       00011112


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYA--VESYLEQILSHGF  455 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~ia~~l--i~~~L~qi~~~Gf  455 (765)
                      .|...+.++     ++++|.-..-+.+.....+++|||++|++|.+.... ...+.+...+...+  +...+..+|..|+
T Consensus        42 ~E~~il~~l-----~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i  116 (277)
T cd05607          42 LEKEILEKV-----NSPFIVNLAYAFESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDI  116 (277)
T ss_pred             HHHHHHHhc-----CCCcEEEEEEEEecCCeEEEEEecCCCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            233333333     223332211122334567999999999999875432 22234444443322  3344788899999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|++|.||++++  ++.++|+|||++..+......       ....+...+++++....+..+...|++++.-.+.++
T Consensus       117 vH~dikp~Nili~~--~~~~~l~Dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el  187 (277)
T cd05607         117 VYRDMKPENVLLDD--QGNCRLSDLGLAVELKDGKTI-------TQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEM  187 (277)
T ss_pred             EEccCChHhEEEcC--CCCEEEeeceeeeecCCCcee-------eccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHH
Confidence            99999999999986  789999999998876543211       012345677888888777777888999998776655


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       188 ~  188 (277)
T cd05607         188 V  188 (277)
T ss_pred             H
Confidence            4

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.45  E-value=4.3e-13  Score=146.62  Aligned_cols=194  Identities=19%  Similarity=0.185  Sum_probs=118.5

Q ss_pred             CCChhhhhcccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHH
Q 004254          286 GAPLDDVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (765)
Q Consensus       286 G~~~eeiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~  362 (765)
                      |.+.-.++..|.. +.||.|++|.||+|..  .|+.||||+........-                              
T Consensus         9 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~------------------------------   58 (355)
T cd07874           9 GDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQT------------------------------   58 (355)
T ss_pred             CchhhhhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChH------------------------------
Confidence            3333345555543 7899999999999998  589999998743221110                              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee-----ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHH
Q 004254          363 IYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINRIQSLDELGVDRKR  437 (765)
Q Consensus       363 i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~-----e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~  437 (765)
                          ...      ++.+|...+..+.    +..-+.+..++.     +.....+++|||++|.....+.    ...+...
T Consensus        59 ----~~~------~~~~E~~~l~~l~----h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~----~~l~~~~  120 (355)
T cd07874          59 ----HAK------RAYRELVLMKCVN----HKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQ----MELDHER  120 (355)
T ss_pred             ----HHH------HHHHHHHHHHHhC----CCchhceeeeeeccccccccceeEEEhhhhcccHHHHHh----hcCCHHH
Confidence                001      1222333222221    211122222221     1123468999999985333221    1234333


Q ss_pred             HHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004254          438 LGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (765)
Q Consensus       438 ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~  515 (765)
                      +...+  +-..+..+|..|++|+|+||+||+++.  ++.++|+|||++.........       .-..++..++++++..
T Consensus       121 ~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~-------~~~~~t~~y~aPE~~~  191 (355)
T cd07874         121 MSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKS--DCTLKILDFGLARTAGTSFMM-------TPYVVTRYYRAPEVIL  191 (355)
T ss_pred             HHHHHHHHHHHHHHHHhCCcccCCCChHHEEECC--CCCEEEeeCcccccCCCcccc-------CCccccCCccCHHHHc
Confidence            33222  233578899999999999999999986  889999999999876543211       1112456677888776


Q ss_pred             cCCCCCCCCHHHHHHHHHHHH
Q 004254          516 MGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       516 lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      .....+..|++++.-.+.+++
T Consensus       192 ~~~~~~~~DiwslG~il~el~  212 (355)
T cd07874         192 GMGYKENVDIWSVGCIMGEMV  212 (355)
T ss_pred             CCCCCchhhHHHHHHHHHHHH
Confidence            666677889999987766654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.45  E-value=9.4e-13  Score=139.42  Aligned_cols=185  Identities=16%  Similarity=0.090  Sum_probs=120.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|..  +|+.||||+........                                       -..+..
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------------------------~~~~~~   46 (285)
T cd05605           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK---------------------------------------RKGEAM   46 (285)
T ss_pred             EEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhh---------------------------------------hhhHHH
Confidence            5699999999999998  58999999874321100                                       011234


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      +.+|++.+.++.    +..-+.+...+ ......+++|||++|+.|.+..... ...++...+...+.  -..+..+|..
T Consensus        47 ~~~E~~~l~~l~----h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~  121 (285)
T cd05605          47 ALNEKQILEKVN----SRFVVSLAYAY-ETKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRE  121 (285)
T ss_pred             HHHHHHHHHhcC----CCCEeeeeeee-cCCCeEEEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            455665555542    21112222222 2234679999999999998754322 22344444333322  2346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|.||++++  ++.++++|||++..+.......       -..+...++++++..-+..+...|++++...+.
T Consensus       122 ~ivH~dlkp~Nil~~~--~~~~~l~Dfg~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~  192 (285)
T cd05605         122 RIVYRDLKPENILLDD--YGHIRISDLGLAVEIPEGETIR-------GRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIY  192 (285)
T ss_pred             CcEecCCCHHHEEECC--CCCEEEeeCCCceecCCCCccc-------cccCCCCccCcHHhcCCCCCccccchhHHHHHH
Confidence            9999999999999986  7899999999988765332110       112455677788776666677789999887666


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       193 el~  195 (285)
T cd05605         193 EMI  195 (285)
T ss_pred             HHH
Confidence            554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.45  E-value=8.3e-14  Score=152.48  Aligned_cols=190  Identities=19%  Similarity=0.241  Sum_probs=132.4

Q ss_pred             CChhhhhcccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHH
Q 004254          287 APLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIY  364 (765)
Q Consensus       287 ~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~  364 (765)
                      .+++..|..+  +-||.||||.||+|..  .++.||+|+..-+-.+                                  
T Consensus         9 ~~~~~~~~~~--~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~----------------------------------   52 (467)
T KOG0201|consen    9 IDPELLYTKL--ELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAE----------------------------------   52 (467)
T ss_pred             CCcccccccc--hhccccccceeeeeeeccccceEEEEEechhhcc----------------------------------
Confidence            3556666666  5799999999999999  6999999998221111                                  


Q ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHH--
Q 004254          365 DECASVLYQEIDYTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGR--  440 (765)
Q Consensus       365 ~E~~~~l~~ElDf~~EA~--Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~--  440 (765)
                      ++. +-+.+|+.+..+.+  |+.+....+-             ..+..+++||||.|+++.++...... .+...++.  
T Consensus        53 deI-ediqqei~~Ls~~~~~~it~yygsyl-------------~g~~LwiiMey~~gGsv~~lL~~~~~-~~E~~i~~il  117 (467)
T KOG0201|consen   53 DEI-EDIQQEISVLSQCDSPNITEYYGSYL-------------KGTKLWIIMEYCGGGSVLDLLKSGNI-LDEFEIAVIL  117 (467)
T ss_pred             hhh-HHHHHHHHHHHhcCcchHHhhhhhee-------------ecccHHHHHHHhcCcchhhhhccCCC-Cccceeeeeh
Confidence            111 12334554544443  3333222211             14567999999999999987654322 13333332  


Q ss_pred             HHHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004254          441 YAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (765)
Q Consensus       441 ~li~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~  520 (765)
                      +.+...+..+|.++.+|+|+|+.||++..  +|.+++.|||.++.++......  ..|    -+++-+|+++++..-.+.
T Consensus       118 re~l~~l~ylH~~~kiHrDIKaanil~s~--~g~vkl~DfgVa~ql~~~~~rr--~tf----vGTPfwMAPEVI~~~~Y~  189 (467)
T KOG0201|consen  118 REVLKGLDYLHSEKKIHRDIKAANILLSE--SGDVKLADFGVAGQLTNTVKRR--KTF----VGTPFWMAPEVIKQSGYD  189 (467)
T ss_pred             HHHHHHhhhhhhcceecccccccceeEec--cCcEEEEecceeeeeechhhcc--ccc----cccccccchhhhcccccc
Confidence            23445588899999999999999999996  6999999999999998765443  223    368999999999965677


Q ss_pred             CCCCHHHHHHHHHHH
Q 004254          521 PTGDTTAVRRTAQFF  535 (765)
Q Consensus       521 ~~~D~~~l~~~~~~~  535 (765)
                      ..+|+++|.-.+.++
T Consensus       190 ~KADIWSLGITaiEl  204 (467)
T KOG0201|consen  190 TKADIWSLGITAIEL  204 (467)
T ss_pred             chhhhhhhhHHHHHH
Confidence            889999998766554

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.45  E-value=8e-13  Score=138.19  Aligned_cols=183  Identities=12%  Similarity=0.100  Sum_probs=116.4

Q ss_pred             ccccccceeEEEEEEe-----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||.|+||+||+|++     .+..||+|+.+.+....                                         .
T Consensus        11 ~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~-----------------------------------------~   49 (266)
T cd05064          11 RILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDK-----------------------------------------Q   49 (266)
T ss_pred             eeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHH-----------------------------------------H
Confidence            5799999999999987     25789999875432111                                         0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQI  450 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi  450 (765)
                      +.+|.+|...+..+    . ++++ .+...+ ......++||||++|++|.++.......+....+...+.  -..+..+
T Consensus        50 ~~~~~~e~~~l~~l----~-h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~l  123 (266)
T cd05064          50 RRGFLAEALTLGQF----D-HSNIVRLEGVI-TRGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYL  123 (266)
T ss_pred             HHHHHHHHHHHhcC----C-CCCcCeEEEEE-ecCCCcEEEEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            12344555444433    2 2322 222222 334567999999999999987543322344443333222  2346789


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      |..|++|+|+||.||++++  ++.+++.|||..........  .. .  ........+++++....+..++..|++++.-
T Consensus       124 H~~~iiH~dikp~nili~~--~~~~~l~dfg~~~~~~~~~~--~~-~--~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  196 (266)
T cd05064         124 SEMGYVHKGLAAHKVLVNS--DLVCKISGFRRLQEDKSEAI--YT-T--MSGKSPVLWAAPEAIQYHHFSSASDVWSFGI  196 (266)
T ss_pred             HHCCEeeccccHhhEEEcC--CCcEEECCCcccccccccch--hc-c--cCCCCceeecCHHHHhhCCccchhHHHHHHH
Confidence            9999999999999999986  88999999998765432211  00 0  0011123466777777777778889999887


Q ss_pred             HHHHH
Q 004254          531 TAQFF  535 (765)
Q Consensus       531 ~~~~~  535 (765)
                      .+.++
T Consensus       197 ~l~el  201 (266)
T cd05064         197 VMWEV  201 (266)
T ss_pred             HHHHH
Confidence            66554

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.45  E-value=3.4e-13  Score=143.81  Aligned_cols=183  Identities=17%  Similarity=0.101  Sum_probs=113.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                         ....
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~-----------------------------------------~~~~   49 (303)
T cd07869          11 EKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEG-----------------------------------------TPFT   49 (303)
T ss_pred             eeEEecCCEEEEEEEECCCCCEEEEEEeccccccc-----------------------------------------cchh
Confidence            6899999999999999  68999999874221100                                         0012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +.+|+..+..+    . ++++....-+.......++||||++|. +.+.........+...+...+.  -..+..+|..|
T Consensus        50 ~~~E~~~l~~l----~-h~niv~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~  123 (303)
T cd07869          50 AIREASLLKGL----K-HANIVLLHDIIHTKETLTLVFEYVHTD-LCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRY  123 (303)
T ss_pred             HHHHHHHHhhC----C-CCCcCeEEEEEecCCeEEEEEECCCcC-HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            23344444333    2 233332222223355679999999874 4333222223345554443332  23478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|+||+||++++  ++.++|+|||++...+......      .-..++..+++++...- .......|++++...+.
T Consensus       124 ivH~dlkp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~  195 (303)
T cd07869         124 ILHRDLKPQNLLISD--TGELKLADFGLARAKSVPSHTY------SNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFV  195 (303)
T ss_pred             eecCCCCHHHEEECC--CCCEEECCCCcceeccCCCccC------CCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHH
Confidence            999999999999986  7899999999987654321110      00123455677776542 33455679999887666


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       196 ~l~  198 (303)
T cd07869         196 EMI  198 (303)
T ss_pred             HHH
Confidence            554

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.45  E-value=5.3e-13  Score=141.50  Aligned_cols=182  Identities=13%  Similarity=0.061  Sum_probs=112.1

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||.|++|.||+|+.  +|+.||||+.+......                           .              ..
T Consensus        10 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------~--------------~~   48 (288)
T cd07871          10 LDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEG---------------------------A--------------PC   48 (288)
T ss_pred             eeEEecCCCEEEEEEEECCCCCEEEEEEecccccCC---------------------------c--------------ch
Confidence            36799999999999998  58999999874321100                           0              00


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQIL  451 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~  451 (765)
                      .+.+|.+.+.++.     +++|  .+++.  ......++||||++| .|.+.............+...  .+-..+..+|
T Consensus        49 ~~~~E~~~l~~l~-----h~ni--v~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH  120 (288)
T cd07871          49 TAIREVSLLKNLK-----HANI--VTLHDIIHTERCLTLVFEYLDS-DLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCH  120 (288)
T ss_pred             hHHHHHHHHHhCC-----CCCE--eeEEEEEcCCCeEEEEEeCCCc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            1233444444332     2332  23332  233456899999998 666644322222333333222  2334478889


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRR  530 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~  530 (765)
                      ..|++|+|+||+||+++.  ++.++|+|||++..........      .-..+...++++++..- .......|++++..
T Consensus       121 ~~~ivH~dlkp~Nil~~~--~~~~kl~DfG~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~  192 (288)
T cd07871         121 KRKILHRDLKPQNLLINE--KGELKLADFGLARAKSVPTKTY------SNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGC  192 (288)
T ss_pred             hCCcccCCCCHHHEEECC--CCCEEECcCcceeeccCCCccc------cCceecccccChHHhcCCcccCcHHHHHHHHH
Confidence            999999999999999986  8899999999987654322110      00123455667776543 33456679999887


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       193 ~l~~l~  198 (288)
T cd07871         193 ILYEMA  198 (288)
T ss_pred             HHHHHH
Confidence            665554

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.44  E-value=1.1e-12  Score=135.90  Aligned_cols=179  Identities=15%  Similarity=0.143  Sum_probs=119.0

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +.||.|++|.||+|..+|..|++|..+.+..                                            .-+|.
T Consensus        12 ~~lg~g~~~~v~~~~~~~~~~~~k~~~~~~~--------------------------------------------~~~~~   47 (256)
T cd05082          12 QTIGKGEFGDVMLGDYRGNKVAVKCIKNDAT--------------------------------------------AQAFL   47 (256)
T ss_pred             eeecccCCCeEEEEEEcCCcEEEEEeCCCch--------------------------------------------HHHHH
Confidence            6799999999999999999999997632110                                            01344


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc-CCCHHHHHHHH--HHHHHHHHHhCCc
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRYA--VESYLEQILSHGF  455 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~-g~d~~~ia~~l--i~~~L~qi~~~Gf  455 (765)
                      +|+..+.++.    +..-+.+...+.+.....+++|||++|++|.+....... ..+...+...+  +...+..+|..|+
T Consensus        48 ~e~~~l~~l~----~~~i~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  123 (256)
T cd05082          48 AEASVMTQLR----HSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNF  123 (256)
T ss_pred             HHHHHHHhCC----CCCeeeEEEEEEcCCCceEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            5555554442    222222222333334567999999999999886543222 13333333322  2244788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|++|+||++++  ++.++++|||++.........         ......+++++....+..+...|++++.-.+.++
T Consensus       124 ~H~dlkp~nil~~~--~~~~kl~dfg~~~~~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l  192 (256)
T cd05082         124 VHRDLAARNVLVSE--DNVAKVSDFGLTKEASSTQDT---------GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEI  192 (256)
T ss_pred             eccccchheEEEcC--CCcEEecCCccceeccccCCC---------CccceeecCHHHHccCCCCchhhhHHHHHHHHHH
Confidence            99999999999986  889999999998765432211         1223457778877777777788999988666554


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       193 ~  193 (256)
T cd05082         193 Y  193 (256)
T ss_pred             H
Confidence            3

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.44  E-value=1.3e-12  Score=138.32  Aligned_cols=185  Identities=16%  Similarity=0.091  Sum_probs=120.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|..  +|+.||||+..+.....                                       -..+..
T Consensus         6 ~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------------~~~~~~   46 (285)
T cd05632           6 RVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKK---------------------------------------RKGESM   46 (285)
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhh---------------------------------------hhHHHH
Confidence            5799999999999999  58999999874421100                                       001123


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~li~--~~L~qi~~~  453 (765)
                      +.+|.+.+.++.+    ...+.+...+ ......+++|||++|+.|.+..... ...++...+...+.+  ..+..+|..
T Consensus        47 ~~~E~~il~~l~~----~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~  121 (285)
T cd05632          47 ALNEKQILEKVNS----QFVVNLAYAY-ETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRE  121 (285)
T ss_pred             HHHHHHHHHHcCC----cCceeEEEEE-ecCCEEEEEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            3455555555432    1122222222 2344578999999999998754322 223444444433332  346888999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||+||++++  ++.++++|||++..++.....       ....+...+++++....+......|++++...+.
T Consensus       122 ~iiH~dikp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~-------~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~  192 (285)
T cd05632         122 NTVYRDLKPENILLDD--YGHIRISDLGLAVKIPEGESI-------RGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIY  192 (285)
T ss_pred             CeeecCCCHHHEEECC--CCCEEEecCCcceecCCCCcc-------cCCCCCcCccChHHhcCCCCCcccchHHHHHHHH
Confidence            9999999999999986  789999999998766533211       0123456677788877666777889999887665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       193 ~l~  195 (285)
T cd05632         193 EMI  195 (285)
T ss_pred             HHH
Confidence            554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.44  E-value=1.2e-12  Score=137.51  Aligned_cols=180  Identities=18%  Similarity=0.178  Sum_probs=118.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++||+|++|+||+|..  +|+.||||+.......                                         ...-+
T Consensus        10 ~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~-----------------------------------------~~~~~   48 (277)
T cd06640          10 ERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAE-----------------------------------------DEIED   48 (277)
T ss_pred             hhcccCCCeEEEEEEEccCCEEEEEEEEeccccH-----------------------------------------HHHHH
Confidence            5699999999999998  5899999987321100                                         01123


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~  452 (765)
                      +.+|..-+.++.     +++  +++++.  ......++||||++|++|.+...  ....+...+...+.+  ..+..+|.
T Consensus        49 ~~~e~~~l~~l~-----h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~--~~~l~~~~~~~~~~~l~~~l~~lh~  119 (277)
T cd06640          49 IQQEITVLSQCD-----SPY--VTKYYGSYLKGTKLWIIMEYLGGGSALDLLR--AGPFDEFQIATMLKEILKGLDYLHS  119 (277)
T ss_pred             HHHHHHHHHhCC-----CCC--EeeEEEEEEECCEEEEEEecCCCCcHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            444544444331     222  233332  23456899999999999988653  223444444333322  33677899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      .|++|+|++|+||+++.  ++.++++|||++..+.......      ....++..++.++....+..++..|++++...+
T Consensus       120 ~~ivH~dl~p~Nil~~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il  191 (277)
T cd06640         120 EKKIHRDIKAANVLLSE--QGDVKLADFGVAGQLTDTQIKR------NTFVGTPFWMAPEVIQQSAYDSKADIWSLGITA  191 (277)
T ss_pred             CCccCcCCChhhEEEcC--CCCEEEcccccceeccCCcccc------ccccCcccccCHhHhccCCCccHHHHHHHHHHH
Confidence            99999999999999986  8899999999998776543211      011234456677777666677788999988766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       192 ~el~  195 (277)
T cd06640         192 IELA  195 (277)
T ss_pred             HHHH
Confidence            6554

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.44  E-value=1.1e-12  Score=137.14  Aligned_cols=185  Identities=18%  Similarity=0.171  Sum_probs=120.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|+.  +|+.||||+.+.......                                         .-+
T Consensus         7 ~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~-----------------------------------------~~~   45 (277)
T cd06917           7 ELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDD-----------------------------------------VSD   45 (277)
T ss_pred             hheeccCCceEEEEEEcCCCcEEEEEEecCCCCchh-----------------------------------------HHH
Confidence            5799999999999998  689999998754321110                                         002


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~G  454 (765)
                      +.+|...+.++..  ..++++.-+.-+....+..+++|||++|++|.++....  .++...+...  .+...+..+|..|
T Consensus        46 ~~~e~~~l~~l~~--~~~~~vi~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~l~~~~~~~i~~~i~~~l~~lh~~~  121 (277)
T cd06917          46 IQREVALLSQLRQ--SQPPNITKYYGSYLKGPRLWIIMEYAEGGSVRTLMKAG--PIAEKYISVIIREVLVALKYIHKVG  121 (277)
T ss_pred             HHHHHHHHHHhcc--CCCCCeeeEeeeeeeCCEEEEEEecCCCCcHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            3344444444432  12333322222223345679999999999998875332  3343333322  2334467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~-~~~~~D~~~l~~~~~  533 (765)
                      ++|+|++|.||++++  ++.++++|||.+..+........      ...+...+++++....|. .+...|++++...+.
T Consensus       122 i~H~dl~p~ni~i~~--~~~~~l~dfg~~~~~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~  193 (277)
T cd06917         122 VIHRDIKAANILVTN--TGNVKLCDFGVAALLNQNSSKRS------TFVGTPYWMAPEVITEGKYYDTKADIWSLGITIY  193 (277)
T ss_pred             cccCCcCHHHEEEcC--CCCEEEccCCceeecCCCccccc------cccCCcceeCHHHhccCCccccchhHHHHHHHHH
Confidence            999999999999986  88999999999988765432111      012344566677665443 356789999987766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       194 ~ll  196 (277)
T cd06917         194 EMA  196 (277)
T ss_pred             HHH
Confidence            654

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.44  E-value=3.1e-12  Score=131.62  Aligned_cols=185  Identities=13%  Similarity=0.066  Sum_probs=122.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|+.  +|+.|++|.........                                        ...-+
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~----------------------------------------~~~~~   45 (256)
T cd08529           6 NKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNR----------------------------------------REREE   45 (256)
T ss_pred             EEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCH----------------------------------------HHHHH
Confidence            5799999999999998  68999999763211000                                        01123


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      +.+|.+.+.++.     ++++.-..-+.......+++|||++|.+|.++.... ....+...+...+.  ...+..+|..
T Consensus        46 ~~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~  120 (256)
T cd08529          46 AIDEARVLAKLD-----SSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSK  120 (256)
T ss_pred             HHHHHHHHHhcC-----CCCeehheeeeccCCEEEEEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            444555444432     232222222222335579999999999999865432 22344444443332  2346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|.||+++.  ++.+++.|||++..+.......      ....+...++++++...+...+..|++++...+.
T Consensus       121 ~i~h~dl~~~nili~~--~~~~~l~df~~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~  192 (256)
T cd08529         121 KILHRDIKSLNLFLDA--YDNVKIGDLGVAKLLSDNTNFA------NTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLY  192 (256)
T ss_pred             CcccCCCCcceEEEeC--CCCEEEcccccceeccCccchh------hccccCccccCHHHhcCCCCCCccchHHHHHHHH
Confidence            9999999999999986  7899999999998776532211      1123456677888888777788899999987665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       193 ~l~  195 (256)
T cd08529         193 ECC  195 (256)
T ss_pred             HHH
Confidence            554

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.44  E-value=8.6e-13  Score=142.51  Aligned_cols=185  Identities=17%  Similarity=0.149  Sum_probs=116.2

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .||.|++|.||+|+.  +|+.||||+.++..... .                               ++. .      .+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~-~-------------------------------~~~-~------~~   42 (316)
T cd05619           2 MLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLM-D-------------------------------DDV-E------CT   42 (316)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh-c-------------------------------chH-H------HH
Confidence            589999999999998  58899999885432100 0                               000 0      11


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~Gf  455 (765)
                      ..|...+..   .+ ++++|.-..-+.......+++|||++|++|.+.... ....+...+...  .+...+..+|..|+
T Consensus        43 ~~e~~~l~~---~~-~hp~iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~~~~~~qi~~al~~LH~~~i  117 (316)
T cd05619          43 MVEKRVLSL---AW-EHPFLTHLYCTFQTKENLFFVMEYLNGGDLMFHIQS-CHKFDLPRATFYAAEIICGLQFLHSKGI  117 (316)
T ss_pred             HHHHHHHHh---cc-CCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            222222211   11 233332112222334557899999999999876432 122333332222  22334788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|+||.||+++.  ++.++|+|||++..........      .-..++..++++++......+...|++++.-.+.++
T Consensus       118 vHrdikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el  189 (316)
T cd05619         118 VYRDLKLDNILLDT--DGHIKIADFGMCKENMLGDAKT------CTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEM  189 (316)
T ss_pred             EeCCCCHHHEEECC--CCCEEEccCCcceECCCCCCce------eeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHH
Confidence            99999999999986  7899999999987532211100      112356778888888776777888999998777665


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       190 ~  190 (316)
T cd05619         190 L  190 (316)
T ss_pred             H
Confidence            4

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.44  E-value=1.9e-13  Score=146.93  Aligned_cols=193  Identities=19%  Similarity=0.214  Sum_probs=116.1

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+|||.|++|.|+.|..  +|+.||||-.                  .+.++.                .-..+...+|+
T Consensus        27 ~~~iG~GAyGvVcsA~~~~t~~~VAIKKi------------------~~~F~~----------------~~~akRtlREl   72 (359)
T KOG0660|consen   27 IEPIGRGAYGVVCSAKDKRTGEKVAIKKI------------------LNPFEN----------------QIDAKRTLREL   72 (359)
T ss_pred             cccccCcceeeEEEEEEcCCCCEeehhhh------------------hhhhhc----------------hHHHHHHHHHH
Confidence            48999999999999999  6999999943                  111110                00123334454


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHHHHHHHHHhCC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVESYLEQILSHG  454 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li~~~L~qi~~~G  454 (765)
                      -+.+..+     .+|+.....|..|....+ -..-++|+|++ +..|..+....+ ...+..+..-..+-..++.+|+.|
T Consensus        73 klLr~~~-----HeNIi~l~di~~p~~~~~-f~DvYiV~elM-etDL~~iik~~~~L~d~H~q~f~YQiLrgLKyiHSAn  145 (359)
T KOG0660|consen   73 KLLRHLR-----HENIIGLLDIFRPPSRDK-FNDVYLVFELM-ETDLHQIIKSQQDLTDDHAQYFLYQILRGLKYIHSAN  145 (359)
T ss_pred             HHHHHhc-----CCCcceEEeecccccccc-cceeEEehhHH-hhHHHHHHHcCccccHHHHHHHHHHHHHhcchhhccc
Confidence            4433322     112222233444522221 24569999999 445655543222 111222222223333467789999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHH-HHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG-LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~-l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      ++|||+||+|++++.  +..++++|||+++.+++..... +.+.+..-.-+.+    +.+..+.-.+...|++++.-.+.
T Consensus       146 ViHRDLKPsNll~n~--~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAP----Elll~~~~Yt~aiDiWSvGCI~A  219 (359)
T KOG0660|consen  146 VIHRDLKPSNLLLNA--DCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAP----ELLLNSSEYTKAIDIWSVGCILA  219 (359)
T ss_pred             ccccccchhheeecc--CCCEEeccccceeeccccCcccchhcceeeeeecCH----HHHhccccccchhhhhhhhHHHH
Confidence            999999999999996  8899999999999996431111 1222222122333    34455666778899999998777


Q ss_pred             HHHH
Q 004254          534 FFLN  537 (765)
Q Consensus       534 ~~l~  537 (765)
                      +|+.
T Consensus       220 EmL~  223 (359)
T KOG0660|consen  220 EMLT  223 (359)
T ss_pred             HHHc
Confidence            7664

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.44  E-value=1.2e-12  Score=142.31  Aligned_cols=180  Identities=17%  Similarity=0.195  Sum_probs=118.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|+.  +|..||+|+.+......                                   .      .-+
T Consensus        11 ~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~-----------------------------------~------~~~   49 (333)
T cd06650          11 SELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPA-----------------------------------I------RNQ   49 (333)
T ss_pred             ccccCCCCEEEEEEEECCCCcEEEEEEeecccCHH-----------------------------------H------HHH
Confidence            5799999999999999  58999999875432211                                   0      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh-
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS-  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~-  452 (765)
                      +.+|++.+..+.     +++| .+..++. .....+|||||++|++|.++.... ...+...+....  +-..+..+|. 
T Consensus        50 ~~~E~~~l~~l~-----h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~l~~~l~~lH~~  122 (333)
T cd06650          50 IIRELQVLHECN-----SPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKKA-GRIPEQILGKVSIAVIKGLTYLREK  122 (333)
T ss_pred             HHHHHHHHHHCC-----CCcccceeEEEE-ECCEEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            345555555442     2332 2223332 345689999999999999875322 123333222222  2223566775 


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      .|++|+|+||+||+++.  ++.++|+|||++..+......        ...++..++++++...+..+...|++++...+
T Consensus       123 ~~ivH~dlkp~Nili~~--~~~~kL~Dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il  192 (333)
T cd06650         123 HKIMHRDVKPSNILVNS--RGEIKLCDFGVSGQLIDSMAN--------SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSL  192 (333)
T ss_pred             CCEEecCCChhhEEEcC--CCCEEEeeCCcchhhhhhccc--------cCCCCccccCHHHhcCCCCCcHHHHHHHHHHH
Confidence            58999999999999986  789999999998766432211        12356677888888766667778999998766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       193 ~~l~  196 (333)
T cd06650         193 VEMA  196 (333)
T ss_pred             HHHH
Confidence            6554

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.43  E-value=6.6e-13  Score=145.66  Aligned_cols=185  Identities=18%  Similarity=0.196  Sum_probs=124.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH-
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI-  375 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El-  375 (765)
                      +-||.|.-|+||+|+.  .++.||||+.                                  |+...-+        ++ 
T Consensus        32 e~IG~G~sa~V~~A~c~p~~e~VAIK~i----------------------------------nLEkc~~--------~ld   69 (516)
T KOG0582|consen   32 EVIGVGASAVVYLARCIPTNEVVAIKII----------------------------------NLEKCNN--------DLD   69 (516)
T ss_pred             EEEeccceeEeeeeeecccCCEEEEEEe----------------------------------ehhhhhh--------hHH
Confidence            5699999999999998  6999999987                                  1111111        11 


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhh-hhhcCCCHHHHHHHHHHH--HHHHHHh
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQS-LDELGVDRKRLGRYAVES--YLEQILS  452 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~-l~~~g~d~~~ia~~li~~--~L~qi~~  452 (765)
                      ..++|..+|..+     ++|+|.--..---.....|+||-|+.|+++.++.. .-..|++...|+..+-+.  .|.++|.
T Consensus        70 ~l~kE~~~msl~-----~HPNIv~~~~sFvv~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~  144 (516)
T KOG0582|consen   70 ALRKEVQTMSLI-----DHPNIVTYHCSFVVDSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQ  144 (516)
T ss_pred             HHHHHHHHhhhc-----CCCCcceEEEEEEecceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHh
Confidence            234566666655     33433211111112356799999999999999754 334577777776665444  4888999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChh-hHHHHHHHHHHHhhcCHHHHHHHHHH--cCCCCCCCCHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN-IREGLLEAFYGIYEKDADKVLQAMVQ--MGVLVPTGDTTAVR  529 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~-~r~~l~~l~~ai~~~D~~~i~~~l~~--lG~~~~~~D~~~l~  529 (765)
                      +|.+|||+|+||||++.  +|.|+|.|||....+-.. .|..+ ++  ...-+.+.+|+++++.  .--+.-+.|+++|.
T Consensus       145 ~G~IHRdvKAgnILi~~--dG~VkLadFgvsa~l~~~G~R~~~-rf--~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfG  219 (516)
T KOG0582|consen  145 NGHIHRDVKAGNILIDS--DGTVKLADFGVSASLFDSGDRQVT-RF--NTFVGTPCWMAPEVLMQQLHGYDFKADIWSFG  219 (516)
T ss_pred             cCceecccccccEEEcC--CCcEEEcCceeeeeecccCceeeE-ee--ccccCcccccChHHhhhcccCccchhhhhhhh
Confidence            99999999999999996  999999999988766433 23222 21  3345688899998842  22334567888887


Q ss_pred             HHHHHH
Q 004254          530 RTAQFF  535 (765)
Q Consensus       530 ~~~~~~  535 (765)
                      -.+-++
T Consensus       220 ITA~EL  225 (516)
T KOG0582|consen  220 ITACEL  225 (516)
T ss_pred             HHHHHH
Confidence            655443

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.43  E-value=1.5e-12  Score=140.41  Aligned_cols=183  Identities=20%  Similarity=0.149  Sum_probs=116.8

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      -||.|++|.||+|+.  +|+.||||+.+......  .                              ++       .-.+
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~------------------------------~~-------~~~~   42 (318)
T cd05570           2 VLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQ--D------------------------------DD-------VECT   42 (318)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhh--h------------------------------hH-------HHHH
Confidence            489999999999999  58899999874321000  0                              00       0012


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      ..|.+.+....    ++++  +++++.  +.....++||||++|++|.+.... ...++...+...+  +-..+..+|..
T Consensus        43 ~~e~~il~~~~----~h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~-~~~l~~~~~~~~~~qi~~~l~~LH~~  115 (318)
T cd05570          43 MTEKRVLALAG----KHPF--LTQLHSCFQTKDRLFFVMEYVNGGDLMFHIQR-SGRFDEPRARFYAAEIVLGLQFLHER  115 (318)
T ss_pred             HHHHHHHHhcc----CCCC--ccceeeEEEcCCEEEEEEcCCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            23333332221    2333  233332  334567999999999999775432 2234444333322  22346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|.||+++.  ++.++|+|||++..........      ....++..++++++...+..++..|++++.-.+.
T Consensus       116 ~ivH~dlkp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~  187 (318)
T cd05570         116 GIIYRDLKLDNVLLDS--EGHIKIADFGMCKEGILGGVTT------STFCGTPDYIAPEILSYQPYGPAVDWWALGVLLY  187 (318)
T ss_pred             CeEccCCCHHHeEECC--CCcEEecccCCCeecCcCCCcc------cceecCccccCHHHhcCCCCCcchhhhhHHHHHH
Confidence            9999999999999986  8899999999886532111100      1123567788898887777778889999987666


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       188 ~l~  190 (318)
T cd05570         188 EML  190 (318)
T ss_pred             HHh
Confidence            554

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.43  E-value=1.7e-12  Score=135.19  Aligned_cols=185  Identities=15%  Similarity=0.177  Sum_probs=118.8

Q ss_pred             ccccccceeEEEEEEe--C---CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--K---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~---G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||.|++|.||+|++  +   ...||||+.+++.....                                         
T Consensus        10 ~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~-----------------------------------------   48 (266)
T cd05033          10 KVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQ-----------------------------------------   48 (266)
T ss_pred             eEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHH-----------------------------------------
Confidence            6899999999999998  2   35799998865432110                                         


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~  451 (765)
                      .-+|..|...+.++.    +..-+.+...+ ......+++|||++|++|.++.......++...+...+.+  ..+..+|
T Consensus        49 ~~~~~~e~~~l~~l~----h~~i~~~~~~~-~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh  123 (266)
T cd05033          49 RLDFLTEASIMGQFD----HPNIIRLEGVV-TKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLS  123 (266)
T ss_pred             HHHHHHHHHHHHhCC----CCCcceEeEEE-ecCCceEEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            113444554444432    21112222222 2345579999999999999875433333455544443322  3367889


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..|++|+|++|.||++++  ++.++++|||++..+...... +..   ........+++++....+..++..|++++.-.
T Consensus       124 ~~~i~H~di~p~nili~~--~~~~~l~dfg~~~~~~~~~~~-~~~---~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~  197 (266)
T cd05033         124 EMNYVHRDLAARNILVNS--NLVCKVSDFGLSRRLEDSEAT-YTT---KGGKIPIRWTAPEAIAYRKFTSASDVWSFGIV  197 (266)
T ss_pred             hCCcccCCCCcceEEEcC--CCCEEECccchhhcccccccc-eec---cCCCCCccccChhhhccCCCccccchHHHHHH
Confidence            999999999999999986  889999999999887521111 000   00112345677777766677788899998866


Q ss_pred             HHHH
Q 004254          532 AQFF  535 (765)
Q Consensus       532 ~~~~  535 (765)
                      +.++
T Consensus       198 l~~l  201 (266)
T cd05033         198 MWEV  201 (266)
T ss_pred             HHHH
Confidence            5544

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.43  E-value=4.1e-13  Score=145.26  Aligned_cols=121  Identities=15%  Similarity=0.136  Sum_probs=82.3

Q ss_pred             cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecce
Q 004254          406 YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM  483 (765)
Q Consensus       406 ~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv  483 (765)
                      .....++||||++|++|.+.... ...++...+...+  +-..+..+|..|++|+|+||.||+++.  ++.++|+|||++
T Consensus        67 ~~~~~~lv~e~~~~g~L~~~l~~-~~~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~--~~~~kl~Dfg~a  143 (330)
T cd05586          67 TDSDLYLVTDYMSGGELFWHLQK-EGRFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDA--TGHIALCDFGLS  143 (330)
T ss_pred             cCCeEEEEEcCCCCChHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECC--CCCEEEecCCcC
Confidence            34567999999999998775432 2234444433332  223478899999999999999999986  889999999998


Q ss_pred             eccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHHHHH
Q 004254          484 GSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       484 ~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~~~~~~  535 (765)
                      .........      .....++..+++++...-+ ......|++++...+.++
T Consensus       144 ~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~el  190 (330)
T cd05586         144 KANLTDNKT------TNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEM  190 (330)
T ss_pred             cCCCCCCCC------ccCccCCccccCHHHHcCCCCCCCccceeccccEEEEe
Confidence            764322111      0112356778888877532 346678999887655444

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.43  E-value=1.3e-12  Score=135.97  Aligned_cols=185  Identities=14%  Similarity=0.105  Sum_probs=118.2

Q ss_pred             cccccceeEEEEEEe----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       300 PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .||.|++|.||+|++    ++..||||+..+.....                                   ..      -
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~-----------------------------------~~------~   40 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKS-----------------------------------VR------D   40 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChH-----------------------------------HH------H
Confidence            389999999999987    25679999875542211                                   00      1


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~  453 (765)
                      +|.+|+.-+.++    .+..-+.+..++ + ....++||||++|++|.+.........+...+...+.+  ..+..+|..
T Consensus        41 ~~~~E~~~l~~l----~h~~ii~~~~~~-~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~  114 (257)
T cd05115          41 EMMREAEIMHQL----DNPYIVRMIGVC-E-AEALMLVMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGK  114 (257)
T ss_pred             HHHHHHHHHHhc----CCCCeEEEEEEE-c-CCCeEEEEEeCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            244455544443    222223333322 1 34579999999999999875433334455544443333  336778999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||+||+++.  ++.++++|||++..+.........   .........+++++....+..+...|++++.-.+.
T Consensus       115 ~i~H~dlkp~nil~~~--~~~~kl~dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~  189 (257)
T cd05115         115 NFVHRDLAARNVLLVN--QHYAKISDFGLSKALGADDSYYKA---RSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMW  189 (257)
T ss_pred             CeeecccchheEEEcC--CCcEEeccCCccccccCCccceec---cCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHH
Confidence            9999999999999985  789999999998866543221100   00011124567777777777777889999887665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       190 el~  192 (257)
T cd05115         190 EAF  192 (257)
T ss_pred             HHh
Confidence            543

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.43  E-value=5e-13  Score=143.86  Aligned_cols=183  Identities=15%  Similarity=0.175  Sum_probs=117.7

Q ss_pred             ccccccceeEEEEEEe-----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||.|++|.||+++.     +|+.||||+.+.....                                        ...
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~----------------------------------------~~~   41 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLK----------------------------------------VRD   41 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhh----------------------------------------hhh
Confidence            4689999999999875     4799999987321100                                        001


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  451 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~  451 (765)
                      ...+.+|.+.+.++.     +++|.-..-+.+.....++||||++|++|.+.... ...++...+...+  +...+..+|
T Consensus        42 ~~~~~~E~~~l~~l~-----h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~l~~~~~~~~~~qi~~~l~~lH  115 (318)
T cd05582          42 RVRTKMERDILAEVN-----HPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSK-EVMFTEEDVKFYLAELALALDHLH  115 (318)
T ss_pred             HHHHHHHHHHHHhCC-----CCCcccEEEEEEcCCEEEEEEcCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence            112344555444442     23322221222334567999999999999876432 2223444333332  233478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..|++|+|+||.||+++.  ++.++|+|||++...........      ...+...+++++...........|++++...
T Consensus       116 ~~~i~H~dlkp~Nil~~~--~~~~kL~Dfg~~~~~~~~~~~~~------~~~g~~~y~aPE~~~~~~~~~~~DiwslG~i  187 (318)
T cd05582         116 SLGIIYRDLKPENILLDE--EGHIKLTDFGLSKESIDHEKKAY------SFCGTVEYMAPEVVNRRGHTQSADWWSFGVL  187 (318)
T ss_pred             HCCEecCCCCHHHeEECC--CCcEEEeeccCCcccCCCCCcee------cccCChhhcCHHHHcCCCCCCccceeccceE
Confidence            999999999999999986  88999999999876544321111      1235677888888876666777899988765


Q ss_pred             HHHH
Q 004254          532 AQFF  535 (765)
Q Consensus       532 ~~~~  535 (765)
                      +.++
T Consensus       188 l~el  191 (318)
T cd05582         188 MFEM  191 (318)
T ss_pred             eeee
Confidence            5444

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.43  E-value=1.5e-12  Score=136.67  Aligned_cols=186  Identities=16%  Similarity=0.160  Sum_probs=118.8

Q ss_pred             ccccccceeEEEEEEeC--C-----eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK--G-----EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~--G-----~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||.|++|.||+|...  +     ..|++|..+......                                   ..   
T Consensus        11 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~-----------------------------------~~---   52 (283)
T cd05048          11 EELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPK-----------------------------------VQ---   52 (283)
T ss_pred             hcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHH-----------------------------------HH---
Confidence            67999999999999982  3     579999874332111                                   01   


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRK  436 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~~  436 (765)
                         -+|.+|.+.+.++.     ++++.-..-+.......+++|||++|++|.++.....               ..++..
T Consensus        53 ---~~~~~ei~~l~~l~-----h~~i~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  124 (283)
T cd05048          53 ---QEFRQEAELMSDLQ-----HPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCS  124 (283)
T ss_pred             ---HHHHHHHHHHHhcC-----CcccceEEEEEcCCCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHH
Confidence               12344555444432     2332222222233456799999999999988653221               122333


Q ss_pred             HHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004254          437 RLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV  514 (765)
Q Consensus       437 ~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~  514 (765)
                      .+...+  +...+..+|..|++|+|++|.||++++  ++.++|+|||++..+.........    .....+..+++++..
T Consensus       125 ~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~--~~~~~L~dfg~~~~~~~~~~~~~~----~~~~~~~~y~aPE~~  198 (283)
T cd05048         125 DFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGE--GLTVKISDFGLSRDIYSADYYRVQ----SKSLLPVRWMPPEAI  198 (283)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeccccccceEEEcC--CCcEEECCCcceeecccccccccc----CCCcccccccCHHHh
Confidence            333322  233468889999999999999999986  789999999998866433211100    001124567888887


Q ss_pred             HcCCCCCCCCHHHHHHHHHHHH
Q 004254          515 QMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       515 ~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ..+..++..|++++...+.+++
T Consensus       199 ~~~~~~~~sDv~slG~il~el~  220 (283)
T cd05048         199 LYGKFTTESDIWSFGVVLWEIF  220 (283)
T ss_pred             ccCcCchhhhHHHHHHHHHHHH
Confidence            7777788889999987766654

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.43  E-value=2.2e-12  Score=131.30  Aligned_cols=179  Identities=16%  Similarity=0.156  Sum_probs=116.0

Q ss_pred             ccccccceeEEEEEEe-C-------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCC--CcccchHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-K-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD--GAKRDWVAIYDECA  368 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~-------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~--~~~~d~~~i~~E~~  368 (765)
                      .+|++|--+-||.|.. +       +.+|||||-|....+-        +....++.. .+...  ..+.+|..++..++
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~F--------k~~~~y~~~-~~rf~~~~~k~~~~~~~~~wa   73 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEF--------KNRDKYIKD-DYRFKDRFSKLNPRKIIRMWA   73 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeE--------cChhhhccC-CcccccCcCCCCHHHHHHHHH
Confidence            3789999999999987 3       3799999998765432        111222211 11111  11235555544433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCC---HHHHHHHHHHH
Q 004254          369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVD---RKRLGRYAVES  445 (765)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d---~~~ia~~li~~  445 (765)
                               .+|++|+.++++     .++.+|.++.  ..+.+|||||++|..+... .+.....+   ...+...++..
T Consensus        74 ---------~kE~r~L~rl~~-----~Gv~vP~pi~--~~~~~lvME~Ig~~~~~~~-~Lkd~~~~~~~~~~i~~~i~~~  136 (197)
T cd05146          74 ---------EKEMHNLKRMQK-----AGIPCPEVVV--LKKHVLVMSFIGDDQVPAP-KLKDAKLNDEEMKNAYYQVLSM  136 (197)
T ss_pred             ---------HHHHHHHHHHHH-----cCCCCCeEEE--ecCCEEEEEEcCCCCccch-hhhccccCHHHHHHHHHHHHHH
Confidence                     578899999876     3688999995  5889999999987533211 11111222   23334444455


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004254          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (765)
Q Consensus       446 ~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l  513 (765)
                      +..++|..|++|+||+|.||++.   ++++++||||.+-..+......+       +.+|...+...+
T Consensus       137 l~~l~H~~glVHGDLs~~NIL~~---~~~v~iIDF~qav~~~hp~a~~~-------l~RD~~ni~~fF  194 (197)
T cd05146         137 MKQLYKECNLVHADLSEYNMLWH---DGKVWFIDVSQSVEPTHPHGLEF-------LFRDCRNVIQFF  194 (197)
T ss_pred             HHHHHHhCCeecCCCCHHHEEEE---CCcEEEEECCCceeCCCCCHHHH-------HHHHHHHHHHHh
Confidence            45555899999999999999997   57899999999998886554433       235555554433

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.43  E-value=8.3e-13  Score=152.15  Aligned_cols=122  Identities=13%  Similarity=0.117  Sum_probs=87.0

Q ss_pred             eEEEEeecCCCChhhhhhhhh---cCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeeccee
Q 004254          410 QILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  484 (765)
Q Consensus       410 ~vLVMEyieG~~L~d~~~l~~---~g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~  484 (765)
                      .++||||++|++|.+......   ..+....+...+  +-..++++|..|++|+|+||.||+++.  ++.++|+|||++.
T Consensus       114 i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~--~~~vkL~DFGls~  191 (496)
T PTZ00283        114 IALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCS--NGLVKLGDFGFSK  191 (496)
T ss_pred             EEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeC--CCCEEEEecccCe
Confidence            479999999999988643211   123333333333  234578899999999999999999986  8899999999988


Q ss_pred             ccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004254          485 SISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       485 ~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l~  537 (765)
                      .+.........    ....+++.++++++...+..+...|++++...+.+++.
T Consensus       192 ~~~~~~~~~~~----~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLlt  240 (496)
T PTZ00283        192 MYAATVSDDVG----RTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLT  240 (496)
T ss_pred             ecccccccccc----ccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            76543221111    11235677889999887777888999999877766553

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.43  E-value=1.8e-13  Score=145.54  Aligned_cols=187  Identities=16%  Similarity=0.133  Sum_probs=119.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +-|+.|+||.||||+.  +++-||+|-.+++-++.                       +.  .+         +-.+|+ 
T Consensus        82 nrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~-----------------------GF--PI---------tsLREI-  126 (419)
T KOG0663|consen   82 NRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKE-----------------------GF--PI---------TSLREI-  126 (419)
T ss_pred             hhcccCcceeEEEeccCCcceeEEeeecccccccC-----------------------CC--cc---------hhHHHH-
Confidence            5799999999999999  69999999886654322                       11  11         112333 


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHH--HHHHHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLG--RYAVESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia--~~li~~~L~qi~~~  453 (765)
                           .-+.+++    +..-|.|-.|+..- -++.+||||||+- .|..+...-...+...++-  ...+-..++++|..
T Consensus       127 -----niLl~~~----H~NIV~vkEVVvG~~~d~iy~VMe~~Eh-DLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~  196 (419)
T KOG0663|consen  127 -----NILLKAR----HPNIVEVKEVVVGSNMDKIYIVMEYVEH-DLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDN  196 (419)
T ss_pred             -----HHHHhcC----CCCeeeeEEEEeccccceeeeeHHHHHh-hHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhc
Confidence                 3333332    33345555555432 2456999999985 2333221111223333222  22233447889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      .++|||+||.|+|+++  .|.+++.|||+++.+... ...+..++..+..+-++    .++..-..+...|++++.-.+.
T Consensus       197 wilHRDLK~SNLLm~~--~G~lKiaDFGLAR~ygsp-~k~~T~lVVTLWYRaPE----LLLG~~tyst~iDMWSvGCI~a  269 (419)
T KOG0663|consen  197 WILHRDLKTSNLLLSH--KGILKIADFGLAREYGSP-LKPYTPLVVTLWYRAPE----LLLGAKTYSTAVDMWSVGCIFA  269 (419)
T ss_pred             eeEecccchhheeecc--CCcEEecccchhhhhcCC-cccCcceEEEeeecCHH----HhcCCcccCcchhhhhHHHHHH
Confidence            9999999999999996  899999999999998765 23455555555555443    3444455677789999998776


Q ss_pred             HHHH
Q 004254          534 FFLN  537 (765)
Q Consensus       534 ~~l~  537 (765)
                      +++.
T Consensus       270 E~l~  273 (419)
T KOG0663|consen  270 ELLT  273 (419)
T ss_pred             HHHh
Confidence            6653

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.42  E-value=1.8e-12  Score=133.95  Aligned_cols=186  Identities=18%  Similarity=0.193  Sum_probs=119.0

Q ss_pred             ccccccceeEEEEEEe-C--C--eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-K--G--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~--G--~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||+|++|.||+|.+ +  |  ..||||+.+++...                                   +.      
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~-----------------------------------~~------   39 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLS-----------------------------------DI------   39 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccH-----------------------------------HH------
Confidence            3689999999999998 2  3  37999988554321                                   00      


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHH--HHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQI  450 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~l--i~~~L~qi  450 (765)
                      .-+|.+|.+.+.++.    +..-+.+...+.+  ...+++|||++|++|.+...... ...+...+...+  +-..+..+
T Consensus        40 ~~~~~~e~~~l~~l~----h~~iv~~~~~~~~--~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~l  113 (257)
T cd05040          40 MDDFLKEAAIMHSLD----HENLIRLYGVVLT--HPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYL  113 (257)
T ss_pred             HHHHHHHHHHHhhcC----CCCccceeEEEcC--CeEEEEEEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHH
Confidence            112334444444442    2222333333333  66799999999999988653222 223444333322  23346788


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      |..|++|+|+||+||+++.  ++.++|+|||++..+..........   ........++.++.......+...|++++.-
T Consensus       114 H~~~i~H~di~p~nil~~~--~~~~kl~dfg~~~~~~~~~~~~~~~---~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~  188 (257)
T cd05040         114 ESKRFIHRDLAARNILLAS--DDKVKIGDFGLMRALPQNEDHYVME---EHLKVPFAWCAPESLRTRTFSHASDVWMFGV  188 (257)
T ss_pred             HhCCccccccCcccEEEec--CCEEEeccccccccccccccceecc---cCCCCCceecCHHHhcccCcCchhhhHHHHH
Confidence            9999999999999999986  7899999999998875532111000   0122344567778777666777889999887


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       189 ~l~el~  194 (257)
T cd05040         189 TLWEMF  194 (257)
T ss_pred             HHHHHH
Confidence            665544

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.42  E-value=2.3e-12  Score=134.37  Aligned_cols=200  Identities=16%  Similarity=0.066  Sum_probs=120.0

Q ss_pred             hcccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          293 FERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       293 F~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      |.++..++||+|++|+||+|..  +|+.||||..+.........                          .....+..+ 
T Consensus         1 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~--------------------------~~~~~~~~~-   53 (272)
T cd06629           1 FKWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRH--------------------------DSRQKDMVK-   53 (272)
T ss_pred             CceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhccc--------------------------chHHHHHHH-
Confidence            5566778999999999999987  69999999764321111000                          000011111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHH
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLE  448 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~  448 (765)
                           .+..|+..+..+.     ++++.-..-+.+.....++||||++|++|.+..... ..++...+...  .+-..+.
T Consensus        54 -----~~~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~  122 (272)
T cd06629          54 -----ALRSEIETLKDLD-----HLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTY-GRFEEQLVRFFTEQVLEGLA  122 (272)
T ss_pred             -----HHHHHHHHHHhcC-----CCCcceEEEEeccCCceEEEEecCCCCcHHHHHhhc-cCCCHHHHHHHHHHHHHHHH
Confidence                 2333444443332     233221122223345679999999999998865322 22333322221  2223467


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC--CCCCCCHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV--LVPTGDTT  526 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~--~~~~~D~~  526 (765)
                      .+|..|++|+|++|+||+++.  ++.++++|||++..........    ......+...+++++......  .+...|++
T Consensus       123 ~lH~~~i~H~dl~~~nil~~~--~~~~~l~d~~~~~~~~~~~~~~----~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~  196 (272)
T cd06629         123 YLHSKGILHRDLKADNLLVDA--DGICKISDFGISKKSDDIYDND----QNMSMQGSVFWMAPEVIHSYSQGYSAKVDIW  196 (272)
T ss_pred             HHhhCCeeecCCChhhEEEcC--CCeEEEeecccccccccccccc----ccccccCCccccCHHHhccccCCCCccchhH
Confidence            889999999999999999986  8899999999987654321110    001122345566676665433  56678999


Q ss_pred             HHHHHHHHHH
Q 004254          527 AVRRTAQFFL  536 (765)
Q Consensus       527 ~l~~~~~~~l  536 (765)
                      ++...+.+++
T Consensus       197 slG~~l~~l~  206 (272)
T cd06629         197 SLGCVVLEMF  206 (272)
T ss_pred             HHHHHHHHHH
Confidence            9887665544

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.42  E-value=1.6e-12  Score=135.05  Aligned_cols=183  Identities=16%  Similarity=0.131  Sum_probs=119.7

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||.|++|.||+|.. +++.||||..+++-..                                           +-+|
T Consensus        12 ~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~~-------------------------------------------~~~~   48 (261)
T cd05068          12 RKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMD-------------------------------------------PKDF   48 (261)
T ss_pred             EEecccCCccEEEEEecCCeEEEEEeeCCCccc-------------------------------------------HHHH
Confidence            6899999999999998 6788999987543110                                           1124


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      .+|.+.+.++.     ++++.-..-+.......+++|||++|++|.+...... ...+...+...+.+  ..+..+|..|
T Consensus        49 ~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~  123 (261)
T cd05068          49 LAEAQIMKKLR-----HPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQN  123 (261)
T ss_pred             HHHHHHHHHCC-----CCCccceeEEEecCCCeeeeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            45555555542     2333222222334456799999999999988653222 22444444443322  3367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||+||++++  ++.++|+|||++..+.........    + ......+++++....+..+...|++++.-.+.+
T Consensus       124 i~H~dl~p~Nil~~~--~~~~~l~dfg~~~~~~~~~~~~~~----~-~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~e  196 (261)
T cd05068         124 YIHRDLAARNVLVGE--NNICKVADFGLARVIKEDIYEARE----G-AKFPIKWTAPEAALYNRFSIKSDVWSFGILLTE  196 (261)
T ss_pred             eeeccCCcceEEEcC--CCCEEECCcceEEEccCCcccccC----C-CcCceeccCccccccCCCCchhhHHHHHHHHHH
Confidence            999999999999986  889999999999887633211100    0 011234566776666666777899998876665


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       197 l~  198 (261)
T cd05068         197 IV  198 (261)
T ss_pred             HH
Confidence            54

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.42  E-value=3.4e-12  Score=130.65  Aligned_cols=184  Identities=15%  Similarity=0.116  Sum_probs=120.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++||+|++|.||+|+.  +|++|+||........                                  +....      +
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~----------------------------------~~~~~------~   45 (254)
T cd06627           6 DLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIK----------------------------------EEALK------S   45 (254)
T ss_pred             eEEcccCCeEEEEEEEcCCCcEEEEEEecccccC----------------------------------HHHHH------H
Confidence            6899999999999998  5899999988443210                                  00011      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +.+|++.+.++.     ++++.-+.-+.......+++|||++|.+|.++.... ...+...+...+.  -..+..+|..|
T Consensus        46 ~~~e~~~l~~l~-----~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~~i~~~l~~lH~~~  119 (254)
T cd06627          46 IMQEIDLLKNLK-----HPNIVKYIGSIETSDSLYIILEYAENGSLRQIIKKF-GPFPESLVAVYVYQVLQGLAYLHEQG  119 (254)
T ss_pred             HHHHHHHHHhCC-----CCCccEEEEEEEeCCEEEEEEecCCCCcHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHhhCC
Confidence            334444444332     233222222223345679999999999998865322 2334443333322  23367789999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|++|+||+++.  ++.++++|||++..+......      .....++..++.++...........|++++...+.+
T Consensus       120 i~H~dl~p~ni~i~~--~~~~~l~d~~~~~~~~~~~~~------~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~  191 (254)
T cd06627         120 VIHRDIKAANILTTK--DGVVKLADFGVATKLNDVSKD------DASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIE  191 (254)
T ss_pred             cccCCCCHHHEEECC--CCCEEEeccccceecCCCccc------ccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHH
Confidence            999999999999986  789999999999988765432      111234666777887766666677899988876655


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       192 l~  193 (254)
T cd06627         192 LL  193 (254)
T ss_pred             HH
Confidence            44

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=8.4e-13  Score=148.97  Aligned_cols=188  Identities=20%  Similarity=0.306  Sum_probs=124.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++||-|.||.|+.++-  +...+|+|-+|.       .|+         +                 ...-...+..|-|
T Consensus       635 k~iGvGAFGeV~Lv~KvDT~~lYAmKTLrK-------aDV---------l-----------------~rnQvaHVKAERD  681 (1034)
T KOG0608|consen  635 KTIGVGAFGEVCLVRKVDTRALYAMKTLRK-------ADV---------L-----------------MRNQVAHVKAERD  681 (1034)
T ss_pred             eeecccccceeEEEeecchhhHHHHhhhHH-------HHH---------H-----------------hhhhhhhhhhhhh
Confidence            6899999999999986  345566664421       111         1                 1112234556777


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc--CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH---HHHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY--TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA---VESYLEQIL  451 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~--st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l---i~~~L~qi~  451 (765)
                      .+.||.           .++|  -+.|..+  ....|.|||||+|+.+..++  -+.|+-.+.+|+-.   +.+.++.+|
T Consensus       682 ILAEAD-----------n~WV--VrLyySFQDkdnLYFVMdYIPGGDmMSLL--IrmgIFeE~LARFYIAEltcAiesVH  746 (1034)
T KOG0608|consen  682 ILAEAD-----------NEWV--VRLYYSFQDKDNLYFVMDYIPGGDMMSLL--IRMGIFEEDLARFYIAELTCAIESVH  746 (1034)
T ss_pred             hHhhcC-----------Ccce--EEEEEEeccCCceEEEEeccCCccHHHHH--HHhccCHHHHHHHHHHHHHHHHHHHH
Confidence            777774           2333  3444433  34569999999999888763  45667667766643   345578899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccC--h--------------------------------hhH--HHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS--P--------------------------------NIR--EGLL  495 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~--~--------------------------------~~r--~~l~  495 (765)
                      ..||+|||+||+||||+.  +|.|+|.|||+|.=+-  .                                +.|  ..-.
T Consensus       747 kmGFIHRDiKPDNILIDr--dGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~  824 (1034)
T KOG0608|consen  747 KMGFIHRDIKPDNILIDR--DGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQ  824 (1034)
T ss_pred             hccceecccCccceEEcc--CCceeeeeccccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhh
Confidence            999999999999999997  9999999999986220  0                                001  1112


Q ss_pred             HHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          496 EAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       496 ~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +++...+-+++.+++++++.-.-.....|-+.+...+.+++
T Consensus       825 r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~  865 (1034)
T KOG0608|consen  825 RILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEML  865 (1034)
T ss_pred             hhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHh
Confidence            23333445778888888887655566778888776665543

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.41  E-value=1.1e-12  Score=144.00  Aligned_cols=188  Identities=17%  Similarity=0.201  Sum_probs=115.8

Q ss_pred             hhcccC-cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004254          292 VFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (765)
Q Consensus       292 iF~~fd-~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (765)
                      +...|. .+.||+|++|.||+|..  .++.||||+........                                  +..
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~   67 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQ----------------------------------THA   67 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCc----------------------------------hhH
Confidence            334443 37899999999999998  58999999874322110                                  000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee-----ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH-
Q 004254          369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA-  442 (765)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~-----e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l-  442 (765)
                      .      ++.+|...+..+    .+..-+.+..++.     +.....++||||++|. +.+...   ...+...+...+ 
T Consensus        68 ~------~~~~E~~~l~~l----~h~~ii~~~~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~---~~~~~~~~~~~~~  133 (364)
T cd07875          68 K------RAYRELVLMKCV----NHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDAN-LCQVIQ---MELDHERMSYLLY  133 (364)
T ss_pred             H------HHHHHHHHHHhc----CCCCccccceeecccccccccCeEEEEEeCCCCC-HHHHHH---hcCCHHHHHHHHH
Confidence            1      122233323222    1211122222221     1123468999999884 333221   123333332222 


Q ss_pred             -HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC
Q 004254          443 -VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP  521 (765)
Q Consensus       443 -i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~  521 (765)
                       +-..+..+|..|++|+|+||.||+++.  ++.++|+|||++.........       .-..+...++++++.......+
T Consensus       134 qi~~aL~~LH~~~ivH~Dlkp~NIll~~--~~~~kL~DfG~a~~~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~  204 (364)
T cd07875         134 QMLCGIKHLHSAGIIHRDLKPSNIVVKS--DCTLKILDFGLARTAGTSFMM-------TPYVVTRYYRAPEVILGMGYKE  204 (364)
T ss_pred             HHHHHHHHHhhCCeecCCCCHHHEEECC--CCcEEEEeCCCccccCCCCcc-------cCCcccCCcCCHHHHhCCCCCc
Confidence             233578899999999999999999986  889999999999876543210       1112456677888877766777


Q ss_pred             CCCHHHHHHHHHHHH
Q 004254          522 TGDTTAVRRTAQFFL  536 (765)
Q Consensus       522 ~~D~~~l~~~~~~~l  536 (765)
                      ..|++++...+.+++
T Consensus       205 ~~DiwSlG~il~ell  219 (364)
T cd07875         205 NVDIWSVGCIMGEMI  219 (364)
T ss_pred             hhhHHhHHHHHHHHH
Confidence            889999988776654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.41  E-value=4.4e-13  Score=137.99  Aligned_cols=184  Identities=18%  Similarity=0.242  Sum_probs=120.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||+|+....-...                                  ....      .
T Consensus         5 ~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~----------------------------------~~~~------~   44 (260)
T PF00069_consen    5 KKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEE----------------------------------EERE------E   44 (260)
T ss_dssp             EEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHH----------------------------------HHHH------H
T ss_pred             EEEEeCCCEEEEEEEECCCCeEEEEEEeccccccc----------------------------------cccc------h
Confidence            5799999999999999  57899999885432211                                  0000      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      ...|+..+.++.     ++.|.-..-+.......+++|||++|.+|.++.. ....++...+...+..  ..+..+|..|
T Consensus        45 ~~~e~~~~~~l~-----~~~i~~~~~~~~~~~~~~~v~~~~~~~~L~~~l~-~~~~~~~~~~~~~~~qi~~~L~~Lh~~~  118 (260)
T PF00069_consen   45 NIREIKILRRLR-----HPNIVQILDVFQDDNYLYIVMEYCPGGSLQDYLQ-KNKPLSEEEILKIAYQILEALAYLHSKG  118 (260)
T ss_dssp             HHHHHHHHHHHT-----BTTBCHEEEEEEESSEEEEEEEEETTEBHHHHHH-HHSSBBHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhcccccc-----cccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            112555555552     2333322333333667799999999999988654 2333444444433332  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~-lG~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|++|.||+++.  ++.++|+|||.+..++.....      .....++..+.+++... ........|++++...+.
T Consensus       119 i~H~dikp~NIl~~~--~~~~~l~Dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~  190 (260)
T PF00069_consen  119 IVHRDIKPENILLDE--NGEVKLIDFGSSVKLSENNEN------FNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILY  190 (260)
T ss_dssp             EEESSBSGGGEEEST--TSEEEESSGTTTEESTSTTSE------BSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHH
T ss_pred             ccccccccccccccc--ccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccc
Confidence            999999999999985  899999999998754111100      01123455667777776 566677789999887765


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       191 ~l~  193 (260)
T PF00069_consen  191 ELL  193 (260)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            554

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.41  E-value=2.7e-12  Score=134.83  Aligned_cols=188  Identities=18%  Similarity=0.210  Sum_probs=120.2

Q ss_pred             hhhhhcccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHH
Q 004254          289 LDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE  366 (765)
Q Consensus       289 ~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E  366 (765)
                      ++++|...  +.||+|++|.||+|..  +|+.||||+.......                                    
T Consensus         2 ~~~~~~~~--~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~------------------------------------   43 (277)
T cd06641           2 PEELFTKL--EKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAE------------------------------------   43 (277)
T ss_pred             HHHhhhhh--eeEeecCCeEEEEEEECCCCcEEEEEEeccccch------------------------------------
Confidence            34555533  4699999999999987  5899999976321100                                    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH-
Q 004254          367 CASVLYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE-  444 (765)
Q Consensus       367 ~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~-  444 (765)
                           ...-++.+|...+.++.     ++++ .+...+ ......++||||++|+++.++..  ....+...+...+.. 
T Consensus        44 -----~~~~~~~~e~~~l~~l~-----h~~iv~~~~~~-~~~~~~~lv~e~~~~~~l~~~i~--~~~~~~~~~~~~~~~l  110 (277)
T cd06641          44 -----DEIEDIQQEITVLSQCD-----SPYVTKYYGSY-LKDTKLWIIMEYLGGGSALDLLE--PGPLDETQIATILREI  110 (277)
T ss_pred             -----HHHHHHHHHHHHHHhcC-----CCCEeEEEEEE-EeCCeEEEEEEeCCCCcHHHHHh--cCCCCHHHHHHHHHHH
Confidence                 00123445555444432     2332 222222 33456799999999999987643  223444444443322 


Q ss_pred             -HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCC
Q 004254          445 -SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTG  523 (765)
Q Consensus       445 -~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~  523 (765)
                       ..+..+|..|++|+|++|+||+++.  ++.++++|||++..+.......      ....++..++.++....+...+..
T Consensus       111 ~~~l~~lh~~~i~h~dl~p~Ni~i~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~~~~~~  182 (277)
T cd06641         111 LKGLDYLHSEKKIHRDIKAANVLLSE--HGEVKLADFGVAGQLTDTQIKR------NTFVGTPFWMAPEVIKQSAYDSKA  182 (277)
T ss_pred             HHHHHHHccCCeecCCCCHHhEEECC--CCCEEEeecccceecccchhhh------ccccCCccccChhhhccCCCCchh
Confidence             2367789999999999999999985  7899999999988776532110      111234455667766656666678


Q ss_pred             CHHHHHHHHHHH
Q 004254          524 DTTAVRRTAQFF  535 (765)
Q Consensus       524 D~~~l~~~~~~~  535 (765)
                      |++++...+.++
T Consensus       183 Dv~slG~~l~~l  194 (277)
T cd06641         183 DIWSLGITAIEL  194 (277)
T ss_pred             hHHHHHHHHHHH
Confidence            998887665544

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.41  E-value=4e-12  Score=123.94  Aligned_cols=182  Identities=18%  Similarity=0.202  Sum_probs=118.4

Q ss_pred             ccccceeEEEEEEeC--CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          301 IAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       301 IgsaSiGQVhrA~l~--G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      ||+|++|+||+++..  |++++||+.+++....                                         .+-.+.
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~-----------------------------------------~~~~~~   39 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS-----------------------------------------LLEELL   39 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchh-----------------------------------------HHHHHH
Confidence            689999999999994  9999999986543321                                         112344


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  456 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~Gff  456 (765)
                      +|.+.+.++.+     +++.-+.-+.......+++|||++|.+|.++........+...+...+  +...+..+|..|++
T Consensus        40 ~e~~~~~~l~~-----~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~  114 (215)
T cd00180          40 REIEILKKLNH-----PNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGII  114 (215)
T ss_pred             HHHHHHHhcCC-----CCeeeEeeeeecCCeEEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCee
Confidence            55555554432     233333333333457899999999999998754332234444433333  22346889999999


Q ss_pred             ccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHHHHH
Q 004254          457 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       457 HaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~~~~~~  535 (765)
                      |+|++|+||++++ .+++++++|||.+........      .......+..++.++....+ ......|..++...+..+
T Consensus       115 H~dl~~~ni~~~~-~~~~~~l~d~~~~~~~~~~~~------~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l  187 (215)
T cd00180         115 HRDLKPENILLDS-DNGKVKLADFGLSKLLTSDKS------LLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL  187 (215)
T ss_pred             ccCCCHhhEEEeC-CCCcEEEecCCceEEccCCcc------hhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH
Confidence            9999999999984 258899999999998876542      01112234455556665554 555667888877555433

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.41  E-value=1.9e-12  Score=134.81  Aligned_cols=187  Identities=15%  Similarity=0.192  Sum_probs=117.3

Q ss_pred             cccccccceeEEEEEEe--CCe---EEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGE---EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~---~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      .+.||.|++|+||+|++  +|.   .|+||..+++.....                                        
T Consensus        10 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~----------------------------------------   49 (268)
T cd05063          10 QKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQ----------------------------------------   49 (268)
T ss_pred             eeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHH----------------------------------------
Confidence            36899999999999998  343   799998755432110                                        


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  450 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi  450 (765)
                       .-+|.+|++.+.++    .+..-+.+...+ ......+++|||++|++|.+.........+...+...+  +...+..+
T Consensus        50 -~~~~~~e~~~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~l  123 (268)
T cd05063          50 -RQDFLSEASIMGQF----SHHNIIRLEGVV-TKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYL  123 (268)
T ss_pred             -HHHHHHHHHHHhcC----CCCCeeEEEEEE-ccCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence             01234454433333    222222222222 23356799999999999988754332233444433332  22346888


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      |..|++|+|+||.||++++  ++.++++|||+...+..........   ........++.++....+..+...|++++.-
T Consensus       124 H~~~i~H~dlkp~Nili~~--~~~~kl~dfg~~~~~~~~~~~~~~~---~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~  198 (268)
T cd05063         124 SDMNYVHRDLAARNILVNS--NLECKVSDFGLSRVLEDDPEGTYTT---SGGKIPIRWTAPEAIAYRKFTSASDVWSFGI  198 (268)
T ss_pred             HHCCeeccccchhhEEEcC--CCcEEECCCccceecccccccceec---cCCCcCceecCHHHhhcCCcChHhHHHHHHH
Confidence            9999999999999999986  8899999999988775433222110   0001123456777776666677789998876


Q ss_pred             HHHHH
Q 004254          531 TAQFF  535 (765)
Q Consensus       531 ~~~~~  535 (765)
                      .+.++
T Consensus       199 il~el  203 (268)
T cd05063         199 VMWEV  203 (268)
T ss_pred             HHHHH
Confidence            65543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.41  E-value=1.9e-12  Score=133.14  Aligned_cols=186  Identities=20%  Similarity=0.201  Sum_probs=119.2

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||.|++|.||+|.+ +|+.|++|+.+.....                                   +.      .-.+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~-----------------------------------~~------~~~~   39 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPP-----------------------------------DL------KRKF   39 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCH-----------------------------------HH------HHHH
Confidence            3689999999999999 5999999976432211                                   00      1123


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~Gf  455 (765)
                      .+|.+.+..+     +++++.-...+.......+++|||++|.+|.++........+...+......  ..+..+|..|+
T Consensus        40 ~~e~~~l~~l-----~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i  114 (251)
T cd05041          40 LQEAEILKQY-----DHPNIVKLIGVCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNC  114 (251)
T ss_pred             HHHHHHHHhC-----CCCCeEEEEEEEecCCCeEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            4444433333     2233332222334456679999999999998875433233444444433322  34678899999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|++|.||+++.  ++.++|+|||++......... ..   .........++.++....+......|++++...+.++
T Consensus       115 ~h~di~p~nili~~--~~~~~l~d~g~~~~~~~~~~~-~~---~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l  188 (251)
T cd05041         115 IHRDLAARNCLVGE--NNVLKISDFGMSREEEGGIYT-VS---DGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWET  188 (251)
T ss_pred             ehhhcCcceEEEcC--CCcEEEeeccccccccCCcce-ec---cccCcceeccCChHhhccCCCCcchhHHHHHHHHHHH
Confidence            99999999999986  889999999998866522100 00   0000112346677777667777888999998776655


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       189 ~  189 (251)
T cd05041         189 F  189 (251)
T ss_pred             H
Confidence            4

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.41  E-value=1.3e-12  Score=140.40  Aligned_cols=184  Identities=14%  Similarity=0.095  Sum_probs=117.1

Q ss_pred             ccccccceeEEEEEEe--CCe----EEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~----~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +.||+|++|+||+|++  +|+    .||||+.++.....                                   .     
T Consensus        13 ~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~-----   52 (316)
T cd05108          13 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK-----------------------------------A-----   52 (316)
T ss_pred             eeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHH-----------------------------------H-----
Confidence            6899999999999997  444    48999874322111                                   0     


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeee-ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQ  449 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~-e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~q  449 (765)
                       .-++..|+..+..+     ++++|  .+.+. ......+++|||++++++.+........++...+.....  ...+..
T Consensus        53 -~~~~~~e~~~l~~l-----~h~ni--v~~~g~~~~~~~~~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~  124 (316)
T cd05108          53 -NKEILDEAYVMASV-----DNPHV--CRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNY  124 (316)
T ss_pred             -HHHHHHHHHHHHhC-----CCCCC--CeEEEEEcCCCceeeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHH
Confidence             11234444444433     22332  22222 123456899999999999886543333344444433332  234788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..|++|+|+||.||+++.  ++.++|+|||++..+.......-.    ........+++++....+..+...|++++.
T Consensus       125 LH~~~iiH~dlkp~Nill~~--~~~~kl~DfG~a~~~~~~~~~~~~----~~~~~~~~y~apE~~~~~~~~~~~Di~slG  198 (316)
T cd05108         125 LEERRLVHRDLAARNVLVKT--PQHVKITDFGLAKLLGADEKEYHA----EGGKVPIKWMALESILHRIYTHQSDVWSYG  198 (316)
T ss_pred             HHhcCeeccccchhheEecC--CCcEEEccccccccccCCCcceec----cCCccceeecChHHhccCCCCchhhhHHHH
Confidence            99999999999999999986  789999999999877643321100    000112346677777666777788999998


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      -.+.+++
T Consensus       199 v~l~el~  205 (316)
T cd05108         199 VTVWELM  205 (316)
T ss_pred             HHHHHHH
Confidence            7665543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.41  E-value=8.3e-13  Score=142.33  Aligned_cols=187  Identities=18%  Similarity=0.193  Sum_probs=115.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                        .....
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------------~~~~~   45 (338)
T cd07859           6 EVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHV----------------------------------------SDATR   45 (338)
T ss_pred             EEEeecCCeEEEEEEECCCCCEEEEEEechhhccc----------------------------------------hhHHH
Confidence            5799999999999998  68999999774211100                                        00113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC----CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT----TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  450 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s----t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi  450 (765)
                      +.+|++.+.++.    +..-+.+..++....    ...++||||++| .|.+... ....++...+...+  +-..+..+
T Consensus        46 ~~~E~~~l~~l~----hpniv~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~-~~~~~~~~~~~~i~~qi~~aL~~L  119 (338)
T cd07859          46 ILREIKLLRLLR----HPDIVEIKHIMLPPSRREFKDIYVVFELMES-DLHQVIK-ANDDLTPEHHQFFLYQLLRALKYI  119 (338)
T ss_pred             HHHHHHHHHhCC----CCCEeeecceEeccCCCCCceEEEEEecCCC-CHHHHHH-hcccCCHHHHHHHHHHHHHHHHHH
Confidence            445555555442    222222222322111    236999999975 5665432 11223433333322  23447889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc--CCCCCCCCHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM--GVLVPTGDTTAV  528 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l--G~~~~~~D~~~l  528 (765)
                      |..|++|+|+||.||+++.  ++.++|+|||++..........   ....-..++..++++++...  +...+..|++++
T Consensus       120 H~~~ivH~dlkp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~~---~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSl  194 (338)
T cd07859         120 HTANVFHRDLKPKNILANA--DCKLKICDFGLARVAFNDTPTA---IFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSI  194 (338)
T ss_pred             HHCCeecCCCCHHHeEECC--CCcEEEccCccccccccccCcc---ccccCCCCCCCcCCHHHHhccccccCchhHHHHH
Confidence            9999999999999999986  8999999999988653321111   00111234566778887654  456677899999


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      .-.+.+++
T Consensus       195 Gvvl~el~  202 (338)
T cd07859         195 GCIFAEVL  202 (338)
T ss_pred             HHHHHHHH
Confidence            87766654

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.41  E-value=1.5e-12  Score=157.36  Aligned_cols=193  Identities=17%  Similarity=0.117  Sum_probs=122.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                 ...      .-.
T Consensus         8 ~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~---------------------------------e~~------~~r   48 (932)
T PRK13184          8 RLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSEN---------------------------------PLL------KKR   48 (932)
T ss_pred             EEEecCCCEEEEEEEECCCCcEEEEEEECcccccC---------------------------------HHH------HHH
Confidence            6799999999999998  58999999885433211                                 001      113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-h---------cCCCHHHHHHHH--HH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-E---------LGVDRKRLGRYA--VE  444 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~---------~g~d~~~ia~~l--i~  444 (765)
                      |.+|++.+.++.     +++|.-..-+.......+++|||++|++|.++.... .         ...+...+...+  +.
T Consensus        49 flrEi~ILs~L~-----HPNIVkl~~v~~d~~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa  123 (932)
T PRK13184         49 FLREAKIAADLI-----HPGIVPVYSICSDGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKIC  123 (932)
T ss_pred             HHHHHHHHHhCC-----CcCcCeEEEEEeeCCEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHH
Confidence            455555444432     233221111223345679999999999998865321 0         011112222221  22


Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHH-H----------HH-HHHHhhcCHHHHHHH
Q 004254          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL-L----------EA-FYGIYEKDADKVLQA  512 (765)
Q Consensus       445 ~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l-~----------~l-~~ai~~~D~~~i~~~  512 (765)
                      ..+..+|..|++|+|+||+||+++.  ++.++++|||++..+........ .          .. ...-..+++.+++++
T Consensus       124 ~AL~yLHs~GIIHRDLKPeNILLd~--dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE  201 (932)
T PRK13184        124 ATIEYVHSKGVLHRDLKPDNILLGL--FGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPE  201 (932)
T ss_pred             HHHHHHHHCCccccCCchheEEEcC--CCCEEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHH
Confidence            3477899999999999999999986  88999999999987632111000 0          00 001123677888899


Q ss_pred             HHHcCCCCCCCCHHHHHHHHHHHHH
Q 004254          513 MVQMGVLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       513 l~~lG~~~~~~D~~~l~~~~~~~l~  537 (765)
                      ...-+..+...|++++...+.+++.
T Consensus       202 ~l~g~~~S~kSDIWSLGVILyELLT  226 (932)
T PRK13184        202 RLLGVPASESTDIYALGVILYQMLT  226 (932)
T ss_pred             HhcCCCCCcHhHHHHHHHHHHHHHH
Confidence            8877667778899999887766653

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.41  E-value=3.5e-12  Score=124.21  Aligned_cols=132  Identities=23%  Similarity=0.339  Sum_probs=97.1

Q ss_pred             cccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      -+|++.|..++||+++..|..|++|+..++..                                           ...++
T Consensus         3 ~~~l~~G~~~~vy~~~~~~~~~~lK~~~~~~~-------------------------------------------~~~~~   39 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVANKKYVVRIPGNGTE-------------------------------------------LLINR   39 (170)
T ss_pred             eeecCCcccCceEEEEECCeEEEEEeCCCCcc-------------------------------------------cccCH
Confidence            36899999999999999999999998755421                                           01245


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCC---
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHG---  454 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~G---  454 (765)
                      ..|++++..+.+.      ..+|+++....+..+++|||++|.++.+..     ..+ ...... +...+..+|..+   
T Consensus        40 ~~E~~~l~~l~~~------~~~P~~~~~~~~~~~lv~e~i~G~~l~~~~-----~~~-~~~~~~-l~~~l~~LH~~~~~~  106 (170)
T cd05151          40 ENEAENSKLAAEA------GIGPKLYYFDPETGVLITEFIEGSELLTED-----FSD-PENLEK-IAKLLKKLHSSPLPD  106 (170)
T ss_pred             HHHHHHHHHHHHh------CCCCceEEEeCCCCeEEEEecCCCcccccc-----ccC-HHHHHH-HHHHHHHHhCCCCCC
Confidence            6777777777652      237888887777789999999999887531     011 122222 334566778776   


Q ss_pred             --ccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004254          455 --FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (765)
Q Consensus       455 --ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (765)
                        ++|+|+||+||+++   +++++++|||.++.-++
T Consensus       107 ~~~~HgD~~~~Nil~~---~~~~~liDf~~a~~~~~  139 (170)
T cd05151         107 LVPCHNDLLPGNFLLD---DGRLWLIDWEYAGMNDP  139 (170)
T ss_pred             ceeecCCCCcCcEEEE---CCeEEEEecccccCCCh
Confidence              59999999999997   56899999999886543

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.41  E-value=1.2e-12  Score=134.33  Aligned_cols=137  Identities=21%  Similarity=0.288  Sum_probs=96.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      .+||+||||-+|.|..  +|++||||+-...++.-                                            .
T Consensus        21 rkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hp--------------------------------------------q   56 (341)
T KOG1163|consen   21 RKIGSGSFGDIYLGISITSGEEVAIKLESSKAKHP--------------------------------------------Q   56 (341)
T ss_pred             EeecCCchhheeeeeeccCCceEEEEeecccCCCc--------------------------------------------c
Confidence            6899999999999998  79999999875444321                                            1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCC--CeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH---HHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTT--PQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE---SYLEQIL  451 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st--~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~---~~L~qi~  451 (765)
                      +..|++--..++      ..+-+|.+++-.+.  -++||||.. |.+|.|+.......++-+.+. .+++   .-++.+|
T Consensus        57 L~yEskvY~iL~------~g~GiP~i~~y~~e~~ynvlVMdLL-GPsLEdLfnfC~R~ftmkTvL-MLaDQml~RiEyvH  128 (341)
T KOG1163|consen   57 LLYESKVYRILQ------GGVGIPHIRHYGTEKDYNVLVMDLL-GPSLEDLFNFCSRRFTMKTVL-MLADQMLSRIEYVH  128 (341)
T ss_pred             hhHHHHHHHHhc------cCCCCchhhhhccccccceeeeecc-CccHHHHHHHHhhhhhHHhHH-HHHHHHHHHHHHHH
Confidence            233444333332      35678888875443  359999997 889999876655444444322 1222   2367789


Q ss_pred             hCCccccCCCCCcEEEee-cCCCcEEEEeecceeccC
Q 004254          452 SHGFFHADPHPGNIAVDD-VNGGRLIFYDFGMMGSIS  487 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~-~~~g~l~LiDFGlv~~L~  487 (765)
                      ..+|+|+|+||+|+|..- ..-.++.+||||+++.+-
T Consensus       129 ~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~  165 (341)
T KOG1163|consen  129 LRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYR  165 (341)
T ss_pred             hhccccccCCccceeeccccccceEEEEeccchhhhc
Confidence            999999999999999862 123589999999998753

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.41  E-value=1.5e-12  Score=136.09  Aligned_cols=186  Identities=16%  Similarity=0.105  Sum_probs=119.4

Q ss_pred             ccccccceeEEEEEEe-C------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-K------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||.|++|.||+|+. +      ++.||||+.+......                                        
T Consensus        11 ~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------------   50 (280)
T cd05049          11 RELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASND----------------------------------------   50 (280)
T ss_pred             hhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHH----------------------------------------
Confidence            5799999999999987 2      4789999864321110                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-------------cCCCHHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-------------LGVDRKRL  438 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-------------~g~d~~~i  438 (765)
                       .+-+|.+|++.+.++.     ++++.-..-+.......+++|||++|++|.+......             .......+
T Consensus        51 -~~~~~~~e~~~l~~l~-----~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~  124 (280)
T cd05049          51 -ARKDFEREAELLTNFQ-----HENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQL  124 (280)
T ss_pred             -HHHHHHHHHHHHHhcC-----CCCchheeeEEecCCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHH
Confidence             0124556666555543     2333222223334467899999999999988653211             11122222


Q ss_pred             HHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004254          439 GRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  516 (765)
Q Consensus       439 a~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l  516 (765)
                      ...+  +-..+..+|..|++|+|++|+||+++.  ++.++|+|||++..+........    .........++++++...
T Consensus       125 ~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~--~~~~kl~d~g~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~  198 (280)
T cd05049         125 LQIAVQIASGMVYLASQHFVHRDLATRNCLVGY--DLVVKIGDFGMSRDVYTTDYYRV----GGHTMLPIRWMPPESIMY  198 (280)
T ss_pred             HHHHHHHHHHHHHHhhCCeeccccccceEEEcC--CCeEEECCcccceecccCcceec----CCCCcccceecChhhhcc
Confidence            2222  223367889999999999999999986  79999999999876533211000    000112356788888888


Q ss_pred             CCCCCCCCHHHHHHHHHHHH
Q 004254          517 GVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       517 G~~~~~~D~~~l~~~~~~~l  536 (765)
                      +..++..|++++.-.+.+++
T Consensus       199 ~~~~~~~Di~slG~il~e~~  218 (280)
T cd05049         199 RKFTTESDVWSFGVVLWEIF  218 (280)
T ss_pred             CCcchhhhHHHHHHHHHHHH
Confidence            88888899999987666554

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.41  E-value=3.4e-12  Score=131.71  Aligned_cols=182  Identities=14%  Similarity=0.071  Sum_probs=117.6

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||.|++|+||+|.+ +++.+|||+.+.+...                                           +-+|
T Consensus        10 ~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~-------------------------------------------~~~~   46 (256)
T cd05112          10 QEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMS-------------------------------------------EEDF   46 (256)
T ss_pred             eeecCcccceEEEEEEeCCCeEEEEECCCCCCC-------------------------------------------HHHH
Confidence            6799999999999998 5889999987433210                                           1134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~Gf  455 (765)
                      ..|.+.+.++.     ++++.-..-+.+.....+++|||++|+.|.+.............+.....  -..+..+|..|+
T Consensus        47 ~~e~~~l~~l~-----~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i  121 (256)
T cd05112          47 IEEAQVMMKLS-----HPKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNV  121 (256)
T ss_pred             HHHHHHHHhCC-----CCCeeeEEEEEccCCceEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            45555555542     23222211122334567999999999999886543322234443333222  234677899999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|+||+||+++.  ++.++++|||++..+........     ........+++++...-+..+...|++++...+.++
T Consensus       122 ~h~dl~p~ni~i~~--~~~~~l~d~g~~~~~~~~~~~~~-----~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el  194 (256)
T cd05112         122 IHRDLAARNCLVGE--NQVVKVSDFGMTRFVLDDQYTSS-----TGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEV  194 (256)
T ss_pred             cccccccceEEEcC--CCeEEECCCcceeecccCccccc-----CCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHH
Confidence            99999999999985  78999999999886643311000     000112356677777666677778999887665544

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.41  E-value=2.3e-12  Score=135.27  Aligned_cols=185  Identities=15%  Similarity=0.081  Sum_probs=116.1

Q ss_pred             ccccccceeEEEEEEe--CCe----EEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~----~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +.||.|++|.||+|++  +|+    +||||+.+......                                         
T Consensus        13 ~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~-----------------------------------------   51 (279)
T cd05109          13 KVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPK-----------------------------------------   51 (279)
T ss_pred             eecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHH-----------------------------------------
Confidence            6899999999999997  555    58999874332111                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQI  450 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi  450 (765)
                      .+-++.+|...+..+     +++++....-+ ......+++|||++++.+.+........+....+...+.  -..+..+
T Consensus        52 ~~~~~~~e~~~l~~~-----~~~~i~~~~~~-~~~~~~~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~l  125 (279)
T cd05109          52 ANKEILDEAYVMAGV-----GSPYVCRLLGI-CLTSTVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYL  125 (279)
T ss_pred             HHHHHHHHHHHHHhc-----CCCCCceEEEE-EcCCCcEEEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence            011233444433332     22333222212 123456899999999999886543222344444443333  3347888


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      |+.|++|+|+||+||++.+  ++.++|+|||++..++........    .-......++.++....+..+...|++++.-
T Consensus       126 H~~~iiH~dlkp~Nil~~~--~~~~kL~dfG~~~~~~~~~~~~~~----~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~  199 (279)
T cd05109         126 EEVRLVHRDLAARNVLVKS--PNHVKITDFGLARLLDIDETEYHA----DGGKVPIKWMALESILHRRFTHQSDVWSYGV  199 (279)
T ss_pred             HHCCeeccccccceEEEcC--CCcEEECCCCceeecccccceeec----CCCccchhhCCHHHhccCCCCchhHHHHHHH
Confidence            9999999999999999985  789999999999877543221000    0001234566777776666677789999886


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       200 ~l~el~  205 (279)
T cd05109         200 TVWELM  205 (279)
T ss_pred             HHHHHH
Confidence            665543

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.40  E-value=7.1e-13  Score=157.78  Aligned_cols=120  Identities=19%  Similarity=0.250  Sum_probs=89.6

Q ss_pred             CCeEEEEeecCCCChhhhhhhhhcCCCHHHHH---HHHHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeeccee
Q 004254          408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLG---RYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  484 (765)
Q Consensus       408 t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia---~~li~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~  484 (765)
                      ...||||||++||.|-.+..  ..+.-++..|   ..-+-..+..+|..|++|||+||+|||++.  .|.|+|.|||.+-
T Consensus       148 ~~LYlVMdY~pGGDlltLlS--k~~~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~--~GHikLADFGsCl  223 (1317)
T KOG0612|consen  148 RYLYLVMDYMPGGDLLTLLS--KFDRLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDK--SGHIKLADFGSCL  223 (1317)
T ss_pred             cceEEEEecccCchHHHHHh--hcCCChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecc--cCcEeeccchhHH
Confidence            44689999999999877653  2221223332   223345588899999999999999999986  8999999999999


Q ss_pred             ccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCCHHHHHHHHHHHH
Q 004254          485 SISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       485 ~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-----G~~~~~~D~~~l~~~~~~~l  536 (765)
                      .++.+-.   ..  ..+.-++|+|+.|+++..     |.+.+..|-+++...+++|+
T Consensus       224 km~~dG~---V~--s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMl  275 (1317)
T KOG0612|consen  224 KMDADGT---VR--SSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEML  275 (1317)
T ss_pred             hcCCCCc---EE--eccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHH
Confidence            8874311   11  123358999999988863     67788899999998887776

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.40  E-value=3.3e-12  Score=131.13  Aligned_cols=183  Identities=17%  Similarity=0.192  Sum_probs=118.4

Q ss_pred             ccccccceeEEEEEEeC--C----eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK--G----EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~--G----~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +.||.|++|+||+|+..  +    ..||+|+.+++....                                         
T Consensus         5 ~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------------   43 (258)
T smart00219        5 KKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQ-----------------------------------------   43 (258)
T ss_pred             ceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChH-----------------------------------------
Confidence            57999999999999993  3    889999986543211                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceee--eccCCCeEEEEeecCCCChhhhhhhhhcC-CCHHHHHHHHHH--HHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDELG-VDRKRLGRYAVE--SYL  447 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy--~e~st~~vLVMEyieG~~L~d~~~l~~~g-~d~~~ia~~li~--~~L  447 (765)
                      ..-++..|.+.+..+     +++++  ++.+  .......+++|||++|++|.++....... .+...+...+.+  ..+
T Consensus        44 ~~~~~~~e~~~l~~l-----~~~~i--~~~~~~~~~~~~~~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l  116 (258)
T smart00219       44 QIEEFLREARIMRKL-----DHPNI--VKLLGVCTEEEPLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGM  116 (258)
T ss_pred             HHHHHHHHHHHHHhc-----CCCch--heEEEEEcCCCeeEEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHH
Confidence            011233344433333     22322  2233  22235679999999999998875432222 444444433322  346


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004254          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~  527 (765)
                      ..+|..|++|+|++|+||++++  ++.++++|||++.......-  +..   ........++.++....+......|+++
T Consensus       117 ~~lh~~~~~h~dl~~~nil~~~--~~~~~l~dfg~~~~~~~~~~--~~~---~~~~~~~~y~~Pe~~~~~~~~~~~Di~s  189 (258)
T smart00219      117 EYLESKNFIHRDLAARNCLVGE--NLVVKISDFGLSRDLYDDDY--YKK---KGGKLPIRWMAPESLKDGKFTSKSDVWS  189 (258)
T ss_pred             HHHhcCCeeecccccceEEEcc--CCeEEEcccCCceecccccc--ccc---ccCCCcccccChHHhccCCCCcchhHHH
Confidence            7889999999999999999986  78999999999987765411  000   0011234566777776677788889999


Q ss_pred             HHHHHHHHH
Q 004254          528 VRRTAQFFL  536 (765)
Q Consensus       528 l~~~~~~~l  536 (765)
                      +.-.+.+++
T Consensus       190 lG~i~~~l~  198 (258)
T smart00219      190 FGVLLWEIF  198 (258)
T ss_pred             HHHHHHHHH
Confidence            876655443

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.40  E-value=2.3e-12  Score=133.35  Aligned_cols=190  Identities=15%  Similarity=0.043  Sum_probs=120.2

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||.|++|+||+|..  +|++|++|+.+.......                              .       ..+--
T Consensus         7 ~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~------------------------------~-------~~~~~   49 (263)
T cd06625           7 GKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPE------------------------------T-------KKEVN   49 (263)
T ss_pred             cceecCCCceEEEEEEEcCCCcEEEEEEEeecccchh------------------------------h-------HHHHH
Confidence            36899999999999998  589999998754321110                              0       00001


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHH---HHHHHHHHHHHHHHh
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR---LGRYAVESYLEQILS  452 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~---ia~~li~~~L~qi~~  452 (765)
                      ++.+|+..+.++     +++++....-+.+.....+++|||++|++|.+..... ...+...   ++..+ -..+..+|.
T Consensus        50 ~~~~e~~~l~~l-----~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l-~~~l~~lH~  122 (263)
T cd06625          50 ALECEIQLLKNL-----QHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLKAY-GALTETVTRKYTRQI-LEGVEYLHS  122 (263)
T ss_pred             HHHHHHHHHHhC-----CCCCeeeeEEEEccCCeEEEEEEECCCCcHHHHHHHh-CCCCHHHHHHHHHHH-HHHHHHHHh
Confidence            344555555444     2344433333334455779999999999998764321 1223222   22222 234678899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      .|++|+|+||+||+++.  +++++|+|||++..+........   ......+...++++++..........|++++.-.+
T Consensus       123 ~~i~H~dl~p~nilv~~--~~~~~l~dfg~~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il  197 (263)
T cd06625         123 NMIVHRDIKGANILRDS--AGNVKLGDFGASKRLQTICSSGT---GMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTV  197 (263)
T ss_pred             CCeecCCCCHHHEEEcC--CCCEEEeecccceeccccccccc---cccCCCcCccccCcceeccCCCCchhhhHHHHHHH
Confidence            99999999999999985  78999999999887654221110   00111234456677776665566778999988766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       198 ~el~  201 (263)
T cd06625         198 VEML  201 (263)
T ss_pred             HHHH
Confidence            6554

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.40  E-value=3.2e-12  Score=132.31  Aligned_cols=183  Identities=14%  Similarity=0.100  Sum_probs=117.6

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||.|++|.||+|++ ++..||+|..+.+-.                                           .+-+|
T Consensus        10 ~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~-------------------------------------------~~~~~   46 (256)
T cd05114          10 KELGSGQFGVVHLGKWRAQIKVAIKAINEGAM-------------------------------------------SEEDF   46 (256)
T ss_pred             eEecCCcCceEEEEEeccCceEEEEecccCCc-------------------------------------------cHHHH
Confidence            5699999999999999 577899997633210                                           01234


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~Gf  455 (765)
                      .+|+.-+.++.     ++++.-..-+.+.....+++|||++|++|.+.........+...+...+  +-..+..+|..|+
T Consensus        47 ~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  121 (256)
T cd05114          47 IEEAKVMMKLS-----HPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSF  121 (256)
T ss_pred             HHHHHHHHHCC-----CCCceeEEEEEccCCCEEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            45555554442     2333222222334456799999999999988654322234444333332  2234678899999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|++|+||++++  ++.++++|||.+..+.......-     ........+++++.......+...|++++.-.+.++
T Consensus       122 ~H~dl~p~ni~i~~--~~~~kl~d~g~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el  194 (256)
T cd05114         122 IHRDLAARNCLVSS--TGVVKVSDFGMTRYVLDDEYTSS-----SGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEV  194 (256)
T ss_pred             cccccCcceEEEcC--CCeEEECCCCCccccCCCceecc-----CCCCCchhhCChhhcccCccchhhhhHHHHHHHHHH
Confidence            99999999999986  78999999999886643211100     001122356677776655566778999887666554


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       195 ~  195 (256)
T cd05114         195 F  195 (256)
T ss_pred             H
Confidence            3

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.40  E-value=2e-12  Score=135.98  Aligned_cols=184  Identities=15%  Similarity=0.138  Sum_probs=116.8

Q ss_pred             ccccccceeEEEEEEe------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +.||.|++|+||+|++      .+..|+||..++.....                                         
T Consensus        11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------------   49 (283)
T cd05090          11 EELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQ-----------------------------------------   49 (283)
T ss_pred             eeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHH-----------------------------------------
Confidence            6799999999999985      35789999774321100                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhc----------------CCC
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDEL----------------GVD  434 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~----------------g~d  434 (765)
                      ..-+|.+|+..+.++.     +++  +++++.  ......+++|||++|++|.++......                .++
T Consensus        50 ~~~~~~~E~~~l~~l~-----h~n--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~  122 (283)
T cd05090          50 QWGEFQQEASLMAELH-----HPN--IVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLD  122 (283)
T ss_pred             HHHHHHHHHHHHhhCC-----CCC--eeeEEEEEecCCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccC
Confidence            0113445555444442     233  233332  234567999999999999886532211                122


Q ss_pred             HHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004254          435 RKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  512 (765)
Q Consensus       435 ~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~  512 (765)
                      ...+....  +-..+..+|..|++|+|++|.||++++  ++.++++|||++..+........    ......+..+++++
T Consensus       123 ~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE  196 (283)
T cd05090         123 HGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGE--QLHVKISDLGLSREIYSADYYRV----QPKSLLPIRWMPPE  196 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEcC--CCcEEeccccccccccCCcceec----ccCCCccceecChH
Confidence            22222222  223478899999999999999999986  78899999999987644321110    01111234567777


Q ss_pred             HHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          513 MVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       513 l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ....+..++..|++++...+.+++
T Consensus       197 ~~~~~~~~~~~Dv~slG~il~el~  220 (283)
T cd05090         197 AIMYGKFSSDSDIWSFGVVLWEIF  220 (283)
T ss_pred             HhccCCCCchhhhHHHHHHHHHHH
Confidence            776677778889999987766554

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.40  E-value=9.1e-13  Score=147.34  Aligned_cols=174  Identities=16%  Similarity=0.166  Sum_probs=125.6

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +=+|+|+.|.||+|++.++.||||-.    ++.-+.|++-|+                                      
T Consensus       130 eWlGSGaQGAVF~Grl~netVAVKKV----~elkETdIKHLR--------------------------------------  167 (904)
T KOG4721|consen  130 EWLGSGAQGAVFLGRLHNETVAVKKV----RELKETDIKHLR--------------------------------------  167 (904)
T ss_pred             hhhccCcccceeeeeccCceehhHHH----hhhhhhhHHHHH--------------------------------------
Confidence            45899999999999999999999943    333333443333                                      


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  456 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~Gff  456 (765)
                             +++     +++|.--+-++.-+--.+++||||.-+.|.++.... ..+.+..++...  +..-++++|.+.++
T Consensus       168 -------kLk-----H~NII~FkGVCtqsPcyCIiMEfCa~GqL~~VLka~-~~itp~llv~Wsk~IA~GM~YLH~hKII  234 (904)
T KOG4721|consen  168 -------KLK-----HPNIITFKGVCTQSPCYCIIMEFCAQGQLYEVLKAG-RPITPSLLVDWSKGIAGGMNYLHLHKII  234 (904)
T ss_pred             -------hcc-----CcceeeEeeeecCCceeEEeeeccccccHHHHHhcc-CccCHHHHHHHHHHhhhhhHHHHHhhHh
Confidence                   221     122222222211222348999999999999876432 345666666553  44558889999999


Q ss_pred             ccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          457 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       457 HaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      |+|+|.-||||..  +..|+|.|||....+++...    .+   -+.++..+|+++++.-.-..+++|+++|...+-+++
T Consensus       235 HRDLKSPNiLIs~--~d~VKIsDFGTS~e~~~~ST----kM---SFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmL  305 (904)
T KOG4721|consen  235 HRDLKSPNILISY--DDVVKISDFGTSKELSDKST----KM---SFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEML  305 (904)
T ss_pred             hhccCCCceEeec--cceEEeccccchHhhhhhhh----hh---hhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHH
Confidence            9999999999996  78899999999888776411    11   134788999999999998999999999987765554

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.40  E-value=1.5e-12  Score=139.30  Aligned_cols=184  Identities=13%  Similarity=0.043  Sum_probs=111.6

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||.|++|.||+|+.  +++.||||+.+.......                                         +.
T Consensus        11 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~-----------------------------------------~~   49 (309)
T cd07872          11 LEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGA-----------------------------------------PC   49 (309)
T ss_pred             EEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCc-----------------------------------------ch
Confidence            36899999999999998  588999998743221110                                         01


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSH  453 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~  453 (765)
                      .+.+|...+.++.    + +++.-..-+.......++||||+++ .+.+.........+...+...  .+-..+..+|..
T Consensus        50 ~~~~E~~~l~~l~----h-~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~  123 (309)
T cd07872          50 TAIREVSLLKDLK----H-ANIVTLHDIVHTDKSLTLVFEYLDK-DLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRR  123 (309)
T ss_pred             hHHHHHHHHHhCC----C-CCcceEEEEEeeCCeEEEEEeCCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            2233444444432    2 3322222222334567999999997 555543222222333333222  233447889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~  532 (765)
                      |++|+|+||+||+++.  ++.++|+|||++...........      .......+++++.... +......|++++...+
T Consensus       124 ~ivH~dlkp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il  195 (309)
T cd07872         124 KVLHRDLKPQNLLINE--RGELKLADFGLARAKSVPTKTYS------NEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIF  195 (309)
T ss_pred             CeecCCCCHHHEEECC--CCCEEECccccceecCCCccccc------cccccccccCCHHHhCCCCCCcHHHHHHHHHHH
Confidence            9999999999999986  78999999999876543221100      0112345666665543 3345567888888766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       196 ~el~  199 (309)
T cd07872         196 FEMA  199 (309)
T ss_pred             HHHH
Confidence            5554

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.40  E-value=4e-12  Score=134.35  Aligned_cols=183  Identities=16%  Similarity=0.142  Sum_probs=113.7

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .||+|++|.||+|..  +|+.||||+.++.....-.                                       .+..+
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~---------------------------------------~~~~~   41 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQ---------------------------------------GETLA   41 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccch---------------------------------------HHHHH
Confidence            379999999999998  5899999988553211100                                       00011


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      ..|.. +.++.... +++.+  +..+.  ......++||||++|++|.+.... ...+....+...+  +-..+..+|..
T Consensus        42 ~~~~~-~~~~~~~~-~~~~i--~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~-~~~l~~~~~~~i~~qi~~al~~lH~~  116 (279)
T cd05633          42 LNERI-MLSLVSTG-DCPFI--VCMTYAFHTPDKLCFILDLMNGGDLHYHLSQ-HGVFSEKEMRFYATEIILGLEHMHNR  116 (279)
T ss_pred             HHHHH-HHHHHhhC-CCCcE--eEEEEEEecCCeEEEEEecCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            11211 11111111 22333  33332  234567999999999999876432 2223444333332  22347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~~~  532 (765)
                      |++|+|+||+||+++.  ++.++++|||++..++.....        ...+...+++++....+ ..+...|++++...+
T Consensus       117 ~ivH~dikp~Nil~~~--~~~~~l~dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l  186 (279)
T cd05633         117 FVVYRDLKPANILLDE--HGHVRISDLGLACDFSKKKPH--------ASVGTHGYMAPEVLQKGTAYDSSADWFSLGCML  186 (279)
T ss_pred             CcCCCCCCHHHEEECC--CCCEEEccCCcceeccccCcc--------CcCCCcCccCHHHhcCCCCCCchhhhHHHHHHH
Confidence            9999999999999985  789999999998766543211        12356667778776533 346678999988666


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       187 ~~l~  190 (279)
T cd05633         187 FKLL  190 (279)
T ss_pred             HHHH
Confidence            5544

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.40  E-value=3.1e-12  Score=139.61  Aligned_cols=85  Identities=15%  Similarity=0.103  Sum_probs=59.9

Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004254          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (765)
Q Consensus       446 ~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~  525 (765)
                      .+..+|..|++|+|++|.||+++.  ++.++++|||++..+.....  ...  .........+++++....+..+...|+
T Consensus       191 al~~lH~~~i~H~dikp~Nil~~~--~~~~kl~dfg~~~~~~~~~~--~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di  264 (343)
T cd05103         191 GMEFLASRKCIHRDLAARNILLSE--NNVVKICDFGLARDIYKDPD--YVR--KGDARLPLKWMAPETIFDRVYTIQSDV  264 (343)
T ss_pred             HHHHHHhCCeecCCCccCeEEEcC--CCcEEEEecccccccccCcc--hhh--cCCCCCCcceECcHHhcCCCCCchhhH
Confidence            367789999999999999999986  78999999999887543211  000  011122345677777766667778899


Q ss_pred             HHHHHHHHHHH
Q 004254          526 TAVRRTAQFFL  536 (765)
Q Consensus       526 ~~l~~~~~~~l  536 (765)
                      +++...+.+++
T Consensus       265 ~slG~~l~el~  275 (343)
T cd05103         265 WSFGVLLWEIF  275 (343)
T ss_pred             HHHHHHHHHHH
Confidence            99887665543

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.40  E-value=3.9e-12  Score=134.87  Aligned_cols=185  Identities=16%  Similarity=0.104  Sum_probs=118.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|..  +|+.||||...+.....                                 .+.      +-.
T Consensus         6 ~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~---------------------------------~~~------~~~   46 (285)
T cd05630           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK---------------------------------RKG------ESM   46 (285)
T ss_pred             EEeecCCCeEEEEEEEcCCCceEEEEEEehhhccc---------------------------------hHH------HHH
Confidence            5699999999999999  58999999774421110                                 000      111


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      +.+|...+.++.    +...+.+...+ ......+++|||++|++|.+.... ...+++...+...+.  -..+..+|..
T Consensus        47 ~~~E~~il~~l~----~~~i~~~~~~~-~~~~~~~lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~  121 (285)
T cd05630          47 ALNEKQILEKVN----SRFVVSLAYAY-ETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQE  121 (285)
T ss_pred             HHHHHHHHHhCC----CCCeeeeeEEE-ecCCEEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            233444444332    21112222222 223567999999999999876532 222344433333322  2346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|.||+++.  ++.++++|||++..........       -..+...++++++...+..+...|++++...+.
T Consensus       122 ~iiH~dikp~Nil~~~--~~~~~l~Dfg~~~~~~~~~~~~-------~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~  192 (285)
T cd05630         122 RIVYRDLKPENILLDD--HGHIRISDLGLAVHVPEGQTIK-------GRVGTVGYMAPEVVKNERYTFSPDWWALGCLLY  192 (285)
T ss_pred             CEEeCCCCHHHEEECC--CCCEEEeeccceeecCCCcccc-------CCCCCccccChHHHcCCCCCCccccHHHHHHHH
Confidence            9999999999999986  7899999999987665432110       012456777888887777778889999987665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       193 ~l~  195 (285)
T cd05630         193 EMI  195 (285)
T ss_pred             HHH
Confidence            544

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.40  E-value=2.9e-12  Score=134.88  Aligned_cols=177  Identities=18%  Similarity=0.150  Sum_probs=117.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++||+|++|.||+|+.  +|+.||||+...+....                                         .+-+
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~-----------------------------------------~~~~   45 (279)
T cd06619           7 EILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVE-----------------------------------------LQKQ   45 (279)
T ss_pred             eeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChH-----------------------------------------HHHH
Confidence            5799999999999998  68999999874321100                                         0113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|.+.+.++     +++++.-+.-+.......++||||++|+.+.....     .+...+....  +-..+..+|..|
T Consensus        46 ~~~E~~~l~~l-----~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~-----~~~~~~~~~~~qi~~~l~~lH~~~  115 (279)
T cd06619          46 IMSELEILYKC-----DSPYIIGFYGAFFVENRISICTEFMDGGSLDVYRK-----IPEHVLGRIAVAVVKGLTYLWSLK  115 (279)
T ss_pred             HHHHHHHHHhC-----CCCCeeeEEEEEEECCEEEEEEecCCCCChHHhhc-----CCHHHHHHHHHHHHHHHHHHHHCC
Confidence            44455444433     22333322222233456789999999998865422     1222222221  223367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||.||+++.  ++.++|+|||++..+......        ...+...+++++....+..+...|++++.-.+.+
T Consensus       116 i~H~dlkp~Nill~~--~~~~~l~dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~  185 (279)
T cd06619         116 ILHRDVKPSNMLVNT--RGQVKLCDFGVSTQLVNSIAK--------TYVGTNAYMAPERISGEQYGIHSDVWSLGISFME  185 (279)
T ss_pred             EeeCCCCHHHEEECC--CCCEEEeeCCcceeccccccc--------CCCCChhhcCceeecCCCCCCcchHHHHHHHHHH
Confidence            999999999999986  889999999998876543221        1234566777877766666778899999876665


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       186 l~  187 (279)
T cd06619         186 LA  187 (279)
T ss_pred             HH
Confidence            54

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.40  E-value=4.2e-12  Score=130.64  Aligned_cols=180  Identities=19%  Similarity=0.206  Sum_probs=120.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.|++|++|+||+|+.  +|+.|++|.......                                      .      -+
T Consensus         9 ~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--------------------------------------~------~~   44 (256)
T cd06612           9 EKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--------------------------------------L------QE   44 (256)
T ss_pred             hhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--------------------------------------H------HH
Confidence            5799999999999999  489999998632110                                      0      13


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~  453 (765)
                      +.+|.+.+.++     +++++ .+...+ ......+++|||++|.+|.++.......++...+...+.+  ..+..+|..
T Consensus        45 ~~~e~~~~~~l-----~~~~i~~~~~~~-~~~~~~~l~~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~  118 (256)
T cd06612          45 IIKEISILKQC-----DSPYIVKYYGSY-FKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSN  118 (256)
T ss_pred             HHHHHHHHHhC-----CCCcEeeeeeee-ecCCcEEEEEecCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            34444444443     22222 222222 2235679999999999999876543334454444333322  346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|+||+++.  ++.++|.|||++..+.......      ....+...++.++.......+...|++++...+.
T Consensus       119 ~i~H~dl~~~ni~~~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~  190 (256)
T cd06612         119 KKIHRDIKAGNILLNE--EGQAKLADFGVSGQLTDTMAKR------NTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAI  190 (256)
T ss_pred             CcccCCCCcceEEECC--CCcEEEcccccchhcccCcccc------ccccCCccccCHHHHhcCCCCchhhHHHHHHHHH
Confidence            9999999999999986  8899999999998876543211      1122455667777776666667789999886655


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       191 ~l~  193 (256)
T cd06612         191 EMA  193 (256)
T ss_pred             HHH
Confidence            543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.40  E-value=4.6e-12  Score=130.94  Aligned_cols=179  Identities=14%  Similarity=0.083  Sum_probs=116.8

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +.||+|++|.||+|...|+.||||..+....                                           ..-.+.
T Consensus        12 ~~ig~g~~g~v~~~~~~~~~v~iK~~~~~~~-------------------------------------------~~~~~~   48 (256)
T cd05039          12 ATIGKGEFGDVMLGDYRGQKVAVKCLKDDST-------------------------------------------AAQAFL   48 (256)
T ss_pred             eeeecCCCceEEEEEecCcEEEEEEeccchh-------------------------------------------HHHHHH
Confidence            6799999999999999999999998733211                                           001223


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc-CCCHHHHHHHH--HHHHHHHHHhCCc
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRYA--VESYLEQILSHGF  455 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~-g~d~~~ia~~l--i~~~L~qi~~~Gf  455 (765)
                      +|...+.++.     ++++.-..-+.......+++|||++|++|.+....... ......+...+  +-..+..+|..|+
T Consensus        49 ~e~~~l~~l~-----~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i  123 (256)
T cd05039          49 AEASVMTTLR-----HPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNF  123 (256)
T ss_pred             HHHHHHHhcC-----CcceeeeEEEEcCCCCeEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            3443333332     22222111122235678999999999999887543221 23333333332  2233678899999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|+||+||+++.  ++.++++|||.+.........         ......+++++....+...+..|++++...+.++
T Consensus       124 ~H~di~p~Nili~~--~~~~~l~d~g~~~~~~~~~~~---------~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l  192 (256)
T cd05039         124 VHRDLAARNVLVSE--DLVAKVSDFGLAKEASQGQDS---------GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEI  192 (256)
T ss_pred             cchhcccceEEEeC--CCCEEEccccccccccccccc---------CCCcccccCchhhcCCcCCcHHHHHHHHHHHHHH
Confidence            99999999999986  889999999999877543221         1123345667766667777778999887665544


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       193 ~  193 (256)
T cd05039         193 Y  193 (256)
T ss_pred             H
Confidence            3

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.40  E-value=4.7e-12  Score=134.07  Aligned_cols=182  Identities=19%  Similarity=0.136  Sum_probs=120.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|..  +|+.||||+.++.-...                                       ....-.
T Consensus         7 ~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------------~~~~~~   47 (290)
T cd05580           7 KTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVK---------------------------------------LKQVEH   47 (290)
T ss_pred             EEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhh---------------------------------------hhHHHH
Confidence            6799999999999999  58999999874321000                                       001113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|++.+.++.    +..-+.+...+ ......+++|||++|++|.+..... ..++...+...+  +-..+..+|..|
T Consensus        48 ~~~e~~~l~~l~----h~~i~~~~~~~-~~~~~~~~v~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~qil~~l~~lH~~~  121 (290)
T cd05580          48 VLNEKRILQSIR----HPFLVNLYGSF-QDDSNLYLVMEYVPGGELFSHLRKS-GRFPEPVARFYAAQVVLALEYLHSLD  121 (290)
T ss_pred             HHHHHHHHHhCC----CCCccceeeEE-EcCCeEEEEEecCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            445555554442    21122232332 2345679999999999998865322 233444333322  223467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||.||+++.  ++.++|+|||++..+.....         ...+...+++++...-+......|++++...+..
T Consensus       122 i~H~dl~p~nili~~--~~~~kl~dfg~~~~~~~~~~---------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~  190 (290)
T cd05580         122 IVYRDLKPENLLLDS--DGYIKITDFGFAKRVKGRTY---------TLCGTPEYLAPEIILSKGYGKAVDWWALGILIYE  190 (290)
T ss_pred             EecCCCCHHHEEECC--CCCEEEeeCCCccccCCCCC---------CCCCCccccChhhhcCCCCCccccHHHHHHHHHH
Confidence            999999999999986  78999999999988765411         1234566777777765556677899998876665


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       191 l~  192 (290)
T cd05580         191 ML  192 (290)
T ss_pred             HH
Confidence            54

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.39  E-value=6.3e-12  Score=130.41  Aligned_cols=182  Identities=17%  Similarity=0.162  Sum_probs=119.3

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||.|++|+||+|.. .+..||+|..+++....                                           -+|
T Consensus        12 ~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~~-------------------------------------------~~~   48 (260)
T cd05070          12 KKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSP-------------------------------------------ESF   48 (260)
T ss_pred             heeccccCceEEEEEecCCceeEEEEecCCCCCH-------------------------------------------HHH
Confidence            5799999999999998 67889999886532110                                           123


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      .+|+.-+.++    .+..-+.+...+  .....+++|||++|++|.+..... ....+...+...+  +-..+..+|..|
T Consensus        49 ~~E~~~l~~l----~~~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~  122 (260)
T cd05070          49 LEEAQIMKKL----RHDKLVQLYAVV--SEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMN  122 (260)
T ss_pred             HHHHHHHHhc----CCCceEEEEeEE--CCCCcEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            4444444433    222223333332  235579999999999998865321 1223433333332  223467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|++|.||++++  ++.++|+|||.+..+........     .-......+++++....+..+...|++++...+.+
T Consensus       123 i~H~di~p~Nili~~--~~~~~l~dfg~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~  195 (260)
T cd05070         123 YIHRDLRSANILVGD--GLVCKIADFGLARLIEDNEYTAR-----QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE  195 (260)
T ss_pred             cccCCCccceEEEeC--CceEEeCCceeeeeccCcccccc-----cCCCCCccccChHHHhcCCCcchhhhHHHHHHHHH
Confidence            999999999999986  78999999999987754321110     00112345777887777777778899999877665


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       196 l~  197 (260)
T cd05070         196 LV  197 (260)
T ss_pred             HH
Confidence            54

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.39  E-value=2.3e-12  Score=137.43  Aligned_cols=181  Identities=18%  Similarity=0.153  Sum_probs=118.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|..  +|+.||||.....-...                                          .-.
T Consensus        25 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~------------------------------------------~~~   62 (297)
T cd06656          25 EKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPK------------------------------------------KEL   62 (297)
T ss_pred             eeeccCCCeEEEEEEECCCCCEEEEEEEecCccch------------------------------------------HHH
Confidence            6799999999999997  69999999763211100                                          001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|...+..+     +++++.-+.-+.......++||||++|++|.++..  ....+...+...+..  ..+..+|..|
T Consensus        63 ~~~e~~~l~~~-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~~~~~l~~~L~~LH~~~  135 (297)
T cd06656          63 IINEILVMREN-----KNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT--ETCMDEGQIAAVCRECLQALDFLHSNQ  135 (297)
T ss_pred             HHHHHHHHHhC-----CCCCEeeEEEEEecCCEEEEeecccCCCCHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            23333333322     22333222223334566799999999999988653  223344444333222  3367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|++|+||+++.  ++.++++|||++..+.+.....      ....+++.++.++....+..++..|++++...+.+
T Consensus       136 i~H~dL~p~Nili~~--~~~~~l~Dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~  207 (297)
T cd06656         136 VIHRDIKSDNILLGM--DGSVKLTDFGFCAQITPEQSKR------STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIE  207 (297)
T ss_pred             cccCCCCHHHEEECC--CCCEEECcCccceEccCCccCc------CcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHH
Confidence            999999999999985  8899999999988776543211      11224556777887776666777899998876655


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       208 l~  209 (297)
T cd06656         208 MV  209 (297)
T ss_pred             HH
Confidence            44

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.39  E-value=2.3e-12  Score=141.31  Aligned_cols=181  Identities=18%  Similarity=0.165  Sum_probs=112.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+........                                  +.      ...
T Consensus        27 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~------~~~   66 (359)
T cd07876          27 KPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQ----------------------------------TH------AKR   66 (359)
T ss_pred             EEeecCCCEEEEEEEEcCCCceeEEEEecccccch----------------------------------hH------HHH
Confidence            7899999999999998  59999999874322111                                  00      011


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec-----cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQ  449 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e-----~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~q  449 (765)
                      +.+|...+..+    .+..-+.+..++..     .....++||||++|.....+.    ...+...+...+  +-..+..
T Consensus        67 ~~~E~~~l~~l----~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~----~~~~~~~~~~~~~qi~~~L~~  138 (359)
T cd07876          67 AYRELVLLKCV----NHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIH----MELDHERMSYLLYQMLCGIKH  138 (359)
T ss_pred             HHHHHHHHHhC----CCCCEeeeeeeeccCCCccccceeEEEEeCCCcCHHHHHh----ccCCHHHHHHHHHHHHHHHHH
Confidence            22333333322    12222223232221     112468999999985433221    223444433332  3345788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..|++|+|+||+||+++.  ++.++|+|||++.........       .-..++..+++++........+..|++++.
T Consensus       139 LH~~~ivHrDlkp~NIl~~~--~~~~kl~Dfg~a~~~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG  209 (359)
T cd07876         139 LHSAGIIHRDLKPSNIVVKS--DCTLKILDFGLARTACTNFMM-------TPYVVTRYYRAPEVILGMGYKENVDIWSVG  209 (359)
T ss_pred             HHhCCcccCCCCHHHEEECC--CCCEEEecCCCccccccCccC-------CCCcccCCCCCchhccCCCCCcchhhHHHH
Confidence            99999999999999999986  899999999998765432110       001234556777777666677788999998


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       210 ~il~el~  216 (359)
T cd07876         210 CIMGELV  216 (359)
T ss_pred             HHHHHHH
Confidence            7776654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.39  E-value=3.8e-12  Score=132.29  Aligned_cols=193  Identities=12%  Similarity=0.058  Sum_probs=116.8

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||.|++|+||+|.. +|+.||||..+.......                              ...+..      -.+
T Consensus         6 ~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~------------------------------~~~~~~------~~~   49 (265)
T cd06631           6 EVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVL------------------------------AAEKEY------EKL   49 (265)
T ss_pred             ceEeccCCeEEEEEEEcCCCeEEEEEeecCccchh------------------------------hHHHHH------HHH
Confidence            5799999999999988 799999998743321110                              000111      123


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~Gf  455 (765)
                      .+|+..+.++.    + +++.-..-+.......+++|||++|++|.++.... .......+...+  +-..+..+|..|+
T Consensus        50 ~~e~~~l~~l~----~-~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i  123 (265)
T cd06631          50 QEEVDLLKSLK----H-VNIVQYLGTCLDDNTISIFMEFVPGGSISSILNRF-GPLPEPVFCKYTKQILDGVAYLHNNCV  123 (265)
T ss_pred             HHHHHHHHhcC----C-CCEeeEeeEeecCCeEEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            44444444432    2 22221111222345679999999999998865321 223333333222  2234677899999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHH-HHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIRE-GLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~-~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      +|+|++|.||++++  ++.++++|||++..+...... ...... ....+...++.++...-....+..|++++.-.+.+
T Consensus       124 ~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~  200 (265)
T cd06631         124 VHRDIKGNNVMLMP--NGIIKLIDFGCARRLAWVGLHGTHSNML-KSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFE  200 (265)
T ss_pred             ccCCcCHHhEEECC--CCeEEeccchhhHhhhhccccccccccc-cccCCCccccChhhhcCCCCcchhhHHHHHHHHHH
Confidence            99999999999985  889999999998765321100 000000 11124455677777665556677899988766554


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       201 l~  202 (265)
T cd06631         201 MA  202 (265)
T ss_pred             HH
Confidence            43

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.39  E-value=2.8e-12  Score=135.20  Aligned_cols=188  Identities=18%  Similarity=0.174  Sum_probs=119.3

Q ss_pred             ccccccceeEEEEEEe------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      ..||.|++|.||.|..      ++..||+|..++......                                        
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~----------------------------------------   49 (284)
T cd05079          10 RDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNH----------------------------------------   49 (284)
T ss_pred             eecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHH----------------------------------------
Confidence            4699999999999984      478999998765432110                                        


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQ  449 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~q  449 (765)
                       .-++.+|...+..+    .+..-+.+...+.+. ....++||||++|++|.++........+...+...+  +...+..
T Consensus        50 -~~~~~~e~~~l~~l----~h~~i~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~  124 (284)
T cd05079          50 -IADLKKEIEILRNL----YHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDY  124 (284)
T ss_pred             -HHHHHHHHHHHHhC----CCCCeeeeeeEEecCCCCceEEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence             01234444444443    222222333333222 134689999999999998754322223444333322  2334788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..|++|+|+||.||+++.  ++.++|.|||++..+.......  . ......+...+++++....+..++..|++++.
T Consensus       125 lH~~gi~H~dlkp~Nil~~~--~~~~~l~dfg~~~~~~~~~~~~--~-~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG  199 (284)
T cd05079         125 LGSRQYVHRDLAARNVLVES--EHQVKIGDFGLTKAIETDKEYY--T-VKDDLDSPVFWYAPECLIQSKFYIASDVWSFG  199 (284)
T ss_pred             HHHCCeeecccchheEEEcC--CCCEEECCCccccccccCccce--e-ecCCCCCCccccCHHHhccCCCCccccchhhh
Confidence            99999999999999999986  8899999999998775432110  0 00112234456677776666677788999998


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      -.+.+++
T Consensus       200 ~il~ell  206 (284)
T cd05079         200 VTLYELL  206 (284)
T ss_pred             hhhhhhh
Confidence            7766654

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.39  E-value=3.8e-12  Score=132.23  Aligned_cols=196  Identities=16%  Similarity=0.108  Sum_probs=118.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ..||.|++|+||+|..  +++.||+|+........-                           ...-..++.+      +
T Consensus         6 ~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~---------------------------~~~~~~~~~~------~   52 (267)
T cd06628           6 ALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSAS---------------------------SKDRKRSMLD------A   52 (267)
T ss_pred             ceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccc---------------------------hhHHHHHHHH------H
Confidence            5799999999999998  589999998744321110                           0000111112      3


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      +.+|+..+.++.     ++++ .+.. +.......+++|||++|.+|.++.... ...+...+...+  +...+..+|..
T Consensus        53 ~~~e~~~l~~l~-----h~~i~~~~~-~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~l~~~l~~lH~~  125 (267)
T cd06628          53 LAREIALLKELQ-----HENIVQYLG-SSLDADHLNIFLEYVPGGSVAALLNNY-GAFEETLVRNFVRQILKGLNYLHNR  125 (267)
T ss_pred             HHHHHHHHHhcC-----CCCeeeEEE-EEEeCCccEEEEEecCCCCHHHHHHhc-cCccHHHHHHHHHHHHHHHHHHHhc
Confidence            334444444432     2322 2222 223345679999999999998865322 122332222222  22346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|.||++++  ++.++|+|||++..+.......-.........+...+++++....+..++..|++++...+.
T Consensus       126 ~ivH~di~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~  203 (267)
T cd06628         126 GIIHRDIKGANILVDN--KGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVV  203 (267)
T ss_pred             CcccccCCHHHEEEcC--CCCEEecccCCCcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHH
Confidence            9999999999999985  88999999999887753211000000000112344566777776666677789999887666


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       204 ~l~  206 (267)
T cd06628         204 EML  206 (267)
T ss_pred             HHh
Confidence            554

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.39  E-value=3.4e-12  Score=132.33  Aligned_cols=183  Identities=16%  Similarity=0.145  Sum_probs=120.1

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||.|++|.||+|.. ++..||+|...+.-..                                           .-++
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~~-------------------------------------------~~~~   48 (261)
T cd05072          12 KKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMS-------------------------------------------VQAF   48 (261)
T ss_pred             eecCCcCCceEEEEEecCCceEEEEEccCCchh-------------------------------------------HHHH
Confidence            6799999999999998 6788999977442110                                           0023


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      .+|...+.++.     ++++.-...+.......+++|||++|++|.++.... ........+...+  +...+..+|..|
T Consensus        49 ~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~  123 (261)
T cd05072          49 LEEANLMKTLQ-----HDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKN  123 (261)
T ss_pred             HHHHHHHHhCC-----CCCeeeEEEEEcCCCCcEEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            44444444432     233322222233345579999999999998865432 1223333333322  233468889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|++|.||++++  ++.+++.|||.+..+........     ........+++++....+..++..|++++...+.+
T Consensus       124 i~H~dl~p~nili~~--~~~~~l~dfg~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~  196 (261)
T cd05072         124 YIHRDLRAANVLVSE--SLMCKIADFGLARVIEDNEYTAR-----EGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYE  196 (261)
T ss_pred             eeccccchhhEEecC--CCcEEECCCccceecCCCceecc-----CCCccceecCCHHHhccCCCChhhhhhhhHHHHHH
Confidence            999999999999986  88999999999987754321100     00112345777887777777778899999877665


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       197 l~  198 (261)
T cd05072         197 IV  198 (261)
T ss_pred             HH
Confidence            54

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.39  E-value=7.9e-12  Score=129.39  Aligned_cols=181  Identities=17%  Similarity=0.150  Sum_probs=117.4

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|++|.||+|.+ +++.||||+..++....                                           -++
T Consensus        12 ~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~~~-------------------------------------------~~~   48 (261)
T cd05034          12 RKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSP-------------------------------------------EAF   48 (261)
T ss_pred             eeeccCcceEEEEEEEcCCceEEEEEecCCccCH-------------------------------------------HHH
Confidence            6899999999999998 57889999875432110                                           123


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHh
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILS  452 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~l--i~~~L~qi~~  452 (765)
                      ..|...+.++.     +++  +++.+.  +.....+++|||++|++|.+...... ...+...+...+  +-..+..+|.
T Consensus        49 ~~e~~~l~~l~-----h~~--i~~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~  121 (261)
T cd05034          49 LQEAQIMKKLR-----HDK--LVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLES  121 (261)
T ss_pred             HHHHHHHhhCC-----CCC--EeeeeeeeecCCceEEEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            34444444432     222  333332  23356799999999999988653221 223443333322  2234678899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      .|++|+|++|.||++++  ++.++++|||.+..+........     .-......++.++...-+..++..|++++...+
T Consensus       122 ~~i~h~di~p~nili~~--~~~~~l~d~g~~~~~~~~~~~~~-----~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il  194 (261)
T cd05034         122 RNYIHRDLAARNILVGE--NLVCKIADFGLARLIEDDEYTAR-----EGAKFPIKWTAPEAANYGRFTIKSDVWSFGILL  194 (261)
T ss_pred             CCcccCCcchheEEEcC--CCCEEECccccceeccchhhhhh-----hccCCCccccCHHHhccCCcCchhHHHHHHHHH
Confidence            99999999999999986  89999999999987764211110     001123356677777666677788999988766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       195 ~~l~  198 (261)
T cd05034         195 TEIV  198 (261)
T ss_pred             HHHH
Confidence            5544

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.39  E-value=2.4e-12  Score=135.44  Aligned_cols=186  Identities=18%  Similarity=0.163  Sum_probs=114.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+......                       .    .             ..+
T Consensus         6 ~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~-----------------------~----~-------------~~~   45 (288)
T cd07863           6 AEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNED-----------------------G----L-------------PLS   45 (288)
T ss_pred             eEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCC-----------------------C----C-------------chH
Confidence            5699999999999998  58999999875432111                       0    0             001


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeec----cCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHH--HHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWE----YTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAV--ESYLE  448 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e----~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~ia~~li--~~~L~  448 (765)
                      +.+|..-+.++.. +. ++++ .+-.++..    .....+++|||++| .+.++... ...+++...+...+.  -..+.
T Consensus        46 ~~~e~~~l~~l~~-~~-h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~  122 (288)
T cd07863          46 TVREVALLKRLEA-FD-HPNIVRLMDVCATSRTDRETKVTLVFEHVDQ-DLRTYLDKVPPPGLPAETIKDLMRQFLRGLD  122 (288)
T ss_pred             HHHHHHHHHHhhh-cC-CCCeeeeeeeeccccCCCCceEEEEEccccc-CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence            1222222223221 11 2222 12222211    12346899999997 55554322 222344444443332  23478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      .+|..|++|+|+||+||+++.  ++.++|+|||++..++.....       ....++..+++++....+......|++++
T Consensus       123 ~lH~~~ivH~dikp~Nili~~--~~~~kl~dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Diwsl  193 (288)
T cd07863         123 FLHANCIVHRDLKPENILVTS--GGQVKLADFGLARIYSCQMAL-------TPVVVTLWYRAPEVLLQSTYATPVDMWSV  193 (288)
T ss_pred             HHHhCCeecCCCCHHHEEECC--CCCEEECccCccccccCcccC-------CCccccccccCchHhhCCCCCCcchhhhH
Confidence            889999999999999999986  889999999998876543210       01123455777887776667788999999


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      ...+.+++
T Consensus       194 G~~l~~l~  201 (288)
T cd07863         194 GCIFAEMF  201 (288)
T ss_pred             HHHHHHHH
Confidence            87766554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.39  E-value=2.5e-12  Score=137.35  Aligned_cols=189  Identities=17%  Similarity=0.115  Sum_probs=114.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.++.|++|.||+|+.  +++.|+||...++....                                 ....      -+
T Consensus         7 ~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~---------------------------------~~~~------~~   47 (305)
T cd05609           7 KLISNGAYGAVYLVRHKETRQRFAMKKINKQNLIL---------------------------------RNQI------QQ   47 (305)
T ss_pred             eEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhh---------------------------------HHHH------HH
Confidence            6799999999999999  58999999764321000                                 0000      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCC--eEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTP--QILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~--~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~  452 (765)
                      +.+|.+.+..+     +++  .+++++..+++.  .++||||++|++|.++.... .......+...+  +-..+.++|.
T Consensus        48 ~~~e~~~l~~~-----~~~--~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH~  119 (305)
T cd05609          48 VFVERDILTFA-----ENP--FVVSMFCSFETKRHLCMVMEYVEGGDCATLLKNI-GALPVDMARMYFAETVLALEYLHN  119 (305)
T ss_pred             HHHHHHHHHhC-----CCC--CeeeeEEEEecCCEEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            33444433332     123  445666544444  49999999999998875322 122222222221  2245788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHH---------HHHHHHhhcCHHHHHHHHHHcCCCCCCC
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLL---------EAFYGIYEKDADKVLQAMVQMGVLVPTG  523 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~---------~l~~ai~~~D~~~i~~~l~~lG~~~~~~  523 (765)
                      .|++|+|+||+||+++.  ++.++++|||++..........+.         ........+...+++++...-+...+..
T Consensus       120 ~~i~H~dl~p~NIll~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  197 (305)
T cd05609         120 YGIVHRDLKPDNLLITS--MGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPV  197 (305)
T ss_pred             CCccccCCchHHEEECC--CCCEEEeeCCCccccCcCccccccccccccchhhccccCCccCccccCchhccCCCCCchh
Confidence            99999999999999985  889999999987632111000000         0000001234456666665555667778


Q ss_pred             CHHHHHHHHHHHH
Q 004254          524 DTTAVRRTAQFFL  536 (765)
Q Consensus       524 D~~~l~~~~~~~l  536 (765)
                      |++++...+.+++
T Consensus       198 Di~slG~vl~el~  210 (305)
T cd05609         198 DWWAMGIILYEFL  210 (305)
T ss_pred             hHHHHHHHHHHHH
Confidence            9998876655543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.39  E-value=3.6e-12  Score=132.68  Aligned_cols=189  Identities=17%  Similarity=0.161  Sum_probs=114.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++||+|++|+||+|+.  +|++|++|+..+.....                                 .      ..+-.
T Consensus         7 ~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~---------------------------------~------~~~~~   47 (280)
T cd05581           7 KIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIK---------------------------------E------KKVKY   47 (280)
T ss_pred             eeecCCCceEEEEEEEcCCCCEEEEEEechHhccc---------------------------------h------HHHHH
Confidence            6899999999999999  69999999874311000                                 0      00112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~  452 (765)
                      +..|...+.++.    ++++  +++++.  ...+..+++|||++|++|.+..... ..++...+....  +-..+..+|.
T Consensus        48 ~~~e~~~~~~l~----~~~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~i~~ql~~~l~~Lh~  120 (280)
T cd05581          48 VKIEKEVLTRLN----GHPG--IIKLYYTFQDEENLYFVLEYAPNGELLQYIRKY-GSLDEKCTRFYAAEILLALEYLHS  120 (280)
T ss_pred             HHHHHHHHHhcc----cCCC--chhHHHHhcCCceEEEEEcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            223333332221    1121  222221  2235679999999999998865322 134444333332  2234677899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHH--------------HHHHHhhcCHHHHHHHHHHcCC
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE--------------AFYGIYEKDADKVLQAMVQMGV  518 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~--------------l~~ai~~~D~~~i~~~l~~lG~  518 (765)
                      .|++|+|++|+||+++.  ++.++++|||++..+.......-..              .......+...++.++....+.
T Consensus       121 ~~~~H~dl~~~ni~i~~--~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~  198 (280)
T cd05581         121 KGIIHRDLKPENILLDK--DMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKP  198 (280)
T ss_pred             CCeeecCCCHHHeEECC--CCCEEecCCccccccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCC
Confidence            99999999999999985  8899999999998776543210000              0001112344556666666566


Q ss_pred             CCCCCCHHHHHHHHHHH
Q 004254          519 LVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       519 ~~~~~D~~~l~~~~~~~  535 (765)
                      .+...|++++...+..+
T Consensus       199 ~~~~~Di~slG~~l~~l  215 (280)
T cd05581         199 AGKSSDLWALGCIIYQM  215 (280)
T ss_pred             CChhhhHHHHHHHHHHH
Confidence            66677888877554443

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.38  E-value=3.3e-12  Score=131.62  Aligned_cols=117  Identities=16%  Similarity=0.084  Sum_probs=81.7

Q ss_pred             CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCC-------cEEEE
Q 004254          408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGG-------RLIFY  478 (765)
Q Consensus       408 t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g-------~l~Li  478 (765)
                      ...+++|||++|++|.++........+...+...+  +-..+..+|..|++|+|++|+||+++.  ++       .++++
T Consensus        73 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~--~~~~~~~~~~~kl~  150 (259)
T cd05037          73 DENIMVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVAR--YGLNEGYVPFIKLS  150 (259)
T ss_pred             CCcEEEEEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEec--CccccCCceeEEeC
Confidence            56799999999999998764433344444443322  233468889999999999999999985  44       69999


Q ss_pred             eecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHH
Q 004254          479 DFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG--VLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       479 DFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG--~~~~~~D~~~l~~~~~~~l  536 (765)
                      |||++..+.....          ......+++++....+  ..+...|++++...+.+++
T Consensus       151 Dfg~a~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~  200 (259)
T cd05037         151 DPGIPITVLSREE----------RVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEIC  200 (259)
T ss_pred             CCCcccccccccc----------cccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHH
Confidence            9999887654111          1223456677776654  5566789998876655543

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.38  E-value=2.7e-12  Score=137.95  Aligned_cols=185  Identities=18%  Similarity=0.271  Sum_probs=113.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.+|.|++|.||+|+.  +|+.||+|.++-.-++.                . .|                 .+..+|+.
T Consensus        17 eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~E----------------G-~P-----------------~taiREis   62 (323)
T KOG0594|consen   17 EKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEE----------------G-VP-----------------STAIREIS   62 (323)
T ss_pred             HHhCCCCceEEEEEEEecCCCEEEEEEEecccccc----------------C-CC-----------------chhhHHHH
Confidence            3499999999999999  69999999885433210                0 11                 12234444


Q ss_pred             HHHHHHHHHHHHHhcCCCC-ccccceeeeccC-----CCeEEEEeecCCCChhhhhhhhh---cCCCHHHHHHHHHH---
Q 004254          377 YTQEAANAELFASNFKDMD-YVKVPTIFWEYT-----TPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYAVE---  444 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~-~V~vP~vy~e~s-----t~~vLVMEyieG~~L~d~~~l~~---~g~d~~~ia~~li~---  444 (765)
                      +.++.+          +.. -|.+-.++...+     +..+||+||++- .|.+......   .|.+.. +....+.   
T Consensus        63 llk~L~----------~~~~iv~L~dv~~~~~~~~~~~~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~-~ik~~m~Qll  130 (323)
T KOG0594|consen   63 LLKRLS----------HANHIVRLHDVIHTSNNHRGIGKLYLVFEFLDR-DLKKYMDSLPKKPQGLPPR-LIKSFMRQLL  130 (323)
T ss_pred             HHHHhC----------CCcceEEEEeeeeecccccccceEEEEEEeecc-cHHHHHHhccccccCCCHH-HHHHHHHHHH
Confidence            443332          212 233334443333     256899999975 3444332222   355552 2222222   


Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004254          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (765)
Q Consensus       445 ~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D  524 (765)
                      ..+..+|++|++|||+||.||+|++  +|.++|+|||+++.++-..+. |..-+..+..+-++-    ++.--.+++..|
T Consensus       131 ~gl~~~H~~~IlHRDLKPQNlLi~~--~G~lKlaDFGlAra~~ip~~~-yt~evvTlWYRaPEv----LlGs~~Ys~~vD  203 (323)
T KOG0594|consen  131 RGLAFLHSHGILHRDLKPQNLLISS--SGVLKLADFGLARAFSIPMRT-YTPEVVTLWYRAPEV----LLGSTSYSTSVD  203 (323)
T ss_pred             HHHHHHHhCCeecccCCcceEEECC--CCcEeeeccchHHHhcCCccc-ccccEEEeeccCHHH----hcCCCcCCCCcc
Confidence            2366789999999999999999996  899999999999977644432 222222223333333    333335677889


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++.-.+.+++
T Consensus       204 iWs~GcIfaEm~  215 (323)
T KOG0594|consen  204 IWSLGCIFAEMF  215 (323)
T ss_pred             hHhHHHHHHHHH
Confidence            999987665554

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.38  E-value=3.3e-12  Score=143.33  Aligned_cols=86  Identities=14%  Similarity=0.064  Sum_probs=61.5

Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004254          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (765)
Q Consensus       445 ~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D  524 (765)
                      ..+..+|..|++|+|++|.||++++  ++.++++|||++..+........    .........+++++....+...+..|
T Consensus       248 ~aL~~LH~~~ivH~dikp~Nill~~--~~~~kL~DfGla~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~D  321 (400)
T cd05105         248 RGMEFLASKNCVHRDLAARNVLLAQ--GKIVKICDFGLARDIMHDSNYVS----KGSTFLPVKWMAPESIFDNLYTTLSD  321 (400)
T ss_pred             HHHHHHHhCCeeCCCCChHhEEEeC--CCEEEEEeCCcceeccccccccc----cCCcCCCcceEChhhhcCCCCCchhh
Confidence            3467889999999999999999986  78899999999887643221100    00011224467787777677778889


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++...+.+++
T Consensus       322 iwSlGvil~ell  333 (400)
T cd05105         322 VWSYGILLWEIF  333 (400)
T ss_pred             HHHHHHHHHHHH
Confidence            999987665554

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.38  E-value=4.6e-12  Score=133.64  Aligned_cols=183  Identities=16%  Similarity=0.148  Sum_probs=113.6

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .||.|++|.||+|..  +|+.||||+..+.....-.                                       .+..+
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~---------------------------------------~~~~~   41 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQ---------------------------------------GETLA   41 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccch---------------------------------------hHHHH
Confidence            479999999999998  5899999987542111000                                       01112


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeec--cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e--~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~  453 (765)
                      ..|...+..+.. . +++.+  +..+..  .....++||||++|+.|.+.... ...+....+...+.+  ..+..+|..
T Consensus        42 ~~~~~~~~~~~~-~-~~~~i--~~~~~~~~~~~~~~~v~e~~~g~~L~~~l~~-~~~l~~~~~~~~~~ql~~~l~~lH~~  116 (278)
T cd05606          42 LNERIMLSLVST-G-DCPFI--VCMSYAFHTPDKLSFILDLMNGGDLHYHLSQ-HGVFSEAEMRFYAAEIILGLEHMHNR  116 (278)
T ss_pred             HHHHHHHHHHHh-C-CCCcE--eeeeeeeecCCEEEEEEecCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            222222222221 1 22322  222222  23456899999999999876432 122333333332222  236788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~~~  532 (765)
                      |++|+|++|.||+++.  ++.++++|||++..+.......        ..+...+++++....+ ..+...|++++...+
T Consensus       117 ~i~H~di~p~nili~~--~~~~kl~dfg~~~~~~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l  186 (278)
T cd05606         117 FVVYRDLKPANILLDE--HGHVRISDLGLACDFSKKKPHA--------SVGTHGYMAPEVLQKGVAYDSSADWFSLGCML  186 (278)
T ss_pred             CEEcCCCCHHHEEECC--CCCEEEccCcCccccCccCCcC--------cCCCcCCcCcHHhcCCCCCCcccchHhHHHHH
Confidence            9999999999999985  7899999999987665432211        1345566777777644 356678999988766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       187 ~~l~  190 (278)
T cd05606         187 FKLL  190 (278)
T ss_pred             HHHH
Confidence            5554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.38  E-value=5.3e-12  Score=130.88  Aligned_cols=183  Identities=15%  Similarity=0.116  Sum_probs=116.3

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||.|++|.||+|.. .+..+|||+.+++...                                           +-+|
T Consensus        10 ~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~~-------------------------------------------~~~~   46 (256)
T cd05059          10 KELGSGQFGVVHLGKWRGKIDVAIKMIREGAMS-------------------------------------------EDDF   46 (256)
T ss_pred             hhhccCCCceEEEeEecCCccEEEEEeccCCCC-------------------------------------------HHHH
Confidence            5799999999999998 5678999987443210                                           0123


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~Gf  455 (765)
                      ..|...+..+.     ++++.-..-+.......+++|||++|++|.+.........+...+.....  -..+..+|..|+
T Consensus        47 ~~e~~~l~~l~-----~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  121 (256)
T cd05059          47 IEEAKVMMKLS-----HPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGF  121 (256)
T ss_pred             HHHHHHHHhCC-----CCCEEEEEEEEcCCCceEEEEecCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            33444333331     23322222222344567999999999999886543222334443333222  234678899999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|++|.||++++  ++.++++|||++..........     .........++++++...+..+...|++++.-.+.++
T Consensus       122 ~H~dl~p~ni~i~~--~~~~kl~dfg~~~~~~~~~~~~-----~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l  194 (256)
T cd05059         122 IHRDLAARNCLVGE--DNVVKVSDFGLARYVLDDQYTS-----SQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEV  194 (256)
T ss_pred             ccccccHhhEEECC--CCcEEECCcccceecccccccc-----cCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHH
Confidence            99999999999986  8899999999987664321100     0000112346778877777777788999988665544


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       195 ~  195 (256)
T cd05059         195 F  195 (256)
T ss_pred             h
Confidence            3

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.38  E-value=6e-12  Score=129.87  Aligned_cols=181  Identities=14%  Similarity=0.143  Sum_probs=122.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.|+||+.++.....                                         ..-+
T Consensus         7 ~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~-----------------------------------------~~~~   45 (264)
T cd06623           7 KVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEE-----------------------------------------FRKQ   45 (264)
T ss_pred             eeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchH-----------------------------------------HHHH
Confidence            6899999999999999  49999999875532210                                         0113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceee--eccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy--~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~  452 (765)
                      +.+|.+.+.++.     +++  +++.+  .......+++|||++|++|.++.... ..++...+...+.  -..+..+|.
T Consensus        46 ~~~e~~~l~~l~-----~~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~l~~~l~~lh~  117 (264)
T cd06623          46 LLRELKTLRSCE-----SPY--VVKCYGAFYKEGEISIVLEYMDGGSLADLLKKV-GKIPEPVLAYIARQILKGLDYLHT  117 (264)
T ss_pred             HHHHHHHHHhcC-----CCC--eeeEEEEEccCCeEEEEEEecCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHhc
Confidence            444555444443     222  22232  23346679999999999999875422 3344444333322  233678899


Q ss_pred             -CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          453 -HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       453 -~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                       .|++|+|++|+||++++  ++.++|+|||+...+.......      ........++.++....+..+...|++++...
T Consensus       118 ~~~~~H~~l~~~ni~~~~--~~~~~l~df~~~~~~~~~~~~~------~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~i  189 (264)
T cd06623         118 KRHIIHRDIKPSNLLINS--KGEVKIADFGISKVLENTLDQC------NTFVGTVTYMSPERIQGESYSYAADIWSLGLT  189 (264)
T ss_pred             cCCCccCCCCHHHEEECC--CCCEEEccCccceecccCCCcc------cceeecccccCHhhhCCCCCCchhhHHHHHHH
Confidence             99999999999999986  8899999999998775433221      11123455677777777777778899999877


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       190 l~~l~  194 (264)
T cd06623         190 LLECA  194 (264)
T ss_pred             HHHHH
Confidence            66654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.37  E-value=7.3e-12  Score=129.13  Aligned_cols=186  Identities=12%  Similarity=0.055  Sum_probs=117.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +++|.|++|.||.|..  +|++||||........                                  .+..+      .
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~----------------------------------~~~~~------~   45 (257)
T cd08223           6 RVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNAS----------------------------------RRERK------A   45 (257)
T ss_pred             EEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcC----------------------------------HHHHH------H
Confidence            5799999999999998  5899999976221100                                  00001      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH--HHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li~--~~L~qi~~~  453 (765)
                      +.+|...+.++.    +...+.+...+.......+++|||++|+++.+...... ...+...+...+.+  ..+..+|..
T Consensus        46 ~~~e~~~l~~l~----~~~i~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~  121 (257)
T cd08223          46 AEQEAQLLSQLK----HPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEK  121 (257)
T ss_pred             HHHHHHHHHhCC----CCCeeeeeeeecCCCCEEEEEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            233443333332    22222222223222334689999999999987653221 22344433333322  346889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|.||+++.  ++.++|+|||++..+......      .....+.+.++++++...+..++..|++++...+.
T Consensus       122 ~i~H~di~p~nil~~~--~~~~~l~df~~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~  193 (257)
T cd08223         122 HILHRDLKTQNVFLTR--TNIIKVGDLGIARVLENQCDM------ASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVY  193 (257)
T ss_pred             CeeccCCCchhEEEec--CCcEEEecccceEEecccCCc------cccccCCcCccChhHhcCCCCCchhhhHHHHHHHH
Confidence            9999999999999986  889999999998876432210      01123455678888887777777889999886665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       194 ~l~  196 (257)
T cd08223         194 EMA  196 (257)
T ss_pred             HHH
Confidence            543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.37  E-value=4e-12  Score=135.53  Aligned_cols=181  Identities=18%  Similarity=0.149  Sum_probs=119.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.+|.|++|.||+|+.  +|+.|++|.........                                          .-.
T Consensus        26 ~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~------------------------------------------~~~   63 (296)
T cd06654          26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK------------------------------------------KEL   63 (296)
T ss_pred             EEecCCCCeEEEEEEECCCCcEEEEEEEecCCcch------------------------------------------HHH
Confidence            5799999999999997  68999999763211100                                          012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|...+..+     +++++.-..-+.......++||||++|++|.++..  ....+...+...+  +-..+..+|..|
T Consensus        64 ~~~e~~~l~~~-----~h~~v~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~i~~ql~~aL~~LH~~g  136 (296)
T cd06654          64 IINEILVMREN-----KNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT--ETCMDEGQIAAVCRECLQALEFLHSNQ  136 (296)
T ss_pred             HHHHHHHHHhC-----CCCCEeeEEEEEEeCCEEEEeecccCCCCHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33444433332     22333222212223456799999999999998653  2223444443332  223467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|++|.||+++.  ++.++++|||++..+.+.....      ....+...++++++...+...+..|++++...+.+
T Consensus       137 i~H~dLkp~Nill~~--~~~~kl~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~  208 (296)
T cd06654         137 VIHRDIKSDNILLGM--DGSVKLTDFGFCAQITPEQSKR------STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIE  208 (296)
T ss_pred             cccCCCCHHHEEEcC--CCCEEECccccchhcccccccc------CcccCCccccCHHHHcCCCCCccchHHHHHHHHHH
Confidence            999999999999986  7899999999988765443211      11134566778888777777788999999877665


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       209 l~  210 (296)
T cd06654         209 MI  210 (296)
T ss_pred             HH
Confidence            54

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.37  E-value=7.5e-12  Score=130.18  Aligned_cols=181  Identities=20%  Similarity=0.178  Sum_probs=113.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||+|+.+....+..                                          -.
T Consensus        15 ~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~------------------------------------------~~   52 (267)
T cd06646          15 QRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDF------------------------------------------SL   52 (267)
T ss_pred             heeecCCCeEEEEEEECCCCeEEEEEEEecCccchH------------------------------------------HH
Confidence            6799999999999998  689999998854321110                                          01


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      +.+|+..+..+     +++++ .+...+ ......++||||++|++|.++... ....+...+....  +-..+..+|..
T Consensus        53 ~~~e~~~l~~~-----~h~~ii~~~~~~-~~~~~~~iv~e~~~~~~L~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~  125 (267)
T cd06646          53 IQQEIFMVKEC-----KHCNIVAYFGSY-LSREKLWICMEYCGGGSLQDIYHV-TGPLSELQIAYVCRETLQGLAYLHSK  125 (267)
T ss_pred             HHHHHHHHHhc-----CCCCeeeeeEEE-EeCCEEEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            23344433333     12222 222222 234567999999999999886532 1223333332222  22346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCCHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRR  530 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~---lG~~~~~~D~~~l~~  530 (765)
                      |++|+|++|+||++++  ++.++++|||++..+.......      ....+...+++++...   .+..+...|++++..
T Consensus       126 ~i~H~dl~p~nill~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~  197 (267)
T cd06646         126 GKMHRDIKGANILLTD--NGDVKLADFGVAAKITATIAKR------KSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGI  197 (267)
T ss_pred             CccccCCCHHHEEECC--CCCEEECcCccceeeccccccc------CccccCccccCHhHcccccCCCCcchhhHHHHHH
Confidence            9999999999999985  7889999999998765322100      0012344566677653   233455679998876


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       198 il~el~  203 (267)
T cd06646         198 TAIELA  203 (267)
T ss_pred             HHHHHH
Confidence            665543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.37  E-value=4.2e-12  Score=134.41  Aligned_cols=182  Identities=16%  Similarity=0.188  Sum_probs=113.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|..  +|+.|++|+......+.                                          .-+
T Consensus        18 ~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~------------------------------------------~~~   55 (292)
T cd06644          18 GELGDGAFGKVYKAKNKETGALAAAKVIETKSEEE------------------------------------------LED   55 (292)
T ss_pred             heecCCCCeEEEEEEECCCCceEEEEEeccCCHHH------------------------------------------HHH
Confidence            4699999999999998  58999999874322111                                          112


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      +..|...+..+.     ++++ .+...+ ...+..++||||++|+.+..+.......++...+...+.  -..+..+|..
T Consensus        56 ~~~e~~~l~~l~-----h~~i~~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~  129 (292)
T cd06644          56 YMVEIEILATCN-----HPYIVKLLGAF-YWDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSM  129 (292)
T ss_pred             HHHHHHHHHhCC-----CCcEeeeEEEE-EeCCeEEEEEecCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            344554444432     2222 222222 335678999999999998775432223344444333322  2346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCCHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGDTTAV  528 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-----G~~~~~~D~~~l  528 (765)
                      |++|+|+||.||+++.  ++.++|+|||++..........      ....++..++++++...     ...+...|++++
T Consensus       130 ~i~H~dlkp~Nili~~--~~~~kl~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~sl  201 (292)
T cd06644         130 KIIHRDLKAGNVLLTL--DGDIKLADFGVSAKNVKTLQRR------DSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSL  201 (292)
T ss_pred             CeeecCCCcceEEEcC--CCCEEEccCccceecccccccc------ceecCCccccCceeeccccccCCCCCchhhhHhH
Confidence            9999999999999985  8899999999877543321110      01123445666665532     223445799988


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      ...+.+++
T Consensus       202 G~il~el~  209 (292)
T cd06644         202 GITLIEMA  209 (292)
T ss_pred             HHHHHHHh
Confidence            87665544

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.37  E-value=8.7e-12  Score=130.81  Aligned_cols=181  Identities=15%  Similarity=0.166  Sum_probs=115.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|..  +++.||+|+.+......                                          .-+
T Consensus        11 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~------------------------------------------~~~   48 (280)
T cd06611          11 GELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEE------------------------------------------LED   48 (280)
T ss_pred             HHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHH------------------------------------------HHH
Confidence            4699999999999998  58999999884432111                                          013


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~  453 (765)
                      |..|+..+.++.     ++++ .+...+ ......++||||++|+.|.++.......++...+...+.+  ..+..+|..
T Consensus        49 ~~~e~~~l~~l~-----h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~  122 (280)
T cd06611          49 FMVEIDILSECK-----HPNIVGLYEAY-FYENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSH  122 (280)
T ss_pred             HHHHHHHHHhCC-----CCceeEEEEEE-ecCCeEEEEeeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            444554444432     2322 222222 2345679999999999998875432233444443333222  346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCCHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGDTTAV  528 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-----G~~~~~~D~~~l  528 (765)
                      |++|+|++|.||+++.  ++.++++|||+...........      ....+...++.++....     ...+...|++++
T Consensus       123 ~i~h~dl~p~nili~~--~~~~~l~d~g~~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~sl  194 (280)
T cd06611         123 KVIHRDLKAGNILLTL--DGDVKLADFGVSAKNKSTLQKR------DTFIGTPYWMAPEVVACETFKDNPYDYKADIWSL  194 (280)
T ss_pred             CcccCCCChhhEEECC--CCCEEEccCccchhhccccccc------ceeecchhhcCHHHHhhcccCCCCCCccccHHHH
Confidence            9999999999999986  8899999999887654332111      01124555677777642     223446799998


Q ss_pred             HHHHHHH
Q 004254          529 RRTAQFF  535 (765)
Q Consensus       529 ~~~~~~~  535 (765)
                      .-.+.++
T Consensus       195 G~il~~l  201 (280)
T cd06611         195 GITLIEL  201 (280)
T ss_pred             HHHHHHH
Confidence            7665544

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.37  E-value=3.4e-12  Score=135.43  Aligned_cols=184  Identities=20%  Similarity=0.193  Sum_probs=117.1

Q ss_pred             ccccccceeEEEEEEeC--------------C--eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHH
Q 004254          299 EPIAAASLGQVHRARLK--------------G--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~--------------G--~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~  362 (765)
                      +.||.|++|.||+|+..              |  ..||||+.+++.....                              
T Consensus        11 ~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~------------------------------   60 (295)
T cd05097          11 EKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTA------------------------------   60 (295)
T ss_pred             hccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHH------------------------------
Confidence            57999999999999862              1  2589998876532210                              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhc---------
Q 004254          363 IYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDEL---------  431 (765)
Q Consensus       363 i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~---------  431 (765)
                                 .-+|.+|.+.+.++.     +++  +++++.  ......+++|||++|++|.++......         
T Consensus        61 -----------~~~~~~ei~~l~~l~-----h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~  122 (295)
T cd05097          61 -----------RNDFLKEIKIMSRLK-----NPN--IIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANN  122 (295)
T ss_pred             -----------HHHHHHHHHHHHhCC-----CCC--cCeEEEEEcCCCccEEEEecCCCCcHHHHHHhcccccccccccc
Confidence                       113445555555442     222  333332  334567999999999999886532210         


Q ss_pred             --CCCHHHHHHHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHH
Q 004254          432 --GVDRKRLGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDAD  507 (765)
Q Consensus       432 --g~d~~~ia~~li--~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~  507 (765)
                        ..+...+...+.  ...+..+|..|++|+|+||+||++++  ++.++++|||++..+.......    ..+.......
T Consensus       123 ~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nill~~--~~~~kl~dfg~~~~~~~~~~~~----~~~~~~~~~~  196 (295)
T cd05097         123 IPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGN--HYTIKIADFGMSRNLYSGDYYR----IQGRAVLPIR  196 (295)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChhhEEEcC--CCcEEecccccccccccCccee----ccCcCcCcee
Confidence              122233322222  23367889999999999999999985  7899999999987654321100    0011112345


Q ss_pred             HHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          508 KVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       508 ~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +++++....+..+...|++++...+.+++
T Consensus       197 y~aPE~~~~~~~~~~~DvwSlG~~l~el~  225 (295)
T cd05097         197 WMAWESILLGKFTTASDVWAFGVTLWEMF  225 (295)
T ss_pred             ecChhhhccCCcCchhhHHHHHHHHHHHH
Confidence            66777776677788899999987766554

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.37  E-value=1.9e-12  Score=140.14  Aligned_cols=121  Identities=17%  Similarity=0.212  Sum_probs=83.4

Q ss_pred             CeEEEEeecCCCChhhhhhhhhcCCCHHHHH--HHHHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceecc
Q 004254          409 PQILTMEYVPGIKINRIQSLDELGVDRKRLG--RYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  486 (765)
Q Consensus       409 ~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia--~~li~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L  486 (765)
                      ...+.|||++|++|.+........+....+.  .+.+-.-+.++|.+||+|||+||.|||++. .++.++|.|||+++.+
T Consensus        90 ~~~i~mEy~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~-~~~~~KlaDFG~a~~~  168 (313)
T KOG0198|consen   90 EYNIFMEYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDP-SNGDVKLADFGLAKKL  168 (313)
T ss_pred             eeEeeeeccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeC-CCCeEEeccCcccccc
Confidence            4789999999999999764332223333222  222334478899999999999999999984 2589999999999988


Q ss_pred             ChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHHHHHHHHH
Q 004254          487 SPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTAQ  533 (765)
Q Consensus       487 ~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~-~~~~D~~~l~~~~~  533 (765)
                      ......   .....-..+.+.+|+++...-|.. .+..|+.++.-.+-
T Consensus       169 ~~~~~~---~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVv  213 (313)
T KOG0198|consen  169 ESKGTK---SDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVV  213 (313)
T ss_pred             cccccc---ccccccccCCccccCchhhcCCCcCCccchhhhcCCEEE
Confidence            740000   000112356788999999986543 34789988876543

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.37  E-value=5.1e-12  Score=146.92  Aligned_cols=143  Identities=20%  Similarity=0.218  Sum_probs=103.5

Q ss_pred             CcccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          297 DVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       297 d~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ..+.||.|++|.||+|.+.++.+++|+..+.....-                                 ++...+ ..-.
T Consensus       337 ~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~---------------------------------~~~~~~-~~~~  382 (535)
T PRK09605        337 PDHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHP---------------------------------ELDERL-RTER  382 (535)
T ss_pred             ccceeccCCcEEEEEEeecCccceeEEEecccccch---------------------------------hHHHHH-HHHH
Confidence            457899999999999999887888887643221110                                 000001 1124


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCcc
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFF  456 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~Gff  456 (765)
                      +.+|++.+..++     .+++.+|.++.......+|||||++|.+|.+...      ....++..++ ..+.++|..|++
T Consensus       383 ~~~E~~~l~~l~-----~~~i~~p~~~~~~~~~~~lv~E~~~g~~L~~~l~------~~~~~~~~i~-~~L~~lH~~gii  450 (535)
T PRK09605        383 TRAEARLLSEAR-----RAGVPTPVIYDVDPEEKTIVMEYIGGKDLKDVLE------GNPELVRKVG-EIVAKLHKAGIV  450 (535)
T ss_pred             HHHHHHHHHhhc-----ccCCCeeEEEEEeCCCCEEEEEecCCCcHHHHHH------HHHHHHHHHH-HHHHHHHhCCCc
Confidence            667888777764     3567788888766678899999999999988643      1233444433 457889999999


Q ss_pred             ccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004254          457 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (765)
Q Consensus       457 HaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (765)
                      |+|+||+||++.   +++++++|||+++..++
T Consensus       451 HrDlkp~NILl~---~~~~~liDFGla~~~~~  479 (535)
T PRK09605        451 HGDLTTSNFIVR---DDRLYLIDFGLGKYSDL  479 (535)
T ss_pred             cCCCChHHEEEE---CCcEEEEeCcccccCCc
Confidence            999999999994   68899999999988665

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.37  E-value=2.5e-12  Score=143.73  Aligned_cols=176  Identities=13%  Similarity=0.064  Sum_probs=113.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|..  +|+.||||+...   +                                             .
T Consensus        98 ~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~---~---------------------------------------------~  129 (391)
T PHA03212         98 ETFTPGAEGFAFACIDNKTCEHVVIKAGQR---G---------------------------------------------G  129 (391)
T ss_pred             EEEcCCCCeEEEEEEECCCCCEEEEechhh---h---------------------------------------------h
Confidence            6799999999999998  589999995310   0                                             1


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      +.+|++.+.++.     +++| .+-..+ ......+++||++.| .|.+... ....+....+....  +-..+..+|..
T Consensus       130 ~~~E~~il~~l~-----HpnIv~~~~~~-~~~~~~~lv~e~~~~-~L~~~l~-~~~~l~~~~~~~i~~qi~~aL~ylH~~  201 (391)
T PHA03212        130 TATEAHILRAIN-----HPSIIQLKGTF-TYNKFTCLILPRYKT-DLYCYLA-AKRNIAICDILAIERSVLRAIQYLHEN  201 (391)
T ss_pred             hHHHHHHHHhCC-----CCCCCCEeEEE-EECCeeEEEEecCCC-CHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            123444444432     2332 222222 335567999999975 4544322 12234443333322  22347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||+||+++.  ++.++|+|||++...........     .-..+...++++++...+...+..|++++.-.+.
T Consensus       202 ~IvHrDiKP~NIll~~--~~~vkL~DFG~a~~~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~  274 (391)
T PHA03212        202 RIIHRDIKAENIFINH--PGDVCLGDFGAACFPVDINANKY-----YGWAGTIATNAPELLARDPYGPAVDIWSAGIVLF  274 (391)
T ss_pred             CcccCCCChHhEEEcC--CCCEEEEeCCccccccccccccc-----ccccCccCCCChhhhcCCCCCcHHHHHHHHHHHH
Confidence            9999999999999986  78999999999865432211111     0123456667788777666777889999988776


Q ss_pred             HHHH
Q 004254          534 FFLN  537 (765)
Q Consensus       534 ~~l~  537 (765)
                      +++.
T Consensus       275 ellt  278 (391)
T PHA03212        275 EMAT  278 (391)
T ss_pred             HHHH
Confidence            6653

>PHA02988 hypothetical protein; Provisional

Probab=99.37  E-value=8.4e-12  Score=132.61  Aligned_cols=182  Identities=11%  Similarity=0.010  Sum_probs=117.8

Q ss_pred             CcccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          297 DVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       297 d~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +...|+.|+++.||+|.++|+.||||+.+..-...                             ..++          -+
T Consensus        24 ~~~~i~~g~~~~v~~~~~~~~~vavK~~~~~~~~~-----------------------------~~~~----------~~   64 (283)
T PHA02988         24 TSVLIKENDQNSIYKGIFNNKEVIIRTFKKFHKGH-----------------------------KVLI----------DI   64 (283)
T ss_pred             CCeEEeeCCceEEEEEEECCEEEEEEecccccccc-----------------------------HHHH----------HH
Confidence            34679999999999999999999999874321100                             0000          13


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee---c---cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW---E---YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLE  448 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~---e---~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~  448 (765)
                      |.+|+..+.++.+     +  .+.+.+.   +   .....+++|||++|++|.++.... ...+.......+.  ...+.
T Consensus        65 ~~~E~~~l~~l~h-----~--nIv~~~g~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~-~~~~~~~~~~i~~~i~~~l~  136 (283)
T PHA02988         65 TENEIKNLRRIDS-----N--NILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLDKE-KDLSFKTKLDMAIDCCKGLY  136 (283)
T ss_pred             HHHHHHHHHhcCC-----C--CEEEEeeeEEecccCCCceEEEEEeCCCCcHHHHHhhC-CCCChhHHHHHHHHHHHHHH
Confidence            4556666665532     2  2333332   2   123568999999999999875422 2233322222222  23366


Q ss_pred             HHHh-CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc--CCCCCCCCH
Q 004254          449 QILS-HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM--GVLVPTGDT  525 (765)
Q Consensus       449 qi~~-~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l--G~~~~~~D~  525 (765)
                      .+|. .|++|+|++|.||+++.  ++.++++|||++..++...-.         ..+...++++++..-  +..+...|+
T Consensus       137 ~lH~~~~~~Hrdlkp~nill~~--~~~~kl~dfg~~~~~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~~k~Di  205 (283)
T PHA02988        137 NLYKYTNKPYKNLTSVSFLVTE--NYKLKIICHGLEKILSSPPFK---------NVNFMVYFSYKMLNDIFSEYTIKDDI  205 (283)
T ss_pred             HHHhcCCCCCCcCChhhEEECC--CCcEEEcccchHhhhcccccc---------ccCcccccCHHHhhhccccccchhhh
Confidence            7886 59999999999999986  889999999998765542210         113445666666643  456778899


Q ss_pred             HHHHHHHHHHH
Q 004254          526 TAVRRTAQFFL  536 (765)
Q Consensus       526 ~~l~~~~~~~l  536 (765)
                      +++.-.+.+++
T Consensus       206 ~SlGvil~el~  216 (283)
T PHA02988        206 YSLGVVLWEIF  216 (283)
T ss_pred             hHHHHHHHHHH
Confidence            99987766554

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.37  E-value=6.8e-12  Score=130.88  Aligned_cols=181  Identities=15%  Similarity=0.116  Sum_probs=117.6

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||.|++|.||+|++ ++..||||+.++....                                           +-+|
T Consensus        12 ~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~~-------------------------------------------~~~~   48 (262)
T cd05071          12 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS-------------------------------------------PEAF   48 (262)
T ss_pred             eecCCCCCCcEEEEEecCCceEEEEecccCccC-------------------------------------------HHHH
Confidence            4699999999999998 4567999987431100                                           0134


Q ss_pred             HHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          378 TQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      .+|...+.++.     ++++ .+...+  .....+++|||++|++|.++..... ...+...+.....  -..+..+|..
T Consensus        49 ~~E~~~l~~l~-----~~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~  121 (262)
T cd05071          49 LQEAQVMKKLR-----HEKLVQLYAVV--SEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM  121 (262)
T ss_pred             HHHHHHHHhCC-----CCCcceEEEEE--CCCCcEEEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            55555555542     2222 222222  2345699999999999988654221 2233333333222  2346778999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|+||++++  ++.++|+|||.+..++.......     .....+..++.++....+..+...|++++...+.
T Consensus       122 ~i~H~dl~p~Nill~~--~~~~~L~dfg~~~~~~~~~~~~~-----~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~  194 (262)
T cd05071         122 NYVHRDLRAANILVGE--NLVCKVADFGLARLIEDNEYTAR-----QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLT  194 (262)
T ss_pred             CccccccCcccEEEcC--CCcEEeccCCceeeccccccccc-----cCCcccceecCHhHhccCCCCchhhHHHHHHHHH
Confidence            9999999999999986  88999999999987764331110     0112344577788776666777889999887665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       195 ell  197 (262)
T cd05071         195 ELT  197 (262)
T ss_pred             HHH
Confidence            554

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.37  E-value=4e-12  Score=132.41  Aligned_cols=191  Identities=15%  Similarity=0.180  Sum_probs=117.3

Q ss_pred             hhhhhcccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHH
Q 004254          289 LDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE  366 (765)
Q Consensus       289 ~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E  366 (765)
                      ++..|...  +.||.|++|+||+|..  +++.||||+....-..                                    
T Consensus         4 ~~~~y~~~--~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~------------------------------------   45 (272)
T cd06637           4 PAGIFELV--ELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDE------------------------------------   45 (272)
T ss_pred             hhhhhhHH--HheeecCCeEEEEEEEcCCCcEEEEEEEEcCCcc------------------------------------
Confidence            34444332  5699999999999998  5899999987321100                                    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-cccceeeec-----cCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHH
Q 004254          367 CASVLYQEIDYTQEAANAELFASNFKDMDY-VKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLG  439 (765)
Q Consensus       367 ~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~-V~vP~vy~e-----~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia  439 (765)
                             +.++..|...+.++.    ++++ +.+...+..     .....+++|||+.|++|.++..... .......+.
T Consensus        46 -------~~~~~~e~~~l~~~~----~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~  114 (272)
T cd06637          46 -------EEEIKQEINMLKKYS----HHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIA  114 (272)
T ss_pred             -------HHHHHHHHHHHHHhc----CCCCeeeEeeEEeecCCCCCCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHH
Confidence                   112233333333331    1222 222222221     1234689999999999988654322 223333333


Q ss_pred             HHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-
Q 004254          440 RYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-  516 (765)
Q Consensus       440 ~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-  516 (765)
                      ..+  +-..+..+|..|++|+|+||+||++++  ++.++++|||++..+.......      ....+...++++++... 
T Consensus       115 ~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~--~~~~~l~Dfg~~~~~~~~~~~~------~~~~g~~~y~aPE~~~~~  186 (272)
T cd06637         115 YICREILRGLSHLHQHKVIHRDIKGQNVLLTE--NAEVKLVDFGVSAQLDRTVGRR------NTFIGTPYWMAPEVIACD  186 (272)
T ss_pred             HHHHHHHHHHHHHHHCCCccCCCCHHHEEECC--CCCEEEccCCCceecccccccC------CcccccccccCHhHhccc
Confidence            222  233467899999999999999999986  7899999999988765432111      11124455677777642 


Q ss_pred             ----CCCCCCCCHHHHHHHHHHHH
Q 004254          517 ----GVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       517 ----G~~~~~~D~~~l~~~~~~~l  536 (765)
                          +..+...|++++...+.+++
T Consensus       187 ~~~~~~~~~~~Dv~slGv~l~el~  210 (272)
T cd06637         187 ENPDATYDFKSDLWSLGITAIEMA  210 (272)
T ss_pred             cCcCCCCCchhhHHHHHHHHHHHH
Confidence                23455689999887666554

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=4.3e-12  Score=144.66  Aligned_cols=180  Identities=18%  Similarity=0.173  Sum_probs=114.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.+|.||-|.|-.|++  +|+.+||||..-...-                                 -+..-..+.+|+-
T Consensus        18 kTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~---------------------------------s~s~~~~IerEIv   64 (786)
T KOG0588|consen   18 KTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSEL---------------------------------SSSQPAGIEREIV   64 (786)
T ss_pred             ccccCCCCceehhhhcccccceeEEEeecccccc---------------------------------ccccccchhhhhH
Confidence            5699999999999999  7999999988322100                                 0000111222221


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                            -|+.    + .+++|---.-+|+-..+.+||.||++|+.|.++.- .+.++...+-+....+  ..+..+|..+
T Consensus        65 ------iMkL----i-~HpnVl~LydVwe~~~~lylvlEyv~gGELFdylv-~kG~l~e~eaa~ff~QIi~gv~yCH~~~  132 (786)
T KOG0588|consen   65 ------IMKL----I-EHPNVLRLYDVWENKQHLYLVLEYVPGGELFDYLV-RKGPLPEREAAHFFRQILDGVSYCHAFN  132 (786)
T ss_pred             ------HHHH----h-cCCCeeeeeeeeccCceEEEEEEecCCchhHHHHH-hhCCCCCHHHHHHHHHHHHHHHHHhhhc
Confidence                  1111    1 12333333334555677899999999999999753 3333433333333222  2356678999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTA  532 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~-~~~~D~~~l~~~~  532 (765)
                      |.|+|+||.|++++.  .++|++.||||+..-.+.   .+.    --..+.+.|++++++.---+ ....|+++=...+
T Consensus       133 icHRDLKpENlLLd~--~~nIKIADFGMAsLe~~g---klL----eTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVIL  202 (786)
T KOG0588|consen  133 ICHRDLKPENLLLDV--KNNIKIADFGMASLEVPG---KLL----ETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVIL  202 (786)
T ss_pred             ceeccCCchhhhhhc--ccCEeeeccceeecccCC---ccc----cccCCCcccCCchhhcCCCCCCCccccchhHHHH
Confidence            999999999999987  566999999999864442   122    22467899999998854222 2346888766544

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.37  E-value=7e-12  Score=136.87  Aligned_cols=86  Identities=15%  Similarity=0.064  Sum_probs=63.7

Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004254          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (765)
Q Consensus       445 ~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D  524 (765)
                      ..+..+|..|++|+|+||.||++++  ++.++|+|||++..+.......    -.........+++++...-+..++..|
T Consensus       184 ~aL~~lH~~~ivHrDikp~Nill~~--~~~vkL~DfG~a~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~D  257 (337)
T cd05054         184 RGMEFLASRKCIHRDLAARNILLSE--NNVVKICDFGLARDIYKDPDYV----RKGDARLPLKWMAPESIFDKVYTTQSD  257 (337)
T ss_pred             HHHHHHHhCCeecCCCCcceEEEeC--CCcEEEeccccchhcccCcchh----hccCCCCCccccCcHHhcCCCCCcccc
Confidence            4477889999999999999999986  7899999999998775432110    011122234577888777777888899


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++.-.+.+++
T Consensus       258 i~SlGv~l~el~  269 (337)
T cd05054         258 VWSFGVLLWEIF  269 (337)
T ss_pred             HHHHHHHHHHHH
Confidence            999987766554

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.37  E-value=1.3e-11  Score=128.24  Aligned_cols=186  Identities=12%  Similarity=0.035  Sum_probs=117.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||..++-....                                       ...+.+
T Consensus         8 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~---------------------------------------~~~~~~   48 (267)
T cd08228           8 KKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMD---------------------------------------AKARQD   48 (267)
T ss_pred             eeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCC---------------------------------------HHHHHH
Confidence            5799999999999998  68999999763311000                                       011223


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-h--hcCCCHHHHHHHH--HHHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-D--ELGVDRKRLGRYA--VESYLEQIL  451 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l-~--~~g~d~~~ia~~l--i~~~L~qi~  451 (765)
                      |.+|...+.++.     ++++.-+.-+.......+++|||++|++|.++... .  ....+...+...+  +...+..+|
T Consensus        49 ~~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH  123 (267)
T cd08228          49 CVKEIDLLKQLN-----HPNVIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMH  123 (267)
T ss_pred             HHHHHHHHHhCC-----CcceeeeeeeEEECCeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            445554444432     23222222122234567999999999999876532 1  1123333333222  223467789


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..|++|+|++|.||+++.  ++.++++|||++..+......      .....+...+++++...........|++++...
T Consensus       124 ~~~i~H~dl~~~nil~~~--~~~~~l~d~g~~~~~~~~~~~------~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~  195 (267)
T cd08228         124 SRRVMHRDIKPANVFITA--TGVVKLGDLGLGRFFSSKTTA------AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCL  195 (267)
T ss_pred             hCCeeCCCCCHHHEEEcC--CCCEEECccccceeccchhHH------HhcCCCCccccChhhhccCCCCchhhHHHHHHH
Confidence            999999999999999986  789999999998877653221      111235556777777665555667899988766


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       196 l~el~  200 (267)
T cd08228         196 LYEMA  200 (267)
T ss_pred             HHHHh
Confidence            55543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.37  E-value=5.2e-12  Score=130.57  Aligned_cols=177  Identities=17%  Similarity=0.170  Sum_probs=114.8

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +.||.|++|+||++..+|+.||+|+.+....                                      ..      .+.
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~~iK~~~~~~~--------------------------------------~~------~~~   47 (254)
T cd05083          12 EIIGEGEFGAVLQGEYTGQKVAVKNIKCDVT--------------------------------------AQ------AFL   47 (254)
T ss_pred             eeeccCCCCceEecccCCCceEEEeecCcch--------------------------------------HH------HHH
Confidence            6799999999999998999999997633210                                      00      233


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc-CCCHHHHHHHH--HHHHHHHHHhCCc
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRYA--VESYLEQILSHGF  455 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~-g~d~~~ia~~l--i~~~L~qi~~~Gf  455 (765)
                      +|...+.++    .+..-+.+...+.  ....+++|||++|++|.++...... ..+...+...+  +-..+..+|..|+
T Consensus        48 ~e~~~l~~~----~~~~i~~~~~~~~--~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~  121 (254)
T cd05083          48 EETAVMTKL----HHKNLVRLLGVIL--HNGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKL  121 (254)
T ss_pred             HHHHHHHhC----CCCCcCeEEEEEc--CCCcEEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            344333333    2222233333332  3456999999999999887543221 23433333222  2233678899999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|+||+||+++.  ++.++|+|||.+.........         ......++.++....+..+...|++++...+.++
T Consensus       122 ~H~dl~p~nili~~--~~~~kl~Dfg~~~~~~~~~~~---------~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el  190 (254)
T cd05083         122 VHRDLAARNILVSE--DGVAKVSDFGLARVGSMGVDN---------SKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEV  190 (254)
T ss_pred             eccccCcceEEEcC--CCcEEECCCccceeccccCCC---------CCCCceecCHHHhccCCcCchhhHHHHHHHHHHH
Confidence            99999999999986  789999999998765432110         1112345667766667777788999988766655


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       191 ~  191 (254)
T cd05083         191 F  191 (254)
T ss_pred             H
Confidence            4

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.37  E-value=5.8e-12  Score=132.10  Aligned_cols=186  Identities=16%  Similarity=0.092  Sum_probs=115.7

Q ss_pred             ccccccceeEEEEEEeC-------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      ..||.|++|+||+|.+.       +..||||+.+......                                        
T Consensus        12 ~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~----------------------------------------   51 (277)
T cd05062          12 RELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMR----------------------------------------   51 (277)
T ss_pred             eeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHH----------------------------------------
Confidence            67999999999999863       4679999763321100                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc---------CCCHHHHHHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL---------GVDRKRLGRYA  442 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~---------g~d~~~ia~~l  442 (765)
                       ...+|.+|+.-+..+    . +++|.-..-+....+..++||||++|++|.++......         ..+...+...+
T Consensus        52 -~~~~~~~e~~~l~~l----~-~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (277)
T cd05062          52 -ERIEFLNEASVMKEF----N-CHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMA  125 (277)
T ss_pred             -HHHHHHHHHHHHHhC----C-CCCeeeEEEEEcCCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHH
Confidence             011344444433332    2 23322222222334567999999999999886532111         12223333322


Q ss_pred             --HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004254          443 --VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (765)
Q Consensus       443 --i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~  520 (765)
                        +...+..+|..|++|+|+||.||++++  ++.++++|||++..+........    .........+++++...-+..+
T Consensus       126 ~~l~~~l~~lH~~~~vH~dlkp~Nil~~~--~~~~~l~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~  199 (277)
T cd05062         126 GEIADGMAYLNANKFVHRDLAARNCMVAE--DFTVKIGDFGMTRDIYETDYYRK----GGKGLLPVRWMSPESLKDGVFT  199 (277)
T ss_pred             HHHHHHHHHHHHCCcccCCcchheEEEcC--CCCEEECCCCCccccCCcceeec----CCCCccCHhhcChhHhhcCCcC
Confidence              233468889999999999999999986  88999999999876543211000    0001123567788887777778


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004254          521 PTGDTTAVRRTAQFFL  536 (765)
Q Consensus       521 ~~~D~~~l~~~~~~~l  536 (765)
                      +..|++++.-.+.+++
T Consensus       200 ~~~Di~slG~~l~el~  215 (277)
T cd05062         200 TYSDVWSFGVVLWEIA  215 (277)
T ss_pred             chhHHHHHHHHHHHHH
Confidence            8889999887665443

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.36  E-value=1e-11  Score=128.60  Aligned_cols=180  Identities=21%  Similarity=0.214  Sum_probs=112.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++||.|++|+||+|+.  +|+.||||+.+......                                ..       ...+
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~--------------------------------~~-------~~~~   42 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIA--------------------------------KN-------QVTN   42 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhH--------------------------------HH-------HHHH
Confidence            4799999999999998  68999999874211000                                00       0001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~  452 (765)
                      +..|...+.   ... +++  .+++++.  +.....+++|||++|++|.++.... ...+...+...+  +-..+..+|.
T Consensus        43 ~~~e~~~~~---~~~-~~~--~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~lH~  115 (260)
T cd05611          43 VKAERAIMM---IQG-ESP--YVAKLYYSFQSKDYLYLVMEYLNGGDCASLIKTL-GGLPEDWAKQYIAEVVLGVEDLHQ  115 (260)
T ss_pred             HHHHHHHHh---hcC-CCC--CeeeeeeeEEcCCeEEEEEeccCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            112211111   111 222  2333332  2234579999999999998865321 223333333222  2234678899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      .|++|+|++|.||+++.  ++.++|+|||+.......          ....++..++.++....+......|++++...+
T Consensus       116 ~~i~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~----------~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il  183 (260)
T cd05611         116 RGIIHRDIKPENLLIDQ--TGHLKLTDFGLSRNGLEN----------KKFVGTPDYLAPETILGVGDDKMSDWWSLGCVI  183 (260)
T ss_pred             CCeecCCCCHHHeEECC--CCcEEEeecccceecccc----------ccCCCCcCccChhhhcCCCCcchhhhHHHHHHH
Confidence            99999999999999986  789999999988765431          112345566777776665566778999888766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       184 ~~l~  187 (260)
T cd05611         184 FEFL  187 (260)
T ss_pred             HHHH
Confidence            5544

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.36  E-value=7.2e-12  Score=130.34  Aligned_cols=181  Identities=22%  Similarity=0.207  Sum_probs=114.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|+.  +|+.||+|+.+.......                                    .      .
T Consensus        15 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~------------------------------------~------~   52 (267)
T cd06645          15 QRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDF------------------------------------A------V   52 (267)
T ss_pred             HHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHH------------------------------------H------H
Confidence            5799999999999998  589999998854321110                                    0      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|...+..+    .+..-+.+...+ ......+++|||++|+.|.++.... ...+...+.....+  ..+..+|..|
T Consensus        53 ~~~e~~~~~~l----~h~~ii~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~  126 (267)
T cd06645          53 VQQEIIMMKDC----KHSNIVAYFGSY-LRRDKLWICMEFCGGGSLQDIYHVT-GPLSESQIAYVSRETLQGLYYLHSKG  126 (267)
T ss_pred             HHHHHHHHHhC----CCCCeeeEEEEE-EeCCEEEEEEeccCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            12232222222    121112222222 2345679999999999999865322 22344443333322  3367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCCHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRRT  531 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~---lG~~~~~~D~~~l~~~  531 (765)
                      ++|+|++|+||+++.  ++.++++|||++..+.......      ....++..+++++...   .+......|++++.-.
T Consensus       127 i~H~dlkp~nili~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~i  198 (267)
T cd06645         127 KMHRDIKGANILLTD--NGHVKLADFGVSAQITATIAKR------KSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGIT  198 (267)
T ss_pred             eecCCCCHHHEEECC--CCCEEECcceeeeEccCccccc------ccccCcccccChhhhccccCCCCCchhhhHHHHHH
Confidence            999999999999985  7899999999988765322110      0112455667777763   3445667899998866


Q ss_pred             HHHH
Q 004254          532 AQFF  535 (765)
Q Consensus       532 ~~~~  535 (765)
                      +.++
T Consensus       199 l~~l  202 (267)
T cd06645         199 AIEL  202 (267)
T ss_pred             HHHH
Confidence            5544

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.36  E-value=9.1e-12  Score=128.94  Aligned_cols=186  Identities=14%  Similarity=0.067  Sum_probs=115.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|..  +|+.||+|..++.....                                 .....      +
T Consensus         8 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~---------------------------------~~~~~------~   48 (267)
T cd08224           8 KKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMD---------------------------------AKARQ------D   48 (267)
T ss_pred             eeeccCCceEEEEEEEcCCCCEEEEEEeecccccc---------------------------------hhhHH------H
Confidence            6799999999999999  69999999774311000                                 00011      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh---hcCCCHHHHHHHHHH--HHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYAVE--SYLEQIL  451 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~---~~g~d~~~ia~~li~--~~L~qi~  451 (765)
                      +.+|..-+.++    .+ +++.-+.-+.......+++|||++|++|.++....   ...+....+...+.+  ..+..+|
T Consensus        49 ~~~ei~~l~~~----~~-~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh  123 (267)
T cd08224          49 CLKEIDLLKQL----DH-PNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMH  123 (267)
T ss_pred             HHHHHHHHHhC----CC-CCeeeeeeeeecCCeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            33344333333    12 22222222222345679999999999998764311   112333443333322  2367789


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..|++|+|++|.||+++.  ++.++++|||++..+........      ...+...+++++.......+...|++++...
T Consensus       124 ~~~i~h~dl~p~nil~~~--~~~~~l~d~~~~~~~~~~~~~~~------~~~~~~~y~apE~~~~~~~~~~~Di~slG~i  195 (267)
T cd08224         124 SKRIMHRDIKPANVFITA--TGVVKLGDLGLGRFFSSKTTAAH------SLVGTPYYMSPERIHENGYNFKSDIWSLGCL  195 (267)
T ss_pred             hCCEecCCcChhhEEECC--CCcEEEeccceeeeccCCCcccc------eecCCccccCHHHhccCCCCchhcHHHHHHH
Confidence            999999999999999986  88999999999887654321110      0123444566776655556667899999876


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       196 l~~l~  200 (267)
T cd08224         196 LYEMA  200 (267)
T ss_pred             HHHHH
Confidence            65554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.36  E-value=3e-12  Score=136.30  Aligned_cols=180  Identities=15%  Similarity=0.156  Sum_probs=114.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ..||.|++|.||+|..  +|..||||...-....                                    -.+      .
T Consensus        28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~------------------------------------~~~------~   65 (292)
T cd06658          28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQ------------------------------------RRE------L   65 (292)
T ss_pred             hcccCCCCeEEEEEEECCCCCEEEEEEEecchHH------------------------------------HHH------H
Confidence            4699999999999998  5899999976211100                                    001      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      +.+|...+..+    . ++++ .+...+ ......+++|||++|.+|.++...  ...+...+.....  -..+..+|..
T Consensus        66 ~~~e~~~l~~l----~-h~~ii~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~--~~l~~~~~~~~~~qi~~~l~~LH~~  137 (292)
T cd06658          66 LFNEVVIMRDY----H-HENVVDMYNSY-LVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIATVCLSVLRALSYLHNQ  137 (292)
T ss_pred             HHHHHHHHHhC----C-CCcHHHHHHhe-ecCCeEEEEEeCCCCCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            22333322222    1 1221 111122 224567999999999999886532  2234444333322  2346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|.||++++  ++.++|+|||++..+.......      ....+...++++++..-...+...|++++...+.
T Consensus       138 ~ivH~dlkp~Nill~~--~~~~kL~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~  209 (292)
T cd06658         138 GVIHRDIKSDSILLTS--DGRIKLSDFGFCAQVSKEVPKR------KSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVI  209 (292)
T ss_pred             CEeecCCCHHHEEEcC--CCCEEEccCcchhhcccccccC------ceeecCccccCHHHHccCCCCchhhHHHHHHHHH
Confidence            9999999999999986  7899999999987654332211      0112455677788776666677789999887666


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       210 el~  212 (292)
T cd06658         210 EMI  212 (292)
T ss_pred             HHH
Confidence            554

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.36  E-value=1.1e-11  Score=130.44  Aligned_cols=181  Identities=17%  Similarity=0.159  Sum_probs=114.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|..  +|..|++|.......+.                                          .-+
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~------------------------------------------~~~   48 (282)
T cd06643          11 GELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEE------------------------------------------LED   48 (282)
T ss_pred             hhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHH------------------------------------------HHH
Confidence            4699999999999999  58889999773321111                                          012


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      |.+|...+..+     +++++ .+...+ ......++||||++|+.+.+........++...+...+  +-..+..+|..
T Consensus        49 ~~~e~~~l~~l-----~h~~ii~~~~~~-~~~~~~~~v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~  122 (282)
T cd06643          49 YMVEIDILASC-----DHPNIVKLLDAF-YYENNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHEN  122 (282)
T ss_pred             HHHHHHHHHHC-----CCCCeeeEEEEE-eeCCEEEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            34444444333     22332 222222 23456799999999999987543222334444443333  22346888999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-----cCCCCCCCCHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-----MGVLVPTGDTTAV  528 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~-----lG~~~~~~D~~~l  528 (765)
                      |++|+|++|.||+++.  +++++++|||++.........      .....++..++.+++..     ....+...|++++
T Consensus       123 ~i~H~dlkp~nili~~--~~~~kl~dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~sl  194 (282)
T cd06643         123 KIIHRDLKAGNILFTL--DGDIKLADFGVSAKNTRTIQR------RDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSL  194 (282)
T ss_pred             CeeecCCCcccEEEcc--CCCEEEccccccccccccccc------cccccccccccCHhhccccCCCCCCCCccchhhhH
Confidence            9999999999999986  789999999998766432211      00122455677777763     2334456899988


Q ss_pred             HHHHHHH
Q 004254          529 RRTAQFF  535 (765)
Q Consensus       529 ~~~~~~~  535 (765)
                      ...+.++
T Consensus       195 Gvil~el  201 (282)
T cd06643         195 GITLIEM  201 (282)
T ss_pred             HHHHHHH
Confidence            7665544

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.36  E-value=7.5e-12  Score=132.40  Aligned_cols=186  Identities=16%  Similarity=0.100  Sum_probs=115.4

Q ss_pred             ccccccceeEEEEEEeC-------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||.|++|.||+|..+       +..||||+......                                         .
T Consensus        12 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~-----------------------------------------~   50 (288)
T cd05061          12 RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESAS-----------------------------------------L   50 (288)
T ss_pred             eeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCC-----------------------------------------H
Confidence            67999999999999751       45899997632110                                         0


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc---------CCCHHHHHHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL---------GVDRKRLGRYA  442 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~---------g~d~~~ia~~l  442 (765)
                      ..+.++.+|...+.++.     +++|....-+.......+++|||++|++|.+.......         ......+...+
T Consensus        51 ~~~~~~~~e~~~l~~l~-----~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  125 (288)
T cd05061          51 RERIEFLNEASVMKGFT-----CHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMA  125 (288)
T ss_pred             HHHHHHHHHHHHHHhCC-----CCCeeeEEEEEcCCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHH
Confidence            11223455555554442     23332222222334567999999999999987532111         11222332222


Q ss_pred             --HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004254          443 --VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (765)
Q Consensus       443 --i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~  520 (765)
                        +...+..+|..|++|+|+||.||+++.  ++.++|+|||++..+....-..-    .........++.++...-+..+
T Consensus       126 ~~l~~~l~~lH~~~i~H~dikp~nili~~--~~~~~L~Dfg~~~~~~~~~~~~~----~~~~~~~~~y~~pE~~~~~~~~  199 (288)
T cd05061         126 AEIADGMAYLNAKKFVHRDLAARNCMVAH--DFTVKIGDFGMTRDIYETDYYRK----GGKGLLPVRWMAPESLKDGVFT  199 (288)
T ss_pred             HHHHHHHHHHHhCCCcCCCCChheEEEcC--CCcEEECcCCccccccccccccc----cCCCcccccccCHHHhccCCCC
Confidence              223467889999999999999999986  88999999999886543221000    0000113446677777667777


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004254          521 PTGDTTAVRRTAQFFL  536 (765)
Q Consensus       521 ~~~D~~~l~~~~~~~l  536 (765)
                      +..|++++.-.+.+++
T Consensus       200 ~~~DvwslG~~l~el~  215 (288)
T cd05061         200 TSSDMWSFGVVLWEIT  215 (288)
T ss_pred             hHhHHHHHHHHHHHHH
Confidence            7889999887665443

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.36  E-value=8.7e-12  Score=129.57  Aligned_cols=182  Identities=15%  Similarity=0.128  Sum_probs=116.1

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      ..||+|++|+||+|.+ .+..||+|+.+++-..                                           +-+|
T Consensus        12 ~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~~-------------------------------------------~~~~   48 (260)
T cd05069          12 VKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMM-------------------------------------------PEAF   48 (260)
T ss_pred             eeecCcCCCeEEEEEEcCCceEEEEEcccCCcc-------------------------------------------HHHH
Confidence            5799999999999998 4568999987553210                                           0123


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      .+|.+.+.++    .+..-+.+...+  .....+++|||++|++|.++..... ...+...+....  +-..+..+|..|
T Consensus        49 ~~E~~~l~~l----~h~~i~~~~~~~--~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~  122 (260)
T cd05069          49 LQEAQIMKKL----RHDKLVPLYAVV--SEEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMN  122 (260)
T ss_pred             HHHHHHHHhC----CCCCeeeEEEEE--cCCCcEEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            4444444433    222223333333  2345799999999999988654221 123333332222  223467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|++|+||++++  ++.++|+|||.+..+........     ........+++++....+..+...|++++.-.+.+
T Consensus       123 i~H~dl~~~Nill~~--~~~~~l~dfg~~~~~~~~~~~~~-----~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~e  195 (260)
T cd05069         123 YIHRDLRAANILVGD--NLVCKIADFGLARLIEDNEYTAR-----QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE  195 (260)
T ss_pred             EeecccCcceEEEcC--CCeEEECCCccceEccCCccccc-----CCCccchhhCCHHHhccCCcChHHHHHHHHHHHHH
Confidence            999999999999986  88999999999987654321110     00112344667777766667777899988776655


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       196 l~  197 (260)
T cd05069         196 LV  197 (260)
T ss_pred             HH
Confidence            43

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.36  E-value=7e-12  Score=130.97  Aligned_cols=183  Identities=15%  Similarity=0.087  Sum_probs=111.9

Q ss_pred             cccccceeEEEEEEe-C---CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL-K---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       300 PIgsaSiGQVhrA~l-~---G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .||+|++|.||+|.. +   +..||+|..+.....                                         ..+.
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~-----------------------------------------~~~~   40 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASV-----------------------------------------QEQM   40 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCCh-----------------------------------------HHHH
Confidence            589999999999987 2   467999976432110                                         1123


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhc----CCCHHHHHHH--HHHHHH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDEL----GVDRKRLGRY--AVESYL  447 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~----g~d~~~ia~~--li~~~L  447 (765)
                      +|.+|...+.++.     +++  +++++.  ......++||||++|++|.++......    ..+...+...  .+...+
T Consensus        41 ~~~~E~~~l~~l~-----h~~--iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al  113 (269)
T cd05087          41 KFLEEAQPYRSLQ-----HSN--LLQCLGQCTEVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGL  113 (269)
T ss_pred             HHHHHHHHHHhCC-----CCC--EeeEEEEEcCCCCcEEEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHH
Confidence            5566666555542     233  233332  334567999999999999886532111    1222222111  122346


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-------CCC
Q 004254          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-------VLV  520 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-------~~~  520 (765)
                      ..+|..|++|+|+||.||+++.  ++.++|+|||++..........-    .........++++++....       ..+
T Consensus       114 ~~lH~~~i~H~dlkp~nil~~~--~~~~kL~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~~~~  187 (269)
T cd05087         114 LHLHKNNFIHSDLALRNCLLTA--DLTVKIGDYGLSHNKYKEDYYVT----PDQLWVPLRWIAPELVDEVHGNLLVVDQT  187 (269)
T ss_pred             HHHHHCCEeccccCcceEEEcC--CCcEEECCccccccccCcceeec----CCCcCCcccccCHhHhccccccccccCCC
Confidence            7889999999999999999986  78999999999865432211000    0001123456677766421       135


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004254          521 PTGDTTAVRRTAQFFL  536 (765)
Q Consensus       521 ~~~D~~~l~~~~~~~l  536 (765)
                      ...|++++...+.+++
T Consensus       188 ~~~DiwslG~~l~el~  203 (269)
T cd05087         188 KESNVWSLGVTIWELF  203 (269)
T ss_pred             ccchhHHHHHHHHHHH
Confidence            5789999887665543

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.36  E-value=2.4e-12  Score=147.13  Aligned_cols=179  Identities=14%  Similarity=0.029  Sum_probs=117.1

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      ...||.|++|.||+|+.  .++.||||.....                                                
T Consensus       174 ~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~~------------------------------------------------  205 (461)
T PHA03211        174 HRALTPGSEGCVFESSHPDYPQRVVVKAGWYA------------------------------------------------  205 (461)
T ss_pred             EEEEccCCCeEEEEEEECCCCCEEEEeccccc------------------------------------------------
Confidence            35799999999999999  5899999943100                                                


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~  453 (765)
                      .+.+|++.+.++.     +++|.-..-+.......+|+||++.| .|.+........++...+...+.+  ..+..+|..
T Consensus       206 ~~~~E~~iL~~L~-----HpnIv~l~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~  279 (461)
T PHA03211        206 SSVHEARLLRRLS-----HPAVLALLDVRVVGGLTCLVLPKYRS-DLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGE  279 (461)
T ss_pred             CHHHHHHHHHHCC-----CCCCCcEEEEEEECCEEEEEEEccCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            1123444444442     23332222222335667999999976 454433222223454444443333  347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||+|||++.  ++.++|+|||++..+........    .....+...++++++..-+..+...|++++...+.
T Consensus       280 gIvHrDLKP~NILl~~--~~~vkL~DFGla~~~~~~~~~~~----~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~  353 (461)
T PHA03211        280 GIIHRDIKTENVLVNG--PEDICLGDFGAACFARGSWSTPF----HYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIF  353 (461)
T ss_pred             CEEECcCCHHHEEECC--CCCEEEcccCCceeccccccccc----ccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHH
Confidence            9999999999999985  78999999999887644321111    11124667788888887666777889999987766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       354 El~  356 (461)
T PHA03211        354 EAA  356 (461)
T ss_pred             HHH
Confidence            554

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.36  E-value=6.2e-12  Score=139.42  Aligned_cols=86  Identities=15%  Similarity=0.096  Sum_probs=63.1

Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004254          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (765)
Q Consensus       445 ~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D  524 (765)
                      ..+..+|..|++|+|+||.||++++  ++.++|+|||++..+........    .........+++++....+..++..|
T Consensus       223 ~aL~yLH~~giiHrDLkp~Nil~~~--~~~~kL~DfGla~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~D  296 (374)
T cd05106         223 QGMDFLASKNCIHRDVAARNVLLTD--GRVAKICDFGLARDIMNDSNYVV----KGNARLPVKWMAPESIFDCVYTVQSD  296 (374)
T ss_pred             HHHHHHHHCCEEeccCchheEEEeC--CCeEEEeeceeeeeccCCcceee----ccCCCCccceeCHHHhcCCCCCcccc
Confidence            3478889999999999999999986  78999999999987644321110    11111234577888877777888899


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++...+.+++
T Consensus       297 vwSlGvil~ell  308 (374)
T cd05106         297 VWSYGILLWEIF  308 (374)
T ss_pred             HHHHHHHHHHHH
Confidence            999987766554

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.36  E-value=6.3e-12  Score=132.28  Aligned_cols=186  Identities=16%  Similarity=0.112  Sum_probs=117.5

Q ss_pred             ccccccceeEEEEEEe------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +.||.|++|+||.++.      +|+.||+|+.+......                                         
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------------   48 (283)
T cd05080          10 RVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQ-----------------------------------------   48 (283)
T ss_pred             eecccCCCcEEEEeeEccccCCCCceEEEEEeccccChH-----------------------------------------
Confidence            5799999999988653      47899999875432110                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLE  448 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~  448 (765)
                      .+-.|.+|.+.+.++.     ++++ .+...+... ....+++|||++|++|.+....  ..++...+...+.+  ..+.
T Consensus        49 ~~~~~~~E~~~l~~l~-----h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~--~~l~~~~~~~i~~~l~~~l~  121 (283)
T cd05080          49 NTSGWKKEINILKTLY-----HENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPK--HKLNLAQLLLFAQQICEGMA  121 (283)
T ss_pred             HHHHHHHHHHHHHhCC-----CCCEeeEEEEEecCCCceEEEEecCCCCCCHHHHHHH--cCCCHHHHHHHHHHHHHHHH
Confidence            0113344554444432     2322 222222121 1236899999999999886532  33555544443333  3478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      .+|..|++|+|++|.||++++  ++.++|.|||++..+.......  .+ .........++.++....+..++..|++++
T Consensus       122 ~lH~~~i~H~dlkp~Nili~~--~~~~~l~dfg~~~~~~~~~~~~--~~-~~~~~~~~~~~~PE~~~~~~~~~~~Di~sl  196 (283)
T cd05080         122 YLHSQHYIHRDLAARNVLLDN--DRLVKIGDFGLAKAVPEGHEYY--RV-REDGDSPVFWYAVECLKENKFSYASDVWSF  196 (283)
T ss_pred             HHHHCCeeccccChheEEEcC--CCcEEEeecccccccCCcchhh--cc-CCCCCCCceeeCHhHhcccCCCcccccHHH
Confidence            889999999999999999985  7899999999988775432210  00 000112233566676666777788999999


Q ss_pred             HHHHHHHHH
Q 004254          529 RRTAQFFLN  537 (765)
Q Consensus       529 ~~~~~~~l~  537 (765)
                      ...+.+++.
T Consensus       197 G~~l~el~t  205 (283)
T cd05080         197 GVTLYELLT  205 (283)
T ss_pred             HHHHHHHHh
Confidence            877766653

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.36  E-value=1.1e-11  Score=129.29  Aligned_cols=184  Identities=14%  Similarity=0.055  Sum_probs=116.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ..||.|++|.||+|++  +++.|+||.........                                          .-+
T Consensus        14 ~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~------------------------------------------~~~   51 (268)
T cd06624          14 VVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRY------------------------------------------VQP   51 (268)
T ss_pred             EEEecCCceEEEEeEecCCCcEEEEEEecCCCHHH------------------------------------------HHH
Confidence            6799999999999998  57899999764322111                                          113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCC--CHHHHHHH--HHHHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGV--DRKRLGRY--AVESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~--d~~~ia~~--li~~~L~qi~~  452 (765)
                      +.+|+..+.+++     +++|.-..-+.......+++|||++|.+|.+.........  +...+...  .+...+..+|.
T Consensus        52 ~~~e~~~l~~l~-----h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~  126 (268)
T cd06624          52 LHEEIALHSYLK-----HRNIVQYLGSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHD  126 (268)
T ss_pred             HHHHHHHHHhcC-----CCCeeeeeeeeccCCEEEEEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            344555444442     2332221112233456799999999999998654322222  33333322  23345778899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC--CCCCCCHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV--LVPTGDTTAVRR  530 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~--~~~~~D~~~l~~  530 (765)
                      .|++|+|++|.||+++. .++.++|+|||++..+.......      ....++..+++++....+.  .....|++++..
T Consensus       127 ~~i~h~dl~p~nil~~~-~~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGv  199 (268)
T cd06624         127 NQIVHRDIKGDNVLVNT-YSGVVKISDFGTSKRLAGINPCT------ETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGC  199 (268)
T ss_pred             CCEeecCCCHHHEEEcC-CCCeEEEecchhheecccCCCcc------ccCCCCccccChhhhccccccCCchhhhHHHHH
Confidence            99999999999999974 35789999999987764322100      0113455667777765433  456679998887


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+..++
T Consensus       200 vl~~l~  205 (268)
T cd06624         200 TIVEMA  205 (268)
T ss_pred             HHHHHH
Confidence            665554

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>PTZ00284 protein kinase; Provisional

Probab=99.35  E-value=3e-12  Score=145.95  Aligned_cols=186  Identities=15%  Similarity=0.092  Sum_probs=112.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|+||.||+|..  +|+.||||+.+...                                     ........|+.
T Consensus       135 ~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-------------------------------------~~~~~~~~e~~  177 (467)
T PTZ00284        135 SLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-------------------------------------KYTRDAKIEIQ  177 (467)
T ss_pred             EEEEeccCEEEEEEEEcCCCeEEEEEEEecch-------------------------------------hhHHHHHHHHH
Confidence            5799999999999998  58999999874210                                     00111223444


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh-C
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS-H  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~-~  453 (765)
                      +..+.+....    ......+.+...+.......++|||++ |..|.++.. ....+....+...+.  -..+.++|. .
T Consensus       178 ~l~~l~~~~~----~~~~~i~~i~~~~~~~~~~~~iv~~~~-g~~l~~~l~-~~~~l~~~~~~~i~~qi~~aL~yLH~~~  251 (467)
T PTZ00284        178 FMEKVRQADP----ADRFPLMKIQRYFQNETGHMCIVMPKY-GPCLLDWIM-KHGPFSHRHLAQIIFQTGVALDYFHTEL  251 (467)
T ss_pred             HHHHHhhcCc----ccCcceeeeEEEEEcCCceEEEEEecc-CCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            4333322110    011112223333333334578999998 555655432 112234433333332  234788897 5


Q ss_pred             CccccCCCCCcEEEeecC--------------CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004254          454 GFFHADPHPGNIAVDDVN--------------GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  519 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~--------------~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~  519 (765)
                      |++|+|+||+|||++...              ...++|+|||.+.......         ....+...+++++++..+..
T Consensus       252 gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~~---------~~~~gt~~Y~APE~~~~~~~  322 (467)
T PTZ00284        252 HLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDERHSR---------TAIVSTRHYRSPEVVLGLGW  322 (467)
T ss_pred             CeecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccCcccc---------ccccCCccccCcHHhhcCCC
Confidence            999999999999997511              1259999999875433221         11235677888988877667


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 004254          520 VPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       520 ~~~~D~~~l~~~~~~~l  536 (765)
                      ....|++++.-.+.+++
T Consensus       323 ~~~~DiwSlGvil~ell  339 (467)
T PTZ00284        323 MYSTDMWSMGCIIYELY  339 (467)
T ss_pred             CcHHHHHHHHHHHHHHH
Confidence            77789999987766654

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.35  E-value=1.4e-11  Score=131.84  Aligned_cols=182  Identities=15%  Similarity=0.161  Sum_probs=112.1

Q ss_pred             ccccccceeEEEEEEe--CCeEE--EEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEV--VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~V--AVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      +.||.|++|+||+|++  +|..+  ++|.......+.                                   .      .
T Consensus        13 ~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------~------~   51 (303)
T cd05088          13 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD-----------------------------------D------H   51 (303)
T ss_pred             eeecCCCCceEEEEEEccCCceeeEEEEEecccCCHH-----------------------------------H------H
Confidence            6799999999999998  46554  555442211100                                   0      1


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceee--eccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCHHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKR  437 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy--~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~~~  437 (765)
                      -++.+|...+.++.    ++++  +++++  .......+++|||++|++|.++.....               ..++...
T Consensus        52 ~~~~~Ei~~l~~l~----~h~~--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  125 (303)
T cd05088          52 RDFAGELEVLCKLG----HHPN--IINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ  125 (303)
T ss_pred             HHHHHHHHHHHHhc----CCCC--cceEEEEECCCCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHH
Confidence            12334444444432    2233  33333  234456799999999999988653211               1123333


Q ss_pred             HHHHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004254          438 LGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (765)
Q Consensus       438 ia~~li--~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~  515 (765)
                      +...+.  -..+..+|..|++|+|++|.||++++  ++.++|+|||++...........       ......+++++...
T Consensus       126 ~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~--~~~~kl~dfg~~~~~~~~~~~~~-------~~~~~~y~aPE~~~  196 (303)
T cd05088         126 LLHFAADVARGMDYLSQKQFIHRDLAARNILVGE--NYVAKIADFGLSRGQEVYVKKTM-------GRLPVRWMAIESLN  196 (303)
T ss_pred             HHHHHHHHHHHHHHHHhCCccccccchheEEecC--CCcEEeCccccCcccchhhhccc-------CCCcccccCHHHHh
Confidence            333322  23467889999999999999999986  78999999999864322111000       01123466677766


Q ss_pred             cCCCCCCCCHHHHHHHHHHHH
Q 004254          516 MGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       516 lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      .....+..|++++.-.+.+++
T Consensus       197 ~~~~~~~~Di~slG~il~ell  217 (303)
T cd05088         197 YSVYTTNSDVWSYGVLLWEIV  217 (303)
T ss_pred             ccCCcccccchhhhhHHHHHH
Confidence            666777889999987766554

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.35  E-value=8.5e-12  Score=128.88  Aligned_cols=184  Identities=14%  Similarity=0.075  Sum_probs=118.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||.+..  +|+.||+|..+-.....                                   .      .-+
T Consensus         6 ~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~-----------------------------------~------~~~   44 (255)
T cd08219           6 RVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSS-----------------------------------A------VED   44 (255)
T ss_pred             EEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchH-----------------------------------H------HHH
Confidence            6799999999999998  68999999763211000                                   0      002


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      +..|...+..+    . ++++.-..-..+..+..+++|||++|+++.+..... ....+...+...+  +...+.++|..
T Consensus        45 ~~~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~  119 (255)
T cd08219          45 SRKEAVLLAKM----K-HPNIVAFKESFEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEK  119 (255)
T ss_pred             HHHHHHHHHhC----C-CCCcceEEEEEEECCEEEEEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence            23333333332    2 233322222233456679999999999988754321 1223443333322  22347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|.||++++  ++.++++|||++..+.......      ....++..++++++......++..|++++...+.
T Consensus       120 ~i~H~dl~p~nili~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~  191 (255)
T cd08219         120 RVLHRDIKSKNIFLTQ--NGKVKLGDFGSARLLTSPGAYA------CTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILY  191 (255)
T ss_pred             CcccCCCCcceEEECC--CCcEEEcccCcceeeccccccc------ccccCCccccCHHHHccCCcCchhhhhhhchhhe
Confidence            9999999999999986  8899999999998775432211      1123455677788777666777889998876655


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       192 ~l~  194 (255)
T cd08219         192 ELC  194 (255)
T ss_pred             ehh
Confidence            544

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.35  E-value=7.1e-12  Score=131.61  Aligned_cols=185  Identities=14%  Similarity=0.116  Sum_probs=120.0

Q ss_pred             ccccccceeEEEEEEe--CCe----EEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~----~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +.||+|++|+||+|++  +|+    .||+|+..+....                                         .
T Consensus        13 ~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~-----------------------------------------~   51 (279)
T cd05057          13 KVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSP-----------------------------------------K   51 (279)
T ss_pred             ceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCH-----------------------------------------H
Confidence            6899999999999998  343    6899976433210                                         0


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi  450 (765)
                      ....+.+|+..+.++.    +..-+.+....  .+...+++|||++|++|.+.........+...+...+.+  ..+..+
T Consensus        52 ~~~~~~~e~~~l~~l~----h~~i~~~~~~~--~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~L  125 (279)
T cd05057          52 ANKEILDEAYVMASVD----HPHVVRLLGIC--LSSQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYL  125 (279)
T ss_pred             HHHHHHHHHHHHHhCC----CCCcceEEEEE--ecCceEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence            1123455666665542    22222222222  236789999999999999865433333455544443333  346888


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      |..|++|+|++|.||++++  ++.++|+|||++..+...... +.   .........++.++....+......|.+++..
T Consensus       126 H~~~i~H~di~p~nil~~~--~~~~kL~dfg~~~~~~~~~~~-~~---~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~  199 (279)
T cd05057         126 EEKRLVHRDLAARNVLVKT--PQHVKITDFGLAKLLDVDEKE-YH---AEGGKVPIKWMALESILHRIYTHKSDVWSYGV  199 (279)
T ss_pred             HhCCEEecccCcceEEEcC--CCeEEECCCcccccccCcccc-ee---cCCCcccccccCHHHhhcCCcCchhhHHHHHH
Confidence            9999999999999999985  789999999999877643221 10   00011123566777776677777889999876


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       200 ~l~el~  205 (279)
T cd05057         200 TVWELM  205 (279)
T ss_pred             HHHHHh
Confidence            655443

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.35  E-value=8.9e-12  Score=129.58  Aligned_cols=181  Identities=14%  Similarity=0.114  Sum_probs=116.3

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|++|.||.|.. .+..||||..+++-..                                           +-+|
T Consensus        10 ~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~~-------------------------------------------~~~~   46 (256)
T cd05113          10 KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS-------------------------------------------EDEF   46 (256)
T ss_pred             eEecCcccceEEEEEecCCCcEEEEEcCCCccc-------------------------------------------HHHH
Confidence            5799999999999998 4567999976432100                                           1124


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      .+|...+.++.     +++  +++.+.  ......+++|||++|+.|.+.........+...+...+.  -..+..+|..
T Consensus        47 ~~e~~~l~~l~-----h~~--i~~~~~~~~~~~~~~lv~e~~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~  119 (256)
T cd05113          47 IEEAKVMMKLS-----HEK--LVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESK  119 (256)
T ss_pred             HHHHHHHhcCC-----CCC--eeeEEEEEccCCCcEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            44555444432     232  334443  223456999999999999886543222345444443332  2336788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||+||++++  ++.++++|||++..+....-...     ........++.++....+......|++++.-.+.
T Consensus       120 ~i~H~dl~p~nili~~--~~~~kl~d~g~~~~~~~~~~~~~-----~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~  192 (256)
T cd05113         120 QFIHRDLAARNCLVDD--QGCVKVSDFGLSRYVLDDEYTSS-----VGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMW  192 (256)
T ss_pred             CeeccccCcceEEEcC--CCCEEECCCccceecCCCceeec-----CCCccChhhCCHHHHhcCcccchhHHHHHHHHHH
Confidence            9999999999999985  78999999999876543211000     0011234466677776666777889999886655


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       193 ~l~  195 (256)
T cd05113         193 EVY  195 (256)
T ss_pred             HHh
Confidence            543

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.35  E-value=1e-11  Score=128.95  Aligned_cols=121  Identities=13%  Similarity=0.106  Sum_probs=81.4

Q ss_pred             eEEEEeecCCCChhhhhhhhhc-----CCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecc
Q 004254          410 QILTMEYVPGIKINRIQSLDEL-----GVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGM  482 (765)
Q Consensus       410 ~vLVMEyieG~~L~d~~~l~~~-----g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGl  482 (765)
                      .+++|||++|++|.+.......     ..+...+...+  +-..+.++|..|++|+|++|.||++++  ++.++++|||+
T Consensus        82 ~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~--~~~~kl~dfg~  159 (273)
T cd05035          82 PMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLRE--DMTVCVADFGL  159 (273)
T ss_pred             cEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECC--CCeEEECCccc
Confidence            5899999999999876532211     23333333322  223468889999999999999999986  78999999999


Q ss_pred             eeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          483 MGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       483 v~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +..+.........    ........+++++....+..+...|++++...+.+++
T Consensus       160 ~~~~~~~~~~~~~----~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~  209 (273)
T cd05035         160 SKKIYSGDYYRQG----RIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIA  209 (273)
T ss_pred             eeecccccccccc----ccccCCccccCHhhcccCCCCcccchHHHHHHHHHHH
Confidence            8876443211000    0111223456677666667778899999987766554

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.35  E-value=9.9e-12  Score=128.97  Aligned_cols=182  Identities=15%  Similarity=0.143  Sum_probs=119.0

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|++|.||+|.. +|+.||||..+++...                                           .-+|
T Consensus        12 ~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~-------------------------------------------~~~~   48 (260)
T cd05067          12 KKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMS-------------------------------------------PEAF   48 (260)
T ss_pred             eeeccCccceEEeeecCCCceEEEEEecCCCCc-------------------------------------------HHHH
Confidence            5799999999999999 7899999987432211                                           0134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      .+|...+.++.    +..-+.+..++  .....+++|||++|++|.+..... ....+...+...+.  -..+..+|..|
T Consensus        49 ~~E~~~l~~l~----h~~i~~~~~~~--~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~  122 (260)
T cd05067          49 LAEANLMKQLQ----HPRLVRLYAVV--TQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKN  122 (260)
T ss_pred             HHHHHHHHhcC----CcCeeeEEEEE--ccCCcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            44554444432    21112222222  134579999999999998865322 22334444333322  23468889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|++|.||++++  ++.+.++|||++..+........     ........++.++....+..++..|++++...+.+
T Consensus       123 i~H~dl~p~ni~i~~--~~~~~l~dfg~~~~~~~~~~~~~-----~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~e  195 (260)
T cd05067         123 YIHRDLRAANILVSE--TLCCKIADFGLARLIEDNEYTAR-----EGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTE  195 (260)
T ss_pred             eecccccHHhEEEcC--CCCEEEccCcceeecCCCCcccc-----cCCcccccccCHHHhccCCcCcccchHHHHHHHHH
Confidence            999999999999986  88999999999987763221100     01122345677777777777788899999876655


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       196 l~  197 (260)
T cd05067         196 IV  197 (260)
T ss_pred             HH
Confidence            54

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.35  E-value=9.7e-12  Score=127.86  Aligned_cols=187  Identities=18%  Similarity=0.112  Sum_probs=115.0

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||+|++|+||+|+.  +|+.|++|+.........                               ..+..+.+..|+
T Consensus         5 ~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~-------------------------------~~~~~~~~~~e~   53 (258)
T cd06632           5 GELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQT-------------------------------GQEAVKQLEQEI   53 (258)
T ss_pred             cceeeecCCceEEEEEEcCCCcEEEEEEEEEcccccc-------------------------------chHHHHHHHHHH
Confidence            36799999999999998  589999998743221110                               011111222333


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      +.      +..+    .+..-+.+.. +.......+++|||++|.+|.++.... ...+...+...+  +-..+..+|..
T Consensus        54 ~~------l~~~----~h~~i~~~~~-~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~  121 (258)
T cd06632          54 AL------LSKL----QHPNIVQYLG-TEREEDNLYIFLELVPGGSLAKLLKKY-GSFPEPVIRLYTRQILLGLEYLHDR  121 (258)
T ss_pred             HH------HHhc----CCCCchheee-eEecCCeEEEEEEecCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            22      2222    1211122222 222235679999999999998875322 123333332222  22346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~-~~~~~D~~~l~~~~  532 (765)
                      |++|+|++|+||++++  ++.++|+|||+...+.....       .....++..++.++....+. .+...|++++...+
T Consensus       122 ~i~H~dl~~~ni~~~~--~~~~kl~d~~~~~~~~~~~~-------~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l  192 (258)
T cd06632         122 NTVHRDIKGANILVDT--NGVVKLADFGMAKQVVEFSF-------AKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTV  192 (258)
T ss_pred             CcccCCCCHHHEEECC--CCCEEEccCccceecccccc-------ccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHH
Confidence            9999999999999986  88999999999887654331       01123445566677665544 56678999887665


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       193 ~~l~  196 (258)
T cd06632         193 LEMA  196 (258)
T ss_pred             HHHH
Confidence            5544

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.35  E-value=5.7e-12  Score=132.50  Aligned_cols=186  Identities=18%  Similarity=0.186  Sum_probs=115.0

Q ss_pred             ccccccceeEEEEEEe------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +.||+|++|.||+|..      +|+.||||..+......                                         
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~-----------------------------------------   48 (284)
T cd05081          10 QQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEH-----------------------------------------   48 (284)
T ss_pred             eeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHH-----------------------------------------
Confidence            6799999999999984      47899999874432111                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLE  448 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~  448 (765)
                       .-+|.+|.+.+.++    . ++++ .+..+.... ....+++|||++|++|.++........+...+....  +-..+.
T Consensus        49 -~~~~~~e~~~l~~l----~-h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~  122 (284)
T cd05081          49 -LRDFEREIEILKSL----Q-HDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGME  122 (284)
T ss_pred             -HHHHHHHHHHHHhC----C-CCCeeEEEEEEccCCCCceEEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHH
Confidence             01233444444433    2 2322 111111111 124689999999999998754322233444333322  223477


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      .+|..|++|+|+||.||++++  +++++|+|||++..+.........   .........++.++....+......|++++
T Consensus       123 ~LH~~~i~H~dlkp~nili~~--~~~~~l~dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  197 (284)
T cd05081         123 YLGSKRYVHRDLATRNILVES--ENRVKIGDFGLTKVLPQDKEYYKV---REPGESPIFWYAPESLTESKFSVASDVWSF  197 (284)
T ss_pred             HHHHCCceeccCCHhhEEECC--CCeEEECCCcccccccCCCcceee---cCCCCCceEeeCHHHhccCCcChHHHHHHH
Confidence            889999999999999999986  889999999999877543211000   000011122556666665666777899998


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      ...+.+++
T Consensus       198 G~~l~el~  205 (284)
T cd05081         198 GVVLYELF  205 (284)
T ss_pred             HHHHHHHh
Confidence            87766654

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.35  E-value=6.2e-12  Score=131.16  Aligned_cols=187  Identities=16%  Similarity=0.154  Sum_probs=116.4

Q ss_pred             ccccccceeEEEEEEe--CC---eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KG---EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G---~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +-||.|++|.||+|++  +|   ..||||+......+.                                   ..     
T Consensus        10 ~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~-----   49 (269)
T cd05065          10 EVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEK-----------------------------------QR-----   49 (269)
T ss_pred             eEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHH-----------------------------------HH-----
Confidence            5699999999999998  34   369999875432111                                   00     


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQIL  451 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~  451 (765)
                       -+|..|+..+..+    . ++++.-..-+.......++||||++|++|.++........+...+...+.  -..+..+|
T Consensus        50 -~~~~~e~~~l~~l----~-h~ni~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH  123 (269)
T cd05065          50 -RDFLSEASIMGQF----D-HPNIIHLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLS  123 (269)
T ss_pred             -HHHHHHHHHHHhC----C-CcCcceEEEEECCCCceEEEEecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence             1234455444433    1 23332222222334567999999999999887644333345544444332  23467889


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHH-HHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG-LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~-l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      ..|++|+|+||.||+++.  ++.++++|||.+..+....... +.... + ......++.++...-+..+...|++++..
T Consensus       124 ~~g~~H~dl~p~nili~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~~-~-~~~~~~y~~PE~~~~~~~~~~~DvwslG~  199 (269)
T cd05065         124 EMNYVHRDLAARNILVNS--NLVCKVSDFGLSRFLEDDTSDPTYTSSL-G-GKIPIRWTAPEAIAYRKFTSASDVWSYGI  199 (269)
T ss_pred             HCCEeecccChheEEEcC--CCcEEECCCccccccccCcccccccccc-C-CCcceeecCHhHhccCcccchhhhhhhHH
Confidence            999999999999999985  7899999999987664322110 00000 0 00122456677766666677789998876


Q ss_pred             HHHHH
Q 004254          531 TAQFF  535 (765)
Q Consensus       531 ~~~~~  535 (765)
                      .+.++
T Consensus       200 ~l~e~  204 (269)
T cd05065         200 VMWEV  204 (269)
T ss_pred             HHHHH
Confidence            65543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.35  E-value=9.2e-12  Score=128.88  Aligned_cols=182  Identities=15%  Similarity=0.140  Sum_probs=119.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++||.|++|.||+|..  +|+.||+|+........                                       ....-+
T Consensus         6 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~---------------------------------------~~~~~~   46 (258)
T cd05578           6 RVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVE---------------------------------------KGSVRN   46 (258)
T ss_pred             EEeccCCCceEEEEEEccCCcEEEEEEEehhhhcc---------------------------------------hhHHHH
Confidence            6899999999999999  49999999874311000                                       000112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~  452 (765)
                      +.+|.+.+.++.     ++++  ++++.  +.....+++|||++|.+|.+..... ...+...+...+.+  ..+..+|.
T Consensus        47 ~~~e~~~l~~l~-----h~~i--~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~i~~~l~~lh~  118 (258)
T cd05578          47 VLNERRILQELN-----HPFL--VNLWYSFQDEENMYLVVDLLLGGDLRYHLSQK-VKFSEEQVKFWICEIVLALEYLHS  118 (258)
T ss_pred             HHHHHHHHHhCC-----CCCh--HHHHHhhcCCCeEEEEEeCCCCCCHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHh
Confidence            333444333331     1221  22211  2244579999999999998865332 23444444443322  33678899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      .|++|+|++|.||+++.  ++.++++|||.+..+.....       .....++..++.++...........|++++...+
T Consensus       119 ~~i~h~dl~~~nil~~~--~~~~~l~d~~~~~~~~~~~~-------~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l  189 (258)
T cd05578         119 KGIIHRDIKPDNILLDE--QGHVHITDFNIATKVTPDTL-------TTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTA  189 (258)
T ss_pred             CCeeccCCCHHHeEEcC--CCCEEEeecccccccCCCcc-------ccccCCChhhcCHHHHcccCCCCcccchhhHHHH
Confidence            99999999999999986  88999999999887765431       1113356677788887766677788999988766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       190 ~~l~  193 (258)
T cd05578         190 YECL  193 (258)
T ss_pred             HHHH
Confidence            5554

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.35  E-value=1.1e-11  Score=129.17  Aligned_cols=183  Identities=15%  Similarity=0.094  Sum_probs=117.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|..  +++.||+|+...+...                                           .-+
T Consensus        12 ~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~-------------------------------------------~~~   48 (263)
T cd05052          12 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-------------------------------------------VEE   48 (263)
T ss_pred             eecCCcccceEEEEEEecCCceEEEEEecCCchH-------------------------------------------HHH
Confidence            6799999999999998  5899999987432110                                           002


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      +.+|.+-+.++    .+..-+.+...+ ......+++|||++|++|.+...... ...+...+...+  +-..+..+|..
T Consensus        49 ~~~e~~~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~  123 (263)
T cd05052          49 FLKEAAVMKEI----KHPNLVQLLGVC-TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK  123 (263)
T ss_pred             HHHHHHHHHhC----CCCChhheEEEE-cCCCCcEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            33344433333    221122222222 23456789999999999988653221 223433333222  22336788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|.||++++  ++.++|+|||++..+........     ........+++++....+..++..|++++.-.+.
T Consensus       124 ~i~H~dlkp~nil~~~--~~~~kl~df~~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~  196 (263)
T cd05052         124 NFIHRDLAARNCLVGE--NHLVKVADFGLSRLMTGDTYTAH-----AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLW  196 (263)
T ss_pred             CEeecccCcceEEEcC--CCcEEeCCCccccccccceeecc-----CCCCCccccCCHHHhccCCCCchhHHHHHHHHHH
Confidence            9999999999999985  88999999999887754321110     0011123577788777777777889999987766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       197 el~  199 (263)
T cd05052         197 EIA  199 (263)
T ss_pred             HHH
Confidence            554

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.35  E-value=2.3e-12  Score=144.24  Aligned_cols=184  Identities=16%  Similarity=0.175  Sum_probs=132.7

Q ss_pred             ccccccceeEEEEEEeCCe-EEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGE-EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~-~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +-||+|-||.||.|.++|. +||||.++++.-                                           .+-+|
T Consensus       212 ~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m-------------------------------------------~~~~f  248 (468)
T KOG0197|consen  212 RELGSGQFGEVWLGKWNGSTKVAVKTIKEGSM-------------------------------------------SPEAF  248 (468)
T ss_pred             HHhcCCccceEEEEEEcCCCcccceEEecccc-------------------------------------------ChhHH
Confidence            3589999999999999876 999999977621                                           12267


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHHHHH--HHHHHhCC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVESY--LEQILSHG  454 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~ia~~li~~~--L~qi~~~G  454 (765)
                      ..||+-|.++++    ..-|..-.|. ......+|||||++-++|-++... ....++..++.....+.+  +..+-+++
T Consensus       249 ~~Ea~iMk~L~H----~~lV~l~gV~-~~~~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~  323 (468)
T KOG0197|consen  249 LREAQIMKKLRH----EKLVKLYGVC-TKQEPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKN  323 (468)
T ss_pred             HHHHHHHHhCcc----cCeEEEEEEE-ecCCceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCC
Confidence            789988887754    1212222221 222346999999999999997654 344456666666665554  67788999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|||+-.-||||++  ++.+++.||||++.+.++....-     .-..--+...+++.+..|..+-..|+.+|.-.+.+
T Consensus       324 ~IHRDLAARNiLV~~--~~~vKIsDFGLAr~~~d~~Y~~~-----~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E  396 (468)
T KOG0197|consen  324 YIHRDLAARNILVDE--DLVVKISDFGLARLIGDDEYTAS-----EGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWE  396 (468)
T ss_pred             ccchhhhhhheeecc--CceEEEcccccccccCCCceeec-----CCCCCCceecCHHHHhhCCcccccceeehhhhHHH
Confidence            999999999999996  88999999999996655432110     00112245678888999999999999999977766


Q ss_pred             HHH
Q 004254          535 FLN  537 (765)
Q Consensus       535 ~l~  537 (765)
                      ++.
T Consensus       397 ~fT  399 (468)
T KOG0197|consen  397 LFT  399 (468)
T ss_pred             Hhc
Confidence            543

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.34  E-value=2e-12  Score=135.22  Aligned_cols=186  Identities=20%  Similarity=0.262  Sum_probs=122.0

Q ss_pred             ccccccceeEEEEEEeC------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +-||.|+||.||+|++.      +.+|+||+..+.....                                         
T Consensus         5 ~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~-----------------------------------------   43 (259)
T PF07714_consen    5 KQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEE-----------------------------------------   43 (259)
T ss_dssp             EEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHH-----------------------------------------
T ss_pred             eEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccc-----------------------------------------
Confidence            45999999999999996      6899999985532211                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQ  449 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~li~--~~L~q  449 (765)
                      ..-+|.+|++.+.++     ++++|.-..-+........+||||+++++|.+..... ....+...+...+.+  ..+..
T Consensus        44 ~~~~~~~e~~~l~~l-----~h~ni~~~~g~~~~~~~~~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~  118 (259)
T PF07714_consen   44 EEEEFLNEIQILRKL-----RHPNIVKLYGFCIENEPLFLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSY  118 (259)
T ss_dssp             HHHHHHHHHHHHHTH-----SBTTBE-EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHH
T ss_pred             cceeeeecccccccc-----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            122455566555554     2233333333333455689999999999999876543 344565555554433  44788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..+++|+|++|.||+++.  ++.++|.|||+...........    ..........+++++...-+..+...|+++|.
T Consensus       119 Lh~~~iiH~~l~~~nill~~--~~~~Kl~~f~~~~~~~~~~~~~----~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG  192 (259)
T PF07714_consen  119 LHSNNIIHGNLSPSNILLDS--NGQVKLSDFGLSRPISEKSKYK----NDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFG  192 (259)
T ss_dssp             HHHTTEEEST-SGGGEEEET--TTEEEEESTTTGEETTTSSSEE----ESTTSESGGGGS-HHHHHHSEESHHHHHHHHH
T ss_pred             cccccccccccccccccccc--cccccccccccccccccccccc----cccccccccccccccccccccccccccccccc
Confidence            99999999999999999996  8899999999998873211100    00011234456678887777777788999998


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      -.+.+++
T Consensus       193 ~~l~ei~  199 (259)
T PF07714_consen  193 MLLYEIL  199 (259)
T ss_dssp             HHHHHHH
T ss_pred             ccccccc
Confidence            7766554

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.34  E-value=7.2e-12  Score=130.69  Aligned_cols=187  Identities=16%  Similarity=0.200  Sum_probs=117.6

Q ss_pred             ccccccceeEEEEEEe--CC---eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KG---EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G---~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||+|.+|.||+|++  +|   ..||+|..+++....                                         .
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------------~   48 (267)
T cd05066          10 KVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEK-----------------------------------------Q   48 (267)
T ss_pred             eeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHH-----------------------------------------H
Confidence            6799999999999987  23   379999875432111                                         0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  451 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~  451 (765)
                      .-+|.+|...+.++    .+..-+.+...+ ......+++|||++|++|.++........+...+...+  +...+..+|
T Consensus        49 ~~~~~~e~~~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH  123 (267)
T cd05066          49 RRDFLSEASIMGQF----DHPNIIHLEGVV-TKSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLS  123 (267)
T ss_pred             HHHHHHHHHHHHhC----CCCCcceEEEEE-ecCCccEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            11334454444443    222223333333 33456799999999999988764333334444444332  233467889


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..|++|+|+||.||+++.  ++.++++|||++..+........ ..  .-......++.++....+..++..|++++.-.
T Consensus       124 ~~~i~h~dlkp~nili~~--~~~~~l~dfg~~~~~~~~~~~~~-~~--~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~  198 (267)
T cd05066         124 DMGYVHRDLAARNILVNS--NLVCKVSDFGLSRVLEDDPEAAY-TT--RGGKIPIRWTAPEAIAYRKFTSASDVWSYGIV  198 (267)
T ss_pred             HCCEeehhhchhcEEECC--CCeEEeCCCCcccccccccceee-ec--CCCccceeecCHhHhccCccCchhhhHHHHHH
Confidence            999999999999999985  78999999999987754321110 00  00011234566777766667778899988866


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       199 l~ell  203 (267)
T cd05066         199 MWEVM  203 (267)
T ss_pred             HHHHh
Confidence            65543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.34  E-value=1e-11  Score=129.03  Aligned_cols=184  Identities=17%  Similarity=0.119  Sum_probs=115.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCC-chhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPG-LKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~-i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      +.||+|++|+||+|+.  +|+.|+||..... ..+                                        ....-
T Consensus         8 ~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~----------------------------------------~~~~~   47 (267)
T cd08229           8 KKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMD----------------------------------------AKARA   47 (267)
T ss_pred             hhhcccCCeEEEEEeecCCCceEEEEeeeehhhhh----------------------------------------HHHHH
Confidence            6799999999999997  6999999965220 000                                        00112


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhh-h--hcCCCHHHHHHHH--HHHHHHH
Q 004254          376 DYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSL-D--ELGVDRKRLGRYA--VESYLEQ  449 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l-~--~~g~d~~~ia~~l--i~~~L~q  449 (765)
                      ++.+|.+-+..+.    + +++ .+...+ ......+++|||++|++|.++... .  ...++...+...+  +-..+..
T Consensus        48 ~~~~e~~~l~~~~----h-~~i~~~~~~~-~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  121 (267)
T cd08229          48 DCIKEIDLLKQLN----H-PNVIKYYASF-IEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEH  121 (267)
T ss_pred             HHHHHHHHHHHcc----C-Cchhhhhhee-EeCCeEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHH
Confidence            3444544343332    2 222 222222 123457899999999999886532 1  1123333333332  2234678


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..|++|+|++|.||+++.  ++.++++|||++..+......  .    ....++..+++++.......+...|++++.
T Consensus       122 LH~~~i~H~dl~p~nili~~--~~~~~l~dfg~~~~~~~~~~~--~----~~~~~~~~~~ape~~~~~~~~~~~Dv~slG  193 (267)
T cd08229         122 MHSRRVMHRDIKPANVFITA--TGVVKLGDLGLGRFFSSKTTA--A----HSLVGTPYYMSPERIHENGYNFKSDIWSLG  193 (267)
T ss_pred             HHHCCeecCCCCHHHEEEcC--CCCEEECcchhhhccccCCcc--c----ccccCCcCccCHHHhcCCCccchhhHHHHH
Confidence            89999999999999999985  889999999998776543210  0    011244556677776655666778999998


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      -.+.+++
T Consensus       194 ~il~~l~  200 (267)
T cd08229         194 CLLYEMA  200 (267)
T ss_pred             HHHHHHH
Confidence            7665554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.34  E-value=7.8e-12  Score=131.81  Aligned_cols=119  Identities=13%  Similarity=0.039  Sum_probs=77.9

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecC-----CCcEEEEe
Q 004254          407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVN-----GGRLIFYD  479 (765)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~-----~g~l~LiD  479 (765)
                      .+..+|||||++|++|.++.......++.......+  +...+..+|..|++|+|+||.||++++..     .+.+++.|
T Consensus        88 ~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d  167 (274)
T cd05076          88 GSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSD  167 (274)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCcccCccceeeecC
Confidence            456799999999999988754333334444333322  22347888999999999999999997411     12489999


Q ss_pred             ecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHHHH
Q 004254          480 FGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       480 FGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~~~~  535 (765)
                      ||..........          ..++..+++++.... ....+..|++++.-.+.++
T Consensus       168 ~g~~~~~~~~~~----------~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el  214 (274)
T cd05076         168 PGVSFTALSREE----------RVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEI  214 (274)
T ss_pred             Cccccccccccc----------cccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHH
Confidence            998754432111          123445666765543 4456778999987665443

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.34  E-value=6.3e-12  Score=134.23  Aligned_cols=180  Identities=17%  Similarity=0.157  Sum_probs=114.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ..||.|++|+||+|..  +|+.||||+........                                    .+      .
T Consensus        27 ~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~------------------------------------~~------~   64 (297)
T cd06659          27 IKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQR------------------------------------RE------L   64 (297)
T ss_pred             hhcCCCCceeEEEEEEcCCCCEEEEEEEEecccch------------------------------------HH------H
Confidence            3699999999999998  68999999873321100                                    00      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      +.+|...+..+    . ++++ .+...+ ......+++|||++|++|.++...  ...+...+...+.  -..+..+|..
T Consensus        65 ~~~e~~~l~~l----~-hp~i~~~~~~~-~~~~~~~iv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~qi~~~L~~LH~~  136 (297)
T cd06659          65 LFNEVVIMRDY----Q-HQNVVEMYKSY-LVGEELWVLMEFLQGGALTDIVSQ--TRLNEEQIATVCESVLQALCYLHSQ  136 (297)
T ss_pred             HHHHHHHHHhC----C-CCchhhhhhhe-eeCCeEEEEEecCCCCCHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            22222222221    1 1221 111111 224567999999999999876432  2334444333322  2336788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|+||+++.  ++.++|+|||++..+.......      ....+...+++++....+..+...|++++.-.+.
T Consensus       137 ~ivH~dl~p~Nill~~--~~~~kL~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~  208 (297)
T cd06659         137 GVIHRDIKSDSILLTL--DGRVKLSDFGFCAQISKDVPKR------KSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVI  208 (297)
T ss_pred             CeecCCCCHHHeEEcc--CCcEEEeechhHhhcccccccc------cceecCccccCHHHHccCCCCchhhHHHHHHHHH
Confidence            9999999999999986  8899999999987665432211      0122455677777776666677789999887665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       209 el~  211 (297)
T cd06659         209 EMV  211 (297)
T ss_pred             HHH
Confidence            554

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.34  E-value=1.3e-11  Score=127.44  Aligned_cols=182  Identities=19%  Similarity=0.166  Sum_probs=116.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +++|.|++|.||+|..  +++.+++|+........                                    ..      .
T Consensus         9 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~------------------------------------~~------~   46 (262)
T cd06613           9 QRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDD------------------------------------FE------I   46 (262)
T ss_pred             EEecCCCceEEEEeEecCCCCEEEEEEEEcCchhh------------------------------------HH------H
Confidence            6899999999999998  58899999884321110                                    01      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~  453 (765)
                      +.+|...+.++    . ++++ .+... .......+++|||++|..|.++.......++...+...+.+  ..+..+|..
T Consensus        47 ~~~e~~~l~~~----~-h~~i~~~~~~-~~~~~~~~l~~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~  120 (262)
T cd06613          47 IQQEISMLKEC----R-HPNIVAYFGS-YLRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHET  120 (262)
T ss_pred             HHHHHHHHHhC----C-CCChhceEEE-EEeCCEEEEEEeCCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            22333333332    1 2222 22222 23345679999999999999875443234555444333322  336778999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC---CCCCCCCHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG---VLVPTGDTTAVRR  530 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG---~~~~~~D~~~l~~  530 (765)
                      |++|+|++|.||+++.  ++.++++|||++..+.......      ....++..++.+++....   ..+...|++++..
T Consensus       121 ~i~h~dl~p~ni~i~~--~~~~~l~d~g~~~~~~~~~~~~------~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~  192 (262)
T cd06613         121 GKIHRDIKGANILLTE--DGDVKLADFGVSAQLTATIAKR------KSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGI  192 (262)
T ss_pred             CceecCCChhhEEECC--CCCEEECccccchhhhhhhhcc------ccccCCccccCchhhcccccCCcCchhhhHHHHH
Confidence            9999999999999986  8899999999988765432110      011234456677776554   5566779988876


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       193 ~l~~~~  198 (262)
T cd06613         193 TAIELA  198 (262)
T ss_pred             HHHHHH
Confidence            665544

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.34  E-value=5.7e-12  Score=137.58  Aligned_cols=198  Identities=18%  Similarity=0.224  Sum_probs=119.7

Q ss_pred             HHHHhCCChhhhhcccC-cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 004254          281 VEEELGAPLDDVFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK  357 (765)
Q Consensus       281 ie~elG~~~eeiF~~fd-~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~  357 (765)
                      +++|++..+.++.+.|. .++||.|.+|.||+|..  +|+.||||+........                          
T Consensus         2 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--------------------------   55 (343)
T cd07880           2 YRQEVNKTIWEVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSE--------------------------   55 (343)
T ss_pred             hhhhhhhhhhccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccch--------------------------
Confidence            35566666666666664 37899999999999998  69999999874321100                          


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee-----ccCCCeEEEEeecCCCChhhhhhhhhcC
Q 004254          358 RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINRIQSLDELG  432 (765)
Q Consensus       358 ~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~-----e~st~~vLVMEyieG~~L~d~~~l~~~g  432 (765)
                              ....      .+.+|+..+.++.    +..-+.+..++.     ......++||||+ |..+.++...  ..
T Consensus        56 --------~~~~------~~~~E~~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~--~~  114 (343)
T cd07880          56 --------LFAK------RAYRELRLLKHMK----HENVIGLLDVFTPDLSLDRFHDFYLVMPFM-GTDLGKLMKH--EK  114 (343)
T ss_pred             --------HHHH------HHHHHHHHHHhcC----CCCccceeeeecCCccccccceEEEEEecC-CCCHHHHHhc--CC
Confidence                    0111      2233444444332    111122222221     1123458999999 6677776432  22


Q ss_pred             CCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHH
Q 004254          433 VDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVL  510 (765)
Q Consensus       433 ~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~  510 (765)
                      .+...+...+  +...+..+|..|++|+|++|.||+++.  ++.++++|||++..+......         ......+++
T Consensus       115 l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~--~~~~kl~dfg~~~~~~~~~~~---------~~~~~~y~a  183 (343)
T cd07880         115 LSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNE--DCELKILDFGLARQTDSEMTG---------YVVTRWYRA  183 (343)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcC--CCCEEEeecccccccccCccc---------cccCCcccC
Confidence            3333332222  223468889999999999999999985  789999999999876543210         112334455


Q ss_pred             HHHHHc-CCCCCCCCHHHHHHHHHHHH
Q 004254          511 QAMVQM-GVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       511 ~~l~~l-G~~~~~~D~~~l~~~~~~~l  536 (765)
                      ++.... ...+...|++++...+..++
T Consensus       184 PE~~~~~~~~~~~~Di~slG~ll~~l~  210 (343)
T cd07880         184 PEVILNWMHYTQTVDIWSVGCIMAEML  210 (343)
T ss_pred             HHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence            665543 23455678888876665543

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.34  E-value=4.6e-12  Score=139.26  Aligned_cols=176  Identities=11%  Similarity=0.054  Sum_probs=112.3

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||.|++|+||+|+.  +++.||+|+...+..                                              
T Consensus        71 ~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~~~----------------------------------------------  104 (357)
T PHA03209         71 IKTLTPGSEGRVFVATKPGQPDPVVLKIGQKGTT----------------------------------------------  104 (357)
T ss_pred             EEEecCCCCeEEEEEEECCCCceEEEEeCCcccc----------------------------------------------
Confidence            36899999999999999  578999997532210                                              


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                        ..|+..+.++    .+..-+.+...+ ......++||||+.| .+.+........++...+...+  +...+..+|..
T Consensus       105 --~~E~~~l~~l----~h~~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~  176 (357)
T PHA03209        105 --LIEAMLLQNV----NHPSVIRMKDTL-VSGAITCMVLPHYSS-DLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQ  176 (357)
T ss_pred             --HHHHHHHHhC----CCCCCcChhheE-EeCCeeEEEEEccCC-cHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence              1122222222    121112222222 223457899999976 4544432222334444333332  23447889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||.||+++.  ++.++|+|||++.........       .-..++..++++++...+......|++++.-.+.
T Consensus       177 ~ivHrDlkp~Nill~~--~~~~kl~DfG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~  247 (357)
T PHA03209        177 RIIHRDVKTENIFIND--VDQVCIGDLGAAQFPVVAPAF-------LGLAGTVETNAPEVLARDKYNSKADIWSAGIVLF  247 (357)
T ss_pred             CeecCCCCHHHEEECC--CCCEEEecCccccccccCccc-------ccccccccccCCeecCCCCCCchhhHHHHHHHHH
Confidence            9999999999999986  789999999998753322110       0123566777888776666778889999987776


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       248 ell  250 (357)
T PHA03209        248 EML  250 (357)
T ss_pred             HHH
Confidence            665

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.34  E-value=1.5e-11  Score=126.60  Aligned_cols=126  Identities=23%  Similarity=0.198  Sum_probs=82.0

Q ss_pred             CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceec
Q 004254          408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS  485 (765)
Q Consensus       408 t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~  485 (765)
                      ...+++|||++|++|.++..... ..+...+...+  +-..+..+|..|++|+|++|.||++++  ++.++++|||++..
T Consensus        66 ~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~--~~~~~l~dfg~~~~  142 (265)
T cd05579          66 KNLYLVMEYLPGGDLASLLENVG-SLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDS--NGHLKLTDFGLSKV  142 (265)
T ss_pred             cEEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcC--CCCEEEEecccchh
Confidence            45699999999999988653221 33433333322  223367889999999999999999986  88999999998775


Q ss_pred             cChhhHHH--HHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          486 ISPNIREG--LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       486 L~~~~r~~--l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ........  ..........++..++.++....+..+...|++++...+..++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~  195 (265)
T cd05579         143 GLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFL  195 (265)
T ss_pred             cccCcccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHH
Confidence            43321100  0000011123455667777776666666789999887665544

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.34  E-value=1.6e-11  Score=131.60  Aligned_cols=181  Identities=17%  Similarity=0.167  Sum_probs=116.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|..  +|..||+|..+......                                   ...      +
T Consensus         7 ~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~-----------------------------------~~~------~   45 (308)
T cd06615           7 GELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPA-----------------------------------IRN------Q   45 (308)
T ss_pred             eeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHH-----------------------------------HHH------H
Confidence            5799999999999998  58999999874332111                                   111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh-C
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS-H  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~-~  453 (765)
                      +.+|++.+.++    .+..-+.+...+ ......+++|||++|++|.++.... ..++...+....  +-..+..+|. .
T Consensus        46 ~~~E~~~l~~l----~h~~iv~~~~~~-~~~~~~~lv~ey~~~~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~  119 (308)
T cd06615          46 IIRELKVLHEC----NSPYIVGFYGAF-YSDGEISICMEHMDGGSLDQVLKKA-GRIPENILGKISIAVLRGLTYLREKH  119 (308)
T ss_pred             HHHHHHHHHhC----CCCCCCeEEEEE-eeCCEEEEEeeccCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence            33444444433    222222333333 2345679999999999999875422 223333222222  2233667786 6


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|+||++++  ++.++++|||+++.+.......        ..+...+++++.......+...|++++...+.
T Consensus       120 ~i~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~--------~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~  189 (308)
T cd06615         120 KIMHRDVKPSNILVNS--RGEIKLCDFGVSGQLIDSMANS--------FVGTRSYMSPERLQGTHYTVQSDIWSLGLSLV  189 (308)
T ss_pred             CEEECCCChHHEEEec--CCcEEEccCCCccccccccccc--------CCCCcCccChhHhcCCCCCccchHHHHHHHHH
Confidence            9999999999999986  7899999999987664432111        12345566777766666677789999987766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       190 ~l~  192 (308)
T cd06615         190 EMA  192 (308)
T ss_pred             HHH
Confidence            554

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.34  E-value=6.7e-12  Score=130.73  Aligned_cols=185  Identities=16%  Similarity=0.159  Sum_probs=115.4

Q ss_pred             ccccccceeEEEEEEe--CCe--EEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGE--EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~--~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      +.||+|++|.||+|++  +++  .||||.........                                 .       .-
T Consensus         5 ~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~---------------------------------~-------~~   44 (272)
T cd05075           5 KTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTR---------------------------------S-------EM   44 (272)
T ss_pred             cccCcccCceEEEeEEccCCCeeeEEEEecccCcCCH---------------------------------H-------HH
Confidence            4689999999999998  343  69999774432111                                 0       00


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeee--------ccCCCeEEEEeecCCCChhhhhhhhhc-----CCCHHHHHHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIFW--------EYTTPQILTMEYVPGIKINRIQSLDEL-----GVDRKRLGRY  441 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~--------e~st~~vLVMEyieG~~L~d~~~l~~~-----g~d~~~ia~~  441 (765)
                      -+|..|...+..+.    + ++  +++.+.        ......+++|||++|++|.+.......     .++...+...
T Consensus        45 ~~~~~E~~~l~~l~----h-~~--iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  117 (272)
T cd05075          45 EDFLSEAVCMKEFD----H-PN--VMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKF  117 (272)
T ss_pred             HHHHHHHHHHHhCC----C-CC--cceEEEEEccCCcccCCCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHH
Confidence            13445555555442    2 22  222221        112346899999999999876432211     1333333332


Q ss_pred             H--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004254          442 A--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  519 (765)
Q Consensus       442 l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~  519 (765)
                      +  +-..+..+|..|++|+|+||.||++++  ++.++++|||++..+........    .........++.++....+..
T Consensus       118 ~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~~~~~~~pe~~~~~~~  191 (272)
T cd05075         118 MTDIASGMEYLSSKSFIHRDLAARNCMLNE--NMNVCVADFGLSKKIYNGDYYRQ----GRIAKMPVKWIAIESLADRVY  191 (272)
T ss_pred             HHHHHHHHHHHHHCCeeccccchhheEEcC--CCCEEECCCCcccccCcccceec----CCcccCCcccCCHHHccCCCc
Confidence            2  223478889999999999999999985  78999999999887654321000    011123455677777766667


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 004254          520 VPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       520 ~~~~D~~~l~~~~~~~l  536 (765)
                      ++..|++++...+.+++
T Consensus       192 ~~~~Di~slG~il~el~  208 (272)
T cd05075         192 TTKSDVWSFGVTMWEIA  208 (272)
T ss_pred             ChHHHHHHHHHHHHHHH
Confidence            78889999887665543

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.34  E-value=1.2e-11  Score=131.76  Aligned_cols=187  Identities=14%  Similarity=0.073  Sum_probs=114.3

Q ss_pred             cccccccceeEEEEEEe---------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL---------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l---------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (765)
                      .++||.|++|.||+|+.         ++..||+|+.++.....                                   - 
T Consensus        20 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~-----------------------------------~-   63 (304)
T cd05101          20 GKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEK-----------------------------------D-   63 (304)
T ss_pred             cceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchH-----------------------------------H-
Confidence            37899999999999974         24579999875432111                                   0 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc---------------CC
Q 004254          369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL---------------GV  433 (765)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~---------------g~  433 (765)
                           .-++.+|...+..+.    ++++|.-..-+.......+++|||++|++|.++......               .+
T Consensus        64 -----~~~~~~E~~~l~~l~----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~  134 (304)
T cd05101          64 -----LSDLVSEMEMMKMIG----KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQM  134 (304)
T ss_pred             -----HHHHHHHHHHHHhhc----cCCCchheeEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccc
Confidence                 012333433333331    223322212122334567899999999999886543211               12


Q ss_pred             CHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHH
Q 004254          434 DRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ  511 (765)
Q Consensus       434 d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~  511 (765)
                      +...+....  +-..+..+|..|++|+|+||.||++++  ++.++|+|||.+..+........    .........++++
T Consensus       135 ~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nili~~--~~~~kl~D~g~~~~~~~~~~~~~----~~~~~~~~~y~aP  208 (304)
T cd05101         135 TFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVLVTE--NNVMKIADFGLARDVNNIDYYKK----TTNGRLPVKWMAP  208 (304)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCeeecccccceEEEcC--CCcEEECCCccceeccccccccc----ccCCCCCceeeCc
Confidence            222222222  233467889999999999999999986  78999999999987754322110    0001122346777


Q ss_pred             HHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          512 AMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       512 ~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +...-+..+...|++++...+.++
T Consensus       209 E~~~~~~~~~~~Di~slG~~l~el  232 (304)
T cd05101         209 EALFDRVYTHQSDVWSFGVLMWEI  232 (304)
T ss_pred             hhhccCCCCchhhHHHHHHHHHHH
Confidence            776666667778999988765544

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.34  E-value=1.4e-11  Score=129.15  Aligned_cols=184  Identities=18%  Similarity=0.172  Sum_probs=113.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ..||+|++|+||+|++  +|+.||+|+........                                  ...      -.
T Consensus         7 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~----------------------------------~~~------~~   46 (286)
T cd07847           7 SKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDP----------------------------------VIK------KI   46 (286)
T ss_pred             eeecccCCeEEEEEEECCCCcEEEEEEEeecccCc----------------------------------ccc------HH
Confidence            5689999999999999  58999999873221000                                  000      01


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|+..+..+.    +..-+.+...+ ......+++|||++|..+..+... ....+...+...+.+  ..+..+|..|
T Consensus        47 ~~~e~~~l~~~~----h~~i~~~~~~~-~~~~~~~~v~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~ql~~~l~~LH~~~  120 (286)
T cd07847          47 ALREIRMLKQLK----HPNLVNLIEVF-RRKRKLHLVFEYCDHTVLNELEKN-PRGVPEHLIKKIIWQTLQAVNFCHKHN  120 (286)
T ss_pred             HHHHHHHHHhCC----CCCEeeeeeEE-eeCCEEEEEEeccCccHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            334444443332    22222222222 334567999999999888776432 223444444333332  3467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|+||.||+++.  ++.++|+|||++..++......      ....+...+++++.... ...+...|++++...+.
T Consensus       121 i~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~  192 (286)
T cd07847         121 CIHRDVKPENILITK--QGQIKLCDFGFARILTGPGDDY------TDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFA  192 (286)
T ss_pred             ceecCCChhhEEEcC--CCcEEECccccceecCCCcccc------cCcccccccCCHHHHhCCCCcCchhhhHHHHHHHH
Confidence            999999999999985  7899999999998876543210      00112334455665543 23456789999887665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       193 ~l~  195 (286)
T cd07847         193 ELL  195 (286)
T ss_pred             HHH
Confidence            544

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.33  E-value=4.3e-12  Score=139.92  Aligned_cols=185  Identities=17%  Similarity=0.173  Sum_probs=109.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|+.  +|+.||||+........                             ..           .-.
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------~~-----------~~~   45 (372)
T cd07853           6 RPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNL-----------------------------VS-----------CKR   45 (372)
T ss_pred             ceeeeCCCEEEEEEEECCCCCEEEEEeccccccch-----------------------------HH-----------HHH
Confidence            6799999999999998  69999999763211100                             00           012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec----cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWE----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  450 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e----~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi  450 (765)
                      +.+|...+..+.    +..-+.+-.++..    .....+++|||+++ .+.+... ....++...+...+  +-..+..+
T Consensus        46 ~~~E~~~l~~l~----h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~-~~~~l~~~~~~~~~~qi~~aL~~L  119 (372)
T cd07853          46 VFRELKMLCFFK----HDNVLSALDILQPPHIDPFEEIYVVTELMQS-DLHKIIV-SPQPLSSDHVKVFLYQILRGLKYL  119 (372)
T ss_pred             HHHHHHHHHhCC----CCCcCCHhheecCCCccccceEEEEeecccc-CHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHH
Confidence            233444333332    1111112122211    11256999999986 4544321 12223433333222  23447889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVR  529 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~  529 (765)
                      |..|++|+|+||.||+++.  ++.++|+|||++............     -...+..++++++... .......|++++.
T Consensus       120 H~~~ivH~dlkp~Nili~~--~~~~kL~Dfg~a~~~~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~DiwslG  192 (372)
T cd07853         120 HSAGILHRDIKPGNLLVNS--NCVLKICDFGLARVEEPDESKHMT-----QEVVTQYYRAPEILMGSRHYTSAVDIWSVG  192 (372)
T ss_pred             HhCCeeCCCCChHHEEECC--CCCEEeccccceeecccCccccCC-----CCCcCCCcCCHHHHcCCCCCCcHHHHHhHH
Confidence            9999999999999999986  889999999999865433211100     0112445667776643 2345667999998


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       193 ~il~el~  199 (372)
T cd07853         193 CIFAELL  199 (372)
T ss_pred             HHHHHHH
Confidence            7766654

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.33  E-value=1.1e-11  Score=129.73  Aligned_cols=182  Identities=19%  Similarity=0.140  Sum_probs=119.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ..||+|++|.||+|+.  +|+.||+|+......                              ..           ..-+
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~------------------------------~~-----------~~~~   45 (274)
T cd06609           7 ECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEA------------------------------ED-----------EIED   45 (274)
T ss_pred             hhhcCCCCeEEEEEEECCCCeEEEEEEeecccc------------------------------ch-----------HHHH
Confidence            5799999999999998  689999998732110                              00           0012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|.+.+..+.     ++++.-+..+.......++||||++|++|.+.....  ..+...+...+.+  ..+..+|..|
T Consensus        46 ~~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~ql~~~l~~lh~~~  118 (274)
T cd06609          46 IQQEIQFLSQCR-----SPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKPG--KLDETYIAFILREVLLGLEYLHEEG  118 (274)
T ss_pred             HHHHHHHHHHcC-----CCCeeeeeEEEEECCeEEEEEEeeCCCcHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            334444444332     233332222333346679999999999998875432  3344444333322  3356789999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|++|.||++++  ++.++++|||++..+........      ...+...++.++....+..++..|++++...+.+
T Consensus       119 i~h~dl~p~ni~i~~--~~~~~l~d~g~~~~~~~~~~~~~------~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~  190 (274)
T cd06609         119 KIHRDIKAANILLSE--EGDVKLADFGVSGQLTSTMSKRN------TFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIE  190 (274)
T ss_pred             cccCCCCHHHEEECC--CCCEEEcccccceeecccccccc------cccCCccccChhhhccCCCCchhhHHHHHHHHHH
Confidence            999999999999986  88999999999988865421110      0123445677777776667788999999877665


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       191 l~  192 (274)
T cd06609         191 LA  192 (274)
T ss_pred             HH
Confidence            54

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.33  E-value=9.1e-12  Score=132.92  Aligned_cols=181  Identities=17%  Similarity=0.158  Sum_probs=117.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.|+||...-.....                                    ..      .
T Consensus        25 ~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~------------------------------------~~------~   62 (296)
T cd06655          25 EKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPK------------------------------------KE------L   62 (296)
T ss_pred             EEEecCCCeEEEEEEEcCCCcEEEEEEEecccCch------------------------------------HH------H
Confidence            5799999999999997  69999999762110000                                    00      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|...+..+     +++++.-+.-+.......+++|||++|++|.++...  ...+...+...+..  ..+..+|..|
T Consensus        63 ~~~e~~~l~~l-----~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~l~~~~~~~i~~~l~~al~~LH~~~  135 (296)
T cd06655          63 IINEILVMKEL-----KNPNIVNFLDSFLVGDELFVVMEYLAGGSLTDVVTE--TCMDEAQIAAVCRECLQALEFLHANQ  135 (296)
T ss_pred             HHHHHHHHHhc-----CCCceeeeeeeEecCceEEEEEEecCCCcHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            23333333332     123332222222234567999999999999886532  23444444433322  3467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|++|.||+++.  ++.++++|||++..+.+.....      ....+...++.++...-+..+...|++++...+..
T Consensus       136 i~H~dL~p~Nili~~--~~~~kl~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~  207 (296)
T cd06655         136 VIHRDIKSDNVLLGM--DGSVKLTDFGFCAQITPEQSKR------STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIE  207 (296)
T ss_pred             cccCCCCHHHEEECC--CCCEEEccCccchhcccccccC------CCcCCCccccCcchhcCCCCCchhhHHHHHHHHHH
Confidence            999999999999986  8899999999988776543211      01124456677777766666777899998876655


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       208 ll  209 (296)
T cd06655         208 MV  209 (296)
T ss_pred             HH
Confidence            54

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.33  E-value=1.8e-11  Score=127.60  Aligned_cols=183  Identities=16%  Similarity=0.108  Sum_probs=107.8

Q ss_pred             cccccceeEEEEEEe-C---CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL-K---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       300 PIgsaSiGQVhrA~l-~---G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .||.|+||+||+|.. +   ...|++|..+......                                         .+.
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~-----------------------------------------~~~   40 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPD-----------------------------------------EQL   40 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChH-----------------------------------------HHH
Confidence            489999999999986 3   4578888653322111                                         112


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceee--eccCCCeEEEEeecCCCChhhhhhhhhcC----CCHHHHHHHH--HHHHH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDELG----VDRKRLGRYA--VESYL  447 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy--~e~st~~vLVMEyieG~~L~d~~~l~~~g----~d~~~ia~~l--i~~~L  447 (765)
                      .|.+|+..+..+    . +++|  .+.+  .......+++|||++|++|.++.......    .+...+....  +-..+
T Consensus        41 ~~~~e~~~~~~l----~-h~ni--i~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l  113 (269)
T cd05042          41 LFLQEVQPYREL----N-HPNV--LQCLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGL  113 (269)
T ss_pred             HHHHHHHHHHhC----C-CCCc--ceEEEEECCCCceEEEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHH
Confidence            344454444332    2 2332  2222  22345679999999999998865322111    1222222221  22346


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-------CCCC
Q 004254          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-------GVLV  520 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-------G~~~  520 (765)
                      ..+|..|++|+|+||.||+++.  +++++++|||++...........    .........++++++...       ...+
T Consensus       114 ~~lH~~~ivH~dlkp~Nill~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~~~~  187 (269)
T cd05042         114 LWLHQADFIHSDLALRNCQLTA--DLSVKIGDYGLALEQYPEDYYIT----KDCHAVPLRWLAPELVEIRGQDLLPKDQT  187 (269)
T ss_pred             HHHHhcCEecccccHhheEecC--CCcEEEeccccccccccchheec----cCCCCCcccccCHHHHhhccccccccccc
Confidence            7899999999999999999986  88999999999865433211000    000111234566666542       1234


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004254          521 PTGDTTAVRRTAQFFL  536 (765)
Q Consensus       521 ~~~D~~~l~~~~~~~l  536 (765)
                      ...|++++.-.+.+++
T Consensus       188 ~~~DiwslG~~l~el~  203 (269)
T cd05042         188 KKSNIWSLGVTMWELF  203 (269)
T ss_pred             hhhHHHHHHHHHHHHH
Confidence            5678888876655543

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.33  E-value=9e-12  Score=132.32  Aligned_cols=185  Identities=19%  Similarity=0.167  Sum_probs=116.2

Q ss_pred             ccccccceeEEEEEEe------------------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccch
Q 004254          299 EPIAAASLGQVHRARL------------------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDW  360 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l------------------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~  360 (765)
                      +.||.|++|.||+|..                  ++..||||+.+......                             
T Consensus        11 ~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~-----------------------------   61 (296)
T cd05095          11 EKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKN-----------------------------   61 (296)
T ss_pred             eeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHH-----------------------------
Confidence            5799999999999853                  13468999875432111                             


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceee--eccCCCeEEEEeecCCCChhhhhhhhhcC------
Q 004254          361 VAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDELG------  432 (765)
Q Consensus       361 ~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy--~e~st~~vLVMEyieG~~L~d~~~l~~~g------  432 (765)
                                  ..-+|.+|++.+..+.     ++++  ++++  .......+++|||++|++|.++.......      
T Consensus        62 ------------~~~~~~~E~~~l~~l~-----~~~i--~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~  122 (296)
T cd05095          62 ------------ARNDFLKEIKIMSRLK-----DPNI--IRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKA  122 (296)
T ss_pred             ------------HHHHHHHHHHHHHhCC-----CCCc--ceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccc
Confidence                        0124455555554442     2322  2332  23345679999999999998865322111      


Q ss_pred             ----CCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCH
Q 004254          433 ----VDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDA  506 (765)
Q Consensus       433 ----~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~  506 (765)
                          .+...+...+  +...+..+|..|++|+|++|.||++++  ++.++++|||++..+........    .+......
T Consensus       123 ~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nili~~--~~~~~l~dfg~~~~~~~~~~~~~----~~~~~~~~  196 (296)
T cd05095         123 DVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCLVGK--NYTIKIADFGMSRNLYSGDYYRI----QGRAVLPI  196 (296)
T ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHCCeecccCChheEEEcC--CCCEEeccCcccccccCCcceec----cCcCcCcc
Confidence                1222233322  223468899999999999999999986  78999999999887643321100    00011123


Q ss_pred             HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004254          507 DKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       507 ~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l~  537 (765)
                      .++.++....+..+...|++++.-.+.+++.
T Consensus       197 ~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~  227 (296)
T cd05095         197 RWMSWESILLGKFTTASDVWAFGVTLWEILT  227 (296)
T ss_pred             ccCCHHHHhcCCccchhhhhHHHHHHHHHHH
Confidence            4556666666777888999999877766653

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.33  E-value=7.9e-12  Score=135.42  Aligned_cols=182  Identities=19%  Similarity=0.224  Sum_probs=119.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.+|.|.+|.|-+|+.  .|+.||||..|.+--+.                         ..|++.              
T Consensus        59 etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkd-------------------------eqDlvh--------------   99 (668)
T KOG0611|consen   59 ETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKD-------------------------EQDLVH--------------   99 (668)
T ss_pred             HHhcCCcccceeehhhccCCcEeehhhhhhhhccc-------------------------HHHHHH--------------
Confidence            5799999999999998  59999999765432111                         012221              


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH---HHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA---VESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l---i~~~L~qi~~~  453 (765)
                      .++|.+-|..+    .+..-|.+-.|+ +-..+.||||||..|+.|.|+..-.+ .+ .++-++..   +-...+++|.+
T Consensus       100 IRREIeIMSsL----NHPhII~IyEVF-ENkdKIvivMEYaS~GeLYDYiSer~-~L-sErEaRhfFRQIvSAVhYCHkn  172 (668)
T KOG0611|consen  100 IRREIEIMSSL----NHPHIIQIYEVF-ENKDKIVIVMEYASGGELYDYISERG-SL-SEREARHFFRQIVSAVHYCHKN  172 (668)
T ss_pred             HHHHHHHHhhc----CCCceeehhhhh-cCCceEEEEEEecCCccHHHHHHHhc-cc-cHHHHHHHHHHHHHHHHHHhhc
Confidence            12233333222    222223444444 34677899999999999999764322 11 12222222   23346777899


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~  532 (765)
                      +++|+|+|-.|||++.  ++.+++.|||+...+.+   ..|.+.|+    +.+-++.+++..- -+..|.+|-+++...+
T Consensus       173 rVvHRDLKLENILLD~--N~NiKIADFGLSNly~~---~kfLqTFC----GSPLYASPEIvNG~PY~GPEVDsWsLGvLL  243 (668)
T KOG0611|consen  173 RVVHRDLKLENILLDQ--NNNIKIADFGLSNLYAD---KKFLQTFC----GSPLYASPEIVNGTPYKGPEVDSWSLGVLL  243 (668)
T ss_pred             cceecccchhheeecC--CCCeeeeccchhhhhcc---ccHHHHhc----CCcccCCccccCCCCCCCCccchhhHHHHH
Confidence            9999999999999997  88999999999887755   34555544    4677777777654 2345678888887655


Q ss_pred             HHH
Q 004254          533 QFF  535 (765)
Q Consensus       533 ~~~  535 (765)
                      +-+
T Consensus       244 YtL  246 (668)
T KOG0611|consen  244 YTL  246 (668)
T ss_pred             HHH
Confidence            544

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.33  E-value=1.4e-11  Score=129.43  Aligned_cols=185  Identities=13%  Similarity=0.141  Sum_probs=115.4

Q ss_pred             ccccccceeEEEEEEeC-------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||.|++|.||+|+..       +..||||+.+......                                   ..+  
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~~--   53 (283)
T cd05091          11 EELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGP-----------------------------------LRE--   53 (283)
T ss_pred             HHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHH-----------------------------------HHH--
Confidence            46899999999999872       4789999874322111                                   111  


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDR  435 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~  435 (765)
                          .+..|..-+..    +.+ ++| .+...+ ......++++||+++..|.++.....               ...+.
T Consensus        54 ----~~~~e~~~~~~----l~h-~~iv~~~~~~-~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  123 (283)
T cd05091          54 ----EFKHEAMMRSR----LQH-PNIVCLLGVV-TKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEP  123 (283)
T ss_pred             ----HHHHHHHHHhc----CCC-CCcCeEEEEE-cCCCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCH
Confidence                12233322222    222 222 222222 22345789999999999888653221               01222


Q ss_pred             HHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004254          436 KRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (765)
Q Consensus       436 ~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l  513 (765)
                      ..+...+  +-..+..+|..|++|+|+||.||++.+  ++.++|+|||++..+........    .+.....+.+++++.
T Consensus       124 ~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~  197 (283)
T cd05091         124 ADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFD--KLNVKISDLGLFREVYAADYYKL----MGNSLLPIRWMSPEA  197 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCccccccchhheEecC--CCceEecccccccccccchheee----ccCccCCccccCHHH
Confidence            2222222  223368889999999999999999986  78999999999887654321110    011112356788888


Q ss_pred             HHcCCCCCCCCHHHHHHHHHHHH
Q 004254          514 VQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       514 ~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ...+..++..|++++...+.+++
T Consensus       198 ~~~~~~~~~~Dv~slG~~l~el~  220 (283)
T cd05091         198 IMYGKFSIDSDIWSYGVVLWEVF  220 (283)
T ss_pred             HhcCCCCcchhHHHHHHHHHHHH
Confidence            87777888899999987766554

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.33  E-value=4e-12  Score=141.59  Aligned_cols=177  Identities=11%  Similarity=0.095  Sum_probs=113.8

Q ss_pred             ccccccceeEEEEEEe----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      ..||.|++|.||+|..    .+..||||+...+.                                              
T Consensus        98 ~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~~----------------------------------------------  131 (392)
T PHA03207         98 SSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGGK----------------------------------------------  131 (392)
T ss_pred             EeecCCCCeEEEEEEEcCCccceeEEEEeccccc----------------------------------------------
Confidence            6799999999999986    25789999763321                                              


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQIL  451 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~  451 (765)
                       ++.+|.+.+.++.    + ++| .+-..+ ......+++||++.| .+.+... ....+....+...+.  -..+..+|
T Consensus       132 -~~~~E~~il~~l~----h-~~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~l~-~~~~l~~~~~~~i~~ql~~aL~~LH  202 (392)
T PHA03207        132 -TPGREIDILKTIS----H-RAIINLIHAY-RWKSTVCMVMPKYKC-DLFTYVD-RSGPLPLEQAITIQRRLLEALAYLH  202 (392)
T ss_pred             -cHHHHHHHHHhcC----C-CCccceeeeE-eeCCEEEEEehhcCC-CHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHH
Confidence             0112333333332    2 222 222222 334567999999976 4444331 122234333333322  23478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..|++|+|+||.||+++.  ++.++|+|||++..+.......-.    ....++..++++++...+......|++++...
T Consensus       203 ~~givHrDlkp~Nill~~--~~~~~l~DfG~a~~~~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvi  276 (392)
T PHA03207        203 GRGIIHRDVKTENIFLDE--PENAVLGDFGAACKLDAHPDTPQC----YGWSGTLETNSPELLALDPYCAKTDIWSAGLV  276 (392)
T ss_pred             HCCccccCCCHHHEEEcC--CCCEEEccCccccccCcccccccc----cccccccCccCHhHhcCCCCCchhhHHHHHHH
Confidence            999999999999999986  889999999998876543211100    01235677888888887777788999999887


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       277 l~el~  281 (392)
T PHA03207        277 LFEMS  281 (392)
T ss_pred             HHHHH
Confidence            76654

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.33  E-value=1.2e-11  Score=130.42  Aligned_cols=181  Identities=19%  Similarity=0.233  Sum_probs=116.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|..  +|+.||+|+...+....                                   ...      +
T Consensus        11 ~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~-----------------------------------~~~------~   49 (284)
T cd06620          11 SDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSS-----------------------------------VRK------Q   49 (284)
T ss_pred             HHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcch-----------------------------------HHH------H
Confidence            5799999999999998  59999999874432111                                   111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh-C
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS-H  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~-~  453 (765)
                      +.+|...+..+     +++++.-..-+.......+|||||++|++|.++.... ..+....+....  +...+..+|. +
T Consensus        50 ~~~E~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~  123 (284)
T cd06620          50 ILRELQIMHEC-----RSPYIVSFYGAFLNENNICMCMEFMDCGSLDRIYKKG-GPIPVEILGKIAVAVVEGLTYLYNVH  123 (284)
T ss_pred             HHHHHHHHHHc-----CCCCcceEeeeEecCCEEEEEEecCCCCCHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            23344333333     2233333333334456789999999999998864321 122322222222  2223566775 6


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|.||++++  +++++++|||++..+......        ...+...++.++....+..+...|.+++...+.
T Consensus       124 ~i~H~dl~p~nil~~~--~~~~~l~d~gl~~~~~~~~~~--------~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~  193 (284)
T cd06620         124 RIMHRDIKPSNILVNS--RGQIKLCDFGVSGELINSIAD--------TFVGTSTYMSPERIQGGKYTVKSDVWSLGISII  193 (284)
T ss_pred             CeeccCCCHHHEEECC--CCcEEEccCCcccchhhhccC--------ccccCcccCCHHHHccCCCCccchHHHHHHHHH
Confidence            9999999999999985  789999999998765332211        123455666777776666777889999887665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       194 ~l~  196 (284)
T cd06620         194 ELA  196 (284)
T ss_pred             HHH
Confidence            554

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.33  E-value=1.2e-11  Score=132.38  Aligned_cols=190  Identities=17%  Similarity=0.170  Sum_probs=118.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||...+.....                                 ...      .-.
T Consensus         7 ~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~------~~~   47 (316)
T cd05574           7 KLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIK---------------------------------RNK------VKR   47 (316)
T ss_pred             eeecCCccEEEEEEEEcCCCcEEEEEEEeccccch---------------------------------HHH------HHH
Confidence            5799999999999999  48999999885431110                                 000      012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQIL  451 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~l--i~~~L~qi~  451 (765)
                      +..|...+..+.     +++  +++++.  +.....+++|||++|++|.++..... ..++...+...+  +...+..+|
T Consensus        48 ~~~e~~~l~~l~-----~~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH  120 (316)
T cd05574          48 VLTEQEILATLD-----HPF--LPTLYASFQTETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLH  120 (316)
T ss_pred             HHHHHHHHHhCC-----CCC--chhheeeeecCCEEEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence            344444444432     222  333332  33456799999999999988754221 223433332222  233467789


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHH----------------HHH-------HHhhcCHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE----------------AFY-------GIYEKDADK  508 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~----------------l~~-------ai~~~D~~~  508 (765)
                      ..|++|+|+||.||+++.  ++.++|.|||++...+.........                ...       ....++..+
T Consensus       121 ~~~i~H~dlkp~Nili~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y  198 (316)
T cd05574         121 LLGIVYRDLKPENILLHE--SGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEY  198 (316)
T ss_pred             HCCeeccCCChHHeEEcC--CCCEEEeecchhhcccccccccccccccccccccccccchhhhcccccCCCCCCcCccCC
Confidence            999999999999999986  7899999999988765432111000                000       001134456


Q ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          509 VLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       509 i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +.+++..-+..+...|++++...+.+++
T Consensus       199 ~aPE~~~~~~~~~~~Di~slG~ll~~l~  226 (316)
T cd05574         199 IAPEVISGDGHGSAVDWWTLGILLYEML  226 (316)
T ss_pred             cCHHHHcCCCCCchHHHHHHHHHHHHHh
Confidence            7777776666677789999887666554

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=99.33  E-value=6.4e-11  Score=123.34  Aligned_cols=184  Identities=21%  Similarity=0.219  Sum_probs=127.6

Q ss_pred             cccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       300 PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +|.+|--|.||+|.. ++..|||||.+....+--..+        .+++. .|.+...+.+...++..+.         +
T Consensus        55 ~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~~--------~Yi~g-d~Rf~~~~~~rr~lv~~W~---------~  116 (268)
T COG1718          55 CISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRIR--------RYIQG-DPRFRNSRSNRRKLVFAWA---------R  116 (268)
T ss_pred             eecCCcceEEEeeccCCCceEEEEEEehhhhhhhhHH--------HHHhc-ChhhhcCCCCHHHHHHHHH---------H
Confidence            899999999999998 799999999988765432221        22211 1112222334444444433         5


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCC---CHHHHHHHHHHHHHHHHHhCCc
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGV---DRKRLGRYAVESYLEQILSHGF  455 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~---d~~~ia~~li~~~L~qi~~~Gf  455 (765)
                      .|.+|+.++.+     .+|.+|+++.  .-++||+||||.... .....+...+.   +...+...+++.+-.+....|+
T Consensus       117 kEf~NL~R~~e-----AGVrvP~Pi~--~~~nVLvMEfIg~~g-~pAP~LkDv~~e~~e~~~~~~~~v~~~~~l~~~a~L  188 (268)
T COG1718         117 KEFRNLKRAYE-----AGVRVPEPIA--FRNNVLVMEFIGDDG-LPAPRLKDVPLELEEAEGLYEDVVEYMRRLYKEAGL  188 (268)
T ss_pred             HHHHHHHHHHH-----cCCCCCCcee--ecCCeEEEEeccCCC-CCCCCcccCCcCchhHHHHHHHHHHHHHHHHHhcCc
Confidence            78899999876     5699999994  678899999996541 11111222222   2344445555555555667999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  519 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~  519 (765)
                      +|+|+..-|||+.   ++.+++||||.+..++...-..       ++.+|...+...+-..|+-
T Consensus       189 VHgDLSEyNiL~~---~~~p~iID~~QaV~~~hp~a~e-------~L~RDv~Ni~~fF~r~gv~  242 (268)
T COG1718         189 VHGDLSEYNILVH---DGEPYIIDVSQAVTIDHPNAFE-------FLERDVRNIARFFRRKGVE  242 (268)
T ss_pred             ccccchhhheEEE---CCeEEEEECccccccCCCchHH-------HHHHHHHHHHHHHHHcCCC
Confidence            9999999999997   6899999999999888665433       3567999999999888863

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.33  E-value=2.1e-11  Score=124.39  Aligned_cols=186  Identities=17%  Similarity=0.100  Sum_probs=121.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++||.|++|.||+|..  +|+.|++|+.+.....                                  ....+      .
T Consensus         6 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~----------------------------------~~~~~------~   45 (260)
T cd06606           6 ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDS----------------------------------EEELE------A   45 (260)
T ss_pred             eEeeecCceEEEEEEECCCCcEEEEEEeeccccc----------------------------------hHHHH------H
Confidence            6899999999999999  4999999987443211                                  00011      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC--CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s--t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~  452 (765)
                      +.+|...+.++.     ++++.-..-.....  ...+++|||++|.+|.++..... .++...+...+..  ..+..+|.
T Consensus        46 ~~~e~~~l~~l~-----~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~  119 (260)
T cd06606          46 LEREIRILSSLQ-----HPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFG-KLPEPVIRKYTRQILEGLAYLHS  119 (260)
T ss_pred             HHHHHHHHHHcC-----CCCEeeEEEEEecCCCCeEEEEEEecCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            233333333332     23322222222223  56799999999999998754322 3444444333322  33678899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      .|++|+|++|.||++++  ++.++|+|||............    ......++..++.++....+......|++++...+
T Consensus       120 ~~~~h~dl~p~ni~i~~--~~~~~l~d~~~~~~~~~~~~~~----~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il  193 (260)
T cd06606         120 NGIVHRDIKGANILVDS--DGVVKLADFGCAKRLGDIETGE----GTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTV  193 (260)
T ss_pred             CCccccCCCHHHEEEcC--CCCEEEcccccEEecccccccc----cccCCCCCccccCHhhhcCCCCCchhhHHHHHHHH
Confidence            99999999999999986  7899999999998887653210    01112355667778877766677788999988776


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      ..++
T Consensus       194 ~~l~  197 (260)
T cd06606         194 IEMA  197 (260)
T ss_pred             HHHH
Confidence            6554

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.33  E-value=1.4e-11  Score=129.43  Aligned_cols=182  Identities=17%  Similarity=0.119  Sum_probs=116.0

Q ss_pred             ccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          301 IAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       301 IgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      ||.|++|.||+|..  +|+.||+|+........                                       -..+-.+.
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~---------------------------------------~~~~~~~~   41 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKK---------------------------------------RKGEQMAL   41 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhh---------------------------------------hhhhHHHH
Confidence            68999999999987  69999999874321000                                       00122334


Q ss_pred             HHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          379 QEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      .|...+.++.     ++++ .+...+ +.....+++|||++|++|.+...... ..+....+...+  +-..+..+|..|
T Consensus        42 ~e~~~l~~l~-----~~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~  115 (277)
T cd05577          42 NEKKILEKVS-----SRFIVSLAYAF-ETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRR  115 (277)
T ss_pred             HHHHHHHhCC-----CCCEeeeeeEE-ecCCeEEEEEecCCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            4555555442     2322 222233 33456799999999999987653222 134433333222  223467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|++|.||++++  ++.++|+|||.+..+......       ....+...++.++...-+..+...|++++...+.+
T Consensus       116 i~H~di~p~Nil~~~--~~~~~l~dfg~~~~~~~~~~~-------~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~  186 (277)
T cd05577         116 IVYRDLKPENVLLDD--HGNVRISDLGLAVELKGGKKI-------KGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYE  186 (277)
T ss_pred             cccCCCCHHHEEECC--CCCEEEccCcchhhhccCCcc-------ccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHH
Confidence            999999999999986  889999999988766432110       01123445667777666666677899998866555


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       187 l~  188 (277)
T cd05577         187 MI  188 (277)
T ss_pred             Hh
Confidence            43

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.33  E-value=7.1e-12  Score=133.43  Aligned_cols=183  Identities=13%  Similarity=0.075  Sum_probs=110.2

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||.|++|.||+|+.  +|+.||+|..+.......                                         ..
T Consensus        11 ~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~-----------------------------------------~~   49 (301)
T cd07873          11 LDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGA-----------------------------------------PC   49 (301)
T ss_pred             eeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCc-----------------------------------------hh
Confidence            36899999999999998  589999998743321110                                         00


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004254          376 DYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~  452 (765)
                      ++.+|...+.++.    + ++| .+..++ ......++||||++| .+.+.........+...+...+  +-..+..+|.
T Consensus        50 ~~~~E~~~l~~l~----h-~nI~~~~~~~-~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~  122 (301)
T cd07873          50 TAIREVSLLKDLK----H-ANIVTLHDII-HTEKSLTLVFEYLDK-DLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHR  122 (301)
T ss_pred             HHHHHHHHHHhcC----C-CCcceEEEEE-ecCCeEEEEEecccc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            1223444343332    2 322 222222 234557999999986 5655433222234444443333  2334788899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRT  531 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~  531 (765)
                      .|++|+|+||+||+++.  ++.++++|||++..........-      .......++.++.... ...+...|++++...
T Consensus       123 ~~i~H~dlkp~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~~------~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~  194 (301)
T cd07873         123 RKVLHRDLKPQNLLINE--RGELKLADFGLARAKSIPTKTYS------NEVVTLWYRPPDILLGSTDYSTQIDMWGVGCI  194 (301)
T ss_pred             CCeeCCCCCHHHEEECC--CCcEEECcCcchhccCCCCCccc------ccceeecccCcHHHhCCCCCccHHHHHHHHHH
Confidence            99999999999999986  88999999999876543221100      0012344555665432 224456788888776


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       195 l~el~  199 (301)
T cd07873         195 FYEMS  199 (301)
T ss_pred             HHHHH
Confidence            65554

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.33  E-value=9.5e-12  Score=129.98  Aligned_cols=185  Identities=17%  Similarity=0.171  Sum_probs=116.9

Q ss_pred             ccccccceeEEEEEEeC------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +.||.|++|.||+|+++      |+.||||+.++....                                         .
T Consensus        10 ~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~-----------------------------------------~   48 (284)
T cd05038          10 KQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE-----------------------------------------Q   48 (284)
T ss_pred             eeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch-----------------------------------------H
Confidence            67999999999999972      689999988553221                                         0


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceee--ecc--CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIF--WEY--TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESY  446 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy--~e~--st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~  446 (765)
                      .+-+|.+|.+.+..+.     +++  +++.+  ...  ....+++|||++|++|.++........+...+...+.  -..
T Consensus        49 ~~~~~~~ei~~l~~l~-----~~~--i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~a  121 (284)
T cd05038          49 HRSDFEREIEILRTLD-----HEN--IVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKG  121 (284)
T ss_pred             HHHHHHHHHHHHHhCC-----CCC--hheEEeeeecCCCCceEEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHH
Confidence            1123444444333331     122  22222  122  2346999999999999887643332344444333322  234


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004254          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (765)
Q Consensus       447 L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~  526 (765)
                      +..+|..|++|+|++|.||+++.  ++.++|.|||++..+.........   .........++.++....+......|++
T Consensus       122 L~~lH~~~i~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~~---~~~~~~~~~~~~Pe~~~~~~~~~~~Di~  196 (284)
T cd05038         122 MDYLGSQRYIHRDLAARNILVES--EDLVKISDFGLAKVLPEDKDYYYV---KEPGESPIFWYAPECLRTSKFSSASDVW  196 (284)
T ss_pred             HHHHHhCCeecCCCCHHhEEEcC--CCCEEEcccccccccccCCcceec---cCCCCCcccccCcHHHccCCCCcccchH
Confidence            67889999999999999999986  799999999999987633211000   0001122234556666556667778999


Q ss_pred             HHHHHHHHHH
Q 004254          527 AVRRTAQFFL  536 (765)
Q Consensus       527 ~l~~~~~~~l  536 (765)
                      ++...+.+++
T Consensus       197 slG~~l~el~  206 (284)
T cd05038         197 SFGVTLYELF  206 (284)
T ss_pred             HHhhhhheee
Confidence            9887666554

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.32  E-value=2.2e-11  Score=126.35  Aligned_cols=181  Identities=16%  Similarity=0.143  Sum_probs=117.6

Q ss_pred             ccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          301 IAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       301 IgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      ||.|++|.||+|+.  +|+.||||+..+.....                                 .+      .+-.+.
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~---------------------------------~~------~~~~~~   41 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVE---------------------------------TG------QQEHIF   41 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchh---------------------------------hh------HHHHHH
Confidence            68999999999999  38999999874321100                                 00      112344


Q ss_pred             HHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004254          379 QEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~Gf  455 (765)
                      +|...+.++.    + +++ .+.. +.......+++|||++|++|.+..... .......+...+  +-..+..+|..|+
T Consensus        42 ~e~~~l~~l~----h-~~i~~~~~-~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~i~~~l~~lH~~~~  114 (262)
T cd05572          42 SEKEILEECN----H-PFIVKLYR-TFKDKKYIYMLMEYCLGGELWTILRDR-GLFDEYTARFYIACVVLAFEYLHNRGI  114 (262)
T ss_pred             HHHHHHHhCC----C-CCEeeeee-eEEcCCccEEEEecCCCCcHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHhhCCc
Confidence            5554443332    2 322 2222 223345679999999999998865322 123333333222  3344788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|++|.||+++.  ++.++|+|||.+..+.......       ...++..++.++.......+...|++++.-.+.++
T Consensus       115 ~h~dl~~~nilv~~--~~~~~l~df~~~~~~~~~~~~~-------~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l  185 (262)
T cd05572         115 IYRDLKPENLLLDS--NGYVKLVDFGFAKKLKSGQKTW-------TFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYEL  185 (262)
T ss_pred             ccCCCCHHHEEEcC--CCCEEEeeCCcccccCcccccc-------cccCCcCccChhHhcCCCCCChhhhhhhHHHHHHH
Confidence            99999999999986  8899999999998886643111       11345567777776655566778999888766554


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       186 ~  186 (262)
T cd05572         186 L  186 (262)
T ss_pred             H
Confidence            3

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.32  E-value=2e-11  Score=124.81  Aligned_cols=185  Identities=16%  Similarity=0.118  Sum_probs=118.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|..  +|+.|++|+.......                                  .+....      
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~----------------------------------~~~~~~------   45 (258)
T cd08215           6 KQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMS----------------------------------EKERED------   45 (258)
T ss_pred             eeeccCCCeEEEEEEEcCCCcEEEEEEeecccCC----------------------------------hHHHHH------
Confidence            5799999999999999  4899999987332111                                  011111      


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh---hcCCCHHHHHHHHHH--HHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYAVE--SYLEQIL  451 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~---~~g~d~~~ia~~li~--~~L~qi~  451 (765)
                      +..|.+.+..+.     ++++.-+.-........+++|||++|.+|.+.....   ...++...+...+..  ..+..+|
T Consensus        46 ~~~e~~~l~~l~-----~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh  120 (258)
T cd08215          46 ALNEVKILKKLN-----HPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLH  120 (258)
T ss_pred             HHHHHHHHHhcC-----CCChhheEEEEecCCEEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            223333333332     222222222222346779999999999998865432   134455544444433  3367899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..|++|+|++|.||++++  ++.++|+|||++.......  ...    ....++..++.++.......+...|++++...
T Consensus       121 ~~~~~H~dl~~~nil~~~--~~~~~l~d~~~~~~~~~~~--~~~----~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~  192 (258)
T cd08215         121 SRKILHRDIKPQNIFLTS--NGLVKLGDFGISKVLSSTV--DLA----KTVVGTPYYLSPELCQNKPYNYKSDIWSLGCV  192 (258)
T ss_pred             hCCEecccCChHHeEEcC--CCcEEECCccceeecccCc--cee----cceeeeecccChhHhccCCCCccccHHHHHHH
Confidence            999999999999999986  7899999999998776543  111    11123455666776665666777899988766


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +..++
T Consensus       193 ~~~l~  197 (258)
T cd08215         193 LYELC  197 (258)
T ss_pred             HHHHH
Confidence            54443

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.32  E-value=9.3e-12  Score=136.16  Aligned_cols=188  Identities=18%  Similarity=0.237  Sum_probs=115.4

Q ss_pred             hhcccC-cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004254          292 VFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (765)
Q Consensus       292 iF~~fd-~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (765)
                      +...|. .+.||.|++|.||+|+.  +|+.||||+........                              .    . 
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~------------------------------~----~-   58 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNV------------------------------T----H-   58 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccCh------------------------------h----H-
Confidence            334444 37899999999999998  69999999762111000                              0    0 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee-----ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH-
Q 004254          369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA-  442 (765)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~-----e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l-  442 (765)
                           ...+.+|...+.++.    +..-+.+..++.     +.....++||||++| .+.+....   ..+...+...+ 
T Consensus        59 -----~~~~~~E~~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~---~l~~~~~~~~~~  125 (353)
T cd07850          59 -----AKRAYRELVLMKLVN----HKNIIGLLNVFTPQKSLEEFQDVYLVMELMDA-NLCQVIQM---DLDHERMSYLLY  125 (353)
T ss_pred             -----HHHHHHHHHHHHhcC----CCCCcceeeeeccCCCccccCcEEEEEeccCC-CHHHHHhh---cCCHHHHHHHHH
Confidence                 011223444344332    211122222221     111246999999987 45443221   13433333322 


Q ss_pred             -HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC
Q 004254          443 -VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP  521 (765)
Q Consensus       443 -i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~  521 (765)
                       +-..+..+|..|++|+|++|+||+++.  ++.++|+|||++..+......       ........+++++........+
T Consensus       126 ql~~aL~~LH~~gi~H~dlkp~Nil~~~--~~~~kL~Dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~  196 (353)
T cd07850         126 QMLCGIKHLHSAGIIHRDLKPSNIVVKS--DCTLKILDFGLARTAGTSFMM-------TPYVVTRYYRAPEVILGMGYKE  196 (353)
T ss_pred             HHHHHHHHHHhCCeeeCCCCHHHEEECC--CCCEEEccCccceeCCCCCCC-------CCCcccccccCHHHHhCCCCCC
Confidence             234578899999999999999999986  889999999999877553220       0012344567777777666778


Q ss_pred             CCCHHHHHHHHHHHH
Q 004254          522 TGDTTAVRRTAQFFL  536 (765)
Q Consensus       522 ~~D~~~l~~~~~~~l  536 (765)
                      ..|++++...+.+++
T Consensus       197 ~~DvwslG~~l~~l~  211 (353)
T cd07850         197 NVDIWSVGCIMGEMI  211 (353)
T ss_pred             chhhHhHHHHHHHHH
Confidence            889999987766654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.32  E-value=2.3e-11  Score=128.22  Aligned_cols=181  Identities=17%  Similarity=0.166  Sum_probs=119.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++++.|++|+||+|..  +++.|++|+.+....                                           .+-.
T Consensus        25 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-------------------------------------------~~~~   61 (286)
T cd06614          25 EKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-------------------------------------------NKEL   61 (286)
T ss_pred             HhccCCCCeEEEEEEEccCCcEEEEEEEecCch-------------------------------------------hHHH
Confidence            6899999999999999  489999998844321                                           0011


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~  453 (765)
                      +..|...+..+.    + +++ .+...+ ......+++|||++|.+|.++.......++...+...+..  ..+..+|..
T Consensus        62 ~~~e~~~l~~l~----~-~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~  135 (286)
T cd06614          62 IINEILIMKDCK----H-PNIVDYYDSY-LVGDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQ  135 (286)
T ss_pred             HHHHHHHHHHCC----C-CCeeEEEEEE-EECCEEEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            223333333321    2 222 222222 3346789999999999999976543223444444333322  346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|.||+++.  ++.++++|||.+..+.......      ....++..++.++...-+......|++++...+.
T Consensus       136 gi~H~dl~p~ni~i~~--~~~~~l~d~~~~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~  207 (286)
T cd06614         136 NVIHRDIKSDNILLSK--DGSVKLADFGFAAQLTKEKSKR------NSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCI  207 (286)
T ss_pred             CeeeCCCChhhEEEcC--CCCEEECccchhhhhccchhhh------ccccCCcccCCHhHhcCCCCCCccccHHHHHHHH
Confidence            9999999999999985  8899999999987765432211      1112345566677665555667789999987776


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       208 ~l~  210 (286)
T cd06614         208 EMA  210 (286)
T ss_pred             HHH
Confidence            554

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.32  E-value=1.6e-11  Score=128.89  Aligned_cols=186  Identities=16%  Similarity=0.109  Sum_probs=117.1

Q ss_pred             ccccccceeEEEEEEeC-------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||.|++|.||+|.+.       +..|++|........                                         
T Consensus        12 ~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~-----------------------------------------   50 (277)
T cd05036          12 RALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSE-----------------------------------------   50 (277)
T ss_pred             eECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCH-----------------------------------------
Confidence            68999999999999983       367888866332211                                         


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceee--eccCCCeEEEEeecCCCChhhhhhhhhc------CCCHHHHHHHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDEL------GVDRKRLGRYAV  443 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy--~e~st~~vLVMEyieG~~L~d~~~l~~~------g~d~~~ia~~li  443 (765)
                      ..+.+|.+|...+.++.     ++++  .+.+  .......+++|||++|++|.++......      ..+...+...+.
T Consensus        51 ~~~~~~~~e~~~l~~l~-----~~~i--~~~~~~~~~~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~  123 (277)
T cd05036          51 QDESDFLMEALIMSKFN-----HQNI--VRLIGVSFERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCAR  123 (277)
T ss_pred             HHHHHHHHHHHHHHhCC-----CCCE--eeEEEEEccCCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence            11335566665554442     2222  2222  2233557999999999999986533221      233333333322


Q ss_pred             --HHHHHHHHhCCccccCCCCCcEEEeecC-CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004254          444 --ESYLEQILSHGFFHADPHPGNIAVDDVN-GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (765)
Q Consensus       444 --~~~L~qi~~~GffHaDpHPGNILV~~~~-~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~  520 (765)
                        -..+..+|..|++|+|++|+||+++... +..++|+|||++..+....-...    .+.......+++++....+..+
T Consensus       124 qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~  199 (277)
T cd05036         124 DVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRK----GGRAMLPIKWMPPEAFLDGIFT  199 (277)
T ss_pred             HHHHHHHHHHHCCEeecccchheEEEeccCCCcceEeccCccccccCCccceec----CCCCCccHhhCCHHHHhcCCcC
Confidence              2346788999999999999999998522 23589999999987643211000    0001113456778877777778


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004254          521 PTGDTTAVRRTAQFFL  536 (765)
Q Consensus       521 ~~~D~~~l~~~~~~~l  536 (765)
                      ...|++++...+.+++
T Consensus       200 ~~~DiwslG~il~el~  215 (277)
T cd05036         200 SKTDVWSFGVLLWEIF  215 (277)
T ss_pred             chhHHHHHHHHHHHHH
Confidence            8899999987665543

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.32  E-value=2.1e-11  Score=126.76  Aligned_cols=182  Identities=17%  Similarity=0.177  Sum_probs=119.0

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||.|++|.||+|.+ ++..|++|+.+++-..                                           .-+|
T Consensus        12 ~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~~-------------------------------------------~~~~   48 (260)
T cd05073          12 KKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMS-------------------------------------------VEAF   48 (260)
T ss_pred             eEecCccceEEEEEEecCCccEEEEecCCChhH-------------------------------------------HHHH
Confidence            6899999999999998 6788999987543110                                           0123


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      .+|...+.++    .+..-+.+...+.+  ...+++|||++|++|.++.... ....+...+...+  +-..+..+|..|
T Consensus        49 ~~e~~~l~~l----~~~~i~~~~~~~~~--~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~  122 (260)
T cd05073          49 LAEANVMKTL----QHDKLVKLHAVVTK--EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN  122 (260)
T ss_pred             HHHHHHHHhc----CCCCcceEEEEEcC--CCeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCC
Confidence            4454444433    22223444444433  5679999999999998865322 1223333333222  233467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|++|.||+++.  ++.++++|||.+..+........     ........++.+++...+..+...|++++.-.+.+
T Consensus       123 i~H~dl~p~ni~i~~--~~~~~l~d~~~~~~~~~~~~~~~-----~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~  195 (260)
T cd05073         123 YIHRDLRAANILVSA--SLVCKIADFGLARVIEDNEYTAR-----EGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLME  195 (260)
T ss_pred             ccccccCcceEEEcC--CCcEEECCCcceeeccCCCcccc-----cCCcccccccCHhHhccCCcCccccchHHHHHHHH
Confidence            999999999999985  88999999999987654221100     00112344677777777777778899998876655


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       196 l~  197 (260)
T cd05073         196 IV  197 (260)
T ss_pred             HH
Confidence            54

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.32  E-value=1.2e-11  Score=135.00  Aligned_cols=145  Identities=21%  Similarity=0.284  Sum_probs=98.4

Q ss_pred             cccCc-ccccccceeEEEEEEeC--CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          294 ERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l~--G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      +.|.. .-+|.|.+|.||.|.++  +...|+||.-..   .+..                                    
T Consensus        77 ~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~---~l~~------------------------------------  117 (459)
T KOG0610|consen   77 RHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKE---SLAS------------------------------------  117 (459)
T ss_pred             HHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHH---HHhh------------------------------------
Confidence            34443 57999999999999994  589999998211   0000                                    


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCe--EEEEeecCCCChhhhhhhhhcC---CCHHHHHHHHHHH
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQ--ILTMEYVPGIKINRIQSLDELG---VDRKRLGRYAVES  445 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~--vLVMEyieG~~L~d~~~l~~~g---~d~~~ia~~li~~  445 (765)
                             +++...++.=++.+...++-.+|..|..+.++.  +|+||||+|+.|..+.+.....   .+..+....-+-.
T Consensus       118 -------rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~  190 (459)
T KOG0610|consen  118 -------RKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLL  190 (459)
T ss_pred             -------hhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHH
Confidence                   001111111112222234456888888777765  8999999999998875432222   2223333344556


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceecc
Q 004254          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  486 (765)
Q Consensus       446 ~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L  486 (765)
                      .|+++|-.||+.||+||+||||.+  +|.|.|.||-++.+.
T Consensus       191 ALEYLHmlGivYRDLKPENILvre--dGHIMLsDFDLS~~~  229 (459)
T KOG0610|consen  191 ALEYLHMLGIVYRDLKPENILVRE--DGHIMLSDFDLSLRC  229 (459)
T ss_pred             HHHHHHhhceeeccCCcceeEEec--CCcEEeeeccccccC
Confidence            689999999999999999999997  999999999887654

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.32  E-value=1.9e-11  Score=127.90  Aligned_cols=118  Identities=14%  Similarity=0.048  Sum_probs=79.2

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCC-------cEEE
Q 004254          407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGG-------RLIF  477 (765)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g-------~l~L  477 (765)
                      ....+++|||++|+++..+........+...+...+  +...+..+|..|++|+|++|.||++..  ++       .+++
T Consensus        76 ~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~--~~~~~~~~~~~~l  153 (262)
T cd05077          76 DVENIMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAR--EGIDGECGPFIKL  153 (262)
T ss_pred             CCCCEEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEec--CCccCCCCceeEe
Confidence            456799999999999887653322234444433322  223478889999999999999999975  33       3899


Q ss_pred             EeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCCHHHHHHHHHHHH
Q 004254          478 YDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       478 iDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~-lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      .|||++..+.....          ..++..+++++... .+..+...|++++.-.+.+++
T Consensus       154 ~d~g~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~  203 (262)
T cd05077         154 SDPGIPITVLSRQE----------CVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEIC  203 (262)
T ss_pred             CCCCCCccccCccc----------ccccccccChhhhcCCCCCCchhHHHHHHHHHHHHH
Confidence            99998866532210          12344567777665 344566789999887665543

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.32  E-value=2.9e-11  Score=125.21  Aligned_cols=182  Identities=16%  Similarity=0.131  Sum_probs=116.4

Q ss_pred             cccccceeEEEEEEe--CC---eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KG---EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G---~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      -||.|++|+||+|+.  ++   ..||+|+.++....                                         ..+
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~-----------------------------------------~~~   40 (257)
T cd05060           2 ELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIA-----------------------------------------AGK   40 (257)
T ss_pred             ccCccCceeEEEeEeeccCCCcceEEEEecccccch-----------------------------------------HHH
Confidence            489999999999987  22   78999987443211                                         011


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~  452 (765)
                      -++.+|...+.++    .+..-+.+...+  .....+++|||++|++|.++..... ..+...+...+.+  ..+..+|.
T Consensus        41 ~~~~~e~~~l~~l----~h~~iv~~~~~~--~~~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lh~  113 (257)
T cd05060          41 KEFLREASVMAQL----DHPCIVRLIGVC--KGEPLMLVMELAPLGPLLKYLKKRR-EIPVSDLKELAHQVAMGMAYLES  113 (257)
T ss_pred             HHHHHHHHHHHhc----CCCCeeeEEEEE--cCCceEEEEEeCCCCcHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHhh
Confidence            2334444444433    221112222222  2456799999999999988654222 3444443333322  23677899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHh--hcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIY--EKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~--~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      .|++|+|++|.||++++  ++.++|+|||++..+.......     ....  .....+++++....+..+...|++++.-
T Consensus       114 ~~i~H~di~p~nili~~--~~~~kl~df~~~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  186 (257)
T cd05060         114 KHFVHRDLAARNVLLVN--RHQAKISDFGMSRALGAGSDYY-----RATTAGRWPLKWYAPECINYGKFSSKSDVWSYGV  186 (257)
T ss_pred             cCeeccCcccceEEEcC--CCcEEeccccccceeecCCccc-----ccccCccccccccCHHHhcCCCCCccchHHHHHH
Confidence            99999999999999986  8899999999988775432210     0100  1123567788877777888899999987


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       187 ~l~~~~  192 (257)
T cd05060         187 TLWEAF  192 (257)
T ss_pred             HHHHHH
Confidence            665543

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.31  E-value=2.1e-11  Score=113.93  Aligned_cols=134  Identities=25%  Similarity=0.338  Sum_probs=95.4

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      ++++.|+++.||+++.++..++||+.++...                                            +.++.
T Consensus         4 ~~i~~g~~~~v~~~~~~~~~~~iK~~~~~~~--------------------------------------------~~~~~   39 (155)
T cd05120           4 KLLKGGLTNRVYLLGTKDEDYVLKINPSREK--------------------------------------------GADRE   39 (155)
T ss_pred             eecccccccceEEEEecCCeEEEEecCCCCc--------------------------------------------hhHHH
Confidence            5799999999999999888999998754321                                            12455


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccC--CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHh---C
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS---H  453 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s--t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~---~  453 (765)
                      .|...++.+.+.     ...+|+++....  +..+++|||++|..+....     ......+. ..+...+..+|.   .
T Consensus        40 ~e~~~~~~l~~~-----~~~~p~~~~~~~~~~~~~~v~e~~~g~~~~~~~-----~~~~~~~~-~~~~~~l~~lh~~~~~  108 (155)
T cd05120          40 REVAILQLLARK-----GLPVPKVLASGESDGWSYLLMEWIEGETLDEVS-----EEEKEDIA-EQLAELLAKLHQLPLL  108 (155)
T ss_pred             HHHHHHHHHHHc-----CCCCCeEEEEcCCCCccEEEEEecCCeecccCC-----HHHHHHHH-HHHHHHHHHHhCCCce
Confidence            666666666653     356777776443  3689999999998876530     00112222 223344666665   4


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (765)
                      |++|+|+||+||++++  ++.++++|||.+...++.
T Consensus       109 ~i~H~Dl~~~Nil~~~--~~~~~l~Df~~~~~~~~~  142 (155)
T cd05120         109 VLCHGDLHPGNILVDD--GKILGIIDWEYAGYGPPA  142 (155)
T ss_pred             EEEecCCCcceEEEEC--CcEEEEEecccccCCChH
Confidence            8999999999999985  689999999999876653

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.31  E-value=3.2e-11  Score=124.50  Aligned_cols=185  Identities=16%  Similarity=0.078  Sum_probs=118.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||.++.  +|+.|++|.....-.                             +.           ...-+
T Consensus         6 ~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~-----------------------------~~-----------~~~~~   45 (256)
T cd08221           6 RVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRL-----------------------------SE-----------KERRD   45 (256)
T ss_pred             eEecccCCceEEEEEEcCCCcEEEEEEEeeccc-----------------------------ch-----------hHHHH
Confidence            5799999999999988  689999997521100                             00           00113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      +.+|...++++.    +..-+.+...+ ......+++|||++|++|.+..... ....+...+...+.  -..+..+|..
T Consensus        46 ~~~e~~~l~~~~----h~~i~~~~~~~-~~~~~~~~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~  120 (256)
T cd08221          46 ALNEIVILSLLQ----HPNIIAYYNHF-MDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKA  120 (256)
T ss_pred             HHHHHHHHHhCC----CCCeeEEEeEE-ecCCeEEEEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            445555555442    22222333333 3345679999999999999865432 12234444333332  2346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|+||++++  ++.++++|||.+.........      .....+...++++++......+...|++++...+.
T Consensus       121 ~i~h~dl~p~ni~~~~--~~~~kl~d~~~~~~~~~~~~~------~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~  192 (256)
T cd08221         121 GILHRDIKTLNIFLTK--AGLIKLGDFGISKILGSEYSM------AETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLY  192 (256)
T ss_pred             CccccCCChHhEEEeC--CCCEEECcCcceEEccccccc------ccccCCCccccCHhhcCCCCCCCcchhHHHHHHHH
Confidence            9999999999999986  789999999998877543310      01122455667777665444556789999887665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       193 ~l~  195 (256)
T cd08221         193 ELL  195 (256)
T ss_pred             HHH
Confidence            554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.31  E-value=2e-11  Score=126.65  Aligned_cols=193  Identities=14%  Similarity=0.104  Sum_probs=118.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|..  +|+.||+|+.++.......                              ..+      ..-+
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~------------------------------~~~------~~~~   49 (268)
T cd06630           6 QQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSE------------------------------QEE------VVEA   49 (268)
T ss_pred             ceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchh------------------------------HHH------HHHH
Confidence            5799999999999998  6999999987543211100                              000      1123


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|++.+.++.    +..-+.+..++ ......+++|||++|++|.++... ....+...+...+  +-..+..+|..|
T Consensus        50 ~~~e~~~l~~l~----h~~iv~~~~~~-~~~~~~~~v~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~ql~~al~~LH~~~  123 (268)
T cd06630          50 LRKEIRLMARLN----HPHIIRMLGAT-CEDSHFNLFVEWMAGGSVSHLLSK-YGAFKEAVIINYTEQLLRGLSYLHENQ  123 (268)
T ss_pred             HHHHHHHHHHcC----CCceehhhcee-ccCCeEEEEEeccCCCcHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            445555555542    22222222222 234567999999999999987532 1223333333322  233467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|++|+||+++. ++..++|+|||++..+.......  ........+...++.+++..-...+...|++++...+.+
T Consensus       124 i~H~~i~~~nil~~~-~~~~~~l~dfg~~~~~~~~~~~~--~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~  200 (268)
T cd06630         124 IIHRDVKGANLLIDS-TGQRLRIADFGAAARLAAKGTGA--GEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIE  200 (268)
T ss_pred             eecCCCCHHHEEEcC-CCCEEEEcccccccccccccccC--CccccccccccceeCHhHhccCCCCcccchHHHHHHHHH
Confidence            999999999999974 23469999999998876431100  000011123445666776655555677899999877666


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       201 l~  202 (268)
T cd06630         201 MA  202 (268)
T ss_pred             HH
Confidence            54

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.31  E-value=1.4e-11  Score=128.09  Aligned_cols=185  Identities=17%  Similarity=0.097  Sum_probs=116.3

Q ss_pred             cccccceeEEEEEEeC--C------eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARLK--G------EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       300 PIgsaSiGQVhrA~l~--G------~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      .||.|++|.||+|+..  +      +.|+||....+....                                        
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~----------------------------------------   41 (269)
T cd05044           2 FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQ----------------------------------------   41 (269)
T ss_pred             ccccccceeEEeeeecccccCcccceeehhhhhhcccchh----------------------------------------
Confidence            6899999999999972  2      678999653321100                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh------cCCCHHHHHHHHH--
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE------LGVDRKRLGRYAV--  443 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~------~g~d~~~ia~~li--  443 (765)
                       ....+.+|+..+..+     ++++|.-..-+.......+++|||++|++|.+......      ...+...+.....  
T Consensus        42 -~~~~~~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  115 (269)
T cd05044          42 -EKKEFLKEAHLMSNF-----NHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDV  115 (269)
T ss_pred             -hHHHHHHHHHHHHhc-----CCCCeeeEeeeecCCCCeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHH
Confidence             011244455544444     22333322222234456799999999999988653211      1123333333222  


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeecCCC-----cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004254          444 ESYLEQILSHGFFHADPHPGNIAVDDVNGG-----RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  518 (765)
Q Consensus       444 ~~~L~qi~~~GffHaDpHPGNILV~~~~~g-----~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~  518 (765)
                      -..+..+|..|++|+|++|.||++++  ++     .++++|||++..+........    .+.......+++++...-+.
T Consensus       116 ~~~l~~lH~~~i~H~dl~p~nil~~~--~~~~~~~~~~l~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~  189 (269)
T cd05044         116 AKGCVYLEQMHFIHRDLAARNCLVSE--KGYDADRVVKIGDFGLARDIYKSDYYRK----EGEGLLPVRWMAPESLLDGK  189 (269)
T ss_pred             HHHHHHHHhCCcccCCCChheEEEec--CCCCCCcceEECCccccccccccccccc----CcccCCCccccCHHHHccCC
Confidence            23367889999999999999999986  44     799999999987643321100    01111234567788887788


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 004254          519 LVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       519 ~~~~~D~~~l~~~~~~~l  536 (765)
                      .++..|++++.-.+.+++
T Consensus       190 ~~~~~Dv~slG~il~ell  207 (269)
T cd05044         190 FTTQSDVWSFGVLMWEIL  207 (269)
T ss_pred             cccchhHHHHHHHHHHHH
Confidence            888899999987766654

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.31  E-value=2.1e-11  Score=130.31  Aligned_cols=187  Identities=15%  Similarity=0.107  Sum_probs=116.0

Q ss_pred             cccccccceeEEEEEEeC---------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l~---------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (765)
                      .++||+|++|.||+|...         +..||+|+.++.....   +                                 
T Consensus        23 ~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~---~---------------------------------   66 (307)
T cd05098          23 GKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEK---D---------------------------------   66 (307)
T ss_pred             eeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChH---H---------------------------------
Confidence            368999999999999862         2469999886543211   0                                 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cC
Q 004254          369 SVLYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LG  432 (765)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g  432 (765)
                           .-++..|...+.++.    .+++| .+...+ ......+++|||++|++|.++.....               ..
T Consensus        67 -----~~~~~~e~~~l~~l~----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~  136 (307)
T cd05098          67 -----LSDLISEMEMMKMIG----KHKNIINLLGAC-TQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQ  136 (307)
T ss_pred             -----HHHHHHHHHHHHHhc----CCCCEeeEEEEE-ecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCcccc
Confidence                 012333444444332    22322 222222 33456799999999999988754321               11


Q ss_pred             CCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHH
Q 004254          433 VDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVL  510 (765)
Q Consensus       433 ~d~~~ia~~li~--~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~  510 (765)
                      .+...+...+.+  ..+..+|..|++|+|+||.||++++  ++.++|+|||.+..+........  .  ........+++
T Consensus       137 l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~--~~~~kL~dfg~a~~~~~~~~~~~--~--~~~~~~~~y~a  210 (307)
T cd05098         137 LSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTE--DNVMKIADFGLARDIHHIDYYKK--T--TNGRLPVKWMA  210 (307)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccccccHHheEEcC--CCcEEECCCcccccccccchhhc--c--ccCCCccceeC
Confidence            233333333322  3478889999999999999999986  78999999999876643211100  0  00011235677


Q ss_pred             HHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          511 QAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       511 ~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ++....+..+...|++++.-.+.+++
T Consensus       211 PE~~~~~~~~~~~DvwslG~~l~el~  236 (307)
T cd05098         211 PEALFDRIYTHQSDVWSFGVLLWEIF  236 (307)
T ss_pred             hHHhccCCCCcHHHHHHHHHHHHHHH
Confidence            77776666777789999886665543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.31  E-value=1e-11  Score=130.12  Aligned_cols=185  Identities=18%  Similarity=0.155  Sum_probs=115.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+........                                  ..      +-+
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~----------------------------------~~------~~~   45 (286)
T cd07832           6 GRIGEGAHGIVFKAKDRETGETVALKKVALRRLEG----------------------------------GI------PNQ   45 (286)
T ss_pred             eecccCCCcEEEEEEECCCCceEEEEEEEcccccc----------------------------------hh------hHH
Confidence            5699999999999998  68999999874321100                                  00      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|...+.++.    +..-+.+...+ ......++||||+ |++|.+.........+...+...+  +-..+.++|..|
T Consensus        46 ~~~e~~~l~~~~----~~~i~~~~~~~-~~~~~~~~v~e~~-~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~  119 (286)
T cd07832          46 ALREIKALQACQ----HPYVVKLLDVF-PHGSGFVLVMEYM-PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANG  119 (286)
T ss_pred             HHHHHHHHHhCC----CCCCcceeeEE-ecCCeeEEEeccc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            334444343332    21112222222 2355679999999 999988654333334544443332  223467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|+||.||++++  ++.++++|||++..+.......+.     ...++..+++++....+ ...+..|++++...+.
T Consensus       120 i~H~dl~p~ni~~~~--~~~~~l~dfg~~~~~~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~  192 (286)
T cd07832         120 IMHRDLKPANLLISA--DGVLKIADFGLARLFSEEEPRLYS-----HQVATRWYRAPELLYGARKYDPGVDLWAVGCIFA  192 (286)
T ss_pred             eecCCcCHHHEEEcC--CCcEEEeeeeecccccCCCCCccc-----cccCcccccCceeeeccccCCchhHHHHHHHHHH
Confidence            999999999999986  789999999999877654321111     11234455666654332 2356679988887665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       193 ~l~  195 (286)
T cd07832         193 ELL  195 (286)
T ss_pred             HHH
Confidence            544

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.31  E-value=3.4e-11  Score=127.32  Aligned_cols=182  Identities=20%  Similarity=0.225  Sum_probs=117.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|.+  +++.||+|+..+....                                         ..+-+
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~-----------------------------------------~~~~~   45 (287)
T cd06621           7 SRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNP-----------------------------------------DLQKQ   45 (287)
T ss_pred             EEeccCCceEEEEEEECCCCeEEEEEEEecCCch-----------------------------------------HHHHH
Confidence            6899999999999999  5899999987432111                                         01123


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeecc-CCCeEEEEeecCCCChhhhhhh-h--hcCCCHHHHHHHH--HHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEY-TTPQILTMEYVPGIKINRIQSL-D--ELGVDRKRLGRYA--VESYLEQ  449 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l-~--~~g~d~~~ia~~l--i~~~L~q  449 (765)
                      +.+|.+.+.++.     +++| .+...+.+. ....+|||||++|++|.++... .  ........+...+  +-..+..
T Consensus        46 ~~~e~~~l~~l~-----h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~  120 (287)
T cd06621          46 ILRELEINKSCK-----SPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSY  120 (287)
T ss_pred             HHHHHHHHHhCC-----CCCeeeeeeEEEccCCCeEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            445555554442     2322 222233222 2356999999999999875431 1  1122333332222  2234677


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..|++|+|++|+||+++.  ++.++++|||++..+......        ...++..++.++....+..+...|++++.
T Consensus       121 lH~~~i~H~dl~~~nil~~~--~~~~~l~dfg~~~~~~~~~~~--------~~~~~~~y~~pE~~~~~~~~~~~Dv~slG  190 (287)
T cd06621         121 LHSRKIIHRDIKPSNILLTR--KGQVKLCDFGVSGELVNSLAG--------TFTGTSFYMAPERIQGKPYSITSDVWSLG  190 (287)
T ss_pred             HHHCCcccCCCCHHHEEEec--CCeEEEeeccccccccccccc--------cccCCccccCHHHhcCCCCCchhhHHHHH
Confidence            89999999999999999986  788999999998766543221        11234456677777666667788999988


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       191 ~il~~l~  197 (287)
T cd06621         191 LTLLEVA  197 (287)
T ss_pred             HHHHHHH
Confidence            7766554

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.31  E-value=1.4e-11  Score=129.80  Aligned_cols=123  Identities=14%  Similarity=0.142  Sum_probs=86.4

Q ss_pred             CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceec
Q 004254          408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS  485 (765)
Q Consensus       408 t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~  485 (765)
                      ...+++|||++|++|.++.......++...+....  +-..+..+|..|++|+|++|.||++++  ++.++++|||++..
T Consensus        81 ~~~~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~--~~~~kl~Dfg~~~~  158 (279)
T cd05111          81 ASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKS--DSIVQIADFGVADL  158 (279)
T ss_pred             CccEEEEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcC--CCcEEEcCCcccee
Confidence            45689999999999998764333334444443332  223467889999999999999999985  88999999999987


Q ss_pred             cChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          486 ISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       486 L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +.+......    .....+...++.++....+..+...|++++.-.+.+++
T Consensus       159 ~~~~~~~~~----~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~  205 (279)
T cd05111         159 LYPDDKKYF----YSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMM  205 (279)
T ss_pred             ccCCCcccc----cCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHH
Confidence            754432211    11122334567777777777788899999987665554

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.31  E-value=3.8e-11  Score=120.00  Aligned_cols=139  Identities=25%  Similarity=0.305  Sum_probs=104.8

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      .+++.|.-+.++.+.+.|.++++|..-|.....-+.|.+                                 +.+| .-.
T Consensus         2 ~~i~~GAEa~i~~~~~~g~~av~K~Ri~K~YR~p~LD~k---------------------------------lrr~-Rt~   47 (204)
T COG3642           2 DLIKQGAEAIIYLTDFLGLPAVVKERIPKRYRHPELDEK---------------------------------LRRE-RTR   47 (204)
T ss_pred             chhhCCcceeEEeeeccCcceEEEeecCcccCChHHHHH---------------------------------HHHH-HHH
Confidence            468889999999998888889999886655444333332                                 2222 457


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHA  458 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~GffHa  458 (765)
                      +||+.+.+.+.     .+|.+|.+|.-......|||||++|..|.|.....     +..+.+. +...+.-+|..||+|+
T Consensus        48 ~Earil~~a~~-----~GV~~P~v~dvD~~~~~I~me~I~G~~lkd~l~~~-----~~~~~r~-vG~~vg~lH~~givHG  116 (204)
T COG3642          48 REARILAKARE-----AGVPVPIVYDVDPDNGLIVMEYIEGELLKDALEEA-----RPDLLRE-VGRLVGKLHKAGIVHG  116 (204)
T ss_pred             HHHHHHHHHHH-----cCCCCCeEEEEcCCCCEEEEEEeCChhHHHHHHhc-----chHHHHH-HHHHHHHHHhcCeecC
Confidence            89999988876     36999999998888889999999999998754321     1222222 3344566899999999


Q ss_pred             CCCCCcEEEeecCCCcEEEEeecceec
Q 004254          459 DPHPGNIAVDDVNGGRLIFYDFGMMGS  485 (765)
Q Consensus       459 DpHPGNILV~~~~~g~l~LiDFGlv~~  485 (765)
                      ||.+.||++.   ++++++|||||...
T Consensus       117 DLTtsNiIl~---~~~i~~IDfGLg~~  140 (204)
T COG3642         117 DLTTSNIILS---GGRIYFIDFGLGEF  140 (204)
T ss_pred             CCccceEEEe---CCcEEEEECCcccc
Confidence            9999999997   56799999999774

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.31  E-value=2.9e-11  Score=126.58  Aligned_cols=182  Identities=16%  Similarity=0.170  Sum_probs=112.1

Q ss_pred             ccccccceeEEEEEEe--CCe--EEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGE--EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~--~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      +.||.|++|.||+|++  +|.  .|++|..+......                                         ..
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~-----------------------------------------~~   39 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD-----------------------------------------DH   39 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHH-----------------------------------------HH
Confidence            3689999999999998  354  46778663221110                                         01


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCHHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKR  437 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~~~  437 (765)
                      -++.+|...+.++.    ++++|  .+++.  ......+++|||++|++|.+......               ..+....
T Consensus        40 ~~~~~E~~~l~~l~----~h~~i--v~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~  113 (270)
T cd05047          40 RDFAGELEVLCKLG----HHPNI--INLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ  113 (270)
T ss_pred             HHHHHHHHHHHhhc----cCCCe--eeEEEEEecCCCceEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHH
Confidence            13445555554443    22332  22222  23445799999999999988653211               0122333


Q ss_pred             HHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004254          438 LGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (765)
Q Consensus       438 ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~  515 (765)
                      +...+  +...+..+|..|++|+|++|.||+++.  ++.++++|||++..........       .......+++++...
T Consensus       114 ~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~--~~~~kl~dfgl~~~~~~~~~~~-------~~~~~~~y~apE~~~  184 (270)
T cd05047         114 LLHFAADVARGMDYLSQKQFIHRDLAARNILVGE--NYVAKIADFGLSRGQEVYVKKT-------MGRLPVRWMAIESLN  184 (270)
T ss_pred             HHHHHHHHHHHHHHHHHCCEeecccccceEEEcC--CCeEEECCCCCccccchhhhcc-------CCCCccccCChHHHc
Confidence            33322  223468889999999999999999986  8899999999875432211110       011123466777766


Q ss_pred             cCCCCCCCCHHHHHHHHHHHH
Q 004254          516 MGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       516 lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ....+...|++++.-.+.+++
T Consensus       185 ~~~~~~~~Di~slG~il~el~  205 (270)
T cd05047         185 YSVYTTNSDVWSYGVLLWEIV  205 (270)
T ss_pred             cCCCCchhhHHHHHHHHHHHH
Confidence            666677889999887665543

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.31  E-value=2.6e-11  Score=128.97  Aligned_cols=184  Identities=15%  Similarity=0.135  Sum_probs=113.0

Q ss_pred             ccccccceeEEEEEEe--CCe--EEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGE--EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~--~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      +.||.|++|+||+|++  +|.  .|++|..+......                                         ..
T Consensus         8 ~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------------~~   46 (297)
T cd05089           8 DVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASEN-----------------------------------------DH   46 (297)
T ss_pred             eeecCCCcceEEEEEecCCCCcceeEEEEccccCCHH-----------------------------------------HH
Confidence            5799999999999998  343  47888653211110                                         01


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCHHHHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKRLG  439 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~~~ia  439 (765)
                      -+|.+|...+.++.    +++++.-..-+.......+++|||+++++|.++.....               ..+....+.
T Consensus        47 ~~~~~E~~~l~~l~----~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~  122 (297)
T cd05089          47 RDFAGELEVLCKLG----HHPNIINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLL  122 (297)
T ss_pred             HHHHHHHHHHHhhc----CCCchhheEEEEccCCcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHH
Confidence            13455655555542    22332211112223455799999999999988653211               112233333


Q ss_pred             HHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC
Q 004254          440 RYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG  517 (765)
Q Consensus       440 ~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG  517 (765)
                      ..+  +...+..+|..|++|+|+||.||++++  ++.++|+|||++...........       ......+++++....+
T Consensus       123 ~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~--~~~~kl~dfg~~~~~~~~~~~~~-------~~~~~~y~aPE~~~~~  193 (297)
T cd05089         123 QFASDVATGMQYLSEKQFIHRDLAARNVLVGE--NLASKIADFGLSRGEEVYVKKTM-------GRLPVRWMAIESLNYS  193 (297)
T ss_pred             HHHHHHHHHHHHHHHCCcccCcCCcceEEECC--CCeEEECCcCCCccccceeccCC-------CCcCccccCchhhccC
Confidence            322  223478899999999999999999986  78999999999864332111100       0112235667766666


Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q 004254          518 VLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       518 ~~~~~~D~~~l~~~~~~~l  536 (765)
                      ..+...|++++.-.+.+++
T Consensus       194 ~~~~~~DvwSlG~il~el~  212 (297)
T cd05089         194 VYTTKSDVWSFGVLLWEIV  212 (297)
T ss_pred             CCCchhhHHHHHHHHHHHH
Confidence            6677889999887766554

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.31  E-value=2e-11  Score=128.97  Aligned_cols=124  Identities=20%  Similarity=0.151  Sum_probs=85.1

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhh----------cCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCc
Q 004254          407 TTPQILTMEYVPGIKINRIQSLDE----------LGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGR  474 (765)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~----------~g~d~~~ia~~li~--~~L~qi~~~GffHaDpHPGNILV~~~~~g~  474 (765)
                      ....+++|||++|.+|.++.....          ...+...+...+.+  ..+..+|..|++|+|++|.||+++.  ++.
T Consensus        91 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Nili~~--~~~  168 (296)
T cd05051          91 DPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVGK--NYT  168 (296)
T ss_pred             CCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccchhceeecC--CCc
Confidence            356799999999999988653221          12344444433322  3367889999999999999999986  789


Q ss_pred             EEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          475 LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       475 l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ++++|||++..+........    .........+++++....+..++..|++++.-.+.+++
T Consensus       169 ~~l~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~  226 (296)
T cd05051         169 IKIADFGMSRNLYSSDYYRV----QGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEIL  226 (296)
T ss_pred             eEEccccceeecccCcceee----cCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHH
Confidence            99999999876543221110    01112234577888877777788899999987666554

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=2.8e-12  Score=131.49  Aligned_cols=187  Identities=21%  Similarity=0.227  Sum_probs=126.6

Q ss_pred             cccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      ++|+- +|+|.|-||+||.|+.  ++--||+||.-.       ..+                          +......+
T Consensus        22 ~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfK-------sqi--------------------------~~~~v~~q   68 (281)
T KOG0580|consen   22 DDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFK-------SQI--------------------------LKTQVEHQ   68 (281)
T ss_pred             hhccccccccCCccccEeEeeeccCCcEEEEeeeeH-------HHH--------------------------HHhcchhh
Confidence            35664 8999999999999999  588999999811       000                          01223344


Q ss_pred             HHHHHHHHHHH--HHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc-CCCHHHHHH--HHHHH
Q 004254          371 LYQEIDYTQEA--ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGR--YAVES  445 (765)
Q Consensus       371 l~~ElDf~~EA--~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~-g~d~~~ia~--~li~~  445 (765)
                      +.+|+....-.  .|+-++...|.+             +.+.+|++||..++.+......... .++...-+.  ..+..
T Consensus        69 lrREiEIqs~L~hpnilrlY~~fhd-------------~~riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~  135 (281)
T KOG0580|consen   69 LRREIEIQSHLRHPNILRLYGYFHD-------------SKRIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLAN  135 (281)
T ss_pred             hhheeEeecccCCccHHhhhhheec-------------cceeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHH
Confidence            55554433222  266666666554             4566899999998887664331122 233222222  22334


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004254          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (765)
Q Consensus       446 ~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~  525 (765)
                      .+..+|..+++|||+||.|+|++.  .|.+++.|||-...-+...|..+        .+..+++.+++.+--.....+|.
T Consensus       136 Al~y~h~k~VIhRdiKpenlLlg~--~~~lkiAdfGwsV~~p~~kR~tl--------cgt~dyl~pEmv~~~~hd~~Vd~  205 (281)
T KOG0580|consen  136 ALLYCHLKRVIHRDIKPENLLLGS--AGELKIADFGWSVHAPSNKRKTL--------CGTLDYLPPEMVEGRGHDKFVDL  205 (281)
T ss_pred             HHHHhccCCcccCCCCHHHhccCC--CCCeeccCCCceeecCCCCceee--------ecccccCCHhhcCCCCccchhhH
Confidence            577789999999999999999986  89999999999887765555544        45667778888877666777888


Q ss_pred             HHHHHHHHHHH
Q 004254          526 TAVRRTAQFFL  536 (765)
Q Consensus       526 ~~l~~~~~~~l  536 (765)
                      +.++....+|+
T Consensus       206 w~lgvl~yefl  216 (281)
T KOG0580|consen  206 WSLGVLCYEFL  216 (281)
T ss_pred             HHHHHHHHHHH
Confidence            88876655554

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.31  E-value=3.4e-11  Score=123.68  Aligned_cols=159  Identities=18%  Similarity=0.208  Sum_probs=105.0

Q ss_pred             cccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .+.+++++||+||.+...|++++.+..    ...                   |       -|   ....    ... -+
T Consensus         7 ~~~l~~~~f~~v~~~~~~~~k~~~~~l----~~~-------------------~-------~~---~~~~----~~~-l~   48 (218)
T PRK12274          7 NEPLKSDTFGRILLVRGGERKFVRRDL----SAA-------------------P-------WW---LRGV----AWW-LA   48 (218)
T ss_pred             ceeecCCCcceEEEeecCCceeeeccc----ccc-------------------h-------hh---hhhH----HHH-HH
Confidence            367999999999987777888776633    000                   0       00   0000    011 35


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFH  457 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~GffH  457 (765)
                      .+|++.+.++.+      ...+|+++.-  ...+++|||++|.+|.+....     ....+... +...++++|..|++|
T Consensus        49 ~rE~~iL~~L~~------~~~vP~ll~~--~~~~lvmeyI~G~~L~~~~~~-----~~~~~~~q-i~~~L~~lH~~GIvH  114 (218)
T PRK12274         49 RREALALRQLDG------LPRTPRLLHW--DGRHLDRSYLAGAAMYQRPPR-----GDLAYFRA-ARRLLQQLHRCGVAH  114 (218)
T ss_pred             HHHHHHHHhcCC------CCCCCEEEEE--cCEEEEEeeecCccHHhhhhh-----hhHHHHHH-HHHHHHHHHHCcCcc
Confidence            667777776642      2457888752  567999999999998653211     11222222 344688899999999


Q ss_pred             cCC-CCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004254          458 ADP-HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (765)
Q Consensus       458 aDp-HPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~  515 (765)
                      +|+ ||+||+++.  +|.++|+|||++...++..+  ..+   -+...|...+...+..
T Consensus       115 rDL~kp~NILv~~--~g~i~LIDFG~A~~~~~~~~--~~r---~L~~rDl~~llk~~~~  166 (218)
T PRK12274        115 NDLAKEANWLVQE--DGSPAVIDFQLAVRGNPRAR--WMR---LLAREDLRHLLKHKRM  166 (218)
T ss_pred             CCCCCcceEEEcC--CCCEEEEECCCceecCCcch--HHH---HHHHHHHHHHHHHHHh
Confidence            999 799999985  78999999999997665433  111   1224788888887755

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.31  E-value=1.2e-11  Score=129.79  Aligned_cols=181  Identities=14%  Similarity=0.178  Sum_probs=112.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.+|.|++|+||+|+.  +|+.||+|+.......                                           .-+
T Consensus        22 ~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~-------------------------------------------~~~   58 (282)
T cd06636          22 EVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDE-------------------------------------------EEE   58 (282)
T ss_pred             eeeccCCCeEEEEEEEcCCCcEEEEEEEecChHH-------------------------------------------HHH
Confidence            5799999999999999  5899999987321100                                           001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec--------cCCCeEEEEeecCCCChhhhhhhhhc-CCCHHHHHHH--HHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWE--------YTTPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRY--AVES  445 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e--------~st~~vLVMEyieG~~L~d~~~l~~~-g~d~~~ia~~--li~~  445 (765)
                      +..|...+.++.    +++++  .+.+..        .....+++|||++|++|.++...... ..+...+...  .+..
T Consensus        59 ~~~e~~~l~~~~----~h~~i--~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~  132 (282)
T cd06636          59 IKLEINMLKKYS----HHRNI--ATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILR  132 (282)
T ss_pred             HHHHHHHHHHhc----CCCcE--EEEeeehhcccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence            223333333332    22222  222211        12356899999999999886543222 2333333222  2334


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCCC
Q 004254          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVLV  520 (765)
Q Consensus       446 ~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-----G~~~  520 (765)
                      .+..+|..|++|+|++|.||++++  ++.++|+|||++..+.......      ....++..+++++.+..     ...+
T Consensus       133 al~~LH~~~ivH~dl~~~nili~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~l~~~~~~~~~~~  204 (282)
T cd06636         133 GLAHLHAHKVIHRDIKGQNVLLTE--NAEVKLVDFGVSAQLDRTVGRR------NTFIGTPYWMAPEVIACDENPDATYD  204 (282)
T ss_pred             HHHHHHHCCcccCCCCHHHEEECC--CCCEEEeeCcchhhhhccccCC------CcccccccccCHhhcCcccCcCcCCC
Confidence            467889999999999999999986  8899999999987664322110      11224556777776542     2334


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004254          521 PTGDTTAVRRTAQFFL  536 (765)
Q Consensus       521 ~~~D~~~l~~~~~~~l  536 (765)
                      ...|++++...+.+++
T Consensus       205 ~~~DvwslG~~l~el~  220 (282)
T cd06636         205 YRSDIWSLGITAIEMA  220 (282)
T ss_pred             cccchhHHHHHHHHHH
Confidence            5679999887666554

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.30  E-value=3.1e-11  Score=124.74  Aligned_cols=186  Identities=18%  Similarity=0.127  Sum_probs=117.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++||.|++|+||+|..  +|..|++|+........                                         ..-+
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------------~~~~   45 (267)
T cd06610           7 EVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQT-----------------------------------------SVDE   45 (267)
T ss_pred             eeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcch-----------------------------------------HHHH
Confidence            6799999999999998  68999999873211100                                         0012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceee--eccCCCeEEEEeecCCCChhhhhhhhh--cCCCHHHHHHHHH--HHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDE--LGVDRKRLGRYAV--ESYLEQI  450 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy--~e~st~~vLVMEyieG~~L~d~~~l~~--~g~d~~~ia~~li--~~~L~qi  450 (765)
                      +.+|+..+..+    . ++++  +.++  .......+++|||++|.+|.+......  ..++...+...+.  -..+..+
T Consensus        46 ~~~e~~~l~~l----~-~~~i--~~~~~~~~~~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~l  118 (267)
T cd06610          46 LRKEVQAMSQC----N-HPNV--VKYYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYL  118 (267)
T ss_pred             HHHHHHHHHhc----C-CCCE--EEEEEEEeeCCEEEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHH
Confidence            33444433332    1 2222  2222  233456799999999999988754321  2344444333322  2336788


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVR  529 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~  529 (765)
                      |..|++|+|++|.||++++  ++.++|+|||++..+........ . ......+...++.++....+ ..+...|++++.
T Consensus       119 h~~~i~h~~l~p~ni~~~~--~~~~~l~df~~~~~~~~~~~~~~-~-~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG  194 (267)
T cd06610         119 HSNGQIHRDIKAGNILLGE--DGSVKIADFGVSASLADGGDRTR-K-VRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFG  194 (267)
T ss_pred             HhCCeecCCCCHHhEEEcC--CCCEEEcccchHHHhccCccccc-c-ccccccCChhhcChHHHccccCcCcccchHhHh
Confidence            9999999999999999986  78999999999887765432210 0 01111234556667766655 566778999988


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       195 ~i~~~l~  201 (267)
T cd06610         195 ITAIELA  201 (267)
T ss_pred             HHHHHHH
Confidence            7665554

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.30  E-value=2.9e-11  Score=127.55  Aligned_cols=188  Identities=15%  Similarity=0.136  Sum_probs=114.6

Q ss_pred             ccccccceeEEEEEEe-----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||.|++|+||+|+.     +++.||||+.+......                            .    .+      .
T Consensus         6 ~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~----------------------------~----~~------~   47 (288)
T cd05583           6 RVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQ----------------------------K----AK------T   47 (288)
T ss_pred             EEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHh----------------------------h----hh------H
Confidence            5799999999999986     36889999874211000                            0    00      0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  451 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~  451 (765)
                      .-.+.+|...+.++.    +++++.-.....+.....++||||++|++|.+.... ...+....+...+  +...+..+|
T Consensus        48 ~~~~~~E~~~l~~~~----~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~-~~~~~~~~~~~~~~ql~~~l~~lH  122 (288)
T cd05583          48 AEHTRTERQVLEAVR----RCPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLYQ-REHFTESEVRVYIAEIVLALDHLH  122 (288)
T ss_pred             HHHHHHHHHHHHhcc----CCcchhhhheeeecCCEEEEEEecCCCCcHHHHHhh-cCCcCHHHHHHHHHHHHHHHHHHH
Confidence            112334444444332    223332222222334557899999999999876432 1223333333322  223467889


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC--CCCCCCHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV--LVPTGDTTAVR  529 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~--~~~~~D~~~l~  529 (765)
                      ..|++|+|+||.||+++.  ++.++++|||++..+.......     .....++..++.++....+.  ..+..|++++.
T Consensus       123 ~~~~~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG  195 (288)
T cd05583         123 QLGIIYRDIKLENILLDS--EGHVVLTDFGLSKEFLAEEEER-----AYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLG  195 (288)
T ss_pred             HCCeeccCCCHHHeEECC--CCCEEEEECccccccccccccc-----cccccCCccccCHHHhcCCCCCCcchhhhHHHH
Confidence            999999999999999986  7899999999987765432110     01123455666777665443  45677999887


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       196 ~il~el~  202 (288)
T cd05583         196 VLTFELL  202 (288)
T ss_pred             HHHHHHH
Confidence            7665544

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.30  E-value=1.9e-11  Score=126.53  Aligned_cols=127  Identities=13%  Similarity=0.091  Sum_probs=82.8

Q ss_pred             cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecce
Q 004254          406 YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM  483 (765)
Q Consensus       406 ~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv  483 (765)
                      ..+..+++|||+.|++|.++............+...  .+...+..+|..|++|+|++|.||++++  ++.++++|||++
T Consensus        68 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~--~~~~kl~dfg~~  145 (262)
T cd05058          68 SEGSPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDE--SFTVKVADFGLA  145 (262)
T ss_pred             CCCCcEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcC--CCcEEECCcccc
Confidence            344579999999999998875432222333333322  2233467889999999999999999986  789999999998


Q ss_pred             eccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          484 GSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       484 ~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ..+..........  .........+++++....+..+...|++++...+.+++
T Consensus       146 ~~~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~  196 (262)
T cd05058         146 RDIYDKEYYSVHN--HTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELM  196 (262)
T ss_pred             ccccCCcceeecc--cccCcCCccccChhHhccCccchHHHHHHHHHHHHHHH
Confidence            8664422100000  00112234566777766666667789999887665543

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.30  E-value=2.1e-11  Score=130.68  Aligned_cols=188  Identities=13%  Similarity=0.126  Sum_probs=111.1

Q ss_pred             CcccccccceeEEEEEEe----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          297 DVEPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       297 d~~PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +...||.|++|.||+|+.    +++.||||+....-..                                          
T Consensus         5 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~------------------------------------------   42 (317)
T cd07868           5 EGCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGIS------------------------------------------   42 (317)
T ss_pred             cccccccCCCeEEEEEEEccCCCCceEEEEEECCCCCc------------------------------------------
Confidence            346899999999999996    3578999977321100                                          


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccC-CCeEEEEeecCCCChhhhhhhhh--------cCCCHHHHHHHH-
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT-TPQILTMEYVPGIKINRIQSLDE--------LGVDRKRLGRYA-  442 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s-t~~vLVMEyieG~~L~d~~~l~~--------~g~d~~~ia~~l-  442 (765)
                        .+..+|++.+.++.    +..-+.+..++.... ...+++|||+++ .+.++.....        ..++...+...+ 
T Consensus        43 --~~~~~E~~~l~~l~----h~niv~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~  115 (317)
T cd07868          43 --MSACREIALLRELK----HPNVISLQKVFLSHADRKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLY  115 (317)
T ss_pred             --HHHHHHHHHHHhcC----CCCCcceeeeEecCCCcEEEEEEeccCC-CHHHHHHhcccccccCCcccCCHHHHHHHHH
Confidence              01223444444332    222233333333222 345899999987 4555432111        112222222222 


Q ss_pred             -HHHHHHHHHhCCccccCCCCCcEEEee--cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CC
Q 004254          443 -VESYLEQILSHGFFHADPHPGNIAVDD--VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GV  518 (765)
Q Consensus       443 -i~~~L~qi~~~GffHaDpHPGNILV~~--~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~  518 (765)
                       +-..+..+|..|++|+|+||.||++..  ..++.++|+|||++..++..... ...  ..-..++..++++++... ..
T Consensus       116 qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~-~~~--~~~~~~t~~y~aPE~~~~~~~  192 (317)
T cd07868         116 QILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKP-LAD--LDPVVVTFWYRAPELLLGARH  192 (317)
T ss_pred             HHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCcc-ccc--cCCccccccccCCHHHcCCCC
Confidence             223477889999999999999999953  13578999999999876543211 000  001123456777877654 34


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 004254          519 LVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       519 ~~~~~D~~~l~~~~~~~l  536 (765)
                      .+...|++++.-.+.+++
T Consensus       193 ~~~~~DiwslG~il~el~  210 (317)
T cd07868         193 YTKAIDIWAIGCIFAELL  210 (317)
T ss_pred             cCchhhHHHHHHHHHHHH
Confidence            566789999987766554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.30  E-value=2.6e-11  Score=127.02  Aligned_cols=182  Identities=18%  Similarity=0.223  Sum_probs=109.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|+.  +|+.||||+.++.....                                         .+.+
T Consensus         7 ~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------------~~~~   45 (283)
T cd06617           7 EELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQ-----------------------------------------EQKR   45 (283)
T ss_pred             EEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcH-----------------------------------------HHHH
Confidence            5799999999999999  59999999875432211                                         0112


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhh---hhcCCCHHHHHHHHHH--HHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYAVE--SYLEQI  450 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l---~~~g~d~~~ia~~li~--~~L~qi  450 (765)
                      +..|.....+   .. +++++ .+...+ ......+++|||++| .+.++...   ....++...+...+.+  ..+..+
T Consensus        46 ~~~e~~~~~~---~~-~~~~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~l  119 (283)
T cd06617          46 LLMDLDISMR---SV-DCPYTVTFYGAL-FREGDVWICMEVMDT-SLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYL  119 (283)
T ss_pred             HHHHHHHHHH---Hc-CCCCeeeeeEEE-ecCCcEEEEhhhhcc-cHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            2222222111   11 22322 222222 234568999999986 45543321   1122344443333322  336788


Q ss_pred             HhC-CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC----CCCCCCCH
Q 004254          451 LSH-GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG----VLVPTGDT  525 (765)
Q Consensus       451 ~~~-GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG----~~~~~~D~  525 (765)
                      |.. |++|+|+||+||+++.  ++.++++|||++..+.......       ...+...+++++.....    ..++..|+
T Consensus       120 H~~~~i~h~dlkp~nil~~~--~~~~kl~dfg~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~~~~~Di  190 (283)
T cd06617         120 HSKLSVIHRDVKPSNVLINR--NGQVKLCDFGISGYLVDSVAKT-------IDAGCKPYMAPERINPELNQKGYDVKSDV  190 (283)
T ss_pred             hhcCCeecCCCCHHHEEECC--CCCEEEeecccccccccccccc-------cccCCccccChhhcCCcccccccCccccc
Confidence            887 9999999999999986  8899999999988765422110       01233445666665432    23566899


Q ss_pred             HHHHHHHHHHH
Q 004254          526 TAVRRTAQFFL  536 (765)
Q Consensus       526 ~~l~~~~~~~l  536 (765)
                      +++...+.+++
T Consensus       191 ~slG~~l~~l~  201 (283)
T cd06617         191 WSLGITMIELA  201 (283)
T ss_pred             hhhHHHHHHHH
Confidence            99887665554

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.30  E-value=3e-11  Score=127.95  Aligned_cols=181  Identities=14%  Similarity=0.112  Sum_probs=117.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|..  +|+.|++|+.+-..  .                              .    -.+      .
T Consensus        25 ~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~--~------------------------------~----~~~------~   62 (285)
T cd06648          25 VKIGEGSTGIVCIATDKSTGRQVAVKKMDLRK--Q------------------------------Q----RRE------L   62 (285)
T ss_pred             eEeccCCCeEEEEEEECCCCCEEEEEEEeccc--h------------------------------h----HHH------H
Confidence            6899999999999997  58999999752100  0                              0    000      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +.+|..-+..+     +++++.-+.-+.......+++|||++|++|.+....  ...+...+...+.  -..+..+|..|
T Consensus        63 ~~~e~~~l~~~-----~h~~vv~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH~~~  135 (285)
T cd06648          63 LFNEVVIMRDY-----QHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIATVCLAVLKALSFLHAQG  135 (285)
T ss_pred             HHHHHHHHHHc-----CCCChheEEEEEEcCCeEEEEEeccCCCCHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            23333333332     223333333333445678999999999999986533  2344444433332  23367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|++|.||+++.  ++.++|+|||++..+.......      ....+...++.++....+......|++++...+.+
T Consensus       136 i~H~dl~p~Nil~~~--~~~~~l~d~g~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~e  207 (285)
T cd06648         136 VIHRDIKSDSILLTS--DGRVKLSDFGFCAQVSKEVPRR------KSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIE  207 (285)
T ss_pred             eecCCCChhhEEEcC--CCcEEEcccccchhhccCCccc------ccccCCccccCHHHhcCCCCCCcccHHHHHHHHHH
Confidence            999999999999986  8899999999887654332111      01124556777777766666777899999877665


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       208 ll  209 (285)
T cd06648         208 MV  209 (285)
T ss_pred             HH
Confidence            54

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.30  E-value=1.2e-11  Score=130.48  Aligned_cols=183  Identities=14%  Similarity=0.075  Sum_probs=112.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++||+|++|.||+|..  +|+.||||..++......                                         ...
T Consensus        11 ~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~-----------------------------------------~~~   49 (291)
T cd07844          11 DKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGA-----------------------------------------PFT   49 (291)
T ss_pred             EEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCC-----------------------------------------chh
Confidence            7899999999999998  589999998754321110                                         001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|...+..+.     ++++.-..-+.......++||||++| +|.++........+...+...+  +-..+..+|..|
T Consensus        50 ~~~E~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~  123 (291)
T cd07844          50 AIREASLLKDLK-----HANIVTLHDIIHTKKTLTLVFEYLDT-DLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRR  123 (291)
T ss_pred             HHHHHHHHhhCC-----CcceeeEEEEEecCCeEEEEEecCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            223444444432     23333222222334567999999997 6766543222234444443333  233478889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|++|.||++++  ++.++|+|||++...+......- .     ......++++++... .......|++++...+.
T Consensus       124 i~H~dl~p~nil~~~--~~~~kl~dfg~~~~~~~~~~~~~-~-----~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~  195 (291)
T cd07844         124 VLHRDLKPQNLLISE--RGELKLADFGLARAKSVPSKTYS-N-----EVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFY  195 (291)
T ss_pred             eecccCCHHHEEEcC--CCCEEECccccccccCCCCcccc-c-----cccccccCCcHHhhcCcccCcHHHHHHHHHHHH
Confidence            999999999999986  78999999999876542211100 0     011233445555432 33455679998887666


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       196 ~l~  198 (291)
T cd07844         196 EMA  198 (291)
T ss_pred             HHH
Confidence            554

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.30  E-value=2e-11  Score=128.56  Aligned_cols=180  Identities=17%  Similarity=0.240  Sum_probs=108.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|..  +|+.||+|+.+....+.                                   -...+.+|++
T Consensus         7 ~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~-----------------------------------~~~~~~~e~~   51 (286)
T cd06622           7 DELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDES-----------------------------------KFNQIIMELD   51 (286)
T ss_pred             hhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHH-----------------------------------HHHHHHHHHH
Confidence            5799999999999999  59999999774321111                                   0011122222


Q ss_pred             HHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh--hcCCCHHHHHHHHHH--HHHHHH
Q 004254          377 YTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD--ELGVDRKRLGRYAVE--SYLEQI  450 (765)
Q Consensus       377 f~~EA~--Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~--~~g~d~~~ia~~li~--~~L~qi  450 (765)
                      .....+  |+.++...+.             .....++||||++|++|..+....  ...++...+.....+  ..+..+
T Consensus        52 ~l~~~~~~~i~~~~~~~~-------------~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~L  118 (286)
T cd06622          52 ILHKAVSPYIVDFYGAFF-------------IEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFL  118 (286)
T ss_pred             HHHhcCCCcHHhhhhhee-------------cCCeEEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            222111  2222222111             134568999999999998765332  113443333332222  235677


Q ss_pred             Hh-CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC------CCCC
Q 004254          451 LS-HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL------VPTG  523 (765)
Q Consensus       451 ~~-~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~------~~~~  523 (765)
                      |. .|++|+|++|.||+++.  ++.++++|||++..+.......        ..+...+++++....+..      +...
T Consensus       119 H~~~~i~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~~  188 (286)
T cd06622         119 KEEHNIIHRDVKPTNVLVNG--NGQVKLCDFGVSGNLVASLAKT--------NIGCQSYMAPERIKSGGPNQNPTYTVQS  188 (286)
T ss_pred             HhcCCEeeCCCCHHHEEECC--CCCEEEeecCCcccccCCcccc--------CCCccCccCcchhcCCCCCccCCCCccc
Confidence            75 69999999999999986  8899999999987764322111        113344566666544332      4567


Q ss_pred             CHHHHHHHHHHHH
Q 004254          524 DTTAVRRTAQFFL  536 (765)
Q Consensus       524 D~~~l~~~~~~~l  536 (765)
                      |++++...+.+++
T Consensus       189 DiwslG~il~~l~  201 (286)
T cd06622         189 DVWSLGLSILEMA  201 (286)
T ss_pred             chHhHHHHHHHHH
Confidence            9999887665544

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.30  E-value=3.8e-11  Score=126.86  Aligned_cols=183  Identities=15%  Similarity=0.135  Sum_probs=113.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.+|+|++|.||+|..  +|+.||+|+..+.-..                                     ..      +
T Consensus        28 ~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~-------------------------------------~~------~   64 (291)
T cd06639          28 ETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDV-------------------------------------DE------E   64 (291)
T ss_pred             EEeecCCCeEEEEEEECCCCCEEEEEEecccccH-------------------------------------HH------H
Confidence            6899999999999998  5899999987432100                                     00      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCc-cccceeeecc----CCCeEEEEeecCCCChhhhhhh---hhcCCCHHHHHHHH--HHHH
Q 004254          377 YTQEAANAELFASNFKDMDY-VKVPTIFWEY----TTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYA--VESY  446 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~-V~vP~vy~e~----st~~vLVMEyieG~~L~d~~~l---~~~g~d~~~ia~~l--i~~~  446 (765)
                      +..|...+.++.    ++++ +.+...+...    ....++||||++|++|.++...   .........+...+  +-..
T Consensus        65 ~~~e~~~l~~l~----~h~ni~~~~~~~~~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~a  140 (291)
T cd06639          65 IEAEYNILQSLP----NHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLG  140 (291)
T ss_pred             HHHHHHHHHHhc----CCCCeEEEEEEEEeccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Confidence            223333333332    2222 2222222211    2357999999999999886531   11223333332222  2234


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-----CCC
Q 004254          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-----LVP  521 (765)
Q Consensus       447 L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~-----~~~  521 (765)
                      ++.+|..|++|+|++|+||+++.  ++.++++|||.+..+.......      ....+...++.++....+.     .+.
T Consensus       141 l~~lH~~~ivH~dlkp~nili~~--~~~~kl~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~~  212 (291)
T cd06639         141 LQHLHNNRIIHRDVKGNNILLTT--EGGVKLVDFGVSAQLTSTRLRR------NTSVGTPFWMAPEVIACEQQYDYSYDA  212 (291)
T ss_pred             HHHHHhCCeeccCCCHHHEEEcC--CCCEEEeecccchhcccccccc------cCccCCccccChhhhcCCCCcccccCC
Confidence            68889999999999999999986  7899999999988765432111      0112445566777665432     356


Q ss_pred             CCCHHHHHHHHHHHH
Q 004254          522 TGDTTAVRRTAQFFL  536 (765)
Q Consensus       522 ~~D~~~l~~~~~~~l  536 (765)
                      ..|++++...+.+++
T Consensus       213 ~~Di~slGvi~~el~  227 (291)
T cd06639         213 RCDVWSLGITAIELG  227 (291)
T ss_pred             ccchHHHHHHHHHHh
Confidence            789999887665543

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.30  E-value=2.3e-11  Score=125.94  Aligned_cols=183  Identities=12%  Similarity=0.052  Sum_probs=115.6

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||.|++|.||+|.. +++.|++|+.+......                                    .      -++
T Consensus        12 ~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~------------------------------------~------~~~   49 (261)
T cd05148          12 RKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLK------------------------------------Q------QDF   49 (261)
T ss_pred             hhhccCCCccEEEeEecCCCcEEEEeccccchhh------------------------------------H------HHH
Confidence            5789999999999999 68999999874321100                                    0      022


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      ..|...+..+.     ++++.-..-+.......+++|||++|++|.+...... ...+...+...+.  -..+..+|..|
T Consensus        50 ~~e~~~l~~l~-----~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~  124 (261)
T cd05148          50 QKEVQALKRLR-----HKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQN  124 (261)
T ss_pred             HHHHHHHhcCC-----CcchhheeeeEecCCCeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33333333321     1222111112233456799999999999998754321 2234333333322  23367889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|++|.||++++  ++.++++|||.+..+.......      .-......++.++....+......|++++...+.+
T Consensus       125 i~h~dl~~~nilv~~--~~~~kl~d~g~~~~~~~~~~~~------~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~  196 (261)
T cd05148         125 SIHRDLAARNILVGE--DLVCKVADFGLARLIKEDVYLS------SDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYE  196 (261)
T ss_pred             eeccccCcceEEEcC--CceEEEccccchhhcCCccccc------cCCCCceEecCHHHHccCCCCchhhHHHHHHHHHH
Confidence            999999999999986  8899999999998765432110      00112234566777766777778899998876655


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       197 l~  198 (261)
T cd05148         197 MF  198 (261)
T ss_pred             HH
Confidence            44

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.30  E-value=2.5e-11  Score=127.56  Aligned_cols=180  Identities=14%  Similarity=0.129  Sum_probs=110.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|..  +|+.||+|+..+....                                           .-+
T Consensus        24 ~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~-------------------------------------------~~~   60 (286)
T cd06638          24 ETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDI-------------------------------------------DEE   60 (286)
T ss_pred             eeeccCCCcEEEEEEECCCCceeEEEeeccccch-------------------------------------------HHH
Confidence            6899999999999999  5899999986431100                                           001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec-------cCCCeEEEEeecCCCChhhhhhh--h-hcCCCHHHHHHHH--HH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWE-------YTTPQILTMEYVPGIKINRIQSL--D-ELGVDRKRLGRYA--VE  444 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e-------~st~~vLVMEyieG~~L~d~~~l--~-~~g~d~~~ia~~l--i~  444 (765)
                      +.+|...+.++.    ++++  +++++..       .....+++|||++|++|.++...  . ....+...+...+  +-
T Consensus        61 ~~~e~~~l~~l~----~h~~--i~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~  134 (286)
T cd06638          61 IEAEYNILKALS----DHPN--VVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEAL  134 (286)
T ss_pred             HHHHHHHHHHHh----cCCC--eeeeeeeeeecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHH
Confidence            223333333332    1222  2333221       12346999999999999886431  1 1123322222222  22


Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CCC
Q 004254          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GVL  519 (765)
Q Consensus       445 ~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-----G~~  519 (765)
                      ..+..+|..|++|+|++|+||++++  ++.++++|||++..+.......      ....++..+++++....     +..
T Consensus       135 ~~l~~lH~~~i~H~dlkp~nili~~--~~~~kl~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~  206 (286)
T cd06638         135 MGLQHLHVNKTIHRDVKGNNILLTT--EGGVKLVDFGVSAQLTSTRLRR------NTSVGTPFWMAPEVIACEQQLDSTY  206 (286)
T ss_pred             HHHHHHHhCCccccCCCHHhEEECC--CCCEEEccCCceeecccCCCcc------ccccCCCcccChhhhchhhhccccc
Confidence            3467889999999999999999986  7889999999988765432110      01124555666766532     234


Q ss_pred             CCCCCHHHHHHHHHHH
Q 004254          520 VPTGDTTAVRRTAQFF  535 (765)
Q Consensus       520 ~~~~D~~~l~~~~~~~  535 (765)
                      +...|++++...+.++
T Consensus       207 ~~~~Dv~slGvi~~el  222 (286)
T cd06638         207 DARCDVWSLGITAIEL  222 (286)
T ss_pred             cchhhhhhHHHHHHHH
Confidence            5677998887655444

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=99.30  E-value=3.8e-11  Score=123.70  Aligned_cols=100  Identities=29%  Similarity=0.578  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHH-hcCC--CCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhC
Q 004254          377 YTQEAANAELFAS-NFKD--MDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~-~f~~--~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~  453 (765)
                      +.++..|+.++.+ -|..  .+.+..-+..+.+++..+|+||||+|.++++...+.      +.++..+. ..++++|.+
T Consensus        82 ~~~l~~~~~~i~~~g~~~~~~~yl~~ekk~~~~~~~~~ll~EYIeG~~l~d~~~i~------e~~~~ki~-~~ikqlH~~  154 (229)
T PF06176_consen   82 YSRLINNTDKIRNEGFTEPADPYLAAEKKIFRYTSSYVLLMEYIEGVELNDIEDID------EDLAEKIV-EAIKQLHKH  154 (229)
T ss_pred             HHHHHHHHHHHHHcCccccccceeeeeeeeccceeEEEEEEEEecCeecccchhcC------HHHHHHHH-HHHHHHHHc
Confidence            3444555555543 2322  223344455557788889999999999999875432      23444433 568999999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceecc
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  486 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L  486 (765)
                      |++|+||||||++++   ++.+++|||+..+..
T Consensus       155 G~~HGD~hpgNFlv~---~~~i~iID~~~k~~~  184 (229)
T PF06176_consen  155 GFYHGDPHPGNFLVS---NNGIRIIDTQGKRMS  184 (229)
T ss_pred             CCccCCCCcCcEEEE---CCcEEEEECcccccc
Confidence            999999999999997   566999999988764

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.30  E-value=2.5e-11  Score=126.77  Aligned_cols=184  Identities=16%  Similarity=0.128  Sum_probs=117.1

Q ss_pred             ccccccceeEEEEEEeC-------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      ..||.|++|.||+|...       +..||+|....+...                                         
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~-----------------------------------------   50 (277)
T cd05032          12 RELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASM-----------------------------------------   50 (277)
T ss_pred             eEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCH-----------------------------------------
Confidence            67999999999999983       268999986432110                                         


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhc---------CCCHHHHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDEL---------GVDRKRLGR  440 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~---------g~d~~~ia~  440 (765)
                      .....+.+|+..+..+.     ++++  .+++.  ......+++|||++|++|.++......         ..+...+..
T Consensus        51 ~~~~~~~~e~~~l~~~~-----~~~i--~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~  123 (277)
T cd05032          51 RERIEFLNEASVMKEFN-----CHHV--VRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQ  123 (277)
T ss_pred             HHHHHHHHHHHHHHhCC-----CCce--eEEEEEEcCCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHH
Confidence            01123455555444432     2222  22322  334567999999999999886532111         122233333


Q ss_pred             HH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004254          441 YA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  518 (765)
Q Consensus       441 ~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~  518 (765)
                      .+  +-..+..+|..|++|+|++|.||+++.  ++.++|+|||++..+........    .+.......+++++...-+.
T Consensus       124 ~~~~i~~~l~~lH~~~i~H~di~p~nill~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~  197 (277)
T cd05032         124 MAAEIADGMAYLAAKKFVHRDLAARNCMVAE--DLTVKIGDFGMTRDIYETDYYRK----GGKGLLPVRWMAPESLKDGV  197 (277)
T ss_pred             HHHHHHHHHHHHHhCCccccccChheEEEcC--CCCEEECCcccchhhccCccccc----CCCCCccccccCHHHHhcCC
Confidence            22  223467889999999999999999986  88999999999876644321000    01111234567777777777


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 004254          519 LVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       519 ~~~~~D~~~l~~~~~~~l  536 (765)
                      .++..|++++.-.+.+++
T Consensus       198 ~~~~~Di~slG~il~el~  215 (277)
T cd05032         198 FTTKSDVWSFGVVLWEMA  215 (277)
T ss_pred             CCcccchHHHHHHHHHhh
Confidence            888899999887665543

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.29  E-value=5.8e-11  Score=127.75  Aligned_cols=193  Identities=18%  Similarity=0.191  Sum_probs=118.8

Q ss_pred             hCCChhhhhcccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHH
Q 004254          285 LGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (765)
Q Consensus       285 lG~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~  362 (765)
                      ++.+++++|..+.  .+|.|++|.||+|+.  +|+.|+||+........                             . 
T Consensus        15 ~~~~~~~~~~~~~--~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~-----------------------------~-   62 (313)
T cd06633          15 YKDDPEEIFVGLH--EIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQT-----------------------------N-   62 (313)
T ss_pred             ccCCHHHHhhcce--eeccCCCeEEEEEEECCCCcEEEEEEEeccccCc-----------------------------h-
Confidence            3467777766544  499999999999998  68999999874321100                             0 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH
Q 004254          363 IYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA  442 (765)
Q Consensus       363 i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l  442 (765)
                        +       ...++..|...+..+.    +..-+.+..++ ......+++|||+.| .+.+........++...+...+
T Consensus        63 --~-------~~~~~~~E~~~l~~l~----h~~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~l~~~~~~l~~~~~~~~~  127 (313)
T cd06633          63 --E-------KWQDIIKEVKFLQQLK----HPNTIEYKGCY-LKEHTAWLVMEYCLG-SASDLLEVHKKPLQEVEIAAIT  127 (313)
T ss_pred             --H-------HHHHHHHHHHHHHhCC----CCCCccEEEEE-EeCCEEEEEEecCCC-CHHHHHHhcCCCCCHHHHHHHH
Confidence              0       0012334444444432    22222233333 223557999999987 4444432222234444443332


Q ss_pred             --HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cC
Q 004254          443 --VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MG  517 (765)
Q Consensus       443 --i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~---lG  517 (765)
                        +-..+..+|..|++|+|++|+||++++  ++.++++|||++....+...          ..++..++++++..   -+
T Consensus       128 ~qi~~al~~LH~~gi~H~dl~p~nili~~--~~~~kL~dfg~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~~  195 (313)
T cd06633         128 HGALQGLAYLHSHNMIHRDIKAGNILLTE--PGQVKLADFGSASKSSPANS----------FVGTPYWMAPEVILAMDEG  195 (313)
T ss_pred             HHHHHHHHHHHHCCeecCCCChhhEEECC--CCCEEEeecCCCcccCCCCC----------ccccccccChhhccccCCC
Confidence              233468889999999999999999985  78999999999865433211          12345567777653   24


Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q 004254          518 VLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       518 ~~~~~~D~~~l~~~~~~~l  536 (765)
                      ......|++++...+.+++
T Consensus       196 ~~~~~sDv~slGvil~el~  214 (313)
T cd06633         196 QYDGKVDVWSLGITCIELA  214 (313)
T ss_pred             CCCchhhHHHHHHHHHHHH
Confidence            4566779998886655443

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.29  E-value=2.7e-11  Score=127.95  Aligned_cols=188  Identities=16%  Similarity=0.166  Sum_probs=114.5

Q ss_pred             ccccccceeEEEEEEe-----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||.|++|.||.|+.     +|+.||+|+.+......                            .    ....+    
T Consensus         6 ~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~----------------------------~----~~~~~----   49 (290)
T cd05613           6 KVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQ----------------------------K----AKTTE----   49 (290)
T ss_pred             eeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhh----------------------------c----chHHH----
Confidence            5689999999999987     58999999874321100                            0    00011    


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  451 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~  451 (765)
                        .+.+|.+.+.++.    +++.|.-.....+.....+++|||++|++|.+..... .......+...+  +...+..+|
T Consensus        50 --~~~~e~~~l~~l~----~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~al~~lH  122 (290)
T cd05613          50 --HTRTERQVLEHIR----QSPFLVTLHYAFQTDTKLHLILDYINGGELFTHLSQR-ERFKEQEVQIYSGEIVLALEHLH  122 (290)
T ss_pred             --HHHHHHHHHHhcc----cCCChhceeeEeecCCeEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH
Confidence              1223333333332    2232222211222334568999999999998864322 234444443332  334478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCCHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG--VLVPTGDTTAVR  529 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG--~~~~~~D~~~l~  529 (765)
                      ..|++|+|++|.||+++.  +++++|+|||++..+.........     ...+...++.++...-+  ...+..|++++.
T Consensus       123 ~~~i~H~dl~p~nil~~~--~~~~kl~dfg~~~~~~~~~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG  195 (290)
T cd05613         123 KLGIIYRDIKLENILLDS--NGHVVLTDFGLSKEFHEDEVERAY-----SFCGTIEYMAPDIVRGGDGGHDKAVDWWSMG  195 (290)
T ss_pred             hCCeeccCCCHHHeEECC--CCCEEEeeCccceecccccccccc-----cccCCcccCChhhccCCCCCCCccccHHHHH
Confidence            999999999999999986  889999999999877543211110     11234455666665432  345668999988


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+..++
T Consensus       196 ~~l~~ll  202 (290)
T cd05613         196 VLMYELL  202 (290)
T ss_pred             HHHHHHh
Confidence            7665544

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.29  E-value=1.9e-11  Score=143.15  Aligned_cols=124  Identities=15%  Similarity=0.141  Sum_probs=78.2

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhhcCC-----------------CH-HHHHHHH---HHHHHHHHHhCCccccCCCCCcE
Q 004254          407 TTPQILTMEYVPGIKINRIQSLDELGV-----------------DR-KRLGRYA---VESYLEQILSHGFFHADPHPGNI  465 (765)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~~g~-----------------d~-~~ia~~l---i~~~L~qi~~~GffHaDpHPGNI  465 (765)
                      ....+|||||+++++|.++........                 .+ ..++..+   +-..+.++|..|++|+|+||.||
T Consensus       207 ~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDLKP~NI  286 (566)
T PLN03225        207 EDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVKPQNI  286 (566)
T ss_pred             CCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcCCHHHE
Confidence            456799999999999988653221100                 00 1111111   22347889999999999999999


Q ss_pred             EEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC----------------------CCC
Q 004254          466 AVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV----------------------PTG  523 (765)
Q Consensus       466 LV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~----------------------~~~  523 (765)
                      |+++ .++.++|+|||++..+.......     ......++.+++++...+....                      ...
T Consensus       287 Ll~~-~~~~~KL~DFGlA~~l~~~~~~~-----~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~  360 (566)
T PLN03225        287 IFSE-GSGSFKIIDLGAAADLRVGINYI-----PKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRF  360 (566)
T ss_pred             EEeC-CCCcEEEEeCCCccccccccccC-----CcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCc
Confidence            9984 35789999999998654321100     0112345667777755433222                      234


Q ss_pred             CHHHHHHHHHHHH
Q 004254          524 DTTAVRRTAQFFL  536 (765)
Q Consensus       524 D~~~l~~~~~~~l  536 (765)
                      |++++.-.+.+++
T Consensus       361 DVwSlGviL~el~  373 (566)
T PLN03225        361 DIYSAGLIFLQMA  373 (566)
T ss_pred             ccHHHHHHHHHHH
Confidence            9999987766654

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.29  E-value=3.6e-11  Score=128.52  Aligned_cols=181  Identities=20%  Similarity=0.187  Sum_probs=112.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||+|+........                                 .+.      .-+
T Consensus        21 ~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~---------------------------------~~~------~~~   61 (307)
T cd06607          21 REIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQS---------------------------------NEK------WQD   61 (307)
T ss_pred             eeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCc---------------------------------HHH------HHH
Confidence            5699999999999998  58999999773221100                                 000      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|...+..+    .+..-+.+..++ ......++||||++|. +.+.........+...+...+  +-..+..+|..|
T Consensus        62 ~~~Ei~~l~~l----~h~niv~~~~~~-~~~~~~~lv~e~~~g~-l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~~  135 (307)
T cd06607          62 IIKEVRFLQQL----RHPNTIEYKGCY-LREHTAWLVMEYCLGS-ASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHE  135 (307)
T ss_pred             HHHHHHHHHhC----CCCCEEEEEEEE-EeCCeEEEEHHhhCCC-HHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34444433332    222222233333 2345679999999974 444332222234444433332  334468889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCCHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRRT  531 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~---lG~~~~~~D~~~l~~~  531 (765)
                      ++|+|++|+||++++  ++.++|+|||++...++...          ..+...+++++...   .+...+..|++++...
T Consensus       136 i~H~dl~p~nIl~~~--~~~~kL~dfg~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~i  203 (307)
T cd06607         136 RIHRDIKAGNILLTE--PGTVKLADFGSASLVSPANS----------FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT  203 (307)
T ss_pred             ceecCCCcccEEECC--CCCEEEeecCcceecCCCCC----------ccCCccccCceeeeccCCCCCCcccchHHHHHH
Confidence            999999999999986  88999999999887654321          12344566666542   3455667899998876


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       204 l~el~  208 (307)
T cd06607         204 CIELA  208 (307)
T ss_pred             HHHHH
Confidence            65544

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.29  E-value=2.4e-11  Score=124.99  Aligned_cols=185  Identities=15%  Similarity=0.109  Sum_probs=118.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|.+|.||+|..  +++.||||.....-..                                  .+..      -.
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~----------------------------------~~~~------~~   45 (256)
T cd08220           6 RVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMT----------------------------------KDER------LA   45 (256)
T ss_pred             EEecccCceEEEEEEEcCCCcEEEEEEEeccccc----------------------------------cHHH------HH
Confidence            6799999999999998  5899999987332100                                  0001      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      +.+|++.+.++.     ++++....-+.......+++|||++|++|.++..... ...+...+...+.  -..+..+|..
T Consensus        46 ~~~e~~~l~~~~-----~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~  120 (256)
T cd08220          46 AQNECQVLKLLS-----HPNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTK  120 (256)
T ss_pred             HHHHHHHHhhCC-----CCchhheeeeEecCCEEEEEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            344444444432     2222221112223456799999999999998754322 2244444443322  2346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|+||++++ .++.++++|||++..+.......       ...+...+++++.......+...|++++...+.
T Consensus       121 ~i~h~dl~~~nil~~~-~~~~~~l~d~~~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~  192 (256)
T cd08220         121 LILHRDLKTQNILLDK-HKMVVKIGDFGISKILSSKSKAY-------TVVGTPCYISPELCEGKPYNQKSDIWALGCVLY  192 (256)
T ss_pred             CeecCCCCHHHEEEcC-CCCEEEEccCCCceecCCCcccc-------ccccCCcccCchhccCCCCCcccchHHHHHHHH
Confidence            9999999999999975 34568999999998876532211       012344566777776666677789999887665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       193 ~l~  195 (256)
T cd08220         193 ELA  195 (256)
T ss_pred             HHH
Confidence            544

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.29  E-value=4.6e-11  Score=125.49  Aligned_cols=117  Identities=16%  Similarity=0.198  Sum_probs=86.1

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCC-cEEEEeecce
Q 004254          407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGG-RLIFYDFGMM  483 (765)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~GffHaDpHPGNILV~~~~~g-~l~LiDFGlv  483 (765)
                      ....++||||++|++|.++..... .++...+...+.+  ..+..+|..|++|+|++|.||++++  ++ +++++|||++
T Consensus        81 ~~~~~iv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~--~~~~~~l~dfg~~  157 (267)
T PHA03390         81 LKGHVLIMDYIKDGDLFDLLKKEG-KLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDR--AKDRIYLCDYGLC  157 (267)
T ss_pred             CCeeEEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeC--CCCeEEEecCccc
Confidence            346799999999999988654322 3454444443332  3368899999999999999999986  55 8999999998


Q ss_pred             eccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          484 GSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       484 ~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ..++....          ..+...+++++....+...+..|++++...+.+++
T Consensus       158 ~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~  200 (267)
T PHA03390        158 KIIGTPSC----------YDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELL  200 (267)
T ss_pred             eecCCCcc----------CCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHH
Confidence            87764321          23456677888887777777889999887665554

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.29  E-value=2.5e-11  Score=125.86  Aligned_cols=185  Identities=14%  Similarity=0.105  Sum_probs=114.4

Q ss_pred             cccccceeEEEEEEe----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       300 PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .||+|++|.||+|.+    ++..||||+.+......                                  ..      .-
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~----------------------------------~~------~~   41 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDP----------------------------------AL------KD   41 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcH----------------------------------HH------HH
Confidence            489999999999975    47899999874332110                                  00      01


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      ++..|..-+.++     +++++.-..-+.+ ....+++|||+++++|.++.... ...+...+...+  +-..+..+|..
T Consensus        42 ~~~~e~~~l~~l-----~h~~i~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~al~~lH~~  114 (257)
T cd05116          42 ELLREANVMQQL-----DNPYIVRMIGICE-AESWMLVMELAELGPLNKFLQKN-KHVTEKNITELVHQVSMGMKYLEET  114 (257)
T ss_pred             HHHHHHHHHHhC-----CCCCcceEEEEEc-CCCcEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            233344333332     2233222111111 34568999999999998865322 223433333332  23346889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||.||++++  ++.++++|||++..+..........   ........+++++....+..+...|++++.-.+.
T Consensus       115 ~i~H~dlkp~nill~~--~~~~kl~Dfg~~~~~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~  189 (257)
T cd05116         115 NFVHRDLAARNVLLVT--QHYAKISDFGLSKALGADENYYKAK---THGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMW  189 (257)
T ss_pred             CEeecccchhhEEEcC--CCeEEECCCccccccCCCCCeeeec---CCCCCCccccCHhHhccCCcCchhHHHHHHHHHH
Confidence            9999999999999986  7899999999988765432110000   0001124566777776666777889999887665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       190 el~  192 (257)
T cd05116         190 EAF  192 (257)
T ss_pred             HHH
Confidence            554

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.29  E-value=2e-11  Score=130.58  Aligned_cols=187  Identities=14%  Similarity=0.088  Sum_probs=119.3

Q ss_pred             cccccccceeEEEEEEe-------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      .+.||.|++|+||+|+.       .+..||||+.+......                                   ..  
T Consensus        40 ~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~--   82 (302)
T cd05055          40 GKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSS-----------------------------------ER--   82 (302)
T ss_pred             cceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChH-----------------------------------HH--
Confidence            36899999999999975       24689999875432211                                   00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhc-CCCHHHHHHHH--HHHH
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRYA--VESY  446 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~-g~d~~~ia~~l--i~~~  446 (765)
                          -++.+|...+.++.    +++++ .+.. +.......+++|||+.|++|.++...... ..+...+....  +...
T Consensus        83 ----~~~~~E~~~l~~l~----~h~~iv~~~~-~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~  153 (302)
T cd05055          83 ----EALMSELKIMSHLG----NHENIVNLLG-ACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKG  153 (302)
T ss_pred             ----HHHHHHHHHHHhcc----CCCCcceEEE-EEecCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence                13445555554442    22222 2222 22334567999999999999886542221 24444443333  2334


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004254          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (765)
Q Consensus       447 L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~  526 (765)
                      +..+|..|++|+|++|+||++++  ++.++++|||++..+........    .+.......+++++....+..++..|++
T Consensus       154 l~~lH~~~ivH~dlkp~Nil~~~--~~~~~l~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Diw  227 (302)
T cd05055         154 MAFLASKNCIHRDLAARNVLLTH--GKIVKICDFGLARDIMNDSNYVV----KGNARLPVKWMAPESIFNCVYTFESDVW  227 (302)
T ss_pred             HHHHHHCCeehhhhccceEEEcC--CCeEEECCCcccccccCCCceee----cCCCCcccccCCHhhhccCCCCcHhHHH
Confidence            67889999999999999999985  78899999999887654321100    1111223457778877777777788999


Q ss_pred             HHHHHHHHHH
Q 004254          527 AVRRTAQFFL  536 (765)
Q Consensus       527 ~l~~~~~~~l  536 (765)
                      ++.-.+.+++
T Consensus       228 slGvil~el~  237 (302)
T cd05055         228 SYGILLWEIF  237 (302)
T ss_pred             HHHHHHHHHH
Confidence            9886655543

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.29  E-value=2.8e-11  Score=136.00  Aligned_cols=85  Identities=14%  Similarity=0.066  Sum_probs=59.5

Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004254          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (765)
Q Consensus       446 ~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~  525 (765)
                      .+..+|..|++|+|++|.||++++  ++.++++|||++..+........    .........+++++....+...+..|+
T Consensus       251 aL~~LH~~~ivHrdlkp~NiLl~~--~~~~kL~DfGla~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Dv  324 (401)
T cd05107         251 GMEFLASKNCVHRDLAARNVLICE--GKLVKICDFGLARDIMRDSNYIS----KGSTFLPLKWMAPESIFNNLYTTLSDV  324 (401)
T ss_pred             HHHHHhcCCcCcccCCcceEEEeC--CCEEEEEecCcceeccccccccc----CCCcCCCCceeChHHhcCCCCCcHhHH
Confidence            467789999999999999999986  78999999999886533211000    000112345677777777777778899


Q ss_pred             HHHHHHHHHHH
Q 004254          526 TAVRRTAQFFL  536 (765)
Q Consensus       526 ~~l~~~~~~~l  536 (765)
                      +++...+.+++
T Consensus       325 wslGvil~e~l  335 (401)
T cd05107         325 WSFGILLWEIF  335 (401)
T ss_pred             HHHHHHHHHHH
Confidence            99876655443

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.29  E-value=1.7e-11  Score=131.01  Aligned_cols=184  Identities=12%  Similarity=0.125  Sum_probs=113.6

Q ss_pred             ccccccceeEEEEEEe--CCe----EEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~----~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +.||+|++|+||+|++  +|+    .||+|+..+.....                                         
T Consensus        13 ~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------------   51 (303)
T cd05110          13 KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPK-----------------------------------------   51 (303)
T ss_pred             cccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHH-----------------------------------------
Confidence            6799999999999998  454    57888764432111                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQ  449 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~-V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~q  449 (765)
                      ....+.+|...+..+.     +++ +.+...+  .....+++|||++++.+.+.........+...+....  +...+..
T Consensus        52 ~~~~~~~e~~~~~~l~-----h~niv~~~~~~--~~~~~~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~  124 (303)
T cd05110          52 ANVEFMDEALIMASMD-----HPHLVRLLGVC--LSPTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMY  124 (303)
T ss_pred             HHHHHHHHHHHHHhCC-----CCCcccEEEEE--cCCCceeeehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            0112444554444332     233 2222222  2345679999999999988654332233433333222  2334678


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..|++|+|+||.||++++  ++.++|+|||++..+.......-..    .......++.++.......+...|++++.
T Consensus       125 LH~~~ivH~dikp~Nill~~--~~~~kL~Dfg~~~~~~~~~~~~~~~----~~~~~~~y~~PE~~~~~~~~~~~DiwslG  198 (303)
T cd05110         125 LEERRLVHRDLAARNVLVKS--PNHVKITDFGLARLLEGDEKEYNAD----GGKMPIKWMALECIHYRKFTHQSDVWSYG  198 (303)
T ss_pred             HhhcCeeccccccceeeecC--CCceEEccccccccccCcccccccC----CCccccccCCHHHhccCCCChHHHHHHHH
Confidence            89999999999999999975  7899999999998775432211000    00112345666666655566778999988


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       199 ~~l~el~  205 (303)
T cd05110         199 VTIWELM  205 (303)
T ss_pred             HHHHHHH
Confidence            6665543

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.28  E-value=2.3e-11  Score=138.05  Aligned_cols=119  Identities=17%  Similarity=0.145  Sum_probs=76.9

Q ss_pred             eEEEEeecCCCChhhhhh-h--hhcCCCHHHHHHH--HHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeeccee
Q 004254          410 QILTMEYVPGIKINRIQS-L--DELGVDRKRLGRY--AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  484 (765)
Q Consensus       410 ~vLVMEyieG~~L~d~~~-l--~~~g~d~~~ia~~--li~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~  484 (765)
                      .++||||++|. +.+... .  ....+....+...  .+-..+..+|..|++|+|+||+||+++. .++.++|+|||++.
T Consensus       142 l~lvmE~~~~~-l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~-~~~~vkL~DFGla~  219 (440)
T PTZ00036        142 LNVVMEFIPQT-VHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDP-NTHTLKLCDFGSAK  219 (440)
T ss_pred             EEEEEecCCcc-HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcC-CCCceeeeccccch
Confidence            46899999974 444321 1  1122333332222  2334578899999999999999999985 34579999999998


Q ss_pred             ccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHHHHHH
Q 004254          485 SISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       485 ~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~~~~l~  537 (765)
                      .+.......       -..+++.++++++... ...+...|++++...+.+++.
T Consensus       220 ~~~~~~~~~-------~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ellt  266 (440)
T PTZ00036        220 NLLAGQRSV-------SYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMIL  266 (440)
T ss_pred             hccCCCCcc-------cCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHh
Confidence            775432210       0123566788887643 235667899999877766653

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.28  E-value=5.1e-11  Score=127.95  Aligned_cols=186  Identities=17%  Similarity=0.132  Sum_probs=116.3

Q ss_pred             cccccccceeEEEEEEe---------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL---------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l---------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (765)
                      .+.||.|++|.||+|+.         ++..||+|+.+......                                  +  
T Consensus        17 ~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~----------------------------------~--   60 (314)
T cd05099          17 GKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDK----------------------------------D--   60 (314)
T ss_pred             eeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChH----------------------------------H--
Confidence            36899999999999975         24579999875432111                                  0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhh---------------c
Q 004254          369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE---------------L  431 (765)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~---------------~  431 (765)
                           .-++..|.+-+..+    .++++|  .+.+.  ......+++|||++|++|.++.....               .
T Consensus        61 -----~~~~~~E~~~l~~l----~~h~~i--v~~~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~  129 (314)
T cd05099          61 -----LADLISEMELMKLI----GKHKNI--INLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEE  129 (314)
T ss_pred             -----HHHHHHHHHHHHhc----cCCCCe--eeEEEEEccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCccc
Confidence                 01233343323222    122332  22222  23455799999999999988653221               1


Q ss_pred             CCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHH
Q 004254          432 GVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV  509 (765)
Q Consensus       432 g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i  509 (765)
                      ..+...+...+  +-..+..+|..|++|+|++|+||++++  ++.++|+|||.+..+........  .  ........++
T Consensus       130 ~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~--~~~~kL~Dfg~~~~~~~~~~~~~--~--~~~~~~~~y~  203 (314)
T cd05099         130 QLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVTE--DNVMKIADFGLARGVHDIDYYKK--T--SNGRLPVKWM  203 (314)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEEEcC--CCcEEEccccccccccccccccc--c--ccCCCCcccc
Confidence            12333332222  233467889999999999999999986  88999999999987754321110  0  0011224577


Q ss_pred             HHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          510 LQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       510 ~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +++....+..+...|++++...+.+++
T Consensus       204 aPE~~~~~~~~~~~DiwslG~~l~el~  230 (314)
T cd05099         204 APEALFDRVYTHQSDVWSFGILMWEIF  230 (314)
T ss_pred             CHHHHccCCcCccchhhHHHHHHHHHH
Confidence            888877777778889999987665543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.28  E-value=9e-11  Score=125.84  Aligned_cols=193  Identities=18%  Similarity=0.198  Sum_probs=120.3

Q ss_pred             hCCChhhhhcccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHH
Q 004254          285 LGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (765)
Q Consensus       285 lG~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~  362 (765)
                      +...+++.|+.  ...+|.|++|+||+|+.  +|+.|+||..+..-...                               
T Consensus         9 ~~~~~~~~~~~--~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~-------------------------------   55 (308)
T cd06634           9 FKDDPEKLFSD--LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS-------------------------------   55 (308)
T ss_pred             hcCCcHHHHHH--HHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccC-------------------------------
Confidence            34445555543  35799999999999998  58999999774311000                               


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH
Q 004254          363 IYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA  442 (765)
Q Consensus       363 i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l  442 (765)
                        ++      ..-++..|.+.+..+.    +...+.+...+ ......++||||+.| ++.+........++...+...+
T Consensus        56 --~~------~~~~~~~e~~~l~~l~----h~~i~~~~~~~-~~~~~~~lv~e~~~~-~l~~~~~~~~~~l~~~~~~~~~  121 (308)
T cd06634          56 --NE------KWQDIIKEVRFLQKLR----HPNTIQYRGCY-LREHTAWLVMEYCLG-SASDLLEVHKKPLQEVEIAAVT  121 (308)
T ss_pred             --hH------HHHHHHHHHHHHHhCC----CCCcccEEEEE-EcCCeeEEEEEccCC-CHHHHHHHcCCCCCHHHHHHHH
Confidence              00      0112344444444432    22222222222 334567999999986 5655443333334545444433


Q ss_pred             H--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cC
Q 004254          443 V--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MG  517 (765)
Q Consensus       443 i--~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~---lG  517 (765)
                      .  -..+..+|..|++|+|++|.||+++.  ++.++++|||++..+.+...          ..++..+++++...   .+
T Consensus       122 ~~l~~~l~~LH~~~i~H~dl~p~nil~~~--~~~~kl~dfg~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~~  189 (308)
T cd06634         122 HGALQGLAYLHSHNMIHRDVKAGNILLSE--PGLVKLGDFGSASIMAPANX----------FVGTPYWMAPEVILAMDEG  189 (308)
T ss_pred             HHHHHHHHHHHhCCcccCCCCHHhEEECC--CCcEEECCcccceeecCccc----------ccCCccccCHHHHhhcccC
Confidence            2  23468889999999999999999986  78999999999887665321          12345566777653   24


Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q 004254          518 VLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       518 ~~~~~~D~~~l~~~~~~~l  536 (765)
                      ..++..|++++...+.+++
T Consensus       190 ~~~~~~Di~slG~il~el~  208 (308)
T cd06634         190 QYDGKVDVWSLGITCIELA  208 (308)
T ss_pred             CCCcccchHHHHHHHHHHH
Confidence            4566789999987665543

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.28  E-value=2.1e-11  Score=127.82  Aligned_cols=183  Identities=15%  Similarity=0.121  Sum_probs=110.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                  ....      .
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~~~~------~   45 (285)
T cd07861           6 EKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEE----------------------------------GVPS------T   45 (285)
T ss_pred             eEecccCceEEEEEEECCCCcEEEEEEeccccccC----------------------------------CchH------H
Confidence            5799999999999998  58999999874321110                                  0000      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhh-hh-cCCCHHHHHHHHH--HHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DE-LGVDRKRLGRYAV--ESYLEQIL  451 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l-~~-~g~d~~~ia~~li--~~~L~qi~  451 (765)
                      +.+|...+.++.     ++++ .+...+ ......++||||++| .+.+.... .. ..++...+...+.  -..+..+|
T Consensus        46 ~~~e~~~l~~l~-----h~~i~~~~~~~-~~~~~~~~v~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH  118 (285)
T cd07861          46 AIREISLLKELQ-----HPNIVCLQDVL-MQESRLYLIFEFLSM-DLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCH  118 (285)
T ss_pred             HHHHHHHHHhcC-----CCCEeeeEEEE-eeCCeEEEEEecCCC-CHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence            223444444332     2222 222222 224567999999986 55554321 11 2344444433332  23467889


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRR  530 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~  530 (765)
                      ..|++|+|++|.||+++.  ++.++|+|||++..+....+..-      .-.....+++++..... ......|++++..
T Consensus       119 ~~~i~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~  190 (285)
T cd07861         119 SRRVLHRDLKPQNLLIDN--KGVIKLADFGLARAFGIPVRVYT------HEVVTLWYRAPEVLLGSPRYSTPVDIWSIGT  190 (285)
T ss_pred             hCCeeecCCCHHHEEEcC--CCcEEECcccceeecCCCccccc------CCcccccccChHHhcCCCCcCcHHHHHHHHH
Confidence            999999999999999986  89999999999886643321100      00123445666655332 2345678888887


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       191 il~~l~  196 (285)
T cd07861         191 IFAEMA  196 (285)
T ss_pred             HHHHHH
Confidence            665554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.28  E-value=3.8e-11  Score=126.68  Aligned_cols=186  Identities=18%  Similarity=0.096  Sum_probs=113.9

Q ss_pred             ccccccceeEEEEEEe-------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      ..||.|++|+||+|..       ++..||||+.+.+....                                   .    
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~-----------------------------------~----   51 (288)
T cd05050          11 RDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASAD-----------------------------------M----   51 (288)
T ss_pred             ccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHH-----------------------------------H----
Confidence            6799999999999986       35789999874432111                                   0    


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------------
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------------  430 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------------------  430 (765)
                        +-++.+|...+.++     +++++.-..-+.......+++|||++|++|.+......                     
T Consensus        52 --~~~~~~ei~~l~~l-----~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  124 (288)
T cd05050          52 --QADFQREAALMAEF-----DHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNP  124 (288)
T ss_pred             --HHHHHHHHHHHHhc-----CCCchheEEEEEcCCCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccc
Confidence              11234444444433     12332222222233345799999999999988653211                     


Q ss_pred             cCCCHHHHHHHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHH
Q 004254          431 LGVDRKRLGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADK  508 (765)
Q Consensus       431 ~g~d~~~ia~~li--~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~  508 (765)
                      ..++...+...+.  -..+..+|..|++|+|++|.||+++.  ++.++++|||++..+....-..   . .........+
T Consensus       125 ~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~---~-~~~~~~~~~y  198 (288)
T cd05050         125 LPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLVGE--NMVVKIADFGLSRNIYSADYYK---A-SENDAIPIRW  198 (288)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHhCCeecccccHhheEecC--CCceEECccccceecccCcccc---c-cCCCccChhh
Confidence            0122222222222  22367889999999999999999986  8899999999987653321000   0 0000112346


Q ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          509 VLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       509 i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ++++....+..+...|++++...+.+++
T Consensus       199 ~aPE~~~~~~~~~~~Dv~slG~il~el~  226 (288)
T cd05050         199 MPPESIFYNRYTTESDVWAYGVVLWEIF  226 (288)
T ss_pred             cCHHHHhcCCCCchhHHHHHHHHHHHHH
Confidence            6777777666777889999887665543

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.28  E-value=4.2e-11  Score=124.64  Aligned_cols=188  Identities=15%  Similarity=0.071  Sum_probs=115.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||.|..  +|+.|+||+.+......                           +..    +.      --.
T Consensus         8 ~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~---------------------------~~~----~~------~~~   50 (265)
T cd06652           8 KLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESP---------------------------ETS----KE------VNA   50 (265)
T ss_pred             eEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCc---------------------------ccH----HH------HHH
Confidence            5799999999999998  58999999874321110                           000    00      013


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc----CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  450 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~----st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi  450 (765)
                      +.+|++.+.++.     ++++  ++.+...    ....+++|||++|++|.+..... ...+...+...+  +...+..+
T Consensus        51 ~~~E~~~l~~l~-----h~~i--~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~l~~~l~~l  122 (265)
T cd06652          51 LECEIQLLKNLL-----HERI--VQYYGCLRDPMERTLSIFMEHMPGGSIKDQLKSY-GALTENVTRKYTRQILEGVSYL  122 (265)
T ss_pred             HHHHHHHHHhcC-----CCCe--eeEEeEeccCCCceEEEEEEecCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHH
Confidence            345555555542     2222  2222211    23457999999999998864321 123333322222  23346788


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      |..|++|+|++|.||++++  ++.++|+|||+...+....... ..  .....+...+++++.......++..|++++..
T Consensus       123 H~~~i~H~dl~p~nil~~~--~~~~~l~Dfg~~~~~~~~~~~~-~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~  197 (265)
T cd06652         123 HSNMIVHRDIKGANILRDS--VGNVKLGDFGASKRLQTICLSG-TG--MKSVTGTPYWMSPEVISGEGYGRKADIWSVGC  197 (265)
T ss_pred             HhCCEecCCCCHHHEEecC--CCCEEECcCccccccccccccc-cc--cccCCCCccccChhhhcCCCCCcchhHHHHHH
Confidence            9999999999999999985  8899999999988664321000 00  00012344567777766556677789999987


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       198 il~el~  203 (265)
T cd06652         198 TVVEML  203 (265)
T ss_pred             HHHHHh
Confidence            665554

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.28  E-value=7.9e-11  Score=122.06  Aligned_cols=181  Identities=15%  Similarity=0.178  Sum_probs=114.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +++|+|++|.||+|..  +++.|++|+..+....                                           +-+
T Consensus        12 ~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~-------------------------------------------~~~   48 (275)
T cd06608          12 EVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDE-------------------------------------------EEE   48 (275)
T ss_pred             eeecCCCCeEEEEEEECCCCcEEEEEEEecCchh-------------------------------------------HHH
Confidence            6899999999999999  5889999987443210                                           112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc--------CCCeEEEEeecCCCChhhhhhhhh---cCCCHHHHHHHH--H
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY--------TTPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYA--V  443 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~--------st~~vLVMEyieG~~L~d~~~l~~---~g~d~~~ia~~l--i  443 (765)
                      +.+|...+.++.    +++  .+++++..+        ....+++|||++|++|.++.....   ..++...+...+  +
T Consensus        49 ~~~e~~~l~~~~----~h~--~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql  122 (275)
T cd06608          49 IKEEYNILRKYS----NHP--NIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRET  122 (275)
T ss_pred             HHHHHHHHHHhc----CCC--ChheEEEEEEecCCCCcceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence            334444444432    122  222222211        233689999999999988654221   233443333322  2


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-----C
Q 004254          444 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-----V  518 (765)
Q Consensus       444 ~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-----~  518 (765)
                      ...+..+|..|++|+|++|.||+++.  ++.++|+|||++..+.......      ....+...++++++....     .
T Consensus       123 ~~al~~lH~~~i~H~~l~p~ni~~~~--~~~~~l~d~~~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~  194 (275)
T cd06608         123 LRGLAYLHENKVIHRDIKGQNILLTK--NAEVKLVDFGVSAQLDSTLGRR------NTFIGTPYWMAPEVIACDEQPDAS  194 (275)
T ss_pred             HHHHHHHhcCCcccCCCCHHHEEEcc--CCeEEECCCccceecccchhhh------cCccccccccCHhHhcccccccCC
Confidence            23467889999999999999999986  7899999999988765432211      111245556777765432     2


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 004254          519 LVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       519 ~~~~~D~~~l~~~~~~~l  536 (765)
                      .....|++++...+.+++
T Consensus       195 ~~~~~Dv~slG~il~~l~  212 (275)
T cd06608         195 YDARSDVWSLGITAIELA  212 (275)
T ss_pred             ccccccHHHhHHHHHHHH
Confidence            345679999887665554

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.27  E-value=3.2e-11  Score=128.36  Aligned_cols=181  Identities=18%  Similarity=0.144  Sum_probs=115.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.+|+|++|.||+|..  +|..|++|+....-...                                    .+      .
T Consensus        25 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~------------------------------------~~------~   62 (293)
T cd06647          25 EKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPK------------------------------------KE------L   62 (293)
T ss_pred             eEecCCCCeEEEEEEEcCCCCEEEEEEeccccchH------------------------------------HH------H
Confidence            6899999999999987  68999999762110000                                    00      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|...+..+    . ++++.-..-+.......++||||++|++|.++...  ...+...+...+  +-..+..+|..|
T Consensus        63 ~~~e~~~l~~l----~-hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~l~~~~~~~i~~~l~~al~~LH~~g  135 (293)
T cd06647          63 IINEILVMREN----K-HPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE--TCMDEGQIAAVCRECLQALEFLHSNQ  135 (293)
T ss_pred             HHHHHHHHhhc----C-CCCeeehhheeeeCCcEEEEEecCCCCcHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            22333322222    2 23322222122234567999999999999886532  223333333322  223467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|++|.||+++.  ++.++++|||++..+.+.....      ....+...++.+++...+..++..|++++...+.+
T Consensus       136 i~H~dL~p~Nili~~--~~~~kL~dfg~~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~  207 (293)
T cd06647         136 VIHRDIKSDNILLGM--DGSVKLTDFGFCAQITPEQSKR------STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIE  207 (293)
T ss_pred             EeeccCCHHHEEEcC--CCCEEEccCcceeccccccccc------ccccCChhhcCchhhccCCCCchhhHHHHHHHHHH
Confidence            999999999999986  7899999999988766543211      01123455667777766667778899998876655


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       208 ll  209 (293)
T cd06647         208 MV  209 (293)
T ss_pred             HH
Confidence            54

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.27  E-value=1.3e-11  Score=129.51  Aligned_cols=183  Identities=16%  Similarity=0.145  Sum_probs=109.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||+|+.+......                                  +...      +
T Consensus         6 ~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~----------------------------------~~~~------~   45 (284)
T cd07839           6 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDE----------------------------------GVPS------S   45 (284)
T ss_pred             EEecccCCeEEEEEEECCCCcEEEEEEeecccccc----------------------------------cCcc------c
Confidence            5799999999999999  69999999874321110                                  0000      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      +.+|...+.++.     ++++ .+...+ ......+++|||++| ++.+.........+...+...+.  -..+..+|..
T Consensus        46 ~~~ei~~l~~l~-----h~~i~~~~~~~-~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~  118 (284)
T cd07839          46 ALREICLLKELK-----HKNIVRLYDVL-HSDKKLTLVFEYCDQ-DLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSH  118 (284)
T ss_pred             hhHHHHHHHhcC-----CCCeeeHHHHh-ccCCceEEEEecCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            222333333321     1211 111111 224567999999987 45554322222344444433332  2347788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~~~  532 (765)
                      |++|+|+||+||+++.  ++.++|+|||++..+....+..      .....+..+++++....+ ..++..|++++.-.+
T Consensus       119 ~i~H~dl~~~nil~~~--~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il  190 (284)
T cd07839         119 NVLHRDLKPQNLLINK--NGELKLADFGLARAFGIPVRCY------SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIF  190 (284)
T ss_pred             CEecCCCCHHHEEEcC--CCcEEECccchhhccCCCCCCc------CCCccccCCcChHHHhCCcccCcHHHHHHHHHHH
Confidence            9999999999999986  7899999999988664332110      001123445667765432 346677999988766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       191 ~~l~  194 (284)
T cd07839         191 AELA  194 (284)
T ss_pred             HHHH
Confidence            6554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.27  E-value=5e-11  Score=122.20  Aligned_cols=181  Identities=18%  Similarity=0.172  Sum_probs=113.7

Q ss_pred             ccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          301 IAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       301 IgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      ||.|++|+||++..  +|+.|++|+.+.+....-                                       .....+.
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~---------------------------------------~~~~~~~   41 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKR---------------------------------------KEVEHTL   41 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcch---------------------------------------HHHHHHH
Confidence            68999999999999  489999998754321110                                       0011222


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      .|...+..+.     +++  ++.++.  +.....+++|||++|.+|.+..... ..++...+...+  +-..+..+|..|
T Consensus        42 ~e~~~l~~l~-----h~~--i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~lh~~~  113 (250)
T cd05123          42 TERNILSRIN-----HPF--IVKLHYAFQTEEKLYLVLEYAPGGELFSHLSKE-GRFSEERARFYAAEIVLALEYLHSLG  113 (250)
T ss_pred             HHHHHHHHcC-----CCc--HHHHHHHeecCCeeEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            3333333222     121  222222  2234569999999999998765322 134444443332  333467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|++|.||+++.  ++.++++|||++.........      .....+...++.++...-...++..|.+++...+.+
T Consensus       114 ~~H~~l~p~ni~~~~--~~~~~l~d~~~~~~~~~~~~~------~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~  185 (250)
T cd05123         114 IIYRDLKPENILLDA--DGHIKLTDFGLAKELSSEGSR------TNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYE  185 (250)
T ss_pred             ceecCCCcceEEEcC--CCcEEEeecCcceecccCCCc------ccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHH
Confidence            999999999999986  789999999999876543210      011224455666776655556677899988766655


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       186 l~  187 (250)
T cd05123         186 ML  187 (250)
T ss_pred             HH
Confidence            44

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.27  E-value=3.5e-11  Score=124.39  Aligned_cols=188  Identities=20%  Similarity=0.177  Sum_probs=116.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++||+|++|.||+|..  +|+.|+||+.+.....                                  .+..+      .
T Consensus         6 ~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~----------------------------------~~~~~------~   45 (264)
T cd06626           6 NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDND----------------------------------PKTIK------E   45 (264)
T ss_pred             eEeecCCCcEEEEEEECCCCcEEEEEEEECcccc----------------------------------hHHHH------H
Confidence            6899999999999998  6899999987543221                                  00111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +..|...+.++.     ++++.-...+.......++||||++|++|.++..... ..+...+...+  +-..+..+|..|
T Consensus        46 ~~~e~~~~~~l~-----~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~~i~~~l~~lh~~~  119 (264)
T cd06626          46 IADEMKVLELLK-----HPNLVKYYGVEVHREKVYIFMEYCSGGTLEELLEHGR-ILDEHVIRVYTLQLLEGLAYLHSHG  119 (264)
T ss_pred             HHHHHHHHHhCC-----CCChhheeeeEecCCEEEEEEecCCCCcHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHHCC
Confidence            223333333332     1222111112223456799999999999998754321 12333322222  223367789999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC---CCCCCCHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV---LVPTGDTTAVRRT  531 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~---~~~~~D~~~l~~~  531 (765)
                      ++|+|++|+||++++  ++.++|+|||.+..+....... ...+. ...+...++.++....+.   .....|++++...
T Consensus       120 i~H~dl~~~nil~~~--~~~~kl~d~g~~~~~~~~~~~~-~~~~~-~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~i  195 (264)
T cd06626         120 IVHRDIKPANIFLDH--NGVIKLGDFGCAVKLKNNTTTM-GEEVQ-SLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCV  195 (264)
T ss_pred             cccCCCCHHHEEECC--CCCEEEcccccccccCCCCCcc-ccccc-CCcCCcCccChhhccCCCCCCCCcccchHHHHHH
Confidence            999999999999986  8899999999998876543211 00000 123445566777766544   5667899998876


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       196 l~~l~  200 (264)
T cd06626         196 VLEMA  200 (264)
T ss_pred             HHHHH
Confidence            65554

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.27  E-value=1.7e-11  Score=148.00  Aligned_cols=186  Identities=15%  Similarity=0.141  Sum_probs=132.8

Q ss_pred             ccccccceeEEEEEEe---CCe----EEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL---KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l---~G~----~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||.|.||.||+|+.   +|.    .||||..++...                                         .
T Consensus       698 ~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~-----------------------------------------~  736 (1025)
T KOG1095|consen  698 RVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSS-----------------------------------------E  736 (1025)
T ss_pred             eeeccccccceEEEEEecCCCCccceEEEEEeccccCC-----------------------------------------H
Confidence            5899999999999999   354    388887644322                                         2


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh------hcCCCHHHHHHHHHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD------ELGVDRKRLGRYAVES  445 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~------~~g~d~~~ia~~li~~  445 (765)
                      .++.||.+||.+|..|.+     ++|.----+.-.....++++|||+|+.|-.+.+..      ...+...++....++.
T Consensus       737 ~~~~~Fl~Ea~~m~~f~H-----pNiv~liGv~l~~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dv  811 (1025)
T KOG1095|consen  737 QEVSDFLKEALLMSKFDH-----PNIVSLIGVCLDSGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDV  811 (1025)
T ss_pred             HHHHHHHHHHHHHhcCCC-----cceeeEEEeecCCCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHH
Confidence            356799999999988743     33322211222267789999999999998876544      4456667777766655


Q ss_pred             H--HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCC
Q 004254          446 Y--LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTG  523 (765)
Q Consensus       446 ~--L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~  523 (765)
                      .  ++++.+.+|||||+-.-|.|++.  ...+++.||||++.+...+.  |..--.  ...-..+|.++...-|+.+...
T Consensus       812 A~G~~YLe~~~fvHRDLAaRNCLL~~--~r~VKIaDFGlArDiy~~~y--yr~~~~--a~lPvkWm~PEsl~d~iFtskS  885 (1025)
T KOG1095|consen  812 AKGMNYLESKHFVHRDLAARNCLLDE--RRVVKIADFGLARDIYDKDY--YRKHGE--AMLPVKWMPPESLKDGIFTSKS  885 (1025)
T ss_pred             hhhhHHHHhCCCcCcchhhhheeecc--cCcEEEcccchhHhhhhchh--eeccCc--cccceecCCHHHHhhccccccc
Confidence            4  78899999999999999999986  68899999999995543321  110000  1112456777777778889999


Q ss_pred             CHHHHHHHHHHHH
Q 004254          524 DTTAVRRTAQFFL  536 (765)
Q Consensus       524 D~~~l~~~~~~~l  536 (765)
                      |+++|...+-+++
T Consensus       886 DvWsFGVllWEif  898 (1025)
T KOG1095|consen  886 DVWSFGVLLWEIF  898 (1025)
T ss_pred             chhhhHHHHHHHH
Confidence            9999997765554

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.27  E-value=2.5e-11  Score=128.49  Aligned_cols=187  Identities=16%  Similarity=0.137  Sum_probs=114.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|..  +|+.|+||..+......-                               .++..      -.
T Consensus         6 ~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~-------------------------------~~~~~------~~   48 (298)
T cd07841           6 KKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEA-------------------------------KDGIN------FT   48 (298)
T ss_pred             eeeeeccccEEEEEEECCCCcEEEEEEEeccccccc-------------------------------cchhh------HH
Confidence            4699999999999998  589999998855332110                               00011      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +..|...+.++.    +..-+.+...+. .....++||||+ +++|.++.......++...+...+.  -..+..+|..|
T Consensus        49 ~~~e~~~l~~~~----h~~i~~~~~~~~-~~~~~~lv~e~~-~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~~  122 (298)
T cd07841          49 ALREIKLLQELK----HPNIIGLLDVFG-HKSNINLVFEFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNW  122 (298)
T ss_pred             HHHHHHHHhhcC----CCCChhhhheee-cCCEEEEEEccc-CCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            233444444332    212222333332 245679999999 7788876533221344444433322  23467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|++|+||+++.  ++.++|+|||++..+.......-      ....+..+++++.... .......|++++.-.+.
T Consensus       123 i~H~dl~p~nill~~--~~~~~l~dfg~~~~~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~  194 (298)
T cd07841         123 ILHRDLKPNNLLIAS--DGVLKLADFGLARSFGSPNRKMT------HQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFA  194 (298)
T ss_pred             eeecCCChhhEEEcC--CCCEEEccceeeeeccCCCcccc------ccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHH
Confidence            999999999999986  88999999999987754321100      0012334555665532 34456679998887665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       195 e~~  197 (298)
T cd07841         195 ELL  197 (298)
T ss_pred             HHH
Confidence            554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.27  E-value=2.4e-11  Score=128.73  Aligned_cols=185  Identities=15%  Similarity=0.084  Sum_probs=116.6

Q ss_pred             ccccccceeEEEEEEe-------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      ..||.|++|.||+|..       ++..|++|.......                                          
T Consensus        11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~------------------------------------------   48 (291)
T cd05094          11 RELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTL------------------------------------------   48 (291)
T ss_pred             eeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccH------------------------------------------
Confidence            5799999999999985       245688887632111                                          


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc---------------CCCHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL---------------GVDRK  436 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~---------------g~d~~  436 (765)
                      ..+-+|.+|+..+.++.     ++++.-..-+.......++||||++|++|.++......               ..+..
T Consensus        49 ~~~~~~~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  123 (291)
T cd05094          49 AARKDFQREAELLTNLQ-----HEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLS  123 (291)
T ss_pred             HHHHHHHHHHHHHhcCC-----CCCcceEEEEEccCCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHH
Confidence            11123445555555442     23333222233445667999999999999987542211               12223


Q ss_pred             HHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004254          437 RLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV  514 (765)
Q Consensus       437 ~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~  514 (765)
                      .+...+  +-..+..+|..|++|+|++|.||++++  ++.++++|||++..+.........    ....+...+++++..
T Consensus       124 ~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~--~~~~~l~dfg~a~~~~~~~~~~~~----~~~~~~~~y~aPE~~  197 (291)
T cd05094         124 QMLHIASQIASGMVYLASQHFVHRDLATRNCLVGA--NLLVKIGDFGMSRDVYSTDYYRVG----GHTMLPIRWMPPESI  197 (291)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeecccCcceEEEcc--CCcEEECCCCcccccCCCceeecC----CCCCcceeecChHHh
Confidence            332222  223367889999999999999999986  889999999998765432211100    111123456777777


Q ss_pred             HcCCCCCCCCHHHHHHHHHHHH
Q 004254          515 QMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       515 ~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      .....++..|++++...+.+++
T Consensus       198 ~~~~~~~~~Di~slG~il~el~  219 (291)
T cd05094         198 MYRKFTTESDVWSFGVILWEIF  219 (291)
T ss_pred             ccCCCCchhhHHHHHHHHHHHH
Confidence            6666777889999987665544

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.27  E-value=1.6e-11  Score=126.21  Aligned_cols=183  Identities=15%  Similarity=0.131  Sum_probs=115.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.+|+|++|.||+|..  +|+.||+|+........                                  +-.+      .
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~----------------------------------~~~~------~   45 (265)
T cd08217           6 ETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTE----------------------------------KEKQ------Q   45 (265)
T ss_pred             eeeccCCCeEEEEeeecCCCCEEEEEEEecccCCH----------------------------------HHHH------H
Confidence            5799999999999998  68999999874321100                                  0011      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee----ccCCCeEEEEeecCCCChhhhhhhh---hcCCCHHHHHHHH--HHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW----EYTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYA--VESYL  447 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~----e~st~~vLVMEyieG~~L~d~~~l~---~~g~d~~~ia~~l--i~~~L  447 (765)
                      +..|...+..+.    + ++  +++.+.    ......+++|||++|++|.++....   ...++...+....  +...+
T Consensus        46 ~~~e~~~l~~l~----~-~~--i~~~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l  118 (265)
T cd08217          46 LVSEVNILRELK----H-PN--IVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLAL  118 (265)
T ss_pred             HHHHHHHHHhcC----C-Cc--cceeeeeeecCCCCEEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHH
Confidence            223333333332    1 22  222221    1123458999999999998865322   1223433333332  22336


Q ss_pred             HHHH-----hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004254          448 EQIL-----SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (765)
Q Consensus       448 ~qi~-----~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~  522 (765)
                      ..+|     ..|++|+|+||+||+++.  ++.++++|||++..+......  ..    -..+...++.++....+..+..
T Consensus       119 ~~lH~~~~~~~~i~h~dl~p~nili~~--~~~~kl~d~g~~~~~~~~~~~--~~----~~~~~~~~~~pE~~~~~~~~~~  190 (265)
T cd08217         119 YECHNRSDPGNTVLHRDLKPANIFLDA--NNNVKLGDFGLAKILGHDSSF--AK----TYVGTPYYMSPEQLNHMSYDEK  190 (265)
T ss_pred             HHHhcCccccCcceecCCCHHHEEEec--CCCEEEecccccccccCCccc--cc----ccccCCCccChhhhcCCCCCch
Confidence            7788     889999999999999986  899999999999987654310  00    0124555677777766666777


Q ss_pred             CCHHHHHHHHHHHH
Q 004254          523 GDTTAVRRTAQFFL  536 (765)
Q Consensus       523 ~D~~~l~~~~~~~l  536 (765)
                      .|++++...+.+++
T Consensus       191 ~Dv~slG~il~~l~  204 (265)
T cd08217         191 SDIWSLGCLIYELC  204 (265)
T ss_pred             hHHHHHHHHHHHHH
Confidence            89999887665554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.27  E-value=3.6e-11  Score=126.02  Aligned_cols=183  Identities=13%  Similarity=0.099  Sum_probs=110.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|+.  +|+.||||+.+......                           .              .-.
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~---------------------------~--------------~~~   44 (284)
T cd07836           6 EKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEG---------------------------T--------------PST   44 (284)
T ss_pred             eeeccCCceEEEEEEECCCCeEEEEEEeccccccc---------------------------c--------------hHH
Confidence            6799999999999999  59999999885432110                           0              001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh--cCCCHHHHHHHHH--HHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE--LGVDRKRLGRYAV--ESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~--~g~d~~~ia~~li--~~~L~qi~~  452 (765)
                      +.+|+..+..+.     ++++.-..-+.......+|||||++| .+.+......  ..++...+...+.  -..+..+|.
T Consensus        45 ~~~E~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~  118 (284)
T cd07836          45 AIREISLMKELK-----HENIVRLHDVIHTENKLMLVFEYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHE  118 (284)
T ss_pred             HHHHHHHHHhhc-----CCCEeeeeeeEeeCCcEEEEEecCCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence            233444444442     23332222222334567999999997 5655432211  2234444333322  234678899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRT  531 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~  531 (765)
                      .|++|+|++|.||++++  ++.++++|||++..+....+....      ...+..++.++.... .......|++++...
T Consensus       119 ~~i~h~dl~p~ni~~~~--~~~~~l~d~g~~~~~~~~~~~~~~------~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~  190 (284)
T cd07836         119 NRVLHRDLKPQNLLINK--RGELKLADFGLARAFGIPVNTFSN------EVVTLWYRAPDVLLGSRTYSTSIDIWSVGCI  190 (284)
T ss_pred             CCeeeCCCCHHHEEECC--CCcEEEeecchhhhhcCCcccccc------ccccccccChHHhcCCCCCCcHHHHHHHHHH
Confidence            99999999999999985  889999999998765432211000      012334555665433 233456788888766


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       191 l~~l~  195 (284)
T cd07836         191 MAEMI  195 (284)
T ss_pred             HHHHH
Confidence            55544

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.27  E-value=5.7e-11  Score=123.99  Aligned_cols=183  Identities=16%  Similarity=0.152  Sum_probs=115.1

Q ss_pred             ccccccceeEEEEEEe-C--C--eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-K--G--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~--G--~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||.|++|.||+|+. +  +  ..|+||..+......                                   .      
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~-----------------------------------~------   50 (270)
T cd05056          12 RCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPS-----------------------------------V------   50 (270)
T ss_pred             eeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHH-----------------------------------H------
Confidence            6899999999999997 2  2  468899764332110                                   0      


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  451 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~  451 (765)
                      .-.|.+|+..+.++.    +..-+.+..++  .....+++|||++|++|.++........+...+...+  +-..+..+|
T Consensus        51 ~~~~~~e~~~l~~~~----h~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH  124 (270)
T cd05056          51 REKFLQEAYIMRQFD----HPHIVKLIGVI--TENPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLE  124 (270)
T ss_pred             HHHHHHHHHHHHhCC----CCchhceeEEE--cCCCcEEEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            013344555444442    21222222222  1345689999999999988754333234444333322  233467889


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..|++|+|++|.||+++.  ++.++++|||++..+.....  +..   ........+++++.......+...|++++...
T Consensus       125 ~~~~~H~dl~p~nili~~--~~~~~l~d~g~~~~~~~~~~--~~~---~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  197 (270)
T cd05056         125 SKRFVHRDIAARNVLVSS--PDCVKLGDFGLSRYLEDESY--YKA---SKGKLPIKWMAPESINFRRFTSASDVWMFGVC  197 (270)
T ss_pred             hCCeeccccChheEEEec--CCCeEEccCceeeecccccc--eec---CCCCccccccChhhhccCCCCchhhhHHHHHH
Confidence            999999999999999986  78999999999887754321  000   01112345667777766666777899998766


Q ss_pred             HHHH
Q 004254          532 AQFF  535 (765)
Q Consensus       532 ~~~~  535 (765)
                      +.++
T Consensus       198 l~el  201 (270)
T cd05056         198 MWEI  201 (270)
T ss_pred             HHHH
Confidence            5543

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.27  E-value=4.1e-11  Score=126.74  Aligned_cols=185  Identities=14%  Similarity=0.110  Sum_probs=112.2

Q ss_pred             ccccccceeEEEEEEeC-------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||.|++|.||+|+..       +..|++|+.+.+....                                        
T Consensus         6 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~----------------------------------------   45 (290)
T cd05045           6 KTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSS----------------------------------------   45 (290)
T ss_pred             ccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHH----------------------------------------
Confidence            57899999999999872       2578999774432111                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhh--------------------
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE--------------------  430 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~--------------------  430 (765)
                       ..-++.+|..-+..+    . ++++ .+...+ ......+++|||++|++|.++.....                    
T Consensus        46 -~~~~~~~E~~~l~~l----~-h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~  118 (290)
T cd05045          46 -ELRDLLSEFNLLKQV----N-HPHVIKLYGAC-SQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDN  118 (290)
T ss_pred             -HHHHHHHHHHHHhhC----C-CCCEeeEEEEE-ecCCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccC
Confidence             011344444434333    2 2322 222222 33466799999999999988643210                    


Q ss_pred             ---cCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcC
Q 004254          431 ---LGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKD  505 (765)
Q Consensus       431 ---~g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D  505 (765)
                         ..++...+...+  +-..+..+|..|++|+|++|.||++++  ++.++|+|||++..+......  ...  ......
T Consensus       119 ~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~nill~~--~~~~kl~dfg~~~~~~~~~~~--~~~--~~~~~~  192 (290)
T cd05045         119 PDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAE--GRKMKISDFGLSRDVYEEDSY--VKR--SKGRIP  192 (290)
T ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhheEEEcC--CCcEEeccccccccccCccch--hcc--cCCCCC
Confidence               012222222222  223468889999999999999999986  789999999998866433211  000  001122


Q ss_pred             HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          506 ADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       506 ~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ..+++++...-...+...|++++...+.+++
T Consensus       193 ~~y~apE~~~~~~~~~~~Di~slG~~l~el~  223 (290)
T cd05045         193 VKWMAIESLFDHIYTTQSDVWSFGVLLWEIV  223 (290)
T ss_pred             ccccCHHHHccCCcchHhHHHHHHHHHHHHH
Confidence            3456666655555667789998887665544

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.27  E-value=2.5e-11  Score=132.59  Aligned_cols=194  Identities=19%  Similarity=0.205  Sum_probs=115.5

Q ss_pred             hCCChhhhhcccC-cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchH
Q 004254          285 LGAPLDDVFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWV  361 (765)
Q Consensus       285 lG~~~eeiF~~fd-~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~  361 (765)
                      ++..+.++-+.|. .++||+|++|.||+|..  +|+.||||+........                              
T Consensus         8 ~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~------------------------------   57 (345)
T cd07877           8 LNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSI------------------------------   57 (345)
T ss_pred             HHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhh------------------------------
Confidence            3333333334443 37899999999999997  69999999874432110                              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee-----ccCCCeEEEEeecCCCChhhhhhhhhcCCCHH
Q 004254          362 AIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINRIQSLDELGVDRK  436 (765)
Q Consensus       362 ~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~-----e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~  436 (765)
                                ..+-.+.+|...+.++++    ..-+.+..++.     +.....+++|+++ |..|.++....  .++..
T Consensus        58 ----------~~~~~~~~Ei~~l~~l~h----~~iv~~~~~~~~~~~~~~~~~~~lv~~~~-~~~L~~~~~~~--~l~~~  120 (345)
T cd07877          58 ----------IHAKRTYRELRLLKHMKH----ENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKCQ--KLTDD  120 (345)
T ss_pred             ----------HHHHHHHHHHHHHHHcCC----CcccceeeeeeecccccccccEEEEehhc-ccCHHHHHhcC--CCCHH
Confidence                      001123345554554421    11122222221     1123467888887 66777654322  23333


Q ss_pred             HHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004254          437 RLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV  514 (765)
Q Consensus       437 ~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~  514 (765)
                      .+...+  +-..+..+|..|++|+|+||+||++++  ++.++++|||++.........         ..+...+++++..
T Consensus       121 ~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~--~~~~kl~dfg~~~~~~~~~~~---------~~~~~~y~aPE~~  189 (345)
T cd07877         121 HVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNE--DCELKILDFGLARHTDDEMTG---------YVATRWYRAPEIM  189 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcC--CCCEEEecccccccccccccc---------cccCCCccCHHHH
Confidence            332222  223468889999999999999999986  889999999998876443210         1123335556654


Q ss_pred             Hc-CCCCCCCCHHHHHHHHHHHH
Q 004254          515 QM-GVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       515 ~l-G~~~~~~D~~~l~~~~~~~l  536 (765)
                      .. ...++..|++++...+.+++
T Consensus       190 ~~~~~~~~~~DvwslG~il~el~  212 (345)
T cd07877         190 LNWMHYNQTVDIWSVGCIMAELL  212 (345)
T ss_pred             hCccCCCchhhHHHHHHHHHHHH
Confidence            33 33456789999887665554

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.27  E-value=6.2e-12  Score=135.54  Aligned_cols=181  Identities=22%  Similarity=0.268  Sum_probs=103.3

Q ss_pred             CcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          297 DVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       297 d~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      +.+-+|+||||.||+|.+  ++++||||-.-|+-+-. .                                       +|
T Consensus        28 ~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~k-n---------------------------------------rE   67 (364)
T KOG0658|consen   28 AVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYK-N---------------------------------------RE   67 (364)
T ss_pred             eeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcC-c---------------------------------------HH
Confidence            347899999999999999  58999999764443211 1                                       12


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccc-cceeeeccCCC----eEEEEeecCCCChhhhhhh-h--hcCCCH--HHHHHHHHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYVK-VPTIFWEYTTP----QILTMEYVPGIKINRIQSL-D--ELGVDR--KRLGRYAVE  444 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~-vP~vy~e~st~----~vLVMEyieG~~L~d~~~l-~--~~g~d~--~~ia~~li~  444 (765)
                      +.++++          . ++++|. .-.-|...++.    .-||||||+- +|.+.... .  ....+.  -++....+-
T Consensus        68 l~im~~----------l-~HpNIV~L~~~f~~~~~~d~~~lnlVleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlf  135 (364)
T KOG0658|consen   68 LQIMRK----------L-DHPNIVRLLYFFSSSTESDEVYLNLVLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLF  135 (364)
T ss_pred             HHHHHh----------c-CCcCeeeEEEEEEecCCCchhHHHHHHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHH
Confidence            222221          1 223322 22222211222    2689999974 45444321 0  111221  122222333


Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004254          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (765)
Q Consensus       445 ~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D  524 (765)
                      ..+..+|.+|+.|||+||.|+||++ ..|.++|+|||.++.+.+.....  ..+..-.-+-++    .+...--.+...|
T Consensus       136 rgl~yLh~~~IcHRDIKPqNlLvD~-~tg~LKicDFGSAK~L~~~epni--SYicSRyYRaPE----Lifga~~Yt~~ID  208 (364)
T KOG0658|consen  136 RGLAYLHSHGICHRDIKPQNLLVDP-DTGVLKICDFGSAKVLVKGEPNI--SYICSRYYRAPE----LIFGATEYTTSID  208 (364)
T ss_pred             HHHHHHHhcCcccCCCChheEEEcC-CCCeEEeccCCcceeeccCCCce--eEEEeccccCHH----HHcCccccCceeE
Confidence            3467788999999999999999996 57999999999999998765431  111111112222    2222233445567


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      +++..-.+.+++
T Consensus       209 iWSaGCV~aELl  220 (364)
T KOG0658|consen  209 IWSAGCVMAELL  220 (364)
T ss_pred             EhhhhHHHHHHh
Confidence            777666555544

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.27  E-value=2.1e-11  Score=129.97  Aligned_cols=138  Identities=16%  Similarity=0.138  Sum_probs=83.1

Q ss_pred             CccccceeeeccCC------CeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEE
Q 004254          395 DYVKVPTIFWEYTT------PQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIA  466 (765)
Q Consensus       395 ~~V~vP~vy~e~st------~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNIL  466 (765)
                      .+..+|..+.....      ..+++||++.+ .+.+..... .......+...+  +...+..+|..|++|||+||.||+
T Consensus        81 ~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nil  158 (294)
T PHA02882         81 DHLGIPKYYGCGSFKRCRMYYRFILLEKLVE-NTKEIFKRI-KCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIM  158 (294)
T ss_pred             CCCCCCcEEEeeeEecCCceEEEEEEehhcc-CHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE
Confidence            34556666642211      23678887654 333332111 112223222222  223467889999999999999999


Q ss_pred             EeecCCCcEEEEeecceeccChhhHH-HHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          467 VDDVNGGRLIFYDFGMMGSISPNIRE-GLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       467 V~~~~~g~l~LiDFGlv~~L~~~~r~-~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +++  ++.++|+|||++..+...... .+..-......+.+.+++++.......++..|++++.-.+.+++
T Consensus       159 l~~--~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~  227 (294)
T PHA02882        159 VDG--NNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWA  227 (294)
T ss_pred             EcC--CCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence            985  789999999999876432211 00000111224567778888777666778889999887665544

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.27  E-value=1.9e-11  Score=129.12  Aligned_cols=184  Identities=14%  Similarity=0.046  Sum_probs=107.6

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||+|++|.||+|..  +|+.||||+.+....+..                                         +.
T Consensus        10 ~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~-----------------------------------------~~   48 (291)
T cd07870          10 LEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGV-----------------------------------------PF   48 (291)
T ss_pred             EEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCC-----------------------------------------cH
Confidence            36799999999999998  689999998743221110                                         01


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      .+.+|+..+..+.     ++++.-..-+.......+++|||++|..+..+. ..........+...+  +-..+..+|..
T Consensus        49 ~~~~e~~~l~~l~-----h~ni~~~~~~~~~~~~~~lv~e~~~~~l~~~~~-~~~~~~~~~~~~~~~~qi~~~L~~lH~~  122 (291)
T cd07870          49 TAIREASLLKGLK-----HANIVLLHDIIHTKETLTFVFEYMHTDLAQYMI-QHPGGLHPYNVRLFMFQLLRGLAYIHGQ  122 (291)
T ss_pred             HHHHHHHHHHhcC-----CCCEeEEEEEEecCCeEEEEEecccCCHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            2234444444332     233322222223345679999999764433322 112223333322222  22346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~  532 (765)
                      |++|+|+||.||+++.  ++.++|+|||++...........      ....+..++.++.... ...+...|++++...+
T Consensus       123 ~i~H~dlkp~Nil~~~--~~~~~l~Dfg~~~~~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l  194 (291)
T cd07870         123 HILHRDLKPQNLLISY--LGELKLADFGLARAKSIPSQTYS------SEVVTLWYRPPDVLLGATDYSSALDIWGAGCIF  194 (291)
T ss_pred             CcccCCCChHHEEEcC--CCcEEEeccccccccCCCCCCCC------CccccccccCCceeecCCCCCcHHHHHHHHHHH
Confidence            9999999999999985  88999999998875433211100      0012334455555432 2234567888887766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       195 ~~l~  198 (291)
T cd07870         195 IEML  198 (291)
T ss_pred             HHHH
Confidence            5554

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.27  E-value=3.3e-11  Score=128.72  Aligned_cols=188  Identities=14%  Similarity=0.113  Sum_probs=110.2

Q ss_pred             CcccccccceeEEEEEEe----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          297 DVEPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       297 d~~PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +...||.|++|.||+|+.    ++..||+|..++.-.                                           
T Consensus         5 ~g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~-------------------------------------------   41 (317)
T cd07867           5 EGCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGI-------------------------------------------   41 (317)
T ss_pred             eceEeccCCCeeEEEEEecCCCccceEEEEEecCCCC-------------------------------------------
Confidence            446799999999999997    257899997643110                                           


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhhh--------cCCCHHHHHHHH-
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDE--------LGVDRKRLGRYA-  442 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~~--------~g~d~~~ia~~l-  442 (765)
                       ...+.+|++.+.++    .+..-+.+..++... ....+++|||++|. +.++.....        ..+....+...+ 
T Consensus        42 -~~~~~~E~~~l~~l----~h~niv~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~  115 (317)
T cd07867          42 -SMSACREIALLREL----KHPNVIALQKVFLSHSDRKVWLLFDYAEHD-LWHIIKFHRASKANKKPMQLPRSMVKSLLY  115 (317)
T ss_pred             -cHHHHHHHHHHHhC----CCCCeeeEEEEEeccCCCeEEEEEeeeCCc-HHHHHHhhhccccCCCCccCCHHHHHHHHH
Confidence             00122344333333    222223333333222 23458999999874 444322110        112222222222 


Q ss_pred             -HHHHHHHHHhCCccccCCCCCcEEEeec--CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CC
Q 004254          443 -VESYLEQILSHGFFHADPHPGNIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GV  518 (765)
Q Consensus       443 -i~~~L~qi~~~GffHaDpHPGNILV~~~--~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~  518 (765)
                       +-..+..+|..|++|+|+||.||++...  .++.++|+|||++..+....... ..  .....++..+++++...- ..
T Consensus       116 qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~-~~--~~~~~~t~~y~aPE~~~~~~~  192 (317)
T cd07867         116 QILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPL-AD--LDPVVVTFWYRAPELLLGARH  192 (317)
T ss_pred             HHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccc-cc--cCcceecccccCcHHhcCCCc
Confidence             2234778899999999999999999521  25789999999998765432110 00  001123455677776643 34


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 004254          519 LVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       519 ~~~~~D~~~l~~~~~~~l  536 (765)
                      .+...|++++...+.+++
T Consensus       193 ~~~~~DiwSlG~il~el~  210 (317)
T cd07867         193 YTKAIDIWAIGCIFAELL  210 (317)
T ss_pred             cCcHHHHHhHHHHHHHHH
Confidence            566789999987766654

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.27  E-value=2.4e-11  Score=142.66  Aligned_cols=195  Identities=14%  Similarity=0.113  Sum_probs=116.8

Q ss_pred             ccccccceeEEEEEEe-C-CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-K-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~-G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +-||.|+||+||.|.+ . |.++|+|.+.-.-+                                    +--+.+.+|++
T Consensus        43 ~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de------------------------------------~~L~~v~~EI~   86 (738)
T KOG1989|consen   43 KVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDE------------------------------------EALNAVKREID   86 (738)
T ss_pred             EEEccCCcEEEEEEEecCCCceeeeeeeecCCH------------------------------------HHHHHHHHHHH
Confidence            6799999999999999 4 49999997733211                                    11123456666


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhh-hhhcCCCHHHHHHHHHHHH--HHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQS-LDELGVDRKRLGRYAVESY--LEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~-l~~~g~d~~~ia~~li~~~--L~qi~~~  453 (765)
                      ++...++.+.+-..+.....-..-..   -.-+..|-||||.|+.|-|+.. ..+.++...++...+.+.+  +..||..
T Consensus        87 ~MK~L~gh~nIV~yidss~~~~~~~~---~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~  163 (738)
T KOG1989|consen   87 IMKLLSGHKNIVSYIDSSAINRSSNN---GVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYL  163 (738)
T ss_pred             HHHHhcCCCceeeEeccccccccCCC---ceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcC
Confidence            65554422221111110000000000   0013478999999999988764 2234577777777765554  5667766


Q ss_pred             C--ccccCCCCCcEEEeecCCCcEEEEeecceeccC--hhhHHHHHHHHHHHhh-cCH----HHHHHHHHHcCCCCCCCC
Q 004254          454 G--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS--PNIREGLLEAFYGIYE-KDA----DKVLQAMVQMGVLVPTGD  524 (765)
Q Consensus       454 G--ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~--~~~r~~l~~l~~ai~~-~D~----~~i~~~l~~lG~~~~~~D  524 (765)
                      .  ++|||||-+|||+..  +|..+|||||.+....  ++......-+=.-|.. -++    ..|++.+-.++ +.++.|
T Consensus       164 ~pPiIHRDLKiENvLls~--~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~p-I~eKsD  240 (738)
T KOG1989|consen  164 KPPIIHRDLKIENVLLSA--DGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLP-IGEKSD  240 (738)
T ss_pred             CCccchhhhhhhheEEcC--CCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCC-CcchhH
Confidence            6  999999999999986  8899999999987533  2222221111111111 122    33444444444 467889


Q ss_pred             HHHHHHHHHHH
Q 004254          525 TTAVRRTAQFF  535 (765)
Q Consensus       525 ~~~l~~~~~~~  535 (765)
                      +++|.-.++.+
T Consensus       241 IWALGclLYkL  251 (738)
T KOG1989|consen  241 IWALGCLLYKL  251 (738)
T ss_pred             HHHHHHHHHHH
Confidence            99999876654

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.26  E-value=3e-11  Score=131.65  Aligned_cols=194  Identities=19%  Similarity=0.217  Sum_probs=115.9

Q ss_pred             HhCCChhhhhcccC-cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccch
Q 004254          284 ELGAPLDDVFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDW  360 (765)
Q Consensus       284 elG~~~eeiF~~fd-~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~  360 (765)
                      +.++...++...|. .++||+|++|.||+|+.  +|+.||||+.+......                             
T Consensus         5 ~~~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------   55 (342)
T cd07879           5 EVNKTVWELPERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSE-----------------------------   55 (342)
T ss_pred             hhhhhhhccccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccc-----------------------------
Confidence            45555555556664 48999999999999997  69999999874321100                             


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeec-----cCCCeEEEEeecCCCChhhhhhhhhcCCCH
Q 004254          361 VAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDELGVDR  435 (765)
Q Consensus       361 ~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e-----~st~~vLVMEyieG~~L~d~~~l~~~g~d~  435 (765)
                           .+..      ++..|...+..+.    +..-+.+..++..     .....++||||+.+ .+.+..   ...+..
T Consensus        56 -----~~~~------~~~~e~~~l~~l~----h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~---~~~~~~  116 (342)
T cd07879          56 -----IFAK------RAYRELTLLKHMQ----HENVIGLLDVFTSAVSGDEFQDFYLVMPYMQT-DLQKIM---GHPLSE  116 (342)
T ss_pred             -----cchh------HHHHHHHHHHhcC----CCCccchhheecccccCCCCceEEEEeccccc-CHHHHH---cCCCCH
Confidence                 0001      1222333222221    1111222222211     12345899999975 444432   223444


Q ss_pred             HHHHHHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004254          436 KRLGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (765)
Q Consensus       436 ~~ia~~li--~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l  513 (765)
                      ..+...+.  -..+..+|..|++|+|++|+||+++.  ++.++|+|||++...+.....         ..++..+++++.
T Consensus       117 ~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~--~~~~kL~dfg~~~~~~~~~~~---------~~~~~~y~aPE~  185 (342)
T cd07879         117 DKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNE--DCELKILDFGLARHADAEMTG---------YVVTRWYRAPEV  185 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECC--CCCEEEeeCCCCcCCCCCCCC---------ceeeecccChhh
Confidence            43333322  23467889999999999999999986  899999999998876443211         112344566666


Q ss_pred             HHc-CCCCCCCCHHHHHHHHHHHH
Q 004254          514 VQM-GVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       514 ~~l-G~~~~~~D~~~l~~~~~~~l  536 (765)
                      ... .......|++++.-.+.+++
T Consensus       186 ~~~~~~~~~~~Dv~slGvil~el~  209 (342)
T cd07879         186 ILNWMHYNQTVDIWSVGCIMAEML  209 (342)
T ss_pred             hcCccccCchHHHHHHHHHHHHHH
Confidence            543 23556789999887666554

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.26  E-value=2.3e-11  Score=126.47  Aligned_cols=120  Identities=13%  Similarity=0.042  Sum_probs=80.2

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCC------CcEEEE
Q 004254          407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNG------GRLIFY  478 (765)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~------g~l~Li  478 (765)
                      ....+++|||++|++|.++........+...+...+  +-..+..+|..|++|+|++|.||++++.+.      +.++++
T Consensus        71 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~  150 (258)
T cd05078          71 GDESIMVQEYVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLS  150 (258)
T ss_pred             CCCcEEEEecCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEec
Confidence            356799999999999988754333334444333222  233467889999999999999999985211      137899


Q ss_pred             eecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHHHHH
Q 004254          479 DFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       479 DFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~~~~l  536 (765)
                      |||.+....+...          ..++..+++++...- +..+...|++++...+.+++
T Consensus       151 d~g~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~  199 (258)
T cd05078         151 DPGISITVLPKEI----------LLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIF  199 (258)
T ss_pred             ccccccccCCchh----------ccccCCccCchhccCCCCCCchhhHHHHHHHHHHHH
Confidence            9998876544211          234455677776653 34566789999887665543

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.26  E-value=5.4e-11  Score=128.65  Aligned_cols=190  Identities=16%  Similarity=0.094  Sum_probs=113.6

Q ss_pred             ccccc--ceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          300 PIAAA--SLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       300 PIgsa--SiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      -||.|  +++.||+++.  +|+.||||..+.....                                  ++....+.   
T Consensus         5 ~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~----------------------------------~~~~~~~~---   47 (327)
T cd08227           5 VIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACT----------------------------------NEMVTFLQ---   47 (327)
T ss_pred             hccccccceEEEEEEeecccCcEEEEEEechhhcc----------------------------------HHHHHHHH---
Confidence            47777  8899999998  6999999977332110                                  01111122   


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHH--HHHHHHHHh
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAV--ESYLEQILS  452 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~li--~~~L~qi~~  452 (765)
                         .|...+..    +. +++|.-..-+....+..++||||++|+++.++.... ..+++...+...+.  ...+..+|.
T Consensus        48 ---~e~~~l~~----l~-hpniv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~  119 (327)
T cd08227          48 ---GELHVSKL----FN-HPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHH  119 (327)
T ss_pred             ---HHHHHHHh----cC-CCCeeeEEEEEEECCEEEEEEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence               23332222    22 233322222333456679999999999999875422 22345444444332  234788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChh-hHHHHHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCCHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN-IREGLLEAFYGIYEKDADKVLQAMVQMG--VLVPTGDTTAVR  529 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~-~r~~l~~l~~ai~~~D~~~i~~~l~~lG--~~~~~~D~~~l~  529 (765)
                      .|++|+|+||.||+++.  ++++++.|||....+... .+.....-+.....+...+++++....+  ..++..|++++.
T Consensus       120 ~~iiH~dlkp~Nil~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG  197 (327)
T cd08227         120 MGYVHRSVKASHILISV--DGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVG  197 (327)
T ss_pred             CCEecCCCChhhEEEec--CCcEEEcccchhhccccccccccccccccccccceecccChHHhhcccCCCCchhhHHHHH
Confidence            99999999999999986  789999999865543221 1111100000111223446777776542  356678999998


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       198 ~il~el~  204 (327)
T cd08227         198 ITACELA  204 (327)
T ss_pred             HHHHHHH
Confidence            7766554

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.26  E-value=4.6e-11  Score=126.37  Aligned_cols=186  Identities=15%  Similarity=0.102  Sum_probs=115.9

Q ss_pred             cccccccceeEEEEEEe-------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      .+.+|.|++|.||++..       ++..||||..+-...                                    ..   
T Consensus        10 ~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~------------------------------------~~---   50 (288)
T cd05093          10 KRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASD------------------------------------NA---   50 (288)
T ss_pred             ccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCH------------------------------------HH---
Confidence            35799999999999985       245688886521100                                    00   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh------------cCCCHHHH
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE------------LGVDRKRL  438 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~------------~g~d~~~i  438 (765)
                         .-++.+|+..+.++    . ++++....-+.......+++|||++|++|.++.....            ..++...+
T Consensus        51 ---~~~~~~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~  122 (288)
T cd05093          51 ---RKDFHREAELLTNL----Q-HEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQM  122 (288)
T ss_pred             ---HHHHHHHHHHHHhC----C-CCCcceEEEEEecCCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHH
Confidence               11344454444443    2 2333222222334567799999999999987653211            11333333


Q ss_pred             HHHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004254          439 GRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  516 (765)
Q Consensus       439 a~~li--~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l  516 (765)
                      ...+.  -..+..+|..|++|+|++|.||++++  ++.++++|||++..+........    .........+++++....
T Consensus       123 ~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~  196 (288)
T cd05093         123 LHIAQQIAAGMVYLASQHFVHRDLATRNCLVGE--NLLVKIGDFGMSRDVYSTDYYRV----GGHTMLPIRWMPPESIMY  196 (288)
T ss_pred             HHHHHHHHHHHHHHHhCCeeecccCcceEEEcc--CCcEEeccCCccccccCCceeec----CCCCCccccccCHHHhcc
Confidence            33332  23467889999999999999999986  88999999999886643211000    000112345778887776


Q ss_pred             CCCCCCCCHHHHHHHHHHHH
Q 004254          517 GVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       517 G~~~~~~D~~~l~~~~~~~l  536 (765)
                      +..++..|++++...+.+++
T Consensus       197 ~~~~~~sDiwslG~il~~l~  216 (288)
T cd05093         197 RKFTTESDVWSLGVVLWEIF  216 (288)
T ss_pred             CCCCchhhHHHHHHHHHHHH
Confidence            77777889999987665543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.26  E-value=5.2e-11  Score=119.80  Aligned_cols=176  Identities=20%  Similarity=0.203  Sum_probs=113.3

Q ss_pred             ceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 004254          305 SLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAA  382 (765)
Q Consensus       305 SiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~  382 (765)
                      ++|+||+|+.  +|+.|++|+.+.+....-                                         .-++..|++
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-----------------------------------------~~~~~~e~~   39 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKK-----------------------------------------RERILREIS   39 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccH-----------------------------------------HHHHHHHHH
Confidence            5899999999  489999999865432110                                         113344444


Q ss_pred             HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCC
Q 004254          383 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADP  460 (765)
Q Consensus       383 Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~GffHaDp  460 (765)
                      .+.++     +++++.-+.-+.......+++|||+++.+|.++..... ..+...+...+..  ..+..+|..|++|+|+
T Consensus        40 ~~~~l-----~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i  113 (244)
T smart00220       40 ILKKL-----KHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKKRG-RLSEDEARFYARQILSALEYLHSNGIIHRDL  113 (244)
T ss_pred             HHHhC-----CCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHcCeecCCc
Confidence            44433     11222111111122356799999999999988654322 1444444433322  3467889999999999


Q ss_pred             CCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          461 HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       461 HPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +|.||++++  ++.++++|||.+..+.....       .........++.++....+..++..|++++...+..++
T Consensus       114 ~~~ni~~~~--~~~~~l~d~~~~~~~~~~~~-------~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~  180 (244)
T smart00220      114 KPENILLDE--DGHVKLADFGLARQLDPGGL-------LTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELL  180 (244)
T ss_pred             CHHHeEECC--CCcEEEccccceeeeccccc-------cccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHH
Confidence            999999986  78999999999998876431       11123455566777776666777889998876554443

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.26  E-value=1.5e-10  Score=119.45  Aligned_cols=184  Identities=13%  Similarity=0.134  Sum_probs=117.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCC-chhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPG-LKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~-i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      +.+|+|++|.||.++.  +|+.||||..... ...                                  .       ..-
T Consensus         6 ~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~-------~~~   44 (256)
T cd08218           6 KKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSP----------------------------------K-------ERE   44 (256)
T ss_pred             EEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCCh----------------------------------H-------HHH
Confidence            6799999999999998  6899999976210 000                                  0       001


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHH--HHHHHHHHh
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAV--ESYLEQILS  452 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li--~~~L~qi~~  452 (765)
                      ++.+|...+.++.     ++++.-..-+.+.....++||||++|++|.+...... ...+...+...+.  ...+..+|.
T Consensus        45 ~~~~e~~~l~~l~-----~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~  119 (256)
T cd08218          45 ESRKEVAVLSNMK-----HPNIVQYQESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHD  119 (256)
T ss_pred             HHHHHHHHHHhCC-----CCCeeeeEeeecCCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            2334444333332     2332211112233456799999999999987653322 2334444333322  233677899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      .|++|+|++|.||+++.  ++.++++|||++..+.......      ....+...++.++...-+..+...|++++...+
T Consensus       120 ~~i~h~~l~~~nil~~~--~~~~~l~d~~~~~~~~~~~~~~------~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~  191 (256)
T cd08218         120 RKILHRDIKSQNIFLTK--DGTIKLGDFGIARVLNSTVELA------RTCIGTPYYLSPEICENRPYNNKSDIWALGCVL  191 (256)
T ss_pred             CCEecCCCCHHHEEEcC--CCCEEEeeccceeecCcchhhh------hhccCCccccCHHHhCCCCCCCccchhHHHHHH
Confidence            99999999999999986  7899999999998776533211      111245556777777666667778999988665


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       192 ~~l~  195 (256)
T cd08218         192 YEMC  195 (256)
T ss_pred             HHHH
Confidence            5543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.26  E-value=2.8e-11  Score=126.87  Aligned_cols=185  Identities=19%  Similarity=0.224  Sum_probs=115.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|+.  +|+.|+||+.+......                                  +...      .
T Consensus         7 ~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~----------------------------------~~~~------~   46 (288)
T cd07833           7 GVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDE----------------------------------DVKK------T   46 (288)
T ss_pred             EEecccCCeeEEEEEeCCCCcEEEEehhhhhcccc----------------------------------cchh------H
Confidence            5799999999999999  58999999774322100                                  0111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|.+.+.++.    +..-+.+..++.. ....+++|||++|..+..+.. ...+.+...+...+  +-..+..+|..|
T Consensus        47 ~~~e~~~l~~l~----~~~i~~~~~~~~~-~~~~~iv~e~~~~~~l~~~~~-~~~~~~~~~~~~~~~~i~~~l~~LH~~~  120 (288)
T cd07833          47 ALREVKVLRQLR----HENIVNLKEAFRR-KGRLYLVFEYVERTLLELLEA-SPGGLPPDAVRSYIWQLLQAIAYCHSHN  120 (288)
T ss_pred             HHHHHHHHHhcC----CCCeeehhheEEE-CCEEEEEEecCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            233444444332    2222223333322 455799999999977765432 22334444443333  233477889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|++|+||++++  ++.++|+|||++..+..........     ..+...++++++.... ..+...|++++...+.
T Consensus       121 i~H~dl~~~ni~~~~--~~~~kl~d~g~~~~~~~~~~~~~~~-----~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~  193 (288)
T cd07833         121 IIHRDIKPENILVSE--SGVLKLCDFGFARALRARPASPLTD-----YVATRWYRAPELLVGDTNYGKPVDVWAIGCIMA  193 (288)
T ss_pred             eecCCCCHHHeEECC--CCCEEEEeeecccccCCCccccccC-----cccccCCcCCchhcCCCCcCchhhHHHHHHHHH
Confidence            999999999999986  8899999999988876544311110     1123345566666554 5566789998876655


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       194 ~l~  196 (288)
T cd07833         194 ELL  196 (288)
T ss_pred             HHH
Confidence            544

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.25  E-value=5.3e-11  Score=125.68  Aligned_cols=185  Identities=16%  Similarity=0.140  Sum_probs=114.4

Q ss_pred             ccccccceeEEEEEEeC-------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||.|++|.||+|...       ...||+|+.+.+....                                        
T Consensus        18 ~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~----------------------------------------   57 (293)
T cd05053          18 KPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEK----------------------------------------   57 (293)
T ss_pred             eEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHH----------------------------------------
Confidence            68999999999999972       2679999875432111                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDR  435 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~  435 (765)
                       ...++.+|..-+.++.    +++++ .+...+ ......+++|||++|++|.++.....               ..++.
T Consensus        58 -~~~~~~~E~~~l~~l~----~h~~i~~~~~~~-~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~  131 (293)
T cd05053          58 -DLSDLVSEMEMMKMIG----KHKNIINLLGVC-TQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQ  131 (293)
T ss_pred             -HHHHHHHHHHHHHhhc----CCCCeeeEEEEE-cCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCH
Confidence             0112334444333331    22332 222222 33456799999999999988653211               11233


Q ss_pred             HHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004254          436 KRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (765)
Q Consensus       436 ~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l  513 (765)
                      ..+...+  +-..+..+|..|++|+|++|.||++++  ++.++|+|||++..+.........    ........+++++.
T Consensus       132 ~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~~~--~~~~kL~Dfg~~~~~~~~~~~~~~----~~~~~~~~y~aPE~  205 (293)
T cd05053         132 KDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVTE--DHVMKIADFGLARDIHHIDYYRKT----TNGRLPVKWMAPEA  205 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccccceeeEEEcC--CCeEEeCccccccccccccceecc----CCCCCCccccCHHH
Confidence            3332222  223467889999999999999999986  889999999998876542210000    00011234566776


Q ss_pred             HHcCCCCCCCCHHHHHHHHHHH
Q 004254          514 VQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       514 ~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      ...+..+...|++++.-.+.++
T Consensus       206 ~~~~~~~~~~Di~slG~il~el  227 (293)
T cd05053         206 LFDRVYTHQSDVWSFGVLLWEI  227 (293)
T ss_pred             hccCCcCcccceeehhhHHHHH
Confidence            6666667778999988765544

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.25  E-value=3.4e-11  Score=126.32  Aligned_cols=184  Identities=19%  Similarity=0.228  Sum_probs=110.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|+||+|..  +|+.||+|+........                                  ...+      +
T Consensus         7 ~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~----------------------------------~~~~------~   46 (286)
T cd07846           7 GLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDK----------------------------------MVKK------I   46 (286)
T ss_pred             eeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcc----------------------------------hhhH------H
Confidence            6799999999999999  48999999763211100                                  0011      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|.+-+.++    .+..-+.+...+ ......+++|||++|..+.++... ..+.+...+...+.+  ..+..+|..|
T Consensus        47 ~~~e~~~l~~l----~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~~i~~~l~~LH~~~  120 (286)
T cd07846          47 AMREIRMLKQL----RHENLVNLIEVF-RRKKRLYLVFEFVDHTVLDDLEKY-PNGLDESRVRKYLFQILRGIEFCHSHN  120 (286)
T ss_pred             HHHHHHHHHhc----CCcchhhHHHhc-ccCCeEEEEEecCCccHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            22232222222    111111122222 223457999999999988876432 223455544443333  3467889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|++|+||++++  ++.++++|||++..+...... ...     ..+...+++++.... .......|++++...+.
T Consensus       121 i~h~~l~p~ni~~~~--~~~~~l~dfg~~~~~~~~~~~-~~~-----~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~  192 (286)
T cd07846         121 IIHRDIKPENILVSQ--SGVVKLCDFGFARTLAAPGEV-YTD-----YVATRWYRAPELLVGDTKYGRAVDIWAVGCLVT  192 (286)
T ss_pred             ccccCCCHHHEEECC--CCcEEEEeeeeeeeccCCccc-cCc-----ccceeeccCcHHhccccccCchHhHHHHHHHHH
Confidence            999999999999986  889999999998877553321 100     112334455555432 23445679998887665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       193 el~  195 (286)
T cd07846         193 EML  195 (286)
T ss_pred             HHH
Confidence            554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.25  E-value=7.5e-11  Score=122.85  Aligned_cols=191  Identities=16%  Similarity=0.086  Sum_probs=116.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.|++|+...+......                               .+      ..-+
T Consensus         8 ~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~-------------------------------~~------~~~~   50 (264)
T cd06653           8 KLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQET-------------------------------SK------EVNA   50 (264)
T ss_pred             eeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchh-------------------------------hH------HHHH
Confidence            6799999999999998  5999999976332111000                               00      1113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~  453 (765)
                      +.+|+..+.++.    +..-+.+...+.+. ....+++|||++|++|.+..... ...+...+...  .+...+..+|..
T Consensus        51 ~~~ei~~l~~l~----h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~~i~~al~~LH~~  125 (264)
T cd06653          51 LECEIQLLKNLR----HDRIVQYYGCLRDPEEKKLSIFVEYMPGGSIKDQLKAY-GALTENVTRRYTRQILQGVSYLHSN  125 (264)
T ss_pred             HHHHHHHHHHcC----CCCcceEEEEEEcCCCCEEEEEEEeCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            445555444442    21112222222221 23468999999999998764321 12333322222  223346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|++|+||+++.  ++.+++.|||.+..+.........   .....+...++++++......++..|++++...+.
T Consensus       126 ~i~H~dl~p~ni~i~~--~~~~~l~dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~  200 (264)
T cd06653         126 MIVHRDIKGANILRDS--AGNVKLGDFGASKRIQTICMSGTG---IKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVV  200 (264)
T ss_pred             CEecCCCCHHHEEEcC--CCCEEECccccccccccccccCcc---ccccCCcccccCHhhhcCCCCCccccHHHHHHHHH
Confidence            9999999999999985  789999999999876431110000   00112345566777776655667789999887665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       201 ~l~  203 (264)
T cd06653         201 EML  203 (264)
T ss_pred             HHH
Confidence            544

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.25  E-value=6e-11  Score=129.40  Aligned_cols=198  Identities=21%  Similarity=0.231  Sum_probs=116.0

Q ss_pred             HhCCChhhhhcccC-cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccch
Q 004254          284 ELGAPLDDVFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDW  360 (765)
Q Consensus       284 elG~~~eeiF~~fd-~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~  360 (765)
                      +.++...++...|. ..+||+|++|+||+|+.  +|+.||||+........                             
T Consensus         5 ~~~~~~~~~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~-----------------------------   55 (343)
T cd07851           5 ELNKTVWEVPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSA-----------------------------   55 (343)
T ss_pred             hhccceecccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchh-----------------------------
Confidence            34444444444554 37899999999999999  58999999874321110                             


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHH
Q 004254          361 VAIYDECASVLYQEIDYTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRL  438 (765)
Q Consensus       361 ~~i~~E~~~~l~~ElDf~~EA~--Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~i  438 (765)
                           +....+.+|++......  |+..+...+..       .-........++||||+ |.+|.++...  ..++...+
T Consensus        56 -----~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~~~~~~~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~  120 (343)
T cd07851          56 -----IHAKRTYRELRLLKHMDHENVIGLLDVFTP-------ASSLEDFQDVYLVTHLM-GADLNNIVKC--QKLSDDHI  120 (343)
T ss_pred             -----hHHHHHHHHHHHHHhccCCCHHHHHHHhhc-------cccccccccEEEEEecC-CCCHHHHHhc--CCCCHHHH
Confidence                 00011112222221111  22222221111       10001223479999999 5577776432  23444443


Q ss_pred             HHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004254          439 GRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  516 (765)
Q Consensus       439 a~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l  516 (765)
                      ...+  +-..+..+|..|++|+|++|.||++++  ++.++|+|||++..+......         ......+++++....
T Consensus       121 ~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~--~~~~kL~dfg~~~~~~~~~~~---------~~~~~~y~aPE~~~~  189 (343)
T cd07851         121 QFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNE--DCELKILDFGLARHTDDEMTG---------YVATRWYRAPEIMLN  189 (343)
T ss_pred             HHHHHHHHHHHHHHHHCCeecCCCCHHHeEECC--CCCEEEccccccccccccccC---------CcccccccCHHHHhC
Confidence            3332  223467889999999999999999986  889999999999877543211         112334556666543


Q ss_pred             C-CCCCCCCHHHHHHHHHHHH
Q 004254          517 G-VLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       517 G-~~~~~~D~~~l~~~~~~~l  536 (765)
                      + ..+...|++++.-.+.+++
T Consensus       190 ~~~~~~~~DvwslGv~l~ell  210 (343)
T cd07851         190 WMHYNQTVDIWSVGCIMAELL  210 (343)
T ss_pred             CCCCCchHhHHHHHHHHHHHH
Confidence            2 3456789999887665554

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.25  E-value=3.2e-11  Score=126.04  Aligned_cols=186  Identities=18%  Similarity=0.182  Sum_probs=112.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|+||+|+.  +|+.||||+.+......                                  +.      ..+
T Consensus         5 ~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~----------------------------------~~------~~~   44 (287)
T cd07840           5 AQIGEGTYGQVYKARNKKTGELVALKKIRMENEKE----------------------------------GF------PIT   44 (287)
T ss_pred             EEeccCCCeEEEEEEECCCCeEEEEEEEecccccc----------------------------------cc------hHH
Confidence            5689999999999998  58999999886542100                                  00      113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      +..|...+..+.    +..-+.+..++... ....+++|||+++ ++.++........+...+...+.  -..+..+|..
T Consensus        45 ~~~e~~~l~~l~----~~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~  119 (287)
T cd07840          45 AIREIKLLQKLR----HPNIVRLKEIVTSKGKGSIYMVFEYMDH-DLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSN  119 (287)
T ss_pred             HHHHHHHHHhcc----CCCeeeheeeEecCCCCcEEEEeccccc-cHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            344444444442    21222333333322 2568999999987 66665432222344443333322  2336788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~-lG~~~~~~D~~~l~~~~  532 (765)
                      |++|+|++|+||++++  ++.++++|||++..+..........     ...+..++.++... ....++..|++++...+
T Consensus       120 ~~~h~dl~p~nil~~~--~~~~~l~d~g~~~~~~~~~~~~~~~-----~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l  192 (287)
T cd07840         120 GILHRDIKGSNILINN--DGVLKLADFGLARPYTKRNSADYTN-----RVITLWYRPPELLLGATRYGPEVDMWSVGCIL  192 (287)
T ss_pred             CceeccCcHHHeEEcC--CCCEEEccccceeeccCCCcccccc-----cccccccCCceeeEccccCChHHHHHHHHHHH
Confidence            9999999999999986  8899999999998876543211100     01123344454322 22345667888887666


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       193 ~el~  196 (287)
T cd07840         193 AELF  196 (287)
T ss_pred             HHHH
Confidence            5544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.24  E-value=1.1e-10  Score=116.91  Aligned_cols=184  Identities=20%  Similarity=0.171  Sum_probs=113.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++|++|++|+||+|..  +++.|+||+.+.....                                         ...-+
T Consensus         5 ~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~-----------------------------------------~~~~~   43 (225)
T smart00221        5 KKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTE-----------------------------------------KQREE   43 (225)
T ss_pred             eEeecCCCeEEEEEEEcCCCcEEEEEeeccccch-----------------------------------------HHHHH
Confidence            6899999999999999  3799999988553221                                         00113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|+..+.++.     ++++.-...+.......+++|||++|.+|.++........+...+......  ..+..+|..|
T Consensus        44 ~~~e~~~~~~~~-----~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~  118 (225)
T smart00221       44 FLREIRILKKLK-----HPNIVKLYGVFEDPEPLYLVMEYCEGGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSLG  118 (225)
T ss_pred             HHHHHHHHHhCC-----CCChhhheeeeecCCceEEEEeccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            344554444441     222222222223346789999999999998875432211343333333222  2367789999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH-HcCCCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV-QMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~-~lG~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|++|.||++++  ++.++++|||.+..+....-...     ........++.+++. .....++..|++++...+.
T Consensus       119 i~h~di~~~ni~v~~--~~~~~l~d~g~~~~~~~~~~~~~-----~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~  191 (225)
T smart00221      119 IVHRDLKPENILLGM--DGLVKLADFGLARFIHRDLAALL-----KTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILY  191 (225)
T ss_pred             eecCCCCHHHEEEcC--CCCEEEeeCceeeEecCcccccc-----cceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHH
Confidence            999999999999986  68999999999988765420000     001122334455554 3334445678888776544


Q ss_pred             HH
Q 004254          534 FF  535 (765)
Q Consensus       534 ~~  535 (765)
                      ++
T Consensus       192 ~l  193 (225)
T smart00221      192 EL  193 (225)
T ss_pred             HH
Confidence            43

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.24  E-value=3.3e-11  Score=134.39  Aligned_cols=186  Identities=14%  Similarity=0.134  Sum_probs=133.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +-+|.|+||-++..+.  ++..+|+|..+=.                                  ...+..++...+|++
T Consensus        10 ~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~----------------------------------~~t~~~r~~A~~E~~   55 (426)
T KOG0589|consen   10 RQVGRGAFGSALLVRHKSDDKLYVLKKINLE----------------------------------KLTEPERRSAIQEMD   55 (426)
T ss_pred             hhcCccccchhhhhhhccCCceEEEEEEecc----------------------------------ccCchhhHHHHHHHH
Confidence            5699999999988887  5789999976210                                  011112223333433


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHHHH--HHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVESY--LEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li~~~--L~qi~~~  453 (765)
                      +      +.+    +.+..-|..+..+.+-..-.++||+|++|+++.+...-.+ .-+..+++....++..  +..+|+.
T Consensus        56 l------is~----~~hP~iv~y~ds~~~~~~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~  125 (426)
T KOG0589|consen   56 L------LSK----LLHPNIVEYKDSFEEDGQLLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHEN  125 (426)
T ss_pred             H------HHh----ccCCCeeeeccchhcCCceEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhh
Confidence            3      222    3343344555544443333899999999999999654333 4466788888777654  7789999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      .++|+|+|+.|||++.  ++.|+|-|||+++.+.++.  .+    ..-+-+++.++.+++++---.....|++++.-.++
T Consensus       126 ~iLHRDlK~~Nifltk--~~~VkLgDfGlaK~l~~~~--~~----a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~y  197 (426)
T KOG0589|consen  126 RVLHRDLKCANIFLTK--DKKVKLGDFGLAKILNPED--SL----ASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLY  197 (426)
T ss_pred             hhhcccchhhhhhccc--cCceeecchhhhhhcCCch--hh----hheecCCCcccCHHHhCCCCCCccCcchhhcchHH
Confidence            9999999999999996  8889999999999998875  22    23345799999999998766677889999988776


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      ++.
T Consensus       198 Em~  200 (426)
T KOG0589|consen  198 EMC  200 (426)
T ss_pred             HHH
Confidence            654

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.24  E-value=4.1e-11  Score=143.01  Aligned_cols=143  Identities=20%  Similarity=0.263  Sum_probs=91.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|..  +|+.||||+.+......                                 ......      
T Consensus        10 ~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~---------------------------------~~~~~~------   50 (669)
T cd05610          10 KPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMIN---------------------------------KNMVHQ------   50 (669)
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEehhhccC---------------------------------HHHHHH------
Confidence            6899999999999999  59999999874321000                                 001111      


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +..|...+..+     .+++|.-...........+|||||++|+.|.++.... ..++...+...+  +-..+.++|..|
T Consensus        51 ~~~E~~~l~~l-----~hp~Iv~~~~~~~~~~~~~lVmEy~~g~~L~~li~~~-~~l~~~~~~~i~~qil~aL~yLH~~g  124 (669)
T cd05610          51 VQAERDALALS-----KSPFIVHLYYSLQSANNVYLVMEYLIGGDVKSLLHIY-GYFDEEMAVKYISEVALALDYLHRHG  124 (669)
T ss_pred             HHHHHHHHHhc-----CCCCcCeEEEEEEECCEEEEEEeCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            22233333222     1233222222223345679999999999998875321 122322222222  223478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (765)
                      ++|+|+||.|||++.  ++.++|+|||++.....
T Consensus       125 IiHrDLKP~NILl~~--~g~vkL~DFGls~~~~~  156 (669)
T cd05610         125 IIHRDLKPDNMLISN--EGHIKLTDFGLSKVTLN  156 (669)
T ss_pred             EEeCCccHHHEEEcC--CCCEEEEeCCCCccccC
Confidence            999999999999985  88999999999986543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.24  E-value=6.5e-11  Score=124.99  Aligned_cols=186  Identities=17%  Similarity=0.170  Sum_probs=109.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+......                           +       .      .-+
T Consensus         7 ~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~---------------------------~-------~------~~~   46 (295)
T cd07837           7 EKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEE---------------------------G-------I------PPT   46 (295)
T ss_pred             eEecccCCeEEEEEEECCCCcEEEEEeehhhcccc---------------------------C-------C------chH
Confidence            5699999999999998  68999999873321110                           0       0      012


Q ss_pred             HHHHHHHHHHHHHhcCCCCc-cccceeeeccCC----CeEEEEeecCCCChhhhhhhhh----cCCCHHHHHHHHH--HH
Q 004254          377 YTQEAANAELFASNFKDMDY-VKVPTIFWEYTT----PQILTMEYVPGIKINRIQSLDE----LGVDRKRLGRYAV--ES  445 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~-V~vP~vy~e~st----~~vLVMEyieG~~L~d~~~l~~----~g~d~~~ia~~li--~~  445 (765)
                      +.+|...+..+.    ++++ +.+..++.....    ..+++|||++| .+.+......    ..++...+...+.  -.
T Consensus        47 ~~~E~~~l~~l~----~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~  121 (295)
T cd07837          47 ALREISLLQMLS----ESIYIVRLLDVEHVEEKNGKPSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLK  121 (295)
T ss_pred             HHHHHHHHHHcc----CCCCccceeeeEeecCCCCCceEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHH
Confidence            233444343332    2222 222222221111    25899999998 5665432211    1234444433332  23


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCC
Q 004254          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGD  524 (765)
Q Consensus       446 ~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D  524 (765)
                      .+..+|..|++|+|++|+||+++. .++.++++|||++..+.........      ....+.+++++.... ...++..|
T Consensus       122 ~L~~LH~~~i~H~dl~~~nil~~~-~~~~~kl~dfg~~~~~~~~~~~~~~------~~~~~~~~aPE~~~~~~~~~~~~D  194 (295)
T cd07837         122 GVAHCHKHGVMHRDLKPQNLLVDK-QKGLLKIADLGLGRAFSIPVKSYTH------EIVTLWYRAPEVLLGSTHYSTPVD  194 (295)
T ss_pred             HHHHHHHCCeeecCCChHHEEEec-CCCeEEEeecccceecCCCccccCC------cccccCCCChHHhhCCCCCCchHH
Confidence            477889999999999999999984 3678999999998876432211000      012334555665432 33466789


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++...+.+++
T Consensus       195 i~slG~~l~~l~  206 (295)
T cd07837         195 IWSVGCIFAEMS  206 (295)
T ss_pred             HHHHHHHHHHHH
Confidence            999887665554

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.24  E-value=9.5e-11  Score=122.21  Aligned_cols=191  Identities=14%  Similarity=0.094  Sum_probs=118.1

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.+|.|++|.||+|..  +|..|++|+.+......-                               ..+      .-.
T Consensus         7 ~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~-------------------------------~~~------~~~   49 (266)
T cd06651           7 GKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPE-------------------------------TSK------EVS   49 (266)
T ss_pred             cceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCch-------------------------------hHH------HHH
Confidence            36899999999999998  589999997743321110                               000      011


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcc-ccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004254          376 DYTQEAANAELFASNFKDMDYV-KVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  451 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~  451 (765)
                      .+.+|...+..+.     ++++ .+...+.+. ....+++|||++|++|.+..... ...+.......+  +...+..+|
T Consensus        50 ~~~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~~~l~~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~LH  123 (266)
T cd06651          50 ALECEIQLLKNLQ-----HERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLKAY-GALTESVTRKYTRQILEGMSYLH  123 (266)
T ss_pred             HHHHHHHHHHHcC-----CCCeeeEEEEEEcCCCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            3445555555442     2332 222333222 23458999999999998865321 123333333222  233467889


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..|++|+|++|.||++++  ++.++|+|||++..+........  . .....+...+++++.......+...|++++...
T Consensus       124 ~~~i~H~~l~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~--~-~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i  198 (266)
T cd06651         124 SNMIVHRDIKGANILRDS--AGNVKLGDFGASKRLQTICMSGT--G-IRSVTGTPYWMSPEVISGEGYGRKADVWSLGCT  198 (266)
T ss_pred             hCCeeeCCCCHHHEEECC--CCCEEEccCCCccccccccccCC--c-cccCCccccccCHHHhCCCCCCchhhhHHHHHH
Confidence            999999999999999985  78999999999876643211100  0 001224455677877766656677899998876


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       199 ~~el~  203 (266)
T cd06651         199 VVEML  203 (266)
T ss_pred             HHHHH
Confidence            65554

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.24  E-value=6e-11  Score=125.01  Aligned_cols=185  Identities=16%  Similarity=0.082  Sum_probs=114.8

Q ss_pred             ccccccceeEEEEEEe-------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      ..+|.|++|.||+|..       ++..|++|....... .                                        
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~-~----------------------------------------   49 (280)
T cd05092          11 WELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASE-S----------------------------------------   49 (280)
T ss_pred             cccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCH-H----------------------------------------
Confidence            5799999999999964       356888986522110 0                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh--------------cCCCHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE--------------LGVDRKR  437 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~--------------~g~d~~~  437 (765)
                       ..-+|.+|.+.+.++.     ++++.-..-+.......+++|||++|++|.++.....              ..++...
T Consensus        50 -~~~~~~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~  123 (280)
T cd05092          50 -ARQDFQREAELLTVLQ-----HQHIVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQ  123 (280)
T ss_pred             -HHHHHHHHHHHHhcCC-----CCCCceEEEEEecCCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHH
Confidence             0114555555444432     2333222223333456799999999999988653211              1123333


Q ss_pred             HHHHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004254          438 LGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (765)
Q Consensus       438 ia~~li--~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~  515 (765)
                      +...+.  -..+..+|..|++|+|++|.||++++  ++.++|.|||++..+.........    ........+++++...
T Consensus       124 ~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~--~~~~kL~dfg~~~~~~~~~~~~~~----~~~~~~~~y~aPE~~~  197 (280)
T cd05092         124 MLAIASQIASGMVYLASLHFVHRDLATRNCLVGQ--GLVVKIGDFGMSRDIYSTDYYRVG----GRTMLPIRWMPPESIL  197 (280)
T ss_pred             HHHHHHHHHHHHHHHHHCCeecccccHhhEEEcC--CCCEEECCCCceeEcCCCceeecC----CCccccccccCHHHhc
Confidence            333222  23367889999999999999999986  889999999998765432211100    0011134567777776


Q ss_pred             cCCCCCCCCHHHHHHHHHHHH
Q 004254          516 MGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       516 lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      .+..++..|++++.-.+.+++
T Consensus       198 ~~~~~~~~Di~slG~il~el~  218 (280)
T cd05092         198 YRKFTTESDIWSFGVVLWEIF  218 (280)
T ss_pred             cCCcCchhhHHHHHHHHHHHH
Confidence            666777789999887665543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.23  E-value=6.6e-11  Score=125.19  Aligned_cols=183  Identities=16%  Similarity=0.111  Sum_probs=114.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|..  +|+.|+||..+......                                  .+      ..+
T Consensus        11 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~~------~~~   50 (293)
T cd07843          11 NRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKE----------------------------------GF------PIT   50 (293)
T ss_pred             hhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccc----------------------------------cc------hhh
Confidence            6899999999999999  58999999774321110                                  00      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccc-cceeeeccC--CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVK-VPTIFWEYT--TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQIL  451 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~-vP~vy~e~s--t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~  451 (765)
                      +.+|...+.++.     ++++. +...+ ...  ...+|+|||++| .|.++.......++...+...+.  -..+..+|
T Consensus        51 ~~~e~~~l~~l~-----h~ni~~~~~~~-~~~~~~~~~lv~e~~~~-~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH  123 (293)
T cd07843          51 SLREINILLKLQ-----HPNIVTVKEVV-VGSNLDKIYMVMEYVEH-DLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLH  123 (293)
T ss_pred             HHHHHHHHHhcC-----CCCEEEEEEEE-EecCCCcEEEEehhcCc-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            333444444442     23322 22221 222  668999999987 67665433222345544444333  23478889


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRR  530 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~  530 (765)
                      ..|++|+|++|+||+++.  ++.++++|||++..+.......      .....+..+++++....+ ..+...|++++..
T Consensus       124 ~~~i~H~dl~p~nili~~--~~~~~l~d~g~~~~~~~~~~~~------~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~  195 (293)
T cd07843         124 DNWILHRDLKTSNLLLNN--RGILKICDFGLAREYGSPLKPY------TQLVVTLWYRAPELLLGAKEYSTAIDMWSVGC  195 (293)
T ss_pred             HCCeeeccCCHHHEEECC--CCcEEEeecCceeeccCCcccc------ccccccccccCchhhcCCccccchhhHHHHHH
Confidence            999999999999999986  7899999999988776532111      001123445666655432 3456679998877


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       196 ~l~~l~  201 (293)
T cd07843         196 IFAELL  201 (293)
T ss_pred             HHHHHH
Confidence            655544

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.23  E-value=1.1e-10  Score=119.84  Aligned_cols=182  Identities=13%  Similarity=0.076  Sum_probs=115.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.|+.|++|.||++..  +|+.++||.........                                  .-      ...
T Consensus         6 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~~------~~~   45 (256)
T cd08530           6 KKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQ----------------------------------KE------RED   45 (256)
T ss_pred             eeecCCCceeEEEEEECCCCCEEEEEEEehhhccH----------------------------------HH------HHH
Confidence            5799999999999988  68999999874321100                                  00      011


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhh---hcCCCHHHHHHHH--HHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYA--VESYLEQI  450 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~---~~g~d~~~ia~~l--i~~~L~qi  450 (765)
                      +..|...+..+    . ++++ .+...+. .....++||||++|.+|.++....   ....+...+...+  +...+..+
T Consensus        46 ~~~e~~~l~~l----~-~~~i~~~~~~~~-~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~l  119 (256)
T cd08530          46 AVNEIRILASV----N-HPNIISYKEAFL-DGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQAL  119 (256)
T ss_pred             HHHHHHHHHhC----C-CCCchhhhhhhc-cCCEEEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            22233322222    1 1221 1222222 235679999999999998864321   1234444443333  22346788


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      |..|++|+|++|.||++++  ++.++|+|||++..+......        ...++..++.++.......++..|++++..
T Consensus       120 h~~~i~h~~l~~~ni~~~~--~~~~kl~d~g~~~~~~~~~~~--------~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~  189 (256)
T cd08530         120 HEQKILHRDLKSANILLVA--NDLVKIGDLGISKVLKKNMAK--------TQIGTPHYMAPEVWKGRPYSYKSDIWSLGC  189 (256)
T ss_pred             hhCCcccCCCCcceEEEec--CCcEEEeeccchhhhccCCcc--------cccCCccccCHHHHCCCCCCchhhHHHHHH
Confidence            9999999999999999986  789999999998877654111        112455667777776666667789998887


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       190 ~~~~l~  195 (256)
T cd08530         190 LLYEMA  195 (256)
T ss_pred             HHHHHH
Confidence            665543

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.22  E-value=1.1e-10  Score=121.92  Aligned_cols=182  Identities=20%  Similarity=0.254  Sum_probs=110.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.+|.|++|+||+|+.  +|+.||||+.+......                                         .+.+
T Consensus         5 ~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~-----------------------------------------~~~~   43 (282)
T cd07831           5 GKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSL-----------------------------------------EQVN   43 (282)
T ss_pred             eeccccccceEEEEEEcCCCcEEEEEEehhccCCc-----------------------------------------hhhh
Confidence            4689999999999998  68999999874322110                                         0001


Q ss_pred             HHHHHHHHHHHHHhcCCCCc-cccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDY-VKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~-V~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~  452 (765)
                      ...|...+.++.    ++++ +.+...+.+- .+..+++|||++| ++.+........++...+...+.+  ..+..+|.
T Consensus        44 ~~~e~~~l~~l~----~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~  118 (282)
T cd07831          44 NLREIQALRRLS----PHPNILRLIEVLFDRKTGRLALVFELMDM-NLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHR  118 (282)
T ss_pred             HHHHHHHHhhcC----CCCCccceEEEEecCCCCcEEEEEecCCc-cHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            122333333332    2232 2333333321 1567999999987 444433221223444444443333  34788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRT  531 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~  531 (765)
                      .|++|+|++|.||++++   +.++++|||++..+.......  .     ..+...+++++.... +..+...|++++.-.
T Consensus       119 ~~i~H~dl~p~ni~l~~---~~~kl~dfg~~~~~~~~~~~~--~-----~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~  188 (282)
T cd07831         119 NGIFHRDIKPENILIKD---DILKLADFGSCRGIYSKPPYT--E-----YISTRWYRAPECLLTDGYYGPKMDIWAVGCV  188 (282)
T ss_pred             CCceecccCHHHEEEcC---CCeEEEecccccccccCCCcC--C-----CCCCcccCChhHhhcCCCCCcchhHHHHHHH
Confidence            99999999999999983   899999999998764322110  0     112344566665433 455667899998866


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       189 l~el~  193 (282)
T cd07831         189 FFEIL  193 (282)
T ss_pred             HHHHH
Confidence            65544

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.22  E-value=4e-11  Score=135.84  Aligned_cols=182  Identities=18%  Similarity=0.170  Sum_probs=126.2

Q ss_pred             ccccccceeEEEEEEe--C-C---eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--K-G---EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~-G---~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +-+|+|.||.||+|++  . +   .+||||..+-.-.                                       ..-.
T Consensus       163 kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~---------------------------------------~~~~  203 (474)
T KOG0194|consen  163 KKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSE---------------------------------------LTKE  203 (474)
T ss_pred             ceeecccccEEEEEEEEecCCceeeeeEEEeeccccc---------------------------------------ccHH
Confidence            6899999999999999  2 3   2389996632000                                       0011


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi  450 (765)
                      +-.+|.+||+-|..+     ++++|.--.-+.-.....+||||+|.|++|.+...-....++..+.......  .-+.++
T Consensus       204 ~~~e~m~EArvMr~l-----~H~NVVr~yGVa~~~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YL  278 (474)
T KOG0194|consen  204 QIKEFMKEARVMRQL-----NHPNVVRFYGVAVLEEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYL  278 (474)
T ss_pred             HHHHHHHHHHHHHhC-----CCCCEEEEEEEEcCCCccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHH
Confidence            234688999887765     2344433333345567889999999999999976543333554444444433  448889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHH-HHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG-LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~-l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      |..+++|||+-.-|+|+..  ++.+++.||||+..-+...... ..       .--..+++++.++.|..++.+|++++.
T Consensus       279 h~k~~IHRDIAARNcL~~~--~~~vKISDFGLs~~~~~~~~~~~~~-------klPirWLAPEtl~~~~~s~kTDV~sfG  349 (474)
T KOG0194|consen  279 HSKNCIHRDIAARNCLYSK--KGVVKISDFGLSRAGSQYVMKKFLK-------KLPIRWLAPETLNTGIFSFKTDVWSFG  349 (474)
T ss_pred             HHCCCcchhHhHHHheecC--CCeEEeCccccccCCcceeeccccc-------cCcceecChhhhccCccccccchhhee
Confidence            9999999999999999985  6678999999977654211111 11       123677889999999999999999887


Q ss_pred             HHHH
Q 004254          530 RTAQ  533 (765)
Q Consensus       530 ~~~~  533 (765)
                      -.+-
T Consensus       350 V~~~  353 (474)
T KOG0194|consen  350 VLLW  353 (474)
T ss_pred             eeEE
Confidence            5443

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.22  E-value=1.1e-10  Score=126.68  Aligned_cols=186  Identities=16%  Similarity=0.097  Sum_probs=112.6

Q ss_pred             ccccccceeEEEEEEeC---------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~---------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (765)
                      ++||.|++|+||.|+..         +..||+|+.+......                                   .. 
T Consensus        18 ~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~-   61 (334)
T cd05100          18 KPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDK-----------------------------------DL-   61 (334)
T ss_pred             ceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHH-----------------------------------HH-
Confidence            68999999999999851         2369999774322110                                   00 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccc-cceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCC
Q 004254          370 VLYQEIDYTQEAANAELFASNFKDMDYVK-VPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGV  433 (765)
Q Consensus       370 ~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~-vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~  433 (765)
                           -++.+|...+.++.    ++++|. +...+ ......+++|||++|++|.++.....               ...
T Consensus        62 -----~~~~~E~~~l~~l~----~h~~iv~~~~~~-~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l  131 (334)
T cd05100          62 -----SDLVSEMEMMKMIG----KHKNIINLLGAC-TQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQL  131 (334)
T ss_pred             -----HHHHHHHHHHHhhc----CCCCeeeeeEEE-ccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccC
Confidence                 12344444444432    223322 22222 22345799999999999988653211               012


Q ss_pred             CHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHH
Q 004254          434 DRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ  511 (765)
Q Consensus       434 d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~  511 (765)
                      ....+...+  +-..+..+|..|++|+|++|.||++++  ++.++|+|||.+..+.........    ........++++
T Consensus       132 ~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nill~~--~~~~kL~Dfg~~~~~~~~~~~~~~----~~~~~~~~y~aP  205 (334)
T cd05100         132 TFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTE--DNVMKIADFGLARDVHNIDYYKKT----TNGRLPVKWMAP  205 (334)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcC--CCcEEECCcccceecccccccccc----cCCCcCceEcCH
Confidence            222222222  223467889999999999999999986  789999999998876542211000    000112346677


Q ss_pred             HHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          512 AMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       512 ~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +....+......|++++...+.+++
T Consensus       206 E~~~~~~~~~~~Di~slG~il~el~  230 (334)
T cd05100         206 EALFDRVYTHQSDVWSFGVLLWEIF  230 (334)
T ss_pred             HHhccCCcCchhhhHHHHHHHHHHH
Confidence            7776666667789999886665543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.21  E-value=1.4e-10  Score=122.84  Aligned_cols=185  Identities=16%  Similarity=0.130  Sum_probs=109.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||..+......                                  +.      .-.
T Consensus         8 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~----------------------------------~~------~~~   47 (294)
T PLN00009          8 EKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDE----------------------------------GV------PST   47 (294)
T ss_pred             EEecCCCCEEEEEEEecCCCcEEEEEehhhccccc----------------------------------cc------hHH
Confidence            6799999999999998  58999999763211000                                  00      012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      +.+|++.+.++.    + +++.-..-+.......++||||+++ .+.+.... .....+...+...+  +-..+..+|..
T Consensus        48 ~~~e~~~l~~l~----h-~~i~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~  121 (294)
T PLN00009         48 AIREISLLKEMQ----H-GNIVRLQDVVHSEKRLYLVFEYLDL-DLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSH  121 (294)
T ss_pred             HHHHHHHHHhcc----C-CCEeeEEEEEecCCeEEEEEecccc-cHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence            334444444442    2 3322222222334567999999976 55543321 11112333322222  23446888999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~  532 (765)
                      |++|+|++|.||+++. .++.++++|||++..+...... +.     .......++.++.... .......|++++...+
T Consensus       122 ~i~H~dl~p~nill~~-~~~~~kl~dfg~~~~~~~~~~~-~~-----~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~  194 (294)
T PLN00009        122 RVLHRDLKPQNLLIDR-RTNALKLADFGLARAFGIPVRT-FT-----HEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIF  194 (294)
T ss_pred             CeeCCCCCcceEEEEC-CCCEEEEcccccccccCCCccc-cc-----cCceeecccCHHHHhCCCCCCcHHHHHHHHHHH
Confidence            9999999999999984 3567999999998765432111 00     0012344566666544 3345678999888766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       195 ~~l~  198 (294)
T PLN00009        195 AEMV  198 (294)
T ss_pred             HHHH
Confidence            5554

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.21  E-value=9e-11  Score=125.42  Aligned_cols=185  Identities=17%  Similarity=0.108  Sum_probs=112.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|..  +|+.||+|+.+......                           ..             ...
T Consensus        13 ~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~---------------------------~~-------------~~~   52 (309)
T cd07845          13 NRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERD---------------------------GI-------------PIS   52 (309)
T ss_pred             eeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCC---------------------------CC-------------cch
Confidence            5799999999999999  59999999874322110                           00             011


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC-CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT-TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s-t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      +.+|...+.++    .+..-+.+..++.+.. ...++||||++| +|.++.......++...+...+  +-..+..+|..
T Consensus        53 ~~~E~~~l~~l----~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~  127 (309)
T cd07845          53 SLREITLLLNL----RHPNIVELKEVVVGKHLDSIFLVMEYCEQ-DLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHEN  127 (309)
T ss_pred             hhHHHHHHHhC----CCCCCcceEEEEecCCCCeEEEEEecCCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            22344433333    2222233444443222 346999999987 5655443222223434333332  23347789999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~  532 (765)
                      |++|+|++|+||++++  ++.++|+|||++..+....... ..     ......+++++...- .......|++++...+
T Consensus       128 ~i~H~dl~p~nil~~~--~~~~kL~dfg~~~~~~~~~~~~-~~-----~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il  199 (309)
T cd07845         128 FIIHRDLKVSNLLLTD--KGCLKIADFGLARTYGLPAKPM-TP-----KVVTLWYRAPELLLGCTTYTTAIDMWAVGCIL  199 (309)
T ss_pred             CeecCCCCHHHEEECC--CCCEEECccceeeecCCccCCC-Cc-----ccccccccChhhhcCCCCcCchHHHHHHHHHH
Confidence            9999999999999986  8899999999998775432110 00     011233556665532 3345667999988766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       200 ~el~  203 (309)
T cd07845         200 AELL  203 (309)
T ss_pred             HHHH
Confidence            6554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.21  E-value=8.3e-11  Score=124.58  Aligned_cols=186  Identities=16%  Similarity=0.134  Sum_probs=109.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.+|.|++|+||+|+.  +|+.||||+.+......                                  .      .+.+
T Consensus        13 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~----------------------------------~------~~~~   52 (302)
T cd07864          13 GQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKE----------------------------------G------FPIT   52 (302)
T ss_pred             eeecccCCEEEEEEEECCCCcEEEEEEEeeccccc----------------------------------C------chHH
Confidence            6799999999999999  58999999875432110                                  0      0112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee---------ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--H
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW---------EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--S  445 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~---------e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~  445 (765)
                      +.+|...+.++.    +..-+.+..++.         +..+..+|+|||++| .+.+.........+...+...+.+  .
T Consensus        53 ~~~e~~~~~~l~----h~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~  127 (302)
T cd07864          53 AIREIKILRQLN----HRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDH-DLMGLLESGLVHFSEDHIKSFMKQLLE  127 (302)
T ss_pred             HHHHHHHHHhCC----CCCeeeeeheecCcchhhhccccCCcEEEEEcccCc-cHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            233433333332    111111111111         112357899999998 444432222223444444433322  3


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCC
Q 004254          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGD  524 (765)
Q Consensus       446 ~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D  524 (765)
                      .+..+|..|++|+|++|+||++++  ++.++|+|||.+..+.......+..     ......++.++.... ...++..|
T Consensus       128 aL~~LH~~~i~H~dl~p~nili~~--~~~~kl~dfg~~~~~~~~~~~~~~~-----~~~~~~y~~PE~~~~~~~~~~~~D  200 (302)
T cd07864         128 GLNYCHKKNFLHRDIKCSNILLNN--KGQIKLADFGLARLYNSEESRPYTN-----KVITLWYRPPELLLGEERYGPAID  200 (302)
T ss_pred             HHHHHHhCCeecCCCCHHHEEECC--CCcEEeCcccccccccCCccccccc-----ceeccCccChHHhcCCCCCCchhH
Confidence            467889999999999999999986  7899999999998775433211100     011233455555432 23456789


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++...+.+++
T Consensus       201 i~slG~~~~el~  212 (302)
T cd07864         201 VWSCGCILGELF  212 (302)
T ss_pred             HHHHHHHHHHHH
Confidence            998876655544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.21  E-value=1.5e-10  Score=120.95  Aligned_cols=183  Identities=19%  Similarity=0.205  Sum_probs=112.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|..  +|+.|++|..++.....                                  ....      +
T Consensus         5 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~~~~------~   44 (283)
T cd05118           5 GKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESE----------------------------------GIPK------T   44 (283)
T ss_pred             eeeecCCCceEEEEEcCCCCcEEEEEEeccccccc----------------------------------hhHH------H
Confidence            4799999999999998  58999999875433211                                  0001      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHH---HHHHHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG---RYAVESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia---~~li~~~L~qi~~~  453 (765)
                      +..|...+.++.    +..-+.+...+ ......+++|||+++ ++.+.........+...+.   ..++ ..+..+|..
T Consensus        45 ~~~e~~~l~~l~----~~~i~~~~~~~-~~~~~~~~v~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~~i~-~~l~~LH~~  117 (283)
T cd05118          45 ALREIKLLKELN----HPNIIKLLDVF-RHKGDLYLVFEFMDT-DLYKLIKDRQRGLPESLIKSYLYQLL-QGLAFCHSH  117 (283)
T ss_pred             HHHHHHHHHHhc----CCCcchHHHhh-ccCCCEEEEEeccCC-CHHHHHHhhcccCCHHHHHHHHHHHH-HHHHHHHHC
Confidence            222333333322    11111222222 223567999999987 5655433222233433332   2333 346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~~~  532 (765)
                      |++|+|+||.||++++  ++.++++|||.+..+...... +.     ....+..++.+++.... ..+...|++++...+
T Consensus       118 ~i~H~dl~p~nili~~--~~~~~l~df~~~~~~~~~~~~-~~-----~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l  189 (283)
T cd05118         118 GILHRDLKPENLLINT--EGVLKLADFGLARSFGSPVRP-YT-----HYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIF  189 (283)
T ss_pred             CeeecCcCHHHEEECC--CCcEEEeeeeeeEecCCCccc-cc-----CccCcccccCcHHHhcCCCCCchhHHHHHHHHH
Confidence            9999999999999985  789999999999888665411 10     01233445556665544 556678999988766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       190 ~~l~  193 (283)
T cd05118         190 AELL  193 (283)
T ss_pred             HHHH
Confidence            5544

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>PRK10345 hypothetical protein; Provisional

Probab=99.20  E-value=1.3e-10  Score=119.74  Aligned_cols=142  Identities=10%  Similarity=0.103  Sum_probs=89.5

Q ss_pred             cccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      .++||+|+++.||.-..++.. +||+.+++-...                                    .+      ++
T Consensus         7 ~~~LG~G~~~~Vy~hp~~~~k-~IKv~~~~~~~~------------------------------------~~------~~   43 (210)
T PRK10345          7 QSPLGTGRHRKCYAHPEDAQR-CIKIVYHRGDGG------------------------------------DK------EI   43 (210)
T ss_pred             cceecCCCceEEEECCCCcCe-EEEEEeccccch------------------------------------HH------HH
Confidence            478999999999962224555 699886532110                                    01      23


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCe------EEEEee--cCCCChhhhhhhhhcCCCH-HHHHHHHHHHHHH
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQ------ILTMEY--VPGIKINRIQSLDELGVDR-KRLGRYAVESYLE  448 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~------vLVMEy--ieG~~L~d~~~l~~~g~d~-~~ia~~li~~~L~  448 (765)
                      .+|.+-+..+.+.-.+  +-.++++|..+.+..      .++|||  ++|++|.++..-.  ..+. ......++..+++
T Consensus        44 ~rEi~~l~~L~~~~~~--h~nIvr~yg~~et~~g~g~v~~~I~e~~G~~~~tL~~~l~~~--~~~e~~~~~~~~L~~l~~  119 (210)
T PRK10345         44 RRELKYYAHLSRRLID--WSGIPRYYGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQC--RYEEDVAQLRQLLKKLKR  119 (210)
T ss_pred             HHHHHHHHHhhccCCC--CcccceeeEEEEeCCCCeEEEEEEecCCCCcchhHHHHHHcc--cccHhHHHHHHHHHHHHH
Confidence            4444444444332222  334677776555542      278999  5579999876432  2222 2234556667778


Q ss_pred             HHHhCCccccCCCCCcEEEeecC--CCcEEEEeecceecc
Q 004254          449 QILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSI  486 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~--~g~l~LiDFGlv~~L  486 (765)
                      .+|.+|++|+|+||.||+++..+  +++++|+||+-...+
T Consensus       120 yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~~~  159 (210)
T PRK10345        120 YLLDNRIVTMELKPQNILCQRISESEVIPVVCDNIGESTF  159 (210)
T ss_pred             HHHHCCEeecCCCHHHEEEeccCCCCCcEEEEECCCCcce
Confidence            99999999999999999997422  347999994444433

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.20  E-value=3.7e-11  Score=126.15  Aligned_cols=184  Identities=17%  Similarity=0.182  Sum_probs=109.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++||.|++|+||+|+.  +|+.||||+.+......                                  +.      +-.
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~~------~~~   45 (284)
T cd07860           6 EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE----------------------------------GV------PST   45 (284)
T ss_pred             eeecCCCceEEEEEEECCCCCEEEEEEcccccccc----------------------------------cc------chH
Confidence            6899999999999998  68999999774321100                                  00      012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~li~--~~L~qi~~~  453 (765)
                      +.+|++.+.++.    +..-+.+...+ ......+++|||+++ .+.+..... ...++...+...+.+  ..+..+|..
T Consensus        46 ~~~E~~~l~~l~----h~~i~~~~~~~-~~~~~~~~v~e~~~~-~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~  119 (284)
T cd07860          46 AIREISLLKELN----HPNIVKLLDVI-HTENKLYLVFEFLHQ-DLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSH  119 (284)
T ss_pred             HHHHHHHHHhcC----CCCCcchhhhc-ccCCcEEEEeecccc-CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            334444444432    11112222222 234567999999975 566544322 223444444433322  346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~  532 (765)
                      |++|+|++|+||++++  ++.++++|||++..+..........      .....+++++.... ...+...|++++...+
T Consensus       120 ~i~H~~l~p~nill~~--~~~~~l~dfg~~~~~~~~~~~~~~~------~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il  191 (284)
T cd07860         120 RVLHRDLKPQNLLINT--EGAIKLADFGLARAFGVPVRTYTHE------VVTLWYRAPEILLGCKYYSTAVDIWSLGCIF  191 (284)
T ss_pred             CeecCCCCHHHEEECC--CCCEEEeeccchhhcccCccccccc------cccccccCCeEEecCCCCCcHHHHHHHHHHH
Confidence            9999999999999986  8899999999987654332111000      11233444554322 2234557888887766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       192 ~~l~  195 (284)
T cd07860         192 AEMV  195 (284)
T ss_pred             HHHH
Confidence            5554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.20  E-value=9e-11  Score=124.43  Aligned_cols=190  Identities=16%  Similarity=0.127  Sum_probs=111.8

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      ...||.|++|+||+|..  +|+.||||+........                           .       +      ..
T Consensus        17 ~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~---------------------------~-------~------~~   56 (310)
T cd07865          17 LAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKE---------------------------G-------F------PI   56 (310)
T ss_pred             EEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcC---------------------------C-------c------hh
Confidence            36899999999999998  69999999763221100                           0       0      01


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeee-------ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFW-------EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESY  446 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~-------e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~  446 (765)
                      .+.+|.+.+.++.    +..-+.+..++.       ...+..++||||+.+ .+.+........++...+...+.  -..
T Consensus        57 ~~~~e~~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~a  131 (310)
T cd07865          57 TALREIKILQLLK----HENVVNLIEICRTKATPYNRYKGSFYLVFEFCEH-DLAGLLSNKNVKFTLSEIKKVMKMLLNG  131 (310)
T ss_pred             HHHHHHHHHHhCC----CCCccceEEEEecccccccCCCceEEEEEcCCCc-CHHHHHHhcccCCCHHHHHHHHHHHHHH
Confidence            1223444343332    222222222221       123445999999987 45544322222344444443332  234


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCCH
Q 004254          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDT  525 (765)
Q Consensus       447 L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~-~~~~~D~  525 (765)
                      +..+|..|++|+|++|.||+++.  ++.++|+|||++..+....... ... .........++++++...+. ..+..|+
T Consensus       132 l~~lH~~~i~H~dl~p~nil~~~--~~~~kl~dfg~~~~~~~~~~~~-~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~Di  207 (310)
T cd07865         132 LYYIHRNKILHRDMKAANILITK--DGILKLADFGLARAFSLSKNSK-PNR-YTNRVVTLWYRPPELLLGERDYGPPIDM  207 (310)
T ss_pred             HHHHHHCCeeccCCCHHHEEECC--CCcEEECcCCCcccccCCcccC-CCC-ccCcccCccccCcHHhcCCcccCchhhh
Confidence            78899999999999999999986  7899999999998765432211 000 00001233456666654322 4566899


Q ss_pred             HHHHHHHHHHH
Q 004254          526 TAVRRTAQFFL  536 (765)
Q Consensus       526 ~~l~~~~~~~l  536 (765)
                      +++...+.+++
T Consensus       208 ~slG~~l~el~  218 (310)
T cd07865         208 WGAGCIMAEMW  218 (310)
T ss_pred             HHHHHHHHHHH
Confidence            99887666554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.20  E-value=1.2e-10  Score=121.37  Aligned_cols=193  Identities=13%  Similarity=0.099  Sum_probs=116.4

Q ss_pred             ccccccceeEEEEEEe-C--CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-K--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~--G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      +.||.|.+|.||+|.+ .  ++.||||..+........                     . .....    ..      .-
T Consensus         6 ~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~---------------------~-~~~~~----~~------~~   53 (269)
T cd08528           6 EHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGK---------------------D-KRERD----KS------IG   53 (269)
T ss_pred             hhhcCCCCceEEEEEEcCCCCceeeeeEeecccccccc---------------------c-cccch----HH------HH
Confidence            5799999999999999 3  688999987543221100                     0 00000    00      01


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh---hhcCCCHHHHHHHHHH--HHHHHH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYAVE--SYLEQI  450 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l---~~~g~d~~~ia~~li~--~~L~qi  450 (765)
                      ++..|..-+   .+.. +++++.-+.-+.......+++|||++|.+|.++...   .....+...+...+.+  ..+..+
T Consensus        54 ~~~~e~~~l---~~~~-~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l  129 (269)
T cd08528          54 DIVSEVTII---KEQL-RHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYL  129 (269)
T ss_pred             HHHHHHHHH---hhcC-CCCCeeeEEeeEccCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHh
Confidence            122232211   1112 223333222223335677999999999999886421   1122344433333322  235677


Q ss_pred             Hh-CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          451 LS-HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       451 ~~-~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      |. .|++|+|++|.||+++.  ++.++++|||++.........       ....+...++.++....+..++..|++++.
T Consensus       130 h~~~~i~H~dl~~~nil~~~--~~~~~l~dfg~~~~~~~~~~~-------~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG  200 (269)
T cd08528         130 HKEKRIVHRDLTPNNIMLGE--DDKVTITDFGLAKQKQPESKL-------TSVVGTILYSCPEIVKNEPYGEKADVWAFG  200 (269)
T ss_pred             ccCCceeecCCCHHHEEECC--CCcEEEecccceeeccccccc-------ccccCcccCcChhhhcCCCCchHHHHHHHH
Confidence            74 78999999999999986  889999999999887654311       112344456667777666677778999887


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       201 ~ll~~l~  207 (269)
T cd08528         201 CILYQMC  207 (269)
T ss_pred             HHHHHHH
Confidence            6665554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.20  E-value=1.5e-10  Score=119.23  Aligned_cols=187  Identities=14%  Similarity=0.127  Sum_probs=115.9

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+++|+|++|.||+|..  +|..||+|.....-...                                  .      .+-
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~------~~~   44 (257)
T cd08225           5 IKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPV----------------------------------K------EKE   44 (257)
T ss_pred             EEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccc----------------------------------h------hhH
Confidence            36899999999999999  58999999762210000                                  0      011


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHh
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILS  452 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~l--i~~~L~qi~~  452 (765)
                      .+.+|...+..+.    +..-+.+... .......+++|||++|.+|.+...... ...+...+....  +...+..+|.
T Consensus        45 ~~~~E~~~l~~~~----h~~i~~~~~~-~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~  119 (257)
T cd08225          45 ASKKEVILLAKMK----HPNIVTFFAS-FQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHD  119 (257)
T ss_pred             HHHHHHHHHHhCC----CCChhhhhhe-eccCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            2233444333332    1111122221 223456799999999999988654322 123333333222  2234678899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      .|++|+|++|.||++++ ++..++++|||.+..+.......      ....+...+++++....+..+...|++++...+
T Consensus       120 ~~i~H~dl~~~nil~~~-~~~~~~l~d~~~~~~~~~~~~~~------~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il  192 (257)
T cd08225         120 RKILHRDIKSQNIFLSK-NGMVAKLGDFGIARQLNDSMELA------YTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVL  192 (257)
T ss_pred             CCcccccCCHHHEEEcC-CCCeEEecccccchhccCCcccc------cccCCCccccCHHHHcCCCCCchhhHHHHHHHH
Confidence            99999999999999985 23457999999988775432211      112345667778877666677788999987665


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       193 ~~l~  196 (257)
T cd08225         193 YELC  196 (257)
T ss_pred             HHHH
Confidence            5443

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.19  E-value=1.4e-10  Score=141.21  Aligned_cols=193  Identities=13%  Similarity=0.040  Sum_probs=118.8

Q ss_pred             cccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      ..|.. ..||.|+||.||+|..  +++.||+|+.......                                  ..... 
T Consensus        13 ~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~----------------------------------e~~~~-   57 (1021)
T PTZ00266         13 NEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLK----------------------------------EREKS-   57 (1021)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccC----------------------------------HHHHH-
Confidence            34433 6899999999999999  5889999987432100                                  00111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhh---hcCCCHHHHHHHHH--H
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYAV--E  444 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~---~~g~d~~~ia~~li--~  444 (765)
                           .|..|+..+..+.    +..-|.+...+... ....+|||||++|++|.++....   ...++...+...+.  .
T Consensus        58 -----~~~~EI~IL~~L~----HPNIVrl~d~f~de~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL  128 (1021)
T PTZ00266         58 -----QLVIEVNVMRELK----HKNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLL  128 (1021)
T ss_pred             -----HHHHHHHHHHHcC----CCCcCeEEEEEEecCCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHH
Confidence                 2334444444432    22222222222221 23468999999999998865321   12244444433332  2


Q ss_pred             HHHHHHHhC-------CccccCCCCCcEEEeec---------------CCCcEEEEeecceeccChhhHHHHHHHHHHHh
Q 004254          445 SYLEQILSH-------GFFHADPHPGNIAVDDV---------------NGGRLIFYDFGMMGSISPNIREGLLEAFYGIY  502 (765)
Q Consensus       445 ~~L~qi~~~-------GffHaDpHPGNILV~~~---------------~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~  502 (765)
                      ..|..+|..       +|+|+|+||.|||+...               ..+.++|+|||++..+......       ...
T Consensus       129 ~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~-------~s~  201 (1021)
T PTZ00266        129 HALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIESMA-------HSC  201 (1021)
T ss_pred             HHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCccccccccccc-------ccc
Confidence            336677764       59999999999999631               1234899999999876543211       112


Q ss_pred             hcCHHHHHHHHHHc--CCCCCCCCHHHHHHHHHHHHH
Q 004254          503 EKDADKVLQAMVQM--GVLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       503 ~~D~~~i~~~l~~l--G~~~~~~D~~~l~~~~~~~l~  537 (765)
                      .+++.+++++++.-  ....+..|+++|...+.+++.
T Consensus       202 vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLT  238 (1021)
T PTZ00266        202 VGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCS  238 (1021)
T ss_pred             CCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHH
Confidence            46778888888743  345677899999887776664

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.19  E-value=2.2e-10  Score=120.78  Aligned_cols=181  Identities=17%  Similarity=0.182  Sum_probs=109.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+++.  +|+.||||..+.....                                         ..+.+
T Consensus        10 ~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~-----------------------------------------~~~~~   48 (288)
T cd06616          10 GEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDE-----------------------------------------KEQKR   48 (288)
T ss_pred             HHhCCCCceEEEEEEECCCCCEEEEEEehhccCh-----------------------------------------HHHHH
Confidence            5799999999999998  5899999976432111                                         01123


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhh----hhcCCCHHHHHHHHHH--HHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSL----DELGVDRKRLGRYAVE--SYLE  448 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l----~~~g~d~~~ia~~li~--~~L~  448 (765)
                      +.+|...+.++.    ++++  +++++.  ......+++|||+++ ++.++...    ....++...+......  ..++
T Consensus        49 ~~~e~~~l~~~~----~~~~--iv~~~~~~~~~~~~~~~~e~~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~  121 (288)
T cd06616          49 LLMDLDVVMRSS----DCPY--IVKFYGALFREGDCWICMELMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALN  121 (288)
T ss_pred             HHHHHHHHHHhc----CCCC--EeeeeeEEecCCcEEEEEecccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence            444544444432    1222  233222  234567999999875 44443211    1122343433333222  2367


Q ss_pred             HHHh-CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC---CCCCCCC
Q 004254          449 QILS-HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG---VLVPTGD  524 (765)
Q Consensus       449 qi~~-~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG---~~~~~~D  524 (765)
                      .+|. .|++|+|+||.||+++.  ++.++++|||++..+......       ....+...+++++....+   ..++..|
T Consensus       122 ~lh~~~~i~H~dlkp~Nil~~~--~~~~kl~dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~~~~D  192 (288)
T cd06616         122 YLKEELKIIHRDVKPSNILLDR--NGNIKLCDFGISGQLVDSIAK-------TRDAGCRPYMAPERIDPSARDGYDVRSD  192 (288)
T ss_pred             HHhhcCCeeccCCCHHHEEEcc--CCcEEEeecchhHHhccCCcc-------ccccCccCccCHHHhccccccCCcchhh
Confidence            7776 59999999999999986  789999999998765432110       001234456677776554   4567789


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++...+.+++
T Consensus       193 i~slG~il~el~  204 (288)
T cd06616         193 VWSLGITLYEVA  204 (288)
T ss_pred             hhHHHHHHHHHH
Confidence            999886655543

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.19  E-value=6e-11  Score=125.81  Aligned_cols=191  Identities=13%  Similarity=0.072  Sum_probs=110.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.........                          .              ..+
T Consensus        14 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~--------------------------~--------------~~~   53 (311)
T cd07866          14 GKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDG--------------------------F--------------PIT   53 (311)
T ss_pred             EEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCC--------------------------c--------------chh
Confidence            6799999999999998  589999998744321110                          0              012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec-------cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWE-------YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYL  447 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e-------~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L  447 (765)
                      +.+|...+.++.    +..-+.+...+.+       .....+++|||+++. +.+.........+...+...+.  -..+
T Consensus        54 ~~~e~~~l~~l~----h~~i~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~~-l~~~~~~~~~~~~~~~~~~i~~~l~~al  128 (311)
T cd07866          54 ALREIKILKKLK----HPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMDHD-LSGLLENPSVKLTESQIKCYMLQLLEGI  128 (311)
T ss_pred             HHHHHHHHHhcC----CCCccchhhheecccccccccCceEEEEEecCCcC-HHHHHhccccCCCHHHHHHHHHHHHHHH
Confidence            233444333332    1111222222211       122358999999874 3332221122344444333332  2347


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHH-----HHHHHhhcCHHHHHHHHHHcC-CCCC
Q 004254          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE-----AFYGIYEKDADKVLQAMVQMG-VLVP  521 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~-----l~~ai~~~D~~~i~~~l~~lG-~~~~  521 (765)
                      ..+|..|++|+|++|+||++++  ++.++++|||++.............     ........+..+++++....+ ...+
T Consensus       129 ~~lH~~~i~H~dl~p~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  206 (311)
T cd07866         129 NYLHENHILHRDIKAANILIDN--QGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTT  206 (311)
T ss_pred             HHHHhCCeecCCCCHHHEEECC--CCCEEECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCc
Confidence            7889999999999999999986  8899999999998765432110000     000001123446667765432 3456


Q ss_pred             CCCHHHHHHHHHHHH
Q 004254          522 TGDTTAVRRTAQFFL  536 (765)
Q Consensus       522 ~~D~~~l~~~~~~~l  536 (765)
                      ..|++++...+.+++
T Consensus       207 ~~Dv~slG~il~el~  221 (311)
T cd07866         207 AVDIWGIGCVFAEMF  221 (311)
T ss_pred             hhHhHHHHHHHHHHH
Confidence            789999887666554

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.19  E-value=1.4e-10  Score=121.58  Aligned_cols=183  Identities=16%  Similarity=0.167  Sum_probs=108.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.|+||.........                                         .+..
T Consensus         5 ~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~-----------------------------------------~~~~   43 (283)
T cd07830           5 KQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSW-----------------------------------------EECM   43 (283)
T ss_pred             eeeccCCceEEEEEEECCCCcEEEEEEehhhccch-----------------------------------------hHHH
Confidence            4699999999999999  58999999763321100                                         0001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH--HHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li~--~~L~qi~~~  453 (765)
                      ..+|...+.++    .+++++.-+.-+.......++||||+ ++.+.+...... ..++...+...+.+  ..+..+|..
T Consensus        44 ~~~e~~~l~~~----~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~  118 (283)
T cd07830          44 NLREVKSLRKL----NEHPNIVKLKEVFRENDELYFVFEYM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKH  118 (283)
T ss_pred             HHHHHHHHHhc----cCCCCchhHHHHhhcCCcEEEEEecC-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHC
Confidence            11222222222    11122211111112255679999999 556665433221 23444444443322  336788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~-lG~~~~~~D~~~l~~~~  532 (765)
                      |++|+|++|+||++++  ++.++|+|||.+..+.......       -..++..+++++... ....+...|++++...+
T Consensus       119 ~i~H~dl~~~ni~i~~--~~~~~l~d~~~~~~~~~~~~~~-------~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l  189 (283)
T cd07830         119 GFFHRDLKPENLLVSG--PEVVKIADFGLAREIRSRPPYT-------DYVSTRWYRAPEILLRSTSYSSPVDIWALGCIM  189 (283)
T ss_pred             CcccCCCChhhEEEcC--CCCEEEeecccceeccCCCCcC-------CCCCcccccCceeeecCcCcCCccchhhHHHHH
Confidence            9999999999999986  8999999999998775432110       011233345555442 33456678999988766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      ..++
T Consensus       190 ~el~  193 (283)
T cd07830         190 AELY  193 (283)
T ss_pred             HHHH
Confidence            5554

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.18  E-value=2.7e-10  Score=119.24  Aligned_cols=123  Identities=15%  Similarity=0.067  Sum_probs=74.0

Q ss_pred             CCeEEEEeecCCCChhhhhhhhhcC---CCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecc
Q 004254          408 TPQILTMEYVPGIKINRIQSLDELG---VDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGM  482 (765)
Q Consensus       408 t~~vLVMEyieG~~L~d~~~l~~~g---~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGl  482 (765)
                      ...++||||++|++|.++.......   .+...+...+  +-..+..+|..|++|+|+||.||+++.  ++.++++|||+
T Consensus        68 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~--~~~~~l~Dfg~  145 (268)
T cd05086          68 IPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTS--DLTVKVGDYGI  145 (268)
T ss_pred             CccEEEEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEEEcC--CccEEeccccc
Confidence            4569999999999998865322111   1222221211  223467889999999999999999986  78999999998


Q ss_pred             eeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-------CCCCCCCCHHHHHHHHHHHH
Q 004254          483 MGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-------GVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       483 v~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-------G~~~~~~D~~~l~~~~~~~l  536 (765)
                      +............    ........++++++...       ...++..|++++.-.+.+++
T Consensus       146 ~~~~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~  202 (268)
T cd05086         146 GPSRYKEDYIETE----DDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELF  202 (268)
T ss_pred             ccccCcchhhhcc----cCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHH
Confidence            7643221110000    00112234455555431       11245679999887665543

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.18  E-value=2.2e-10  Score=120.21  Aligned_cols=186  Identities=13%  Similarity=0.090  Sum_probs=117.0

Q ss_pred             ccccccceeEEEEEEe-C-----CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-K-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~-----G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +-||.|++|.||+|.. .     +..|++|+........                                         
T Consensus        12 ~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~-----------------------------------------   50 (280)
T cd05043          12 DLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEI-----------------------------------------   50 (280)
T ss_pred             eeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHH-----------------------------------------
Confidence            5699999999999998 4     5889999874332111                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcccc-ceeeeccCCCeEEEEeecCCCChhhhhhhhh-------cCCCHHHHHHHH--
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKV-PTIFWEYTTPQILTMEYVPGIKINRIQSLDE-------LGVDRKRLGRYA--  442 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~v-P~vy~e~st~~vLVMEyieG~~L~d~~~l~~-------~g~d~~~ia~~l--  442 (765)
                      ..-++.+|+..+.++     +++++.- .....+.....++++||+++++|.+......       ..++...+...+  
T Consensus        51 ~~~~~~~e~~~l~~l-----~h~ni~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~  125 (280)
T cd05043          51 QVTLLLQESCLLYGL-----SHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQ  125 (280)
T ss_pred             HHHHHHHHHHHHHhC-----CCCCCCeEEEEEecCCCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHH
Confidence            111234454444433     2233322 2222222356799999999999988653321       123444433333  


Q ss_pred             HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004254          443 VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (765)
Q Consensus       443 i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~  522 (765)
                      +-..+..+|..|++|+|++|.||++++  ++.++++|||+++.+.+.......    ....+...+++++.......+..
T Consensus       126 i~~~l~~LH~~~i~H~di~p~nil~~~--~~~~kl~d~g~~~~~~~~~~~~~~----~~~~~~~~y~apE~~~~~~~~~~  199 (280)
T cd05043         126 IACGMSYLHKRGVIHKDIAARNCVIDE--ELQVKITDNALSRDLFPMDYHCLG----DNENRPVKWMALESLVNKEYSSA  199 (280)
T ss_pred             HHHHHHHHHHCCEeecccCHhhEEEcC--CCcEEECCCCCcccccCCceEEeC----CCCCcchhccCHHHHhcCCCCch
Confidence            223467889999999999999999986  789999999999876443211000    00112344667777766666778


Q ss_pred             CCHHHHHHHHHHHH
Q 004254          523 GDTTAVRRTAQFFL  536 (765)
Q Consensus       523 ~D~~~l~~~~~~~l  536 (765)
                      .|++++...+.+++
T Consensus       200 ~Di~slG~~l~el~  213 (280)
T cd05043         200 SDVWSFGVLLWELM  213 (280)
T ss_pred             hhHHHhHHHHHHHh
Confidence            89999887665543

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.18  E-value=2.3e-10  Score=121.52  Aligned_cols=183  Identities=19%  Similarity=0.222  Sum_probs=107.4

Q ss_pred             ccccccceeEEEEEEeC--CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~--G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|..+  |+.||||+.+......                                   -...+..|+.
T Consensus        21 ~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~-----------------------------------~~~~~~~e~~   65 (296)
T cd06618          21 GEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKE-----------------------------------ENKRILMDLD   65 (296)
T ss_pred             eEeeccCCeEEEEEEECCCCeEEEEEEEeccCChH-----------------------------------HHHHHHHHHH
Confidence            78999999999999993  9999999885321110                                   0000111111


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh-C
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS-H  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~-~  453 (765)
                            .+.+   .. +++++.-..-+.......+++|||+++ .+.++........+...+.....  ...+..+|. .
T Consensus        66 ------~~~~---~~-~~~~i~~~~~~~~~~~~~~~v~e~~~~-~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~  134 (296)
T cd06618          66 ------VVLK---SH-DCPYIVKCYGYFITDSDVFICMELMST-CLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKH  134 (296)
T ss_pred             ------HHHh---cc-CCCchHhhheeeecCCeEEEEeeccCc-CHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence                  1111   11 122221111111224567999999976 45554332222334333332222  233667786 6


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC----CCCCCCHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV----LVPTGDTTAVR  529 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~----~~~~~D~~~l~  529 (765)
                      |++|+|++|.||+++.  ++.++|+|||++..+.......       ...+...+++++......    .+...|++++.
T Consensus       135 ~i~H~dl~p~nill~~--~~~~kL~dfg~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG  205 (296)
T cd06618         135 GVIHRDVKPSNILLDA--SGNVKLCDFGISGRLVDSKAKT-------RSAGCAAYMAPERIDPPDPNPKYDIRADVWSLG  205 (296)
T ss_pred             CEecCCCcHHHEEEcC--CCCEEECccccchhccCCCccc-------CCCCCccccCHhhcCCCCCccccccchhHHHHH
Confidence            9999999999999985  8899999999988765432211       012344566777665332    45678999988


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       206 ~il~el~  212 (296)
T cd06618         206 ISLVELA  212 (296)
T ss_pred             HHHHHHH
Confidence            7666554

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.18  E-value=1.8e-10  Score=120.44  Aligned_cols=183  Identities=12%  Similarity=0.091  Sum_probs=113.3

Q ss_pred             ccccccceeEEEEEEeC-------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      .-+|.|++|.||+|+..       .+.|++|+....-.+                                   +..   
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~-----------------------------------~~~---   52 (275)
T cd05046          11 TTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDE-----------------------------------NLQ---   52 (275)
T ss_pred             eeecccceeEEEEEEeccCCcCCCcceEEEEccCCccch-----------------------------------HHH---
Confidence            56999999999999972       367999965221100                                   000   


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhc--------CCCHHHHHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDEL--------GVDRKRLGRY  441 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~--------g~d~~~ia~~  441 (765)
                         -+|.+|++.+.++.    + ++  +++++.  ......++||||++|++|.++......        .+....+...
T Consensus        53 ---~~~~~E~~~l~~l~----h-~~--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~  122 (275)
T cd05046          53 ---SEFRRELDMFRKLS----H-KN--VVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVAL  122 (275)
T ss_pred             ---HHHHHHHHHHHhcC----C-cc--eeeeEEEECCCCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHH
Confidence               12445555555543    2 22  233332  223457999999999999987543221        2333333332


Q ss_pred             H--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004254          442 A--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  519 (765)
Q Consensus       442 l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~  519 (765)
                      +  +...+..+|..|++|+|++|.||+++.  ++.+++.|||++.............     ......++.++....+..
T Consensus       123 ~~~l~~~l~~LH~~~i~H~dlkp~Nili~~--~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~y~~PE~~~~~~~  195 (275)
T cd05046         123 CTQIALGMDHLSNARFVHRDLAARNCLVSS--QREVKVSLLSLSKDVYNSEYYKLRN-----ALIPLRWLAPEAVQEDDF  195 (275)
T ss_pred             HHHHHHHHHHhhhcCcccCcCccceEEEeC--CCcEEEcccccccccCcccccccCC-----ceeEEeecChhhhccCCC
Confidence            2  233478899999999999999999986  7899999999987543221111000     011223566666666666


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 004254          520 VPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       520 ~~~~D~~~l~~~~~~~l  536 (765)
                      .+..|++++...+.+++
T Consensus       196 ~~~~Di~slG~~l~~l~  212 (275)
T cd05046         196 STKSDVWSFGVLMWEVF  212 (275)
T ss_pred             CchhhHHHHHHHHHHHH
Confidence            77789999887665543

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.17  E-value=3e-10  Score=118.82  Aligned_cols=187  Identities=19%  Similarity=0.157  Sum_probs=113.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                  ....      +
T Consensus         5 ~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~----------------------------------~~~~------~   44 (287)
T cd07838           5 AEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEE----------------------------------GIPL------S   44 (287)
T ss_pred             EEecccCceEEEEEEECCCCCEEEEEEeccccccc----------------------------------hhhh------h
Confidence            5789999999999999  48999999885432211                                  0000      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec----cCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWE----YTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQ  449 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e----~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~li~--~~L~q  449 (765)
                      +.+|...+.++.. +.+..-+.+...+..    .+...+++|||++| .+.+..... ....+...+...+.+  ..+..
T Consensus        45 ~~~e~~~l~~l~~-~~h~~i~~~~~~~~~~~~~~~~~~~l~~e~~~~-~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~  122 (287)
T cd07838          45 TLREIALLKQLES-FEHPNIVRLLDVCHGPRTDRELKLTLVFEHVDQ-DLATYLSKCPKPGLPPETIKDLMRQLLRGVDF  122 (287)
T ss_pred             HHHHHHHHHHhhc-cCCCCcceEEEEEeeccCCCCceeEEEehhccc-CHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence            2223322333321 111111222222211    11237899999987 566643321 123444444333322  34688


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..|++|+|++|+||++++  ++.++|+|||.+..++......  .     ......++.++....+......|++++.
T Consensus       123 LH~~~i~h~~l~~~nili~~--~~~~~l~dfg~~~~~~~~~~~~--~-----~~~~~~~~~PE~~~~~~~~~~~Di~s~G  193 (287)
T cd07838         123 LHSHRIVHRDLKPQNILVTS--DGQVKIADFGLARIYSFEMALT--S-----VVVTLWYRAPEVLLQSSYATPVDMWSVG  193 (287)
T ss_pred             HHHCCeeeccCChhhEEEcc--CCCEEEeccCcceeccCCcccc--c-----ccccccccChHHhccCCCCCcchhhhHH
Confidence            89999999999999999986  7899999999998775432100  0     0123445667766666667778999998


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       194 ~~l~~l~  200 (287)
T cd07838         194 CIFAELF  200 (287)
T ss_pred             HHHHHHH
Confidence            7766554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.17  E-value=5.7e-10  Score=117.04  Aligned_cols=149  Identities=17%  Similarity=0.176  Sum_probs=97.2

Q ss_pred             cccc-ccceeEEEEEEeCCeEEEEEEec-CCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIA-AASLGQVHRARLKGEEVVVKVQR-PGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIg-saSiGQVhrA~l~G~~VAVKVqr-P~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ..+| .|+-|.||.....|..+|||.-+ +++-..+..+             .        +.+         .....-.
T Consensus        37 ~~lg~~~g~gtv~~v~~~~~~~vlk~~~r~~~i~kv~~~-------------~--------~~~---------~~~~~~r   86 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQTPGVNWVLRHYRRGGLIGKLSKD-------------R--------YLF---------TGLERTR   86 (239)
T ss_pred             ceeecCCCCccEEEEEeCCceEEEEEeeEcchHHhhhhh-------------c--------ccc---------cchhhhH
Confidence            4676 89999999999989999999763 3332111100             0        000         0011234


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc---C---CCeEEEEeecCC-CChhhhhhhhhcCCCHHHHHHHHHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY---T---TPQILTMEYVPG-IKINRIQSLDELGVDRKRLGRYAVESYLEQ  449 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~---s---t~~vLVMEyieG-~~L~d~~~l~~~g~d~~~ia~~li~~~L~q  449 (765)
                      +.+|.+.+.++.+     +++.+|.++...   .   ...+|+|||++| .+|.++..  ....+.. .... +...+.+
T Consensus        87 ~~rE~~ll~~L~~-----~gi~vP~pl~~~~~~~~~~~~~~lV~e~l~G~~~L~~~l~--~~~l~~~-~~~~-i~~~l~~  157 (239)
T PRK01723         87 AFAEFRLLAQLYE-----AGLPVPRPIAARVVRHGLFYRADILIERIEGARDLVALLQ--EAPLSEE-QWQA-IGQLIAR  157 (239)
T ss_pred             HHHHHHHHHHHHh-----CCCCCceeEeeeeeecCcceeeeEEEEecCCCCCHHHHHh--cCCCCHH-HHHH-HHHHHHH
Confidence            5667777777754     456677665421   1   123699999998 67777542  2222332 2222 4456889


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (765)
                      +|..|++|+|+||+|||+++  +++++|+|||.+..-.+
T Consensus       158 lH~~GI~HrDlkp~NILv~~--~~~v~LIDfg~~~~~~~  194 (239)
T PRK01723        158 FHDAGVYHADLNAHNILLDP--DGKFWLIDFDRGELRTP  194 (239)
T ss_pred             HHHCCCCCCCCCchhEEEcC--CCCEEEEECCCcccCCC
Confidence            99999999999999999985  67999999998887653

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.16  E-value=2.7e-10  Score=118.90  Aligned_cols=183  Identities=18%  Similarity=0.148  Sum_probs=111.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|.+|.||+|+.  +|++|++|+......+.                                  .+...+..|+.
T Consensus         5 ~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~----------------------------------~~~~~~~~e~~   50 (282)
T cd07829           5 EKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEE----------------------------------GIPSTALREIS   50 (282)
T ss_pred             hcccccCcceEEEeeecCCCcEEEEEEeccccccc----------------------------------cccHHHHHHHH
Confidence            4689999999999999  59999999986543110                                  00011112222


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      .      +.++.     ++++ .+...+ ......+++|||+++ +|.++........+...+...+.  -..+..+|..
T Consensus        51 ~------l~~~~-----~~~i~~~~~~~-~~~~~~~~v~e~~~~-~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~  117 (282)
T cd07829          51 L------LKELK-----HPNIVKLLDVI-HTERKLYLVFEYCDM-DLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSH  117 (282)
T ss_pred             H------HHhcC-----CCCHHHHHhhh-hcCCceEEEecCcCc-CHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            1      22111     1111 111122 123567999999986 78776543222344444333322  2346889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~~~  532 (765)
                      |++|+|++|.||++++  ++.++|+|||.+..........-      ....+..+++++....+ ..++..|++++.-.+
T Consensus       118 ~i~H~~l~~~ni~~~~--~~~~~l~d~g~~~~~~~~~~~~~------~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l  189 (282)
T cd07829         118 RILHRDLKPQNILINR--DGVLKLADFGLARAFGIPLRTYT------HEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIF  189 (282)
T ss_pred             CcccCCCChheEEEcC--CCCEEEecCCcccccCCCccccC------ccccCcCcCChHHhcCCcCCCccccHHHHHHHH
Confidence            9999999999999986  78999999999887654332110      01123345566665544 566778999988766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       190 ~~l~  193 (282)
T cd07829         190 AEMI  193 (282)
T ss_pred             HHHH
Confidence            5554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.16  E-value=6.3e-11  Score=133.41  Aligned_cols=186  Identities=19%  Similarity=0.186  Sum_probs=128.6

Q ss_pred             ccccccceeEEEEEEeC-CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|-||.||.+... +..||||..||+..+.-                                         --||
T Consensus       544 ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~-----------------------------------------r~~F  582 (807)
T KOG1094|consen  544 EKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNA-----------------------------------------RNDF  582 (807)
T ss_pred             hhhcCcccceeEEEEecCceEEEEeecCcccchhH-----------------------------------------HHHH
Confidence            67999999999999996 59999999999865431                                         1267


Q ss_pred             HHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcC-CCHHHHHHHH--HHHHHHHHHhC
Q 004254          378 TQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG-VDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g-~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      ..|++-+.+++    + |+| .+--| +-.....+++|||++.+.|+++....... .+........  +.+.+.++-.-
T Consensus       583 ~kEIkiLsqLk----h-PNIveLvGV-C~~DePicmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~  656 (807)
T KOG1094|consen  583 LKEIKILSRLK----H-PNIVELLGV-CVQDDPLCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESL  656 (807)
T ss_pred             HHHHHHHhccC----C-CCeeEEEee-eecCCchHHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhh
Confidence            88888777763    2 332 22211 11224568999999999999865432221 2333333322  33446777789


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      +|+|+|+-|-|+||+.  ++.++++||||++.+-.......-    +-+---..+|+.+-+-+|-.+...|+++|...+-
T Consensus       657 nfVHrd~a~rNcLv~~--e~~iKiadfgmsR~lysg~yy~vq----gr~vlpiRwmawEsillgkFttaSDvWafgvTlw  730 (807)
T KOG1094|consen  657 NFVHRDLATRNCLVDG--EFTIKIADFGMSRNLYSGDYYRVQ----GRAVLPIRWMAWESILLGKFTTASDVWAFGVTLW  730 (807)
T ss_pred             chhhccccccceeecC--cccEEecCcccccccccCCceeee----cceeeeeeehhHHHHHhccccchhhhhhhHHHHH
Confidence            9999999999999985  889999999999976543321110    0000124567788888999999999999998876


Q ss_pred             HHHH
Q 004254          534 FFLN  537 (765)
Q Consensus       534 ~~l~  537 (765)
                      +++.
T Consensus       731 E~~~  734 (807)
T KOG1094|consen  731 EVFM  734 (807)
T ss_pred             HHHH
Confidence            6554

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.16  E-value=1e-10  Score=134.98  Aligned_cols=146  Identities=11%  Similarity=0.028  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhc----CCCHHH---HHHHHHHHHH
Q 004254          376 DYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL----GVDRKR---LGRYAVESYL  447 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~----g~d~~~---ia~~li~~~L  447 (765)
                      .+.+|+..+.++.     +++| .+-.+ .+.....+++||++.+. +.+.......    ......   ++.. +-..+
T Consensus       209 ~~~~Ei~il~~l~-----HpnIv~l~~~-~~~~~~~~lv~e~~~~~-l~~~l~~~~~~~~~~~~~~~~~~i~~q-l~~aL  280 (501)
T PHA03210        209 QLENEILALGRLN-----HENILKIEEI-LRSEANTYMITQKYDFD-LYSFMYDEAFDWKDRPLLKQTRAIMKQ-LLCAV  280 (501)
T ss_pred             HHHHHHHHHHhCC-----CCCcCcEeEE-EEECCeeEEEEeccccC-HHHHHhhccccccccccHHHHHHHHHH-HHHHH
Confidence            3556666666552     2332 22222 23445679999998764 3332211110    011111   2222 22347


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004254          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~  527 (765)
                      ..+|..|++|+|+||+|||++.  ++.++|+|||++..+.......     ..-..++..++++++...+......|+++
T Consensus       281 ~yLH~~gIiHrDLKP~NILl~~--~~~vkL~DFGla~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwS  353 (501)
T PHA03210        281 EYIHDKKLIHRDIKLENIFLNC--DGKIVLGDFGTAMPFEKEREAF-----DYGWVGTVATNSPEILAGDGYCEITDIWS  353 (501)
T ss_pred             HHHHhCCeecCCCCHHHEEECC--CCCEEEEeCCCceecCcccccc-----cccccCCcCCCCchhhcCCCCCcHHHHHH
Confidence            8899999999999999999986  8899999999998775432110     00123456667777776666677789999


Q ss_pred             HHHHHHHHH
Q 004254          528 VRRTAQFFL  536 (765)
Q Consensus       528 l~~~~~~~l  536 (765)
                      +...+.+++
T Consensus       354 lGvil~ell  362 (501)
T PHA03210        354 CGLILLDML  362 (501)
T ss_pred             HHHHHHHHH
Confidence            988776665

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.16  E-value=2.3e-10  Score=119.27  Aligned_cols=185  Identities=16%  Similarity=0.155  Sum_probs=111.0

Q ss_pred             ccccccceeEEEEEEe-----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||.|++|.||+|.+     +|+.||||+...+......                                        
T Consensus         5 ~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~----------------------------------------   44 (273)
T cd05074           5 RMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSD----------------------------------------   44 (273)
T ss_pred             hcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHH----------------------------------------
Confidence            5799999999999986     2689999988554322100                                        


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccC--------CCeEEEEeecCCCChhhhhhhhhc-----CCCHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT--------TPQILTMEYVPGIKINRIQSLDEL-----GVDRKRLGR  440 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s--------t~~vLVMEyieG~~L~d~~~l~~~-----g~d~~~ia~  440 (765)
                      .-++.+|.+.+.++.     +++  +.+.+....        .-.++++||.+++++.+.......     ..+...+..
T Consensus        45 ~~~~~~E~~~l~~l~-----h~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~  117 (273)
T cd05074          45 IEEFLREAACMKEFD-----HPN--VIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVR  117 (273)
T ss_pred             HHHHHHHHHHHhcCC-----CCC--cceEEEEEccCCCCCcccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHH
Confidence            012334444444331     122  233332111        123789999999998875432211     123332322


Q ss_pred             HH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004254          441 YA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  518 (765)
Q Consensus       441 ~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~  518 (765)
                      .+  +-..+..+|..|++|+|++|.||+++.  ++.++++|||.+..+.........    ........++.++....+.
T Consensus       118 ~~~~i~~~l~~lH~~~i~H~dikp~nili~~--~~~~kl~dfg~~~~~~~~~~~~~~----~~~~~~~~~~~pe~~~~~~  191 (273)
T cd05074         118 FMIDIASGMEYLSSKNFIHRDLAARNCMLNE--NMTVCVADFGLSKKIYSGDYYRQG----CASKLPVKWLALESLADNV  191 (273)
T ss_pred             HHHHHHHHHHHHHhCCEeecccchhhEEEcC--CCCEEECcccccccccCCcceecC----CCccCchhhcCHhHHhcCc
Confidence            22  223467889999999999999999985  789999999998876432210000    0001123445566666666


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 004254          519 LVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       519 ~~~~~D~~~l~~~~~~~l  536 (765)
                      .+...|++++.-.+.+++
T Consensus       192 ~~~~sDi~slG~il~el~  209 (273)
T cd05074         192 YTTHSDVWAFGVTMWEIM  209 (273)
T ss_pred             cchhhhhHHHHHHHHHHh
Confidence            677789999887665543

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.15  E-value=2.7e-10  Score=131.39  Aligned_cols=78  Identities=19%  Similarity=0.214  Sum_probs=55.3

Q ss_pred             CCeEEEEeecCCCChhhhhhhhhcC-----------------------CCHHHHHHHH--HHHHHHHHHhCCccccCCCC
Q 004254          408 TPQILTMEYVPGIKINRIQSLDELG-----------------------VDRKRLGRYA--VESYLEQILSHGFFHADPHP  462 (765)
Q Consensus       408 t~~vLVMEyieG~~L~d~~~l~~~g-----------------------~d~~~ia~~l--i~~~L~qi~~~GffHaDpHP  462 (765)
                      ...+|||||++|++|.++.......                       .+...+...+  +...+..+|..|++|+|+||
T Consensus       258 ~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp  337 (507)
T PLN03224        258 GSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKP  337 (507)
T ss_pred             CceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCch
Confidence            4579999999999998865321100                       0111111111  22346788999999999999


Q ss_pred             CcEEEeecCCCcEEEEeecceeccC
Q 004254          463 GNIAVDDVNGGRLIFYDFGMMGSIS  487 (765)
Q Consensus       463 GNILV~~~~~g~l~LiDFGlv~~L~  487 (765)
                      +||+++.  ++.++++|||++..+.
T Consensus       338 ~NILl~~--~~~~kL~DFGla~~~~  360 (507)
T PLN03224        338 ENLLVTV--DGQVKIIDFGAAVDMC  360 (507)
T ss_pred             HhEEECC--CCcEEEEeCcCccccc
Confidence            9999986  7899999999987654

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.15  E-value=1.4e-10  Score=128.29  Aligned_cols=177  Identities=18%  Similarity=0.140  Sum_probs=114.6

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +-+|+|.||.||+|.++++.||||+..+.-.+....+-+|..                                 ..  .
T Consensus       216 eli~~Grfg~V~KaqL~~~~VAVKifp~~~kqs~~~Ek~Iy~---------------------------------lp--~  260 (534)
T KOG3653|consen  216 ELIGRGRFGCVWKAQLDNRLVAVKIFPEQEKQSFQNEKNIYS---------------------------------LP--G  260 (534)
T ss_pred             HHhhcCccceeehhhccCceeEEEecCHHHHHHHHhHHHHHh---------------------------------cc--C
Confidence            468999999999999999999999985544333322222211                                 11  2


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHH---HHHHHHHHHHHHHHH----
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK---RLGRYAVESYLEQIL----  451 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~---~ia~~li~~~L~qi~----  451 (765)
                      .+..|+.+|-..-+..         .....+.+||+||-+-++|.++..  ..-++-.   +++..+++ -+.++|    
T Consensus       261 m~h~nIl~Fi~~ekr~---------t~~~~eywLVt~fh~kGsL~dyL~--~ntisw~~~cria~Smar-GLa~LHee~p  328 (534)
T KOG3653|consen  261 MKHENILQFIGAEKRG---------TADRMEYWLVTEFHPKGSLCDYLK--ANTISWNSLCRIAESMAR-GLAHLHEELP  328 (534)
T ss_pred             ccchhHHHhhchhccC---------CccccceeEEeeeccCCcHHHHHH--hccccHHHHHHHHHHHHH-HHHHhcccCC
Confidence            2334555553221111         011235689999999999999854  3334433   33333333 245555    


Q ss_pred             -----hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004254          452 -----SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (765)
Q Consensus       452 -----~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~  526 (765)
                           ..+|.|||+|..||||..  |+..+|.|||++.++++..-..=.    +.--++..||++++++-.+-..  |..
T Consensus       329 ~~d~~Kp~IaHRDlkSkNVLvK~--DlTccIaDFGLAl~~~p~~~~~d~----~~qVGT~RYMAPEvLEgainl~--d~~  400 (534)
T KOG3653|consen  329 RGDHHKPPIAHRDLKSKNVLVKN--DLTCCIADFGLALRLEPGKPQGDT----HGQVGTRRYMAPEVLEGAINLQ--DRD  400 (534)
T ss_pred             cCCCCCCccccccccccceEEcc--CCcEEeeccceeEEecCCCCCcch----hhhhhhhhhcCHHHHhhhcccc--cHH
Confidence                 356999999999999985  999999999999999875433211    1123678999999998655333  355


Q ss_pred             HHHH
Q 004254          527 AVRR  530 (765)
Q Consensus       527 ~l~~  530 (765)
                      +|++
T Consensus       401 Afkr  404 (534)
T KOG3653|consen  401 AFKR  404 (534)
T ss_pred             HHHH
Confidence            5554

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.14  E-value=2.2e-10  Score=118.08  Aligned_cols=117  Identities=17%  Similarity=0.163  Sum_probs=80.1

Q ss_pred             CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceec
Q 004254          408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS  485 (765)
Q Consensus       408 t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~  485 (765)
                      ...+++|||++|++|.+.... ....+...+...+.+  ..+..+|..|++|+|+||.||+++.  ++.++++|||....
T Consensus        58 ~~~~lv~e~~~~~~L~~~l~~-~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~--~~~~~l~df~~~~~  134 (237)
T cd05576          58 DSVFLVLQHAEGGKLWSHISK-FLNIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDD--RGHIQLTYFSRWSE  134 (237)
T ss_pred             CeEEEEEecCCCCCHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcC--CCCEEEecccchhc
Confidence            456999999999999886532 223444444433322  3467889999999999999999986  78999999998766


Q ss_pred             cChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          486 ISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       486 L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +......         ...+..+++++....+..++..|++++.-.+.+++
T Consensus       135 ~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~  176 (237)
T cd05576         135 VEDSCDG---------EAVENMYCAPEVGGISEETEACDWWSLGAILFELL  176 (237)
T ss_pred             ccccccc---------CCcCccccCCcccCCCCCCchhhHHHHHHHHHHHH
Confidence            6542211         01123355666555555567789999887665554

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.14  E-value=1.1e-10  Score=126.58  Aligned_cols=185  Identities=15%  Similarity=0.136  Sum_probs=108.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+..+.-...                                   ...      +
T Consensus        11 ~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~~------~   49 (336)
T cd07849          11 SYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQT-----------------------------------FCQ------R   49 (336)
T ss_pred             EEEEecCCeEEEEEEEcCCCCeEEEEEecccccch-----------------------------------hHH------H
Confidence            6799999999999998  69999999875421111                                   000      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec----cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWE----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  450 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e----~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi  450 (765)
                      +..|...+.++.    +..-+.+..++..    .....+++|||+++ .+.+..  ....++...+...+  +-..+..+
T Consensus        50 ~~~E~~~l~~l~----h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~--~~~~l~~~~~~~i~~ql~~aL~~L  122 (336)
T cd07849          50 TLREIKILRRFK----HENIIGILDIIRPPSFESFNDVYIVQELMET-DLYKLI--KTQHLSNDHIQYFLYQILRGLKYI  122 (336)
T ss_pred             HHHHHHHHHhCC----CCCcCchhheeecccccccceEEEEehhccc-CHHHHH--hcCCCCHHHHHHHHHHHHHHHHHH
Confidence            122333233222    1111222222211    12346899999987 444432  22223433333322  22347889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCCHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVR  529 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~-lG~~~~~~D~~~l~  529 (765)
                      |..|++|+|+||.||+++.  ++.++++|||++..........  .. ..-..++..+++++... ....+...|++++.
T Consensus       123 H~~~ivH~dlkp~Nill~~--~~~~kl~dfg~~~~~~~~~~~~--~~-~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG  197 (336)
T cd07849         123 HSANVLHRDLKPSNLLLNT--NCDLKICDFGLARIADPEHDHT--GF-LTEYVATRWYRAPEIMLNSKGYTKAIDIWSVG  197 (336)
T ss_pred             HhCCeeccCCCHHHEEECC--CCCEEECcccceeecccccccc--CC-cCCcCcCCCccChHHhhCCCCCCcHHHHHHHH
Confidence            9999999999999999986  8899999999988765421100  00 00012234456666543 23456677999988


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       198 vil~el~  204 (336)
T cd07849         198 CILAEML  204 (336)
T ss_pred             HHHHHHH
Confidence            7666554

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.14  E-value=5.3e-11  Score=137.67  Aligned_cols=213  Identities=17%  Similarity=0.199  Sum_probs=144.7

Q ss_pred             hhhCCCCCChHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEe--CC---eEEEEEEecCCchhhHHHHHHHH
Q 004254          265 LQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL--KG---EEVVVKVQRPGLKDLFDIDLKNL  339 (765)
Q Consensus       265 Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G---~~VAVKVqrP~i~~~i~~DL~il  339 (765)
                      ...-+.|+.+|+.-+.++ ||-+.++--+-.+ ++.||+|.||.||+|+|  .|   ..||||-++-|..+.        
T Consensus       603 ~k~YiDP~TYEDPnqAvr-eFakEId~s~i~I-e~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gytek--------  672 (996)
T KOG0196|consen  603 TKTYIDPHTYEDPNQAVR-EFAKEIDPSCVKI-EKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEK--------  672 (996)
T ss_pred             ceeecCCccccCccHHHH-HhhhhcChhheEE-EEEEecccccceecccccCCCCcceeEEEeeeccCccHH--------
Confidence            445566777776544443 2333332222122 36799999999999999  34   579999987765443        


Q ss_pred             HHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCC
Q 004254          340 RVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPG  419 (765)
Q Consensus       340 ~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG  419 (765)
                                                       +..||..||.-|-.|     ++|+|.--.-+-.-+..-+++.|||+.
T Consensus       673 ---------------------------------qrrdFL~EAsIMGQF-----dHPNIIrLEGVVTks~PvMIiTEyMEN  714 (996)
T KOG0196|consen  673 ---------------------------------QRRDFLSEASIMGQF-----DHPNIIRLEGVVTKSKPVMIITEYMEN  714 (996)
T ss_pred             ---------------------------------HHhhhhhhhhhcccC-----CCCcEEEEEEEEecCceeEEEhhhhhC
Confidence                                             234889999888766     345443333333345667899999999


Q ss_pred             CChhhhhhhhhcCCCHHHHHH--HHHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHH
Q 004254          420 IKINRIQSLDELGVDRKRLGR--YAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEA  497 (765)
Q Consensus       420 ~~L~d~~~l~~~g~d~~~ia~--~li~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l  497 (765)
                      ++|+.+.......+...++..  +++.+-++++-..|++|||+-.-||||+.  +-..++.|||+.+.+.+..-..+...
T Consensus       715 GsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNs--nLvCKVsDFGLSRvledd~~~~ytt~  792 (996)
T KOG0196|consen  715 GSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNS--NLVCKVSDFGLSRVLEDDPEAAYTTL  792 (996)
T ss_pred             CcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeecc--ceEEEeccccceeecccCCCcccccc
Confidence            999998766555555555554  35677799999999999999999999985  67889999999998866542222111


Q ss_pred             HHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          498 FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       498 ~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                        + -.=-....+++.+.....+...|++++.-
T Consensus       793 --G-GKIPiRWTAPEAIa~RKFTsASDVWSyGI  822 (996)
T KOG0196|consen  793 --G-GKIPIRWTAPEAIAYRKFTSASDVWSYGI  822 (996)
T ss_pred             --C-CccceeecChhHhhhcccCchhhccccce
Confidence              0 00013445677777777777888887653

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.14  E-value=1.7e-10  Score=125.02  Aligned_cols=186  Identities=17%  Similarity=0.118  Sum_probs=110.4

Q ss_pred             ccccccceeEEEEEEe--C--CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--K--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~--G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      +.||+|++|.||+|+.  .  |..||||+.+......                                  ..      .
T Consensus         6 ~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~----------------------------------~~------~   45 (332)
T cd07857           6 KELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKK----------------------------------IL------A   45 (332)
T ss_pred             EEccccCCeEEEEEEeCCCCcCceEEEEEeccccccc----------------------------------hh------H
Confidence            5799999999999998  4  7799999874321110                                  00      1


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeee------ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIFW------EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESY  446 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~------e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~  446 (765)
                      -++.+|...+.++.    ++++  +++.+.      ......+++|||+++ .|.+... ....++...+...+.  -..
T Consensus        46 ~~~~~E~~~l~~l~----~h~~--iv~~~~~~~~~~~~~~~~~~~~e~~~~-~L~~~l~-~~~~~~~~~~~~~~~qi~~a  117 (332)
T cd07857          46 KRALRELKLLRHFR----GHKN--ITCLYDMDIVFPGNFNELYLYEELMEA-DLHQIIR-SGQPLTDAHFQSFIYQILCG  117 (332)
T ss_pred             HHHHHHHHHHHHhc----CCCC--hheeeeeeeeccccCCcEEEEEecccC-CHHHHHh-cCCCCCHHHHHHHHHHHHHH
Confidence            12333444444432    2222  222221      112346899999875 5665432 122344444333332  234


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCH
Q 004254          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDT  525 (765)
Q Consensus       447 L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~  525 (765)
                      +..+|..|++|+|+||+||++++  ++.++|+|||++..+.......-..  ..-..++..+++++....+ ..+...|+
T Consensus       118 L~~LH~~givH~dlkp~Nili~~--~~~~kl~Dfg~a~~~~~~~~~~~~~--~~~~~g~~~y~aPE~~~~~~~~~~~~Di  193 (332)
T cd07857         118 LKYIHSANVLHRDLKPGNLLVNA--DCELKICDFGLARGFSENPGENAGF--MTEYVATRWYRAPEIMLSFQSYTKAIDV  193 (332)
T ss_pred             HHHHHhCCcccCCCCHHHeEEcC--CCCEEeCcCCCceeccccccccccc--ccCcccCccccCcHHHhCCCCCCcHHHH
Confidence            78889999999999999999986  7899999999998776432210000  0011234456667765432 34556789


Q ss_pred             HHHHHHHHHHH
Q 004254          526 TAVRRTAQFFL  536 (765)
Q Consensus       526 ~~l~~~~~~~l  536 (765)
                      +++...+.+++
T Consensus       194 ~slGv~l~~l~  204 (332)
T cd07857         194 WSVGCILAELL  204 (332)
T ss_pred             HHHHHHHHHHH
Confidence            88876655543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.13  E-value=1.7e-10  Score=121.13  Aligned_cols=184  Identities=19%  Similarity=0.199  Sum_probs=109.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|..  +|+.||||+.+.+....                                  ....      +
T Consensus         5 ~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~----------------------------------~~~~------~   44 (283)
T cd07835           5 EKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDE----------------------------------GVPS------T   44 (283)
T ss_pred             eEecCCCCeEEEEEEEcCCCCEEEEEEeecccccc----------------------------------cchh------H
Confidence            5689999999999998  69999999874332110                                  0000      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH--HHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li~--~~L~qi~~~  453 (765)
                      +.+|...+.++.    +..-+.+...+. .....+++|||+++ ++.++..... ..++...+.....+  ..+..+|..
T Consensus        45 ~~~E~~~l~~l~----~~~iv~~~~~~~-~~~~~~iv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~  118 (283)
T cd07835          45 AIREISLLKELN----HPNIVRLLDVVH-SENKLYLVFEFLDL-DLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSH  118 (283)
T ss_pred             HHHHHHHHHhcC----CCCccCHhheec-cCCeEEEEEeccCc-CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            233333333332    212222222222 23567999999965 6776543221 13444444333322  346788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~  532 (765)
                      |++|+|++|+||++++  ++.++++|||++..+....+.....      .....+++++.... ...+...|++++...+
T Consensus       119 ~~~H~dl~p~nil~~~--~~~~~l~df~~~~~~~~~~~~~~~~------~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l  190 (283)
T cd07835         119 RVLHRDLKPQNLLIDR--EGALKLADFGLARAFGVPVRTYTHE------VVTLWYRAPEILLGSRQYSTPVDIWSIGCIF  190 (283)
T ss_pred             CeeCCCCCHHHEEEcC--CCcEEEeecccccccCCCccccCcc------ccccCCCCCceeecCcccCcHHHHHHHHHHH
Confidence            9999999999999986  8899999999987665332211000      11233455554332 2345567888887666


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       191 ~~l~  194 (283)
T cd07835         191 AEMV  194 (283)
T ss_pred             HHHH
Confidence            5554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.13  E-value=3.4e-10  Score=132.69  Aligned_cols=163  Identities=15%  Similarity=0.192  Sum_probs=111.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|.+|+||+++.  +|+-+||||+.|+.....+..++                                       
T Consensus        25 evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~e---------------------------------------   65 (953)
T KOG0587|consen   25 EVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELE---------------------------------------   65 (953)
T ss_pred             EEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHH---------------------------------------
Confidence            4688999999999887  69999999998876544221111                                       


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee-----ccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHHHHH--HH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVESY--LE  448 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~-----e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~ia~~li~~~--L~  448 (765)
                           -|+-++.   .+++++..-.-+.     .-..+.|||||||.|++++|+... .....+...|+..+.+.+  +.
T Consensus        66 -----ynil~~~---~~hpnv~~fyg~~~k~~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~  137 (953)
T KOG0587|consen   66 -----YNMLKKY---SHHPNVATFYGAFIKKDPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLA  137 (953)
T ss_pred             -----HHHHHhc---cCCCCcceEEEEEEEecCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHH
Confidence                 0222222   2333222111111     123567999999999999997643 233345566777666655  56


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  516 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l  516 (765)
                      ++|...++|+|+|-.|||++.  ++.++|.|||....++....+.      ...-+.+.+|+++.+.-
T Consensus       138 HLH~nkviHRDikG~NiLLT~--e~~VKLvDFGvSaQldsT~grR------nT~iGtP~WMAPEViac  197 (953)
T KOG0587|consen  138 HLHNNKVIHRDIKGQNVLLTE--NAEVKLVDFGVSAQLDSTVGRR------NTFIGTPYWMAPEVIAC  197 (953)
T ss_pred             HHhhcceeeecccCceEEEec--cCcEEEeeeeeeeeeecccccc------cCcCCCcccccceeeec
Confidence            677889999999999999996  8999999999999998765332      22346778888877653

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.12  E-value=5.4e-10  Score=120.91  Aligned_cols=186  Identities=15%  Similarity=0.103  Sum_probs=108.8

Q ss_pred             ccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 004254          303 AASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQE  380 (765)
Q Consensus       303 saSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~E  380 (765)
                      .|++++||+|..  +|+.||||+....-...                                  +..+      .+.+|
T Consensus        10 ~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~------~~~~e   49 (328)
T cd08226          10 FCNLTSVYLARHTPTGTLVTVRITDLENCTE----------------------------------EHLK------ALQNE   49 (328)
T ss_pred             ccCceeEEEEEEcCCCcEEEEEEeccccCCH----------------------------------HHHH------HHHHH
Confidence            349999999998  69999999874321100                                  0001      22223


Q ss_pred             HHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHH--HHHHHHHHhCCcc
Q 004254          381 AANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAV--ESYLEQILSHGFF  456 (765)
Q Consensus       381 A~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~li--~~~L~qi~~~Gff  456 (765)
                      +.-+    +.+.+ ++| .+..++ ......+++|||++|+++.++.... ..+.+...+...+.  -..+..+|..|++
T Consensus        50 ~~~~----~~l~h-~niv~~~~~~-~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~iv  123 (328)
T cd08226          50 VVLS----HFFRH-PNIMTSWTVF-TTGSWLWVISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYI  123 (328)
T ss_pred             HHHH----HhCCC-CCcceEeeeE-ecCCceEEEEecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCee
Confidence            3222    22333 333 333333 3345679999999999998865322 22344444333322  2346788999999


Q ss_pred             ccCCCCCcEEEeecCCCcEEEEeecceeccChhh-HHHHHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCCHHHHHHHHH
Q 004254          457 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNI-REGLLEAFYGIYEKDADKVLQAMVQMG--VLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       457 HaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~-r~~l~~l~~ai~~~D~~~i~~~l~~lG--~~~~~~D~~~l~~~~~  533 (765)
                      |+|+||+||++..  ++.+++.|||.+....... .................++.++....+  -.++..|++++...+.
T Consensus       124 HrDlkp~Nill~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~  201 (328)
T cd08226         124 HRNIKASHILISG--DGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITAC  201 (328)
T ss_pred             cCCCCHHHEEEeC--CCcEEEechHHHhhhhccCccccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHH
Confidence            9999999999986  7899999998654332211 000000000001122346677776543  2456789999987766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       202 el~  204 (328)
T cd08226         202 ELA  204 (328)
T ss_pred             HHH
Confidence            654

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.11  E-value=3e-10  Score=123.44  Aligned_cols=181  Identities=16%  Similarity=0.212  Sum_probs=111.1

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .++||.|++|.||+|..  +|+.||||.........                                  ..      .-
T Consensus        15 ~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~------~~   54 (328)
T cd07856          15 LQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTP----------------------------------VL------AK   54 (328)
T ss_pred             EEeecccCCeEEEEEEECCCCCEEEEEEeccccccc----------------------------------ch------hH
Confidence            37899999999999997  69999999764321100                                  00      01


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSH  453 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~  453 (765)
                      ++..|...+..+    .+..-+.+...+.......+++|||+.+ .|.++..  ........+...  .+...+..+|..
T Consensus        55 ~~~~E~~~l~~l----~hpniv~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~--~~~~~~~~~~~~~~ql~~aL~~LH~~  127 (328)
T cd07856          55 RTYRELKLLKHL----RHENIISLSDIFISPLEDIYFVTELLGT-DLHRLLT--SRPLEKQFIQYFLYQILRGLKYVHSA  127 (328)
T ss_pred             HHHHHHHHHHhc----CCCCeeeEeeeEecCCCcEEEEeehhcc-CHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            223344333333    2222344444444334567999999854 6766532  222333222221  223346789999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~  532 (765)
                      |++|+|++|.||++++  ++.++++|||++...+.....         ...+..++.++.... ...++..|++++...+
T Consensus       128 ~iiH~dl~p~Nili~~--~~~~~l~dfg~~~~~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il  196 (328)
T cd07856         128 GVVHRDLKPSNILINE--NCDLKICDFGLARIQDPQMTG---------YVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIF  196 (328)
T ss_pred             CcccCCCCHHHEeECC--CCCEEeCccccccccCCCcCC---------CcccccccCceeeeccCCcCcHHHHHHHHHHH
Confidence            9999999999999985  789999999998866543211         112334555655433 2345667888887766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       197 ~el~  200 (328)
T cd07856         197 AEML  200 (328)
T ss_pred             HHHH
Confidence            6554

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.11  E-value=1.9e-10  Score=123.93  Aligned_cols=185  Identities=18%  Similarity=0.190  Sum_probs=108.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.|+||+..+.....                                  ...+      .
T Consensus         6 ~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~----------------------------------~~~~------~   45 (330)
T cd07834           6 KPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDL----------------------------------IDAK------R   45 (330)
T ss_pred             eeecCCCCeEEEEEEeCCCCcEEEEEeeccccccc----------------------------------hhhh------h
Confidence            5799999999999998  48999999875432110                                  0001      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec----cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWE----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  450 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e----~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi  450 (765)
                      +..|...+..+.    +..-+.+..++..    ..+..+++|||+++ .|.++.... ..++...+...+  +-..+..+
T Consensus        46 ~~~e~~~l~~l~----~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~-~~l~~~~~~~i~~~l~~~l~~L  119 (330)
T cd07834          46 ILREIKLLRHLR----HENIIGLLDILRPPSPEDFNDVYIVTELMET-DLHKVIKSP-QPLTDDHIQYFLYQILRGLKYL  119 (330)
T ss_pred             HHHHHHHHHhcC----CcchhhhhhhhcccCcccccceEEEecchhh-hHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            222333232221    1111111111111    11356899999986 566543211 133333333222  22346788


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHH--HHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIRE--GLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTA  527 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~--~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~  527 (765)
                      |..|++|+|+||+||+++.  ++.++|+|||++.........  ....     ...+..+++++..... ......|+++
T Consensus       120 H~~gi~H~dlkp~nili~~--~~~~~L~dfg~~~~~~~~~~~~~~~~~-----~~~~~~y~aPE~~~~~~~~~~~sDi~s  192 (330)
T cd07834         120 HSANVIHRDLKPSNILVNS--NCDLKICDFGLARGVDPDEDEKGFLTE-----YVVTRWYRAPELLLSSSRYTKAIDIWS  192 (330)
T ss_pred             HhCCeecCCCCHHHEEEcC--CCCEEEcccCceEeecccccccccccc-----cccccCcCCceeeecccCCCcchhHHH
Confidence            9999999999999999986  799999999999987664311  0100     0123334555555444 4566789988


Q ss_pred             HHHHHHHHH
Q 004254          528 VRRTAQFFL  536 (765)
Q Consensus       528 l~~~~~~~l  536 (765)
                      +.-.+.+++
T Consensus       193 lG~il~~l~  201 (330)
T cd07834         193 VGCIFAELL  201 (330)
T ss_pred             HHHHHHHHH
Confidence            876655543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.11  E-value=8.2e-10  Score=118.01  Aligned_cols=128  Identities=14%  Similarity=0.113  Sum_probs=83.1

Q ss_pred             CCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecce
Q 004254          407 TTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM  483 (765)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv  483 (765)
                      ....+++|||++|+++.++.... ..+.+...+...+  +-..+..+|..|++|+|++|+||+++.  ++.+++.|||.+
T Consensus        71 ~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~--~~~~kl~d~~~~  148 (314)
T cd08216          71 DSELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSG--DGKVVLSGLRYS  148 (314)
T ss_pred             CCeEEEEEeccCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEec--CCceEEecCccc
Confidence            45679999999999998865422 2234444443332  223467889999999999999999986  789999999988


Q ss_pred             eccChhhHHH-HHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHH
Q 004254          484 GSISPNIREG-LLEAFYGIYEKDADKVLQAMVQMG--VLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       484 ~~L~~~~r~~-l~~l~~ai~~~D~~~i~~~l~~lG--~~~~~~D~~~l~~~~~~~l  536 (765)
                      ..+....... ...........+..++++++....  ...+..|++++...+.+++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~  204 (314)
T cd08216         149 VSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELA  204 (314)
T ss_pred             eeeccccccccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHH
Confidence            7664322110 000001112234456677776542  2456789999887665554

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.11  E-value=4.8e-10  Score=116.20  Aligned_cols=121  Identities=10%  Similarity=0.050  Sum_probs=79.9

Q ss_pred             CCCeEEEEeecCCCChhhhhhh---hhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeec
Q 004254          407 TTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG  481 (765)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l---~~~g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFG  481 (765)
                      ....+++|||++|.+|.++...   ....++...+...+  +...+..+|..|++|+|++|.||+++   ++.++++|||
T Consensus        74 ~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~---~~~~~l~d~g  150 (260)
T cd08222          74 RDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLK---NNLLKIGDFG  150 (260)
T ss_pred             CCceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEee---cCCEeecccC
Confidence            4557899999999999876432   11223433333222  22346788999999999999999997   4679999999


Q ss_pred             ceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          482 MMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       482 lv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      .+..+......      .....+...++.++...........|++++...+..++
T Consensus       151 ~~~~~~~~~~~------~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~  199 (260)
T cd08222         151 VSRLLMGSCDL------ATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMC  199 (260)
T ss_pred             ceeecCCCccc------ccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHH
Confidence            88766432210      11123445566777665555566789998876655443

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=99.10  E-value=1.7e-09  Score=113.94  Aligned_cols=180  Identities=22%  Similarity=0.277  Sum_probs=124.5

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      ++||-|--+-||.|.. +|.++|||.-|-|-. .+..    .+.--..+..      .....|..+-.   ..      -
T Consensus        97 ~~IGvGKEsdVY~~~~~~g~~~~vKfHR~Grt-sFrk----vk~~R~y~~~------~~h~sWl~~sR---l~------A  156 (304)
T COG0478          97 TKIGVGKESDVYVAIDPKGRKVAVKFHRLGRT-SFRK----VKRNRDYLAD------KEHGSWLYVSR---LA------A  156 (304)
T ss_pred             cccccCccceEEEEECCCCCEEEEEEeecCch-hhhh----hcchhhhhcc------ccCcchhhhHH---HH------H
Confidence            6899999999999999 799999999988833 2111    1111111110      11223432211   11      2


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFH  457 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~GffH  457 (765)
                      .+|-..+.++..     .++.||+++.  -+++++||||++|.+|..+.-   ...++..+...+++.+-... +.|++|
T Consensus       157 ~rEf~~L~~L~~-----~G~~VP~P~~--~nRHaVvMe~ieG~eL~~~r~---~~en~~~il~~il~~~~~~~-~~GiVH  225 (304)
T COG0478         157 EREFEALQRLYP-----EGVKVPKPIA--WNRHAVVMEYIEGVELYRLRL---DVENPDEILDKILEEVRKAY-RRGIVH  225 (304)
T ss_pred             HHHHHHHHHhhh-----cCCCCCCccc--cccceeeeehcccceeecccC---cccCHHHHHHHHHHHHHHHH-HcCccc
Confidence            234444555532     4588999994  578899999999999887531   23456677777766654444 899999


Q ss_pred             cCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004254          458 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  518 (765)
Q Consensus       458 aDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~  518 (765)
                      ||+.+-||+|++  +|.+++|||-.+...+.+....+       +.+|...++..+..-..
T Consensus       226 GDlSefNIlV~~--dg~~~vIDwPQ~v~~~hp~a~e~-------l~RDv~nii~yFrrky~  277 (304)
T COG0478         226 GDLSEFNILVTE--DGDIVVIDWPQAVPISHPDAEEL-------LERDVENIIKYFRRKYG  277 (304)
T ss_pred             cCCchheEEEec--CCCEEEEeCcccccCCCCCHHHH-------HHhHHHHHHHHHHHhcc
Confidence            999999999996  89999999999999887765544       45788888888877543

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.10  E-value=3.7e-11  Score=145.08  Aligned_cols=181  Identities=18%  Similarity=0.130  Sum_probs=114.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEec--CCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQR--PGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqr--P~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      .-||.|-||+||-|..  +|+-.|||-.+  |+..+                  ..          ..+        .  
T Consensus      1241 ~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k------------------~~----------~~i--------~-- 1282 (1509)
T KOG4645|consen 1241 NFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHK------------------TF----------KLI--------A-- 1282 (1509)
T ss_pred             cccCCcceeeeEEeecCCccchhhhhhhhcCccccc------------------cC----------cch--------H--
Confidence            4799999999999998  69999998431  11110                  00          011        1  


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHH---HHHHHHHHHHHHHHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK---RLGRYAVESYLEQIL  451 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~---~ia~~li~~~L~qi~  451 (765)
                          .|.+.++.+     .++++.-+..+.-.-.+-+|-||||+|++|.++.++.  ++..+   ++....+...+..+|
T Consensus      1283 ----eEm~vlE~l-----nHpNlV~YyGVEvHRekv~IFMEyC~~GsLa~ll~~g--ri~dE~vt~vyt~qll~gla~LH 1351 (1509)
T KOG4645|consen 1283 ----EEMKVLEGL-----NHPNLVRYYGVEVHREKVYIFMEYCEGGSLASLLEHG--RIEDEMVTRVYTKQLLEGLAYLH 1351 (1509)
T ss_pred             ----HHHHHHHhc-----cCccccccCceeecHHHHHHHHHHhccCcHHHHHHhc--chhhhhHHHHHHHHHHHHHHHHH
Confidence                122333333     2344444444444445668999999999999976533  22222   222222333467789


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC---CCCCCCHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV---LVPTGDTTAV  528 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~---~~~~~D~~~l  528 (765)
                      ++|++|+||||.||+++.  +|-|++.|||.+..+...... +-.-+. -..+++.+|+++.+--.-   .....|++++
T Consensus      1352 ~~gIVHRDIK~aNI~Ld~--~g~iK~~DFGsa~ki~~~~~~-~~~el~-~~~GT~~YMAPEvit~t~~kG~~~A~DiWsl 1427 (1509)
T KOG4645|consen 1352 EHGIVHRDIKPANILLDF--NGLIKYGDFGSAVKIKNNAQT-MPGELQ-SMMGTPMYMAPEVITGTKGKGHGGAADIWSL 1427 (1509)
T ss_pred             hcCceecCCCccceeeec--CCcEEeecccceeEecCchhc-CCHHHH-hhcCCchhcCchhhcccccCCCCcchhhhcc
Confidence            999999999999999986  789999999999988765211 111111 235789999999875321   1223477777


Q ss_pred             HHHH
Q 004254          529 RRTA  532 (765)
Q Consensus       529 ~~~~  532 (765)
                      .-.+
T Consensus      1428 GCVV 1431 (1509)
T KOG4645|consen 1428 GCVV 1431 (1509)
T ss_pred             cceE
Confidence            6544

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.10  E-value=4.3e-10  Score=122.26  Aligned_cols=185  Identities=16%  Similarity=0.170  Sum_probs=109.3

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .++||.|++|.||+|+.  +|+.||||..++.......                                        ..
T Consensus        10 ~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~----------------------------------------~~   49 (337)
T cd07858          10 IKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRID----------------------------------------AK   49 (337)
T ss_pred             EEEeccCCCeEEEEEEecCCCCeEEEEEecccccccch----------------------------------------hH
Confidence            36899999999999998  6999999987543211100                                        00


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeee----ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFW----EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQ  449 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~----e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~q  449 (765)
                      .+..|...+..+.    +..-+.+..++.    +.....+++|||++| .|.++... ...++...+...+  +-..+..
T Consensus        50 ~~~~E~~~l~~l~----h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~-~~~l~~~~~~~i~~qi~~aL~~  123 (337)
T cd07858          50 RTLREIKLLRHLD----HENVIAIKDIMPPPHREAFNDVYIVYELMDT-DLHQIIRS-SQTLSDDHCQYFLYQLLRGLKY  123 (337)
T ss_pred             HHHHHHHHHHhcC----CCCccchHHheecccccccCcEEEEEeCCCC-CHHHHHhc-CCCCCHHHHHHHHHHHHHHHHH
Confidence            1122333232221    111111111111    112346999999975 56554321 1223443333332  2234678


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAV  528 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l  528 (765)
                      +|..|++|+|++|.||+++.  ++.++|+|||++........  ...    .......+++++.... +..+...|++++
T Consensus       124 LH~~~i~H~dlkp~Nil~~~--~~~~kL~Dfg~~~~~~~~~~--~~~----~~~~~~~y~aPE~~~~~~~~~~~~Diwsl  195 (337)
T cd07858         124 IHSANVLHRDLKPSNLLLNA--NCDLKICDFGLARTTSEKGD--FMT----EYVVTRWYRAPELLLNCSEYTTAIDVWSV  195 (337)
T ss_pred             HHhCCEecCCCCHHHEEEcC--CCCEEECcCccccccCCCcc--ccc----ccccccCccChHHHhcCCCCCCcccHHHH
Confidence            89999999999999999986  78999999999887654321  100    0112344566666543 346677899998


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      .-.+..++
T Consensus       196 G~il~~l~  203 (337)
T cd07858         196 GCIFAELL  203 (337)
T ss_pred             HHHHHHHH
Confidence            87665544

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.09  E-value=5.4e-10  Score=121.22  Aligned_cols=189  Identities=16%  Similarity=0.112  Sum_probs=110.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|..  +|+.||||.........                             ..           .-.
T Consensus        13 ~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~-----------------------------~~-----------~~~   52 (337)
T cd07852          13 QKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNA-----------------------------TD-----------AQR   52 (337)
T ss_pred             HhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcc-----------------------------hh-----------hhh
Confidence            6799999999999998  58999999763211100                             00           001


Q ss_pred             HHHHHHHHHHHHHhcCCCCc-cccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDY-VKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~-V~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~  452 (765)
                      +..|...+.++.    ++++ +.+..++... ....++||||++| .|.+.....  ..+.......  .+...+..+|.
T Consensus        53 ~~~E~~~l~~l~----~h~ni~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~--~~~~~~~~~i~~qi~~~L~~LH~  125 (337)
T cd07852          53 TFREIMFLQELG----DHPNIVKLLNVIKAENDKDIYLVFEYMET-DLHAVIRAN--ILEDVHKRYIMYQLLKALKYIHS  125 (337)
T ss_pred             hhHHHHHHHHhc----CCCCccceeeeeccCCCceEEEEeccccc-CHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            223444444331    1222 2233322221 2246999999986 666543211  2332222221  22334678899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH-HcCCCCCCCCHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV-QMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~-~lG~~~~~~D~~~l~~~  531 (765)
                      .|++|+|++|.||+++.  ++.++++|||++..+.......-..... -..+...++.++.. ..+......|++++...
T Consensus       126 ~~i~H~dl~p~nill~~--~~~~kl~d~g~~~~~~~~~~~~~~~~~~-~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~  202 (337)
T cd07852         126 GNVIHRDLKPSNILLNS--DCRVKLADFGLARSLSELEENPENPVLT-DYVATRWYRAPEILLGSTRYTKGVDMWSVGCI  202 (337)
T ss_pred             CCeecCCCCHHHEEEcC--CCcEEEeeccchhccccccccccCcchh-cccccccccCceeeeccccccccchHHHHHHH
Confidence            99999999999999986  8999999999988765432110000000 01123445556543 23445667899998877


Q ss_pred             HHHHHH
Q 004254          532 AQFFLN  537 (765)
Q Consensus       532 ~~~~l~  537 (765)
                      +.+++.
T Consensus       203 l~el~t  208 (337)
T cd07852         203 LGEMLL  208 (337)
T ss_pred             HHHHHh
Confidence            666553

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.08  E-value=4.5e-10  Score=122.49  Aligned_cols=121  Identities=14%  Similarity=0.115  Sum_probs=73.6

Q ss_pred             CeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceecc
Q 004254          409 PQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  486 (765)
Q Consensus       409 ~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L  486 (765)
                      ..+++|||+++ .|.+...  ...+....+...  .+-..+..+|..|++|+|+||+||+++. .++.++++|||++..+
T Consensus        90 ~~~lv~e~~~~-~L~~~~~--~~~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~-~~~~~kl~dfg~~~~~  165 (342)
T cd07854          90 SVYIVQEYMET-DLANVLE--QGPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINT-EDLVLKIGDFGLARIV  165 (342)
T ss_pred             eEEEEeecccc-cHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcC-CCceEEECCcccceec
Confidence            35899999986 5655432  222333332222  2333467889999999999999999974 3567999999999876


Q ss_pred             ChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHHHHH
Q 004254          487 SPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       487 ~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~~~~l  536 (765)
                      .......-   ......+...+++++...- .......|++++.-.+.+++
T Consensus       166 ~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~  213 (342)
T cd07854         166 DPHYSHKG---YLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEML  213 (342)
T ss_pred             CCcccccc---ccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHH
Confidence            54321100   0000012334556665432 23455689999887665554

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.07  E-value=1.2e-09  Score=119.01  Aligned_cols=186  Identities=19%  Similarity=0.199  Sum_probs=112.5

Q ss_pred             cccccccceeEEEEEEe-C--CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL-K--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l-~--G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      ...||+|+||+||.+.. .  ...+|+|+........                            .        ..+..|
T Consensus        23 ~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~----------------------------~--------~~l~~E   66 (322)
T KOG1164|consen   23 GKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSK----------------------------P--------SVLKIE   66 (322)
T ss_pred             eeeccccCCceEEEEEecCCCCeeEEEEEEEecccCC----------------------------C--------ccchhH
Confidence            47899999999999998 3  3589999874422111                            0        011112


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeecc-CC--CeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHHH--HHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEY-TT--PQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVES--YLE  448 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~-st--~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li~~--~L~  448 (765)
                            ...+..+..   ....-.+|.+++.. .+  -+++||+.+ |.+|.++..... ..++....+...++.  .++
T Consensus        67 ------~~vl~~l~~---~~~~~~~~~~~~~G~~~~~~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~  136 (322)
T KOG1164|consen   67 ------IQVLKKLEK---KNGPSHFPKLLDHGRSTEDFNFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALE  136 (322)
T ss_pred             ------HHHHHHHhh---hcCCCCCCEEEEeccCCCceeEEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHH
Confidence                  222222221   12235678887755 23  369999987 888988764332 345666666655554  489


Q ss_pred             HHHhCCccccCCCCCcEEEeecC-C--CcEEEEeeccee--ccChhhHHHHH--HHHHHHhhcCHHHHHHHHHHcCCCCC
Q 004254          449 QILSHGFFHADPHPGNIAVDDVN-G--GRLIFYDFGMMG--SISPNIREGLL--EAFYGIYEKDADKVLQAMVQMGVLVP  521 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~-~--g~l~LiDFGlv~--~L~~~~r~~l~--~l~~ai~~~D~~~i~~~l~~lG~~~~  521 (765)
                      .+|+.||+|||+||+|+++.... .  ..+.++|||+++  ++.........  +-..+...++..++....-...-..+
T Consensus       137 ~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r  216 (322)
T KOG1164|consen  137 DLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGR  216 (322)
T ss_pred             HHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCC
Confidence            99999999999999999998521 1  469999999999  43222111000  00002234556666555544444555


Q ss_pred             CCCHHHHH
Q 004254          522 TGDTTAVR  529 (765)
Q Consensus       522 ~~D~~~l~  529 (765)
                      ..|.+++-
T Consensus       217 ~DDles~~  224 (322)
T KOG1164|consen  217 RDDLESLF  224 (322)
T ss_pred             chhhhhHH
Confidence            66766643

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.07  E-value=6e-10  Score=120.83  Aligned_cols=188  Identities=18%  Similarity=0.154  Sum_probs=109.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||+|+........                                  +...      .
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~----------------------------------~~~~------~   50 (334)
T cd07855          11 ENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVP----------------------------------TLAK------R   50 (334)
T ss_pred             eeeecCCCeEEEEEEEcCCCCEEEEEEeccccccc----------------------------------cchH------H
Confidence            6799999999999998  59999999874321110                                  0000      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec---cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWE---YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  451 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e---~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~  451 (765)
                      +..|...+.++.    +..-+.+..++..   .....+++|||+.| .|.+..... ..++...+...+  +-..+..+|
T Consensus        51 ~~~e~~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~i~~qi~~aL~~LH  124 (334)
T cd07855          51 TLRELKILRHFK----HDNIIAIRDILRPPGADFKDVYVVMDLMES-DLHHIIHSD-QPLTEEHIRYFLYQLLRGLKYIH  124 (334)
T ss_pred             HHHHHHHHHhcC----CCCccCHHHhccccCCCCceEEEEEehhhh-hHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            122333333332    1111222222221   12346899999976 566654221 223433333322  234477889


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRR  530 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~  530 (765)
                      ..|++|+|++|.||++++  ++.++|+|||++..+........ .. ..-..+...++.++.... +...+..|++++..
T Consensus       125 ~~~ivH~dlkp~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~~-~~-~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~  200 (334)
T cd07855         125 SANVIHRDLKPSNLLVNE--DCELRIGDFGMARGLSSSPTEHK-YF-MTEYVATRWYRAPELLLSLPEYTTAIDMWSVGC  200 (334)
T ss_pred             HCCeecCCCCHHHEEEcC--CCcEEecccccceeecccCcCCC-cc-cccccccccccChHHhcCCcccccccchHHHHH
Confidence            999999999999999986  89999999999876643221100 00 000112334555665433 44567789999886


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       201 ~l~el~  206 (334)
T cd07855         201 IFAEML  206 (334)
T ss_pred             HHHHHH
Confidence            665554

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.06  E-value=9.1e-10  Score=117.25  Aligned_cols=192  Identities=15%  Similarity=0.118  Sum_probs=108.0

Q ss_pred             ccccccceeEEEEEEe----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      ..||+|++|.||+|..    +|+.||||+..+.....                                 +.+...    
T Consensus         6 ~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~---------------------------------~~~~~~----   48 (316)
T cd07842           6 GCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQY---------------------------------TGISQS----   48 (316)
T ss_pred             EEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccc---------------------------------cCccHH----
Confidence            4699999999999999    37899999986643100                                 000011    


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhhh---cCCCHHHHHHHH--HHHHHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYA--VESYLE  448 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~~---~g~d~~~ia~~l--i~~~L~  448 (765)
                        +.+|+.-+..+    .+..-+.+...+.+- ....++||||+++..+..+.....   ..+....+...+  +-..+.
T Consensus        49 --~~~e~~~l~~l----~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~  122 (316)
T cd07842          49 --ACREIALLREL----KHENVVSLVEVFLEHADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVH  122 (316)
T ss_pred             --HHHHHHHHHhc----CCCCccceEEEEeCCCCceEEEEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHH
Confidence              12233323332    222223333333221 145799999998743332221111   122333332222  334477


Q ss_pred             HHHhCCccccCCCCCcEEEee--cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCH
Q 004254          449 QILSHGFFHADPHPGNIAVDD--VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDT  525 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~--~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~  525 (765)
                      .+|..|++|+|++|.||+++.  ..++.++++|||++..+........ .  ..-......+++++....+ ......|+
T Consensus       123 ~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~-~--~~~~~~~~~y~aPE~~~~~~~~~~~~Dv  199 (316)
T cd07842         123 YLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLA-D--LDPVVVTIWYRAPELLLGARHYTKAIDI  199 (316)
T ss_pred             HHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccccccCCCccccc-c--cCCccccccccCHHHHhCCCCCCcHHHH
Confidence            889999999999999999973  1157899999999887654322100 0  0000112335666655332 34566799


Q ss_pred             HHHHHHHHHHH
Q 004254          526 TAVRRTAQFFL  536 (765)
Q Consensus       526 ~~l~~~~~~~l  536 (765)
                      +++...+.+++
T Consensus       200 ~slG~~l~~l~  210 (316)
T cd07842         200 WAIGCIFAELL  210 (316)
T ss_pred             HHHHHHHHHHH
Confidence            99887665554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.06  E-value=6.3e-10  Score=118.83  Aligned_cols=143  Identities=18%  Similarity=0.312  Sum_probs=102.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.||||..+.|+.  ++++||||.-                          |.    +-+-..+-+|+         
T Consensus        34 kKIGeGsFG~lf~G~Nl~nne~VAIKfE--------------------------Pr----kS~APQLrdEY---------   74 (449)
T KOG1165|consen   34 KKIGEGSFGVLFLGKNLYNNEPVAIKFE--------------------------PR----KSEAPQLRDEY---------   74 (449)
T ss_pred             cccccCcceeeecccccccCceEEEEec--------------------------cc----cCCcchHHHHH---------
Confidence            5799999999999997  8999999954                          11    11122222222         


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHH--HHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESY--LEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~--L~qi~~  452 (765)
                               ++.+.+...  .-||.||.  ...-.++||||.+ |.+|.|+..+....++.+.++.......  ++.+|+
T Consensus        75 ---------r~YKlL~g~--~GIP~vYYFGqeG~~NiLVidLL-GPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~  142 (449)
T KOG1165|consen   75 ---------RTYKLLGGT--EGIPQVYYFGQEGKYNILVIDLL-GPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHE  142 (449)
T ss_pred             ---------HHHHHHcCC--CCCCceeeeccccchhhhhhhhh-CcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHh
Confidence                     234444433  45677774  2234569999998 8999998877777777777766555443  778999


Q ss_pred             CCccccCCCCCcEEEeecC---CCcEEEEeecceecc-ChhhHH
Q 004254          453 HGFFHADPHPGNIAVDDVN---GGRLIFYDFGMMGSI-SPNIRE  492 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~---~g~l~LiDFGlv~~L-~~~~r~  492 (765)
                      +.++.||+||+|+||..+.   .+.|.++||||++.+ ++++..
T Consensus       143 k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~Tkq  186 (449)
T KOG1165|consen  143 KDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQ  186 (449)
T ss_pred             cceeecccCccceeecCCCCCCCceEEEEeccchhhhcCccccc
Confidence            9999999999999998632   235999999999975 444443

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.06  E-value=1.8e-10  Score=131.80  Aligned_cols=186  Identities=17%  Similarity=0.174  Sum_probs=126.3

Q ss_pred             ccccccceeEEEEEEe---CC--eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL---KG--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l---~G--~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +-||+||||.||+|.|   .|  -.||||+.+++....+                                         
T Consensus       116 e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~-----------------------------------------  154 (1039)
T KOG0199|consen  116 ELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAI-----------------------------------------  154 (1039)
T ss_pred             HHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchh-----------------------------------------
Confidence            4689999999999999   35  4799999988754320                                         


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHHH--HHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAVE--SYLEQI  450 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~ia~~li~--~~L~qi  450 (765)
                      -=||++|+..|-++.+    ..-|+.--|+  +.....||||.+++++|-|.... .+..+--..+.....+  ..+.++
T Consensus       155 mddflrEas~M~~L~H----~hliRLyGvV--l~qp~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YL  228 (1039)
T KOG0199|consen  155 MDDFLREASHMLKLQH----PHLIRLYGVV--LDQPAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYL  228 (1039)
T ss_pred             HHHHHHHHHHHHhccC----cceeEEeeee--ccchhhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHH
Confidence            1178999988877643    1223332233  23566899999999999886433 1122222333333322  235556


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      -..+++|||+-.-|+++-.  ...|+++|||+++.|...+-. |  .+..-..--+.+++++-+..+-.+...|++.+..
T Consensus       229 eskrlvHRDLAARNlllas--prtVKI~DFGLmRaLg~ned~-Y--vm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGV  303 (1039)
T KOG0199|consen  229 ESKRLVHRDLAARNLLLAS--PRTVKICDFGLMRALGENEDM-Y--VMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGV  303 (1039)
T ss_pred             hhhhhhhhhhhhhhheecc--cceeeeecccceeccCCCCcc-e--EecCCCcCcccccCHhHhccccccccchhhhhhh
Confidence            6799999999999999975  678999999999999765432 2  1111111235677888888888888899999887


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+=+++
T Consensus       304 TiWEMF  309 (1039)
T KOG0199|consen  304 TIWEMF  309 (1039)
T ss_pred             hHHhhh
Confidence            765554

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.05  E-value=2.3e-10  Score=116.86  Aligned_cols=224  Identities=17%  Similarity=0.216  Sum_probs=134.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ..+|.|.++.|+.|..  +.+.++||+.+|--.+.|.++++||..+..-                               
T Consensus        44 rk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkkkKIkREikIL~nL~gg-------------------------------   92 (338)
T KOG0668|consen   44 RKVGRGKYSEVFEGINITNNEKCVIKILKPVKKKKIKREIKILQNLRGG-------------------------------   92 (338)
T ss_pred             HHHcCccHhhHhcccccCCCceEEEeeechHHHHHHHHHHHHHHhccCC-------------------------------
Confidence            5799999999999996  7899999999999888999999888776421                               


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                           .|+..+....++ |          .|.-..|+.||++......+-.    .+.-..|-..+  +-..|..+|+.|
T Consensus        93 -----~NIi~L~DiV~D-p----------~SktpaLiFE~v~n~Dfk~ly~----tl~d~dIryY~~elLkALdyCHS~G  152 (338)
T KOG0668|consen   93 -----PNIIKLLDIVKD-P----------ESKTPSLIFEYVNNTDFKQLYP----TLTDYDIRYYIYELLKALDYCHSMG  152 (338)
T ss_pred             -----CCeeehhhhhcC-c----------cccCchhHhhhhccccHHHHhh----hhchhhHHHHHHHHHHHHhHHHhcC
Confidence                 011111111111 1          1333468889988865544321    01111222222  223477889999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|.||-|++++. ...++.|||||++....+..-.+..-  .+-.-+-++    .+.+.....-..|++++...+..
T Consensus       153 ImHRDVKPhNvmIdh-~~rkLrlIDWGLAEFYHp~~eYnVRV--ASRyfKGPE----LLVdy~~YDYSLD~WS~GcmlA~  225 (338)
T KOG0668|consen  153 IMHRDVKPHNVMIDH-ELRKLRLIDWGLAEFYHPGKEYNVRV--ASRYFKGPE----LLVDYQMYDYSLDMWSLGCMLAS  225 (338)
T ss_pred             cccccCCcceeeech-hhceeeeeecchHhhcCCCceeeeee--ehhhcCCch----heeechhccccHHHHHHHHHHHH
Confidence            999999999999986 45789999999999888765433210  011112232    23334444445688888765544


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHH--HHHHHHHhhCCCcCChhHHHH
Q 004254          535 FLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIG--EDLLAIAADQPFRFPATFTFV  601 (765)
Q Consensus       535 ~l~~~~~~l~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~l~~l~--~~l~~l~~~~~i~lP~~~~~l  601 (765)
                      ++-.-               ..+ |.. -+...    +-.+++.++  .++..-+.++++.+||.|--+
T Consensus       226 miFrk---------------epF-FhG-~dN~D----QLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i  273 (338)
T KOG0668|consen  226 MIFRK---------------EPF-FHG-HDNYD----QLVKIAKVLGTDELYAYLNKYQIDLDPQFEDI  273 (338)
T ss_pred             HHhcc---------------Ccc-cCC-CCCHH----HHHHHHHHhChHHHHHHHHHHccCCChhHhhH
Confidence            43110               011 111 11111    123444444  467777777777777776543

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.05  E-value=1.5e-10  Score=120.49  Aligned_cols=89  Identities=18%  Similarity=0.220  Sum_probs=65.0

Q ss_pred             HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004254          443 VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (765)
Q Consensus       443 i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~  522 (765)
                      +---++.+|..|+.|+|+||||++|+.  +--++++|||+++.-+++++..+..-+..-..+-+    +.+...--.+..
T Consensus       165 ILRGLKYLHsA~ILHRDIKPGNLLVNS--NCvLKICDFGLARvee~d~~~hMTqEVVTQYYRAP----EiLMGaRhYs~A  238 (449)
T KOG0664|consen  165 ILRGLKYLHTANILHRDIKPGNLLVNS--NCILKICDFGLARTWDQRDRLNMTHEVVTQYYRAP----ELLMGARRYTGA  238 (449)
T ss_pred             HHhhhHHHhhcchhhccCCCccEEecc--CceEEecccccccccchhhhhhhHHHHHHHHhccH----HHhhcchhhcCc
Confidence            334578899999999999999999985  77899999999999988888777655544333322    333333345667


Q ss_pred             CCHHHHHHHHHHHHH
Q 004254          523 GDTTAVRRTAQFFLN  537 (765)
Q Consensus       523 ~D~~~l~~~~~~~l~  537 (765)
                      .|++++.-...+++.
T Consensus       239 vDiWSVGCIFaELLg  253 (449)
T KOG0664|consen  239 VDIWSVGCIFAELLQ  253 (449)
T ss_pred             cceehhhHHHHHHHh
Confidence            799988876655554

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.04  E-value=2.5e-10  Score=124.22  Aligned_cols=189  Identities=20%  Similarity=0.164  Sum_probs=119.6

Q ss_pred             ccCc-ccccccceeEEEEEEeC--CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          295 RFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       295 ~fd~-~PIgsaSiGQVhrA~l~--G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +|+- ..+|.||||.|-.|..+  .+-+||||++.++--+ ..|++.-..--+.+. +.    +.   +.          
T Consensus       350 DFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQ-dDDvectm~EKrvLA-L~----~k---pp----------  410 (683)
T KOG0696|consen  350 DFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQ-DDDVECTMVEKRVLA-LP----GK---PP----------  410 (683)
T ss_pred             ccceEEEeccCccceeeeecccCcchhhhhhhhccceeee-cCcccceehhhhhee-cC----CC---Cc----------
Confidence            3443 67999999999999995  4679999997765321 112211000000000 00    00   00          


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhh-hhhhhhcCCCHHHHHHHHHHHHHHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINR-IQSLDELGVDRKRLGRYAVESYLEQI  450 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d-~~~l~~~g~d~~~ia~~li~~~L~qi  450 (765)
                                 -+..+...|+.             -.+.+.||||+.|+.|.- +++.........-....-+...|-.+
T Consensus       411 -----------FL~qlHScFQT-------------mDRLyFVMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFL  466 (683)
T KOG0696|consen  411 -----------FLVQLHSCFQT-------------MDRLYFVMEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFL  466 (683)
T ss_pred             -----------hHHHHHHHhhh-------------hhheeeEEEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhh
Confidence                       01112222221             245689999999998864 33333333332333333344556678


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceecc--ChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI--SPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L--~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      |..|++.||+|-.|||++.  +|.|++.||||++.-  +..+..        ...+++++++++++...-+...+|-+++
T Consensus       467 h~kgIiYRDLKLDNvmLd~--eGHiKi~DFGmcKEni~~~~TTk--------TFCGTPdYiAPEIi~YqPYgksvDWWa~  536 (683)
T KOG0696|consen  467 HSKGIIYRDLKLDNVMLDS--EGHIKIADFGMCKENIFDGVTTK--------TFCGTPDYIAPEIIAYQPYGKSVDWWAF  536 (683)
T ss_pred             hcCCeeeeeccccceEecc--CCceEeeecccccccccCCccee--------eecCCCcccccceEEecccccchhHHHH
Confidence            8999999999999999986  899999999999852  222221        2357999999999988877788899998


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      ...+.+++
T Consensus       537 GVLLyEml  544 (683)
T KOG0696|consen  537 GVLLYEML  544 (683)
T ss_pred             HHHHHHHH
Confidence            87666554

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.04  E-value=7e-10  Score=117.93  Aligned_cols=190  Identities=17%  Similarity=0.169  Sum_probs=128.0

Q ss_pred             cccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      .+||- +.+|.|.||.|-.++-  +|+-+||||.+..+--.  .                              +|++.+
T Consensus       168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviia--k------------------------------dEVAHT  215 (516)
T KOG0690|consen  168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIA--K------------------------------DEVAHT  215 (516)
T ss_pred             chhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheee--h------------------------------HHhhhh
Confidence            35554 6899999999999988  69999999986543110  0                              122211


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhh-hhhhhhcCCCHHHHHHHHHHHHHHH
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINR-IQSLDELGVDRKRLGRYAVESYLEQ  449 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d-~~~l~~~g~d~~~ia~~li~~~L~q  449 (765)
                             ..|.+.+...++     |-+..-+.--+-..+.+.||||+.|+.|.- +..-+-...++.+....-+-..|..
T Consensus       216 -------lTE~RVL~~~~H-----PFLt~LKYsFQt~drlCFVMeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~Y  283 (516)
T KOG0690|consen  216 -------LTENRVLQNCRH-----PFLTSLKYSFQTQDRLCFVMEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGY  283 (516)
T ss_pred             -------hhHHHHHHhccC-----cHHHHhhhhhccCceEEEEEEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhh
Confidence                   123333332221     111111111122345699999999998864 3222334456666666667778999


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceec-cChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS-ISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~-L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      +|..+++.+|+|-.|++++.  ||.|++.|||+++. ++....       .....+.++++++++++-.-....+|-+.+
T Consensus       284 LHs~~ivYRDlKLENLlLDk--DGHIKitDFGLCKE~I~~g~t-------~kTFCGTPEYLAPEVleDnDYgraVDWWG~  354 (516)
T KOG0690|consen  284 LHSRNIVYRDLKLENLLLDK--DGHIKITDFGLCKEEIKYGDT-------TKTFCGTPEYLAPEVLEDNDYGRAVDWWGV  354 (516)
T ss_pred             hhhCCeeeeechhhhheecc--CCceEeeecccchhcccccce-------eccccCChhhcCchhhccccccceeehhhh
Confidence            99999999999999999986  99999999999984 332221       122457999999999987777777888888


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      ...+++++
T Consensus       355 GVVMYEMm  362 (516)
T KOG0690|consen  355 GVVMYEMM  362 (516)
T ss_pred             hHHHHHHH
Confidence            87776665

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.03  E-value=7e-10  Score=126.28  Aligned_cols=181  Identities=18%  Similarity=0.193  Sum_probs=121.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ..||+|.||.|-.|+.  +|.+||||+....--                             |....     ..+.+|  
T Consensus        62 ~tig~g~f~~V~La~~~~t~~~VaiK~idkt~l-----------------------------n~~~~-----~k~~re--  105 (596)
T KOG0586|consen   62 KTIGKGNFAKVKLARHILTGTEVAIKIIDKTQL-----------------------------NPSKR-----QKLGRE--  105 (596)
T ss_pred             eeeccceeEEEEeeEecCCCceEEEEEehhccc-----------------------------ChHHH-----HHHHHH--
Confidence            5799999999999999  799999997622111                             11110     112222  


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH---HHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV---ESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li---~~~L~qi~~  452 (765)
                          .+-|..+     ++|+| .+-.|+ +.....+|||||+.|+.+.+..  ...+-+.+..++...   -..++++|.
T Consensus       106 ----v~imk~l-----~HPnIvkl~~v~-~t~~~lylV~eya~~ge~~~yl--~~~gr~~e~~ar~~F~q~vsaveYcH~  173 (596)
T KOG0586|consen  106 ----VDIMKSL-----NHPNIVKLFSVI-ETEATLYLVMEYASGGELFDYL--VKHGRMKEKEARAKFRQIVSAVEYCHS  173 (596)
T ss_pred             ----HHHHHhc-----CCcceeeeeeee-eecceeEEEEEeccCchhHHHH--HhcccchhhhhhhhhHHHHHHHHHHhh
Confidence                2222222     22333 333333 2345569999999999998864  334444444444443   345788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCCHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRT  531 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~-lG~~~~~~D~~~l~~~  531 (765)
                      ++|+|+|+|..||+++.  +-.++|.|||+...++...   +.+.    ..+.+.++++++.. .....|..|.+.+...
T Consensus       174 k~ivHrdLk~eNilL~~--~mnikIaDfgfS~~~~~~~---~lqt----~cgsppyAaPEl~~g~~y~gpe~D~Wslgvv  244 (596)
T KOG0586|consen  174 KNIVHRDLKAENILLDE--NMNIKIADFGFSTFFDYGL---MLQT----FCGSPPYAAPELFNGKKYDGPEVDIWSLGVV  244 (596)
T ss_pred             cceeccccchhhccccc--ccceeeeccccceeecccc---cccc----cCCCCCccChHhhcCcccCCcceehhhhhhh
Confidence            99999999999999985  6679999999999987532   2233    45678888888875 3566788899988876


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      ++-++
T Consensus       245 ly~LV  249 (596)
T KOG0586|consen  245 LYALV  249 (596)
T ss_pred             heeee
Confidence            65443

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.03  E-value=4.2e-09  Score=117.35  Aligned_cols=182  Identities=19%  Similarity=0.179  Sum_probs=114.2

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      ++.||+|.|+.|-.|++  +|+.|||||.-.-                             +.|-.     -...+    
T Consensus        23 ekTlG~GHFAVVKLArHVFTGekVAVKviDKT-----------------------------KlD~~-----st~hl----   64 (864)
T KOG4717|consen   23 EKTLGRGHFAVVKLARHVFTGEKVAVKVIDKT-----------------------------KLDTL-----STGHL----   64 (864)
T ss_pred             hhhhcCCceehhhhhhhhcccceeEEEEeccc-----------------------------ccchh-----hhhHH----
Confidence            36799999999999998  8999999998211                             00100     01122    


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH---HHHHHHh
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES---YLEQILS  452 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~---~L~qi~~  452 (765)
                        .+|.+.|...    ++..-|+.-.|+ +-.++.||+.|.=+|+.|.|+.-....|+.. .++...+..   ...++|.
T Consensus        65 --fqEVRCMKLV----QHpNiVRLYEVi-DTQTKlyLiLELGD~GDl~DyImKHe~Gl~E-~La~kYF~QI~~AI~YCHq  136 (864)
T KOG4717|consen   65 --FQEVRCMKLV----QHPNIVRLYEVI-DTQTKLYLILELGDGGDLFDYIMKHEEGLNE-DLAKKYFAQIVHAISYCHQ  136 (864)
T ss_pred             --HHHHHHHHHh----cCcCeeeeeehh-cccceEEEEEEecCCchHHHHHHhhhccccH-HHHHHHHHHHHHHHHHHhh
Confidence              2344444333    232233333333 4467889999999999999976444445432 233222222   1333456


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCCCCCCCCHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGVLVPTGDTTAVRRT  531 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~-lG~~~~~~D~~~l~~~  531 (765)
                      ..++|+|+||+|+.+-. +-|-++|.|||+...+-|..+-.   .+    .+.-.+-+++++- -.+-.|.+|++++...
T Consensus       137 LHVVHRDLKPENVVFFE-KlGlVKLTDFGFSNkf~PG~kL~---Ts----CGSLAYSAPEILLGDsYDAPAVDiWSLGVI  208 (864)
T KOG4717|consen  137 LHVVHRDLKPENVVFFE-KLGLVKLTDFGFSNKFQPGKKLT---TS----CGSLAYSAPEILLGDSYDAPAVDIWSLGVI  208 (864)
T ss_pred             hhhhcccCCcceeEEee-ecCceEeeeccccccCCCcchhh---cc----cchhhccCchhhhcCccCCcchhhhHHHHH
Confidence            77999999999998765 57899999999999888875522   22    2333444444443 2344577899998865


Q ss_pred             HH
Q 004254          532 AQ  533 (765)
Q Consensus       532 ~~  533 (765)
                      ++
T Consensus       209 Ly  210 (864)
T KOG4717|consen  209 LY  210 (864)
T ss_pred             HH
Confidence            54

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.03  E-value=1.4e-09  Score=117.80  Aligned_cols=151  Identities=13%  Similarity=0.139  Sum_probs=91.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+..........                        ....+.    ....+.+
T Consensus        15 ~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~------------------------~~~~~~----~~~~~~~   66 (335)
T PTZ00024         15 AHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTK------------------------DRQLVG----MCGIHFT   66 (335)
T ss_pred             hcccCCCceeEEEEEECCCCCeEEEEEeecccccccccc------------------------chhhhc----ccccchh
Confidence            5699999999999998  599999998754221110000                        000000    0001123


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      +.+|...+..+.    + +++ .+...+ ......+++|||++| .+.+.... ....+...+...+.  -..+..+|..
T Consensus        67 ~~~E~~~l~~l~----h-~~iv~~~~~~-~~~~~~~lv~e~~~~-~l~~~l~~-~~~~~~~~~~~~~~ql~~aL~~LH~~  138 (335)
T PTZ00024         67 TLRELKIMNEIK----H-ENIMGLVDVY-VEGDFINLVMDIMAS-DLKKVVDR-KIRLTESQVKCILLQILNGLNVLHKW  138 (335)
T ss_pred             HHHHHHHHHhCC----C-cceeeeeEEE-ecCCcEEEEEecccc-CHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            344544444442    2 222 222222 234567999999987 56654321 12233333333222  2347788999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccC
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS  487 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~  487 (765)
                      |++|+|++|+||+++.  ++.++++|||++..+.
T Consensus       139 ~i~H~dl~~~nill~~--~~~~kl~dfg~~~~~~  170 (335)
T PTZ00024        139 YFMHRDLSPANIFINS--KGICKIADFGLARRYG  170 (335)
T ss_pred             CeecccccHHHeEECC--CCCEEECCccceeecc
Confidence            9999999999999986  7899999999998765

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.01  E-value=4e-09  Score=116.42  Aligned_cols=186  Identities=19%  Similarity=0.174  Sum_probs=134.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ..||.|+||.||-++.  +|+-+|.|-.          |-+-++       +                      =..|.-
T Consensus       191 RvlGkGGFGEV~acqvraTGKMYAcKkL----------~KKRiK-------k----------------------r~ge~m  231 (591)
T KOG0986|consen  191 RVLGKGGFGEVCACQVRATGKMYACKKL----------DKKRIK-------K----------------------RKGETM  231 (591)
T ss_pred             EEEecccccceeEEEEecchhhHHHHHH----------HHHHHH-------H----------------------hhhhHH
Confidence            5799999999999987  6888888743          111110       0                      012333


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee-ccCCCeEEEEeecCCCChhh-hhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINR-IQSLDELGVDRKRLGRYA--VESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~-e~st~~vLVMEyieG~~L~d-~~~l~~~g~d~~~ia~~l--i~~~L~qi~~  452 (765)
                      -.+|..++++...-      +.|--.|- +-.+..+|||..|+|+.|.- +-.+...|++..+..-..  +-.-|+.+|.
T Consensus       232 aLnEk~iL~kV~s~------FiVslaYAfeTkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~  305 (591)
T KOG0986|consen  232 ALNEKQILEKVSSP------FIVSLAYAFETKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHR  305 (591)
T ss_pred             hhHHHHHHHHhccC------cEEEEeeeecCCCceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHh
Confidence            45666666665432      22222232 33456799999999998864 334445567765554443  4445889999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      .+++.||+||.|||+++  .|.+.|.|.|++..+++.....       ---++..+|++++++-+.++-..|-.++.-.+
T Consensus       306 ~~iVYRDLKPeNILLDd--~GhvRISDLGLAvei~~g~~~~-------~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCll  376 (591)
T KOG0986|consen  306 RRIVYRDLKPENILLDD--HGHVRISDLGLAVEIPEGKPIR-------GRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLL  376 (591)
T ss_pred             cceeeccCChhheeecc--CCCeEeeccceEEecCCCCccc-------cccCcccccCHHHHcCCcccCCccHHHHHhHH
Confidence            99999999999999997  8999999999999998876521       12478999999999999999999999999988


Q ss_pred             HHHHHH
Q 004254          533 QFFLNS  538 (765)
Q Consensus       533 ~~~l~~  538 (765)
                      ++++..
T Consensus       377 Yemi~G  382 (591)
T KOG0986|consen  377 YEMIAG  382 (591)
T ss_pred             HHHHcc
Confidence            888754

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=2.5e-10  Score=137.51  Aligned_cols=129  Identities=19%  Similarity=0.185  Sum_probs=84.3

Q ss_pred             eEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH---HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceecc
Q 004254          410 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE---SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  486 (765)
Q Consensus       410 ~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~---~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L  486 (765)
                      .|+-||||+-..+.++..-....-++.. +-.+++   ..+.+||..|++|||+||.|||+++  ++.|+|.|||++..+
T Consensus       671 LYIQMEyCE~~ll~~iI~~N~~~~~~d~-~wrLFreIlEGLaYIH~~giIHRDLKP~NIFLd~--~~~VKIGDFGLAt~~  747 (1351)
T KOG1035|consen  671 LYIQMEYCEKTLLRDIIRRNHFNSQRDE-AWRLFREILEGLAYIHDQGIIHRDLKPRNIFLDS--RNSVKIGDFGLATDL  747 (1351)
T ss_pred             EEEEHhhhhhhHHHHHHHhcccchhhHH-HHHHHHHHHHHHHHHHhCceeeccCCcceeEEcC--CCCeeecccccchhh
Confidence            4899999999888887543333212322 222222   2367899999999999999999985  889999999999874


Q ss_pred             ChhhHHHHHH-HHHHHh-----------hcCHHHHHHHHHHcC---CCCCCCCHHHHHHHHHHHHHHHHH
Q 004254          487 SPNIREGLLE-AFYGIY-----------EKDADKVLQAMVQMG---VLVPTGDTTAVRRTAQFFLNSFEE  541 (765)
Q Consensus       487 ~~~~r~~l~~-l~~ai~-----------~~D~~~i~~~l~~lG---~~~~~~D~~~l~~~~~~~l~~~~~  541 (765)
                      -......... .+....           -++.-|+++++..--   -+..+.|++++.-.+-+++.+|..
T Consensus       748 ~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~yPF~T  817 (1351)
T KOG1035|consen  748 KENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLYPFGT  817 (1351)
T ss_pred             hhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhccCCc
Confidence            3211111000 000011           134457888887643   367788999999877666666543

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.01  E-value=7.6e-10  Score=126.52  Aligned_cols=178  Identities=19%  Similarity=0.209  Sum_probs=115.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      .-+|.||++.|+++..  +++..+||++--...+.                                             
T Consensus       328 ~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~~~---------------------------------------------  362 (612)
T KOG0603|consen  328 EELGEGSFSAVKYCESSPTDQEPAVKIISKRADDN---------------------------------------------  362 (612)
T ss_pred             cccCCCCccceeeeeccccccchhheecccccccc---------------------------------------------
Confidence            3499999999999999  68999999872210000                                             


Q ss_pred             HHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~-V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li~~~L~qi~~~G  454 (765)
                       ..|..-+.    ...++++ +..-.++ +.....++|||.+.|+.+-+-..... .......++.. +-.+++.+|.+|
T Consensus       363 -~~e~~~~~----~~~~h~niv~~~~v~-~~~~~~~~v~e~l~g~ell~ri~~~~~~~~e~~~w~~~-lv~Av~~LH~~g  435 (612)
T KOG0603|consen  363 -QDEIPISL----LVRDHPNIVKSHDVY-EDGKEIYLVMELLDGGELLRRIRSKPEFCSEASQWAAE-LVSAVDYLHEQG  435 (612)
T ss_pred             -ccccchhh----hhcCCCcceeeccee-cCCceeeeeehhccccHHHHHHHhcchhHHHHHHHHHH-HHHHHHHHHhcC
Confidence             00110011    1112222 2233333 23456799999999987766332111 11011122222 334578899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|||+||+|||+.. ..|.|.|+|||....+.++...       -  .-+..++++++...--+++..|.+++...++.
T Consensus       436 vvhRDLkp~NIL~~~-~~g~lrltyFG~a~~~~~~~~t-------p--~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~  505 (612)
T KOG0603|consen  436 VVHRDLKPGNILLDG-SAGHLRLTYFGFWSELERSCDT-------P--ALTLQYVAPEVLAIQEYTEACDWWSLGVLLYE  505 (612)
T ss_pred             eeecCCChhheeecC-CCCcEEEEEechhhhCchhhcc-------c--chhhcccChhhhccCCCCcchhhHHHHHHHHH
Confidence            999999999999952 4789999999999998775100       0  11456678888887677888999999988887


Q ss_pred             HHHH
Q 004254          535 FLNS  538 (765)
Q Consensus       535 ~l~~  538 (765)
                      |+..
T Consensus       506 ML~G  509 (612)
T KOG0603|consen  506 MLTG  509 (612)
T ss_pred             HHhC
Confidence            7654

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.00  E-value=8.4e-10  Score=133.47  Aligned_cols=139  Identities=22%  Similarity=0.274  Sum_probs=89.3

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +-+|.|++|+||+|+. +|+.||+||++|-..-.+    .|..++...+.   +                          
T Consensus       704 ~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WEf----YI~~q~~~RLk---~--------------------------  750 (974)
T KOG1166|consen  704 KEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWEF----YICLQVMERLK---P--------------------------  750 (974)
T ss_pred             eeeccccceEEEEeecCCCcEEEEEeecCCCceee----eehHHHHHhhc---h--------------------------
Confidence            4699999999999999 899999999998654332    22222211111   0                          


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~Gf  455 (765)
                       ....-+-.+..          -.+   +.+..+||+||.+=++|-|+.. .....+..-++-..+  -.+++++|..||
T Consensus       751 -~~~~~~~~~~~----------a~~---~~~~S~lv~ey~~~Gtlld~~N-~~~~m~e~lv~~~~~qml~ive~lH~~~I  815 (974)
T KOG1166|consen  751 -QMLPSIMHISS----------AHV---FQNASVLVSEYSPYGTLLDLIN-TNKVMDEYLVMFFSCQMLRIVEHLHAMGI  815 (974)
T ss_pred             -hhhcchHHHHH----------HHc---cCCcceeeeeccccccHHHhhc-cCCCCCchhhhHHHHHHHHHHHHHHhcce
Confidence             00000011111          111   3567899999999999988765 222333333332222  234899999999


Q ss_pred             cccCCCCCcEEEeecC-----CCcEEEEeecceec
Q 004254          456 FHADPHPGNIAVDDVN-----GGRLIFYDFGMMGS  485 (765)
Q Consensus       456 fHaDpHPGNILV~~~~-----~g~l~LiDFGlv~~  485 (765)
                      +||||||.|+|++...     .--|+|||||.+--
T Consensus       816 IHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siD  850 (974)
T KOG1166|consen  816 IHGDIKPDNFLLRREICADSDSKGLYLIDFGRSID  850 (974)
T ss_pred             ecccCCcceeEeecccCCCCcccceEEEeccccee
Confidence            9999999999997421     22599999997653

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.99  E-value=7.8e-09  Score=103.38  Aligned_cols=147  Identities=20%  Similarity=0.274  Sum_probs=101.1

Q ss_pred             CcccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          297 DVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       297 d~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +..++-.|.-|.|+++.+.|+..+||-.-|.-...-..|.++-+                             .     .
T Consensus        11 ~l~likQGAEArv~~~~~~Ge~~iIK~Rf~K~YRHP~LD~kLtr-----------------------------~-----R   56 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFSGEAAIIKERFSKRYRHPALDQKLTR-----------------------------K-----R   56 (229)
T ss_pred             cceeeeccceeeEeeeccCCceeEEeecccccccchHHHHHHHH-----------------------------H-----H
Confidence            45789999999999999999999999764443333222222211                             1     2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCC-Chhhhhh-hhhcCCCHH---HHHHHHHHHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGI-KINRIQS-LDELGVDRK---RLGRYAVESYLEQIL  451 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~-~L~d~~~-l~~~g~d~~---~ia~~li~~~L~qi~  451 (765)
                      ..+||+-+.+++.     -++.+|.+|........|.|||++|. ++.+... ......+..   .+++ -+...+.-+|
T Consensus        57 t~~Ear~l~k~~~-----~GI~~P~l~~~D~~~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~-~iG~~igklH  130 (229)
T KOG3087|consen   57 TKQEARLLAKCRA-----LGIPAPRLIFIDTYGGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELAR-RIGELIGKLH  130 (229)
T ss_pred             HHHHHHHHHHHHH-----hCCCCceEEEEecCCCeEEEEeccchhHHHHHHHHHccCcccchhHHHHHH-HHHHHHHHhh
Confidence            3567888877765     36899999987788889999999994 4444322 111222222   2222 2334466689


Q ss_pred             hCCccccCCCCCcEEEeecCCCc--EEEEeeccee
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGR--LIFYDFGMMG  484 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~--l~LiDFGlv~  484 (765)
                      ..+++|+|+...||++.+ ++++  +.+||||+..
T Consensus       131 ~ndiiHGDLTTSNill~~-~~~~~~~~lIdfgls~  164 (229)
T KOG3087|consen  131 DNDIIHGDLTTSNILLRS-DGNQITPILIDFGLSS  164 (229)
T ss_pred             hCCeecccccccceEEec-CCCcCceEEEeecchh
Confidence            999999999999999986 3455  4999999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.99  E-value=2.3e-09  Score=132.66  Aligned_cols=173  Identities=13%  Similarity=0.144  Sum_probs=107.2

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||.|++|.||+|+.  +|..||||..+.... .                           .                
T Consensus       695 ~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~---------------------------~----------------  730 (968)
T PLN00113        695 ENVISRGKKGASYKGKSIKNGMQFVVKEINDVNS-I---------------------------P----------------  730 (968)
T ss_pred             ccEEccCCCeeEEEEEECCCCcEEEEEEccCCcc-c---------------------------c----------------
Confidence            36799999999999998  689999997632110 0                           0                


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCC-HHHHHHHHHHHHHHHHH---
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVD-RKRLGRYAVESYLEQIL---  451 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d-~~~ia~~li~~~L~qi~---  451 (765)
                        ..|.+.+.++     ++++|.-..-+.......++||||++|++|.++..  ..... +..++.. +...+..+|   
T Consensus       731 --~~~~~~l~~l-----~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~--~l~~~~~~~i~~~-ia~~L~yLH~~~  800 (968)
T PLN00113        731 --SSEIADMGKL-----QHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLR--NLSWERRRKIAIG-IAKALRFLHCRC  800 (968)
T ss_pred             --HHHHHHHhhC-----CCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHh--cCCHHHHHHHHHH-HHHHHHHhccCC
Confidence              0011112222     23333222222233456799999999999998753  11111 1222222 233466777   


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..+++|+|+||.||+++.  ++..++ +||..+.......          ..+.+.+++++....+..++..|++++...
T Consensus       801 ~~~iiH~dlkp~Nil~~~--~~~~~~-~~~~~~~~~~~~~----------~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvv  867 (968)
T PLN00113        801 SPAVVVGNLSPEKIIIDG--KDEPHL-RLSLPGLLCTDTK----------CFISSAYVAPETRETKDITEKSDIYGFGLI  867 (968)
T ss_pred             CCCeecCCCCHHhEEECC--CCceEE-EeccccccccCCC----------ccccccccCcccccCCCCCcccchhhHHHH
Confidence            669999999999999985  444443 3665544322211          123567888888877778888999999987


Q ss_pred             HHHHHH
Q 004254          532 AQFFLN  537 (765)
Q Consensus       532 ~~~~l~  537 (765)
                      +.+++.
T Consensus       868 l~el~t  873 (968)
T PLN00113        868 LIELLT  873 (968)
T ss_pred             HHHHHh
Confidence            776654

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=98.99  E-value=1.3e-09  Score=113.87  Aligned_cols=196  Identities=18%  Similarity=0.231  Sum_probs=127.3

Q ss_pred             hhhcccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004254          291 DVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (765)
Q Consensus       291 eiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (765)
                      +.|..+++ +-+|.|..+.|-|+..  +|.+.|+|+.--.....                            ..+-..++
T Consensus        14 ~fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~----------------------------~~e~~~~~   65 (411)
T KOG0599|consen   14 GFYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTE----------------------------SGETPYEM   65 (411)
T ss_pred             hHHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEeccccc----------------------------CCccHHHH
Confidence            34555555 6789999999999988  58999999872221110                            00113455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCC---HHHHHHHHH
Q 004254          368 ASVLYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVD---RKRLGRYAV  443 (765)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d---~~~ia~~li  443 (765)
                      .+...+|++..         ++ ..++|+| .+-.+| +-.+-.+||.|.++-+.|.|+.... -.++   ..++++.++
T Consensus        66 ~EaT~~Ev~IL---------Rq-v~GHP~II~l~D~y-es~sF~FlVFdl~prGELFDyLts~-VtlSEK~tR~iMrqlf  133 (411)
T KOG0599|consen   66 REATRQEISIL---------RQ-VMGHPYIIDLQDVY-ESDAFVFLVFDLMPRGELFDYLTSK-VTLSEKETRRIMRQLF  133 (411)
T ss_pred             HHHHHHHHHHH---------HH-hcCCCcEEEeeeec-cCcchhhhhhhhcccchHHHHhhhh-eeecHHHHHHHHHHHH
Confidence            55555555433         22 2244443 344444 3345568999999999999975321 1122   223333333


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC----
Q 004254          444 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL----  519 (765)
Q Consensus       444 ~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~----  519 (765)
                      +. ...+|...++|+|+||.|||+++  +.+|++.|||.+.++.+..+  +.+     +.+++.+++++.++-...    
T Consensus       134 eg-VeylHa~~IVHRDLKpENILldd--n~~i~isDFGFa~~l~~Gek--Lre-----lCGTPgYLAPEtikC~m~e~~p  203 (411)
T KOG0599|consen  134 EG-VEYLHARNIVHRDLKPENILLDD--NMNIKISDFGFACQLEPGEK--LRE-----LCGTPGYLAPETIKCSMYENHP  203 (411)
T ss_pred             HH-HHHHHHhhhhhcccChhheeecc--ccceEEeccceeeccCCchh--HHH-----hcCCCcccChhheeeecccCCC
Confidence            32 46678999999999999999987  78999999999999998765  222     368999999998864332    


Q ss_pred             --CCCCCHHHHHHHHHHHH
Q 004254          520 --VPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       520 --~~~~D~~~l~~~~~~~l  536 (765)
                        +...|.++....+.-++
T Consensus       204 GYs~EVD~Wa~GVImyTLL  222 (411)
T KOG0599|consen  204 GYSKEVDEWACGVIMYTLL  222 (411)
T ss_pred             CccchhhHHHHHHHHHHHH
Confidence              33467777776655544

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=98.97  E-value=1.2e-09  Score=119.83  Aligned_cols=163  Identities=18%  Similarity=0.274  Sum_probs=106.6

Q ss_pred             ccCCCHHHHHHHHhhhhCCCCCChHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEe-C----CeEEEEEEec
Q 004254          251 VDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-K----GEEVVVKVQR  325 (765)
Q Consensus       251 ~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l-~----G~~VAVKVqr  325 (765)
                      .|+.+....+++.+|+..+|-..                 +.|  -..++||.|+|+.||+|++ .    ++.||+|-.+
T Consensus        13 ~d~~~~~k~ee~~~l~q~~p~~~-----------------~~~--~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~   73 (418)
T KOG1167|consen   13 SDISAEDKGEEIEQLRQDIPFIS-----------------NAY--KVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIY   73 (418)
T ss_pred             hhcchhhhhhHHHHHHhhhhhhh-----------------hhh--hhhccccccchhhhhhhhHhhhccccceEeeeecc
Confidence            35555555577777776655322                 111  2346899999999999998 3    5789999664


Q ss_pred             CCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCCcccccee
Q 004254          326 PGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAA---NAELFASNFKDMDYVKVPTI  402 (765)
Q Consensus       326 P~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~---Nl~rf~~~f~~~~~V~vP~v  402 (765)
                      +-..                              +        ..+..|+.+..++.   |+..+...+..         
T Consensus        74 ~ts~------------------------------p--------~ri~~El~~L~~~gG~~ni~~~~~~~rn---------  106 (418)
T KOG1167|consen   74 RTSS------------------------------P--------SRILNELEMLYRLGGSDNIIKLNGCFRN---------  106 (418)
T ss_pred             cccC------------------------------c--------hHHHHHHHHHHHhccchhhhcchhhhcc---------
Confidence            3211                              1        12344555555543   44444444433         


Q ss_pred             eeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEee
Q 004254          403 FWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDF  480 (765)
Q Consensus       403 y~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDF  480 (765)
                          .++.++||||.+-....++..    +++-..+-..+..  ..+.++|..|++|+|+||+|++.+. ..++-.|+||
T Consensus       107 ----nd~v~ivlp~~~H~~f~~l~~----~l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~-~t~rg~LvDF  177 (418)
T KOG1167|consen  107 ----NDQVAIVLPYFEHDRFRDLYR----SLSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNR-RTQRGVLVDF  177 (418)
T ss_pred             ----CCeeEEEecccCccCHHHHHh----cCCHHHHHHHHHHHHHHhhhhhccCccccCCCcccccccc-ccCCceEEec
Confidence                356689999999887777542    2333344333333  2377889999999999999999986 5788999999


Q ss_pred             cceeccCh
Q 004254          481 GMMGSISP  488 (765)
Q Consensus       481 Glv~~L~~  488 (765)
                      |++...+.
T Consensus       178 gLA~~~d~  185 (418)
T KOG1167|consen  178 GLAQRYDG  185 (418)
T ss_pred             hhHHHHHh
Confidence            99986443

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.95  E-value=1.3e-09  Score=107.85  Aligned_cols=141  Identities=23%  Similarity=0.264  Sum_probs=93.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|.+|.|++|+.  +++-||+|-.|-+-.+.                                  -+..+..+|+.
T Consensus         8 ekigegtygtvfkarn~~t~eivalkrvrldddde----------------------------------gvpssalreic   53 (292)
T KOG0662|consen    8 EKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDE----------------------------------GVPSSALREIC   53 (292)
T ss_pred             HhhcCCcceeeEecccCCccceEEEEEEeccCCCC----------------------------------CCcHHHHHHHH
Confidence            5799999999999998  58999999775432221                                  11234456777


Q ss_pred             HHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHH---HHHHH
Q 004254          377 YTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESY---LEQIL  451 (765)
Q Consensus       377 f~~EA~--Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~---L~qi~  451 (765)
                      +.+|.+  |+.++...+..             ..+..||.|||+-. |..+...-...+|+. +++..+-..   +..+|
T Consensus        54 llkelkhknivrl~dvlhs-------------dkkltlvfe~cdqd-lkkyfdslng~~d~~-~~rsfmlqllrgl~fch  118 (292)
T KOG0662|consen   54 LLKELKHKNIVRLHDVLHS-------------DKKLTLVFEFCDQD-LKKYFDSLNGDLDPE-IVRSFMLQLLRGLGFCH  118 (292)
T ss_pred             HHHHhhhcceeehhhhhcc-------------CceeEEeHHHhhHH-HHHHHHhcCCcCCHH-HHHHHHHHHHhhhhhhh
Confidence            777765  66666543322             24558999999752 222211112223433 333332222   34467


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhh
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNI  490 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~  490 (765)
                      .+++.|+|+||.|++++.  +|.+++.|||+++.+.-..
T Consensus       119 shnvlhrdlkpqnllin~--ngelkladfglarafgipv  155 (292)
T KOG0662|consen  119 SHNVLHRDLKPQNLLINR--NGELKLADFGLARAFGIPV  155 (292)
T ss_pred             hhhhhhccCCcceEEecc--CCcEEecccchhhhcCCce
Confidence            899999999999999996  8999999999998765443

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.93  E-value=3.4e-09  Score=113.00  Aligned_cols=241  Identities=20%  Similarity=0.290  Sum_probs=150.4

Q ss_pred             hcccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004254          293 FERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (765)
Q Consensus       293 F~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (765)
                      ..+|+. +.||.||++.|-.+++  +.+-+|+||.+...-.                       ....+||+..-..+  
T Consensus       249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~n-----------------------ddedidwvqtek~v--  303 (593)
T KOG0695|consen  249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVN-----------------------DDEDIDWVQTEKHV--  303 (593)
T ss_pred             cccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcC-----------------------CcccchhHHhhHHH--
Confidence            446765 7899999999999999  5789999987433211                       11234565321111  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhh-hhhhhhcCCCHHHHHHHHHHHHH
Q 004254          370 VLYQEIDYTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINR-IQSLDELGVDRKRLGRYAVESYL  447 (765)
Q Consensus       370 ~l~~ElDf~~EA~Nl~rf~~~f~~~~~-V~vP~vy~e~st~~vLVMEyieG~~L~d-~~~l~~~g~d~~~ia~~li~~~L  447 (765)
                                       |. .-.++|. |-....+ +..++.+.|.||++|+.|.- ....++......+....-+...+
T Consensus       304 -----------------fe-~asn~pflvglhscf-qtesrlffvieyv~ggdlmfhmqrqrklpeeharfys~ei~lal  364 (593)
T KOG0695|consen  304 -----------------FE-QASNNPFLVGLHSCF-QTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLAL  364 (593)
T ss_pred             -----------------HH-hccCCCeEEehhhhh-cccceEEEEEEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHH
Confidence                             00 1111121 1111112 22456799999999998753 22223333334444455566778


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceec-cChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004254          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS-ISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~-L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~  526 (765)
                      +.+|+.|++.+|+|-.|+|++.  .|.|+|.|+||++. +.+.+.       .....+++.+++++++.-.-..-.+|-+
T Consensus       365 ~flh~rgiiyrdlkldnvllda--eghikltdygmcke~l~~gd~-------tstfcgtpnyiapeilrgeeygfsvdww  435 (593)
T KOG0695|consen  365 NFLHERGIIYRDLKLDNVLLDA--EGHIKLTDYGMCKEGLGPGDT-------TSTFCGTPNYIAPEILRGEEYGFSVDWW  435 (593)
T ss_pred             HHHhhcCeeeeeccccceEEcc--CCceeecccchhhcCCCCCcc-------cccccCCCcccchhhhcccccCceehHH
Confidence            9999999999999999999986  89999999999985 444332       1224579999999999876666678888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCChhHHHHHHHHH
Q 004254          527 AVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFS  606 (765)
Q Consensus       527 ~l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~l~~l~~~l~~l~~~~~i~lP~~~~~l~Ral~  606 (765)
                      ++...+-+++.        .|..    .+-.|..+|-          .+..   .-++++..+..+++|..+.  +|+..
T Consensus       436 algvlmfemma--------grsp----fdivgm~n~d----------~nte---dylfqvilekqiriprsls--vkas~  488 (593)
T KOG0695|consen  436 ALGVLMFEMMA--------GRSP----FDIVGMDNPD----------MNTE---DYLFQVILEKQIRIPRSLS--VKASH  488 (593)
T ss_pred             HHHHHHHHHHc--------CCCC----cceecCCCcc----------cchh---HHHHHHHhhhcccccceee--hhhHH
Confidence            88765433322        1110    0111111110          1111   2356677788999999854  78888


Q ss_pred             HHHHHhh
Q 004254          607 VLDGIGK  613 (765)
Q Consensus       607 ~leGi~~  613 (765)
                      +|.|+..
T Consensus       489 vlkgfln  495 (593)
T KOG0695|consen  489 VLKGFLN  495 (593)
T ss_pred             HHHHhhc
Confidence            8888764

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.93  E-value=3.7e-09  Score=112.40  Aligned_cols=188  Identities=19%  Similarity=0.209  Sum_probs=121.6

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+-+|+|.+|.|-.++.  +|.++||||.-.-                       |             ...+..+.+|+
T Consensus        83 ~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq-----------------------~-------------gHsR~RvfREV  126 (463)
T KOG0607|consen   83 SELLGEGAYASVQTCVSIQTGKEYAVKIIDKQ-----------------------P-------------GHSRSRVFREV  126 (463)
T ss_pred             HHHhcCccceeeeeeeeeccchhhhhhhhhcC-----------------------C-------------chHHHHHHHHH
Confidence            35799999999999987  8999999986211                       0             01123334444


Q ss_pred             HHHHHH---HHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHH--HHHHHHHHHHHHH
Q 004254          376 DYTQEA---ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR--LGRYAVESYLEQI  450 (765)
Q Consensus       376 Df~~EA---~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~--ia~~li~~~L~qi  450 (765)
                      ......   .|+..+-+.|.+             .++.|||||-+.|++|-.-... ..-++..+  ....-+...|..+
T Consensus       127 e~f~~Cqgh~nilqLiefFEd-------------d~~FYLVfEKm~GGplLshI~~-~~~F~E~EAs~vvkdia~aLdFl  192 (463)
T KOG0607|consen  127 ETFYQCQGHKNILQLIEFFED-------------DTRFYLVFEKMRGGPLLSHIQK-RKHFNEREASRVVKDIASALDFL  192 (463)
T ss_pred             HHHHHhcCCccHHHHHHHhcc-------------cceEEEEEecccCchHHHHHHH-hhhccHHHHHHHHHHHHHHHHHH
Confidence            433333   255555555554             5678999999999998653221 11122221  1222345668999


Q ss_pred             HhCCccccCCCCCcEEEeecCC-CcEEEEeecceecc------ChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----CC
Q 004254          451 LSHGFFHADPHPGNIAVDDVNG-GRLIFYDFGMMGSI------SPNIREGLLEAFYGIYEKDADKVLQAMVQM-----GV  518 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~-g~l~LiDFGlv~~L------~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-----G~  518 (765)
                      |..||-|+|+||.|||..+++. ..++|+||-+..-+      ++...-.+     ..--+..++|++++.+.     -+
T Consensus       193 H~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L-----~tPvGSAEfMAPEVVd~fv~qA~~  267 (463)
T KOG0607|consen  193 HTKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPEL-----LTPVGSAEFMAPEVVDVFVDQATF  267 (463)
T ss_pred             hhcCcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccc-----cCcccchhhcchhHHhhhcccccc
Confidence            9999999999999999986222 25899999765432      11111111     11235677888877764     35


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHH
Q 004254          519 LVPTGDTTAVRRTAQFFLNSFE  540 (765)
Q Consensus       519 ~~~~~D~~~l~~~~~~~l~~~~  540 (765)
                      +....|.+++...++.|+..|.
T Consensus       268 YDKrCDlwSLGvIlYImLsGYp  289 (463)
T KOG0607|consen  268 YDKRCDLWSLGVILYIMLSGYP  289 (463)
T ss_pred             ccccccHHHHHHHHHHHHhCCC
Confidence            5667899999999999988874

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=98.92  E-value=7.3e-10  Score=115.37  Aligned_cols=138  Identities=20%  Similarity=0.281  Sum_probs=89.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      .-||.|+||.||+-++  .|+..|||-.|-...+                                   .-..++..|+|
T Consensus        70 g~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~-----------------------------------keq~rll~e~d  114 (361)
T KOG1006|consen   70 GEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIE-----------------------------------KEQKRLLMEHD  114 (361)
T ss_pred             HHhcCCcchhhhhhhcCccCcEEEEEEeeeccch-----------------------------------HHHHHHHHHHH
Confidence            4699999999999999  6999999977543321                                   11234555666


Q ss_pred             HHHHHH---HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhh----hhhcCCCHHHHHHHH-HH--HH
Q 004254          377 YTQEAA---NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQS----LDELGVDRKRLGRYA-VE--SY  446 (765)
Q Consensus       377 f~~EA~---Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~----l~~~g~d~~~ia~~l-i~--~~  446 (765)
                      -...+.   |+.+|....-.             .+..|+.||.++- +++.+-.    ..+..+. +.|...+ +.  ..
T Consensus       115 ~~mks~~cp~IVkfyGa~F~-------------EGdcWiCMELMd~-SlDklYk~vy~vq~~~ip-E~Ilg~ItvatV~A  179 (361)
T KOG1006|consen  115 TVMKSSNCPNIVKFYGALFS-------------EGDCWICMELMDI-SLDKLYKRVYSVQKSRIP-ENILGHITVATVDA  179 (361)
T ss_pred             HHHhhcCCcHHHHHhhhhhc-------------CCceeeeHHHHhh-hHHHHHHHHHHHHhccCc-HhhhhheeeeehhH
Confidence            554443   67777654311             3678999999873 3333211    1111222 2222221 11  12


Q ss_pred             HHHHH-hCCccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004254          447 LEQIL-SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (765)
Q Consensus       447 L~qi~-~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (765)
                      |.++- ...++|||+||.|||++.  .|.++|+|||++|.+-.
T Consensus       180 L~yLK~~lkiIHRDvKPSNILldr--~G~vKLCDFGIcGqLv~  220 (361)
T KOG1006|consen  180 LDYLKEELKIIHRDVKPSNILLDR--HGDVKLCDFGICGQLVD  220 (361)
T ss_pred             HHHHHHHhhhhhccCChhheEEec--CCCEeeecccchHhHHH
Confidence            33333 568999999999999996  89999999999998754

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.91  E-value=1.7e-09  Score=122.47  Aligned_cols=102  Identities=18%  Similarity=0.224  Sum_probs=72.6

Q ss_pred             cCCCeEEEEeecCCCChhhhhhhhhcCCC--HHHHHHHHHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecce
Q 004254          406 YTTPQILTMEYVPGIKINRIQSLDELGVD--RKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM  483 (765)
Q Consensus       406 ~st~~vLVMEyieG~~L~d~~~l~~~g~d--~~~ia~~li~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv  483 (765)
                      |.++.|+..|||.|+-++.+.---..++.  .-++....+-..|..+|...++|+|+|.||||++-  +|.|.|.|||..
T Consensus       100 ~enkLwiliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~Tl--dGdirLADFGVS  177 (1187)
T KOG0579|consen  100 FENKLWILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTL--DGDIRLADFGVS  177 (1187)
T ss_pred             ccCceEEEEeecCCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEe--cCcEeeeccccc
Confidence            45778999999999998876422222233  23333444445688899999999999999999997  999999999998


Q ss_pred             eccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004254          484 GSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (765)
Q Consensus       484 ~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~  515 (765)
                      .........  .+.|    -+++.+|++++..
T Consensus       178 AKn~~t~qk--RDsF----IGTPYWMAPEVvm  203 (1187)
T KOG0579|consen  178 AKNKSTRQK--RDSF----IGTPYWMAPEVVM  203 (1187)
T ss_pred             ccchhHHhh--hccc----cCCcccccchhee
Confidence            776543211  1222    3578888887653

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=98.91  E-value=1.6e-09  Score=111.68  Aligned_cols=180  Identities=18%  Similarity=0.247  Sum_probs=117.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|.|..|+|+..  +|+..|+|+..          ++      .+-.          .++.              +
T Consensus        17 e~igkG~FSvVrRc~~~~tg~~fa~kiin----------~~------k~~~----------~~~e--------------~   56 (355)
T KOG0033|consen   17 EELGKGAFSVVRRCVHKTTGLEFAAKIIN----------TK------KLSA----------RDFQ--------------K   56 (355)
T ss_pred             HHHccCchHHHHHHHhccchHHHHHHHhh----------hh------hhcc----------ccHH--------------H
Confidence            4588999999999988  69998888661          11      1100          0111              2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhh-hhhhhhcCCCHHHHHHHHHHHH-------HH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINR-IQSLDELGVDRKRLGRYAVESY-------LE  448 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d-~~~l~~~g~d~~~ia~~li~~~-------L~  448 (765)
                      +.+||+    +.+++++..-+..-+.|.+ .+-++||.|+++|..|-. +.+       +.-..+..+..|       +.
T Consensus        57 l~rEar----IC~~LqHP~IvrL~~ti~~-~~~~ylvFe~m~G~dl~~eIV~-------R~~ySEa~aSH~~rQiLeal~  124 (355)
T KOG0033|consen   57 LEREAR----ICRKLQHPNIVRLHDSIQE-ESFHYLVFDLVTGGELFEDIVA-------REFYSEADASHCIQQILEALA  124 (355)
T ss_pred             HHHHHH----HHHhcCCCcEeehhhhhcc-cceeEEEEecccchHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            234553    4445555333333333321 345799999999998764 221       122222223333       45


Q ss_pred             HHHhCCccccCCCCCcEEEeecCC-CcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNG-GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~-g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~  527 (765)
                      ++|..|++|+|+||.|+++....+ -.++|.|||++..++...      ++.+ ..+.+.+|++++..-.-++...|+++
T Consensus       125 yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g~------~~~G-~~GtP~fmaPEvvrkdpy~kpvDiW~  197 (355)
T KOG0033|consen  125 YCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDGE------AWHG-FAGTPGYLSPEVLKKDPYSKPVDIWA  197 (355)
T ss_pred             HHHhcCceeccCChhheeeeeccCCCceeecccceEEEeCCcc------cccc-ccCCCcccCHHHhhcCCCCCcchhhh
Confidence            567899999999999999975223 369999999999998432      2223 45899999999999988888999998


Q ss_pred             HHHHHHHHHH
Q 004254          528 VRRTAQFFLN  537 (765)
Q Consensus       528 l~~~~~~~l~  537 (765)
                      -...+..++.
T Consensus       198 cGViLfiLL~  207 (355)
T KOG0033|consen  198 CGVILYILLV  207 (355)
T ss_pred             hhHHHHHHHh
Confidence            7766555544

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=98.90  E-value=6.9e-09  Score=116.00  Aligned_cols=176  Identities=26%  Similarity=0.323  Sum_probs=101.5

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCC--chhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPG--LKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~--i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      -.|.|-|+.|.+|..  .|+.|||||+|-+  +.+.=..++.||+.+...    .|                        
T Consensus       439 ~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~A----D~------------------------  490 (752)
T KOG0670|consen  439 YTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDA----DP------------------------  490 (752)
T ss_pred             ccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhcc----Cc------------------------
Confidence            579999999999999  5999999999765  222333455555544321    11                        


Q ss_pred             HHHHHHH-HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHH-----
Q 004254          376 DYTQEAA-NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQ-----  449 (765)
Q Consensus       376 Df~~EA~-Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~q-----  449 (765)
                          |-+ +..++...|.+             ....|||.|-+. ..|.++.  ...|.+-. +--..++.|.+|     
T Consensus       491 ----Edk~Hclrl~r~F~h-------------knHLClVFE~Ls-lNLRevL--KKyG~nvG-L~ikaVRsYaqQLflAL  549 (752)
T KOG0670|consen  491 ----EDKFHCLRLFRHFKH-------------KNHLCLVFEPLS-LNLREVL--KKYGRNVG-LHIKAVRSYAQQLFLAL  549 (752)
T ss_pred             ----hhhhHHHHHHHHhhh-------------cceeEEEehhhh-chHHHHH--HHhCcccc-eeehHHHHHHHHHHHHH
Confidence                111 22333333332             345678877653 2233332  22221100 001123444444     


Q ss_pred             --HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHH
Q 004254          450 --ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTT  526 (765)
Q Consensus       450 --i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~-~~~~D~~  526 (765)
                        +-..||+|+|+||.||||+. ....++|||||.+...++..-..|+   ..-+.+-++     ++ +|+. .-..|++
T Consensus       550 klLK~c~vlHaDIKPDNiLVNE-~k~iLKLCDfGSA~~~~eneitPYL---VSRFYRaPE-----Ii-LG~~yd~~iD~W  619 (752)
T KOG0670|consen  550 KLLKKCGVLHADIKPDNILVNE-SKNILKLCDFGSASFASENEITPYL---VSRFYRAPE-----II-LGLPYDYPIDTW  619 (752)
T ss_pred             HHHHhcCeeecccCccceEecc-CcceeeeccCccccccccccccHHH---HHHhccCcc-----ee-ecCcccCCccce
Confidence              44789999999999999985 5567999999999998876544432   221222222     21 3442 2345777


Q ss_pred             HHHHHHHH
Q 004254          527 AVRRTAQF  534 (765)
Q Consensus       527 ~l~~~~~~  534 (765)
                      ++...+++
T Consensus       620 SvgctLYE  627 (752)
T KOG0670|consen  620 SVGCTLYE  627 (752)
T ss_pred             eeceeeEE
Confidence            77665543

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=98.90  E-value=4.1e-09  Score=106.56  Aligned_cols=173  Identities=19%  Similarity=0.242  Sum_probs=106.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      .-||.|.+|||-+-++  +|+-.|||-.+--+.                                   ......+..|+|
T Consensus        52 ~elGrGayG~vekmrh~~sg~imAvKri~~tvn-----------------------------------~q~q~r~L~dld   96 (282)
T KOG0984|consen   52 EELGRGAYGVVEKMRHIQSGTIMAVKRIRATVN-----------------------------------SQEQKRLLMDLD   96 (282)
T ss_pred             hhhcCCccchhhheeeccCCeEEEEeeehhhcC-----------------------------------hHHHHHHHHhhh
Confidence            3589999999988888  799999996533222                                   112233444444


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc-----CCCeEEEEeecCCCChhhh--hhhhhcCCCHHHHHHHHHHHH---
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY-----TTPQILTMEYVPGIKINRI--QSLDELGVDRKRLGRYAVESY---  446 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~-----st~~vLVMEyieG~~L~d~--~~l~~~g~d~~~ia~~li~~~---  446 (765)
                      ..+               ..+..|..+.-|     +.+-++.||.++- +++.+  ..++..+.-++.+...++-+.   
T Consensus        97 i~~---------------r~~~CPf~V~FyGa~~regdvwIcME~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~a  160 (282)
T KOG0984|consen   97 IIM---------------RTVDCPFTVHFYGALFREGDVWICMELMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHA  160 (282)
T ss_pred             hhc---------------cCCCCCeEEEeehhhhccccEEEeHHHhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHH
Confidence            321               123344433322     5677999999863 34432  123444444454444444333   


Q ss_pred             HHHHH-hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC----C
Q 004254          447 LEQIL-SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV----P  521 (765)
Q Consensus       447 L~qi~-~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~----~  521 (765)
                      +..+| ...++|||.||+|||++.  +|+++++|||.++.+.+...    .   .+..+=..+++++.++-+.-.    -
T Consensus       161 l~~L~~kL~vIHRDvKPsNiLIn~--~GqVKiCDFGIsG~L~dSiA----k---t~daGCkpYmaPEri~~e~n~~gY~v  231 (282)
T KOG0984|consen  161 LEFLHSKLSVIHRDVKPSNILINY--DGQVKICDFGISGYLVDSIA----K---TMDAGCKPYMAPERINPELNQKGYSV  231 (282)
T ss_pred             HHHHHHHhhhhhccCCcceEEEcc--CCcEEEcccccceeehhhhH----H---HHhcCCCccCChhhcCcccCccccee
Confidence            44445 457999999999999997  99999999999999976432    2   222344566677666544322    2


Q ss_pred             CCCHHHHHHH
Q 004254          522 TGDTTAVRRT  531 (765)
Q Consensus       522 ~~D~~~l~~~  531 (765)
                      ..|++++.-.
T Consensus       232 ksDvWSLGIt  241 (282)
T KOG0984|consen  232 KSDVWSLGIT  241 (282)
T ss_pred             ehhhhhhhhh
Confidence            4577776643

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.90  E-value=1.1e-08  Score=103.22  Aligned_cols=147  Identities=19%  Similarity=0.249  Sum_probs=90.8

Q ss_pred             CcccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          297 DVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       297 d~~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      +-+|++.|..++||+.+. +|+.+++|+.+++....                                         ...
T Consensus         2 ~~~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~-----------------------------------------~~~   40 (223)
T cd05154           2 EVRQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLP-----------------------------------------SAH   40 (223)
T ss_pred             cceecCCCccceEEEEEecCCcceEEEeCCCcccCc-----------------------------------------ccc
Confidence            347899999999999998 46999999864432100                                         011


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCC-----CeEEEEeecCCCChhhhhh----------------------h
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTT-----PQILTMEYVPGIKINRIQS----------------------L  428 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st-----~~vLVMEyieG~~L~d~~~----------------------l  428 (765)
                      ++.+|+..+..+++.     .+.+|+++.-...     ..+++|||++|.++.+...                      +
T Consensus        41 ~~~~E~~~~~~l~~~-----~~~vp~~~~~~~~~~~~~~~~~v~e~i~G~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~l  115 (223)
T cd05154          41 DVAREYRVLRALAGT-----GVPVPKVLALCEDPSVLGTPFYVMERVDGRVLRDRLLRPELSPEERRALARALADTLAAL  115 (223)
T ss_pred             cHHHHHHHHHHhhCC-----CCCCCCEEEECCCCCccCCceEEEEEeCCEecCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            456677777776542     4678887764433     3589999999998866321                      0


Q ss_pred             hhc-----CC---C------HHHHHHH-------------HHHHHHHHH-------HhCCccccCCCCCcEEEeecCCCc
Q 004254          429 DEL-----GV---D------RKRLGRY-------------AVESYLEQI-------LSHGFFHADPHPGNIAVDDVNGGR  474 (765)
Q Consensus       429 ~~~-----g~---d------~~~ia~~-------------li~~~L~qi-------~~~GffHaDpHPGNILV~~~~~g~  474 (765)
                      ...     +.   .      ...+...             .+...++.+       ...+++|+|+||+||++++..++.
T Consensus       116 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~  195 (223)
T cd05154         116 HSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRV  195 (223)
T ss_pred             hCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcE
Confidence            000     00   0      0000000             001111111       136789999999999998411356


Q ss_pred             EEEEeecceeccChh
Q 004254          475 LIFYDFGMMGSISPN  489 (765)
Q Consensus       475 l~LiDFGlv~~L~~~  489 (765)
                      +.+|||+.++.-++.
T Consensus       196 ~~iID~e~~~~g~~~  210 (223)
T cd05154         196 VAVLDWELATLGDPL  210 (223)
T ss_pred             EEEEeccccccCChH
Confidence            889999999876653

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.89  E-value=2.5e-09  Score=117.94  Aligned_cols=169  Identities=17%  Similarity=0.163  Sum_probs=105.5

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +-||.|-||.|+||.+.|+.|||||-.---++.-.++-+|..                                 -.-++
T Consensus       217 e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE~SWfrEtEIYq---------------------------------TvmLR  263 (513)
T KOG2052|consen  217 EIIGKGRFGEVWRGRWRGEDVAVKIFSSRDERSWFRETEIYQ---------------------------------TVMLR  263 (513)
T ss_pred             EEecCccccceeeccccCCceEEEEecccchhhhhhHHHHHH---------------------------------HHHhc
Confidence            579999999999999999999999873322221111111100                                 00011


Q ss_pred             HHHHHHHHHHH-hcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHH----
Q 004254          379 QEAANAELFAS-NFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQIL----  451 (765)
Q Consensus       379 ~EA~Nl~rf~~-~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~--~L~qi~----  451 (765)
                      .  .|+-.|-. ..++.          ...|+.+||.+|-|-++|.|+..  ...++.+.........  -|.++|    
T Consensus       264 H--ENILgFIaaD~~~~----------gs~TQLwLvTdYHe~GSL~DyL~--r~tv~~~~ml~LalS~AsGLaHLH~eI~  329 (513)
T KOG2052|consen  264 H--ENILGFIAADNKDN----------GSWTQLWLVTDYHEHGSLYDYLN--RNTVTTEGMLKLALSIASGLAHLHMEIV  329 (513)
T ss_pred             c--chhhhhhhccccCC----------CceEEEEEeeecccCCcHHHHHh--hccCCHHHHHHHHHHHhhhHHHHHHHHh
Confidence            1  13333321 11111          23578899999999999999854  3445555444443322  244555    


Q ss_pred             ----hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004254          452 ----SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  518 (765)
Q Consensus       452 ----~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~  518 (765)
                          ...+-|||+|.-||||..  +|..++.|+|++-+.+...  ..++.-..---++..+|++++++-.+
T Consensus       330 GTqgKPaIAHRDlKSKNILVKk--n~~C~IADLGLAv~h~~~t--~~idi~~N~rVGTKRYMAPEvLdeti  396 (513)
T KOG2052|consen  330 GTQGKPAIAHRDLKSKNILVKK--NGTCCIADLGLAVRHDSDT--DTIDIPPNPRVGTKRYMAPEVLDETI  396 (513)
T ss_pred             cCCCCchhhccccccccEEEcc--CCcEEEeeceeeEEecccC--CcccCCCCCccceeeccChHHhhhhc
Confidence                346999999999999986  8999999999998876653  11111111113567889999887543

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=98.89  E-value=3.6e-09  Score=123.71  Aligned_cols=178  Identities=17%  Similarity=0.181  Sum_probs=123.3

Q ss_pred             cccccccceeE-EEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQ-VHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       298 ~~PIgsaSiGQ-VhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++-+|.||-|. ||+|...|++||||-                                       ++.|+.....+|++
T Consensus       514 ~eilG~Gs~Gt~Vf~G~ye~R~VAVKr---------------------------------------ll~e~~~~A~rEi~  554 (903)
T KOG1027|consen  514 KEILGYGSNGTVVFRGVYEGREVAVKR---------------------------------------LLEEFFDFAQREIQ  554 (903)
T ss_pred             HHHcccCCCCcEEEEEeeCCceehHHH---------------------------------------HhhHhHHHHHHHHH
Confidence            45677888875 699999999999992                                       23445555667777


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCC-----eEEEEeecCCCChhhhhhhh-----hcC-CCHHHHHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTP-----QILTMEYVPGIKINRIQSLD-----ELG-VDRKRLGRYAVES  445 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~-----~vLVMEyieG~~L~d~~~l~-----~~g-~d~~~ia~~li~~  445 (765)
                      ..+|..          ++     |.|+.-||++     .|++.|.|.- +|.|+....     ..+ +++..+...++. 
T Consensus       555 lL~eSD----------~H-----~NviRyyc~E~d~qF~YIalELC~~-sL~dlie~~~~d~~~~~~i~~~~~l~q~~~-  617 (903)
T KOG1027|consen  555 LLQESD----------EH-----PNVIRYYCSEQDRQFLYIALELCAC-SLQDLIESSGLDVEMQSDIDPISVLSQIAS-  617 (903)
T ss_pred             HHHhcc----------CC-----CceEEEEeeccCCceEEEEehHhhh-hHHHHHhccccchhhcccccHHHHHHHHHH-
Confidence            766653          22     3333334443     4899999864 677765432     111 333333333333 


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeec---CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004254          446 YLEQILSHGFFHADPHPGNIAVDDV---NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (765)
Q Consensus       446 ~L~qi~~~GffHaDpHPGNILV~~~---~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~  522 (765)
                      .+.++|.-+++|||+||.||||..+   ...+++|.|||++++++... ..+..  .+-..+...+++++++........
T Consensus       618 GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~-sS~~r--~s~~sGt~GW~APE~L~~~~~~~a  694 (903)
T KOG1027|consen  618 GLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGK-SSFSR--LSGGSGTSGWQAPEQLREDRKTQA  694 (903)
T ss_pred             HHHHHHhcccccccCCCceEEEEccCCCcceeEEecccccccccCCCc-chhhc--ccCCCCcccccCHHHHhccccCcc
Confidence            5788999999999999999999852   22478999999999998753 34444  444678899999999998887778


Q ss_pred             CCHHHHHHHHHH
Q 004254          523 GDTTAVRRTAQF  534 (765)
Q Consensus       523 ~D~~~l~~~~~~  534 (765)
                      +|+.++...+.+
T Consensus       695 vDiFslGCvfyY  706 (903)
T KOG1027|consen  695 VDIFSLGCVFYY  706 (903)
T ss_pred             cchhhcCceEEE
Confidence            898887765443

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.89  E-value=3.3e-08  Score=105.55  Aligned_cols=104  Identities=14%  Similarity=0.013  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcccccee--eecc-----CCCeEEEEeecCCC-Chhhhhhhh-hcCCCH---HHHHHHHH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTI--FWEY-----TTPQILTMEYVPGI-KINRIQSLD-ELGVDR---KRLGRYAV  443 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~v--y~e~-----st~~vLVMEyieG~-~L~d~~~l~-~~g~d~---~~ia~~li  443 (765)
                      .+.+|.+++.++.+     .+|.+|.+  |.+.     ....+||||+++|. ++.++.... ....+.   ..+... +
T Consensus        74 ~a~rE~~~l~~L~~-----~GIptP~pVa~~e~~~~~~~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~-l  147 (268)
T PRK15123         74 GADREWRAIHRLHE-----VGVDTMTGVAFGERGSNPATRTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKR-V  147 (268)
T ss_pred             HHHHHHHHHHHHHH-----cCCCCCCeeEEEEecCCCccceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHH-H
Confidence            35688899999876     35778877  4332     23479999999996 787764211 111111   122222 4


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEee-----cCCCcEEEEeecceec
Q 004254          444 ESYLEQILSHGFFHADPHPGNIAVDD-----VNGGRLIFYDFGMMGS  485 (765)
Q Consensus       444 ~~~L~qi~~~GffHaDpHPGNILV~~-----~~~g~l~LiDFGlv~~  485 (765)
                      ..++.++|..|++|+|++|+|||++.     ..+.++.+|||+.+..
T Consensus       148 a~~i~~LH~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        148 ATMVRDMHAAGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             HHHHHHHHHCcCccCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            55678899999999999999999974     1246899999998853

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.88  E-value=8e-09  Score=116.39  Aligned_cols=183  Identities=17%  Similarity=0.205  Sum_probs=114.0

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +-||+|+-..||++.. +.+-+|+|-..-                    .         ..|.. .++          -|
T Consensus       367 k~iG~GGSSkV~kV~~s~~~iyalkkv~~--------------------~---------~~D~q-tl~----------gy  406 (677)
T KOG0596|consen  367 KQIGSGGSSKVFKVLNSDKQIYALKKVVL--------------------L---------EADNQ-TLD----------GY  406 (677)
T ss_pred             HhhcCCCcceeeeeecCCCcchhhhHHHH--------------------h---------hcCHH-HHH----------HH
Confidence            5799999999999998 556666662200                    0         00111 111          36


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeecc--CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHH---HHHHHHHHHHHHh
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEY--TTPQILTMEYVPGIKINRIQSLDELGVDRKRLG---RYAVESYLEQILS  452 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~--st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia---~~li~~~L~qi~~  452 (765)
                      .+|..-+.+|..+      ..|-..|.-.  .+..+|||||=+ ..|+.+..-.. +.++....   ...+-.+.+.+|.
T Consensus       407 ~nEI~lL~KLkg~------~~IIqL~DYEv~d~~lYmvmE~Gd-~DL~kiL~k~~-~~~~~~~lk~ywkqML~aV~~IH~  478 (677)
T KOG0596|consen  407 RNEIALLNKLKGH------DKIIQLYDYEVTDGYLYMVMECGD-IDLNKILKKKK-SIDPDWFLKFYWKQMLLAVKTIHQ  478 (677)
T ss_pred             HHHHHHHHHhcCC------ceEEEEeeeeccCceEEEEeeccc-ccHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHHH
Confidence            6677667776542      3344444321  345699999943 45666654322 22221221   2223344677899


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-cCC----------CCC
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-MGV----------LVP  521 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~-lG~----------~~~  521 (765)
                      +|++|.|+||.|+++-   .|.++|||||++..+.+.+..-+.+-    --++..+|.++.+. +..          +.+
T Consensus       479 ~gIVHSDLKPANFLlV---kG~LKLIDFGIA~aI~~DTTsI~kds----QvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r  551 (677)
T KOG0596|consen  479 HGIVHSDLKPANFLLV---KGRLKLIDFGIANAIQPDTTSIVKDS----QVGTVNYMSPEALTDMSSSRENGKSKIKISR  551 (677)
T ss_pred             hceeecCCCcccEEEE---eeeEEeeeechhcccCccccceeecc----ccCcccccCHHHHhhccccccCCCcceeecC
Confidence            9999999999999997   69999999999999887654332221    23566677665543 221          456


Q ss_pred             CCCHHHHHHHHHHHH
Q 004254          522 TGDTTAVRRTAQFFL  536 (765)
Q Consensus       522 ~~D~~~l~~~~~~~l  536 (765)
                      ..|++++.-.++.|+
T Consensus       552 ~SDvWSLGCILYqMv  566 (677)
T KOG0596|consen  552 KSDVWSLGCILYQMV  566 (677)
T ss_pred             ccchhhhhhHHHHHH
Confidence            679999998887775

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=98.87  E-value=4.2e-09  Score=110.15  Aligned_cols=73  Identities=21%  Similarity=0.334  Sum_probs=50.1

Q ss_pred             CHHHHHHHHHHHHHHHHH----hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHH
Q 004254          434 DRKRLGRYAVESYLEQIL----SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV  509 (765)
Q Consensus       434 d~~~ia~~li~~~L~qi~----~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i  509 (765)
                      -+++++..+.-+..+.++    .||++|||+||.|||+++  .|.|+|+|||+++++.+.....       -..+=+.+|
T Consensus       188 iPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILlDe--~GniKlCDFGIsGrlvdSkAht-------rsAGC~~YM  258 (391)
T KOG0983|consen  188 IPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDE--RGNIKLCDFGISGRLVDSKAHT-------RSAGCAAYM  258 (391)
T ss_pred             chHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEEcc--CCCEEeecccccceeecccccc-------cccCCcccc
Confidence            355555554444433333    689999999999999996  8999999999999997754221       123445566


Q ss_pred             HHHHHH
Q 004254          510 LQAMVQ  515 (765)
Q Consensus       510 ~~~l~~  515 (765)
                      +++-++
T Consensus       259 aPERid  264 (391)
T KOG0983|consen  259 APERID  264 (391)
T ss_pred             CccccC
Confidence            665443

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.87  E-value=9.4e-09  Score=117.77  Aligned_cols=176  Identities=15%  Similarity=0.129  Sum_probs=118.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      -.+|.|.+|.||.|++  +....|||-.    .+.                                .+++..-+.+|+.
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEI----pek--------------------------------dsr~~QPLhEEIa  624 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEI----PEK--------------------------------DSREVQPLHEEIA  624 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeec----ccc--------------------------------cchhhccHHHHHH
Confidence            4799999999999999  4567888844    111                                0122334566776


Q ss_pred             HHHHH--HHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCC--CHHHH--HHHHHHHHHHHH
Q 004254          377 YTQEA--ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGV--DRKRL--GRYAVESYLEQI  450 (765)
Q Consensus       377 f~~EA--~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~--d~~~i--a~~li~~~L~qi  450 (765)
                      +....  +|+.++-..+...             +-.-+.||-++|++|+++....-..+  +...+  ....+-.-++++
T Consensus       625 LH~~LrHkNIVrYLGs~sen-------------Gf~kIFMEqVPGGSLSsLLrskWGPlKDNEstm~fYtkQILeGLkYL  691 (1226)
T KOG4279|consen  625 LHSTLRHKNIVRYLGSVSEN-------------GFFKIFMEQVPGGSLSSLLRSKWGPLKDNESTMNFYTKQILEGLKYL  691 (1226)
T ss_pred             HHHHHhhHhHHHHhhccCCC-------------CeEEEEeecCCCCcHHHHHHhccCCCccchhHHHHHHHHHHHHhhhh
Confidence            66554  4777766554432             23457899999999999876443332  22222  222334457888


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC--CCCCCHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL--VPTGDTTAV  528 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~--~~~~D~~~l  528 (765)
                      |+..++|||+|-+|+||+. -.|-+++.|||.++++..-.  ...+.    +.++-.+|++++++-|.-  .+..|+++|
T Consensus       692 Hen~IVHRDIKGDNVLvNT-ySGvlKISDFGTsKRLAgin--P~TET----FTGTLQYMAPEvIDqG~RGYG~aADIWS~  764 (1226)
T KOG4279|consen  692 HENKIVHRDIKGDNVLVNT-YSGVLKISDFGTSKRLAGIN--PCTET----FTGTLQYMAPEVIDQGPRGYGKAADIWSF  764 (1226)
T ss_pred             hhcceeeccccCCcEEEee-ccceEEecccccchhhccCC--ccccc----cccchhhhChHhhccCCcCCCchhhhhhc
Confidence            9999999999999999985 46899999999998874311  11222    356788999999998743  344576666


Q ss_pred             HH
Q 004254          529 RR  530 (765)
Q Consensus       529 ~~  530 (765)
                      .-
T Consensus       765 GC  766 (1226)
T KOG4279|consen  765 GC  766 (1226)
T ss_pred             cc
Confidence            53

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=5.8e-09  Score=122.66  Aligned_cols=184  Identities=16%  Similarity=0.153  Sum_probs=126.3

Q ss_pred             ccccccceeEEEEEEeC-------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +-+|.|.||.||.|...       -+-||||..+-....                                         
T Consensus       492 ~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~-----------------------------------------  530 (774)
T KOG1026|consen  492 EELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAEN-----------------------------------------  530 (774)
T ss_pred             hhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccH-----------------------------------------
Confidence            56999999999999983       256999966333222                                         


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-------cC------CCHHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-------LG------VDRKRL  438 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-------~g------~d~~~i  438 (765)
                      ....||++||.-+..|.     +++|.----+.-.....++|.|||+-+.|.++.....       .+      ++..+.
T Consensus       531 ~~~~dF~REaeLla~l~-----H~nIVrLlGVC~~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~  605 (774)
T KOG1026|consen  531 QARQDFRREAELLAELQ-----HPNIVRLLGVCREGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQF  605 (774)
T ss_pred             HHHHHHHHHHHHHHhcc-----CCCeEEEEEEEccCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHH
Confidence            13458889987666653     3443332223333566799999999999999764321       11      333444


Q ss_pred             HHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHH-HHHHHHhhcCHHHHHHHHHH
Q 004254          439 GRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLL-EAFYGIYEKDADKVLQAMVQ  515 (765)
Q Consensus       439 a~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~-~l~~ai~~~D~~~i~~~l~~  515 (765)
                      ....  +.+-+.++-++.|+|+|+-.-|.||.+  +-.|++.||||++.+-..+-.... +.++     -...|.++-+.
T Consensus       606 L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge--~l~VKIsDfGLsRdiYssDYYk~~~~t~l-----PIRWMppEsIl  678 (774)
T KOG1026|consen  606 LHIATQIAAGMEYLSSHHFVHRDLATRNCLVGE--NLVVKISDFGLSRDIYSSDYYKVRGNTLL-----PIRWMPPESIL  678 (774)
T ss_pred             HHHHHHHHHHHHHHHhCcccccchhhhhceecc--ceEEEecccccchhhhhhhhhcccCCcee-----eeecCCHHHhh
Confidence            4333  344467778999999999999999986  678999999999876554332211 1111     14678888899


Q ss_pred             cCCCCCCCCHHHHHHHHHHH
Q 004254          516 MGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       516 lG~~~~~~D~~~l~~~~~~~  535 (765)
                      .|-.+.+.|+.++...+=++
T Consensus       679 y~kFTteSDVWs~GVvLWEI  698 (774)
T KOG1026|consen  679 YGKFTTESDVWSFGVVLWEI  698 (774)
T ss_pred             cCcccchhhhhhhhhhhhhh
Confidence            99999999999998765443

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=98.78  E-value=4.3e-09  Score=117.29  Aligned_cols=145  Identities=19%  Similarity=0.164  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHHHH
Q 004254          370 VLYQEIDYTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVESY  446 (765)
Q Consensus       370 ~l~~ElDf~~EA~--Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li~~~  446 (765)
                      .+..|-+.+.|++  -+.++++.|++..+             -|+.||-|=|+.|+.+..-+. ...+..+.....+--.
T Consensus       466 Hv~sEr~Im~~~~s~fIvrLYrTfrd~ky-------------vYmLmEaClGGElWTiLrdRg~Fdd~tarF~~acv~EA  532 (732)
T KOG0614|consen  466 HVFSERNIMMECRSDFIVRLYRTFRDSKY-------------VYMLMEACLGGELWTILRDRGSFDDYTARFYVACVLEA  532 (732)
T ss_pred             HHHhHHHHHHhcCchHHHHHHHHhccchh-------------hhhhHHhhcCchhhhhhhhcCCcccchhhhhHHHHHHH
Confidence            4444555555554  46677777776443             368899999999998764322 1122344445555566


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004254          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (765)
Q Consensus       447 L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~  526 (765)
                      +.++|++||+.||+||.|++++.  +|-++|.|||.++.+....+..       .+.+++++++++++--.-....+|.+
T Consensus       533 feYLH~k~iIYRDLKPENllLd~--~Gy~KLVDFGFAKki~~g~KTw-------TFcGTpEYVAPEIILnKGHD~avDyW  603 (732)
T KOG0614|consen  533 FEYLHRKGIIYRDLKPENLLLDN--RGYLKLVDFGFAKKIGSGRKTW-------TFCGTPEYVAPEIILNKGHDRAVDYW  603 (732)
T ss_pred             HHHHHhcCceeccCChhheeecc--CCceEEeehhhHHHhccCCcee-------eecCCcccccchhhhccCcchhhHHH
Confidence            89999999999999999999986  8999999999999998766532       24689999999988665555667888


Q ss_pred             HHHHHHHHHH
Q 004254          527 AVRRTAQFFL  536 (765)
Q Consensus       527 ~l~~~~~~~l  536 (765)
                      ++.-.+.+++
T Consensus       604 aLGIli~ELL  613 (732)
T KOG0614|consen  604 ALGILIYELL  613 (732)
T ss_pred             HHHHHHHHHH
Confidence            8876555544

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=98.72  E-value=2.5e-08  Score=116.45  Aligned_cols=185  Identities=13%  Similarity=0.112  Sum_probs=126.8

Q ss_pred             cccccccceeEEEEEEe--CCe----EEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~----~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      ...||+|.||.||+|.+  +|+    +|||||..-.-...                                        
T Consensus       701 ~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~----------------------------------------  740 (1177)
T KOG1025|consen  701 DKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPK----------------------------------------  740 (1177)
T ss_pred             hceeccccceeEEeeeEecCCceecceeEEEEeeccCCch----------------------------------------
Confidence            35799999999999999  554    78999873211100                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLE  448 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~  448 (765)
                       .-..+..||-+|.++.     ++++ ++-. +. ..+...||++|++++.|.|..+..+..+-.+.+.....+  ..++
T Consensus       741 -~s~e~LdeAl~masld-----Hpnl~RLLg-vc-~~s~~qlvtq~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~  812 (1177)
T KOG1025|consen  741 -ASIELLDEALRMASLD-----HPNLLRLLG-VC-MLSTLQLVTQLMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMK  812 (1177)
T ss_pred             -hhHHHHHHHHHHhcCC-----CchHHHHhh-hc-ccchHHHHHHhcccchHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence             0012334444444332     1211 1111 11 233477999999999999987776666666666555443  4478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      ++++++++|||+-.-|+||..  ...+++.|||++.-+.+...+..+.    ...--+.+|+=+.+.....++..|++++
T Consensus       813 YLe~qrlVHrdLaaRNVLVks--P~hvkitdfgla~ll~~d~~ey~~~----~gK~pikwmale~i~~~~~thqSDVWsf  886 (1177)
T KOG1025|consen  813 YLEEQRLVHRDLAARNVLVKS--PNHVKITDFGLAKLLAPDEKEYSAP----GGKVPIKWMALESIRIRKYTHQSDVWSF  886 (1177)
T ss_pred             HHHhcchhhhhhhhhheeecC--CCeEEEEecchhhccCccccccccc----ccccCcHHHHHHHhhccCCCchhhhhhh
Confidence            889999999999999999986  6789999999999998876543322    2233456777777788888999999999


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      ...+=+++
T Consensus       887 GVtiWElm  894 (1177)
T KOG1025|consen  887 GVTIWELM  894 (1177)
T ss_pred             hhhHHHHH
Confidence            87665443

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=98.72  E-value=7.6e-08  Score=105.89  Aligned_cols=188  Identities=14%  Similarity=0.161  Sum_probs=104.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHH-HHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIY-DECASVLYQEI  375 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~-~E~~~~l~~El  375 (765)
                      .-+|.|+|..||+|.+  ..+-|||||-.-+                              -+|.+-- +.+-+...+|-
T Consensus       469 hLLGrGGFSEVyKAFDl~EqRYvAvKIHqlN------------------------------K~WrdEKKeNYhKHAcREy  518 (775)
T KOG1151|consen  469 HLLGRGGFSEVYKAFDLTEQRYVAVKIHQLN------------------------------KNWRDEKKENYHKHACREY  518 (775)
T ss_pred             HHhccccHHHHHHhcccchhheeeEeeehhc------------------------------cchhhHhhhhHHHHHHHHH
Confidence            3589999999999998  5889999986221                              1333210 11111222222


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeecc---CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH---HHHHH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEY---TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE---SYLEQ  449 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~---st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~---~~L~q  449 (765)
                      +          +.+.+ +  +-++.+.|.-+   +...+-|.|||+|-.|+-+..  +...--++-|+.++-   ..|.+
T Consensus       519 r----------IHKeL-D--HpRIVKlYDyfslDtdsFCTVLEYceGNDLDFYLK--QhklmSEKEARSIiMQiVnAL~Y  583 (775)
T KOG1151|consen  519 R----------IHKEL-D--HPRIVKLYDYFSLDTDSFCTVLEYCEGNDLDFYLK--QHKLMSEKEARSIIMQIVNALKY  583 (775)
T ss_pred             h----------hhhcc-C--cceeeeeeeeeeeccccceeeeeecCCCchhHHHH--hhhhhhHHHHHHHHHHHHHHHHH
Confidence            2          22222 2  22333444322   345689999999988876532  222112222333222   22333


Q ss_pred             HH--hCCccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHH-HHHHhhcCHHHHHHHHHHcCCCC----C
Q 004254          450 IL--SHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEA-FYGIYEKDADKVLQAMVQMGVLV----P  521 (765)
Q Consensus       450 i~--~~GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l-~~ai~~~D~~~i~~~l~~lG~~~----~  521 (765)
                      +-  ...++|-|+||||||+.+. .-|.|++.|||+.+.++.+.-....-+ +..-..+++-++-++..-.|--.    .
T Consensus       584 LNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsn  663 (775)
T KOG1151|consen  584 LNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISN  663 (775)
T ss_pred             HhccCCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCcccc
Confidence            33  4579999999999998641 126899999999998876543321111 11122455555655544444222    2


Q ss_pred             CCCHHHHHHH
Q 004254          522 TGDTTAVRRT  531 (765)
Q Consensus       522 ~~D~~~l~~~  531 (765)
                      .+|++++...
T Consensus       664 KVDVWSvGVI  673 (775)
T KOG1151|consen  664 KVDVWSVGVI  673 (775)
T ss_pred             ceeeEeeehh
Confidence            4577777654

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.70  E-value=5.7e-09  Score=119.51  Aligned_cols=172  Identities=21%  Similarity=0.251  Sum_probs=111.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      .-+|||++|-||+|+.  +|+.+|||+.+=...+.                            +.        .+.+|+-
T Consensus        21 qrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd----------------------------~~--------~iqqei~   64 (829)
T KOG0576|consen   21 QRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDD----------------------------FS--------GIQQEIG   64 (829)
T ss_pred             eeecCCcccchhhhcccccCchhhheeeeccCCcc----------------------------cc--------cccccee
Confidence            4699999999999999  69999999884222211                            11        1122322


Q ss_pred             HHHHHH--HHHHHHH-hcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHH
Q 004254          377 YTQEAA--NAELFAS-NFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQIL  451 (765)
Q Consensus       377 f~~EA~--Nl~rf~~-~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~--~L~qi~  451 (765)
                      ..+|.+  |+.-+.. ..+              ..+.+++||||.|++|.|+-... ..+...+++...-+.  -++.+|
T Consensus        65 ~~~dc~h~nivay~gsylr--------------~dklwicMEycgggslQdiy~~T-gplselqiayvcRetl~gl~ylh  129 (829)
T KOG0576|consen   65 MLRDCRHPNIVAYFGSYLR--------------RDKLWICMEYCGGGSLQDIYHVT-GPLSELQIAYVCRETLQGLKYLH  129 (829)
T ss_pred             eeecCCCcChHHHHhhhhh--------------hcCcEEEEEecCCCcccceeeec-ccchhHHHHHHHhhhhccchhhh
Confidence            223332  2222111 111              23569999999999999975432 223444554443333  378899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC---CCCCCCCHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG---VLVPTGDTTAV  528 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG---~~~~~~D~~~l  528 (765)
                      ..|-+|||+|-+||++++  .|.+++.|||..+.++...-..      .-..+.+..|++++..++   -.....|.+++
T Consensus       130 s~gk~hRdiKGanilltd--~gDvklaDfgvsaqitati~Kr------ksfiGtpywmapEvaaverkggynqlcdiwa~  201 (829)
T KOG0576|consen  130 SQGKIHRDIKGANILLTD--EGDVKLADFGVSAQITATIAKR------KSFIGTPYWMAPEVAAVERKGGYNQLCDIWAL  201 (829)
T ss_pred             cCCcccccccccceeecc--cCceeecccCchhhhhhhhhhh------hcccCCccccchhHHHHHhccccccccccccc
Confidence            999999999999999997  8999999999999887542211      112467778887776653   34445576665


Q ss_pred             H
Q 004254          529 R  529 (765)
Q Consensus       529 ~  529 (765)
                      .
T Consensus       202 g  202 (829)
T KOG0576|consen  202 G  202 (829)
T ss_pred             c
Confidence            5

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=98.70  E-value=1.2e-08  Score=108.03  Aligned_cols=186  Identities=14%  Similarity=0.080  Sum_probs=121.1

Q ss_pred             CcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          297 DVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       297 d~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      +.+.||.|--|.|-.+..  +|+..|+||.+-.-+                                         .++|
T Consensus        66 s~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds~K-----------------------------------------ARrE  104 (400)
T KOG0604|consen   66 SWQVLGAGINGKVVQCVHKRTQEKFALKVLLDSPK-----------------------------------------ARRE  104 (400)
T ss_pred             hhhhhccccCCceEEEEeccchhhhHHHHHhcCHH-----------------------------------------HHhH
Confidence            447899999999999988  699999998732111                                         1122


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccC---CCeEEEEeecCCCChhhhhhhhhc-CCCHHHHHHHH--HHHHHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRYA--VESYLE  448 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s---t~~vLVMEyieG~~L~d~~~l~~~-g~d~~~ia~~l--i~~~L~  448 (765)
                      +++.--+         -.+..-|.|-.||...-   ....+|||.++|+.|....+-... .+..++.++..  +...+.
T Consensus       105 VeLHw~~---------s~h~~iV~IidVyeNs~~~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~  175 (400)
T KOG0604|consen  105 VELHWMA---------SGHPHIVSIIDVYENSYQGRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVR  175 (400)
T ss_pred             hhhhhhh---------cCCCceEEeehhhhhhccCceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHH
Confidence            2221111         01122244555554221   224789999999998774432222 23444444332  345578


Q ss_pred             HHHhCCccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~  527 (765)
                      ++|..+|-|||+||+|+|+... ++-.++|.|||+++.-....  .+     -.-.-++.+++++.+.-.-.....|+++
T Consensus       176 ~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~--~L-----~TPc~TPyYvaPevlg~eKydkscdmwS  248 (400)
T KOG0604|consen  176 YLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPG--DL-----MTPCFTPYYVAPEVLGPEKYDKSCDMWS  248 (400)
T ss_pred             HHHhcchhhccCChhheeeecCCCCcceEecccccccccCCCc--cc-----cCCcccccccCHHHhCchhcCCCCCccc
Confidence            8999999999999999999752 23469999999998765311  11     0113467888898877666677789999


Q ss_pred             HHHHHHHHHHHH
Q 004254          528 VRRTAQFFLNSF  539 (765)
Q Consensus       528 l~~~~~~~l~~~  539 (765)
                      +...++.++-.|
T Consensus       249 lgVimYIlLCGy  260 (400)
T KOG0604|consen  249 LGVIMYILLCGY  260 (400)
T ss_pred             hhHHHHHhhcCC
Confidence            998888887765

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=98.69  E-value=5.6e-08  Score=110.08  Aligned_cols=180  Identities=21%  Similarity=0.227  Sum_probs=112.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      .|+|.|.||||..|++  +..+|+||...   ++.|-.|-+        +.  ++       ++-.        +..|+.
T Consensus       567 q~lG~GAyGkV~lai~K~n~~eVViK~I~---KeRIL~DtW--------vr--Dr-------kLGt--------Vp~EIq  618 (772)
T KOG1152|consen  567 QPLGEGAYGKVNLAIHKENNYEVVIKMIF---KERILVDTW--------VR--DR-------KLGT--------VPSEIQ  618 (772)
T ss_pred             eeccccccceEEEeeecccceEEEeeehh---hhhhhhhhh--------hc--cc-------ccCc--------cchhHH
Confidence            7999999999999999  47899999762   222222221        11  11       1111        111222


Q ss_pred             HH--HH---HHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeec-CCCChhhhhhhhhcCCC--HHHHHHHHHHHHHH
Q 004254          377 YT--QE---AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYV-PGIKINRIQSLDELGVD--RKRLGRYAVESYLE  448 (765)
Q Consensus       377 f~--~E---A~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyi-eG~~L~d~~~l~~~g~d--~~~ia~~li~~~L~  448 (765)
                      .+  .+   ..|+.++-..|.++             ...+|+||-- +|+.|.|+...... ++  ..++.-..+.+..+
T Consensus       619 Ila~l~~~sH~NIlKlLdfFEdd-------------d~yyl~te~hg~gIDLFd~IE~kp~-m~E~eAk~IFkQV~agi~  684 (772)
T KOG1152|consen  619 ILATLNKHSHENILKLLDFFEDD-------------DYYYLETEVHGEGIDLFDFIEFKPR-MDEPEAKLIFKQVVAGIK  684 (772)
T ss_pred             HHHHhhhcCccchhhhhheeecC-------------CeeEEEecCCCCCcchhhhhhccCc-cchHHHHHHHHHHHhccc
Confidence            11  11   12555555555543             3357788853 57777776654321 22  22333334455577


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTA  527 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~  527 (765)
                      ++|..|++|||+|-+|+.++.  +|-++|||||.+......-    .+.    ..++.++++++++.-. +.....|.++
T Consensus       685 hlh~~~ivhrdikdenvivd~--~g~~klidfgsaa~~ksgp----fd~----f~gtv~~aapevl~g~~y~gk~qdiwa  754 (772)
T KOG1152|consen  685 HLHDQGIVHRDIKDENVIVDS--NGFVKLIDFGSAAYTKSGP----FDV----FVGTVDYAAPEVLGGEKYLGKPQDIWA  754 (772)
T ss_pred             cccccCceecccccccEEEec--CCeEEEeeccchhhhcCCC----cce----eeeeccccchhhhCCCccCCCcchhhh
Confidence            889999999999999999985  8999999999887654321    222    3467888899988653 3334558887


Q ss_pred             HHH
Q 004254          528 VRR  530 (765)
Q Consensus       528 l~~  530 (765)
                      +.-
T Consensus       755 lgi  757 (772)
T KOG1152|consen  755 LGI  757 (772)
T ss_pred             hhh
Confidence            764

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.65  E-value=1.8e-07  Score=95.91  Aligned_cols=105  Identities=22%  Similarity=0.296  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCC------CeEEEEeecCCC-Chhhhhhhh-hcCC-CHHHHHHHHHHHH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTT------PQILTMEYVPGI-KINRIQSLD-ELGV-DRKRLGRYAVESY  446 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st------~~vLVMEyieG~-~L~d~~~l~-~~g~-d~~~ia~~li~~~  446 (765)
                      ...+|.+|+.++.+     .+|.+|+++--...      +.+|+||+++|. +|.++.... .... ....+.. .+..+
T Consensus        57 ra~~E~~~~~~L~~-----~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~~~~~~~~~ll~-~l~~~  130 (206)
T PF06293_consen   57 RAKREWRNLQRLRE-----AGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQLDPSQRRELLR-ALARL  130 (206)
T ss_pred             HHHHHHHHHHHHHH-----cCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcccchhhHHHHHH-HHHHH
Confidence            45678889988876     45778887653222      348999999995 677765321 1111 1223333 34456


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCC---cEEEEeecceeccCh
Q 004254          447 LEQILSHGFFHADPHPGNIAVDDVNGG---RLIFYDFGMMGSISP  488 (765)
Q Consensus       447 L~qi~~~GffHaDpHPGNILV~~~~~g---~l~LiDFGlv~~L~~  488 (765)
                      +..+|..|++|+|++|+|||++.  ++   ++.+|||+-+..-..
T Consensus       131 i~~lH~~gi~H~Dl~~~NILv~~--~~~~~~~~lIDld~~~~~~~  173 (206)
T PF06293_consen  131 IAKLHDAGIYHGDLNPSNILVDP--DDGQYRFYLIDLDRMRFRPS  173 (206)
T ss_pred             HHHHHHCcCCCCCCCcccEEEeC--CCCceeEEEEcchhceeCCC
Confidence            78899999999999999999986  43   799999998886553

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=98.64  E-value=1.7e-07  Score=97.36  Aligned_cols=128  Identities=14%  Similarity=0.099  Sum_probs=83.5

Q ss_pred             CCCeEEEEeecCCCChhhhhh-hh--hcCCCHHHHHHHHHH--HHHHHHHhCC--ccccCCCCCcEEEeecCCCcEEEEe
Q 004254          407 TTPQILTMEYVPGIKINRIQS-LD--ELGVDRKRLGRYAVE--SYLEQILSHG--FFHADPHPGNIAVDDVNGGRLIFYD  479 (765)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~-l~--~~g~d~~~ia~~li~--~~L~qi~~~G--ffHaDpHPGNILV~~~~~g~l~LiD  479 (765)
                      +...+|+..|..-++|.|... ..  +.-++..++......  ..++++|+..  +.|+|+||+||++.+  ++.+++.|
T Consensus        95 ~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~--~~~~vl~D  172 (302)
T KOG2345|consen   95 KHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSD--SGLPVLMD  172 (302)
T ss_pred             ceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecC--CCceEEEe
Confidence            455799999988888877433 22  223556666665444  3489999988  999999999999986  79999999


Q ss_pred             ecceeccChh--hHHHHHHHH-HHHhhcCHHHHHHHHHHc---CCCCCCCCHHHHHHHHHHHH
Q 004254          480 FGMMGSISPN--IREGLLEAF-YGIYEKDADKVLQAMVQM---GVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       480 FGlv~~L~~~--~r~~l~~l~-~ai~~~D~~~i~~~l~~l---G~~~~~~D~~~l~~~~~~~l  536 (765)
                      ||.+...+-.  .+....++= .+--.=+..+=++++...   ..+++.+|++++.-.++.++
T Consensus       173 ~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~m  235 (302)
T KOG2345|consen  173 LGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMM  235 (302)
T ss_pred             ccCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHH
Confidence            9999865432  222221110 010111223334555543   45677889999998776654

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=98.62  E-value=2.7e-08  Score=105.69  Aligned_cols=193  Identities=18%  Similarity=0.201  Sum_probs=111.0

Q ss_pred             hhhhhcccCcccccccceeEEEEEEe-C--C---eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHH
Q 004254          289 LDDVFERFDVEPIAAASLGQVHRARL-K--G---EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (765)
Q Consensus       289 ~eeiF~~fd~~PIgsaSiGQVhrA~l-~--G---~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~  362 (765)
                      ++.+|.+-.-.-||+|.+|.||+|+- +  +   .++|||...-.                         .     |   
T Consensus        20 ve~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~-------------------------k-----d---   66 (438)
T KOG0666|consen   20 VEDLFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGE-------------------------K-----D---   66 (438)
T ss_pred             HHHHHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhcc-------------------------C-----C---
Confidence            34454433345699999999999976 2  2   24555532110                         0     0   


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc----CCCHH
Q 004254          363 IYDECASVLYQEIDYTQEAA--NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL----GVDRK  436 (765)
Q Consensus       363 i~~E~~~~l~~ElDf~~EA~--Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~----g~d~~  436 (765)
                       .+-++.+.-+|+.+.+|.+  |+..+.            +|+-......+|+.||.|- .|..+......    .+.+.
T Consensus        67 -~tGiS~SAcREiaL~REl~h~nvi~Lv------------~Vfl~~d~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~  132 (438)
T KOG0666|consen   67 -GTGISMSACREIALLRELKHPNVISLV------------KVFLSHDKKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRS  132 (438)
T ss_pred             -CCCcCHHHHHHHHHHHHhcCCcchhHH------------HHHhccCceEEEEehhhhh-hHHHHHHHhccchhccCCHH
Confidence             0123344567777777775  444443            3343344556899999885 34444433221    12222


Q ss_pred             HHHHHHHHH--HHHHHHhCCccccCCCCCcEEEee--cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCH------
Q 004254          437 RLGRYAVES--YLEQILSHGFFHADPHPGNIAVDD--VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDA------  506 (765)
Q Consensus       437 ~ia~~li~~--~L~qi~~~GffHaDpHPGNILV~~--~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~------  506 (765)
                      -+-..+...  -++.+|+.=++|||+||.||||..  ++.|++++.|+|+++.+.....        -+...|+      
T Consensus       133 mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plk--------pl~s~d~VVVTiW  204 (438)
T KOG0666|consen  133 MVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIADLGLARLFNNPLK--------PLASLDPVVVTIW  204 (438)
T ss_pred             HHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEeecccHHHHhhcccc--------ccccCCceEEEEE
Confidence            222222222  255667888999999999999985  1238999999999887654322        1122232      


Q ss_pred             HHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          507 DKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       507 ~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ..+-+.++..--.++..|++++.....+++
T Consensus       205 YRAPELLLGa~hYT~AiDvWAiGCIfaElL  234 (438)
T KOG0666|consen  205 YRAPELLLGARHYTKAIDVWAIGCIFAELL  234 (438)
T ss_pred             ecChHHhcccccccchhhhHHHHHHHHHHH
Confidence            112233344445677889999887655554

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.60  E-value=1.4e-07  Score=107.93  Aligned_cols=193  Identities=18%  Similarity=0.143  Sum_probs=119.2

Q ss_pred             CCChhhhhcccCcccccccceeEEEEEEe--CCeEEE---EEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccch
Q 004254          286 GAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVV---VKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDW  360 (765)
Q Consensus       286 G~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VA---VKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~  360 (765)
                      +.++...|-.|++ -||.|++=.||+|-+  +|-+||   ||+.                   .+.+           + 
T Consensus        34 e~~p~gRy~k~~e-vLGrGafKtVYka~De~~giEVAWnqvk~~-------------------d~~q-----------~-   81 (632)
T KOG0584|consen   34 EKDPTGRYLKFDE-VLGRGAFKTVYKAFDEEEGIEVAWNQVKIR-------------------DVTQ-----------S-   81 (632)
T ss_pred             ccCCCCceeehhh-hcccccceeeeeccccccchhhHHHHHhHH-------------------Hhhc-----------C-
Confidence            4556666777765 599999999999998  476665   2211                   0000           0 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCC--eEEEEeecCCCChhhhhhhhhcCCCHHHH
Q 004254          361 VAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTP--QILTMEYVPGIKINRIQSLDELGVDRKRL  438 (765)
Q Consensus       361 ~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~--~vLVMEyieG~~L~d~~~l~~~g~d~~~i  438 (765)
                          .+-.+.+..|+.+      +.    .+++ ++|.--.-+|.....  ..+++|.+.+++|..+..- ....+.+.+
T Consensus        82 ----~~~leR~~~Ev~l------LK----sL~H-~NIirfy~SW~d~~n~~in~iTEL~TSGtLr~Y~kk-~~~vn~kai  145 (632)
T KOG0584|consen   82 ----PEELERLYSEVHL------LK----SLKH-PNIIRFYDSWVDTDNKTINFITELFTSGTLREYRKK-HRRVNIKAI  145 (632)
T ss_pred             ----hHHHHHHHHHHHH------Hc----cCCC-CceeeeeeheecCCCceeeeeeecccCCcHHHHHHH-hccCCHHHH
Confidence                0111233333322      22    2222 222222223333333  5899999999999987532 222343322


Q ss_pred             HHH--HHHHHHHHHHh--CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004254          439 GRY--AVESYLEQILS--HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV  514 (765)
Q Consensus       439 a~~--li~~~L~qi~~--~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~  514 (765)
                      -..  .+.--|+.+|.  -.++|||+|-.||||+. +.|.++|.|.|++..+.....        +-+-++++.|++++.
T Consensus       146 k~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG-~~G~VKIGDLGLAtl~r~s~a--------ksvIGTPEFMAPEmY  216 (632)
T KOG0584|consen  146 KSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNG-NLGEVKIGDLGLATLLRKSHA--------KSVIGTPEFMAPEMY  216 (632)
T ss_pred             HHHHHHHHHHhhhhhcCCCCccccccccceEEEcC-CcCceeecchhHHHHhhcccc--------ceeccCccccChHHH
Confidence            111  11222444454  35999999999999986 679999999999987654432        224689999999999


Q ss_pred             HcCCCCCCCCHHHHHHHHHHHH
Q 004254          515 QMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       515 ~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +-+ +.+.+|+++|.--+.+|.
T Consensus       217 EE~-YnE~VDVYaFGMCmLEMv  237 (632)
T KOG0584|consen  217 EEN-YNELVDVYAFGMCMLEMV  237 (632)
T ss_pred             hhh-cchhhhhhhhhHHHHHHH
Confidence            954 477899999987655554

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.59  E-value=6.7e-07  Score=90.52  Aligned_cols=140  Identities=27%  Similarity=0.391  Sum_probs=81.1

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +|++.|..++||+...++..+++|+-++.  ..                                          .-...
T Consensus         3 ~~l~~G~~n~~~~v~~~~~~~vlK~~~~~--~~------------------------------------------~~~~~   38 (239)
T PF01636_consen    3 RPLSGGFSNRVYRVTTDDGRYVLKFYRPP--DA------------------------------------------AERLR   38 (239)
T ss_dssp             EEEEESSSSEEEEEEETTSEEEEEEESSH--HH------------------------------------------HHHHH
T ss_pred             ccCCCCCeeeEEEEEECCcEEEEEEeCCC--CC------------------------------------------HHHHH
Confidence            68999999999999996689999987554  00                                          01223


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeee-----ccCCCeEEEEeecCCCChhh------hh-----------hhhhc--C--
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFW-----EYTTPQILTMEYVPGIKINR------IQ-----------SLDEL--G--  432 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~-----e~st~~vLVMEyieG~~L~d------~~-----------~l~~~--g--  432 (765)
                      .|+..+..+.+.     .+.+|+++.     ......+++|+|++|.++.+      ..           .+...  .  
T Consensus        39 ~e~~~~~~l~~~-----~~pvP~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~  113 (239)
T PF01636_consen   39 REAAVLRQLAEH-----GIPVPRVLAFDTSDEFNGFPYLLMEYIPGRPLDDELSPEQRPELLRQLGRALAQLHQVPPPFS  113 (239)
T ss_dssp             HHHHHHHHHHHT-----TSBS--EEEEEEETEETSEEEEEEEEESSEEHHHTSTHHHHHHHHHHHHHHHHHHHHSHTTCC
T ss_pred             HHHHHHHHHHhc-----CCCCceEEeecccccccccceEEEEEeccccccccccccccccccccchhhhhhccccccccc
Confidence            455555555542     237888887     22334589999999998877      00           01111  0  


Q ss_pred             -CC--H--------HH------------------HHHHHHHHHHHHHH---hCCccccCCCCCcEEEeecCCCcEEEEee
Q 004254          433 -VD--R--------KR------------------LGRYAVESYLEQIL---SHGFFHADPHPGNIAVDDVNGGRLIFYDF  480 (765)
Q Consensus       433 -~d--~--------~~------------------ia~~li~~~L~qi~---~~GffHaDpHPGNILV~~~~~g~l~LiDF  480 (765)
                       ..  .        ..                  +...++..+.....   ..+++|+|+||+||++++ .++++.++||
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HgD~~~~Nil~~~-~~~~i~iID~  192 (239)
T PF01636_consen  114 PFADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLLQELEALLPKPLPPVLIHGDLHPGNILVDP-SDGRIGIIDF  192 (239)
T ss_dssp             CHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCSCEEEE-SS-SGGGEEEES-STTEEEE--G
T ss_pred             ccccccccccccccccccccccccchhhhhhhHHHHHHHHHHHHhhhccCCCcEEEEeccccccceeee-ccceeEEEec
Confidence             00  0        00                  00001111111111   356999999999999983 3677899999


Q ss_pred             cceeccCh
Q 004254          481 GMMGSISP  488 (765)
Q Consensus       481 Glv~~L~~  488 (765)
                      +.++.-++
T Consensus       193 e~a~~~~~  200 (239)
T PF01636_consen  193 EDAGWGDP  200 (239)
T ss_dssp             TT-EEEET
T ss_pred             ccceECCH
Confidence            99887655

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=98.55  E-value=1.3e-07  Score=99.09  Aligned_cols=120  Identities=18%  Similarity=0.222  Sum_probs=75.0

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceecc
Q 004254          407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  486 (765)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L  486 (765)
                      ++-.|.||||++-+.|..-......|....+.....+.+.+..+|..+++|||+|.+||||-+.+.-+++|+|||.....
T Consensus        94 ~d~YvF~qE~aP~gdL~snv~~~GigE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~  173 (378)
T KOG1345|consen   94 SDAYVFVQEFAPRGDLRSNVEAAGIGEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKV  173 (378)
T ss_pred             CceEEEeeccCccchhhhhcCcccccHHHHHHHHHHHHHHHHHhhccchhhcccccceEEEecCCccEEEeeeccccccc
Confidence            34568999999988887643222223333333344455668889999999999999999998755679999999998876


Q ss_pred             ChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHH
Q 004254          487 SPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRT  531 (765)
Q Consensus       487 ~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~~  531 (765)
                      +....  +.   -....-.+..+.+.+.+-. ...|..|..+|.-.
T Consensus       174 g~tV~--~~---~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi  214 (378)
T KOG1345|consen  174 GTTVK--YL---EYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGII  214 (378)
T ss_pred             Cceeh--hh---hhhcccCCcHHHhhccccceEecccccchheeee
Confidence            54321  11   1111222333333333222 23466788877643

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=98.55  E-value=3.9e-08  Score=104.97  Aligned_cols=129  Identities=18%  Similarity=0.200  Sum_probs=88.3

Q ss_pred             ccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhCCccccCCCCCcEEEeecCCC
Q 004254          396 YVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQILSHGFFHADPHPGNIAVDDVNGG  473 (765)
Q Consensus       396 ~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~--~L~qi~~~GffHaDpHPGNILV~~~~~g  473 (765)
                      .+..|.-..+.-.+.++|||++++- +..+..   ...|.+.+.....+.  ..+.+|..||+|||+||.||++..  +.
T Consensus        82 n~ftP~~~l~~~~e~y~v~e~m~~n-l~~vi~---~elDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~--~~  155 (369)
T KOG0665|consen   82 NVFTPQKTLEEFQEVYLVMELMDAN-LCQVIL---MELDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNS--DC  155 (369)
T ss_pred             eccCccccHHHHHhHHHHHHhhhhH-HHHHHH---HhcchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecc--hh
Confidence            3445554444445679999999863 444332   445666666655543  478899999999999999999986  88


Q ss_pred             cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004254          474 RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       474 ~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l~  537 (765)
                      .++++|||++..-+..++.  ...    +-.-+....+..+.+| ..+.+|++++.-...+++.
T Consensus       156 ~lKi~dfg~ar~e~~~~~m--tpy----VvtRyyrapevil~~~-~ke~vdiwSvGci~gEli~  212 (369)
T KOG0665|consen  156 TLKILDFGLARTEDTDFMM--TPY----VVTRYYRAPEVILGMG-YKENVDIWSVGCIMGELIL  212 (369)
T ss_pred             heeeccchhhcccCccccc--Cch----hheeeccCchheeccC-CcccchhhhhhhHHHHHhh
Confidence            9999999999987665321  111    1122334456667788 6778899988876666554

>PRK10593 hypothetical protein; Provisional

Probab=98.53  E-value=4.1e-06  Score=90.82  Aligned_cols=94  Identities=20%  Similarity=0.222  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCC
Q 004254          275 ETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSD  354 (765)
Q Consensus       275 ~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~  354 (765)
                      +++++.+.+.+|..+.      +.++||.|.+++||+-...+..++||+.+.....                        
T Consensus         2 ~~~~~~~~~~~~~~~~------~~~~i~~G~~~~vy~~~~~~~~~~~k~~~~~~~~------------------------   51 (297)
T PRK10593          2 EQLRAELSHLLGEKLS------RVECISEQPYAALWALYDSQGNPMPLMARSFSTP------------------------   51 (297)
T ss_pred             hHHHHHHHHHhchhhh------eeeecCCccceeEEEEEcCCCCEEEEEecccccc------------------------
Confidence            3566677777775333      2379999999999999885446888986331110                        


Q ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeecc-----CCCeEEEEeecCCCCh
Q 004254          355 GAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY-----TTPQILTMEYVPGIKI  422 (765)
Q Consensus       355 ~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~-----st~~vLVMEyieG~~L  422 (765)
                                          -.|..|+.+++.+++.    ..|.||+|+...     .+..+|||||++|.++
T Consensus        52 --------------------~~~~~Ea~~L~~L~~~----~~vpVP~V~~~~~~~~~~g~~~LVmE~i~G~~~  100 (297)
T PRK10593         52 --------------------GVAQQEAWKLSMLARS----GTVRMPTVYGVMTHEQSPGPDVLLLERLRGVSV  100 (297)
T ss_pred             --------------------hHHHHHHHHHHHHccC----CCCCcCcEEEEeccCCcCCCeEEEEeccCCEec
Confidence                                1356788888888642    358999999522     3568999999999876

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=98.51  E-value=9.8e-07  Score=90.17  Aligned_cols=183  Identities=18%  Similarity=0.188  Sum_probs=110.0

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      ..+|.|++|+||.|... ..+++|+..+......                                       .....|.
T Consensus         6 ~~l~~g~~~~v~~~~~~-~~~~~k~~~~~~~~~~---------------------------------------~~~~~~~   45 (384)
T COG0515           6 RKLGEGSFGEVYLARDR-KLVALKVLAKKLESKS---------------------------------------KEVERFL   45 (384)
T ss_pred             EeecCCCCeEEEEEEec-cEEEEEeechhhccch---------------------------------------hHHHHHH
Confidence            46889999999999998 8899998855443221                                       0111233


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccC--CCeEEEEeecCCCChhhhhhhhhc--CCCHHHHHHHHHH--HHHHHHHh
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKINRIQSLDEL--GVDRKRLGRYAVE--SYLEQILS  452 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s--t~~vLVMEyieG~~L~d~~~l~~~--g~d~~~ia~~li~--~~L~qi~~  452 (765)
                      +|..-+..    +.+.+  .+...+..+.  ...+++|+|+.|..+.++......  ............+  ..+..+|.
T Consensus        46 ~e~~~~~~----~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~  119 (384)
T COG0515          46 REIQILAS----LNHPP--NIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHS  119 (384)
T ss_pred             HHHHHHHH----ccCCc--ceeeEEEEEecCCEEEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHh
Confidence            33332222    22221  1222222222  225999999999999865432211  2333333322222  22568999


Q ss_pred             CCccccCCCCCcEEEeecCCC-cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc---CCCCCCCCHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGG-RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM---GVLVPTGDTTAV  528 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g-~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l---G~~~~~~D~~~l  528 (765)
                      .|++|+|++|.||+++.  .+ .++++|||++..+.................+...++.++....   .......|.+++
T Consensus       120 ~~~~hrd~kp~nil~~~--~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~  197 (384)
T COG0515         120 KGIIHRDIKPENILLDR--DGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSL  197 (384)
T ss_pred             CCeeccCCCHHHeeecC--CCCeEEEeccCcceecCCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHH
Confidence            99999999999999985  55 7999999999866544321110011222345666777777765   456667788766


Q ss_pred             H
Q 004254          529 R  529 (765)
Q Consensus       529 ~  529 (765)
                      .
T Consensus       198 g  198 (384)
T COG0515         198 G  198 (384)
T ss_pred             H
Confidence            5

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=98.51  E-value=4.2e-07  Score=103.75  Aligned_cols=184  Identities=18%  Similarity=0.182  Sum_probs=120.0

Q ss_pred             ccccccceeEEEEEEe----CCe--EEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL----KGE--EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l----~G~--~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +.||.|-||-||.|+.    +|+  .||||.-+.+..-.                              .          
T Consensus       395 r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d------------------------------~----------  434 (974)
T KOG4257|consen  395 RLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPD------------------------------D----------  434 (974)
T ss_pred             HhhcCCcccceeeeEecccccCcceeeeeehhccCCChh------------------------------h----------
Confidence            4699999999999998    254  58888664332111                              0          


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQI  450 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi  450 (765)
                      .| .|..||--|+.|    .+..-|..--+..  ....|+|||.++-+.|..+.+.....++...+.-.  .+...+.++
T Consensus       435 te-kflqEa~iMrnf----dHphIikLIGv~~--e~P~WivmEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYL  507 (974)
T KOG4257|consen  435 TE-KFLQEASIMRNF----DHPHIIKLIGVCV--EQPMWIVMELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAYL  507 (974)
T ss_pred             HH-HHHHHHHHHHhC----CCcchhheeeeee--ccceeEEEecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence            11 467777666555    2222222222221  24569999999999998876655544444333322  233447778


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      +...|+|||+-.-||||..  ...++|.|||+.+.++++.-..-.     ...--..+|+++-+..-..+...|++-|..
T Consensus       508 eSkrfVHRDIAaRNiLVsS--p~CVKLaDFGLSR~~ed~~yYkaS-----~~kLPIKWmaPESINfRrFTtASDVWMFgV  580 (974)
T KOG4257|consen  508 ESKRFVHRDIAARNILVSS--PQCVKLADFGLSRYLEDDAYYKAS-----RGKLPIKWMAPESINFRRFTTASDVWMFGV  580 (974)
T ss_pred             HhhchhhhhhhhhheeecC--cceeeecccchhhhccccchhhcc-----ccccceeecCccccchhcccchhhHHHHHH
Confidence            8999999999999999985  568999999999999875432111     112245667777777766677778877775


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      -+=+++
T Consensus       581 CmWEIl  586 (974)
T KOG4257|consen  581 CMWEIL  586 (974)
T ss_pred             HHHHHH
Confidence            544443

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.51  E-value=5.8e-07  Score=93.63  Aligned_cols=136  Identities=18%  Similarity=0.219  Sum_probs=82.0

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +||++|.-+-||+.  .|..+++|+.+|+....                                            +..
T Consensus         7 ~~i~~G~t~~~y~~--~~~~~VlR~~~~~~~~~--------------------------------------------~i~   40 (226)
T TIGR02172         7 TQTGEGGNGESYTH--KTGKWMLKLYNPGFDKE--------------------------------------------TIK   40 (226)
T ss_pred             eeecCCCCcceeEe--cCCCEEEEeCCCCCCHH--------------------------------------------HHH
Confidence            79999999999984  36678899886644211                                            124


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeec--cCCCeEEEEeecCCCC-hhhhh---------------h----hhhc---CC
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIK-INRIQ---------------S----LDEL---GV  433 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e--~st~~vLVMEyieG~~-L~d~~---------------~----l~~~---g~  433 (765)
                      +|++.+..+..     ..+.+|+++.-  ......++|||++|.+ +.+..               .    +...   +.
T Consensus        41 ~E~~~l~~l~~-----~glpvP~~~~~~~~~~~~glv~e~i~G~~~~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~~~~  115 (226)
T TIGR02172        41 REFDASRKVFS-----LGIPTPHPFDLVEDGGRLGLIYELIVGKRSFSRIISDNPSRLEEIAKIFAEMAKKLHSTKCDTS  115 (226)
T ss_pred             HHHHHHHHHHH-----cCCCCCceEEEEecCCeeeeeeeecCCccchhhhhcCCHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            56666666653     34778888853  4455688999999974 11100               0    1111   11


Q ss_pred             CHHHHHH-----------------HHHHHHHHHH-HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004254          434 DRKRLGR-----------------YAVESYLEQI-LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (765)
Q Consensus       434 d~~~ia~-----------------~li~~~L~qi-~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (765)
                      .......                 ..+..++..+ -...++|+|+|||||++++  ++ +.+|||+.++.=++
T Consensus       116 ~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~HgD~~~~Nii~~~--~~-~~iIDwe~a~~Gdp  185 (226)
T TIGR02172       116 TFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTSTCLHGDFQIGNLITSG--KG-TYWIDLGDFGYGNP  185 (226)
T ss_pred             cHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCceEecCCCCCcEEEcC--CC-cEEEechhcCcCCH
Confidence            1000000                 0011111111 0245789999999999985  55 99999999886554

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.48  E-value=6.9e-06  Score=85.56  Aligned_cols=164  Identities=23%  Similarity=0.268  Sum_probs=94.4

Q ss_pred             ccccc-ceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAA-SLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       300 PIgsa-SiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      ||..| |-++||+...++..++||+..+.-.                                             -++.
T Consensus         5 ~~~~g~~~~~v~~~~~~~~~~~vk~~~~~~~---------------------------------------------~~~~   39 (244)
T cd05150           5 RVTEGQSGATVYRLDGKNPGLYLKIAPSGPT---------------------------------------------YELE   39 (244)
T ss_pred             ecCCCCCcCeEEEEcCCCCcEEEEecCCCcc---------------------------------------------cchH
Confidence            44444 4499999988778999998733210                                             1234


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCC--CeEEEEeecCCCChhhhhh-----------------hhhc-----CCC
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTT--PQILTMEYVPGIKINRIQS-----------------LDEL-----GVD  434 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st--~~vLVMEyieG~~L~d~~~-----------------l~~~-----g~d  434 (765)
                      .|++.+..+.+.      +.+|+++.....  ..+++|||++|.++.+...                 +...     ...
T Consensus        40 ~E~~~l~~l~~~------~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~~~~~~~~~~~~~l~~~l~~lH~i~~~~~~~~  113 (244)
T cd05150          40 REAERLRWLAGK------LPVPEVIDYGSDDGRAWLLTSAVPGVPAAALWEELEPERLVDALAEALRRLHALPVADCPFD  113 (244)
T ss_pred             HHHHHHHHHHhc------CCCCeEEEEEecCCccEEEEEeeCCccHhHhhcccCHHHHHHHHHHHHHHHhcCCcccCCcc
Confidence            566766666542      679999874433  4699999999998775320                 0010     000


Q ss_pred             H---HHHHH--HH-------------------HHHHHHHHH-------hCCccccCCCCCcEEEeecCCCcEEEEeecce
Q 004254          435 R---KRLGR--YA-------------------VESYLEQIL-------SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM  483 (765)
Q Consensus       435 ~---~~ia~--~l-------------------i~~~L~qi~-------~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv  483 (765)
                      .   ..+..  ..                   ....+..+.       ...++|+|+||+||++++  ++.+.+|||+.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~~--~~~~~iIDwe~a  191 (244)
T cd05150         114 RRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAELEATRPAEEDLVVTHGDACLPNIIVDP--GKFSGFIDLGRL  191 (244)
T ss_pred             hhHHHHHHHHHHHHhcCCcChhhCcHhhcCCCHHHHHHHHHhhCCCcCceEEECCCCCCccEEEeC--CcEEEEEEcccc
Confidence            0   00000  00                   111122221       245899999999999985  556789999999


Q ss_pred             eccChhhHHHHHHHHHHHhhc--CHHHHHHHHHHcCC
Q 004254          484 GSISPNIREGLLEAFYGIYEK--DADKVLQAMVQMGV  518 (765)
Q Consensus       484 ~~L~~~~r~~l~~l~~ai~~~--D~~~i~~~l~~lG~  518 (765)
                      +.-++..  .++-++......  +.......+...|.
T Consensus       192 ~~gdp~~--Dla~~~~~~~~~~~~~~~~~~f~~~Y~~  226 (244)
T cd05150         192 GVADRYQ--DLALAVRSLRENLGGEEYAARFLDRYGI  226 (244)
T ss_pred             ccccHHH--HHHHHHHHhhhhcCChHHHHHHHHHcCC
Confidence            8665532  233333222221  34555555555554

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.48  E-value=2.3e-08  Score=103.66  Aligned_cols=185  Identities=16%  Similarity=0.213  Sum_probs=102.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ..||+|.||.|++|+.  .|+.||+|..                    +++.   +-.+           |-..-.+|++
T Consensus        23 ~kigqGtfgeVFkAr~~n~~kkvalkkv--------------------lmen---eKeG-----------fpitalreik   68 (376)
T KOG0669|consen   23 AKIGQGTFGEVFKARSKNTGKKVALKKV--------------------LMEN---EKEG-----------FPITALREIK   68 (376)
T ss_pred             HhcCCchHHHHHHHhhcCccchhHHHHH--------------------HHhc---cccC-----------CcHHHHHHHH
Confidence            5799999999999998  5888998844                    1100   0000           1111223444


Q ss_pred             HHHH-----HHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHH
Q 004254          377 YTQE-----AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQ  449 (765)
Q Consensus       377 f~~E-----A~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~q  449 (765)
                      ...-     ..|+..+.+.+..      |..  .+.+..+|||.+|+-- |.-+.......++...|-..  .+-.-+..
T Consensus        69 iL~~lkHenv~nliEic~tk~T------p~~--r~r~t~ylVf~~cehD-LaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~  139 (376)
T KOG0669|consen   69 ILQLLKHENVVNLIEICRTKAT------PTN--RDRATFYLVFDFCEHD-LAGLLSNRKVRFSLSEIKKVMKGLMNGLYY  139 (376)
T ss_pred             HHHHhcchhHHHHHHHHhhccC------Ccc--cccceeeeeHHHhhhh-HHHHhcCccccccHHHHHHHHHHHHHHHHH
Confidence            4332     1244444443332      111  1234469999999741 22221111122333333222  23344778


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhH---HHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR---EGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r---~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~  526 (765)
                      ||+..++|||.||.|+||+.  +|.++|.|||+++.++....   ..|..-+..+..+.++.+    +.---..+..|++
T Consensus       140 iHr~kilHRDmKaaNvLIt~--dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEll----LG~r~yg~~iDiW  213 (376)
T KOG0669|consen  140 IHRNKILHRDMKAANVLITK--DGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELL----LGDREYGPPIDIW  213 (376)
T ss_pred             HHHhhHHhhcccHhhEEEcC--CceEEeeccccccceecccccCCCCcccceeeeecCCHHHh----hcccccCCcchhH
Confidence            99999999999999999986  89999999999987754321   113222333333333322    2222335667777


Q ss_pred             HHHHHH
Q 004254          527 AVRRTA  532 (765)
Q Consensus       527 ~l~~~~  532 (765)
                      ...-.+
T Consensus       214 gAgCim  219 (376)
T KOG0669|consen  214 GAGCIM  219 (376)
T ss_pred             hHHHHH
Confidence            655433

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=98.47  E-value=2.8e-06  Score=93.10  Aligned_cols=187  Identities=17%  Similarity=0.170  Sum_probs=122.9

Q ss_pred             cccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       300 PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      .|..|--|-||.|+- +|..+||||-+..|----.+|-.+    ..-+ ++.  ....+-++..++.-++         .
T Consensus       151 CiSTGKEANVYHat~~dG~~~AIKIYKTSILvFKDRdRYV----~GEf-RFR--hgyck~NPRKMVk~WA---------E  214 (520)
T KOG2270|consen  151 CISTGKEANVYHATEEDGSEFAIKIYKTSILVFKDRDRYV----SGEF-RFR--HGYCKHNPRKMVKTWA---------E  214 (520)
T ss_pred             ccccCccceeEeeecCCCceEEEEEEeeeEEEEechhhhc----ccee-eee--cccccCCcHHHHHHHH---------H
Confidence            688899999999999 899999999877664332222211    0000 000  1122346677777665         3


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHH---HHHHHHHHHHHHHHhCCc
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR---LGRYAVESYLEQILSHGF  455 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~---ia~~li~~~L~qi~~~Gf  455 (765)
                      .|.+|+.|++.     .+|.+|+++  +-..+||||+|+.+-.. ....+....+.+.+   +...++...-.+....++
T Consensus       215 KE~RNLkRl~~-----aGIP~PePI--lLk~hVLVM~FlGrdgw-~aPkLKd~~ls~~ka~~~Y~~~v~~MR~lY~~c~L  286 (520)
T KOG2270|consen  215 KEMRNLKRLNN-----AGIPCPEPI--LLKNHVLVMEFLGRDGW-AAPKLKDASLSTSKARELYQQCVRIMRRLYQKCRL  286 (520)
T ss_pred             HHHHHHHHHHh-----cCCCCCCce--eeecceEeeeeccCCCC-cCcccccccCChHHHHHHHHHHHHHHHHHHHHhce
Confidence            58899999865     468889888  56778999999964211 11122333333332   222222222223346899


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~  520 (765)
                      +|+|+.--|+|+.   +|++.+||-+.....+......|+       ..|...+-..+..+|+..
T Consensus       287 VHADLSEfN~Lyh---dG~lyiIDVSQSVE~DHP~aldFL-------RmDc~NVn~FF~r~gv~v  341 (520)
T KOG2270|consen  287 VHADLSEFNLLYH---DGKLYIIDVSQSVEHDHPHALDFL-------RMDCNNVNDFFRRLGVAV  341 (520)
T ss_pred             eccchhhhhheEE---CCEEEEEEccccccCCChhHHHHH-------HHHHHHHHHHHHHcCCee
Confidence            9999999999997   799999999999888877655443       347777888888888643

>PRK05231 homoserine kinase; Provisional

Probab=98.40  E-value=4.9e-06  Score=90.25  Aligned_cols=50  Identities=8%  Similarity=0.090  Sum_probs=35.0

Q ss_pred             CCCChHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEeCCeEEEEEEec
Q 004254          270 PPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQR  325 (765)
Q Consensus       270 pp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqr  325 (765)
                      .+.+.+++..++ +.+|.  .++   .+-++++.|...++|+...++..+++|+.+
T Consensus         5 t~ls~~~l~~~l-~~y~~--~~~---~~~~~l~~G~~n~~y~v~t~~g~~vLK~~~   54 (319)
T PRK05231          5 TDVSDDELAAFL-APYDL--GEL---LSLKGIAEGIENSNFFLTTTQGEYVLTLFE   54 (319)
T ss_pred             ccCCHHHHHHHH-HhcCC--chh---hccchhccccccceEEEEeCCCcEEEEEec
Confidence            456677777777 55664  111   123689999999999998855578999763

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=98.38  E-value=5.5e-07  Score=102.56  Aligned_cols=179  Identities=14%  Similarity=0.075  Sum_probs=113.0

Q ss_pred             ccccccceeEEEEEEeC--CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~--G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ..+|-|.+|.||.|+|+  .-.||||.++-+.-+                                 ++          .
T Consensus       273 hKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMe---------------------------------ve----------E  309 (1157)
T KOG4278|consen  273 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---------------------------------VE----------E  309 (1157)
T ss_pred             eccCCCcccceeeeeeeccceeeehhhhhhcchh---------------------------------HH----------H
Confidence            57999999999999993  788999966322100                                 11          3


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHH--HHHHHHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRL--GRYAVESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~i--a~~li~~~L~qi~~~  453 (765)
                      |..||..|..+.+     +++.----++...-..|+++|||.-+.|-|+..-.. .....--+  +...+...+.++-..
T Consensus       310 FLkEAAvMKeikH-----pNLVqLLGVCT~EpPFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkk  384 (1157)
T KOG4278|consen  310 FLKEAAVMKEIKH-----PNLVQLLGVCTHEPPFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKK  384 (1157)
T ss_pred             HHHHHHHHHhhcC-----ccHHHHhhhhccCCCeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHh
Confidence            4555555544321     111111111112234689999999888877653221 11121111  122344557777789


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      +|+|+|+-.-|.||..  +.-+++.|||+++.++.++...     .|-+.--..+.+++-+.....+-..|+++|...+
T Consensus       385 nFIHRDLAARNCLVgE--nhiVKvADFGLsRlMtgDTYTA-----HAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLL  456 (1157)
T KOG4278|consen  385 NFIHRDLAARNCLVGE--NHIVKVADFGLSRLMTGDTYTA-----HAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLL  456 (1157)
T ss_pred             hhhhhhhhhhhccccc--cceEEeeccchhhhhcCCceec-----ccCccCcccccCcccccccccccchhhHHHHHHH
Confidence            9999999999999986  7789999999999887765432     2223334455566666666666778999887543

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=98.35  E-value=3.4e-06  Score=100.07  Aligned_cols=180  Identities=14%  Similarity=0.074  Sum_probs=113.5

Q ss_pred             cccccceeEEEEEEeC---------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       300 PIgsaSiGQVhrA~l~---------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      ++|+|.||||++|.+.         ...||||..+....+.-                                   .+ 
T Consensus       303 ~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~-----------------------------------~~-  346 (609)
T KOG0200|consen  303 YLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSE-----------------------------------KK-  346 (609)
T ss_pred             eeecccccceEeEEEeecccccccceEEEEEEecccccCcHH-----------------------------------HH-
Confidence            9999999999999972         24799998866554310                                   01 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccc-cceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCC
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYVK-VPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVD  434 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V~-vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d  434 (765)
                           ++..|...+....    .++++. ..-.... .+..++|+||++.+.|.++.....               ..+.
T Consensus       347 -----~~~~El~~m~~~g----~H~niv~llG~~t~-~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~  416 (609)
T KOG0200|consen  347 -----DLMSELNVLKELG----KHPNIVNLLGACTQ-DGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALT  416 (609)
T ss_pred             -----HHHHHHHHHHHhc----CCcchhhheeeecc-CCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcC
Confidence                 2233333333322    122222 2221212 556899999999999988754433               1134


Q ss_pred             HHHHHHHHHHH--HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhc-----CHH
Q 004254          435 RKRLGRYAVES--YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEK-----DAD  507 (765)
Q Consensus       435 ~~~ia~~li~~--~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~-----D~~  507 (765)
                      ...+.....+.  -++.+....++|||+-.-|||+..  +..+++.|||+++...+..-..        ..+     -..
T Consensus       417 ~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNVLi~~--~~~~kIaDFGlar~~~~~~~y~--------~~~~~~~LP~k  486 (609)
T KOG0200|consen  417 TKDLLSFAYQIANGMEYLASVPCVHRDLAARNVLITK--NKVIKIADFGLARDHYNKDYYR--------TKSSAGTLPVK  486 (609)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCccchhhhhhhEEecC--CCEEEEccccceeccCCCCceE--------ecCCCCcccee
Confidence            44444433333  366677889999999999999986  6789999999999654432110        011     123


Q ss_pred             HHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          508 KVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       508 ~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      .|+++-+.-...+...|++++...+.++
T Consensus       487 WmApEsl~~~~ft~kSDVWSfGI~L~Ei  514 (609)
T KOG0200|consen  487 WMAPESLFDRVFTSKSDVWSFGILLWEI  514 (609)
T ss_pred             ecCHHHhccCcccccchhhHHHHHHHHH
Confidence            6666666667777888999998755443

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=98.31  E-value=1.5e-05  Score=82.83  Aligned_cols=36  Identities=39%  Similarity=0.670  Sum_probs=28.3

Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (765)
                      ..+++|+|+||+||++++  ++...+|||+.+..=++.
T Consensus       163 ~~~l~HGD~~~~Nvlv~~--~~i~giIDw~~a~~gDp~  198 (235)
T cd05155         163 PPVWFHGDLAPGNLLVQD--GRLSAVIDFGCLGVGDPA  198 (235)
T ss_pred             CceEEeCCCCCCcEEEEC--CCEEEEEeCcccCcCChH
Confidence            346899999999999973  333569999998876653

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=98.27  E-value=4.5e-05  Score=86.01  Aligned_cols=110  Identities=22%  Similarity=0.233  Sum_probs=67.8

Q ss_pred             CCChHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEe-CC-eEEEEEEecCCchhhHHHHHHHHHHHHHHHhh
Q 004254          271 PFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KG-EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQK  348 (765)
Q Consensus       271 p~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l-~G-~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~  348 (765)
                      ++..+.+...+.+..|.-  +--+..+.++++.|.+..||+..+ +| +.|+||...|.++..                 
T Consensus         6 ~l~~~~v~~yl~~~~~~~--~~~~~~~~~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~-----------------   66 (401)
T PRK09550          6 TLTEEDAVEYAALKLGLF--DPKALLTAREIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVV-----------------   66 (401)
T ss_pred             eCCHhHHHHHHHHhcCCC--CCcccceeeEcCCCceEEEEEEEeCCCCeEEEEEecCcccccc-----------------
Confidence            444555555554333310  011234457999999999999999 56 599999876654311                 


Q ss_pred             cCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCC
Q 004254          349 IDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIK  421 (765)
Q Consensus       349 ~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~  421 (765)
                        +.      .|.--         .| .+..|++.+..+.+.    ....+|+||.-.....++||||+++.+
T Consensus        67 --g~------~wpl~---------~e-R~~~Eae~L~~l~~~----~p~~VPkV~~~D~~~~~lVME~L~~~~  117 (401)
T PRK09550         67 --GE------SWPLT---------LD-RARIEAEALKIQAKY----VPDLVPKVYHYDEELAVTVMEDLSDHK  117 (401)
T ss_pred             --cc------ccccc---------HH-HHHHHHHHHHHHHhh----CCCCCCeEEEECCCCCEEEEecCCCcc
Confidence              00      01100         01 234566666666543    335799999877777899999999855

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=98.26  E-value=9.9e-06  Score=81.15  Aligned_cols=125  Identities=24%  Similarity=0.391  Sum_probs=88.3

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      .-+|.|..+.||.+.+.|.+||+|+||++....                                            ++.
T Consensus        28 ~~L~KG~~s~Vyl~~~~~~~~a~Kvrr~ds~r~--------------------------------------------~l~   63 (201)
T COG2112          28 KELAKGTTSVVYLGEWRGGEVALKVRRRDSPRR--------------------------------------------NLE   63 (201)
T ss_pred             hhhhcccccEEEEeeccCceEEEEEecCCcchh--------------------------------------------hHH
Confidence            458999999999999999999999998865322                                            334


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHA  458 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~GffHa  458 (765)
                      .||+-++.+...      -..|++|  +-++.++.|||++|.+|.++..    +.+++.+...+=.+|  -+=..|+-|.
T Consensus        64 kEakiLeil~g~------~~~p~vy--~yg~~~i~me~i~G~~L~~~~~----~~~rk~l~~vlE~a~--~LD~~GI~H~  129 (201)
T COG2112          64 KEAKILEILAGE------GVTPEVY--FYGEDFIRMEYIDGRPLGKLEI----GGDRKHLLRVLEKAY--KLDRLGIEHG  129 (201)
T ss_pred             HHHHHHHHhhhc------CCCceEE--EechhhhhhhhhcCcchhhhhh----cccHHHHHHHHHHHH--HHHHhccchh
Confidence            566656555432      2368888  3567778899999999988643    125555544433322  1235799999


Q ss_pred             CCCC--CcEEEeecCCCcEEEEeeccee
Q 004254          459 DPHP--GNIAVDDVNGGRLIFYDFGMMG  484 (765)
Q Consensus       459 DpHP--GNILV~~~~~g~l~LiDFGlv~  484 (765)
                      .+|-  -||++.   ++++.+|||--+.
T Consensus       130 El~~~~k~vlv~---~~~~~iIDFd~At  154 (201)
T COG2112         130 ELSRPWKNVLVN---DRDVYIIDFDSAT  154 (201)
T ss_pred             hhcCCceeEEec---CCcEEEEEccchh
Confidence            9984  366665   5699999998776

>TIGR02721 ycfN_thiK thiamine kinase

Probab=98.19  E-value=5.1e-05  Score=79.89  Aligned_cols=138  Identities=20%  Similarity=0.232  Sum_probs=84.6

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      .++..|-..++|+...+|..+++|+..++....                                          .+|..
T Consensus         2 ~~~~~G~tn~~y~~~~~~~~~vlR~~~~~~~~~------------------------------------------~~~r~   39 (256)
T TIGR02721         2 QTLSGGLTNRSWRIEHPGISFVWRPQSPVCKAL------------------------------------------GVDRQ   39 (256)
T ss_pred             CcCCCcCcCCeEEEEeCCccEEEeeCCcccccc------------------------------------------cCcHH
Confidence            367788889999998888899999764432110                                          12445


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhh--------hh-------hhhc---C--CCHH-H
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRI--------QS-------LDEL---G--VDRK-R  437 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~--------~~-------l~~~---g--~d~~-~  437 (765)
                      +|.+++..+.+.     ++ .|+++..  ...+++|||++|.+++..        ..       +...   +  .+.. .
T Consensus        40 ~E~~~l~~l~~~-----g~-~P~~i~~--~~~~~v~e~i~G~~~~~~~~~~~~~~~~la~~l~~lH~~~~~~~~~~~~~~  111 (256)
T TIGR02721        40 REYQILQALSAL-----GL-APKPILV--NEHWLLVEWLEGEVITLDQFVALDLLLELAALLHQLHSQPRFGYPLSLKAR  111 (256)
T ss_pred             HHHHHHHHHHhc-----CC-CCceEEE--eCCEEEEEeccCcccccccccCchhHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence            566666666541     23 5888854  346899999999887531        00       1111   1  1111 1


Q ss_pred             HHHH-----------HHHHHHHHHH--------hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004254          438 LGRY-----------AVESYLEQIL--------SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (765)
Q Consensus       438 ia~~-----------li~~~L~qi~--------~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (765)
                      +...           .+...++.+.        ...+.|+|+|||||++++  ++ +.+|||..++.=++.
T Consensus       112 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~H~Dl~~~Nil~~~--~~-~~lIDwE~a~~gdp~  179 (256)
T TIGR02721       112 IAHYWLQIDPARRTPEWLRLYKQFRSAPEPAPLPLAPLHMDVHAYNLVVTP--QG-LKLIDWEYASDGDIA  179 (256)
T ss_pred             HHHHHHhcccccCChHHHHHHHHHHhccCCCCCCCeeecCCCCcCcEEEeC--CC-CEEEeccccCcCCHH
Confidence            1110           0111122222        236899999999999984  44 899999999887764

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PLN02756 S-methyl-5-thioribose kinase

Probab=98.18  E-value=4.9e-05  Score=85.70  Aligned_cols=109  Identities=15%  Similarity=0.234  Sum_probs=67.4

Q ss_pred             CCCCCChHHHHHHHHHH------hCCChhhhhcccCcccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHH
Q 004254          268 QVPPFPSETAVSIVEEE------LGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRV  341 (765)
Q Consensus       268 ~vpp~p~~~v~~iie~e------lG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~  341 (765)
                      ..-+++.+.+...+.+.      +|..    +.....++||.|....||+-...+..|+||...|.++..          
T Consensus         5 ~y~~l~~~~l~~yl~~~~~~~~~l~g~----~~~l~~~eiggGn~N~VyrV~~~~~svVVKqa~p~~r~v----------   70 (418)
T PLN02756          5 EFRPLDEKSLVEYIKATPALSSKIGND----LDDLKIKEVGDGNLNFVYIVVSSSGSFVIKQALPYIRCI----------   70 (418)
T ss_pred             ccccCCHHHHHHHHHHccchhhhcCCC----CCCceEEEcCCCceeeEEEEEcCCccEEEEeCCccccCC----------
Confidence            34456666665555543      3321    233456799999999999988777789999887776421          


Q ss_pred             HHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCC
Q 004254          342 IAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPG  419 (765)
Q Consensus       342 la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG  419 (765)
                               +      -+|.-       .+.++   ..|++.+....+.    ..+.||+||.-.....+++|||++|
T Consensus        71 ---------g------a~wpl-------~~~R~---~~Ea~aL~~~~~~----~p~~VPkVy~~ded~~vlvME~L~~  119 (418)
T PLN02756         71 ---------G------ESWPM-------TKERA---YFEATALREHGRL----CPDHVPEVYHFDRTMALIGMRYLEP  119 (418)
T ss_pred             ---------C------ccccC-------CccHH---HHHHHHHHHhhhc----CCCCCCeEEEECCCCCEEEEeecCC
Confidence                     0      01100       00000   2334445444332    3478999998767778999999988

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.16  E-value=1.3e-06  Score=106.55  Aligned_cols=128  Identities=6%  Similarity=-0.118  Sum_probs=77.2

Q ss_pred             CeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCccccCCCCCcEEEee-----------------
Q 004254          409 PQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFFHADPHPGNIAVDD-----------------  469 (765)
Q Consensus       409 ~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~GffHaDpHPGNILV~~-----------------  469 (765)
                      ..+++|||+++ +|.++.......++...+...+.  -..+.++|..|++|+|+||.|||+..                 
T Consensus        54 ~~~~~~e~~~~-~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~  132 (793)
T PLN00181         54 SIVRALECEDV-SLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGS  132 (793)
T ss_pred             hhhhhhccCCc-cHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhCCeeeccCCchhEEEcccCcEEEeeccccCcccc
Confidence            35788998744 88887643333355544444332  33478899999999999999999963                 


Q ss_pred             cCCCcEEEEeecceeccChhhHHHHHHH----------HHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004254          470 VNGGRLIFYDFGMMGSISPNIREGLLEA----------FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       470 ~~~g~l~LiDFGlv~~L~~~~r~~l~~l----------~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l~  537 (765)
                      ..++.+++.|||+++.........+...          -.....+.+.+++++++..+-.....|++++.-.+.+++.
T Consensus       133 ~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~  210 (793)
T PLN00181        133 DEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFC  210 (793)
T ss_pred             cccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhh
Confidence            1133455555555543211000000000          0001124556889998877777888999999987776653

>PRK12396 5-methylribose kinase; Reviewed

Probab=98.13  E-value=3.9e-05  Score=86.10  Aligned_cols=113  Identities=15%  Similarity=0.098  Sum_probs=69.9

Q ss_pred             hCCCCCChHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEeC--CeEEEEEEecCCchhhHHHHHHHHHHHHH
Q 004254          267 DQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAE  344 (765)
Q Consensus       267 d~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~--G~~VAVKVqrP~i~~~i~~DL~il~~la~  344 (765)
                      +..-|+..+.+...+.+.+|. +..- +...-++||-|-..-||++.+.  ++.|+||--.|-++..             
T Consensus         5 ~~y~~l~~~~v~~yl~~~l~~-~~~~-~~~~~~eigdGnlN~VfrV~~~~~~~svIVKQAlp~vRv~-------------   69 (409)
T PRK12396          5 TKYFLMEANDVIVYVKEKLSK-FEHA-KGLQCKEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARIS-------------   69 (409)
T ss_pred             ccceeCCHhHHHHHHHHhcCC-CCCc-ccceeeEcCCCceEEEEEEeeCCCCceEEEEeccHhhccC-------------
Confidence            344566667777766665551 1110 2334589999999999999983  6789999765544310             


Q ss_pred             HHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCC
Q 004254          345 YLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIK  421 (765)
Q Consensus       345 ~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~  421 (765)
                            +.   -+.+..              .-+.|+.-+..+.+...    =.+|++|.-.....++|||+++...
T Consensus        70 ------~s---wpL~~~--------------R~~~E~~aL~~~~~~~P----~~VP~vy~~D~e~~~~vMEdL~~~~  119 (409)
T PRK12396         70 ------DE---FKLSTN--------------RIRIESDVLQLEEELAP----GLVPKVYLFDSVMNCCVMEDLSDHT  119 (409)
T ss_pred             ------CC---CCCChH--------------HHHHHHHHHHHHHhhCC----CcCCeEEEECcHHhhHHHHhCcccH
Confidence                  00   011111              12345555655554332    2499999877778899999997644

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=98.05  E-value=3e-05  Score=83.09  Aligned_cols=33  Identities=24%  Similarity=0.245  Sum_probs=27.9

Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccC
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS  487 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~  487 (765)
                      .+++|+|+||+||++++  ++.+.++||+.++.-+
T Consensus       175 ~~l~HgD~~~~Nil~~~--~~~~~iIDfe~a~~g~  207 (296)
T cd05153         175 RGVIHADLFRDNVLFDG--DELSGVIDFYFACTDA  207 (296)
T ss_pred             CcCCccCcCcccEEEeC--CceEEEeehhhhcCch
Confidence            68999999999999984  5556899999988644

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=98.04  E-value=3.2e-05  Score=84.71  Aligned_cols=178  Identities=13%  Similarity=0.137  Sum_probs=106.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      .-+|.|.||+|-.+..  .+..|||||.+               .+.++                      ++.-     
T Consensus        95 ~~lGeGtFGkV~ec~D~~~~~~vAlKIik---------------~V~kY----------------------reAa-----  132 (415)
T KOG0671|consen   95 DLLGEGTFGKVVECWDRETKEHVALKIIK---------------NVDKY----------------------REAA-----  132 (415)
T ss_pred             hhhcCCcccceEEEeecCCCceehHHHHH---------------HHHHH----------------------hhHH-----
Confidence            5799999999999998  58999999762               11111                      1111     


Q ss_pred             HHHHHHHHHHHHHhcC-CCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCC---CHH---HHHHHHHHHHHHH
Q 004254          377 YTQEAANAELFASNFK-DMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGV---DRK---RLGRYAVESYLEQ  449 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~-~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~---d~~---~ia~~li~~~L~q  449 (765)
                       +.|.+-++++.+.-. +......-.-+-+|-+..++|.|.+ |.++.|..  ...++   .-.   .++..++. .+..
T Consensus       133 -~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghiCivfell-G~S~~dFl--k~N~y~~fpi~~ir~m~~QL~~-sv~f  207 (415)
T KOG0671|consen  133 -LIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHICIVFELL-GLSTFDFL--KENNYIPFPIDHIRHMGYQLLE-SVAF  207 (415)
T ss_pred             -HHHHHHHHHHHhcCCCCceEEEeeehhhhccCceEEEEecc-ChhHHHHh--ccCCccccchHHHHHHHHHHHH-HHHH
Confidence             223334444433221 1112223333457788889999987 55566643  22222   222   22223332 3566


Q ss_pred             HHhCCccccCCCCCcEEEeec------------------CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDV------------------NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ  511 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~------------------~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~  511 (765)
                      +|..+++|.|+||.||++.+.                  ..-.|+++|||.+..-.+..        ..++.--...+-+
T Consensus       208 Lh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~h--------s~iVsTRHYRAPE  279 (415)
T KOG0671|consen  208 LHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHH--------STIVSTRHYRAPE  279 (415)
T ss_pred             HHhcceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcceeccCc--------ceeeeccccCCch
Confidence            789999999999999998531                  01248999999998766543        1222222334456


Q ss_pred             HHHHcCCCCCCCCHHHHHHHH
Q 004254          512 AMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       512 ~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      .++.+|.-. ..|++++.-.+
T Consensus       280 ViLgLGwS~-pCDvWSiGCIL  299 (415)
T KOG0671|consen  280 VILGLGWSQ-PCDVWSIGCIL  299 (415)
T ss_pred             heeccCcCC-ccCceeeeeEE
Confidence            677888855 46998887543

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=97.99  E-value=2.6e-05  Score=84.49  Aligned_cols=176  Identities=20%  Similarity=0.311  Sum_probs=116.8

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +-||-|.-.-||.+.. +|++.++|+-|-|-.     -.+.++.--.++....      ...|.-+         .-+.-
T Consensus        98 nqIGVGKESDIY~v~d~~G~~~~lK~HRLGRt-----SFR~Vk~kRDY~r~r~------~~sWlyL---------SRlaa  157 (465)
T KOG2268|consen   98 NQIGVGKESDIYVVADEEGNPLILKLHRLGRT-----SFRNVKNKRDYLRKRK------SGSWLYL---------SRLAA  157 (465)
T ss_pred             cccccccccceEEEecCCCCchhHHHHhhhhh-----hHHHhhhhhhhHhcCC------ccchhhh---------HHHHH
Confidence            4588899999999999 799999997765532     1222222222222211      1123221         11223


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFH  457 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~GffH  457 (765)
                      .+|..-|..+.+     .++.||+++.  +++.++|||+++|.++..+..+    .++..+...++... .-+-.+|++|
T Consensus       158 ~kEfafmkaL~e-----~gfpVPkpiD--~~RH~Vvmelv~g~Pl~~v~~v----~d~~~ly~~lm~~I-v~la~~GlIH  225 (465)
T KOG2268|consen  158 TKEFAFMKALYE-----RGFPVPKPID--HNRHCVVMELVDGYPLRQVRHV----EDPPTLYDDLMGLI-VRLANHGLIH  225 (465)
T ss_pred             HHHHHHHHHHHH-----cCCCCCCccc--ccceeeHHHhhcccceeeeeec----CChHHHHHHHHHHH-HHHHHcCcee
Confidence            344455555544     4578999994  7889999999999999886533    34556655555443 3456899999


Q ss_pred             cCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004254          458 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (765)
Q Consensus       458 aDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~  515 (765)
                      ||-.-=||+|.+  ++++++|||-.+-..+.+..+.|       +.+|.+-+...+..
T Consensus       226 gDFNEFNimv~d--d~~i~vIDFPQmvS~sh~nA~~Y-------FdRDv~Ci~~fFrK  274 (465)
T KOG2268|consen  226 GDFNEFNIMVKD--DDKIVVIDFPQMVSTSHPNAEYY-------FDRDVECIRAFFRK  274 (465)
T ss_pred             cccchheeEEec--CCCEEEeechHhhccCCCcccee-------ecccHHHHHHHHHH
Confidence            999999999996  88999999999988887665444       24555555554443

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=97.95  E-value=2.4e-05  Score=84.65  Aligned_cols=94  Identities=22%  Similarity=0.368  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCC
Q 004254          274 SETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKS  353 (765)
Q Consensus       274 ~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~  353 (765)
                      |..+.+.|.+.+|.+..    --+.+|++.|++.++|+...+++.+-||+.......                       
T Consensus         2 w~~i~~~~~~~~~~~~~----i~~~~~v~GG~i~~a~~~~~~~~~~FvK~~~~~~~~-----------------------   54 (288)
T PF03881_consen    2 WQAIEQQISEQLGADFK----ITSIEPVSGGDINEAYRLDTDGGSYFVKVNSESGRD-----------------------   54 (288)
T ss_dssp             HHHHHHHHHHHHTS---------EEEEE--SSSSEEEEEETTS-EEEEEEEEGGGCC-----------------------
T ss_pred             hHHHHHHHHHHhCCCCc----eeeeEecCCCChhheEEEECCCccEEEEecChhhHH-----------------------
Confidence            56788899999997621    112379999999999999888999999998532211                       


Q ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCC
Q 004254          354 DGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGI  420 (765)
Q Consensus       354 ~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~  420 (765)
                                            -|..|+..++.+++.    ..+.||+|+.  ++.+..+|+|||++..
T Consensus        55 ----------------------~f~~Ea~gL~~L~~~----~~~~vP~vi~~G~~~~~~fLlle~l~~~   97 (288)
T PF03881_consen   55 ----------------------MFEGEAEGLKALAEA----NPIRVPKVIAWGEYDDDAFLLLEFLEMG   97 (288)
T ss_dssp             ----------------------HHHHHHHHHHHHCHT----TTSBS--EEEEEE-SSCCEEEEE-----
T ss_pred             ----------------------HHHHHHHHHHHHHhc----CCCCCCeEEEEEeecCCceEEEEeecCC
Confidence                                  256677788777542    4578999986  3345679999999977

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>PRK06148 hypothetical protein; Provisional

Probab=97.93  E-value=0.00022  Score=89.37  Aligned_cols=55  Identities=18%  Similarity=0.427  Sum_probs=44.1

Q ss_pred             hhhCCCCCChHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEe-CCeEEEEEEecCC
Q 004254          265 LQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPG  327 (765)
Q Consensus       265 Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~  327 (765)
                      +....|.++.+++.+++++.+|..-       +.+|+++ ..-++|+... +|..+++|+.+|+
T Consensus         4 ~~~~~p~~s~~~~~~~~~~~ygl~~-------~~~~L~s-~~d~nf~v~~~~g~~yVLKi~~~~   59 (1013)
T PRK06148          4 LSHPAPEFTTKDAEALLAQHFGISA-------TATPLDG-ERDLNFRLTTDDGADYILKIVNPS   59 (1013)
T ss_pred             CCCCCCCCCHHHHHHHHHHHcCCce-------EEeecCC-cCCceEEEEeCCCCeEEEEEcCCc
Confidence            4456789999999999999999642       2357865 5688999988 6889999999886

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=97.86  E-value=0.00014  Score=75.12  Aligned_cols=35  Identities=26%  Similarity=0.362  Sum_probs=29.0

Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (765)
                      .++.|+|+||+||++++ +++.+.+|||-.++.-++
T Consensus       170 ~~l~H~Dl~~~Nil~~~-~~~~~~lIDwe~a~~~~~  204 (235)
T cd05157         170 IVFCHNDLLSGNIIYNE-EKNSVKFIDYEYAGYNYR  204 (235)
T ss_pred             EEEEcCCCCcCcEEEeC-CCCCEEEEEcccCCcCch
Confidence            46999999999999984 246799999998886554

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>PRK09902 hypothetical protein; Provisional

Probab=97.84  E-value=0.00038  Score=72.00  Aligned_cols=148  Identities=17%  Similarity=0.111  Sum_probs=97.4

Q ss_pred             ccCcccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          295 RFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       295 ~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      .+|+---+.|+.+.|++-.+.|..+-+|-|.-.+.....               + |.                    -+
T Consensus        20 wve~pN~~rgG~SgV~r~~~~g~~~ylKrq~nhl~~s~r---------------~-P~--------------------g~   63 (216)
T PRK09902         20 WVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVR---------------Y-PF--------------------GR   63 (216)
T ss_pred             eecCCCcCCCCcceEEEEEeCCcEEEEEeccCccccccc---------------C-CC--------------------Cc
Confidence            455555677999999999888889999988433322210               0 11                    12


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeecc------CCCeEEEEeecCCC-Chhhhhhhhhc---CCCHHHHHHHHHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEY------TTPQILTMEYVPGI-KINRIQSLDEL---GVDRKRLGRYAVE  444 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~------st~~vLVMEyieG~-~L~d~~~l~~~---g~d~~~ia~~li~  444 (765)
                      --|.+|-+++.++.+     .+|.||++.-.-      .-+.+||+|-++|. +|.++......   +...++-.-..+.
T Consensus        64 ptf~rE~~~L~~L~~-----~GvPVP~pvf~~~~k~~~~~rA~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va  138 (216)
T PRK09902         64 PTIVREVAVIKELER-----AGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVA  138 (216)
T ss_pred             hHHHHHHHHHHHHHH-----cCCCCCccceeeeeccCCceEEEEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHH
Confidence            356777788888876     356678777211      11369999999874 66665321111   1112222333355


Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCc--EEEEeecceec
Q 004254          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGR--LIFYDFGMMGS  485 (765)
Q Consensus       445 ~~L~qi~~~GffHaDpHPGNILV~~~~~g~--l~LiDFGlv~~  485 (765)
                      ..+.++|..|+.|+||-|-||+++.  +|+  +.||||=-++.
T Consensus       139 ~~ia~LH~~Gv~Hgdly~khIll~~--~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        139 LAFKKMHSVNRQHGCCYVRHIYVKT--EGKAEAGFLDLEKSRR  179 (216)
T ss_pred             HHHHHHHHCCCcCCCCCHhheeecC--CCCeeEEEEEhhccch
Confidence            6688999999999999999999985  445  99999965543

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=97.84  E-value=0.0002  Score=77.65  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=28.8

Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (765)
                      ..+++|+|+||+||++++  ++...+|||+.+..-.+
T Consensus       186 ~~~l~HgD~~~~Nvl~~~--~~~~~vIDfd~~~~~~~  220 (307)
T TIGR00938       186 PRGVIHADLFPDNVLFDG--DSVKGVIDFYFACTDAR  220 (307)
T ss_pred             CCccCCCCCCcCcEEEEC--CceEEEeecccccCcch
Confidence            378999999999999985  55568999999876443

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>PRK06149 hypothetical protein; Provisional

Probab=97.76  E-value=0.00029  Score=88.14  Aligned_cols=59  Identities=15%  Similarity=0.213  Sum_probs=43.9

Q ss_pred             HHhhhhCCCCCChHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEeCCeEEEEEEecCCc
Q 004254          262 LSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGL  328 (765)
Q Consensus       262 L~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i  328 (765)
                      +..+....|.++.+++.+++++.+|..- +      ..++++... ++|+...++..+++|+.+|+.
T Consensus         7 ~~~~~~~~p~ls~~~~~~ll~~~ygl~~-~------~~~L~s~~d-~nf~v~t~~~~yVLKi~~~~~   65 (972)
T PRK06149          7 IDRSSLPAPDVSEAQAERILAEHYGLSG-T------LTELGSQQD-RNFRVDSDGGRFVLKICHAAY   65 (972)
T ss_pred             hccCCCCCCCCCHHHHHHHHHHhcCCce-E------EEecCCcCc-ceEEEEecCCcEEEEeCCccC
Confidence            4456677899999999999999998541 1      246765554 789888755678889998753

>PLN02876 acyl-CoA dehydrogenase

Probab=97.76  E-value=0.00029  Score=86.63  Aligned_cols=106  Identities=15%  Similarity=0.201  Sum_probs=67.1

Q ss_pred             CChHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEeC-C---eEEEEEEecCCchhhHHHHHHHHHHHHHHHh
Q 004254          272 FPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-G---EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ  347 (765)
Q Consensus       272 ~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~-G---~~VAVKVqrP~i~~~i~~DL~il~~la~~l~  347 (765)
                      ++.+.+.+.+.+.++. +..-...+..++++.|....+|+-+.. |   ..+++|...|+....                
T Consensus        18 ~d~~~l~~~l~~~~~~-~~~~~~~~~v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~----------------   80 (822)
T PLN02876         18 FDEDALLRYAAANVAG-FPVPPSTFKVSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQ----------------   80 (822)
T ss_pred             CCHHHHHHHHHHhCCC-cCCCccceeEEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCc----------------
Confidence            5666666666665431 111111245678999999999998873 3   478888765542110                


Q ss_pred             hcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccC-----CCeEEEEeecCCCCh
Q 004254          348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT-----TPQILTMEYVPGIKI  422 (765)
Q Consensus       348 ~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s-----t~~vLVMEyieG~~L  422 (765)
                                               ..-++.+|++.+..+..    ...|.||++|+...     +..++||||++|..+
T Consensus        81 -------------------------~~~~~~rE~~~l~~L~~----~~~vpVP~v~~~~~d~~v~G~~flVME~v~G~~~  131 (822)
T PLN02876         81 -------------------------SAHAVEREYQVLRALGE----HTDVPVPKVYCLCTDASVIGTAFYIMEYLEGRIF  131 (822)
T ss_pred             -------------------------cHHHHHHHHHHHHHHhh----cCCCCCCcEEEEecCCCcCCCceEEEEecCCccc
Confidence                                     01145567777766643    25588999997433     346899999999865


Q ss_pred             h
Q 004254          423 N  423 (765)
Q Consensus       423 ~  423 (765)
                      .
T Consensus       132 ~  132 (822)
T PLN02876        132 V  132 (822)
T ss_pred             C
Confidence            3

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=97.72  E-value=0.00025  Score=76.57  Aligned_cols=43  Identities=23%  Similarity=0.427  Sum_probs=32.2

Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhh
Q 004254          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNI  490 (765)
Q Consensus       446 ~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~  490 (765)
                      ....+|..|++|+|++|.|++++.  +|.+.|.||+.+.+.....
T Consensus       157 lvA~Lh~~GlVHgdi~~~nfll~~--~G~v~Lg~F~~~~r~g~~~  199 (288)
T PF14531_consen  157 LVANLHSYGLVHGDIKPENFLLDQ--DGGVFLGDFSSLVRAGTRY  199 (288)
T ss_dssp             HHHHHHHTTEEEST-SGGGEEE-T--TS-EEE--GGGEEETTEEE
T ss_pred             HHHHHhhcceEecccceeeEEEcC--CCCEEEcChHHHeecCcee
Confidence            355678999999999999999996  8999999999988766543

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=97.57  E-value=0.0009  Score=74.46  Aligned_cols=82  Identities=20%  Similarity=0.129  Sum_probs=51.7

Q ss_pred             ccccceeEEEEEEeC-C-eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          301 IAAASLGQVHRARLK-G-EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       301 IgsaSiGQVhrA~l~-G-~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      ||-|-..-||++... | +.|+||.-.|-++..                   +..  -+.+..              .-.
T Consensus         3 igdGnlN~VfrV~~~~g~~svIVKQAlp~vRv~-------------------g~~--wpl~~~--------------R~~   47 (370)
T TIGR01767         3 VGDGNLNLVFHVYDQEGDRAAIVKQALPYVRVV-------------------GES--WPLTLD--------------RAR   47 (370)
T ss_pred             CCCCceEEEEEEEcCCCCeeEEEEEcCHHHhhc-------------------CCC--CCCCcc--------------HHH
Confidence            688999999999994 4 689999776644311                   000  001111              112


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCC
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIK  421 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~  421 (765)
                      .|+.-+....+..   | =.+|++|.-.....+++||+++...
T Consensus        48 ~E~~~L~~~~~~~---P-~~vP~vy~~D~e~~~~vMEdL~~~~   86 (370)
T TIGR01767        48 IESSALIRQGEHV---P-HLVPRIFHFDTEMAVTVMEDLSHHK   86 (370)
T ss_pred             HHHHHHHHhhccC---c-cccCeEEEEccccceehHhhCccch
Confidence            4555555444422   2 2699999877788899999996644

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.48  E-value=0.00057  Score=77.18  Aligned_cols=138  Identities=17%  Similarity=0.213  Sum_probs=75.3

Q ss_pred             Chhhhhc---ccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHH
Q 004254          288 PLDDVFE---RFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (765)
Q Consensus       288 ~~eeiF~---~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~  362 (765)
                      .++++|.   +.-...+|=|-|..||.|.+  ..+-||+||++-.                                   
T Consensus        70 ~IGD~F~~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA-----------------------------------  114 (590)
T KOG1290|consen   70 RIGDVFNGGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSA-----------------------------------  114 (590)
T ss_pred             eccccccCceEEEEEeccccccceeEEEeeccCCeEEEEEEEehh-----------------------------------
Confidence            3456665   33457899999999999999  5789999999532                                   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeecc--C----CCeEEEEeecCCCChhhhh-hhhhcCCCH
Q 004254          363 IYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY--T----TPQILTMEYVPGIKINRIQ-SLDELGVDR  435 (765)
Q Consensus       363 i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~--s----t~~vLVMEyieG~~L~d~~-~l~~~g~d~  435 (765)
                        +.+.++-..|+.+...++...     -.+...=.|-+.+..+  +    ...+||.|++ |-.|-.+. ...-.|+..
T Consensus       115 --qhYtEaAlDEIklL~~v~~~D-----p~~~~~~~VV~LlD~FkhsGpNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl  186 (590)
T KOG1290|consen  115 --QHYTEAALDEIKLLQQVREGD-----PNDPGKKCVVQLLDHFKHSGPNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPL  186 (590)
T ss_pred             --hHHHHHHHHHHHHHHHHHhcC-----CCCCCCceeeeeeccceecCCCCcEEEEEehhh-hhHHHHHHHHhCCCCCcH
Confidence              112222223333322222111     0000111222222222  1    2348999987 43333332 222234443


Q ss_pred             H---HHHHHHHHHHHHHHH-hCCccccCCCCCcEEEee
Q 004254          436 K---RLGRYAVESYLEQIL-SHGFFHADPHPGNIAVDD  469 (765)
Q Consensus       436 ~---~ia~~li~~~L~qi~-~~GffHaDpHPGNILV~~  469 (765)
                      .   +|++. +-..|.++| +.|++|.|+||.|||+..
T Consensus       187 ~~VK~I~~q-vL~GLdYLH~ecgIIHTDlKPENvLl~~  223 (590)
T KOG1290|consen  187 SCVKEICRQ-VLTGLDYLHRECGIIHTDLKPENVLLCS  223 (590)
T ss_pred             HHHHHHHHH-HHHHHHHHHHhcCccccCCCcceeeeec
Confidence            2   33322 223467777 579999999999999863

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=97.45  E-value=0.00059  Score=73.47  Aligned_cols=36  Identities=25%  Similarity=0.318  Sum_probs=30.1

Q ss_pred             CCccccCCCCCcEEEeecC---CCcEEEEeecceeccChh
Q 004254          453 HGFFHADPHPGNIAVDDVN---GGRLIFYDFGMMGSISPN  489 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~---~g~l~LiDFGlv~~L~~~  489 (765)
                      .++.|+|+||+||++++ +   ++.+.+|||..++.-++.
T Consensus       179 ~~lcH~Dl~~~Nil~~~-~~~~~~~i~lIDwEya~~~~p~  217 (302)
T cd05156         179 VVFCHNDLQEGNILLLN-PSSETKKLVLIDFEYASYNYRG  217 (302)
T ss_pred             ceEEecCCCcCeEEecC-CCCCCCcEEEEeeCCCCCCCcH
Confidence            46899999999999984 1   278999999999977663

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=97.31  E-value=0.0011  Score=73.28  Aligned_cols=29  Identities=38%  Similarity=0.567  Sum_probs=25.1

Q ss_pred             ccccCCCCCcEEEeecCCC-cEEEEeecceec
Q 004254          455 FFHADPHPGNIAVDDVNGG-RLIFYDFGMMGS  485 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g-~l~LiDFGlv~~  485 (765)
                      ++|+|+||+||++++  +. -+.++|||-++.
T Consensus       199 iIH~D~~~~NVl~d~--~~~~~g~iDFdDa~~  228 (331)
T COG2334         199 IIHGDLHPDNVLFDD--DTDVSGFIDFDDAGY  228 (331)
T ss_pred             eeecCCCccceeEcC--CCCeeeEEEcccccc
Confidence            899999999999985  44 388999998875

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=97.29  E-value=0.008  Score=64.68  Aligned_cols=35  Identities=29%  Similarity=0.464  Sum_probs=29.1

Q ss_pred             CCccccCCCCCcEEEeecCCCc-EEEEeecceeccChh
Q 004254          453 HGFFHADPHPGNIAVDDVNGGR-LIFYDFGMMGSISPN  489 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~-l~LiDFGlv~~L~~~  489 (765)
                      ..++|+|+||+||++++  +++ ..++||+.+..-++.
T Consensus       185 ~~lvHGD~~~~Nilv~~--~~~~~gviDWe~a~iGDPa  220 (276)
T cd05152         185 TVLVHGDLHPGHILIDE--DARVTGLIDWTEAKVGDPA  220 (276)
T ss_pred             CeeEeCCCCCCcEEEeC--CCCEEEEECcHhcccCCHH
Confidence            35899999999999984  466 469999999987764

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=97.20  E-value=0.0058  Score=67.15  Aligned_cols=36  Identities=25%  Similarity=0.342  Sum_probs=31.2

Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhh
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNI  490 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~  490 (765)
                      ..++|+|.|+||+++++  ++.+.++||+++..=+|..
T Consensus       198 ~~lvHGD~~~gNlii~~--~~~~gVlDwe~~~lGDP~~  233 (321)
T COG3173         198 PVLVHGDYRPGNLIIDP--GRPTGVLDWELATLGDPLE  233 (321)
T ss_pred             ceeeeCCcccCCEEEeC--CCeeEEEeccccccCCcHH
Confidence            46999999999999986  6669999999999887743

>PRK11768 serine/threonine protein kinase; Provisional

Probab=97.19  E-value=0.0057  Score=67.20  Aligned_cols=32  Identities=28%  Similarity=0.225  Sum_probs=26.4

Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccC
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS  487 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~  487 (765)
                      ..|++|+|+|||||+++   + .+.++||+-++.=.
T Consensus       195 ~~~liHgD~h~~NvL~~---d-~~~iIDFDd~~~g~  226 (325)
T PRK11768        195 RLLRLHGDCHPGNILWR---D-GPHFVDLDDARMGP  226 (325)
T ss_pred             CccceecCCCchhcccc---C-CcEEEeCCCCCCCC
Confidence            35799999999999994   4 57899999988543

>PLN02236 choline kinase

Probab=97.10  E-value=0.0069  Score=67.18  Aligned_cols=161  Identities=22%  Similarity=0.334  Sum_probs=93.7

Q ss_pred             HHHHHHHHHhCCChhhhh--cccCcccccccceeEEEEEEe-C-----CeEEEEEEecCCchhhHHHHHHHHHHHHHHHh
Q 004254          276 TAVSIVEEELGAPLDDVF--ERFDVEPIAAASLGQVHRARL-K-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ  347 (765)
Q Consensus       276 ~v~~iie~elG~~~eeiF--~~fd~~PIgsaSiGQVhrA~l-~-----G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~  347 (765)
                      .+.+++.+ ++..|.++.  +.++.+|+..|---++|+... .     ++.|++|+-.++....                
T Consensus        18 ~~~~~~~~-~~~~w~~~~~~~~~~i~~l~gGlTN~~y~v~~~~~~~~~~~~~v~Ri~g~~t~~~----------------   80 (344)
T PLN02236         18 ELKRILHS-LASKWGDVVDDEALQVIPLKGAMTNEVFQIKWPTKEGNLGRKVLVRIYGEGVELF----------------   80 (344)
T ss_pred             HHHHHHHH-hcchhcCCCCcCcEEEEEcCCcccceeEEEEeCCCCCCCCCeEEEEEccCCCCee----------------
Confidence            34455554 555566542  245668898899999999886 2     3689999876654222                


Q ss_pred             hcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhh-
Q 004254          348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQ-  426 (765)
Q Consensus       348 ~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~-  426 (765)
                                                 +|-.+|.+++..+.+.     ++ -|+++....+  ..++||++|.+++... 
T Consensus        81 ---------------------------idR~~E~~~~~~l~~~-----gl-~P~~~~~~~~--g~v~efi~g~~l~~~~l  125 (344)
T PLN02236         81 ---------------------------FDRDDEIRTFECMSRH-----GQ-GPRLLGRFPN--GRVEEFIHARTLSAADL  125 (344)
T ss_pred             ---------------------------echHHHHHHHHHHHHc-----CC-CCceEEEECC--ceEEEeeCCCCCCHHHc
Confidence                                       1223455666655542     22 5677654433  3689999998875310 


Q ss_pred             -------h-------hhhcC------CCH-HHHHHH-------------------HHHHH---HHHHH-----hCCcccc
Q 004254          427 -------S-------LDELG------VDR-KRLGRY-------------------AVESY---LEQIL-----SHGFFHA  458 (765)
Q Consensus       427 -------~-------l~~~g------~d~-~~ia~~-------------------li~~~---L~qi~-----~~GffHa  458 (765)
                             .       +....      .+. .++...                   .+...   ++..+     ...+.|+
T Consensus       126 ~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~cH~  205 (344)
T PLN02236        126 RDPEISALIAAKLREFHSLDMPGPKNVLLWDRLRNWLKEAKNLCSPEEAKEFRLDSLEDEINLLEKELSGDDQEIGFCHN  205 (344)
T ss_pred             CChHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhhcCcchhhhcCHHHHHHHHHHHHHHhcccCCCceEEeC
Confidence                   0       11111      110 111100                   00000   11111     2368999


Q ss_pred             CCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004254          459 DPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (765)
Q Consensus       459 DpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (765)
                      |+||+||++++ .++.+.+|||..++.-++.
T Consensus       206 Dl~~~Nil~~~-~~~~~~lID~Eya~~~~~~  235 (344)
T PLN02236        206 DLQYGNIMIDE-ETRAITIIDYEYASYNPVA  235 (344)
T ss_pred             CCCcCcEEEeC-CCCcEEEEeehhccccchH
Confidence            99999999974 3468999999999876653

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.10  E-value=0.0078  Score=63.07  Aligned_cols=96  Identities=22%  Similarity=0.326  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCC
Q 004254          274 SETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKS  353 (765)
Q Consensus       274 ~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~  353 (765)
                      |..+.+.+-+.+|..  ++   -+.+++.-|.+-+.|+-.....++-||+....                          
T Consensus         2 w~~i~~qlse~~g~~--~i---~er~~v~gG~inea~~v~dg~~~~FvK~n~~~--------------------------   50 (286)
T COG3001           2 WQAISQQLSEQLGEG--EI---KEREEVSGGDINEAWRLRDGTDPFFVKCNQRE--------------------------   50 (286)
T ss_pred             hHHHHHHHHHHhCch--hh---hcccccCCccccceeEeecCCcceEEEecchh--------------------------
Confidence            567778888888865  22   24478888888888887777889999987110                          


Q ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCC--CeEEEEeecCCCChh
Q 004254          354 DGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTT--PQILTMEYVPGIKIN  423 (765)
Q Consensus       354 ~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st--~~vLVMEyieG~~L~  423 (765)
                                         .+--|..||.+++.+++    ...|.||+|+..-++  ..+|||||++-++++
T Consensus        51 -------------------~~~~f~AEa~gL~~la~----s~ti~VP~vi~~G~~~~~sylVle~L~~~~~d   99 (286)
T COG3001          51 -------------------QLSMFTAEADGLELLAR----SNTITVPKVIAVGASRDHSYLVLEYLPTGPLD   99 (286)
T ss_pred             -------------------hHHHHHHHHHHHHHHHh----cCCccccceEEecCCCCeeEEEEeeccCCCCC
Confidence                               12246778888888875    345899999975543  469999999987776

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.08  E-value=0.0099  Score=61.12  Aligned_cols=155  Identities=21%  Similarity=0.315  Sum_probs=92.0

Q ss_pred             cccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      ..|||+|+.=-||.-- +.....|||.+|+....-.       ....++.++.|..             -.+...+|+++
T Consensus         6 ~~~i~~G~~R~cy~HP-~dp~~cIKV~~~~~~~~~~-------~~~~~~k~~~~~~-------------~~~~~~~E~~~   64 (199)
T PF10707_consen    6 SDLIAQGGERDCYQHP-DDPNLCIKVMRPDRGERRR-------PFKRWLKRLRPKS-------------RYRQNRRELRY   64 (199)
T ss_pred             CcccccCCCceEEECC-CCCCeEEEEEccccccccc-------cchhHHHhhcccc-------------hhHHHHHHHHH
Confidence            4689999876655432 3566899999997622111       1112222222210             01222334333


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCC--eEEEEeecCC------CChhhhhhhhhcCCCHHHHHHHHHHHHHHH
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTP--QILTMEYVPG------IKINRIQSLDELGVDRKRLGRYAVESYLEQ  449 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~--~vLVMEyieG------~~L~d~~~l~~~g~d~~~ia~~li~~~L~q  449 (765)
                            ...+.. -.+.....+|++|..-.|.  .-+|+|.|..      .+|.++.  ...+++.  -...+++.+.+.
T Consensus        65 ------y~~l~~-~~~~~~~~i~r~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l--~~~~~~~--~~~~~L~~f~~~  133 (199)
T PF10707_consen   65 ------YKQLSL-RRGVDWSHIPRFYGFVETNLGLGLVVELIRDADGNISPTLEDYL--KEGGLTE--ELRQALDEFKRY  133 (199)
T ss_pred             ------HHHHhh-ccCCcccccccEeEEEecCCceEEEEEEEECCCCCcCccHHHHH--HcCCccH--HHHHHHHHHHHH
Confidence                  333332 2344567889888755444  4788888743      2344443  2333444  445667888899


Q ss_pred             HHhCCccccCCCCCcEEEeecCCC--cEEEEe-eccee
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGG--RLIFYD-FGMMG  484 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g--~l~LiD-FGlv~  484 (765)
                      ++.++++..|++|+||++....++  +++++| ||-..
T Consensus       134 l~~~~Iv~~dl~~~NIv~~~~~~~~~~lvlIDG~G~~~  171 (199)
T PF10707_consen  134 LLDHHIVIRDLNPHNIVVQRRDSGEFRLVLIDGLGEKE  171 (199)
T ss_pred             HHHcCCeecCCCcccEEEEecCCCceEEEEEeCCCCcc
Confidence            999999999999999999864444  599999 34433

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=96.88  E-value=0.0028  Score=61.87  Aligned_cols=95  Identities=15%  Similarity=0.139  Sum_probs=65.9

Q ss_pred             ChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHH
Q 004254          421 KINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAF  498 (765)
Q Consensus       421 ~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~  498 (765)
                      +|.++.......++...+...+.+  ..+..+|..|      ||+||+++.  ++.+++  ||++...+....       
T Consensus         2 sL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~------kp~Nil~~~--~~~~~~--fG~~~~~~~~~~-------   64 (176)
T smart00750        2 SLADILEVRGRPLNEEEIWAVCLQCLRALRELHRQA------KSGNILLTW--DGLLKL--DGSVAFKTPEQS-------   64 (176)
T ss_pred             cHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcC------CcccEeEcC--ccceee--ccceEeeccccC-------
Confidence            455544322333555554444333  3366777777      999999985  778887  999987765321       


Q ss_pred             HHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          499 YGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       499 ~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                          .++..++++++...+...+..|++++.-.+.+++
T Consensus        65 ----~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~ell   98 (176)
T smart00750       65 ----RVDPYFMAPEVIQGQSYTEKADIYSLGITLYEAL   98 (176)
T ss_pred             ----CCcccccChHHhcCCCCcchhhHHHHHHHHHHHH
Confidence                3578899999998877788899999988776654

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=96.80  E-value=0.0014  Score=79.95  Aligned_cols=90  Identities=21%  Similarity=0.187  Sum_probs=63.7

Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccCh----hhHHHHHHHH-----HHHhhcCHHHHHHHHHH
Q 004254          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP----NIREGLLEAF-----YGIYEKDADKVLQAMVQ  515 (765)
Q Consensus       445 ~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~----~~r~~l~~l~-----~ai~~~D~~~i~~~l~~  515 (765)
                      ..++++|..|++|+|++|.|++|+.  -|.+++.|||+....-.    ...+.+++-+     -.-+.+.+++++++++.
T Consensus       154 la~Eylh~ygivhrdlkpdnllIT~--mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVil  231 (1205)
T KOG0606|consen  154 LAVEYLHSYGIVHRDLKPDNLLITS--MGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVIL  231 (1205)
T ss_pred             HHhHhhccCCeecCCCCCCcceeee--cccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhhh
Confidence            3468899999999999999999996  79999999998764322    1222222211     11234667888888887


Q ss_pred             cCCCCCCCCHHHHHHHHHHHH
Q 004254          516 MGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       516 lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +--+...+|-+++.-..++|+
T Consensus       232 rqgygkpvdwwamGiIlyeFL  252 (1205)
T KOG0606|consen  232 RQGYGKPVDWWAMGIILYEFL  252 (1205)
T ss_pred             hhccCCCccHHHHHHHHHHHh
Confidence            765667788888877666654

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=96.80  E-value=0.0014  Score=76.17  Aligned_cols=122  Identities=13%  Similarity=0.131  Sum_probs=83.7

Q ss_pred             CCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecC
Q 004254          394 MDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVN  471 (765)
Q Consensus       394 ~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~GffHaDpHPGNILV~~~~  471 (765)
                      .+.+.-+....+..++.+++++|+.|+.+..-.... ...+....+...++  ..+.+.|..|++|+|+||.||+++.  
T Consensus        56 ~~f~v~lhyafqt~~kl~l~ld~~rgg~lft~l~~~-~~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~--  132 (612)
T KOG0603|consen   56 TPFLVKLHYAFQTDGKLYLILDFLRGGDLFTRLSKE-VMFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLL--  132 (612)
T ss_pred             CCceeeeeeeeccccchhHhhhhcccchhhhccccC-CchHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecc--
Confidence            444555555556678889999999998765432111 11222223333333  3367888999999999999999986  


Q ss_pred             CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          472 GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       472 ~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      +|.+++.|||..+..-+....          .+++.++++++.. |- ....|-..+..
T Consensus       133 ~Ghi~~tdfglske~v~~~~~----------cgt~eymApEI~~-gh-~~a~D~ws~gv  179 (612)
T KOG0603|consen  133 EGHIKLTDFGLSKEAVKEKIA----------CGTYEYRAPEIIN-GH-LSAADWWSFGV  179 (612)
T ss_pred             cCccccCCchhhhHhHhhhhc----------ccchhhhhhHhhh-cc-CCcccchhhhh
Confidence            899999999998876554332          6799999999998 32 34556666554

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=96.68  E-value=0.013  Score=64.49  Aligned_cols=34  Identities=29%  Similarity=0.513  Sum_probs=29.2

Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (765)
                      +.|.|++|+||++.+ .++++.+|||..++.-++.
T Consensus       184 ~CHnDl~~~NiL~~~-~~~~l~lID~EYag~nd~~  217 (330)
T PLN02421        184 FAHNDLLSGNLMLNE-DEGKLYFIDFEYGSYSYRG  217 (330)
T ss_pred             EEECCCCcccEEEeC-CCCcEEEEcccccCCCccH
Confidence            799999999999974 3578999999999977664

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=96.51  E-value=0.00057  Score=83.34  Aligned_cols=39  Identities=26%  Similarity=0.272  Sum_probs=32.4

Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeeccee
Q 004254          444 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  484 (765)
Q Consensus       444 ~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~  484 (765)
                      -..+.|+|..|+.|||+|.+||||+.  -+-+.|.||..-+
T Consensus       130 L~al~qcH~~gVcHGDIKsENILiTS--WNW~~LtDFAsFK  168 (1431)
T KOG1240|consen  130 LKALSQCHKLGVCHGDIKSENILITS--WNWLYLTDFASFK  168 (1431)
T ss_pred             HHHHHHHHHcCccccccccceEEEee--echhhhhcccccC
Confidence            34589999999999999999999985  4567788887654

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=96.41  E-value=0.0034  Score=74.65  Aligned_cols=71  Identities=23%  Similarity=0.236  Sum_probs=48.3

Q ss_pred             EeecCCCChhhhhhhh-hcCCCHHHHHHHHHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccC
Q 004254          414 MEYVPGIKINRIQSLD-ELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS  487 (765)
Q Consensus       414 MEyieG~~L~d~~~l~-~~g~d~~~ia~~li~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~  487 (765)
                      ||||++ .|..+.... ..........-..+..-++.+|..|+-|+|+||.|+++..  +|.++++|||.+....
T Consensus       400 mE~~~~-Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~--~g~lki~Dfg~~~vf~  471 (601)
T KOG0590|consen  400 MEYCPY-DLFSLVMSNGKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTE--NGILKIIDFGAASVFR  471 (601)
T ss_pred             hhcccH-HHHHHHhcccccchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEec--CCceEEeecCcceeec
Confidence            999999 777754321 1111111111111222347788999999999999999996  8899999999877554

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=96.31  E-value=0.0012  Score=75.38  Aligned_cols=123  Identities=17%  Similarity=0.145  Sum_probs=78.2

Q ss_pred             eEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHh----CCccccCCCCCcEEEeecCCCcEEEEeecceec
Q 004254          410 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS----HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS  485 (765)
Q Consensus       410 ~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~----~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~  485 (765)
                      .++.|++|+-.+|.||......+..+..   .++....+|+-.    .|.+|+|++|.||+...  +.++++.|||++..
T Consensus       331 lyI~Mn~c~~~tledWl~rr~~~e~~s~---s~~~~~~~q~~~~~~yk~~ihrdlkp~nif~~~--d~q~kIgDFgl~ts  405 (516)
T KOG1033|consen  331 LYIQMNLCEKETLEDWLRRRRTGEERSL---SLMLDIFKQIAPAVEYKGLIHRDLKPSNIFFSD--DDQLKIGDFGLVTS  405 (516)
T ss_pred             hhhhhhhhhhhhHHHHhhCCCcccccch---hHHHHHHHhhccchhhccchhhhcccccccccc--chhhhhhhhhheee
Confidence            5899999999999998753333332221   122223334332    89999999999999986  77999999999988


Q ss_pred             cChhh--HHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Q 004254          486 ISPNI--REGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSF  539 (765)
Q Consensus       486 L~~~~--r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l~~~  539 (765)
                      .+...  ....++....  .+..-||.++=+.-.-+....|.++|+-.+.+++..|
T Consensus       406 ~~~~~~~~~~~a~~t~~--~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f  459 (516)
T KOG1033|consen  406 QDKDETVAPAAASHTQQ--VGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQF  459 (516)
T ss_pred             cccCCcccchhhhhhhc--ccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHh
Confidence            76544  0011111111  1233344444444444566789999988777766544

>KOG2269 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.11  E-value=0.049  Score=59.72  Aligned_cols=187  Identities=17%  Similarity=0.181  Sum_probs=108.8

Q ss_pred             cccccceeEEEEEEe----CC--------eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004254          300 PIAAASLGQVHRARL----KG--------EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (765)
Q Consensus       300 PIgsaSiGQVhrA~l----~G--------~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (765)
                      .|+.|.-+.|..|.-    +|        +++||||-+.-+.+--.+|-.|=- =.+|=.++      .+.++..|+.-+
T Consensus       259 iIsTGKEsvvlHAY~GS~E~~~qd~ql~ptecAIKvfKTTLnEFKnRd~YiKD-DfRFKDRF------SK~NpR~i~~mW  331 (531)
T KOG2269|consen  259 IISTGKESVVLHAYAGSNEHGHQDPQLSPTECAIKVFKTTLNEFKNRDEYIKD-DFRFKDRF------SKQNPRGILKMW  331 (531)
T ss_pred             hhhcCcceEEEEeccCcccccccCcccCchHHHHHHHHHHHHHHhhhhhhhcc-chhhhhhh------cccCcHHHHHHH
Confidence            477777788877743    22        357787764433332222221100 00111111      123555555544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh--cCCCHHHHHHHHHHH
Q 004254          368 ASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE--LGVDRKRLGRYAVES  445 (765)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~--~g~d~~~ia~~li~~  445 (765)
                      +         ..|..|+.|+.+     .++.+|.|+.  -.+.||||.|+.--.+.. ..+..  ..-+..+-+...+..
T Consensus       332 A---------EkEmhNL~RMq~-----~GlpcP~vV~--lkkhvLVMsFiGd~~~aA-PkLK~v~l~d~E~~~aY~q~~~  394 (531)
T KOG2269|consen  332 A---------EKEMHNLSRMQK-----HGLPCPQVVK--LKKHVLVMSFIGDQGLAA-PKLKNVELTDDERRNAYDQVQS  394 (531)
T ss_pred             H---------HHHHHHHHHHHh-----cCCCCCceee--eecceEEEEeecCCCCCC-ccccccccChHHHHHHHHHHHH
Confidence            4         357789999876     4577888873  567899999985322211 01111  111222333334444


Q ss_pred             HHHHH-HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004254          446 YLEQI-LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (765)
Q Consensus       446 ~L~qi-~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~  520 (765)
                      .++++ ++.-++|+|+.--|+|..   .|++.+||-..+...+...--.       ++.+|...+...+...|...
T Consensus       395 ~M~~lY~Ec~LVHADlSEyN~Lw~---~gKvw~IDVsQsvep~HP~~Le-------FL~RDc~Ni~~FF~r~G~pn  460 (531)
T KOG2269|consen  395 IMCRLYKECLLVHADLSEYNLLWT---PGKVWVIDVSQSVEPSHPRSLE-------FLTRDCQNIITFFTRIGTPN  460 (531)
T ss_pred             HHHHHHHhhheeecchhhhhheec---CCceEEEechhccCCCCcchhH-------HHHHHHHHHHHHHHhcCCCC
Confidence            44444 467799999999999997   5799999988776655433222       23467888888888888643

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=96.04  E-value=0.01  Score=66.07  Aligned_cols=39  Identities=26%  Similarity=0.416  Sum_probs=32.2

Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCC--cEEEEeecceec
Q 004254          447 LEQILSHGFFHADPHPGNIAVDDVNGG--RLIFYDFGMMGS  485 (765)
Q Consensus       447 L~qi~~~GffHaDpHPGNILV~~~~~g--~l~LiDFGlv~~  485 (765)
                      ..+++.+|+-|+|+|.+|||+.-.+|+  .+++.|||++--
T Consensus       354 v~hL~~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLA  394 (598)
T KOG4158|consen  354 VTHLHKHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLA  394 (598)
T ss_pred             HHHHHHccchhhcccccceEEEecCCCCcEEEEcccceeee
Confidence            566889999999999999999743343  699999998753

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=95.54  E-value=0.11  Score=53.68  Aligned_cols=142  Identities=15%  Similarity=0.151  Sum_probs=76.5

Q ss_pred             ccccccce-eEEEEEEeCCeEEEEEEe---cCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          299 EPIAAASL-GQVHRARLKGEEVVVKVQ---RPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       299 ~PIgsaSi-GQVhrA~l~G~~VAVKVq---rP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      +-+|.|+- |.|+++..+|+.+|+|+-   .+.-.+....++                 ..  .+. ++    ...-..=
T Consensus        43 efLg~g~~~~~V~kv~I~g~~YALKlf~~~~~~~~~~~~~~~-----------------~~--~~~-~~----~~~~~y~   98 (207)
T PF13095_consen   43 EFLGHGSHDGYVFKVEIDGRIYALKLFRFWDYTEPDYTRERF-----------------AG--HET-SL----STPAHYA   98 (207)
T ss_pred             eecCCCCceeEEEEEEECCeEEEEEEeeccccCCCccccccc-----------------cc--ccc-cc----chhhhhc
Confidence            56899999 999999999999999992   111110000000                 00  000 00    0000001


Q ss_pred             HHHHHHHHHHHHHHHhcCCCC-------ccccce-----------eeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHH
Q 004254          375 IDYTQEAANAELFASNFKDMD-------YVKVPT-----------IFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK  436 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~-------~V~vP~-----------vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~  436 (765)
                      -.|..|+|.-.++.+.-..+-       ++....           .........-+|.||++...-.          ...
T Consensus        99 ~PF~~ECRAfgRLke~~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~~~----------~~~  168 (207)
T PF13095_consen   99 DPFNCECRAFGRLKEAGREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDPPL----------QIR  168 (207)
T ss_pred             ChHHHHHHhhHHHHhccccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcccc----------chh
Confidence            167777777777766543221       111110           0000112346888888775511          111


Q ss_pred             HHHHHHHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecce
Q 004254          437 RLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMM  483 (765)
Q Consensus       437 ~ia~~li~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv  483 (765)
                      .+-+  +..=++.++..|++-.|+++.|..     +|  +|+|||.+
T Consensus       169 ~~~~--~~~dl~~~~k~gI~~~Dv~~~ny~-----~G--~lvDfs~~  206 (207)
T PF13095_consen  169 DIPQ--MLRDLKILHKLGIVPRDVKPRNYR-----GG--KLVDFSSS  206 (207)
T ss_pred             HHHH--HHHHHHHHHHCCeeeccCcccccc-----CC--EEEecccC
Confidence            1111  222356778999999999999986     34  58899864

>PF04655 APH_6_hur: Aminoglycoside/hydroxyurea antibiotic resistance kinase; InterPro: IPR006748 The aminoglycosides are a large group of biologically active bacterial secondary metabolites, best known for their antibiotic properties []

Probab=95.52  E-value=0.03  Score=59.70  Aligned_cols=30  Identities=30%  Similarity=0.324  Sum_probs=26.6

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCc
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGL  328 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i  328 (765)
                      .++..|+.+.|+.++. +|+++++|+..|+-
T Consensus         8 ~~~~~g~~s~V~pv~~~dG~~avLKl~~p~~   38 (253)
T PF04655_consen    8 GPPAHGSSSLVVPVRRADGTPAVLKLAPPHA   38 (253)
T ss_pred             CCCCCCcceEEEEEEcCCCCeEEEEecCCcc
Confidence            4678899999999998 89999999998754

Aminoglycoside phosphotransferases achieve inactivation of these enzymes by phosphorylation, utilising ATP. Likewise, hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0006468 protein phosphorylation, 0019748 secondary metabolic process

>PRK10271 thiK thiamine kinase; Provisional

Probab=94.96  E-value=0.018  Score=58.61  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=28.6

Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (765)
                      .-..|+|+||+||++++  +| +++|||+.++.-++.
T Consensus        77 ~~p~H~D~~~~N~~~~~--~~-~~lIDwe~a~~gDp~  110 (188)
T PRK10271         77 LAPLHMDVHAGNLVHSA--SG-LRLIDWEYAGDGDIA  110 (188)
T ss_pred             eeeecCCCCCccEEEEC--CC-EEEEeCCcccCCCHH
Confidence            34699999999999974  44 999999999988774

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=94.31  E-value=0.1  Score=58.13  Aligned_cols=81  Identities=20%  Similarity=0.192  Sum_probs=47.5

Q ss_pred             Cccccceeee-ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHH--HHH--hCCccccCCCCCcEEEee
Q 004254          395 DYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLE--QIL--SHGFFHADPHPGNIAVDD  469 (765)
Q Consensus       395 ~~V~vP~vy~-e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~--qi~--~~GffHaDpHPGNILV~~  469 (765)
                      +..--|.+|. +-+--.|++|++- |.+|.-+...     +-+++. ..+..+..  .+.  ...|=|+|+|-+||+++ 
T Consensus       285 ~~~e~~~vv~~de~~y~yl~~kdh-gt~is~ik~~-----~~~e~l-sff~s~~sil~~lekkf~fehrnlt~~niLId-  356 (488)
T COG5072         285 VFLETLKVVSLDETLYLYLHFKDH-GTPISIIKAD-----RSEEEL-SFFWSCISILDILEKKFPFEHRNLTLDNILID-  356 (488)
T ss_pred             hhhhcceEEecCCceEEEEEEecC-Cceeeeeecc-----cHHHHH-HHHHHHHHHHhhhhhcCCcccccccccceeee-
Confidence            3445666666 2222346777763 5566543211     111211 12222222  222  35689999999999997 


Q ss_pred             cCCCcEEEEeecceec
Q 004254          470 VNGGRLIFYDFGMMGS  485 (765)
Q Consensus       470 ~~~g~l~LiDFGlv~~  485 (765)
                        +|+|.||||-+++.
T Consensus       357 --~GnvtLIDfklsRl  370 (488)
T COG5072         357 --EGNVTLIDFKLSRL  370 (488)
T ss_pred             --cCceEEEEeeeeec
Confidence              79999999999983

>PTZ00384 choline kinase; Provisional

Probab=93.76  E-value=0.8  Score=51.80  Aligned_cols=33  Identities=27%  Similarity=0.193  Sum_probs=27.0

Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (765)
                      ..+.|-|+++|||+..   ++.+.+|||=-++.=++
T Consensus       227 ~VfCHNDL~~gNIL~~---~~~l~lID~EYA~~n~~  259 (383)
T PTZ00384        227 VLFCHNDLFFTNILDF---NQGIYFIDFDFAGFNYV  259 (383)
T ss_pred             eeeeeccCCcccEEec---CCCEEEEEeccccCCch
Confidence            5789999999999975   56799999987775443

>PF07914 DUF1679: Protein of unknown function (DUF1679); InterPro: IPR012877 This region is found in a number of Caenorhabditis elegans and Caenorhabditis briggsae proteins, in one case (Q19034 from SWISSPROT) as a repeat

Probab=93.62  E-value=1.2  Score=50.82  Aligned_cols=43  Identities=26%  Similarity=0.335  Sum_probs=30.2

Q ss_pred             ccccCCCCCcEEEeecCCCc---EEEEeecceeccChhhHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGR---LIFYDFGMMGSISPNIREGLLEAFY  499 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~---l~LiDFGlv~~L~~~~r~~l~~l~~  499 (765)
                      ++|+|++..|||.+..++|+   -.||||=++-.-++.  +.+++++.
T Consensus       270 L~HGDLw~~NiLw~k~~~g~~~l~AIIDwQ~vh~G~~~--eDl~Rll~  315 (414)
T PF07914_consen  270 LVHGDLWSSNILWDKDSDGKLKLKAIIDWQCVHRGSPA--EDLARLLV  315 (414)
T ss_pred             eecCCccHHheeeecCCchhHHHHHHHHHHHhhcCchH--HHHHHHHH
Confidence            68999999999999744543   458898877766553  33444443

In many of the family members, this region is associated with the CHK region described by SMART as being found in zinc finger-C4 and HLH domain-containing kinases. In fact, one member of this family (Q9GUC1 from SWISSPROT) is annotated as being a member of the nuclear hormone receptor family, and contains regions typical of such proteins (IPR000536 from INTERPRO, IPR008946 from INTERPRO, and IPR001628 from INTERPRO).

>COG4857 Predicted kinase [General function prediction only]

Probab=93.42  E-value=0.33  Score=52.35  Aligned_cols=50  Identities=20%  Similarity=0.422  Sum_probs=37.3

Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEe--ecceeccChhhHHHHHHHHHHHhhc
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYD--FGMMGSISPNIREGLLEAFYGIYEK  504 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiD--FGlv~~L~~~~r~~l~~l~~ai~~~  504 (765)
                      ..-.+|+|+|.|.|++++   ...++||  |...|.+.-+.-.-++++++....+
T Consensus       227 aetLiHGDLHsGSIfvte---~etkvIDPEFaFYGPmafDiG~~iaNl~~~~~s~  278 (408)
T COG4857         227 AETLIHGDLHSGSIFVTE---KETKVIDPEFAFYGPMAFDIGMLIANLWMSLFSQ  278 (408)
T ss_pred             hHHHhccccccCcEEeec---CcceeeCccccccCcchhhHHHHHHHHHHHHHhh
Confidence            456899999999999984   4567787  7777877766656667777665543

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=93.01  E-value=0.57  Score=52.56  Aligned_cols=131  Identities=13%  Similarity=0.050  Sum_probs=81.8

Q ss_pred             cceeeeccCCCeEEEEeecCCCChhhhhhhhhc-------CCCHHHHH--HHHHHHHHHHHHhCCccccCCCCCcEEEee
Q 004254          399 VPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-------GVDRKRLG--RYAVESYLEQILSHGFFHADPHPGNIAVDD  469 (765)
Q Consensus       399 vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~-------g~d~~~ia--~~li~~~L~qi~~~GffHaDpHPGNILV~~  469 (765)
                      |-.|--+.........-+..-+.|..+....+.       .+...++.  ...+...+.++|.+|++|-|+-.-|..|++
T Consensus       352 V~~V~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd  431 (563)
T KOG1024|consen  352 VLGVSIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDD  431 (563)
T ss_pred             eeEEEeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceehh
Confidence            333333333444555666655555554432221       11122332  233455688899999999999999999986


Q ss_pred             cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          470 VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       470 ~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                        .-+++|.|=.+.+.+=|.+-..+-+-    -++-..+|..+.+.-...+...|+++|...+=++
T Consensus       432 --~LqVkltDsaLSRDLFP~DYhcLGDn----EnRPvkWMslEal~n~~yssasDvWsfGVllWEL  491 (563)
T KOG1024|consen  432 --QLQVKLTDSALSRDLFPGDYHCLGDN----ENRPVKWMSLEALQNSHYSSASDVWSFGVLLWEL  491 (563)
T ss_pred             --heeEEeccchhccccCcccccccCCC----CCCcccccCHHHHhhhhhcchhhhHHHHHHHHHH
Confidence              67999999999988776654433110    1233456666666666677888999988655443

>PTZ00296 choline kinase; Provisional

Probab=92.64  E-value=1.6  Score=50.44  Aligned_cols=33  Identities=27%  Similarity=0.212  Sum_probs=26.9

Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (765)
                      ..+.|.|+.++||+..   ++.+.||||=.++.=++
T Consensus       284 ~VfCHNDl~~~NiL~~---~~~l~LIDfEYAg~ndp  316 (442)
T PTZ00296        284 IVFCHNDLQENNIINT---NKCLRLIDFEYSGYNFL  316 (442)
T ss_pred             eeEEeCCCCccceeec---CCCEEEEeecccccccH
Confidence            3589999999999875   45699999988886554

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=92.20  E-value=0.094  Score=56.40  Aligned_cols=33  Identities=24%  Similarity=0.263  Sum_probs=27.3

Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccC
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS  487 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~  487 (765)
                      ..|++|+|+|++||+++   ++.+.++||+.+..-.
T Consensus       186 ~~~liHgD~~~~Nil~~---~~~i~lIDfd~~~~~~  218 (313)
T TIGR02906       186 IRGFCHQDYAYHNILLK---DNEVYVIDFDYCTIDL  218 (313)
T ss_pred             cCceEcCCCCcccEEEe---CCcEEEEECcccccCC
Confidence            36899999999999997   3678999999776433

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=92.14  E-value=0.38  Score=48.96  Aligned_cols=86  Identities=21%  Similarity=0.276  Sum_probs=54.7

Q ss_pred             ccceeeeccCCCeEEEEeecCCCChhhh----hhhhhcC-CCHHHHHHHHHHHHHHHHHh---CCccccCCCCCcEEEee
Q 004254          398 KVPTIFWEYTTPQILTMEYVPGIKINRI----QSLDELG-VDRKRLGRYAVESYLEQILS---HGFFHADPHPGNIAVDD  469 (765)
Q Consensus       398 ~vP~vy~e~st~~vLVMEyieG~~L~d~----~~l~~~g-~d~~~ia~~li~~~L~qi~~---~GffHaDpHPGNILV~~  469 (765)
                      ++|+++. .| .++.++||+..+++...    ....... ..+.++|..+++.. +.+..   ..|.-+|.+|+|+-|++
T Consensus        21 ~~pk~lG-~C-G~~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l-~~l~~~~~~~~~lcDv~~~nfgv~~   97 (188)
T PF12260_consen   21 PFPKLLG-SC-GRFYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELL-EELDHGPLGFFYLCDVSPDNFGVND   97 (188)
T ss_pred             CCCCeee-EC-CCEEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHH-HHHhcCCCCcEEEeecchHHeEEeC
Confidence            7999985 34 45779999997755321    1111111 12334444444433 22222   34788999999999986


Q ss_pred             cCCCcEEEEeecceeccCh
Q 004254          470 VNGGRLIFYDFGMMGSISP  488 (765)
Q Consensus       470 ~~~g~l~LiDFGlv~~L~~  488 (765)
                        +|+++++|...+...+.
T Consensus        98 --~~~lk~iDld~v~~~~~  114 (188)
T PF12260_consen   98 --DGRLKLIDLDDVFVEDK  114 (188)
T ss_pred             --CCcEEEEechhcchhHH
Confidence              88999999988876644

Proteins in this uncharacterised family are described as transmembrane proteins.

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=90.94  E-value=0.17  Score=51.55  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=30.6

Q ss_pred             hCCccccCCCCCcEEEeecCCC---cEEEEeecceeccChh
Q 004254          452 SHGFFHADPHPGNIAVDDVNGG---RLIFYDFGMMGSISPN  489 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g---~l~LiDFGlv~~L~~~  489 (765)
                      ...+.|+|+|++|+++...++|   .+.++||..++.-++.
T Consensus       119 ~~vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~~g~p~  159 (196)
T smart00587      119 FNVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYGSPA  159 (196)
T ss_pred             ceEEeeCCCCccceeeccCCCCCccceEEEecccCCcCChH
Confidence            3568999999999999852233   6999999999987764

subfamily of choline kinases

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=89.49  E-value=0.058  Score=64.33  Aligned_cols=118  Identities=20%  Similarity=0.204  Sum_probs=70.4

Q ss_pred             cCCCeEEEEeecCCCChhhhh-hhhhcCCCHHH--HHHHHHHHHHHHHH-hCCccccCCCCCcEEEeecCCC-cEEEEee
Q 004254          406 YTTPQILTMEYVPGIKINRIQ-SLDELGVDRKR--LGRYAVESYLEQIL-SHGFFHADPHPGNIAVDDVNGG-RLIFYDF  480 (765)
Q Consensus       406 ~st~~vLVMEyieG~~L~d~~-~l~~~g~d~~~--ia~~li~~~L~qi~-~~GffHaDpHPGNILV~~~~~g-~l~LiDF  480 (765)
                      .....++.+||.+|+.+.+.. .-+-.+.+...  ..-.-...-+..+| ..|+.|+|++|.|.+++.  .+ .++..||
T Consensus        92 ~~~~~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~--s~~~l~~~df  169 (601)
T KOG0590|consen   92 SPRSYLLSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDE--SGSALKIADF  169 (601)
T ss_pred             CCcccccccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcccccccCCCCCccchhcc--CCCcccCCCc
Confidence            355679999999999887754 22211222111  11111222245566 789999999999999986  56 8999999


Q ss_pred             cceeccCh-hhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHH
Q 004254          481 GMMGSISP-NIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAV  528 (765)
Q Consensus       481 Glv~~L~~-~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l  528 (765)
                      |++..+.. .........-.+   .++.++++++..- +...+..|.+..
T Consensus       170 ~~At~~~~~~g~~~~~~~~~g---~s~~y~a~E~~~~~~~~~~~~d~~S~  216 (601)
T KOG0590|consen  170 GLATAYRNKNGAERSLKDRCG---SSPPYGAPEHLSGKAYRGPSVDVWSL  216 (601)
T ss_pred             hhhccccccCCcceeeecccC---CCCCCCCcccccchhhcCCCcccccc
Confidence            99988776 322222211111   2666666655433 334445555443

>PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function

Probab=89.19  E-value=0.61  Score=49.98  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=29.7

Q ss_pred             CccccCCCCCcEEEeecCCC---cEEEEeecceeccChh
Q 004254          454 GFFHADPHPGNIAVDDVNGG---RLIFYDFGMMGSISPN  489 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g---~l~LiDFGlv~~L~~~  489 (765)
                      -+.|||+|++|||+...++|   .++++||-+++.-++-
T Consensus       216 vl~HGD~w~nNilf~~~~~g~~~~~~liDfQ~~~~g~p~  254 (294)
T PF02958_consen  216 VLCHGDFWTNNILFKYDDDGKPIDVVLIDFQLARYGSPA  254 (294)
T ss_pred             EEEcCccCHHhEeEccccccccccceeeccccccCCCcH
Confidence            37999999999999863344   6999999999877763

All known members of this group are proteins from drosophila and Caenorhabditis elegans.

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=88.78  E-value=0.19  Score=51.30  Aligned_cols=35  Identities=31%  Similarity=0.562  Sum_probs=23.3

Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (765)
                      ..+.|.|++||||++.. .++++.||||-.++.-++
T Consensus       143 ~v~cHnDl~~~Nil~~~-~~~~~~lIDfEya~~n~~  177 (211)
T PF01633_consen  143 LVFCHNDLNPGNILINN-KDGEVKLIDFEYAGYNDR  177 (211)
T ss_dssp             EEEE-S--SGGGEEETS-SSSCEEE--GTT-EEEEH
T ss_pred             ceEeeccCccccEEecc-CCCeEEEecHHHHhhccc
Confidence            46899999999999932 378999999999887654

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=85.32  E-value=0.62  Score=50.14  Aligned_cols=33  Identities=33%  Similarity=0.553  Sum_probs=28.5

Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (765)
                      =+.|+|++|+|++.++  .|++.||||=-++.=++
T Consensus       154 v~cH~Dl~~~N~l~t~--~~~l~LIDWEyAg~~D~  186 (269)
T COG0510         154 VPCHNDLNPGNLLLTD--KGGLFLIDWEYAGLNDP  186 (269)
T ss_pred             eeecCCCCccceEEcC--CCcEEEEecccCCCccH
Confidence            5899999999999984  69999999988776555

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=83.85  E-value=0.56  Score=50.98  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=28.8

Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccC
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS  487 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~  487 (765)
                      ..|++|+|++++|+++++  ++.+.++||-.+..=.
T Consensus       195 ~~~lcHgD~~~~Nvl~~~--~~~~~iIDfd~~~~d~  228 (309)
T TIGR02904       195 RTVLVHGKLSLSHFLYDE--TRGGYFINFEKASFAS  228 (309)
T ss_pred             ceeeeCCCCcHHhEEEcC--CCCEEEEEhhhcccCC
Confidence            458999999999999975  7789999999887543

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=80.92  E-value=3.9  Score=47.63  Aligned_cols=123  Identities=16%  Similarity=0.116  Sum_probs=75.1

Q ss_pred             CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhC-CccccCCCCCcEEEeecCCCcEEEEeeccee
Q 004254          408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVES--YLEQILSH-GFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  484 (765)
Q Consensus       408 t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~--~L~qi~~~-GffHaDpHPGNILV~~~~~g~l~LiDFGlv~  484 (765)
                      ..-+.+-+||.-++|.|+......+.|..-....+-+.  -+..+|.- ..+|+-+++.|.+++.  .-.+++.|||+-.
T Consensus        20 ~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nClvd~--~w~lklt~~Gl~~   97 (484)
T KOG1023|consen   20 PEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSNCLVDS--RWVLKLTDFGLNS   97 (484)
T ss_pred             CceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhcCcceeeeeeccccceeee--eEEEEechhhhcc
Confidence            45578899999999999876655566654433332222  35556643 3499999999999986  6789999999988


Q ss_pred             ccChhh-HHHHHHHHHHHhhcCHHHHHHHHHHcC-------CCCCCCCHHHHHHHHHHHHH
Q 004254          485 SISPNI-REGLLEAFYGIYEKDADKVLQAMVQMG-------VLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       485 ~L~~~~-r~~l~~l~~ai~~~D~~~i~~~l~~lG-------~~~~~~D~~~l~~~~~~~l~  537 (765)
                      ...+.. .........+..     +.+++++...       ..+..+|.+++.-.+++++.
T Consensus        98 ~~~~~~~~~~~~~~~~~~l-----w~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~  153 (484)
T KOG1023|consen   98 LLEETAEPEAHHPIRKALL-----WTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILF  153 (484)
T ss_pred             cccccccccccchhHHHHh-----ccCHHHhcccccccccccccccCCeehHHHHHHHHHh
Confidence            774200 000000001111     1223333321       13556899999877766654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	765
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	1e-06
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.0 bits (178), Expect = 2e-13
 Identities = 92/626 (14%), Positives = 183/626 (29%), Gaps = 188/626 (30%)

Query: 30  LSKQ-SLYRSF----LYKNYPRCNLGRRIRVAA-GKQDGSVVVEEKREPEFIKGLNDFEV 83
           LSKQ  + + F    L  NY    L   I+         + +  E+R+  +    ND +V
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMTRMYIEQRDRLY----NDNQV 125

Query: 84  NGNGSASRSDSVGSVNGGVNGYANGSLVKYVNGNGNGG---VAVEVVGQVEEEEKLNKEI 140
               + SR      +   +        V  ++G    G   VA++V    + + K++ +I
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 141 ERKKKVEEIGKEDAWFKKSGQEKVEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFVFRA 200
                          F                 W   K  ++ +  LE+   +   +++ 
Sbjct: 185 ---------------F-----------------WLNLKNCNSPETVLEM---LQKLLYQI 209

Query: 201 WLN-----NQKFSYRGGMTEEKKVLRRKALAKWLKESILRL----GPTFIK---IGQQ-- 246
             N     +   + +  +   +  LRR   +K  +  +L L             +  +  
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 247 FSTR----VDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDV-FERFDVEPI 301
            +TR     D L+      +S L         +   S++ + L     D+  E     P 
Sbjct: 270 LTTRFKQVTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 302 AAASLG---QVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKR 358
             + +    +   A     +    V    L  + +  L  L          +P       
Sbjct: 329 RLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVL----------EPA------ 369

Query: 359 DWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPT----IFW---EYTTPQI 411
           ++  ++D  +                 +F  +        +PT    + W     +   +
Sbjct: 370 EYRKMFDRLS-----------------VFPPS------AHIPTILLSLIWFDVIKSDVMV 406

Query: 412 LTME----------------YVPGIKIN-RIQSLDELGVDRKRLGRYAVESYLEQ----- 449
           +  +                 +P I +  +++  +E  + R  +  Y +    +      
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Query: 450 ------ILSHGFFH---ADPHPGNIAVDDVNGGRLIFYDFGMMG------SISPNIREGL 494
                   SH   H    +        + +   R++F DF  +       S + N    +
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHP------ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520

Query: 495 LEA-----FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKE 549
           L       FY  Y  D D   + +V                    FL   EE L    K 
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLV---------------NAILDFLPKIEENL-ICSKY 564

Query: 550 REITTQELGFKKPLSKEEKIEKKKQR 575
            ++    L  +     EE   K+ QR
Sbjct: 565 TDLLRIALMAEDEAIFEEA-HKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 1e-11
 Identities = 67/484 (13%), Positives = 127/484 (26%), Gaps = 174/484 (35%)

Query: 253 ILAQEYVDELSELQDQVPP----F------PSETAVSIVEEELGAPLDDVFERFDVEPIA 302
           IL++E +D +   +D V      F        E     VEE L      +      E   
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104

Query: 303 AASLGQVH---RARLKGE-EVVVK--VQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGA 356
            + + +++   R RL  + +V  K  V R             LR   + L ++ P     
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP-------YLKLR---QALLELRPA---- 150

Query: 357 KRDWVAIY--DECA-SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILT 413
               V I        + +        +   +                 IFW       L 
Sbjct: 151 --KNVLIDGVLGSGKTWV------ALDVCLSYKVQCKMDF-------KIFW-------LN 188

Query: 414 MEYV--PGIKINRIQSL-------DELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGN 464
           ++    P   +  +Q L            D     +  + S ++  L      + P+   
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRR-LLKSKPYENC 246

Query: 465 IAV-DDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTG 523
           + V  +V                +         AF        +      +   +L+ T 
Sbjct: 247 LLVLLNVQ---------------NAKA----WNAF--------N------LSCKILLTTR 273

Query: 524 DTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDL 583
                      FL+      AA      +    +      + +E             + L
Sbjct: 274 FKQVTD-----FLS------AATTTHISLDHHSMTL----TPDE------------VKSL 306

Query: 584 LAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAK--PYAMELLKFREAGVE 641
           L                       LD   + L PR    E+    P  + ++        
Sbjct: 307 LL--------------------KYLDCRPQDL-PR----EVLTTNPRRLSIIAES----- 336

Query: 642 VILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLQGDLKLRVRTLESERAFQRVAAV 701
             ++D    WD         ++  +  +KL   I+     L+      E  + F R++  
Sbjct: 337 --IRDGLATWDN--------WKHVN-CDKLTTIIESSLNVLE----PAEYRKMFDRLSVF 381

Query: 702 QKTV 705
             + 
Sbjct: 382 PPSA 385

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 4e-06
 Identities = 53/456 (11%), Positives = 119/456 (26%), Gaps = 140/456 (30%)

Query: 1   MASCSCSSSLALPELRF---LSPKAASR--------YHLSLSKQSLYRSFLYKNYPRCNL 49
           + +C+   ++     +    + P   SR          +   +  L R    K Y  C L
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 50  GRRIRVAAGKQDGSVVVEEKREPEFIKGLNDFEVNGNGSASRSDSVGSVNGGVNGYANGS 109
                          V+   +  +       F ++      +   + +    V  + + +
Sbjct: 249 ---------------VLLNVQNAKAWNA---FNLS-----CKI-LLTTRFKQVTDFLSAA 284

Query: 110 LVKYVNGNGNGGVAVEVVGQVEEEEKLNKEIERKKKVEEIGKEDAWFKKSGQE--KVEVS 167
              ++               +  +E     +  K           +     Q+  +  ++
Sbjct: 285 TTTHI-------SLDHHSMTLTPDEVK--SLLLK-----------YLDCRPQDLPREVLT 324

Query: 168 VAP-------------GGRWSRFKTY------STIQRTLEIWG-------FVLTFVFRA- 200
             P                W  +K        + I+ +L +         F    VF   
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 201 -----------WLNNQKFSYRGGMTEEKKVLRRKALAKWLKESILRLGPTFIKIGQQFST 249
                      W +         M    K+ +   + K  KES + +   ++++  +   
Sbjct: 385 AHIPTILLSLIWFDV---IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 250 RVDI---LAQEY-VDELSELQDQVPPFPSETAVSIVEEELGAPLDDVF------------ 293
              +   +   Y + +  +  D +PP                 LD  F            
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPP----------------YLDQYFYSHIGHHLKNIE 485

Query: 294 --ERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP 351
             ER  +  +       +   +++ +          L  L    LK  +    Y+   DP
Sbjct: 486 HPERMTLFRMVFLDFRFL-EQKIRHDSTAWNASGSILNTL--QQLKFYK---PYICDNDP 539

Query: 352 KSDGAKRDWVAIYDECASVLY--QEIDYTQEAANAE 385
           K +      +    +    L   +  D  + A  AE
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT} Length = 312

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 26/242 (10%), Positives = 68/242 (28%), Gaps = 22/242 (9%)

Query: 281 VEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLR 340
           + + L       +     E + +  + ++     + + V VK+     + +F  +   L 
Sbjct: 24  ISQVLAEQFGAYYFIKHKEKLYSGEMNEIWLINDEVQTVFVKINERSYRSMFRAEADQLA 83

Query: 341 VIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
           ++A+      P                  +L        + ++  +FA     +  ++ P
Sbjct: 84  LLAKTNSINVPLV----YGIGNSQGHSFLLLEALNKSKNKQSSFTIFAEKIAQLHQIQGP 139

Query: 401 TIF-WEY-----TTPQILTME--YVPGIKINRIQSLDELGVDR--KRLGRYAVESYLEQI 450
             +  ++        Q    +  +      NRI    ++  ++         +   +   
Sbjct: 140 DKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIVADT 199

Query: 451 LSH-----GFFHADPHPGNIAVDD---VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIY 502
           LS         H +    N    D          ++          ++ E     FY  Y
Sbjct: 200 LSKHNPKPSILHGNLWIENCIQVDDKIFVCNPACYWGDRECDIAFSSLFEPFPTNFYQRY 259

Query: 503 EK 504
            +
Sbjct: 260 NE 261

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 42.2 bits (98), Expect = 4e-04
 Identities = 34/215 (15%), Positives = 60/215 (27%), Gaps = 29/215 (13%)

Query: 298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDID--LKNLRVIAE--YLQKIDPKS 353
            E I     G+V +       V +K+      DL +         ++ E    +++   S
Sbjct: 25  CEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLS 84

Query: 354 DGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILT 413
                         +    Q   Y      A    ++ K     + P  F +     +L 
Sbjct: 85  GEVCNRTEGFIGLNSVHCVQG-SYPPLLLKAWDHYNSTKGSANDR-PDFFKDDQLFIVLE 142

Query: 414 MEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL--------SHGFFHADPHPGNI 465
            E+           +D   +  K       +S L Q+         S  F H D H GN+
Sbjct: 143 FEF---------GGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNV 193

Query: 466 AVDDVNGGRLIF------YDFGMMGSISPNIREGL 494
            +   +  +L +            G     I   L
Sbjct: 194 LLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTL 228

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	765
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.93
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.83
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.82
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.8
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.79
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.79
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.79
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.79
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.78
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.78
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.78
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.77
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.77
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.76
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.76
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.73
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.73
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.73
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.72
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.71
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.7
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.69
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.69
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.68
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.68
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.67
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.67
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.66
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.65
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.65
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.65
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.64
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.64
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.64
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.64
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.64
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.64
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.63
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.63
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.63
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.62
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.62
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.61
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.61
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.61
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.61
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.61
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.61
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.61
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.61
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.61
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.6
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.6
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.6
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.59
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.59
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.59
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.59
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.59
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.59
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.59
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.59
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.59
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.59
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.59
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.59
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.59
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.59
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.59
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.58
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.58
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.58
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.58
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.58
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.58
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.58
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.58
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.58
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.58
3niz_A	311	Rhodanese family protein; structural genomics, str	99.57
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.57
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.57
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.57
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.57
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.57
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.57
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.57
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.57
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.57
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.57
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.56
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.56
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.56
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.56
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.56
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.56
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.56
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.56
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.56
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.56
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.56
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.56
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.56
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.56
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.56
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.56
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.56
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.56
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.56
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.56
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.55
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.55
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.55
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.55
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.55
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.55
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.55
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.55
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.55
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.55
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.55
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.55
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.55
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.55
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.55
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.55
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.55
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.55
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.55
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.55
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.55
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.54
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.54
3bhy_A	283	Death-associated protein kinase 3; death associate	99.54
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.54
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.54
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.54
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.54
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.54
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.54
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.54
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.54
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.54
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.54
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.54
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.53
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.53
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.53
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.53
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.53
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.53
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.53
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.53
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.53
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.53
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.53
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.53
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.53
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.53
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.53
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.53
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.52
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.52
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.52
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.52
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.52
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.52
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.52
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.52
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.52
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.52
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.52
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.52
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.51
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.51
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.51
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.51
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.51
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.51
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.51
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.51
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.51
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.51
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.5
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.5
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.5
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.5
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.5
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.5
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.5
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.5
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.5
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.5
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.5
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.5
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.5
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.5
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.5
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.5
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.5
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.49
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.49
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.49
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.49
3uqc_A	286	Probable conserved transmembrane protein; structur	99.49
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.49
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.49
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.49
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.49
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.48
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.48
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.48
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.48
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.48
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.48
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.48
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.48
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.47
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.47
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.47
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.47
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.47
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.47
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.47
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.47
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.47
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.47
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.47
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.46
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.46
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.46
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.46
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.46
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.45
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.45
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.45
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.45
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.45
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.45
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.44
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.44
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.43
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.43
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.43
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.42
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.41
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.41
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.4
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.4
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.4
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.38
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.36
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.36
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.33
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.3
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.22
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.13
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.95
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.89
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.88
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.75
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.7
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	98.68
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.64
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.51
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	98.42
3ats_A	357	Putative uncharacterized protein; hypothetical pro	98.42
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.39
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	98.39
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	98.32
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	98.17
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	98.15
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	98.08
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	98.01
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	97.93
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	97.85
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	97.69
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	97.65
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	97.23
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	97.21
3mes_A	424	Choline kinase; malaria, structural genomics, stru	97.19
1cja_A	342	Protein (actin-fragmin kinase); transferase; HET:	88.27

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.93  E-value=3.2e-26  Score=249.62  Aligned_cols=264  Identities=14%  Similarity=0.093  Sum_probs=148.1

Q ss_pred             HHHHHHHHHHHhhCCcch-hhhHHHhhCccCCCHHHHHHHHhhhhCCCCCChHHHHHHHHHHhCCChhhhhcccCc----
Q 004254          224 ALAKWLKESILRLGPTFI-KIGQQFSTRVDILAQEYVDELSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDV----  298 (765)
Q Consensus       224 ~~a~~lr~~l~~LGptfI-KlGQ~lStR~DllP~e~~~eL~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~----  298 (765)
                      ..|+++.+.+.+|++.++ +++|.+...++..+ +++.+++++||.+||.+++.+...++.+++.+..+.|..|..    
T Consensus        20 ~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~   98 (365)
T 2y7j_A           20 RRARREIRHLPNLNREQRRAFIRSLRDDPSQSA-NLLAEAKKLNDAQPKGTENLYFQSMGPEDELPDWAAAKEFYQKYDP   98 (365)
T ss_dssp             ---------------------------------------------------------------CBCHHHHHHHHHHHEEE
T ss_pred             HHHHHHHhcCccchhcccccccccccCCCchhH-HHHHHHHhhhhcCCCCccccccccCCchhhcccchhhhhhhhhccc
Confidence            458889999999999998 99999988887665 566789999999999999999999999999998888887765    


Q ss_pred             -ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          299 -EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       299 -~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                       ++||+|++|+||+|++  +|+.||||+++++.......|+                            +++.+.+.+|+
T Consensus        99 ~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~----------------------------~~~~~~~~~E~  150 (365)
T 2y7j_A           99 KDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQL----------------------------EEVREATRRET  150 (365)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHH----------------------------HHHHHHHHHHH
T ss_pred             ceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHH----------------------------HHHHHHHHHHH
Confidence             8999999999999999  5999999999887654322222                            23333444454


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      ++.      .++    .++++|..+..+++.++..+|||||++|++|.++... ...++...+...+  +-..+..+|..
T Consensus       151 ~~l------~~l----~~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~-~~~l~~~~~~~i~~qi~~~L~~LH~~  219 (365)
T 2y7j_A          151 HIL------RQV----AGHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTE-KVALSEKETRSIMRSLLEAVSFLHAN  219 (365)
T ss_dssp             HHH------HHH----TTCTTBCCEEEEEEBSSEEEEEECCCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHH------HHh----cCCCCEeEEEEEEeeCCEEEEEEEeCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            443      333    2457787788888888899999999999999987642 2334544443333  22347888999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC------CCCCCCCHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG------VLVPTGDTTA  527 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG------~~~~~~D~~~  527 (765)
                      |++|+||||+||++++  +|+++|+|||+++.+++....       ....+++.++++++...+      ..++..|+++
T Consensus       220 gi~H~Dlkp~NIl~~~--~~~ikl~DfG~~~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~s  290 (365)
T 2y7j_A          220 NIVHRDLKPENILLDD--NMQIRLSDFGFSCHLEPGEKL-------RELCGTPGYLAPEILKCSMDETHPGYGKEVDLWA  290 (365)
T ss_dssp             TEECSCCSGGGEEECT--TCCEEECCCTTCEECCTTCCB-------CCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHH
T ss_pred             CeecCCCCHHHEEECC--CCCEEEEecCcccccCCCccc-------ccCCCCCCccChhhccccccccCcCCCchhhHHh
Confidence            9999999999999986  899999999999988764321       113467778888887633      3456789999


Q ss_pred             HHHHHHHHH
Q 004254          528 VRRTAQFFL  536 (765)
Q Consensus       528 l~~~~~~~l  536 (765)
                      +...+.+++
T Consensus       291 lG~il~ell  299 (365)
T 2y7j_A          291 CGVILFTLL  299 (365)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            987766654

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.83  E-value=3.1e-21  Score=222.36  Aligned_cols=243  Identities=15%  Similarity=0.096  Sum_probs=169.7

Q ss_pred             hhHHHhhCccCCCH----HHHHHHH---------------------hhhhCCCCCChHHHHHH----HHHHhCCChhhhh
Q 004254          243 IGQQFSTRVDILAQ----EYVDELS---------------------ELQDQVPPFPSETAVSI----VEEELGAPLDDVF  293 (765)
Q Consensus       243 lGQ~lStR~DllP~----e~~~eL~---------------------~Lqd~vpp~p~~~v~~i----ie~elG~~~eeiF  293 (765)
                      +||+++|++|++|+    +.++++.                     ++||++|+++++.+.++    .+..++...++++
T Consensus        72 ~~~f~~t~~~~~~~~~~~~~i~e~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~v~~v~~~~~~~l~~~~~~~~~  151 (543)
T 3c4z_A           72 FQQFLRTHEQHGPALQLWKDIEDYDTADDALRPQKAQALRAAYLEPQAQLFCSFLDAETVARARAGAGDGLFQPLLRAVL  151 (543)
T ss_dssp             HHHHHHHCGGGHHHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHTSTTCTTCCTTSCHHHHHHHHCC---CTTHHHHHHHH
T ss_pred             HHHHHhcCCchhHHHHHHhhhhhhccCchhhHHHHHHHHHHHhhCchhhhhhccCCHHHHhhhhcCCCchhhHHHHHHHH
Confidence            49999999999999    8888888                     79999999998887776    3333333334444


Q ss_pred             cccCc----------------------------------ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHH
Q 004254          294 ERFDV----------------------------------EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLK  337 (765)
Q Consensus       294 ~~fd~----------------------------------~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~  337 (765)
                      ..++.                                  +.||+|++|+||+|+.  +|+.||||+.+......      
T Consensus       152 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~------  225 (543)
T 3c4z_A          152 AHLGQAPFQEFLDSLYFLRFLQWKWLEAQPMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKK------  225 (543)
T ss_dssp             HHHTTHHHHHHHTSHHHHHHHHHHHHHTSCCCGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHH------
T ss_pred             HhhhcCchHhhhhhhhhhhhhhhhhhhcccCChhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhh------
Confidence            43333                                  3499999999999999  59999999874311000      


Q ss_pred             HHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeec
Q 004254          338 NLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYV  417 (765)
Q Consensus       338 il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyi  417 (765)
                                                       ....-.+.+|.+.+.++     ++++|.-...+.+..+..+|||||+
T Consensus       226 ---------------------------------~~~~~~~~~E~~iL~~l-----~hp~Iv~l~~~~~~~~~l~lVmE~~  267 (543)
T 3c4z_A          226 ---------------------------------RKGYQGAMVEKKILAKV-----HSRFIVSLAYAFETKTDLCLVMTIM  267 (543)
T ss_dssp             ---------------------------------TTCHHHHHHHHHHHHHC-----CCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             ---------------------------------hHHHHHHHHHHHHHHhc-----CCCCEeeEEEEEeeCCEEEEEEEec
Confidence                                             00012345566666554     2344444444445556789999999


Q ss_pred             CCCChhhhhhhh---hcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHH
Q 004254          418 PGIKINRIQSLD---ELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIRE  492 (765)
Q Consensus       418 eG~~L~d~~~l~---~~g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~  492 (765)
                      +|++|.+.....   ...++...+...+  +-..+..+|..|++|+|+||+||+++.  +|.++|+|||++..+......
T Consensus       268 ~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~--~g~vkL~DFGla~~~~~~~~~  345 (543)
T 3c4z_A          268 NGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDD--DGNVRISDLGLAVELKAGQTK  345 (543)
T ss_dssp             TTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECT--TSCEEECCCTTCEECCTTCCC
T ss_pred             cCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeC--CCCEEEeecceeeeccCCCcc
Confidence            999998864321   1235544444333  334588899999999999999999986  899999999999987654211


Q ss_pred             HHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 004254          493 GLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       493 ~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l~  537 (765)
                            .....+++.++++++......+...|++++...+.+++.
T Consensus       346 ------~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyellt  384 (543)
T 3c4z_A          346 ------TKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIA  384 (543)
T ss_dssp             ------BCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             ------cccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHh
Confidence                  011246788999999877667778899999887766653

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.82  E-value=3.6e-20  Score=202.40  Aligned_cols=186  Identities=13%  Similarity=0.128  Sum_probs=126.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|+||.||+|+.  +|+.||||+.+..-...                                  +..      -.
T Consensus        30 ~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~----------------------------------~~~------~~   69 (350)
T 4b9d_A           30 QKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSS----------------------------------KER------EE   69 (350)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEEEECTTSCH----------------------------------HHH------HH
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCH----------------------------------HHH------HH
Confidence            6899999999999998  69999999985421100                                  001      13


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcC-CCHHHHHHHH--HHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG-VDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g-~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      +.+|++.+.++.    +..-|.+-.++ +..+..+||||||+|++|.++....... ++...+...+  +-..+..+|..
T Consensus        70 ~~~E~~il~~l~----HpnIV~~~~~~-~~~~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~  144 (350)
T 4b9d_A           70 SRREVAVLANMK----HPNIVQYRESF-EENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDR  144 (350)
T ss_dssp             HHHHHHHHHHCC----CTTBCCEEEEE-EETTEEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCC----CCCCCcEEEEE-EECCEEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            556776666552    22223333333 3356679999999999999876433322 3444443333  33458889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|||+||+|||++.  +|.++|+|||+++.++.....  .    ....+++.+++++++.-.-+++.+|++++.-.+.
T Consensus       145 ~IiHRDlKp~NILl~~--~g~vKl~DFGla~~~~~~~~~--~----~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvily  216 (350)
T 4b9d_A          145 KILHRDIKSQNIFLTK--DGTVQLGDFGIARVLNSTVEL--A----RACIGTPYYLSPEICENKPYNNKSDIWALGCVLY  216 (350)
T ss_dssp             TCEETTCCGGGEEECT--TCCEEECSTTEESCCCHHHHH--H----HHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CeeeccCCHHHEEECC--CCCEEEcccccceeecCCccc--c----cccCCCccccCHHHHCCCCCCcHHHHHHHHHHHH
Confidence            9999999999999986  899999999999998764321  1    1234799999999998766777889999998877


Q ss_pred             HHHH
Q 004254          534 FFLN  537 (765)
Q Consensus       534 ~~l~  537 (765)
                      +++.
T Consensus       217 emlt  220 (350)
T 4b9d_A          217 ELCT  220 (350)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6653

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.80  E-value=3.7e-20  Score=202.06  Aligned_cols=181  Identities=15%  Similarity=0.183  Sum_probs=130.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|+||.||+|+.  +|+.||||+....-.+                            +.        +      .
T Consensus        80 ~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~----------------------------~~--------~------~  117 (346)
T 4fih_A           80 IKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ----------------------------RR--------E------L  117 (346)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCS----------------------------SG--------G------G
T ss_pred             EEeecCcCeEEEEEEECCCCCEEEEEEEecCchh----------------------------HH--------H------H
Confidence            5699999999999999  6999999987321000                            00        0      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~  453 (765)
                      +.+|++.+..+    . +++| .+-.++ +.....+||||||+|++|.++..  ...++...+...+.+  ..+.++|..
T Consensus       118 ~~~Ei~il~~l----~-HpnIV~l~~~~-~~~~~~~ivmEy~~gg~L~~~l~--~~~l~e~~~~~~~~qi~~aL~ylH~~  189 (346)
T 4fih_A          118 LFNEVVIMRDY----Q-HENVVEMYNSY-LVGDELWVVMEFLEGGALTDIVT--HTRMNEEQIAAVCLAVLQALSVLHAQ  189 (346)
T ss_dssp             GHHHHHHHHHC----C-CTTBCCEEEEE-EETTEEEEEECCCTTEEHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhC----C-CCCCCcEEEEE-EECCEEEEEEeCCCCCcHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            34455555444    2 3333 333333 33566799999999999998754  345666555544433  348889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|||+||+|||++.  +|.++|+|||+++.++.....      ..-..+++.+++++++...-+++.+|++++.-.+.
T Consensus       190 ~IiHRDlKp~NILl~~--~g~vKl~DFGla~~~~~~~~~------~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvily  261 (346)
T 4fih_A          190 GVIHRDIKSDSILLTH--DGRVKLSDFGFCAQVSKEVPR------RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVI  261 (346)
T ss_dssp             TEECCCCSGGGEEECT--TCCEEECCCTTCEECCSSSCC------BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHH
T ss_pred             CcccccCCHHHEEECC--CCCEEEecCcCceecCCCCCc------ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHH
Confidence            9999999999999986  899999999999988654211      01135789999999998777788899999998877


Q ss_pred             HHHH
Q 004254          534 FFLN  537 (765)
Q Consensus       534 ~~l~  537 (765)
                      +++.
T Consensus       262 eml~  265 (346)
T 4fih_A          262 EMVD  265 (346)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6653

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.79  E-value=6.9e-20  Score=197.16  Aligned_cols=187  Identities=17%  Similarity=0.195  Sum_probs=129.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|+||+||+|+.  +|+.||||+......                ...                 +..+      .
T Consensus        38 ~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~----------------~~~-----------------~~~~------~   78 (311)
T 4aw0_A           38 KILGEGSFSTVVLARELATSREYAIKILEKRHI----------------IKE-----------------NKVP------Y   78 (311)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHH----------------HHT-----------------TCHH------H
T ss_pred             EEEecccCeEEEEEEECCCCCEEEEEEEEHHHC----------------CCH-----------------HHHH------H
Confidence            6899999999999998  699999999832100                000                 0001      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~-V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      +.+|.+.+.++    . +|+ |.+-.++ +.....+||||||+|++|.++... ...++...+...+  +-..+..+|..
T Consensus        79 ~~~E~~il~~l----~-HpnIv~l~~~~-~~~~~~yivmEy~~gG~L~~~i~~-~~~l~e~~~~~~~~qi~~al~ylH~~  151 (311)
T 4aw0_A           79 VTRERDVMSRL----D-HPFFVKLYFTF-QDDEKLYFGLSYAKNGELLKYIRK-IGSFDETCTRFYTAEIVSALEYLHGK  151 (311)
T ss_dssp             HHHHHHHHTTC----C-CTTBCCEEEEE-ECSSEEEEEECCCTTEEHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhC----C-CCCCCeEEEEE-EeCCEEEEEEecCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            34555544433    2 333 3333333 334567999999999999987532 2335544443333  33458889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|||+||+|||++.  +|.++|+|||+++.+++.......    ....+++.+|+++++.-....+.+|++++.-.+.
T Consensus       152 ~IiHRDlKPeNILl~~--~g~vKl~DFGla~~~~~~~~~~~~----~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvily  225 (311)
T 4aw0_A          152 GIIHRDLKPENILLNE--DMHIQITDFGTAKVLSPESKQARA----NSFVGTAQYVSPELLTEKSACKSSDLWALGCIIY  225 (311)
T ss_dssp             TEECSCCSGGGEEECT--TSCEEECCCTTCEECCTTTTCCCB----CCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHH
T ss_pred             CCccCCCCHHHeEEcC--CCCEEEEEcCCceecCCCCCcccc----cCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHH
Confidence            9999999999999985  899999999999988654322111    1134789999999998777777889999998777


Q ss_pred             HHHH
Q 004254          534 FFLN  537 (765)
Q Consensus       534 ~~l~  537 (765)
                      +++.
T Consensus       226 eml~  229 (311)
T 4aw0_A          226 QLVA  229 (311)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6653

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.79  E-value=2.3e-19  Score=192.77  Aligned_cols=196  Identities=13%  Similarity=0.077  Sum_probs=129.1

Q ss_pred             ChhhhhcccCc-ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHH
Q 004254          288 PLDDVFERFDV-EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE  366 (765)
Q Consensus       288 ~~eeiF~~fd~-~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E  366 (765)
                      .|+=-++++.- +.||+|+||.||+|++++ .||||+.+......                                  +
T Consensus        30 ~Wei~~~~l~l~~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~~~----------------------------------~   74 (307)
T 3omv_A           30 YWEIEASEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTP----------------------------------E   74 (307)
T ss_dssp             CCBCCTTSCCEEEECCCCSSSEEEEEESSS-EEEEEECCCSSCCH----------------------------------H
T ss_pred             CcEEcHHHeEEeeEEeeCCCcEEEEEEECC-cEEEEEEEecCCCH----------------------------------H
Confidence            34333444442 679999999999999866 59999985321100                                  0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee-ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--
Q 004254          367 CASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--  443 (765)
Q Consensus       367 ~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~-e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--  443 (765)
                      .      .-+|.+|++.+.+++     +++|.  +.|. ......+||||||+|++|.+........++.......+.  
T Consensus        75 ~------~~~f~~E~~il~~l~-----HpNIV--~l~g~~~~~~~~iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qi  141 (307)
T 3omv_A           75 Q------FQAFRNEVAVLRKTR-----HVNIL--LFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQT  141 (307)
T ss_dssp             H------HHHHHHHHHHHTTCC-----CTTBC--CEEEEECSSSCEEEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHH
T ss_pred             H------HHHHHHHHHHHHhCC-----CCCEe--eEEEEEECCeEEEEEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHH
Confidence            0      114666776665542     34332  2222 123456999999999999997654444566655544443  


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc---CCCC
Q 004254          444 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM---GVLV  520 (765)
Q Consensus       444 ~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l---G~~~  520 (765)
                      ...+.++|..|++|||+||.|||+++  ++.++|+|||+++.++.......    .....+++.+|+++++..   +.++
T Consensus       142 a~gL~yLH~~~IiHRDlKp~NILl~~--~~~~Ki~DFGla~~~~~~~~~~~----~~~~~GT~~ymAPE~l~~~~~~~y~  215 (307)
T 3omv_A          142 AQGMDYLHAKNIIHRDMKSNNIFLHE--GLTVKIGDFGLATVKSRWSGSQQ----VEQPTGSVLWMAPEVIRMQDNNPFS  215 (307)
T ss_dssp             HHHHHHHHHTTCBCSCCCSSSEEEET--TEEEEECCCSSCBC----------------CCCCTTSCCHHHHHCCSSCCCC
T ss_pred             HHHHHHHHHCCccCCccCHHHEEECC--CCcEEEeeccCceecccCCccee----ecccccCCCccCHHHhhccCCCCCC
Confidence            34588899999999999999999986  88999999999987765332221    122457899999999864   3456


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 004254          521 PTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       521 ~~~D~~~l~~~~~~~l~  537 (765)
                      ..+|++++.-.+.+++.
T Consensus       216 ~ksDVwS~Gvvl~Ellt  232 (307)
T 3omv_A          216 FQSDVYSYGIVLYELMT  232 (307)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             cHHHhHhHHHHHHHHHH
Confidence            67899999987776653

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.79  E-value=8e-20  Score=204.30  Aligned_cols=182  Identities=15%  Similarity=0.181  Sum_probs=130.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|+||.||+|+.  +|+.||||+....-..                            +.        +      .
T Consensus       157 ~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~----------------------------~~--------~------~  194 (423)
T 4fie_A          157 IKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ----------------------------RR--------E------L  194 (423)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEESTTCS----------------------------SG--------G------G
T ss_pred             eEeccCcCcEEEEEEECCCCCEEEEEEEeccchh----------------------------HH--------H------H
Confidence            5799999999999999  6999999988421100                            00        0      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|+..+..+    .+..-|.+-.++ +.....+||||||+|+.|.++..  ...++...+...+.+  ..+.++|..|
T Consensus       195 ~~~Ei~il~~l----~HpnIV~l~~~~-~~~~~~~iVmEy~~gG~L~~~i~--~~~l~e~~~~~~~~qil~aL~ylH~~~  267 (423)
T 4fie_A          195 LFNEVVIMRDY----QHENVVEMYNSY-LVGDELWVVMEFLEGGALTDIVT--HTRMNEEQIAAVCLAVLQALSVLHAQG  267 (423)
T ss_dssp             HHHHHHHHHHC----CCTTBCCEEEEE-EETTEEEEEEECCTTEEHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----CCCCCCceEEEE-EECCEEEEEEeCCCCCcHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34455555444    222223333333 33566799999999999999754  345666655554433  3488899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|||+||+|||++.  +|.++|+|||++..++.....      ..-..+++.+|+++++...-+.+.+|++++.-.+.+
T Consensus       268 IiHRDiKp~NILl~~--~g~vKl~DFGla~~~~~~~~~------~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilye  339 (423)
T 4fie_A          268 VIHRDIKSDSILLTH--DGRVKLSDFGFCAQVSKEVPR------RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIE  339 (423)
T ss_dssp             EECCCCSTTTEEECT--TCCEEECCCTTCEECCSSCCC------BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHH
T ss_pred             eecccCCHHHEEEcC--CCCEEEecCccceECCCCCcc------ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHH
Confidence            999999999999986  899999999999988654211      012357899999999987777888999999988777


Q ss_pred             HHH
Q 004254          535 FLN  537 (765)
Q Consensus       535 ~l~  537 (765)
                      ++.
T Consensus       340 ml~  342 (423)
T 4fie_A          340 MVD  342 (423)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.79  E-value=2.3e-19  Score=191.64  Aligned_cols=217  Identities=15%  Similarity=0.101  Sum_probs=150.4

Q ss_pred             HHhhhhCCCCCChHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHH
Q 004254          262 LSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNL  339 (765)
Q Consensus       262 L~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il  339 (765)
                      ...|.-..|+++++++++.++..++.+....+-++. ++||+|++|+||+|+.  +|+.||||+.++......       
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~-------   86 (321)
T 2c30_A           15 TENLYFQSGVVTHEQFKAALRMVVDQGDPRLLLDSY-VKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRR-------   86 (321)
T ss_dssp             ----------CCHHHHHHHHHTTSCSSCHHHHEEEE-EEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSH-------
T ss_pred             ccceeecCCcCcHHHHHHHHhhccCCCCchhhhhcc-EEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHH-------
Confidence            345666678999999999999888876554433222 4899999999999998  599999999865432210       


Q ss_pred             HHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCC
Q 004254          340 RVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPG  419 (765)
Q Consensus       340 ~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG  419 (765)
                                                         -.+.+|+..+.++     .+++|.-+.-+.......++||||++|
T Consensus        87 -----------------------------------~~~~~E~~~l~~l-----~h~niv~~~~~~~~~~~~~lv~e~~~~  126 (321)
T 2c30_A           87 -----------------------------------ELLFNEVVIMRDY-----QHFNVVEMYKSYLVGEELWVLMEFLQG  126 (321)
T ss_dssp             -----------------------------------HHHHHHHHHHTTC-----CCTTBCCEEEEEEETTEEEEEECCCCS
T ss_pred             -----------------------------------HHHHHHHHHHHhC-----CCCCcceEEEEEEECCEEEEEEecCCC
Confidence                                               0234555555443     234554444455556778999999999


Q ss_pred             CChhhhhhhhhcCCCHHHHHHHHHHH--HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHH
Q 004254          420 IKINRIQSLDELGVDRKRLGRYAVES--YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEA  497 (765)
Q Consensus       420 ~~L~d~~~l~~~g~d~~~ia~~li~~--~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l  497 (765)
                      ++|.++..  ...++...+...+...  .+..+|..|++|+|+||+||+++.  +++++|+|||++..++......    
T Consensus       127 ~~L~~~l~--~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~--~~~~kl~Dfg~~~~~~~~~~~~----  198 (321)
T 2c30_A          127 GALTDIVS--QVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTL--DGRVKLSDFGFCAQISKDVPKR----  198 (321)
T ss_dssp             CBHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECT--TCCEEECCCTTCEECCSSSCCB----
T ss_pred             CCHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECC--CCcEEEeeeeeeeecccCcccc----
Confidence            99998753  3456666555554443  488899999999999999999985  8899999999998876532110    


Q ss_pred             HHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          498 FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       498 ~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                        ....++..++++++...+..++..|++++...+.+++
T Consensus       199 --~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~  235 (321)
T 2c30_A          199 --KSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMV  235 (321)
T ss_dssp             --CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHH
T ss_pred             --ccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHH
Confidence              1124677888899888777778889999987776654

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.78  E-value=1.9e-19  Score=195.74  Aligned_cols=182  Identities=18%  Similarity=0.131  Sum_probs=122.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|+||.||+|+.  +|+.||||+.+.....                                              
T Consensus        64 ~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~----------------------------------------------   97 (336)
T 4g3f_A           64 PRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR----------------------------------------------   97 (336)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC----------------------------------------------
T ss_pred             cEeccCCCeEEEEEEECCCCCEEEEEEECHHHhH----------------------------------------------
Confidence            5699999999999998  6999999998532100                                              


Q ss_pred             HHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~-V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~  453 (765)
                       .+|++.+..    +. +|+ |.+-.++ +.....+||||||+|++|.++... ...++...+...+.+  ..+.++|..
T Consensus        98 -~~E~~il~~----l~-HpnIV~l~~~~-~~~~~~~ivmEy~~gg~L~~~l~~-~~~l~e~~~~~~~~qi~~aL~ylH~~  169 (336)
T 4g3f_A           98 -VEELVACAG----LS-SPRIVPLYGAV-REGPWVNIFMELLEGGSLGQLIKQ-MGCLPEDRALYYLGQALEGLEYLHTR  169 (336)
T ss_dssp             -THHHHTTTT----CC-CTTBCCEEEEE-EETTEEEEEECCCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHHh----CC-CCCCCcEEEEE-EECCEEEEEEeccCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence             123332222    22 233 2232222 234557999999999999997642 233555554444333  348889999


Q ss_pred             CccccCCCCCcEEEeecCCC-cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGG-RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g-~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      |++|||+||+|||++.  +| +++|+|||+++.+.+.....-. .....+.+++.+|+++++.-.-.++.+|++++.-.+
T Consensus       170 ~IiHRDlKp~NILl~~--~g~~vKl~DFGla~~~~~~~~~~~~-~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvil  246 (336)
T 4g3f_A          170 RILHGDVKADNVLLSS--DGSRAALCDFGHALCLQPDGLGKSL-LTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMM  246 (336)
T ss_dssp             TEECSCCCGGGEEECT--TSCCEEECCCTTCEEC-------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHH
T ss_pred             CceecccCHHHEEEeC--CCCEEEEeeCCCCeEccCCCcccce-ecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHH
Confidence            9999999999999985  65 6999999999988754321100 011123579999999999877777888999999887


Q ss_pred             HHHHH
Q 004254          533 QFFLN  537 (765)
Q Consensus       533 ~~~l~  537 (765)
                      .+++.
T Consensus       247 yemlt  251 (336)
T 4g3f_A          247 LHMLN  251 (336)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77653

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.78  E-value=5.3e-19  Score=191.59  Aligned_cols=185  Identities=16%  Similarity=0.083  Sum_probs=120.9

Q ss_pred             ccccccceeEEEEEEe-------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||+|+||.||+|++       +|+.||||+.+..-.+.                                        
T Consensus        47 ~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~----------------------------------------   86 (329)
T 4aoj_A           47 WELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESA----------------------------------------   86 (329)
T ss_dssp             EEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHH----------------------------------------
T ss_pred             EEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHH----------------------------------------
Confidence            5799999999999986       27899999985321100                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh--------------cCCCHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE--------------LGVDRKR  437 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~--------------~g~d~~~  437 (765)
                        .-+|.+|++.+.+++     +++|.--.-+.......+||||||+|++|.++.....              ..++...
T Consensus        87 --~~~f~~E~~il~~l~-----HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~  159 (329)
T 4aoj_A           87 --RQDFQREAELLTMLQ-----HQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQ  159 (329)
T ss_dssp             --HHHHHHHHHHHTTCC-----CTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHH
T ss_pred             --HHHHHHHHHHHHhCC-----CCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHH
Confidence              114667776665542     3433222222233456799999999999998753211              1234444


Q ss_pred             HHHHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004254          438 LGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (765)
Q Consensus       438 ia~~li--~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~  515 (765)
                      +...+.  ...+.++|..|++|||+||.|||++.  ++.++|+|||+++.+........    ..-..+.+.+|+++++.
T Consensus       160 ~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~--~~~~Ki~DFGla~~~~~~~~~~~----~~~~~gt~~ymAPE~~~  233 (329)
T 4aoj_A          160 LLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQ--GLVVKIGDFGMSRDIYSTDYYRV----GGRTMLPIRWMPPESIL  233 (329)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEET--TTEEEECCCC--------------------CCCCGGGCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcCCeecccccHhhEEECC--CCcEEEcccccceeccCCCccee----cCcccccccccChhhhc
Confidence            444333  34478899999999999999999986  89999999999988765432221    12234678899999998


Q ss_pred             cCCCCCCCCHHHHHHHHHHHH
Q 004254          516 MGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       516 lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      .+..+...|++++.-.+.+++
T Consensus       234 ~~~~~~~sDvwS~Gvvl~Ell  254 (329)
T 4aoj_A          234 YRKFTTESDVWSFGVVLWEIF  254 (329)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccccccchHHHHHHHH
Confidence            888888889999988776654

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.78  E-value=2.8e-19  Score=192.01  Aligned_cols=186  Identities=13%  Similarity=0.130  Sum_probs=129.0

Q ss_pred             ccccccceeEEEEEEe-------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||+|+||.||+|++       +|+.||||+.++......                                       
T Consensus        32 ~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~---------------------------------------   72 (308)
T 4gt4_A           32 EELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPL---------------------------------------   72 (308)
T ss_dssp             EEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-C---------------------------------------
T ss_pred             eEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHH---------------------------------------
Confidence            4699999999999997       367899999865422110                                       


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRK  436 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~~  436 (765)
                        .-+|.+|+..+.+++     +|+|.--.-+.......+|||||++|++|.++.....               ..++..
T Consensus        73 --~~~f~~E~~il~~l~-----HpNIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~  145 (308)
T 4gt4_A           73 --REEFRHEAMLRARLQ-----HPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPP  145 (308)
T ss_dssp             --HHHHHHHHHHHHHCC-----CTTBCCEEEEECSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHH
T ss_pred             --HHHHHHHHHHHHhCC-----CCCCCCcceEEEECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHH
Confidence              014667777666552     3433222222223456799999999999999763221               224444


Q ss_pred             HHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004254          437 RLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV  514 (765)
Q Consensus       437 ~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~  514 (765)
                      .+...+  +...+.++|..|++|||+||.|||+++  ++.++|+|||+++.+........    ..-..+.+.+++++++
T Consensus       146 ~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~~--~~~~Ki~DFGlar~~~~~~~~~~----~~~~~gt~~ymAPE~l  219 (308)
T 4gt4_A          146 DFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYD--KLNVKISDLGLFREVYAADYYKL----LGNSLLPIRWMAPEAI  219 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECG--GGCEEECCSCCBCGGGGGGCBCS----SSSSCBCGGGCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCccccceEECC--CCCEEECCcccceeccCCCceeE----ecccccCCcccCHHHH
Confidence            444443  334588899999999999999999986  88999999999987755432111    1112467789999999


Q ss_pred             HcCCCCCCCCHHHHHHHHHHHH
Q 004254          515 QMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       515 ~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ..+..+..+|++++.-.+.+++
T Consensus       220 ~~~~~s~ksDVwSfGvvl~El~  241 (308)
T 4gt4_A          220 MYGKFSIDSDIWSYGVVLWEVF  241 (308)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCccchhhhHHHHHHHHH
Confidence            9888888899999998776654

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.77  E-value=1.2e-18  Score=184.41  Aligned_cols=183  Identities=15%  Similarity=0.171  Sum_probs=113.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|+||+||+|+.  +|+.||||+.+......                                 .+.      +-.
T Consensus        19 ~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~---------------------------------~~~------~~~   59 (275)
T 3hyh_A           19 KTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAK---------------------------------SDM------QGR   59 (275)
T ss_dssp             EEEEC---CCEEEEECTTTCCEEEEEEEECC---------------------------------------C------HHH
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCC---------------------------------HHH------HHH
Confidence            6899999999999998  69999999985432110                                 000      113


Q ss_pred             HHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~-V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      +.+|++.+.++.     +|+ |.+-.++ +..+..+|||||++ +.|.+... ....++...+...+.  -..++.+|+.
T Consensus        60 ~~~Ei~il~~l~-----HpnIv~~~~~~-~~~~~~~ivmEy~~-g~L~~~l~-~~~~l~e~~~~~~~~qi~~al~ylH~~  131 (275)
T 3hyh_A           60 IEREISYLRLLR-----HPHIIKLYDVI-KSKDEIIMVIEYAG-NELFDYIV-QRDKMSEQEARRFFQQIISAVEYCHRH  131 (275)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEE-ECSSEEEEEEECCC-EEHHHHHH-HSCSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCC-----CCCCCeEEEEE-EECCEEEEEEeCCC-CCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            455666555542     343 3333333 33566799999995 46666542 223455544443332  2347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~-~~~~~D~~~l~~~~  532 (765)
                      |++|||+||+|||++.  ++.++|+|||++...++....       ....+++.+++++++.-.. ..+.+|++++.-.+
T Consensus       132 ~IiHRDiKP~NILl~~--~~~vkl~DFGla~~~~~~~~~-------~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvil  202 (275)
T 3hyh_A          132 KIVHRDLKPENLLLDE--HLNVKIADFGLSNIMTDGNFL-------KTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVIL  202 (275)
T ss_dssp             TCCCCCCCTTTEEECT--TCCEEECCSSCC----------------------CTTSCHHHHSSSSCCCTHHHHHHHHHHH
T ss_pred             CcccccCChHHeEECC--CCCEEEeecCCCeecCCCCcc-------CCeeECcccCChhhhcCCCCCCChhhhHHHHHHH
Confidence            9999999999999985  899999999999887654321       1134788999999987543 34668999999877


Q ss_pred             HHHHH
Q 004254          533 QFFLN  537 (765)
Q Consensus       533 ~~~l~  537 (765)
                      .+++.
T Consensus       203 y~llt  207 (275)
T 3hyh_A          203 YVMLC  207 (275)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76653

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.77  E-value=1.8e-19  Score=192.86  Aligned_cols=185  Identities=15%  Similarity=0.106  Sum_probs=126.5

Q ss_pred             ccccccceeEEEEEEe-------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||+|+||+||+|++       +|+.||||+.+..-.+                                         
T Consensus        19 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~-----------------------------------------   57 (299)
T 4asz_A           19 RELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDN-----------------------------------------   57 (299)
T ss_dssp             EEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHH-----------------------------------------
T ss_pred             eEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChH-----------------------------------------
Confidence            6799999999999986       2788999988542110                                         


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh------------cCCCHHHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE------------LGVDRKRLG  439 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~------------~g~d~~~ia  439 (765)
                       ..-+|.+|++.+.++    . +|+|.--.-+.......+|||||++|++|.++.....            ..++...+.
T Consensus        58 -~~~~f~~E~~il~~l----~-HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~  131 (299)
T 4asz_A           58 -ARKDFHREAELLTNL----Q-HEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQML  131 (299)
T ss_dssp             -HHHHHHHHHHHHTTC----C-CTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHH
T ss_pred             -HHHHHHHHHHHHHhC----C-CCCCccEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHH
Confidence             011466777666554    2 3433222222233456799999999999999754211            134444444


Q ss_pred             HHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC
Q 004254          440 RYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG  517 (765)
Q Consensus       440 ~~li--~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG  517 (765)
                      ..+.  ...+.++|..|++|||+||.|||++.  ++.++|+|||+++.+........    .....+.+.+|+++.+..+
T Consensus       132 ~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~--~~~~Ki~DFGla~~~~~~~~~~~----~~~~~gt~~ymAPE~~~~~  205 (299)
T 4asz_A          132 HIAQQIAAGMVYLASQHFVHRDLATRNCLVGE--NLLVKIGDFGMSRDVYSTDYYRV----GGHTMLPIRWMPPESIMYR  205 (299)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCSGGGEEECG--GGCEEECCCSCHHHHTGGGCEEE----TTTEEECGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhCCcccCccCHhhEEECC--CCcEEECCcccceecCCCCceee----cCceecChhhcCHHHHcCC
Confidence            4333  33478899999999999999999986  88999999999987655432110    0112367789999999988


Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q 004254          518 VLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       518 ~~~~~~D~~~l~~~~~~~l  536 (765)
                      ..++..|++++.-.+.+++
T Consensus       206 ~~~~k~DVwS~Gvvl~Ell  224 (299)
T 4asz_A          206 KFTTESDVWSLGVVLWEIF  224 (299)
T ss_dssp             CCCHHHHHHHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHH
Confidence            8888899999998776654

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.76  E-value=1.2e-18  Score=186.13  Aligned_cols=190  Identities=14%  Similarity=0.078  Sum_probs=116.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|+||+||+|+.  +|+.||||+.+..-.+.                                   ..+      .
T Consensus        11 ~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~-----------------------------------~~~------~   49 (299)
T 4g31_A           11 QCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNREL-----------------------------------ARE------K   49 (299)
T ss_dssp             EEEEECC--EEEEEEETTTCCEEEEEEEEECSSHH-----------------------------------HHH------H
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHH-----------------------------------HHH------H
Confidence            6899999999999998  69999999873211100                                   011      3


Q ss_pred             HHHHHHHHHHHHHhcCCCCc-cccceeeeccCC-----------CeEEEEeecCCCChhhhhhhhhc--CCCHHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDY-VKVPTIFWEYTT-----------PQILTMEYVPGIKINRIQSLDEL--GVDRKRLGRYA  442 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~-V~vP~vy~e~st-----------~~vLVMEyieG~~L~d~~~l~~~--g~d~~~ia~~l  442 (765)
                      +.+|++.+.++    . +|+ |.+-.++.+-.+           ..+||||||+|++|.++......  ..+...+...+
T Consensus        50 ~~~E~~il~~l----~-HpnIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~  124 (299)
T 4g31_A           50 VMREVKALAKL----E-HPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIF  124 (299)
T ss_dssp             HHHHHHHHTTC----C-CTTBCCEEEEEEEEC----------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHhC----C-CCCCCeEEEEEEecCccccccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHH
Confidence            45566555443    2 233 222222222111           14899999999999987542211  12222222222


Q ss_pred             --HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHH------HHHHHhhcCHHHHHHHHH
Q 004254          443 --VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE------AFYGIYEKDADKVLQAMV  514 (765)
Q Consensus       443 --i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~------l~~ai~~~D~~~i~~~l~  514 (765)
                        +-..+..+|..|++|||+||+|||++.  +|.++|+|||+++.++.........      .-..-..+++.+|+|+++
T Consensus       125 ~qi~~al~ylH~~~IiHRDlKp~NILl~~--~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~  202 (299)
T 4g31_A          125 LQIAEAVEFLHSKGLMHRDLKPSNIFFTM--DDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQI  202 (299)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCGGGEEECT--TCCEEECCCCCC--------------------------CCCTTSCHHHH
T ss_pred             HHHHHHHHHHHHCcCccccCcHHHeEECC--CCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHH
Confidence              334578899999999999999999986  8999999999999887643322110      001112478899999999


Q ss_pred             HcCCCCCCCCHHHHHHHHHHHH
Q 004254          515 QMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       515 ~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      .-...++.+|++++.-.+.+++
T Consensus       203 ~~~~y~~~~DiwSlGvilyell  224 (299)
T 4g31_A          203 HGNSYSHKVDIFSLGLILFELL  224 (299)
T ss_dssp             TTCCCCTHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHc
Confidence            8777788889999998776664

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.76  E-value=2.7e-19  Score=191.96  Aligned_cols=184  Identities=16%  Similarity=0.187  Sum_probs=122.7

Q ss_pred             ccccccceeEEEEEEe-----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||+|+||+||+|+.     +|+.||||+.+......                          .+.             
T Consensus        30 ~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~--------------------------~~~-------------   70 (304)
T 3ubd_A           30 KVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKV--------------------------RDR-------------   70 (304)
T ss_dssp             EEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEE--------------------------EEC-------------
T ss_pred             EEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcCh--------------------------HHH-------------
Confidence            6899999999999986     37899999986532111                          000             


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQI  450 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi  450 (765)
                       ..+.+|++.+.+    +. +|+| .+-.++ +..+..+||||||+|++|.+.... ...++...+...+.  -..+..+
T Consensus        71 -~~~~~E~~il~~----l~-HpnIv~l~~~~-~~~~~~~ivmEy~~gg~L~~~l~~-~~~l~e~~~~~~~~qi~~aL~yl  142 (304)
T 3ubd_A           71 -VRTKMERDILVE----VN-HPFIVKLHYAF-QTEGKLYLILDFLRGGDLFTRLSK-EVMFTEEDVKFYLAELALALDHL  142 (304)
T ss_dssp             -C------CCCCC----CC-CTTEECEEEEE-EETTEEEEEECCCTTCEEHHHHHH-HCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHH----CC-CCCCCeEEEEE-EECCEEEEEEEcCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHH
Confidence             012233332222    22 3332 222333 335667999999999999987542 23455554444333  3348889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      |..|++|||+||+|||++.  +|.++|+|||+++.+......      .....+++.+++++++.....++.+|++++.-
T Consensus       143 H~~~IiHRDlKp~NILl~~--~g~vKl~DFGla~~~~~~~~~------~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGv  214 (304)
T 3ubd_A          143 HSLGIIYRDLKPENILLDE--EGHIKLTDFGLSKESIDHEKK------AYSFCGTVEYMAPEVVNRRGHTQSADWWSFGV  214 (304)
T ss_dssp             HHTTCCCSSCCGGGEEECT--TSCEEEESSEEEEC-----CC------CCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHH
T ss_pred             HHCCCcCCCCCHHHeEEcC--CCCEEecccccceeccCCCcc------ccccccCcccCCHHHhccCCCCCCCcccchHH
Confidence            9999999999999999986  899999999999876443211      11235899999999998887888899999998


Q ss_pred             HHHHHHH
Q 004254          531 TAQFFLN  537 (765)
Q Consensus       531 ~~~~~l~  537 (765)
                      .+.+++.
T Consensus       215 ilyemlt  221 (304)
T 3ubd_A          215 LMFEMLT  221 (304)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8776653

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.73  E-value=2.7e-18  Score=183.01  Aligned_cols=183  Identities=13%  Similarity=0.025  Sum_probs=123.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|+||.||+|+.  +|+.||||+........                                  ...      -.
T Consensus        32 ~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~----------------------------------~~~------~~   71 (290)
T 3fpq_A           32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTK----------------------------------SER------QR   71 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCH----------------------------------HHH------HH
T ss_pred             eEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCH----------------------------------HHH------HH
Confidence            3599999999999998  58999999874321100                                  001      13


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC---CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  451 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s---t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~  451 (765)
                      |.+|++.+.++.    +..-|.+-.++....   ...+||||||+|++|.++... ...++...+...+  +...+..+|
T Consensus        72 ~~~E~~il~~l~----HpnIV~~~~~~~~~~~~~~~~~lvmEy~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~aL~ylH  146 (290)
T 3fpq_A           72 FKEEAEMLKGLQ----HPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKR-FKVMKIKVLRSWCRQILKGLQFLH  146 (290)
T ss_dssp             HHHHHHHHHTCC----CTTBCCEEEEEEEEETTEEEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC----CCCCCcEEEEEeeccCCCcEEEEEEeCCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence            566776665542    222233333332211   225899999999999997542 2334444443333  234578899


Q ss_pred             hCC--ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          452 SHG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       452 ~~G--ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      .+|  ++|||+||+|||++. .+|.++|+|||+++........        ...+++.+|+|++.. +-+++.+|++++.
T Consensus       147 ~~~~~IiHRDlKp~NILl~~-~~g~vKl~DFGla~~~~~~~~~--------~~~GTp~YmAPE~~~-~~y~~~~DiwSlG  216 (290)
T 3fpq_A          147 TRTPPIIHRDLKCDNIFITG-PTGSVKIGDLGLATLKRASFAK--------AVIGTPEFMAPEMYE-EKYDESVDVYAFG  216 (290)
T ss_dssp             TSSSCCCCCCCCGGGEEESS-TTSCEEECCTTGGGGCCTTSBE--------ESCSSCCCCCGGGGG-TCCCTHHHHHHHH
T ss_pred             HCCCCEEecccChhheeEEC-CCCCEEEEeCcCCEeCCCCccC--------CcccCccccCHHHcC-CCCCcHHHHHHHH
Confidence            998  999999999999974 3689999999999765443211        135789999999886 4567888999999


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      -.+.+++
T Consensus       217 vilyell  223 (290)
T 3fpq_A          217 MCMLEMA  223 (290)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776665

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.73  E-value=3.1e-18  Score=187.35  Aligned_cols=187  Identities=16%  Similarity=0.081  Sum_probs=128.7

Q ss_pred             ccccccceeEEEEEEeC-------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||+|+||.||+|++.       ++.||||+.+.+....                                        
T Consensus        70 ~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~----------------------------------------  109 (353)
T 4ase_A           70 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS----------------------------------------  109 (353)
T ss_dssp             EEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHH----------------------------------------
T ss_pred             eEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChH----------------------------------------
Confidence            68999999999999972       3689999885543211                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDR  435 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~-V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~  435 (765)
                       ..-+|.+|++.+.++.    ++++ |.+-.++.+-....+||||||+|++|.++.....               ..++.
T Consensus       110 -~~~~~~~E~~il~~l~----hhpnIV~l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~  184 (353)
T 4ase_A          110 -EHRALMSELKILIHIG----HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTL  184 (353)
T ss_dssp             -HHHHHHHHHHHHHHHC----CCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCH
T ss_pred             -HHHHHHHHHHHHHHcC----CCCcEEEEEEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCH
Confidence             0124566777666663    2232 2232333232345699999999999999764321               11333


Q ss_pred             HHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004254          436 KRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (765)
Q Consensus       436 ~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l  513 (765)
                      ..+....  +...+.++|..|++|||+||.|||+++  ++.++|+|||+++.+.......    ......+.+.+|++++
T Consensus       185 ~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NILl~~--~~~vKi~DFGlar~~~~~~~~~----~~~~~~gt~~ymAPE~  258 (353)
T 4ase_A          185 EHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSE--KNVVKICDFGLARDIYKDPDYV----RKGDARLPLKWMAPET  258 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECG--GGCEEECCCGGGSCTTTCTTSE----EETTEEECGGGCCHHH
T ss_pred             HHHHHHHHHHHHHHHhHhhCCeecCccCccceeeCC--CCCEEECcchhhhhcccCCCce----eeccccccccccCHHH
Confidence            4443333  334478899999999999999999986  8899999999999875432110    0112345678999999


Q ss_pred             HHcCCCCCCCCHHHHHHHHHHHH
Q 004254          514 VQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       514 ~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +.-+..+..+|++++.-.+.+++
T Consensus       259 l~~~~y~~ksDVwS~Gv~l~El~  281 (353)
T 4ase_A          259 IFDRVYTIQSDVWSFGVLLWEIF  281 (353)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHT
T ss_pred             HhcCCCCCcccEeehHHHHHHHH
Confidence            98888888899999987766554

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.73  E-value=1.5e-18  Score=185.46  Aligned_cols=184  Identities=16%  Similarity=0.102  Sum_probs=117.1

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +.||+|+||.||+|+++|+.||||+.+..-.+                                           +..+.
T Consensus         9 ~~iG~G~fG~Vy~~~~~g~~VAvK~l~~~~~~-------------------------------------------~~~~e   45 (303)
T 3hmm_A            9 ESIGKGRFGEVWRGKWRGEEVAVKIFSSREER-------------------------------------------SWFRE   45 (303)
T ss_dssp             EEEEECSSSEEEEEEETTEEEEEEEECGGGHH-------------------------------------------HHHHH
T ss_pred             EEEeeCCCeEEEEEEECCEEEEEEEECccchh-------------------------------------------hHHHH
Confidence            67999999999999999999999987432110                                           00011


Q ss_pred             HHHHHHHHHHHhcCCCCcc-ccceeeeccC---CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004254          379 QEAANAELFASNFKDMDYV-KVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~s---t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~  452 (765)
                      .|...+.    .+. +++| .+-.++.+-.   ...+|||||++|++|.++..  ..+.+.........+  ..+.++|.
T Consensus        46 ~Ei~~~~----~l~-HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gsL~~~l~--~~~l~~~~~~~i~~~ia~gl~ylH~  118 (303)
T 3hmm_A           46 AEIYQTV----MLR-HENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLN--RYTVTVEGMIKLALSTASGLAHLHM  118 (303)
T ss_dssp             HHHHTST----TCC-CTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHH--HCCBCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHh----cCC-CCCCCcEEEEEEecCCCceEEEEEecCCCCCcHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            2222111    122 3332 2222222111   24589999999999999754  344555554444433  34777886


Q ss_pred             C--------CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC------
Q 004254          453 H--------GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV------  518 (765)
Q Consensus       453 ~--------GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~------  518 (765)
                      +        |++|||+||.|||++.  ++.++|+|||+++..+........  ...-..+++.+++++++.-..      
T Consensus       119 ~~~~~~~~~~IiHRDlKp~NILl~~--~~~~Ki~DFGla~~~~~~~~~~~~--~~~~~~GT~~ymAPE~l~~~~~~~~~~  194 (303)
T 3hmm_A          119 EIVGTQGKPAIAHRDLKSKNILVKK--NGTCCIADLGLAVRHDSATDTIDI--APNHRVGTKRYMAPEVLDDSINMKHFE  194 (303)
T ss_dssp             CBCSTTCBCCEECSCCCGGGEEECT--TSCEEECCCTTCEEEETTTTEESC--C-----CCGGGCCHHHHTTCSCTTCHH
T ss_pred             hhhhccCCCCEeeccCCcccEEECC--CCCEEEEeCCCCccccCCCCceee--ecccccccccccCHHHhcccccccCCc
Confidence            6        9999999999999986  899999999999876543211000  001124788999999986432      


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 004254          519 LVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       519 ~~~~~D~~~l~~~~~~~l  536 (765)
                      .++.+|++++.-.+.+++
T Consensus       195 ~~~k~DVwS~Gvvl~El~  212 (303)
T 3hmm_A          195 SFKRADIYAMGLVFWEIA  212 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             cChhHhhhhHHHHHHHHH
Confidence            234578999887776654

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.72  E-value=2e-18  Score=188.24  Aligned_cols=243  Identities=12%  Similarity=0.072  Sum_probs=149.8

Q ss_pred             HhhCccCCCHHHHHHHHhhh-hCCCCCChHHHHHHHHHHhCCChhhhh----------cccC-cccccccceeEEEEEEe
Q 004254          247 FSTRVDILAQEYVDELSELQ-DQVPPFPSETAVSIVEEELGAPLDDVF----------ERFD-VEPIAAASLGQVHRARL  314 (765)
Q Consensus       247 lStR~DllP~e~~~eL~~Lq-d~vpp~p~~~v~~iie~elG~~~eeiF----------~~fd-~~PIgsaSiGQVhrA~l  314 (765)
                      -|+|.|++++++.+++..++ +.+++.+...+...+..++- +.+..+          ..|. .++||+|++|+||+|+.
T Consensus        16 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~y~~~~~lG~G~~g~V~~a~~   94 (377)
T 3byv_A           16 FQGPGDVVIEELFNRIPQANVRTTSEYMQSAADSLVSTSLW-NTGQPFRVESELGERPRTLVRGTVLGQEDPYAYLEATD   94 (377)
T ss_dssp             -CCTTHHHHHHHHHHCGGGCCCSTTC-CHHHHHHHHHHHTC-C-CCEEEEEESSSCCCEEEEEEEEEEEETTEEEEEEEC
T ss_pred             CCCCchHHHHHHHHhCcccccccccccccchhhhhhHHHhc-CCCCcEEEEeecCCCCceEEEcceeecCCCEEEEEEEE
Confidence            36889999999999999999 99999999999888887762 323322          2232 37899999999999997


Q ss_pred             --CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH---HHH--HHHHHHHH
Q 004254          315 --KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID---YTQ--EAANAELF  387 (765)
Q Consensus       315 --~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD---f~~--EA~Nl~rf  387 (765)
                        +|+.||||+.++.....-.                                 ..+.+.+|+.   ...  ...|+.++
T Consensus        95 ~~~~~~vavK~~~~~~~~~~~---------------------------------~~~~~~~E~~~l~~l~~l~hpniv~~  141 (377)
T 3byv_A           95 QETGESFEVHVPYFTERPPSN---------------------------------AIKQMKEEVLRLRLLRGIKNQKQAKV  141 (377)
T ss_dssp             -CCCCEEEEEEEEECC-CCTT---------------------------------HHHHHHHHHHGGGGSTTCCSHHHHHH
T ss_pred             CCCCcEEEEEEEeeccccchH---------------------------------HHHHHHHHHHHHHhccccCCHHHHHH
Confidence              5999999998543111000                                 0011122221   110  11345554


Q ss_pred             HHhcCCCCcc-ccc---eeeeccC-------CCeEEEEeecCCCChhhhhhhh-hcCCCH-----HHHHHH--HHHHHHH
Q 004254          388 ASNFKDMDYV-KVP---TIFWEYT-------TPQILTMEYVPGIKINRIQSLD-ELGVDR-----KRLGRY--AVESYLE  448 (765)
Q Consensus       388 ~~~f~~~~~V-~vP---~vy~e~s-------t~~vLVMEyieG~~L~d~~~l~-~~g~d~-----~~ia~~--li~~~L~  448 (765)
                      ...+.....+ ..+   .......       ...+|||||++ ++|.++.... ....+.     ..+...  .+-..+.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~-g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~  220 (377)
T 3byv_A          142 HLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQ-SNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLA  220 (377)
T ss_dssp             HHCBCCCSEEEECTTSCSEEEC------CEEESEEEEEECCS-EEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhhhhccCCccccccccCCCceEEEEEEEEEeccC-CCHHHHHHhccccccccccccHHHHHHHHHHHHHHHH
Confidence            4322211000 000   0000000       13689999995 5888865422 222211     222111  2234478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-----------
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-----------  517 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-----------  517 (765)
                      .+|..|++|+|+||+|||++.  ++.++|+|||++...+....         ...+ ..++++++...+           
T Consensus       221 ~LH~~~ivHrDikp~NIll~~--~~~~kL~DFG~a~~~~~~~~---------~~~g-~~y~aPE~~~~~~~~~~~~~~~~  288 (377)
T 3byv_A          221 SLHHYGLVHTYLRPVDIVLDQ--RGGVFLTGFEHLVRDGARVV---------SSVS-RGFEPPELEARRATISYHRDRRT  288 (377)
T ss_dssp             HHHHTTEECSCCCGGGEEECT--TCCEEECCGGGCEETTCEEE---------CCCC-TTCCCHHHHHHHTSTHHHHCCEE
T ss_pred             HHHhCCeecCCCCHHHEEEcC--CCCEEEEechhheecCCccc---------CCCC-cCccChhhhcccccccccccccc
Confidence            889999999999999999985  78999999999987654221         1123 566777777665           


Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q 004254          518 VLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       518 ~~~~~~D~~~l~~~~~~~l  536 (765)
                      ..++..|++++...+.+++
T Consensus       289 ~~~~~~DvwSlG~il~ell  307 (377)
T 3byv_A          289 LMTFSFDAWALGLVIYWIW  307 (377)
T ss_dssp             ECCHHHHHHHHHHHHHHHH
T ss_pred             cCChhhhHHHHHHHHHHHH
Confidence            5667789999988776654

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.71  E-value=2.6e-17  Score=176.49  Aligned_cols=220  Identities=14%  Similarity=0.125  Sum_probs=121.7

Q ss_pred             hhCCCCCChHHHHHHHHHHhCCChhhhhcccCc----------ccccccceeEEEEEEeC------CeEEEEEEecCCch
Q 004254          266 QDQVPPFPSETAVSIVEEELGAPLDDVFERFDV----------EPIAAASLGQVHRARLK------GEEVVVKVQRPGLK  329 (765)
Q Consensus       266 qd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~----------~PIgsaSiGQVhrA~l~------G~~VAVKVqrP~i~  329 (765)
                      +++.+.-|.......++...|.++.+.+..|..          +.||+|++|+||+|+..      +..||||+.+++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~   86 (333)
T 1mqb_A            7 HHHHDYDIPTTENLYFQGAMGSDPNQAVLKFTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYT   86 (333)
T ss_dssp             -------------------------------CCBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCC
T ss_pred             ccccccCCCCCccccccccccCChhhhhhhccccCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCC
Confidence            556666677777888888888888887777765          78999999999999982      24699999865432


Q ss_pred             hhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCC
Q 004254          330 DLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTP  409 (765)
Q Consensus       330 ~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~  409 (765)
                      ..                                         .+.++.+|++.+.++     .+++|.-..-+......
T Consensus        87 ~~-----------------------------------------~~~~~~~E~~~l~~l-----~h~~iv~~~~~~~~~~~  120 (333)
T 1mqb_A           87 EK-----------------------------------------QRVDFLGEAGIMGQF-----SHHNIIRLEGVISKYKP  120 (333)
T ss_dssp             HH-----------------------------------------HHHHHHHHHHHHHTC-----CCTTBCCEEEEECSSSS
T ss_pred             HH-----------------------------------------HHHHHHHHHHHHHhC-----CCCCCCcEEEEEecCCC
Confidence            11                                         112455566655544     23333322223334566


Q ss_pred             eEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccC
Q 004254          410 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS  487 (765)
Q Consensus       410 ~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~  487 (765)
                      .+|||||++|++|.++.......++...+...+.+  ..+..+|..|++|+|+||+||+++.  ++.++|+|||++..+.
T Consensus       121 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~--~~~~kl~Dfg~~~~~~  198 (333)
T 1mqb_A          121 MMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNS--NLVCKVSDFGLSRVLE  198 (333)
T ss_dssp             EEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECT--TCCEEECCCCC-----
T ss_pred             cEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECC--CCcEEECCCCcchhhc
Confidence            79999999999999876544344566555544433  3488899999999999999999985  8899999999998876


Q ss_pred             hhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          488 PNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       488 ~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ........   ......+..+++++....+..++..|++++...+.+++
T Consensus       199 ~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell  244 (333)
T 1mqb_A          199 DDPEATYT---TSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVM  244 (333)
T ss_dssp             ---------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred             cccccccc---cCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHH
Confidence            54322211   11112345678888887776777789998887665543

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.70  E-value=6.9e-17  Score=189.37  Aligned_cols=187  Identities=16%  Similarity=0.126  Sum_probs=125.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|+||.||+|+.  +|+.||||+.....   +             ...          +             .+-.
T Consensus       195 k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~---i-------------~~~----------~-------------~~~~  235 (689)
T 3v5w_A          195 RIIGRGGFGEVYGCRKADTGKMYAMKCLDKKR---I-------------KMK----------Q-------------GETL  235 (689)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHH---H-------------HHT----------T-------------CHHH
T ss_pred             EEEecccCeEEEEEEECCCCCEEEEEEEeHHH---c-------------chh----------h-------------hHHH
Confidence            6899999999999999  69999999983210   0             000          0             0001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      ..+|. ++..+.... ++|+|.--.-..+..+..+|||||++|+.|.+.... ...++...+...+  +-..+.++|..|
T Consensus       236 ~~~E~-~~l~ll~~~-~HP~IV~l~~~f~~~~~lylVmEy~~GGdL~~~l~~-~~~l~E~~a~~y~~qIl~aL~yLH~~g  312 (689)
T 3v5w_A          236 ALNER-IMLSLVSTG-DCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQ-HGVFSEADMRFYAAEIILGLEHMHNRF  312 (689)
T ss_dssp             HHHHH-HHHHHHSSS-CCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHH-HHHHHHhhC-CCCCEeEEEEEEEECCEEEEEEecCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            11121 111122222 234332222222334567999999999999886532 2234444433333  334588899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~~~~  533 (765)
                      |+|||+||+|||++.  +|.++|+|||++..++.....        ...+++.+|+++++.-| .....+|.+++.-.++
T Consensus       313 IiHRDLKPeNILld~--~G~vKL~DFGlA~~~~~~~~~--------t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilY  382 (689)
T 3v5w_A          313 VVYRDLKPANILLDE--HGHVRISDLGLACDFSKKKPH--------ASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLF  382 (689)
T ss_dssp             EECCCCSGGGEEECT--TSCEEECCCTTCEECSSCCCC--------SCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHH
T ss_pred             ccccCCchHHeEEeC--CCCEEecccceeeecCCCCCC--------CccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHH
Confidence            999999999999986  899999999999988765321        13589999999999654 4567789999998887


Q ss_pred             HHHH
Q 004254          534 FFLN  537 (765)
Q Consensus       534 ~~l~  537 (765)
                      +++.
T Consensus       383 EmLt  386 (689)
T 3v5w_A          383 KLLR  386 (689)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7764

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.69  E-value=7.7e-17  Score=176.63  Aligned_cols=185  Identities=15%  Similarity=0.130  Sum_probs=119.9

Q ss_pred             ccccccceeEEEEEEe-----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||+|+||+||+|+.     +++.||||+..+.-..                                           
T Consensus        27 ~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~-------------------------------------------   63 (361)
T 4f9c_A           27 DKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHP-------------------------------------------   63 (361)
T ss_dssp             EEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCH-------------------------------------------
T ss_pred             EEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCH-------------------------------------------
Confidence            6799999999999986     3689999987442110                                           


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  450 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~-V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi  450 (765)
                       ..+.+|.+.+..+    .++++ |.+-.++ +.....+|||||++|++|.++..    .++...+...+  +-..+..+
T Consensus        64 -~~~~~E~~~l~~~----~~h~nIv~l~~~~-~~~~~~~lvmE~~~g~~L~~~~~----~l~~~~~~~~~~qll~al~yl  133 (361)
T 4f9c_A           64 -IRIAAELQCLTVA----GGQDNVMGVKYCF-RKNDHVVIAMPYLEHESFLDILN----SLSFQEVREYMLNLFKALKRI  133 (361)
T ss_dssp             -HHHHHHHHHHHHT----CSBTTBCCCSEEE-EETTEEEEEEECCCCCCHHHHHT----TCCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHh----cCCCCCceEEEEE-EECCEEEEEEeCCCcccHHHHHc----CCCHHHHHHHHHHHHHHHHHH
Confidence             0122333333322    22333 3333444 33566799999999999988652    24444433333  23357889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHH----------------HHH------HHHHHhhcCHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG----------------LLE------AFYGIYEKDADK  508 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~----------------l~~------l~~ai~~~D~~~  508 (765)
                      |..|++|||+||+|||++. +.+.++|+|||+++...+..-..                .+.      -...-..+++.+
T Consensus       134 H~~gIiHRDiKPeNiLl~~-~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y  212 (361)
T 4f9c_A          134 HQFGIVHRDVKPSNFLYNR-RLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGF  212 (361)
T ss_dssp             HHTTEECSCCSGGGEEEET-TTTEEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGG
T ss_pred             HHCCeEeCcCCHHHeEEeC-CCCeEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccc
Confidence            9999999999999999985 34899999999998664321000                000      001123478899


Q ss_pred             HHHHHHHcC-CCCCCCCHHHHHHHHHHHHH
Q 004254          509 VLQAMVQMG-VLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       509 i~~~l~~lG-~~~~~~D~~~l~~~~~~~l~  537 (765)
                      ++++++.-. ..+...|++++.-.+.+++.
T Consensus       213 ~APE~l~~~~~y~~~~DiWSlG~il~ell~  242 (361)
T 4f9c_A          213 RAPEVLTKCPNQTTAIDMWSAGVIFLSLLS  242 (361)
T ss_dssp             CCHHHHTTCSCCCTHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHcCCCCCCCccchhhhHHHHHHHHH
Confidence            999987543 45667799999988776653

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.69  E-value=3.5e-17  Score=189.66  Aligned_cols=189  Identities=16%  Similarity=0.236  Sum_probs=129.7

Q ss_pred             cccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      +.|+. +.||.|+||.||+|+.  +|+.||||+.+..-...                                    .+ 
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~------------------------------------~~-  199 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESD------------------------------------KE-  199 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHH------------------------------------HH-
T ss_pred             cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhh------------------------------------HH-
Confidence            34443 6799999999999999  69999999873221000                                    01 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHH
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLE  448 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~  448 (765)
                           .+.+|++.+..+    .+..-|.+-.++ +.....+||||||+|++|.+........++...+...+.  -..++
T Consensus       200 -----~~~~Ei~il~~l----~hpnIv~l~~~~-~~~~~~~iv~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~  269 (573)
T 3uto_A          200 -----TVRKEIQTMSVL----RHPTLVNLHDAF-EDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLC  269 (573)
T ss_dssp             -----HHHHHHHHHHHT----CCTTBCCEEEEE-ECSSEEEEEEECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhC----CCCCCCeEEEEE-EECCEEEEEEeecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence                 233455555444    222223333433 345677999999999999886533333344444433332  23478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      ++|..|++|||+||.|||++....+.++|+|||+++.+++....       ....+++.+++++++...-+....|++++
T Consensus       270 ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~-------~~~~GT~~y~APEv~~~~~y~~~~DiWSl  342 (573)
T 3uto_A          270 HMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV-------KVTTGTAEFAAPEVAEGKPVGYYTDMWSV  342 (573)
T ss_dssp             HHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEE-------EEECSSGGGCCHHHHTTCCBCHHHHHHHH
T ss_pred             HHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCCce-------eeeEECccccCHHHhCCCCCCcHHHHHHH
Confidence            89999999999999999998534589999999999998765321       12347889999999887666677899999


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      .-.+.+++
T Consensus       343 Gvilyeml  350 (573)
T 3uto_A          343 GVLSYILL  350 (573)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87766654

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.68  E-value=4.4e-16  Score=161.98  Aligned_cols=184  Identities=20%  Similarity=0.224  Sum_probs=121.1

Q ss_pred             ccccccceeEEEEEEe--CCeE--EEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEE--VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~--VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      .+||+|++|+||+|+.  +|+.  ||||+.+++....-.        ...++.. .+     .+.+..    ....-..+
T Consensus        53 ~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~--------~~~~~~~-~~-----~~~~~~----~~~~~~~~  114 (258)
T 1zth_A           53 GVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDK--------MDEYLYG-DE-----RFDMRR----ISPKEKVF  114 (258)
T ss_dssp             EEEEECSSEEEEEEEEEETTEEEEEEEEEECCC---------------GGGTTT-CT-----TSCC--------CHHHHH
T ss_pred             CEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhh--------HHHhhcc-cc-----hhhhhc----cChHHHHH
Confidence            6899999999999998  7999  999998776422100        0001000 00     111110    00111234


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecC--C---CChhhhhhhhhcCCCHHHHHHHHHHHHHHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVP--G---IKINRIQSLDELGVDRKRLGRYAVESYLEQ  449 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyie--G---~~L~d~~~l~~~g~d~~~ia~~li~~~L~q  449 (765)
                      ..+.+|++++.++.+     +++.+|.++.  ....+|||||+.  |   ..|.+... .........++..++ ..+..
T Consensus       115 ~~~~~E~~~l~~l~~-----~~i~~p~~~~--~~~~~lVmE~~g~~g~~~~~L~~~~~-~~~~~~~~~i~~qi~-~~l~~  185 (258)
T 1zth_A          115 IWTEKEFRNLERAKE-----AGVSVPQPYT--YMKNVLLMEFIGEDELPAPTLVELGR-ELKELDVEGIFNDVV-ENVKR  185 (258)
T ss_dssp             HHHHHHHHHHHHHHH-----TTCCCCCEEE--EETTEEEEECCEETTEECCBHHHHGG-GGGGSCHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHh-----CCCCCCeEEE--cCCCEEEEEecCCCCCccccHHHHhh-ccChHHHHHHHHHHH-HHHHH
Confidence            467889999998875     3467888885  357899999994  2   25554321 111223445555444 34677


Q ss_pred             HH-hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004254          450 IL-SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (765)
Q Consensus       450 i~-~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~  520 (765)
                      +| ..|++|+|+||+|||++   + +++|+|||++..++......+       ..+|.+.+.+.+..+|+..
T Consensus       186 lH~~~givHrDlkp~NILl~---~-~~~liDFG~a~~~~~~~~~~~-------l~rd~~~~~~~f~~~g~~~  246 (258)
T 1zth_A          186 LYQEAELVHADLSEYNIMYI---D-KVYFIDMGQAVTLRHPMAESY-------LERDVRNIIRFFSKYGVKA  246 (258)
T ss_dssp             HHHTSCEECSSCSTTSEEES---S-SEEECCCTTCEETTSTTHHHH-------HHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHCCEEeCCCCHHHEEEc---C-cEEEEECcccccCCCccHHHH-------HHHHHHHHHHHHHHcCCCC
Confidence            89 99999999999999997   3 899999999998876654332       4678899999998898754

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.68  E-value=6.2e-17  Score=170.55  Aligned_cols=214  Identities=19%  Similarity=0.170  Sum_probs=122.5

Q ss_pred             HHhhhhCCCCCChHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHH
Q 004254          262 LSELQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNL  339 (765)
Q Consensus       262 L~~Lqd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il  339 (765)
                      |+.+|++.||.  ..+++.-++.++....+.|.-  .+.||+|++|.||+|+.  +|+.||||+.+....          
T Consensus         2 l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~y~~--~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~----------   67 (314)
T 3com_A            2 LETVQLRNPPR--RQLKKLDEDSLTKQPEEVFDV--LEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESD----------   67 (314)
T ss_dssp             ------------------------------CEEE--EEECC----CEEEEEEETTTCCEEEEEEEETTSC----------
T ss_pred             ccccccCCCCc--cchhhcCchhhhhcchhhhhh--heeeccCCCeEEEEEEECCCCCEEEEEecCchHH----------
Confidence            56788888873  455666666666665555443  25799999999999999  599999998744210          


Q ss_pred             HHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCC
Q 004254          340 RVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPG  419 (765)
Q Consensus       340 ~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG  419 (765)
                                          ..              ++.+|++.+.++     .++++.-..-+.......++||||++|
T Consensus        68 --------------------~~--------------~~~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~  108 (314)
T 3com_A           68 --------------------LQ--------------EIIKEISIMQQC-----DSPHVVKYYGSYFKNTDLWIVMEYCGA  108 (314)
T ss_dssp             --------------------CH--------------HHHHHHHHHHTC-----CCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred             --------------------HH--------------HHHHHHHHHHhC-----CCCCCccEEEEEEeCCEEEEEeecCCC
Confidence                                00              123344433333     223332222222334567999999999


Q ss_pred             CChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHH
Q 004254          420 IKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEA  497 (765)
Q Consensus       420 ~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l  497 (765)
                      ++|.++.......++...+...+..  ..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+.......    
T Consensus       109 ~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~----  182 (314)
T 3com_A          109 GSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNT--EGHAKLADFGVAGQLTDTMAKR----  182 (314)
T ss_dssp             EEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECT--TCCEEECCCTTCEECBTTBSCB----
T ss_pred             CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECC--CCCEEEeecccchhhhhhcccc----
Confidence            9999976544445665555444433  3478899999999999999999985  8899999999998775432110    


Q ss_pred             HHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          498 FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       498 ~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                        ....++..++++++...+..++..|++++...+.+++
T Consensus       183 --~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~  219 (314)
T 3com_A          183 --NTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMA  219 (314)
T ss_dssp             --CCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHH
T ss_pred             --CccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHH
Confidence              0123566778888887766777889999987766554

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.67  E-value=6.2e-17  Score=177.24  Aligned_cols=192  Identities=16%  Similarity=0.173  Sum_probs=126.0

Q ss_pred             hhhcccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004254          291 DVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (765)
Q Consensus       291 eiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (765)
                      ..|.....+.||.|++|+||+|+.  +|+.||||+.++.-...                                     
T Consensus        87 ~~~~~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~-------------------------------------  129 (373)
T 2x4f_A           87 SFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKD-------------------------------------  129 (373)
T ss_dssp             GTEEEEEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHH-------------------------------------
T ss_pred             cceeeecceEEecCcCEEEEEEEEcCCCcEEEEEEEccccccc-------------------------------------
Confidence            333333457899999999999998  69999999985432110                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHH
Q 004254          369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESY  446 (765)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~  446 (765)
                           .-.+.+|++.+.++     ++++|.-..-+.+.....+|||||++|++|.+........++...+...+  +...
T Consensus       130 -----~~~~~~E~~~l~~l-----~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~a  199 (373)
T 2x4f_A          130 -----KEEVKNEISVMNQL-----DHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEG  199 (373)
T ss_dssp             -----HHHHHHHHHHHTTC-----CCTTBCCEEEEEECSSEEEEEEECCTTCEEHHHHHHTGGGCCHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHhC-----CCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence                 11344555544443     23444333333344566799999999999987654333345554444332  3345


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004254          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (765)
Q Consensus       447 L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~  526 (765)
                      +..+|..|++|+|+||+||++....+++++|+|||++..+.+....       ....+++.++++++...+..+...|++
T Consensus       200 L~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~Diw  272 (373)
T 2x4f_A          200 IRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKL-------KVNFGTPEFLAPEVVNYDFVSFPTDMW  272 (373)
T ss_dssp             HHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBC-------CCCCSSCTTCCHHHHTTCBCCHHHHHH
T ss_pred             HHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcccc-------ccccCCCcEeChhhccCCCCCcHHhHH
Confidence            7889999999999999999996434679999999999987654321       112356778888888777667778999


Q ss_pred             HHHHHHHHHH
Q 004254          527 AVRRTAQFFL  536 (765)
Q Consensus       527 ~l~~~~~~~l  536 (765)
                      ++...+.+++
T Consensus       273 slG~il~ell  282 (373)
T 2x4f_A          273 SVGVIAYMLL  282 (373)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9987766554

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.67  E-value=2.4e-17  Score=182.97  Aligned_cols=189  Identities=17%  Similarity=0.165  Sum_probs=120.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|+||+||+|+.  +|+.||||+.+......                                  ...+      .
T Consensus        60 ~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~----------------------------------~~~~------~   99 (398)
T 4b99_A           60 ETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVV----------------------------------TNAK------R   99 (398)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSH----------------------------------HHHH------H
T ss_pred             EEEecccCeEEEEEEECCCCCEEEEEEECccccch----------------------------------HHHH------H
Confidence            6899999999999998  69999999884321100                                  0011      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec-----cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQ  449 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e-----~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~q  449 (765)
                      +.+|++.+..+.    +..-|.+-.++..     .....+|||||++|. |.++.. ....++...+...+.  -..+.+
T Consensus       100 ~~~Ei~il~~l~----HpnIv~l~~~~~~~~~~~~~~~~~ivmE~~~g~-L~~~i~-~~~~l~~~~~~~~~~qil~al~y  173 (398)
T 4b99_A          100 TLRELKILKHFK----HDNIIAIKDILRPTVPYGEFKSVYVVLDLMESD-LHQIIH-SSQPLTLEHVRYFLYQLLRGLKY  173 (398)
T ss_dssp             HHHHHHHHHHCC----CTTBCCEEEECCCSSCTTTCCCEEEEEECCSEE-HHHHHT-SSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC----CCCcceEeeeeecccccccCCEEEEEEeCCCCC-HHHHHH-hcCCCCHHHHHHHHHHHHHHHHH
Confidence            345555555442    2222333333221     124569999999864 666542 223455544443333  334788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAV  528 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l  528 (765)
                      +|..|++|||+||+|||++.  +|.++++|||+++.+.......-  ....-..+++.+++++++.- ...+..+|++++
T Consensus       174 lH~~~iiHRDlKP~NIl~~~--~~~~Ki~DFGla~~~~~~~~~~~--~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSl  249 (398)
T 4b99_A          174 MHSAQVIHRDLKPSNLLVNE--NCELKIGDFGMARGLCTSPAEHQ--YFMTEYVATRWYRAPELMLSLHEYTQAIDLWSV  249 (398)
T ss_dssp             HHHTTCBCCCCCGGGEEECT--TCCEEECCCTTCBCC-------C--CCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHH
T ss_pred             HHHCcCcCCCcCccccccCC--CCCEEEeecceeeecccCccccc--cccccceeChHhcCHHHhcCCCCCCChhheehh
Confidence            99999999999999999986  89999999999988754321110  00111347888999998653 345677899999


Q ss_pred             HHHHHHHHH
Q 004254          529 RRTAQFFLN  537 (765)
Q Consensus       529 ~~~~~~~l~  537 (765)
                      .-.+.+++.
T Consensus       250 G~il~ell~  258 (398)
T 4b99_A          250 GCIFGEMLA  258 (398)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988777654

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.66  E-value=1.4e-16  Score=168.15  Aligned_cols=125  Identities=13%  Similarity=0.049  Sum_probs=85.2

Q ss_pred             eEEEEeecCCCChhhhhhhhhc--CCCHHHHHHH--HHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceec
Q 004254          410 QILTMEYVPGIKINRIQSLDEL--GVDRKRLGRY--AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGS  485 (765)
Q Consensus       410 ~vLVMEyieG~~L~d~~~l~~~--g~d~~~ia~~--li~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~  485 (765)
                      .++||||++|++|.++......  ..+...+...  .+-..+..+|..|++|+|+||+||+++.  ++.++|+|||++..
T Consensus       136 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~--~~~~kL~DfG~a~~  213 (332)
T 3qd2_B          136 LYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTM--DDVVKVGDFGLVTA  213 (332)
T ss_dssp             EEEEEECCCSSCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECT--TCCEEECCCTTCEE
T ss_pred             EEEEEEecCCCCHHHHHhcccCccchhhHHHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeC--CCCEEEeecCcccc
Confidence            6899999999999987543211  1122122222  2334578899999999999999999985  88999999999998


Q ss_pred             cChhhHHHHHH------HHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          486 ISPNIREGLLE------AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       486 L~~~~r~~l~~------l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ++......-..      .......+++.++++++...+..++..|++++...+.+++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~  270 (332)
T 3qd2_B          214 MDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELL  270 (332)
T ss_dssp             CSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHH
T ss_pred             cccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHH
Confidence            87653321110      0001123677888899888777778889999987766654

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.65  E-value=5.8e-16  Score=163.29  Aligned_cols=190  Identities=13%  Similarity=0.040  Sum_probs=126.5

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||.|++|+||+|+.  +|+.||||+..+.-.+.                                          .-
T Consensus        15 ~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~------------------------------------------~~   52 (310)
T 3s95_A           15 GEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEET------------------------------------------QR   52 (310)
T ss_dssp             EEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHH------------------------------------------HH
T ss_pred             cceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHH------------------------------------------HH
Confidence            36899999999999999  59999999874321110                                          11


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      .|.+|++.+.++    . +++|.-..-+.......++||||++|++|.++.......++...+...+  +...+..+|..
T Consensus        53 ~~~~E~~~l~~l----~-hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~  127 (310)
T 3s95_A           53 TFLKEVKVMRCL----E-HPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSM  127 (310)
T ss_dssp             HHHHHHHHHTTC----C-CTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC----C-CcCcccEEEEEecCCeeEEEEEecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            344555544443    2 3333222222233466799999999999999765433445555444433  33458889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHH--H------HHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE--A------FYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~--l------~~ai~~~D~~~i~~~l~~lG~~~~~~D~  525 (765)
                      |++|+|+||+||+++.  ++.++|+|||++..+..........  .      ......+++.+++++....+..++..|+
T Consensus       128 ~ivH~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di  205 (310)
T 3s95_A          128 NIIHRDLNSHNCLVRE--NKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDV  205 (310)
T ss_dssp             TEECSCCSTTSEEECT--TSCEEECCCTTCEECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHH
T ss_pred             CccCCCCCcCeEEECC--CCCEEEeecccceecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHH
Confidence            9999999999999985  8899999999999876543221100  0      0001246777889998887777788899


Q ss_pred             HHHHHHHHHHH
Q 004254          526 TAVRRTAQFFL  536 (765)
Q Consensus       526 ~~l~~~~~~~l  536 (765)
                      +++...+.+++
T Consensus       206 ~slG~~l~el~  216 (310)
T 3s95_A          206 FSFGIVLCEII  216 (310)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99988776665

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.65  E-value=4.1e-16  Score=164.50  Aligned_cols=186  Identities=18%  Similarity=0.170  Sum_probs=127.9

Q ss_pred             cccC-cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          294 ERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       294 ~~fd-~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      ..|. .+.||.|++|.||+|+.  +|+.||||+....-...                            .        + 
T Consensus        20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----------------------------~--------~-   62 (297)
T 3fxz_A           20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK----------------------------K--------E-   62 (297)
T ss_dssp             GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSC----------------------------H--------H-
T ss_pred             hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccH----------------------------H--------H-
Confidence            3443 36899999999999997  69999999874321111                            0        0 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHH
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLE  448 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~  448 (765)
                           .+.+|+..+..+    . +++|.-..-+.......++||||++|++|.++..  ....+...+...+.+  ..+.
T Consensus        63 -----~~~~E~~~l~~l----~-hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~~~~qi~~~l~  130 (297)
T 3fxz_A           63 -----LIINEILVMREN----K-NPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT--ETCMDEGQIAAVCRECLQALE  130 (297)
T ss_dssp             -----HHHHHHHHHHHC----C-CTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHH--HSCCCHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHhcC----C-CCCCCeEeEEEEECCEEEEEEECCCCCCHHHHHh--hcCCCHHHHHHHHHHHHHHHH
Confidence                 133444444332    2 2333222222234566799999999999998753  334555554444333  3578


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      .+|..|++|+|+||+||+++.  ++.++|+|||++..+++.....      ....+++.++++++...+..++..|++++
T Consensus       131 ~lH~~~i~H~Dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~Diwsl  202 (297)
T 3fxz_A          131 FLHSNQVIHRDIKSDNILLGM--DGSVKLTDFGFCAQITPEQSKR------STMVGTPYWMAPEVVTRKAYGPKVDIWSL  202 (297)
T ss_dssp             HHHHTTEECCCCSGGGEEECT--TCCEEECCCTTCEECCSTTCCB------CCCCSCGGGCCHHHHHCSCBCTHHHHHHH
T ss_pred             HHHhCCceeCCCCHHHEEECC--CCCEEEeeCCCceecCCccccc------CCccCCcCccChhhhcCCCCCcHHHHHHH
Confidence            899999999999999999985  8899999999998776543211      11246778888998887777888899999


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      ...+.+++
T Consensus       203 G~il~ell  210 (297)
T 3fxz_A          203 GIMAIEMI  210 (297)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88776654

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.64  E-value=7e-16  Score=159.12  Aligned_cols=183  Identities=13%  Similarity=0.066  Sum_probs=127.0

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|++|.||+|+. +++.||||+.+++....                                           -++
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-------------------------------------------~~~   52 (269)
T 4hcu_A           16 QEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE-------------------------------------------EDF   52 (269)
T ss_dssp             EEEEECSSCEEEEEEETTTEEEEEEEECTTSBCH-------------------------------------------HHH
T ss_pred             heecCCCccEEEEEEecCCCeEEEEEecccccCH-------------------------------------------HHH
Confidence            6899999999999999 78999999985532111                                           124


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~Gf  455 (765)
                      .+|++.+.++.     +++|.-..-+.......++||||++|++|.++........+...+...+.+  ..+..+|..|+
T Consensus        53 ~~E~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i  127 (269)
T 4hcu_A           53 IEEAEVMMKLS-----HPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACV  127 (269)
T ss_dssp             HHHHHHHHTCC-----CTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCC-----CCCEeeEEEEEecCCceEEEEEeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            45555555442     233322222223345679999999999999876544444555555444333  45888999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|+||+||+++.  ++.++|+|||++..+........     .....+..+++++....+..++..|++++...+.++
T Consensus       128 ~H~dikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l  200 (269)
T 4hcu_A          128 IHRDLAARNCLVGE--NQVIKVSDFGMTRFVLDDQYTSS-----TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEV  200 (269)
T ss_dssp             CCSCCCGGGEEECG--GGCEEECCTTGGGGBCCHHHHST-----TSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             ecCCcchheEEEcC--CCCEEeccccccccccccccccc-----cCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHH
Confidence            99999999999986  78999999999988765432211     112234567888888777777778999888766554


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       201 l  201 (269)
T 4hcu_A          201 F  201 (269)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.64  E-value=1.3e-15  Score=163.88  Aligned_cols=183  Identities=15%  Similarity=0.121  Sum_probs=123.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+........                                  +...      .
T Consensus        21 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~------~   60 (328)
T 3fe3_A           21 KTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNP----------------------------------TSLQ------K   60 (328)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCH----------------------------------HHHH------H
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCH----------------------------------HHHH------H
Confidence            7899999999999998  69999999884321110                                  0011      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|++.+..+.     +++|.-..-+.+.....++||||++|++|.+.... ...++...+...+  +-..+..+|..|
T Consensus        61 ~~~E~~~l~~l~-----hpnIv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~l~~~~~~~~~~qi~~al~~lH~~~  134 (328)
T 3fe3_A           61 LFREVRIMKILN-----HPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVA-HGRMKEKEARSKFRQIVSAVQYCHQKR  134 (328)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC-----CCCEeeEEEEEEECCEEEEEEECCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            334555444442     34332222223345667999999999999886532 2334444443333  234478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC-CCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV-PTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~-~~~D~~~l~~~~~  533 (765)
                      ++|+|+||+||+++.  ++.++|+|||++..++.....       ....+++.++++++....... +..|++++...+.
T Consensus       135 ivHrDlkp~NIll~~--~~~~kl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~  205 (328)
T 3fe3_A          135 IVHRDLKAENLLLDA--DMNIKIADFGFSNEFTVGGKL-------DAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILY  205 (328)
T ss_dssp             CCCSCCCGGGEEECT--TSCEEECSTTCCGGGSSSCGG-------GTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHH
T ss_pred             EeccCCCHHHEEEcC--CCCEEEeeccCceecCCCCcc-------ccccCCcceeCcccccCCCcCCchhhhhhhHHHHH
Confidence            999999999999985  889999999999877654321       123467788888888765443 5679999887766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       206 ell  208 (328)
T 3fe3_A          206 TLV  208 (328)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.64  E-value=2.8e-16  Score=168.07  Aligned_cols=189  Identities=15%  Similarity=0.230  Sum_probs=129.6

Q ss_pred             hcccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004254          293 FERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (765)
Q Consensus       293 F~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (765)
                      ++.|.. +.||.|++|.||+|+.  +|+.||+|+.+....+                                       
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~---------------------------------------   44 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTD---------------------------------------   44 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHH---------------------------------------
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCccc---------------------------------------
Confidence            344433 6899999999999999  5999999987432110                                       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHH
Q 004254          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYL  447 (765)
Q Consensus       370 ~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L  447 (765)
                          +-.+.+|+..+..+    . +++|.-..-+.+.....++||||++|++|.+........++...+...+.+  ..+
T Consensus        45 ----~~~~~~E~~~l~~l----~-hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al  115 (321)
T 1tki_A           45 ----QVLVKKEISILNIA----R-HRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEAL  115 (321)
T ss_dssp             ----HHHHHHHHHHHHHS----C-CTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhC----C-CCCCCeEeEEEecCCEEEEEEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence                11234455555443    2 333322222234456779999999999998875433334555555444333  347


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004254          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~  527 (765)
                      ..+|..|++|+|+||+||+++...++.++|+|||++..+.+....       ....+++.++++++...+..++..|+++
T Consensus       116 ~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~Diws  188 (321)
T 1tki_A          116 QFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNF-------RLLFTAPEYYAPEVHQHDVVSTATDMWS  188 (321)
T ss_dssp             HHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEE-------EEEESCGGGSCHHHHTTCEECHHHHHHH
T ss_pred             HHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCcc-------ccccCChhhcCcHHhcCCCCCchhhHHH
Confidence            889999999999999999998534689999999999987654211       1134677888888887666667789999


Q ss_pred             HHHHHHHHH
Q 004254          528 VRRTAQFFL  536 (765)
Q Consensus       528 l~~~~~~~l  536 (765)
                      +...+.+++
T Consensus       189 lG~il~~ll  197 (321)
T 1tki_A          189 LGTLVYVLL  197 (321)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            987766654

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.64  E-value=8.3e-16  Score=170.06  Aligned_cols=174  Identities=17%  Similarity=0.254  Sum_probs=118.3

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhh--HHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDL--FDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~--i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+||+|++|.||+|.. +|++||||+.|++....  +..+           ..+.  ......+|..+         ..+
T Consensus       101 ~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~-----------r~~~--~~~~~~~~~~~---------~rl  158 (397)
T 4gyi_A          101 SRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKAN-----------RDYL--RNRSTGSWMYL---------SRL  158 (397)
T ss_dssp             EEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC-------------CEEC--TTSCHHHHHHH---------HHH
T ss_pred             CEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHH-----------HHHH--HhhccccHHHH---------HHH
Confidence            5899999999999999 89999999998875421  0000           0000  00001112111         122


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCc
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGF  455 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~Gf  455 (765)
                      .-..|.+|+.++..     .++.+|.+|.  ..+.+||||||+|.++.++...    .+...+...++. .+..+|..|+
T Consensus       159 ~A~kE~~nL~rL~~-----~gv~vp~p~~--~~~~~LVME~i~G~~L~~l~~~----~~~~~l~~qll~-~l~~lH~~gI  226 (397)
T 4gyi_A          159 AAIKEFAFMKALYE-----EGFPVPEPIA--QSRHTIVMSLVDALPMRQVSSV----PDPASLYADLIA-LILRLAKHGL  226 (397)
T ss_dssp             HHHHHHHHHHHHHH-----TTCSCCCEEE--EETTEEEEECCSCEEGGGCCCC----SCHHHHHHHHHH-HHHHHHHTTE
T ss_pred             HHHHHHHHHHHHHh-----cCCCCCeeee--ccCceEEEEecCCccHhhhccc----HHHHHHHHHHHH-HHHHHHHCCC
Confidence            33568899999865     3577888884  3567999999999998775322    245556555443 4677899999


Q ss_pred             cccCCCCCcEEEeecCCC----------cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGG----------RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g----------~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~  515 (765)
                      +|||+||.|||+++  +|          .+++|||+.+...+...-..|       +.+|...+...+.+
T Consensus       227 VHrDLKp~NILl~~--dgd~~d~~~~~~~~~iID~~Q~V~~~hp~a~~~-------l~RDv~ni~~fF~k  287 (397)
T 4gyi_A          227 IHGDFNEFNILIRE--EKDAEDPSSITLTPIIIXFPQMVSMDHPNAEMY-------FDRDVQCIKRFFER  287 (397)
T ss_dssp             ECSCCSTTSEEEEE--EECSSCTTSEEEEEEECCCTTCEETTSTTHHHH-------HHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHEEEeC--CCCcccccccccceEEEEeCCcccCCCCChHHH-------HHHHHHHHHHHHHh
Confidence            99999999999986  33          489999999887765543332       35677777777754

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.64  E-value=5.5e-15  Score=156.17  Aligned_cols=171  Identities=15%  Similarity=0.193  Sum_probs=114.7

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|++|+||+|+. +|+.||||+.+++....-               ............|.         ......+
T Consensus        96 ~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~---------------~~~~~~~~~~~~w~---------~~~~~~~  151 (282)
T 1zar_A           96 KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFK---------------KVKEKRDYGDLHFS---------VLAIRSA  151 (282)
T ss_dssp             EEEEECSSEEEEEEEETTTEEEEEEEECC---------------------CCCC-------CHH---------HHHHHHH
T ss_pred             CEeccCCCceEEEEEeCCCCEEEEEEEECCCCchh---------------hhhhhhhhcchhhH---------HHHHHHH
Confidence            6899999999999999 799999999976532110               00000000000111         1123456


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFH  457 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~GffH  457 (765)
                      .+|+..+.++.      . +.+|.++..  +..++||||++|++|.++. .    .+...++..++ ..+..+|..|++|
T Consensus       152 ~~E~~~l~~l~------~-~~v~~~~~~--~~~~lvmE~~~g~~L~~l~-~----~~~~~i~~qi~-~~l~~lH~~giiH  216 (282)
T 1zar_A          152 RNEFRALQKLQ------G-LAVPKVYAW--EGNAVLMELIDAKELYRVR-V----ENPDEVLDMIL-EEVAKFYHRGIVH  216 (282)
T ss_dssp             HHHHHHHHHTT------T-SSSCCEEEE--ETTEEEEECCCCEEGGGCC-C----SCHHHHHHHHH-HHHHHHHHTTEEC
T ss_pred             HHHHHHHHhcc------C-CCcCeEEec--cceEEEEEecCCCcHHHcc-h----hhHHHHHHHHH-HHHHHHHHCCCEe
Confidence            77887777765      2 567776643  5679999999999998831 1    23444544444 4477889999999


Q ss_pred             cCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH-HHcCC
Q 004254          458 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM-VQMGV  518 (765)
Q Consensus       458 aDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l-~~lG~  518 (765)
                      +|+||+||+++   ++.++|+|||++...+......+       ..+|...+...+ ...|.
T Consensus       217 rDlkp~NILl~---~~~vkl~DFG~a~~~~~~~a~e~-------l~rdv~~i~~~f~~~~~~  268 (282)
T 1zar_A          217 GDLSQYNVLVS---EEGIWIIDFPQSVEVGEEGWREI-------LERDVRNIITYFSRTYRT  268 (282)
T ss_dssp             SCCSTTSEEEE---TTEEEECCCTTCEETTSTTHHHH-------HHHHHHHHHHHHHHHHCC
T ss_pred             CCCCHHHEEEE---CCcEEEEECCCCeECCCCCHHHH-------HHHHHHHHHHHHHHhcCC
Confidence            99999999998   78999999999998876544333       346777777777 45564

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.64  E-value=1.6e-15  Score=165.06  Aligned_cols=190  Identities=21%  Similarity=0.189  Sum_probs=123.7

Q ss_pred             ccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          295 RFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       295 ~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      .|+. +.||.|++|.||+|+.  +|+.||||+.+......                                 ++...  
T Consensus        24 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~---------------------------------~~~~~--   68 (353)
T 3txo_A           24 NFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQ---------------------------------DDDVE--   68 (353)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHH---------------------------------HTTHH--
T ss_pred             heEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcc---------------------------------hhHHH--
Confidence            3443 7899999999999998  59999999984321000                                 00001  


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQ  449 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~q  449 (765)
                          .+..|.+.+..+    .++++|.-..-+.......+|||||++|++|.+.... ...++...+...+  +-..+..
T Consensus        69 ----~~~~E~~il~~~----~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~  139 (353)
T 3txo_A           69 ----CTMTEKRILSLA----RNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQK-SRRFDEARARFYAAEIISALMF  139 (353)
T ss_dssp             ----HHHHHHHHHHHT----TTCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhc----cCCCceeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHH
Confidence                122333333332    2344443333333445567999999999999886532 2334544443333  3345788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..|++|+|+||+||+++.  +|.++|+|||++.........      .....+++.++++++..-...++..|++++.
T Consensus       140 LH~~givHrDlkp~NILl~~--~g~ikL~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG  211 (353)
T 3txo_A          140 LHDKGIIYRDLKLDNVLLDH--EGHCKLADFGMCKEGICNGVT------TATFCGTPDYIAPEILQEMLYGPAVDWWAMG  211 (353)
T ss_dssp             HHHTTCBCCCCCGGGEEECT--TSCEEECCCTTCBCSCC---------------CCGGGCCHHHHHHHHCTTHHHHHHHH
T ss_pred             HHHCCCcccCCCHHHEEECC--CCCEEEccccceeecccCCcc------ccccCCCcCeEChhhcCCCCcCCccCCCcch
Confidence            99999999999999999986  899999999999865432211      1123467888888888766667788999998


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       212 ~il~ell  218 (353)
T 3txo_A          212 VLLYEML  218 (353)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776654

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.63  E-value=1.4e-15  Score=161.72  Aligned_cols=192  Identities=16%  Similarity=0.130  Sum_probs=122.1

Q ss_pred             hhcccC-cccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          292 VFERFD-VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       292 iF~~fd-~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      .+..|. .+.||+|++|.||+|+.+|+.||||+........                                  +.   
T Consensus        35 ~~~~y~i~~~lG~G~~g~V~~~~~~~~~vavK~~~~~~~~~----------------------------------~~---   77 (309)
T 3p86_A           35 PWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHA----------------------------------ER---   77 (309)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTEEEEEEEECCCCCSH----------------------------------HH---
T ss_pred             ChhHceeeeEeecCCCeEEEEEEECCCcEEEEEecCCCCCH----------------------------------HH---
Confidence            344454 3789999999999999999999999985432111                                  00   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh--cCCCHHHHHHHH--HHHH
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE--LGVDRKRLGRYA--VESY  446 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~--~g~d~~~ia~~l--i~~~  446 (765)
                         .-.|.+|++.+.++.     +++|.-..-+.......++||||++|++|.++.....  ..++...+...+  +...
T Consensus        78 ---~~~~~~E~~~l~~l~-----hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~a  149 (309)
T 3p86_A           78 ---VNEFLREVAIMKRLR-----HPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKG  149 (309)
T ss_dssp             ---HHHHHHHHHHHHHCC-----CTTBCCEEEEECSTTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHhCC-----CCCEeeEEEEEEECCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Confidence               013455666555542     2333222222333456799999999999998754221  114444443333  3345


Q ss_pred             HHHHHhCC--ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004254          447 LEQILSHG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (765)
Q Consensus       447 L~qi~~~G--ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D  524 (765)
                      +..+|..|  ++|+|+||+||+++.  ++.++|+|||++..........      ....+++.+++++....+..++..|
T Consensus       150 L~~LH~~~~~ivH~Dikp~NIll~~--~~~~kL~Dfg~a~~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~D  221 (309)
T 3p86_A          150 MNYLHNRNPPIVHRNLKSPNLLVDK--KYTVKVCDFGLSRLKASTFLSS------KSAAGTPEWMAPEVLRDEPSNEKSD  221 (309)
T ss_dssp             HHHHHTSSSCCCCTTCCGGGEEECT--TCCEEECCCC-----------------------CCTTSCHHHHTTCCCCTTHH
T ss_pred             HHHHHcCCCCEECCCCChhhEEEeC--CCcEEECCCCCCcccccccccc------ccCCCCccccChhhhcCCCCCchhh
Confidence            78899999  999999999999985  8899999999987654432111      1123567788888888777778889


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++...+.+++
T Consensus       222 iwslG~il~ell  233 (309)
T 3p86_A          222 VYSFGVILWELA  233 (309)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988776654

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.63  E-value=1.3e-15  Score=160.26  Aligned_cols=186  Identities=14%  Similarity=0.109  Sum_probs=122.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+........                                 .+..+      .
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~~~~------~   57 (294)
T 4eqm_A           17 DKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREK---------------------------------EETLK------R   57 (294)
T ss_dssp             EEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCC---------------------------------HHHHH------H
T ss_pred             EEEccCCCEEEEEEEECCCCCeEEEEEeccCcccc---------------------------------HHHHH------H
Confidence            6899999999999998  69999999874322111                                 00111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      |.+|++.+.++    . +++|.-..-+.+.....++||||++|++|.++.... ..++...+...+.  -..+..+|..|
T Consensus        58 ~~~e~~~l~~l----~-hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~  131 (294)
T 4eqm_A           58 FEREVHNSSQL----S-HQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESH-GPLSVDTAINFTNQILDGIKHAHDMR  131 (294)
T ss_dssp             HHHHHHHHTTC----C-BTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcC----C-CCCCceEEEeeeeCCeEEEEEeCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34455544433    2 233322222233445679999999999999875422 2345554444333  33478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||+||+++.  +++++|+|||++..++.......     ....+++.+++++...-+..++..|++++...+.+
T Consensus       132 i~H~Dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~  204 (294)
T 4eqm_A          132 IVHRDIKPQNILIDS--NKTLKIFDFGIAKALSETSLTQT-----NHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYE  204 (294)
T ss_dssp             CCCCCCCGGGEEECT--TSCEEECCCSSSTTC------------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHH
T ss_pred             cccCCCCHHHEEECC--CCCEEEEeCCCcccccccccccc-----CccccCccccCHhHhcCCCCCchHhHHHHHHHHHH
Confidence            999999999999985  88999999999988765432211     11235677888888887777778899999887766


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       205 ll  206 (294)
T 4eqm_A          205 ML  206 (294)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.63  E-value=1.2e-15  Score=158.19  Aligned_cols=181  Identities=14%  Similarity=0.122  Sum_probs=123.4

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||.|++|.||+|.. ++..||||+.+++....                                           -++
T Consensus        30 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-------------------------------------------~~~   66 (283)
T 3gen_A           30 KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE-------------------------------------------DEF   66 (283)
T ss_dssp             EECC---CEEEEEEEETTTEEEEEEEECTTSBCH-------------------------------------------HHH
T ss_pred             hhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCH-------------------------------------------HHH
Confidence            7899999999999999 67899999985432110                                           123


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~  453 (765)
                      .+|++.+.++.     +++  +++++.  ......++||||++|++|.++.......++...+...+.+  ..+..+|..
T Consensus        67 ~~E~~~l~~l~-----h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~  139 (283)
T 3gen_A           67 IEEAKVMMNLS-----HEK--LVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK  139 (283)
T ss_dssp             HHHHHHHHTCC-----CTT--BCCEEEEECSSSSEEEEECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCC-----CCC--EeeEEEEEecCCCeEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            44555444432     233  333333  3345679999999999999876543445666655544433  348889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||+||+++.  ++.++|+|||++..+........     .....+..+++++....+..++..|++++...+.
T Consensus       140 ~i~H~dikp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~  212 (283)
T 3gen_A          140 QFLHRDLAARNCLVND--QGVVKVSDFGLSRYVLDDEYTSS-----VGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMW  212 (283)
T ss_dssp             TCCCSSCSGGGEEECT--TSCEEECSTTGGGGBCCHHHHST-----TSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHH
T ss_pred             CccCCCCccceEEEcC--CCCEEEccccccccccccccccc-----cCCccCcccCCHHHhccCCCCchhhHHHHHHHHH
Confidence            9999999999999985  88999999999988765432211     1112345677888887776777789998887766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       213 ~l~  215 (283)
T 3gen_A          213 EIY  215 (283)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.62  E-value=1.1e-15  Score=161.72  Aligned_cols=193  Identities=21%  Similarity=0.239  Sum_probs=120.2

Q ss_pred             hhcccC-cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004254          292 VFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (765)
Q Consensus       292 iF~~fd-~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (765)
                      +.+.|. .+.||.|++|+||+|+.  +|+.||||+.++.....-                                 +..
T Consensus        10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~---------------------------------~~~   56 (311)
T 3ork_A           10 LSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDP---------------------------------SFY   56 (311)
T ss_dssp             ETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSH---------------------------------HHH
T ss_pred             ecCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCH---------------------------------HHH
Confidence            334444 37899999999999998  699999999865432210                                 001


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccC--CC----eEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH
Q 004254          369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT--TP----QILTMEYVPGIKINRIQSLDELGVDRKRLGRYA  442 (765)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s--t~----~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l  442 (765)
                            ..+.+|++.+.++    . ++  .+++++..+.  ..    .++||||++|++|.++.... ..++...+...+
T Consensus        57 ------~~~~~E~~~l~~l----~-hp--~iv~~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~  122 (311)
T 3ork_A           57 ------LRFRREAQNAAAL----N-HP--AIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-GPMTPKRAIEVI  122 (311)
T ss_dssp             ------HHHHHHHTTCCCC----C-CT--TBCCEEEEEEEEETTEEEEEEEEECCCEEEHHHHHHHH-CSCCHHHHHHHH
T ss_pred             ------HHHHHHHHHHHcC----C-CC--CcceEEEeeeccCCCCcccEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHH
Confidence                  1233444333222    1 22  2334443221  22    29999999999999876432 234555444433


Q ss_pred             H--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004254          443 V--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (765)
Q Consensus       443 i--~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~  520 (765)
                      .  -..+..+|..|++|+|+||+||+++.  ++.++|+|||++..+.........   .....++..+++++....+..+
T Consensus       123 ~qi~~~l~~lH~~~ivH~dlkp~Nil~~~--~~~~kl~Dfg~a~~~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~  197 (311)
T 3ork_A          123 ADACQALNFSHQNGIIHRDVKPANIMISA--TNAVKVMDFGIARAIADSGNSVTQ---TAAVIGTAQYLSPEQARGDSVD  197 (311)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCGGGEEEET--TSCEEECCCSCC---------------------CCTTCCHHHHHTCCCC
T ss_pred             HHHHHHHHHHHHCCCCcCCCCHHHEEEcC--CCCEEEeeccCccccccccccccc---ccccCcCcccCCHHHhcCCCCC
Confidence            3  23478899999999999999999986  889999999999877654321110   1112357778888888777677


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004254          521 PTGDTTAVRRTAQFFL  536 (765)
Q Consensus       521 ~~~D~~~l~~~~~~~l  536 (765)
                      +..|++++...+.+++
T Consensus       198 ~~~Di~slG~~l~~ll  213 (311)
T 3ork_A          198 ARSDVYSLGCVLYEVL  213 (311)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHHHHHHHHH
Confidence            7789999887766654

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.62  E-value=2.6e-15  Score=160.72  Aligned_cols=183  Identities=13%  Similarity=0.114  Sum_probs=111.1

Q ss_pred             CcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          297 DVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       297 d~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      ..++||.|++|.||+|+.  +|+.||||+.......                                            
T Consensus        15 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--------------------------------------------   50 (325)
T 3kn6_A           15 KDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEA--------------------------------------------   50 (325)
T ss_dssp             TSCCSEEETTEEEEEEEETTTCCEEEEEEEEGGGHH--------------------------------------------
T ss_pred             CCCccccCCCeEEEEEEECCCCCEEEEEEEChhhhh--------------------------------------------
Confidence            347899999999999999  5999999987432211                                            


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS  452 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~  452 (765)
                       ++.+|...+..+.    ++++|.-..-+.+.....+|||||++|++|.+.... ...++...+...+.  -..+..+|.
T Consensus        51 -~~~~e~~~l~~l~----~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~~l~~LH~  124 (325)
T 3kn6_A           51 -NTQKEITALKLCE----GHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKK-KKHFSETEASYIMRKLVSAVSHMHD  124 (325)
T ss_dssp             -HHHHHHHHHHHTT----TCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-CSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHhc----CCCCeeEEEEEEEcCCEEEEEEEccCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence             1223333333332    234433222233445567999999999999886542 23355554444333  334788999


Q ss_pred             CCccccCCCCCcEEEeecCCC---cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGG---RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g---~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      .|++|+|+||+||+++.  ++   .++|+|||++..........      ....++..++++++..-...++..|++++.
T Consensus       125 ~~ivH~Dlkp~NIll~~--~~~~~~~kl~Dfg~a~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~DiwslG  196 (325)
T 3kn6_A          125 VGVVHRDLKPENLLFTD--ENDNLEIKIIDFGFARLKPPDNQPL------KTPCFTLHYAAPELLNQNGYDESCDLWSLG  196 (325)
T ss_dssp             TTEECCCCCGGGEEEEC------CEEEECCCTTCEECCC----------------------------CCCCHHHHHHHHH
T ss_pred             CCCeecCCCHHHEEEec--CCCcccEEEeccccceecCCCCCcc------cccCCCcCccCHHHhcCCCCCCccchHHHH
Confidence            99999999999999985  33   79999999998776543211      112346778888888766667777999998


Q ss_pred             HHHHHHHH
Q 004254          530 RTAQFFLN  537 (765)
Q Consensus       530 ~~~~~~l~  537 (765)
                      ..+.+++.
T Consensus       197 ~il~~ll~  204 (325)
T 3kn6_A          197 VILYTMLS  204 (325)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77766653

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.61  E-value=7.2e-16  Score=170.05  Aligned_cols=193  Identities=17%  Similarity=0.225  Sum_probs=131.0

Q ss_pred             hhhhcccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHH
Q 004254          290 DDVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE  366 (765)
Q Consensus       290 eeiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E  366 (765)
                      .++++.|+. +.||+|++|.||+|+.  +|+.||+|+........                                   
T Consensus        47 ~~~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~-----------------------------------   91 (387)
T 1kob_A           47 GSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLD-----------------------------------   91 (387)
T ss_dssp             SCGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHH-----------------------------------
T ss_pred             CccccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhh-----------------------------------
Confidence            345555553 7899999999999999  59999999884432100                                   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--
Q 004254          367 CASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--  444 (765)
Q Consensus       367 ~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--  444 (765)
                             +..+.+|+..+..+    . +++|.-..-+.+.....+|||||++|++|.+........++...+...+.+  
T Consensus        92 -------~~~~~~E~~il~~l----~-hpnIv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~  159 (387)
T 1kob_A           92 -------KYTVKNEISIMNQL----H-HPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQAC  159 (387)
T ss_dssp             -------HHHHHHHHHHHTTC----C-STTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHhC----C-CcCCCeEEEEEEeCCEEEEEEEcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence                   11234455444333    2 233322222223456679999999999998865433334555555444333  


Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004254          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (765)
Q Consensus       445 ~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D  524 (765)
                      ..+..+|..|++|+|+||+||+++...++.++|+|||++..++.....       ....+++.++++++...+..+...|
T Consensus       160 ~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~D  232 (387)
T 1kob_A          160 EGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIV-------KVTTATAEFAAPEIVDREPVGFYTD  232 (387)
T ss_dssp             HHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCE-------EEECSSGGGCCHHHHTTCCBCHHHH
T ss_pred             HHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCCCcce-------eeeccCCCccCchhccCCCCCCccc
Confidence            347889999999999999999997534578999999999988654211       1124677888899887766677789


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++...+.+++
T Consensus       233 iwSlG~il~ell  244 (387)
T 1kob_A          233 MWAIGVLGYVLL  244 (387)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             EeeHhHHHHHHH
Confidence            999887766554

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.61  E-value=1e-15  Score=167.49  Aligned_cols=188  Identities=15%  Similarity=0.140  Sum_probs=115.9

Q ss_pred             cccccccceeEEEEEEeC-----CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l~-----G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      .+.||+|++|.||+|++.     |..||||+.+.+..+.                                         
T Consensus        50 ~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------------   88 (373)
T 2qol_A           50 DKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK-----------------------------------------   88 (373)
T ss_dssp             CEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHH-----------------------------------------
T ss_pred             eeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHH-----------------------------------------
Confidence            378999999999999872     6789999986543211                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQI  450 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi  450 (765)
                      ..-+|.+|+..+.++     ++++|.-..-+.......+|||||++|++|.++.......++...+...+.  ...+..+
T Consensus        89 ~~~~~~~E~~~l~~l-----~h~niv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~L  163 (373)
T 2qol_A           89 QRRDFLGEASIMGQF-----DHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYL  163 (373)
T ss_dssp             HHHHHHHHHHHHTTC-----CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-----CCCCCCeEEEEEeeCCceEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            011345566555443     233332222222334567999999999999997654333456555544433  3458889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      |..|++|+|+||.||+++.  ++.++|+|||++..+..........   ........+++++....+..++..|++++..
T Consensus       164 H~~~ivH~Dlkp~NIll~~--~~~~kl~Dfg~a~~~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~  238 (373)
T 2qol_A          164 SDMGYVHRDLAARNILINS--NLVCKVSDFGLGRVLEDDPEAAYTT---RGGKIPIRWTSPEAIAYRKFTSASDVWSYGI  238 (373)
T ss_dssp             HHTTCCCSCCCGGGEEECT--TCCEEECCC-------------------------CTTSCHHHHHHCCCCHHHHHHHHHH
T ss_pred             HHCCeeCCCCCcceEEEcC--CCCEEECcCccccccccCCccceec---cCCCcCCCccChhhhccCCcCchhcHHHHHH
Confidence            9999999999999999985  8899999999998876543221110   0011233467788777777777789999887


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       239 il~ell  244 (373)
T 2qol_A          239 VLWEVM  244 (373)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766544

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.61  E-value=4.8e-16  Score=166.24  Aligned_cols=187  Identities=14%  Similarity=0.103  Sum_probs=123.1

Q ss_pred             ccccccceeEEEEEEe--C---CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--K---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~---G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||+|++|.||+|++  +   +..||||+.+.+..+..                                         
T Consensus        55 ~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~-----------------------------------------   93 (325)
T 3kul_A           55 KIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQ-----------------------------------------   93 (325)
T ss_dssp             EEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHH-----------------------------------------
T ss_pred             eEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHH-----------------------------------------
Confidence            6899999999999998  3   45699999865432210                                         


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~  451 (765)
                      .-+|.+|+..+.++    . +++|.-..-+.......+|||||++|++|.++.......++...+...+..  ..+..+|
T Consensus        94 ~~~~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH  168 (325)
T 3kul_A           94 RRDFLSEASIMGQF----D-HPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLS  168 (325)
T ss_dssp             HHHHHHHHHHHTTC----C-CTTBCCEEEEECGGGCCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC----C-CCCCCcEEEEEEeCCccEEEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence            11344555544443    2 333322222233345679999999999999976444344565555444433  3478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..|++|+|+||+||+++.  ++.++|+|||++..+.........   .........+++++....+..++..|++++...
T Consensus       169 ~~~ivH~Dlkp~NIll~~--~~~~kl~Dfg~a~~~~~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~i  243 (325)
T 3kul_A          169 DLGYVHRDLAARNVLVDS--NLVCKVSDFGLSRVLEDDPDAAYT---TTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVV  243 (325)
T ss_dssp             HTTEECSCCSGGGEEECT--TCCEEECCCSSCEECC----CCEE---CC---CCGGGSCHHHHHHCEECHHHHHHHHHHH
T ss_pred             HCCeeCCCCCcceEEECC--CCCEEECCCCcccccccCccceee---ccCCCCcccccCHhHhcCCCCCcHHHHHHHHHH
Confidence            999999999999999985  889999999999987653221100   000112345777888776666777899998877


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       244 l~ell  248 (325)
T 3kul_A          244 MWEVL  248 (325)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.61  E-value=1.6e-15  Score=156.90  Aligned_cols=191  Identities=15%  Similarity=0.107  Sum_probs=111.1

Q ss_pred             cccC-cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          294 ERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       294 ~~fd-~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      ..|. .+.||+|++|.||+|+.  +|+.||||+..+.....                                 .+..  
T Consensus        11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~---------------------------------~~~~--   55 (278)
T 3cok_A           11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYK---------------------------------AGMV--   55 (278)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH---------------------------------TTCH--
T ss_pred             ccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhh---------------------------------hhHH--
Confidence            3443 37899999999999998  69999999874321000                                 0000  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHH
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLE  448 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~  448 (765)
                          -.+.+|++.+.++    . ++++.-..-+.......+++|||++|++|.++.......++...+...+.+  ..+.
T Consensus        56 ----~~~~~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~  126 (278)
T 3cok_A           56 ----QRVQNEVKIHCQL----K-HPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGML  126 (278)
T ss_dssp             ----HHHHHHHHHHTTB----C-CTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHhC----C-CCCeEeEEEEEccCCeEEEEEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Confidence                1233444433322    2 233322222333455679999999999998875433334555554444333  3478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      .+|..|++|+|+||+||+++.  ++.++|+|||++..+........      ...++..++++++..-+..++..|++++
T Consensus       127 ~lH~~~i~H~dl~p~Nili~~--~~~~kl~dfg~~~~~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~Di~sl  198 (278)
T 3cok_A          127 YLHSHGILHRDLTLSNLLLTR--NMNIKIADFGLATQLKMPHEKHY------TLCGTPNYISPEIATRSAHGLESDVWSL  198 (278)
T ss_dssp             HHHHTTEECSSCCGGGEEECT--TCCEEECCCTTCEECC----------------------------------CTHHHHH
T ss_pred             HHHHCCeecCCCCHHHEEEcC--CCCEEEEeecceeeccCCCCcce------eccCCCCcCCcchhcCCCCCchhhHHHH
Confidence            899999999999999999985  88999999999998764432211      1235677888888777667778899999


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      ...+.+++
T Consensus       199 G~il~~l~  206 (278)
T 3cok_A          199 GCMFYTLL  206 (278)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87766554

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.61  E-value=3.4e-16  Score=169.46  Aligned_cols=188  Identities=15%  Similarity=0.081  Sum_probs=123.7

Q ss_pred             ccccccceeEEEEEE-----e--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRAR-----L--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~-----l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||.|++|.||+|+     .  +|+.||||+.++.....                                        
T Consensus        71 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------------  110 (365)
T 3e7e_A           71 HLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWE----------------------------------------  110 (365)
T ss_dssp             EEEEECSSEEEEEEEC-------CCCCEEEEEESSCCHHH----------------------------------------
T ss_pred             EEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCChhH----------------------------------------
Confidence            579999999999994     2  58999999986653222                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh----hhcCCCHHHHHHHHHH--H
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL----DELGVDRKRLGRYAVE--S  445 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l----~~~g~d~~~ia~~li~--~  445 (765)
                           +..|.+.+.++....  ++.+....-+.......+|||||++|++|.++...    ....++...+...+.+  .
T Consensus       111 -----~~~e~~~~~~l~~~~--~~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~  183 (365)
T 3e7e_A          111 -----FYIGTQLMERLKPSM--QHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLY  183 (365)
T ss_dssp             -----HHHHHHHHHHSCGGG--GGGBCCEEEEEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhhhhh--hhhhhhhheeeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHH
Confidence                 223333333332111  12222222222345677999999999999997643    1233555544444333  3


Q ss_pred             HHHHHHhCCccccCCCCCcEEEee---------cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004254          446 YLEQILSHGFFHADPHPGNIAVDD---------VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  516 (765)
Q Consensus       446 ~L~qi~~~GffHaDpHPGNILV~~---------~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l  516 (765)
                      .+..+|..|++|+|+||+|||++.         ..++.++|+|||++..+........    .....++..++++++..-
T Consensus       184 ~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~  259 (365)
T 3e7e_A          184 MIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTI----FTAKCETSGFQCVEMLSN  259 (365)
T ss_dssp             HHHHHHTTTEECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEE----ECCSSCTTSCCCHHHHTT
T ss_pred             HHHHHhhCCeecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCce----eeeecCCCCCCChHHhcC
Confidence            488899999999999999999974         1157899999999975531110000    011236778889998877


Q ss_pred             CCCCCCCCHHHHHHHHHHHHH
Q 004254          517 GVLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       517 G~~~~~~D~~~l~~~~~~~l~  537 (765)
                      +..++..|++++...+.+++.
T Consensus       260 ~~~~~~~DiwslG~il~ellt  280 (365)
T 3e7e_A          260 KPWNYQIDYFGVAATVYCMLF  280 (365)
T ss_dssp             CCBSTHHHHHHHHHHHHHHHH
T ss_pred             CCCCccccHHHHHHHHHHHHh
Confidence            777788899999987776653

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.61  E-value=2.5e-15  Score=168.30  Aligned_cols=179  Identities=14%  Similarity=0.151  Sum_probs=125.0

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +.||+|++|.||+|.++|+.||||+.+++...                                            -+|.
T Consensus       199 ~~lG~G~fg~V~~~~~~~~~vavK~~~~~~~~--------------------------------------------~~~~  234 (450)
T 1k9a_A          199 QTIGKGEFGDVMLGDYRGNKVAVKCIKNDATA--------------------------------------------QAFL  234 (450)
T ss_dssp             EEEEECSSEEEEEEEETTEEEEEEEESSCTTS--------------------------------------------HHHH
T ss_pred             eeecCcCCeeEEEEEecCCeEEEEEeCCchHH--------------------------------------------HHHH
Confidence            68999999999999999999999998543210                                            1345


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcC-CCHHHHHHHHH--HHHHHHHHhCCc
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG-VDRKRLGRYAV--ESYLEQILSHGF  455 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g-~d~~~ia~~li--~~~L~qi~~~Gf  455 (765)
                      +|++.+.++    .+..-+.+-.++.+.....++||||++|++|.++....... ++...+...+.  ...+..+|..|+
T Consensus       235 ~E~~~l~~l----~h~niv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i  310 (450)
T 1k9a_A          235 AEASVMTQL----RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNF  310 (450)
T ss_dssp             HHHHHHHTC----CCTTBCCEEEEEECTTSCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHHhc----cCCCEEEEEEEEEcCCCceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            566655544    22222333333333334679999999999999876433222 35444443333  345788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|+||.||+++.  ++.++|+|||++.........         ......+++++....+..++..|++++...+.++
T Consensus       311 vHrDlkp~Nill~~--~~~~kl~DfG~a~~~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el  379 (450)
T 1k9a_A          311 VHRDLAARNVLVSE--DNVAKVSDFGLTKEASSTQDT---------GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEI  379 (450)
T ss_dssp             ECSCCCGGGEEECT--TSCEEECCCTTCEECC---------------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHH
T ss_pred             eCCCCCHhhEEECC--CCCEEEeeCCCcccccccccC---------CCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHH
Confidence            99999999999985  889999999999876543211         1345668888888877777788999998776655


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       380 ~  380 (450)
T 1k9a_A          380 Y  380 (450)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.61  E-value=1.8e-15  Score=158.15  Aligned_cols=185  Identities=17%  Similarity=0.147  Sum_probs=120.1

Q ss_pred             ccccccceeEEEEEEe------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +.||.|++|.||+|++      +|+.||||+.++...+.                                    .    
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~------------------------------------~----   55 (295)
T 3ugc_A           16 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEH------------------------------------L----   55 (295)
T ss_dssp             EEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHH------------------------------------H----
T ss_pred             heeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHH------------------------------------H----
Confidence            6899999999999984      58999999885432111                                    0    


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeecc----CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESY  446 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~----st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~  446 (765)
                        -++.+|++.+.++.     +++  +++++.-+    ....++||||++|++|.++.......++...+...+.  ...
T Consensus        56 --~~~~~E~~~l~~l~-----h~~--iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~  126 (295)
T 3ugc_A           56 --RDFEREIEILKSLQ-----HDN--IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKG  126 (295)
T ss_dssp             --HHHHHHHHHHHTCC-----CTT--BCCEEEEECHHHHTSCEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHhCC-----CCC--EeeEEEEEecCCCCceEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence              12345555454442     232  23333211    2346899999999999997654443456555544433  344


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004254          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (765)
Q Consensus       447 L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~  526 (765)
                      +..+|..|++|+|+||+||+++.  +++++|+|||++..++.......   ......+...+++++...-+..++..|++
T Consensus       127 l~~lH~~~ivH~Dikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~  201 (295)
T 3ugc_A          127 MEYLGTKRYIHRDLATRNILVEN--ENRVKIGDFGLTKVLPQDKEFFK---VKEPGESPIFWYAPESLTESKFSVASDVW  201 (295)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEEEE--TTEEEECCCCSCC----------------CTTCGGGGCCHHHHHHCCCCHHHHHH
T ss_pred             HHHHhcCCcccCCCCHhhEEEcC--CCeEEEccCcccccccCCcceee---eccCCCCccceeCcHHhcCCCCChHHHHH
Confidence            78899999999999999999997  89999999999988765432111   01111233446777777766677778999


Q ss_pred             HHHHHHHHHHH
Q 004254          527 AVRRTAQFFLN  537 (765)
Q Consensus       527 ~l~~~~~~~l~  537 (765)
                      ++...+.+++.
T Consensus       202 slG~~l~~l~~  212 (295)
T 3ugc_A          202 SFGVVLYELFT  212 (295)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99887776654

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.61  E-value=6.5e-16  Score=163.95  Aligned_cols=194  Identities=15%  Similarity=0.157  Sum_probs=127.1

Q ss_pred             hhhhcccCc-ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004254          290 DDVFERFDV-EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (765)
Q Consensus       290 eeiF~~fd~-~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (765)
                      ++....|+. +.||.|++|.||+|++ +|+.||||+..+......                                   
T Consensus        35 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~-----------------------------------   79 (321)
T 2qkw_B           35 EEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGI-----------------------------------   79 (321)
T ss_dssp             CCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHH-----------------------------------
T ss_pred             HHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHH-----------------------------------
Confidence            344445553 7899999999999999 699999998765432110                                   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---cCCCHHHHHHHHH-
Q 004254          368 ASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYAV-  443 (765)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---~g~d~~~ia~~li-  443 (765)
                             -.+.+|++.+..+    . +++|.-..-+.......++||||++|++|.++.....   ..++...+...+. 
T Consensus        80 -------~~~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~  147 (321)
T 2qkw_B           80 -------EEFETEIETLSFC----R-HPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIG  147 (321)
T ss_dssp             -------HHHHHHHHGGGSC----C-CTTBCCEEEECCCTTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHhC----C-CCCEeeEEEEEcCCCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHH
Confidence                   0233444433322    2 2333222222233456799999999999988653221   1244444444333 


Q ss_pred             -HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004254          444 -ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (765)
Q Consensus       444 -~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~  522 (765)
                       ...+..+|..|++|+|+||+||+++.  ++.++|+|||++...........    .....++..+++++....+..++.
T Consensus       148 i~~~l~~lH~~~ivH~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~  221 (321)
T 2qkw_B          148 AARGLHYLHTRAIIHRDVKSINILLDE--NFVPKITDFGISKKGTELDQTHL----STVVKGTLGYIDPEYFIKGRLTEK  221 (321)
T ss_dssp             HHHHHHHHHHTTEECSCCCSTTEEECT--TCCEEECCCTTCEECSSSSCCCC----BCCCEEETTTCCHHHHHHCBCCTH
T ss_pred             HHHHHHHhcCCCeecCCCCHHHEEECC--CCCEEEeeccccccccccccccc----ccccCCCccccCHHHhcCCCCCcc
Confidence             33578899999999999999999985  88999999999986543211000    011224566778887777777788


Q ss_pred             CCHHHHHHHHHHHH
Q 004254          523 GDTTAVRRTAQFFL  536 (765)
Q Consensus       523 ~D~~~l~~~~~~~l  536 (765)
                      .|++++...+.+++
T Consensus       222 ~Di~slG~il~ell  235 (321)
T 2qkw_B          222 SDVYSFGVVLFEVL  235 (321)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             cchHhHHHHHHHHH
Confidence            89999988776655

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.60  E-value=1.7e-15  Score=155.96  Aligned_cols=183  Identities=15%  Similarity=0.080  Sum_probs=125.4

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|++|.||+|+. ++..||||+.+++....                                           -++
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-------------------------------------------~~~   50 (268)
T 3sxs_A           14 KELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSE-------------------------------------------DEF   50 (268)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECBTTBCH-------------------------------------------HHH
T ss_pred             eeeccCCCceEEEEEecCceeEEEEEeccCCCcH-------------------------------------------HHH
Confidence            6899999999999999 67899999985432110                                           124


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~Gf  455 (765)
                      .+|++.+.++.     +++|.-..-+.......++||||++|++|.++.......++...+...+.+  ..+..+|..|+
T Consensus        51 ~~E~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  125 (268)
T 3sxs_A           51 FQEAQTMMKLS-----HPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQF  125 (268)
T ss_dssp             HHHHHHHHHCC-----CTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHHHhCC-----CCCEeeEEEEEccCCceEEEEEccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            45555555542     233322222233445679999999999999876544444565555544433  34788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|+||+||+++.  ++.++|+|||++...........     .....+..+++++....+..++..|++++...+.++
T Consensus       126 ~H~dikp~Nil~~~--~~~~~l~Dfg~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  198 (268)
T 3sxs_A          126 IHRDLAARNCLVDR--DLCVKVSDFGMTRYVLDDQYVSS-----VGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEV  198 (268)
T ss_dssp             EESSCSGGGEEECT--TCCEEECCTTCEEECCTTCEEEC-----CSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHH
T ss_pred             ecCCcCcceEEECC--CCCEEEccCccceecchhhhhcc-----cCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHH
Confidence            99999999999985  88999999999987654321100     001223456777777766677888999998776655


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       199 ~  199 (268)
T 3sxs_A          199 F  199 (268)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.60  E-value=1.2e-14  Score=157.37  Aligned_cols=199  Identities=17%  Similarity=0.191  Sum_probs=124.4

Q ss_pred             ccccccceeEEEEEEe-C------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-K------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||+|++|.||+|++ .      ++.||||+.+.... ....++++++.+..                           
T Consensus        41 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~e~~~~~~~~~---------------------------   92 (364)
T 3op5_A           41 LPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNG-PLFTELKFYQRAAK---------------------------   92 (364)
T ss_dssp             EECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCH-HHHHHHHHHHHHCC---------------------------
T ss_pred             EEEecCCCeEEEEeeecCccccccccceEEEEeeccch-hHHHHHHHHHhhhh---------------------------
Confidence            7899999999999998 2      47899999865432 12222222221100                           


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccC------CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH-
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT------TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE-  444 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s------t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~-  444 (765)
                         ..+..|...+    ..+   .+..+++++....      ...+|||||+ |++|.++.......++...+...+.+ 
T Consensus        93 ---~~~~~e~~~~----~~l---~h~~iv~~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi  161 (364)
T 3op5_A           93 ---PEQIQKWIRT----RKL---KYLGVPKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRI  161 (364)
T ss_dssp             ---HHHHHHHHHH----TTC---SCCCSCCEEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHH----hhc---cCCCCCeEEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHH
Confidence               0111111111    112   2233445543222      2269999999 99999876544345666655554433 


Q ss_pred             -HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHH-HHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004254          445 -SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGL-LEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (765)
Q Consensus       445 -~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l-~~l~~ai~~~D~~~i~~~l~~lG~~~~~  522 (765)
                       ..+..+|..|++|+|+||.||+++...++.++|+|||++..+........ .........+++.++++++......++.
T Consensus       162 ~~~l~~lH~~~iiHrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  241 (364)
T 3op5_A          162 LDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRR  241 (364)
T ss_dssp             HHHHHHHHHTTEECCCCCGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHH
T ss_pred             HHHHHHHHHCCeEEecCCHHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCch
Confidence             34888999999999999999999833378999999999988765421100 0000001126778888888876666777


Q ss_pred             CCHHHHHHHHHHHH
Q 004254          523 GDTTAVRRTAQFFL  536 (765)
Q Consensus       523 ~D~~~l~~~~~~~l  536 (765)
                      .|++++...+.+++
T Consensus       242 ~Di~slG~~l~el~  255 (364)
T 3op5_A          242 GDLEILGYCMIQWL  255 (364)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            89999987776655

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.60  E-value=2.8e-15  Score=163.22  Aligned_cols=186  Identities=17%  Similarity=0.086  Sum_probs=122.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+......                .         ..        ..      .
T Consensus        26 ~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~----------------~---------~~--------~~------~   66 (353)
T 2i0e_A           26 MVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQ----------------D---------DD--------VE------C   66 (353)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHH----------------T---------TC--------HH------H
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhc----------------c---------hH--------HH------H
Confidence            6899999999999999  48999999984321000                0         00        00      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +..|.+.+..    ..+++.|.-..-+.+.....+|||||++|++|.+.... ...++...+...+  +-..+..+|..|
T Consensus        67 ~~~E~~~l~~----~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~g  141 (353)
T 2i0e_A           67 TMVEKRVLAL----PGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQ-VGRFKEPHAVFYAAEIAIGLFFLQSKG  141 (353)
T ss_dssp             HHHHHHHHTC----TTCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHh----cCCCCEEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            2233322221    22334433322233444567999999999999886532 2234444443333  334478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||+||+++.  +|.++|+|||++.........      .....+++.++++++...+..++..|++++...+.+
T Consensus       142 ivHrDlkp~NIll~~--~g~vkL~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e  213 (353)
T 2i0e_A          142 IIYRDLKLDNVMLDS--EGHIKIADFGMCKENIWDGVT------TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYE  213 (353)
T ss_dssp             CBCCCCCGGGEEECT--TSCEEECCCTTCBCCCCTTCC------BCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHH
T ss_pred             EEeccCCHHHEEEcC--CCcEEEEeCCcccccccCCcc------cccccCCccccChhhhcCCCcCCcccccchHHHHHH
Confidence            999999999999985  899999999999864321110      011346788999999887777778899999887766


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       214 ll  215 (353)
T 2i0e_A          214 ML  215 (353)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.59  E-value=3.4e-15  Score=161.52  Aligned_cols=181  Identities=13%  Similarity=0.091  Sum_probs=114.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+.....                                      +      .
T Consensus        59 ~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--------------------------------------~------~   94 (349)
T 2w4o_A           59 SELGRGATSIVYRCKQKGTQKPYALKVLKKTVDK--------------------------------------K------I   94 (349)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEC--------------------------------------------------
T ss_pred             eEEeeCCCEEEEEEEECCCCcEEEEEEeccchhH--------------------------------------H------H
Confidence            6899999999999999  5899999998543110                                      0      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +.+|+..+.++.     +++|.-..-+.+.....++||||++|++|.+.... ...++...+...+.  ...+..+|..|
T Consensus        95 ~~~E~~~l~~l~-----h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~~L~~LH~~~  168 (349)
T 2w4o_A           95 VRTEIGVLLRLS-----HPNIIKLKEIFETPTEISLVLELVTGGELFDRIVE-KGYYSERDAADAVKQILEAVAYLHENG  168 (349)
T ss_dssp             ----CHHHHHCC-----CTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTT-CSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC-----CCCCcceeeeEecCCeEEEEEEeCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            233444444432     23333222233445667999999999999886532 22345444444333  23478899999


Q ss_pred             ccccCCCCCcEEEee-cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~-~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|+||+||+++. .+++.++|+|||++..+.....       .....+++.++++++..-+..++..|++++...+.
T Consensus       169 ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~  241 (349)
T 2w4o_A          169 IVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVL-------MKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITY  241 (349)
T ss_dssp             CCCCCCCGGGEEESSSSTTCCEEECCCC-----------------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHH
T ss_pred             eEecCCCcccEEEecCCCCCCEEEccCccccccCcccc-------cccccCCCCccCHHHhcCCCCCcccchHHHHHHHH
Confidence            999999999999973 2367899999999987654321       11234577888899888777778889999987776


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       242 ell  244 (349)
T 2w4o_A          242 ILL  244 (349)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.59  E-value=4.1e-15  Score=157.40  Aligned_cols=176  Identities=16%  Similarity=0.204  Sum_probs=118.7

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +.||+|++|.||+|+.+|+.||||+......                                            .-.|.
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~--------------------------------------------~~~~~   49 (307)
T 2eva_A           14 EVVGRGAFGVVCKAKWRAKDVAIKQIESESE--------------------------------------------RKAFI   49 (307)
T ss_dssp             EEEECCSSSEEEEEEETTEEEEEEECSSTTH--------------------------------------------HHHHH
T ss_pred             eEeecCCCceEEEEEECCeeEEEEEecChhH--------------------------------------------HHHHH
Confidence            6899999999999999999999998743210                                            01344


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh--cCCCHHHHHHHHH--HHHHHHHHh--
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE--LGVDRKRLGRYAV--ESYLEQILS--  452 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~--~g~d~~~ia~~li--~~~L~qi~~--  452 (765)
                      +|++.+.++.     ++  .+.+++....+..++||||++|++|.++.....  ...+...+...+.  ...+..+|.  
T Consensus        50 ~E~~~l~~l~-----hp--~iv~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~  122 (307)
T 2eva_A           50 VELRQLSRVN-----HP--NIVKLYGACLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQ  122 (307)
T ss_dssp             HHHHHHHHCC-----CT--TBCCEEEBCTTTTEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHhcCC-----CC--CcCeEEEEEcCCcEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCC
Confidence            5555555442     23  345556555677899999999999998754221  1234444443332  234777888  


Q ss_pred             -CCccccCCCCCcEEEeecCCCc-EEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          453 -HGFFHADPHPGNIAVDDVNGGR-LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       453 -~GffHaDpHPGNILV~~~~~g~-l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                       .|++|+|+||.||+++.  ++. ++|+|||++..+......         ..++..+++++....+..++..|++++..
T Consensus       123 ~~~ivH~dlkp~NIll~~--~~~~~kl~Dfg~~~~~~~~~~~---------~~gt~~y~aPE~~~~~~~~~~~Di~slG~  191 (307)
T 2eva_A          123 PKALIHRDLKPPNLLLVA--GGTVLKICDFGTACDIQTHMTN---------NKGSAAWMAPEVFEGSNYSEKCDVFSWGI  191 (307)
T ss_dssp             SSCCCCCCCSGGGEEEET--TTTEEEECCCCC---------------------CCTTSSCHHHHTCCCCCTHHHHHHHHH
T ss_pred             CCCeecCCCChhHEEEeC--CCCEEEEccccccccccccccc---------CCCCCceEChhhhCCCCCCcHHHHHHHHH
Confidence             89999999999999985  555 899999999876543211         23677888888887777777889999987


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       192 il~el~  197 (307)
T 2eva_A          192 ILWEVI  197 (307)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766654

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.59  E-value=3.7e-15  Score=157.96  Aligned_cols=183  Identities=18%  Similarity=0.168  Sum_probs=118.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|++  +|+.||||+.........                                        .+..
T Consensus        63 ~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~----------------------------------------~~~~  102 (311)
T 3p1a_A           63 SRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPK----------------------------------------DRAR  102 (311)
T ss_dssp             EEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHH----------------------------------------HHHH
T ss_pred             heeccCCCeEEEEEEECCCCeEEEEEEecccccChH----------------------------------------HHHH
Confidence            6899999999999999  599999998754322110                                        0111


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +..|...+.+.   . .++++.-..-+++.....+|||||+.| +|.+........++...+...+.  ...+..+|..|
T Consensus       103 ~~~e~~~~~~~---~-~h~~iv~l~~~~~~~~~~~lv~e~~~~-~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~  177 (311)
T 3p1a_A          103 KLAEVGSHEKV---G-QHPCCVRLEQAWEEGGILYLQTELCGP-SLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQG  177 (311)
T ss_dssp             HHHHHHHHHHH---C-CCTTBCCEEEEEEETTEEEEEEECCCC-BHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHh---c-CCCcEEEEEEEEEeCCEEEEEEeccCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            22233222222   1 233333222333445667999999954 66665433333455555444333  34578899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||+||+++.  ++.++|+|||++..++.....       ....+++.++++++.. |..++..|++++...+.+
T Consensus       178 ivH~Dikp~NIll~~--~~~~kl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~e  247 (311)
T 3p1a_A          178 LVHLDVKPANIFLGP--RGRCKLGDFGLLVELGTAGAG-------EVQEGDPRYMAPELLQ-GSYGTAADVFSLGLTILE  247 (311)
T ss_dssp             EECCCCSGGGEEECG--GGCEEECCCTTCEECC-------------CCCCCGGGCCGGGGG-TCCSTHHHHHHHHHHHHH
T ss_pred             EecCCCCHHHEEECC--CCCEEEccceeeeecccCCCC-------cccCCCccccCHhHhc-CCCCchhhHHHHHHHHHH
Confidence            999999999999986  889999999999887654321       1234677788888765 456677899999877665


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       248 l~  249 (311)
T 3p1a_A          248 VA  249 (311)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.59  E-value=2.6e-15  Score=159.91  Aligned_cols=186  Identities=18%  Similarity=0.092  Sum_probs=123.7

Q ss_pred             ccccccceeEEEEEEeC-------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||+|++|.||+|+..       |+.||||+.++.....                                   .    
T Consensus        53 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~----   93 (343)
T 1luf_A           53 RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASAD-----------------------------------M----   93 (343)
T ss_dssp             EEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHH-----------------------------------H----
T ss_pred             eeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHH-----------------------------------H----
Confidence            68999999999999984       3899999986543211                                   0    


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------------
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------------  430 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------------------  430 (765)
                        .-+|.+|++.+.++     .+++|.-..-+.......++||||++|++|.++.....                     
T Consensus        94 --~~~~~~E~~~l~~l-----~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  166 (343)
T 1luf_A           94 --QADFQREAALMAEF-----DNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSP  166 (343)
T ss_dssp             --HHHHHHHHHHHHTC-----CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC--------------------
T ss_pred             --HHHHHHHHHHHHhC-----CCCCEEEEEEEEccCCceEEEEecCCCCcHHHHHHHhCccccccccccccccccccccc
Confidence              11344555555544     23333222222234566799999999999998754311                     


Q ss_pred             --cCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCH
Q 004254          431 --LGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDA  506 (765)
Q Consensus       431 --~g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~  506 (765)
                        ..++...+...+  +...+..+|..|++|+|+||.||+++.  ++.++|+|||++..+........    .....++.
T Consensus       167 ~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~t~  240 (343)
T 1luf_A          167 GPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGE--NMVVKIADFGLSRNIYSADYYKA----DGNDAIPI  240 (343)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECG--GGCEEECCCSCHHHHTGGGCBC--------CCBCG
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEECC--CCeEEEeecCCCcccccCccccc----cCCCcccc
Confidence              223444443333  334478899999999999999999986  78999999999987654321000    11123456


Q ss_pred             HHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          507 DKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       507 ~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      .+++++....+..++..|++++...+.+++
T Consensus       241 ~y~aPE~~~~~~~~~~~Di~slG~il~el~  270 (343)
T 1luf_A          241 RWMPPESIFYNRYTTESDVWAYGVVLWEIF  270 (343)
T ss_dssp             GGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             eecChhhhccCCcCcccccHHHHHHHHHHH
Confidence            678888887777777789999887766554

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.59  E-value=4.6e-15  Score=152.09  Aligned_cols=183  Identities=13%  Similarity=0.061  Sum_probs=125.5

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|++|.||+|+. +++.||||+.++.....                                           -++
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~-------------------------------------------~~~   50 (267)
T 3t9t_A           14 QEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE-------------------------------------------EDF   50 (267)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECTTTBCH-------------------------------------------HHH
T ss_pred             eEecCCCceeEEEEEecCCCeEEEEEccccCCCH-------------------------------------------HHH
Confidence            6899999999999999 78999999985532110                                           023


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~Gf  455 (765)
                      .+|.+.+.++     .++++.-..-+.......+++|||++|++|.++........+...+...+.+  ..+..+|..|+
T Consensus        51 ~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  125 (267)
T 3t9t_A           51 IEEAEVMMKL-----SHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACV  125 (267)
T ss_dssp             HHHHHHHHTC-----CCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhC-----CCCCEeeEEEEEccCCCeEEEEeCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            4455544443     2333322222333456679999999999999876543334555555444333  44888999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|+|+||.||+++.  ++.++|+|||++..........     ......+..+++++....+..++..|++++...+.++
T Consensus       126 ~H~dl~p~Nili~~--~~~~kl~dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  198 (267)
T 3t9t_A          126 IHRDLAARNCLVGE--NQVIKVSDFGMTRFVLDDQYTS-----STGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEV  198 (267)
T ss_dssp             CCSSCCGGGEEECG--GGCEEECCTTGGGGBCCHHHHS-----TTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCchheEEECC--CCCEEEcccccccccccccccc-----cccccccccccChhhhcCCCccchhchhhhHHHHHHH
Confidence            99999999999986  7899999999998776532111     0112234567788887766667778999888766554


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       199 ~  199 (267)
T 3t9t_A          199 F  199 (267)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.59  E-value=3.1e-15  Score=153.93  Aligned_cols=185  Identities=19%  Similarity=0.185  Sum_probs=115.4

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +.||.|++|.||+|+.+|+.||||+.+........                                +..+      .+.
T Consensus        13 ~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~--------------------------------~~~~------~~~   54 (271)
T 3dtc_A           13 EIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDIS--------------------------------QTIE------NVR   54 (271)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEEC------------------------------------------CHH------HHH
T ss_pred             eeeccCCCeEEEEEEEcCCeEEEEEEecCCcccHH--------------------------------HHHH------HHH
Confidence            68999999999999999999999988543221100                                0001      234


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC--
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG--  454 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G--  454 (765)
                      +|++.+..+    . +++|.-..-+.......++||||++|++|.++..  ...++...+...+.  -..+..+|..|  
T Consensus        55 ~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~i~~~l~~~l~~lH~~~~~  127 (271)
T 3dtc_A           55 QEAKLFAML----K-HPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLS--GKRIPPDILVNWAVQIARGMNYLHDEAIV  127 (271)
T ss_dssp             HHHHHHHHC----C-CTTBCCEEEEECCC--CEEEEECCTTEEHHHHHT--SSCCCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHhc----C-CCCEeeEEEEEecCCceEEEEEcCCCCCHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            444444433    2 3333322223333456799999999999988753  33455555444333  33478899999  


Q ss_pred             -ccccCCCCCcEEEeec------CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004254          455 -FFHADPHPGNIAVDDV------NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (765)
Q Consensus       455 -ffHaDpHPGNILV~~~------~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~  527 (765)
                       ++|+|+||+||+++..      .++.++|+|||++..+.......        ..+++.+++++....+..++..|+++
T Consensus       128 ~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~Di~s  199 (271)
T 3dtc_A          128 PIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMS--------AAGAYAWMAPEVIRASMFSKGSDVWS  199 (271)
T ss_dssp             CCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC---------------------CCGGGSCHHHHHHCCCSHHHHHHH
T ss_pred             ceeecCCchHHEEEecccccccccCcceEEccCCcccccccccccC--------CCCccceeCHHHhccCCCCchhhHHH
Confidence             8999999999999741      15679999999998776543321        24677788888887777777789999


Q ss_pred             HHHHHHHHH
Q 004254          528 VRRTAQFFL  536 (765)
Q Consensus       528 l~~~~~~~l  536 (765)
                      +...+.+++
T Consensus       200 lG~~l~~l~  208 (271)
T 3dtc_A          200 YGVLLWELL  208 (271)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887766554

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.59  E-value=4.9e-16  Score=169.75  Aligned_cols=184  Identities=19%  Similarity=0.170  Sum_probs=124.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|++  +|+.||||+.++.....                                         ..-+
T Consensus       120 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------------~~~~  158 (377)
T 3cbl_A          120 EQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPD-----------------------------------------LKAK  158 (377)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHH-----------------------------------------HHTT
T ss_pred             eEeccCCCCeEEEEEEecCCeEEEEEEccccCCHH-----------------------------------------HHHH
Confidence            6899999999999999  59999999986543211                                         0113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~  452 (765)
                      |.+|++.+.++    . +++  +++++.  ......++||||++|++|.++.......++...+...+.+  ..+..+|.
T Consensus       159 ~~~E~~~l~~l----~-hpn--iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~  231 (377)
T 3cbl_A          159 FLQEARILKQY----S-HPN--IVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLES  231 (377)
T ss_dssp             TTHHHHHHTTC----C-CTT--BCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----C-CCC--EEEEEEEEecCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            44566555443    2 233  333332  3345679999999999999876544334565555444433  45888999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      .|++|+|+||.||+++.  ++.++|+|||++...........    .+.......+++++....+..++..|++++...+
T Consensus       232 ~~ivHrDlkp~Nil~~~--~~~~kl~DfG~s~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il  305 (377)
T 3cbl_A          232 KCCIHRDLAARNCLVTE--KNVLKISDFGMSREEADGVYAAS----GGLRQVPVKWTAPEALNYGRYSSESDVWSFGILL  305 (377)
T ss_dssp             TTEECSCCSGGGEEECT--TCCEEECCGGGCEECTTSEEECC----SSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHH
T ss_pred             CCcCCcccCHHHEEEcC--CCcEEECcCCCceecCCCceeec----CCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHH
Confidence            99999999999999985  88999999999987544211000    0001123457788888777777778999988766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       306 ~el~  309 (377)
T 3cbl_A          306 WETF  309 (377)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.59  E-value=3.1e-15  Score=163.32  Aligned_cols=187  Identities=15%  Similarity=0.094  Sum_probs=123.2

Q ss_pred             ccccccceeEEEEEEe---------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL---------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l---------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (765)
                      +.||.|++|+||+|+.         +|..||||+.++...+.   +                                  
T Consensus        87 ~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~---~----------------------------------  129 (370)
T 2psq_A           87 KPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK---D----------------------------------  129 (370)
T ss_dssp             EEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHH---H----------------------------------
T ss_pred             eEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHH---H----------------------------------
Confidence            6899999999999986         24679999986543211   0                                  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCC
Q 004254          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVD  434 (765)
Q Consensus       370 ~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d  434 (765)
                          .-++.+|+..+.++.    .+++|.-..-+.......++||||++|++|.++.....               ..++
T Consensus       130 ----~~~~~~E~~~l~~l~----~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~  201 (370)
T 2psq_A          130 ----LSDLVSEMEMMKMIG----KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMT  201 (370)
T ss_dssp             ----HHHHHHHHHHHHHSC----CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCC
T ss_pred             ----HHHHHHHHHHHHHhc----CCCCEeeEEEEEccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCC
Confidence                013445555555442    23333222222233456799999999999998754321               1234


Q ss_pred             HHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004254          435 RKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  512 (765)
Q Consensus       435 ~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~  512 (765)
                      ...+...+  +...+..+|..|++|+|+||.||+++.  ++.++|+|||++..+........    .......+.+++++
T Consensus       202 ~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~--~~~~kl~DFG~a~~~~~~~~~~~----~~~~~~t~~y~aPE  275 (370)
T 2psq_A          202 FKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTE--NNVMKIADFGLARDINNIDYYKK----TTNGRLPVKWMAPE  275 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECT--TCCEEECCCSSCEETTCCCTTCT----TTTTTSCGGGCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeccccchhhEEECC--CCCEEEccccCCcccCcccceec----ccCCCcccceECHh
Confidence            44444333  334478899999999999999999985  89999999999987654321000    01112345688888


Q ss_pred             HHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          513 MVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       513 l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +..-+..++..|++++...+.+++
T Consensus       276 ~~~~~~~~~~~DvwslG~il~ell  299 (370)
T 2psq_A          276 ALFDRVYTHQSDVWSFGVLMWEIF  299 (370)
T ss_dssp             HHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCcHHHHHHHHHHHHHHH
Confidence            887777777789999987766554

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.59  E-value=4.2e-15  Score=160.97  Aligned_cols=187  Identities=15%  Similarity=0.108  Sum_probs=124.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                 .+....      
T Consensus        15 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------------~~~~~~------   55 (345)
T 3a8x_A           15 RVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVND---------------------------------DEDIDW------   55 (345)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCS---------------------------------HHHHHH------
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcc---------------------------------hHHHHH------
Confidence            6899999999999999  59999999985432111                                 000111      


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|...+.++    .++++|.-..-+.......++||||++|++|.+.... ...++...+...+  +-..+..+|..|
T Consensus        56 ~~~E~~~l~~~----~~hp~iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~aL~~LH~~~  130 (345)
T 3a8x_A           56 VQTEKHVFEQA----SNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQR-QRKLPEEHARFYSAEISLALNYLHERG  130 (345)
T ss_dssp             HHHHHHHHHHT----TTCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhc----CCCCccCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            22333333322    2334433222233345667999999999999886532 2234444433333  334478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||+||+++.  +|.++|+|||++.........      .....+++.++++++......+...|++++...+.+
T Consensus       131 ivHrDlkp~NIll~~--~g~~kL~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e  202 (345)
T 3a8x_A          131 IIYRDLKLDNVLLDS--EGHIKLTDYGMCKEGLRPGDT------TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFE  202 (345)
T ss_dssp             CBCCCCCGGGEEECT--TSCEEECCGGGCBCSCCTTCC------BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHH
T ss_pred             ceecCCCHHHEEECC--CCCEEEEeccccccccCCCCc------ccccCCCccccCccccCCCCCChHHhHHHHHHHHHH
Confidence            999999999999985  899999999999864321100      011246788899998877666777899999887766


Q ss_pred             HHH
Q 004254          535 FLN  537 (765)
Q Consensus       535 ~l~  537 (765)
                      ++.
T Consensus       203 ll~  205 (345)
T 3a8x_A          203 MMA  205 (345)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.59  E-value=9.4e-15  Score=151.60  Aligned_cols=184  Identities=15%  Similarity=0.081  Sum_probs=123.0

Q ss_pred             cccccccceeEEEEEEe-C----CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL-K----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l-~----G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      .+.||+|++|+||+|+. .    +..||||+.++.....                                         
T Consensus        17 ~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------------   55 (281)
T 3cc6_A           17 NRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLD-----------------------------------------   55 (281)
T ss_dssp             EEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHH-----------------------------------------
T ss_pred             EEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCch-----------------------------------------
Confidence            37899999999999997 2    3469999886542111                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQ  449 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~q  449 (765)
                      ..-.|.+|++.+.++.     +++| .+-.++  .....+++|||++|++|.++........+...+...+.  -..+..
T Consensus        56 ~~~~~~~E~~~l~~l~-----h~~i~~~~~~~--~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~  128 (281)
T 3cc6_A           56 NKEKFMSEAVIMKNLD-----HPHIVKLIGII--EEEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAY  128 (281)
T ss_dssp             HHHHHHHHHHHHHHHC-----CTTBCCEEEEE--CSSSCEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC-----CCCcceEEEEE--cCCCCEEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHH
Confidence            0113455666666552     2322 222222  13456999999999999987654444456555544433  345788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..|++|+|+||+||+++.  ++.++|+|||++..+.......     ......+..+++++....+..++..|++++.
T Consensus       129 lH~~~i~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG  201 (281)
T 3cc6_A          129 LESINCVHRDIAVRNILVAS--PECVKLGDFGLSRYIEDEDYYK-----ASVTRLPIKWMSPESINFRRFTTASDVWMFA  201 (281)
T ss_dssp             HHHTTCCCCCCSGGGEEEEE--TTEEEECCCCGGGCC--------------CCCCCGGGCCHHHHHHCCCCHHHHHHHHH
T ss_pred             HHHCCcccCCCccceEEECC--CCcEEeCccCCCcccccccccc-----cccCCCCcceeCchhhccCCCCchhccHHHH
Confidence            99999999999999999987  8899999999998876533211     1122345667888888777777778999988


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       202 ~il~~ll  208 (281)
T 3cc6_A          202 VCMWEIL  208 (281)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766554

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.59  E-value=6.2e-15  Score=153.19  Aligned_cols=183  Identities=16%  Similarity=0.154  Sum_probs=114.4

Q ss_pred             ccccccceeEEEEEEe-C----CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-K----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~----G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||.|++|+||+|+. .    +..||||+.+......                                   ..     
T Consensus        21 ~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~-----   60 (281)
T 1mp8_A           21 RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDS-----------------------------------VR-----   60 (281)
T ss_dssp             EEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHH-----------------------------------HH-----
T ss_pred             eEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHH-----------------------------------HH-----
Confidence            6899999999999998 2    4679999875432111                                   01     


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeec-cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  450 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e-~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi  450 (765)
                       -.+.+|+..+.++    . +++  +++++.- .....++||||++|++|.++.......++...+...+  +...+..+
T Consensus        61 -~~~~~e~~~l~~l----~-h~~--iv~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~l  132 (281)
T 1mp8_A           61 -EKFLQEALTMRQF----D-HPH--IVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYL  132 (281)
T ss_dssp             -HHHHHHHHHHHTC----C-CTT--BCCEEEEECSSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhC----C-CCc--cceEEEEEccCccEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence             1244555554443    2 232  3333322 2355699999999999998765444446665554443  33448889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      |..|++|+|+||+||+++.  ++.++|+|||++..+.......     ......++.+++++....+..++..|++++..
T Consensus       133 H~~~i~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  205 (281)
T 1mp8_A          133 ESKRFVHRDIAARNVLVSS--NDCVKLGDFGLSRYMEDSTYYK-----ASKGKLPIKWMAPESINFRRFTSASDVWMFGV  205 (281)
T ss_dssp             HHTTCCCSCCSGGGEEEEE--TTEEEECC------------------------CCGGGCCHHHHHHCCCSHHHHHHHHHH
T ss_pred             HhCCeecccccHHHEEECC--CCCEEECccccccccCcccccc-----cccCCCcccccChhhcccCCCCCccCchHHHH
Confidence            9999999999999999997  8899999999998876532211     11123345678888887777777789998887


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       206 ~l~ell  211 (281)
T 1mp8_A          206 CMWEIL  211 (281)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665554

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.59  E-value=6.6e-15  Score=152.92  Aligned_cols=179  Identities=12%  Similarity=0.085  Sum_probs=120.7

Q ss_pred             ccccccceeEEEEEEe--CC-------eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KG-------EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G-------~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (765)
                      +.||.|++|.||+|+.  +|       ..||+|+........                                    . 
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~------------------------------------~-   56 (289)
T 4fvq_A           14 ESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNY------------------------------------S-   56 (289)
T ss_dssp             EEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGG------------------------------------H-
T ss_pred             eeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHH------------------------------------H-
Confidence            6899999999999998  34       579999884422111                                    0 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHH
Q 004254          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYL  447 (765)
Q Consensus       370 ~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L  447 (765)
                           -.+.+|++.+.++.     +++|.-..-+.......++||||++|++|.++.......++...+...+  +-..+
T Consensus        57 -----~~~~~E~~~l~~l~-----h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L  126 (289)
T 4fvq_A           57 -----ESFFEAASMMSKLS-----HKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAM  126 (289)
T ss_dssp             -----HHHHHHHHHHHTSC-----CTTBCCEEEEECCTTCCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHhCC-----CCCEeEEEEEEEeCCCCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence                 12344555444432     3333222222233566799999999999999765443335555444333  33458


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCc--------EEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CC
Q 004254          448 EQILSHGFFHADPHPGNIAVDDVNGGR--------LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GV  518 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~~~g~--------l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~  518 (765)
                      ..+|..|++|+|+||+||+++.  ++.        ++|+|||++....+...          ..++..++++++... +.
T Consensus       127 ~~LH~~~ivH~Dlkp~NIll~~--~~~~~~~~~~~~kl~Dfg~~~~~~~~~~----------~~~~~~y~aPE~~~~~~~  194 (289)
T 4fvq_A          127 HFLEENTLIHGNVCAKNILLIR--EEDRKTGNPPFIKLSDPGISITVLPKDI----------LQERIPWVPPECIENPKN  194 (289)
T ss_dssp             HHHHHTTCCCCCCCGGGEEEEE--CCBGGGTBCCEEEECCCCSCTTTSCHHH----------HHHTTTTSCHHHHHCGGG
T ss_pred             HHHhhCCeECCCcCcceEEEec--CCcccccccceeeeccCcccccccCccc----------cCCcCcccCHHHhCCCCC
Confidence            8899999999999999999986  554        99999999987765432          123555777877765 55


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 004254          519 LVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       519 ~~~~~D~~~l~~~~~~~l  536 (765)
                      .++..|++++...+.+++
T Consensus       195 ~~~~~DiwslG~il~el~  212 (289)
T 4fvq_A          195 LNLATDKWSFGTTLWEIC  212 (289)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHH
Confidence            566779999887766554

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.59  E-value=2.2e-15  Score=156.16  Aligned_cols=184  Identities=14%  Similarity=0.158  Sum_probs=116.4

Q ss_pred             cccCc-ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          294 ERFDV-EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      ..|.. +.||+|++|.||+|+.+|+.||||+.++....                                      +   
T Consensus        21 ~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~--------------------------------------~---   59 (278)
T 1byg_A           21 KELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATA--------------------------------------Q---   59 (278)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC----------------------------------------H---
T ss_pred             hhceEEeEEecCCCceEEEEEEcCCEEEEEEecchhHH--------------------------------------H---
Confidence            34433 78999999999999999999999987543100                                      0   


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc-CCCHHHHHHHH--HHHHHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRYA--VESYLEQ  449 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~-g~d~~~ia~~l--i~~~L~q  449 (765)
                         .+.+|++.+.++    .+..-+.+-..+.+.....++||||++|++|.++...... .++...+...+  +...+..
T Consensus        60 ---~~~~E~~~l~~l----~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~  132 (278)
T 1byg_A           60 ---AFLAEASVMTQL----RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEY  132 (278)
T ss_dssp             ---HHHHTHHHHTTC----CCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhC----CCCCEeeEEEEEEcCCCceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence               233444444333    2222223333333333467999999999999987543221 13444443333  2345788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..|++|+|+||.||+++.  ++.++|+|||++...+.....         ...+..+++++....+..++..|++++.
T Consensus       133 lH~~~i~H~dlkp~Nil~~~--~~~~~l~Dfg~~~~~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~~Di~slG  201 (278)
T 1byg_A          133 LEGNNFVHRDLAARNVLVSE--DNVAKVSDFGLTKEASSTQDT---------GKLPVKWTAPEALREKKFSTKSDVWSFG  201 (278)
T ss_dssp             HHHTTCCCSCCSGGGEEECT--TSCEEECCCCC---------------------CCTTTSCHHHHHHCCCCHHHHHHHHH
T ss_pred             HHhCCccccCCCcceEEEeC--CCcEEEeeccccccccccccC---------CCccccccCHHHhCCCCCCchhcHHHHH
Confidence            99999999999999999985  889999999998876543221         1235567777777766667778999888


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       202 ~il~~l~  208 (278)
T 1byg_A          202 ILLWEIY  208 (278)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665554

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.59  E-value=2.6e-15  Score=163.10  Aligned_cols=187  Identities=14%  Similarity=0.140  Sum_probs=126.1

Q ss_pred             cccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      ..|+. +.||.|++|.||+|+.  +|+.||||+.++.....                .         ..           
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~----------------~---------~~-----------   84 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVK----------------L---------KQ-----------   84 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH----------------T---------TC-----------
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhcc----------------H---------HH-----------
Confidence            34443 7899999999999998  59999999984321000                0         00           


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHH
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLE  448 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~  448 (765)
                         .-.+.+|.+.+..+     ++++|.-..-+.......++||||++|++|.+.... ...++...+...+  +-..+.
T Consensus        85 ---~~~~~~E~~~l~~l-----~hp~iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~  155 (350)
T 1rdq_E           85 ---IEHTLNEKRILQAV-----NFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFE  155 (350)
T ss_dssp             ---HHHHHHHHHHHTTC-----CCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HCCCCHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHhC-----CCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHH
Confidence               01223344333322     233332222222334567999999999999886532 2234544443333  234478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      .+|..|++|+|+||+||+++.  +|.++|+|||++..+.....         ...+++.++++++......++..|++++
T Consensus       156 ~LH~~~ivHrDlkp~NIll~~--~g~~kL~DFg~a~~~~~~~~---------~~~gt~~y~aPE~~~~~~~~~~~Diwsl  224 (350)
T 1rdq_E          156 YLHSLDLIYRDLKPENLLIDQ--QGYIQVTDFGFAKRVKGRTW---------TLCGTPEALAPEIILSKGYNKAVDWWAL  224 (350)
T ss_dssp             HHHHTTEECCCCSGGGEEECT--TSCEEECCCTTCEECSSCBC---------CCEECGGGCCHHHHTTCCBCTHHHHHHH
T ss_pred             HHHHCCcccccCccceEEECC--CCCEEEcccccceeccCCcc---------cccCCccccCHHHhcCCCCCCcCCEecc
Confidence            899999999999999999985  89999999999998765421         1346788899998877667778899999


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      ...+.+++
T Consensus       225 G~il~ell  232 (350)
T 1rdq_E          225 GVLIYEMA  232 (350)
T ss_dssp             HHHHHHHH
T ss_pred             cHhHhHHh
Confidence            87776654

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.59  E-value=3.1e-15  Score=165.83  Aligned_cols=190  Identities=15%  Similarity=0.139  Sum_probs=126.3

Q ss_pred             ccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          295 RFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       295 ~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      .|+. +.||.|++|.||+|+.  +|+.||||+.+......-.                         ..        .  
T Consensus        53 ~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~-------------------------~~--------~--   97 (396)
T 4dc2_A           53 DFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDE-------------------------DI--------D--   97 (396)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC-----------------------------C--------C--
T ss_pred             HcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHH-------------------------HH--------H--
Confidence            3443 6899999999999999  5899999998543211100                         00        0  


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQ  449 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~q  449 (765)
                          .+..|...+.++.    ++++|.-..-+.......+|||||++|++|.+.... ...++...+...+  +-..+..
T Consensus        98 ----~~~~E~~il~~~~----~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~aL~~  168 (396)
T 4dc2_A           98 ----WVQTEKHVFEQAS----NHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQR-QRKLPEEHARFYSAEISLALNY  168 (396)
T ss_dssp             ----HHHHHHHHHHHHT----TCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhcC----CCCCcCeeEEEEEECCEEEEEEEcCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHH
Confidence                1223333333331    234333222233345567999999999999876532 2334444433333  3345888


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccC-hhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS-PNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~-~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      +|..|++|+|+||+|||++.  +|.++|+|||++.... ....       .....+++.+++++++.....+...|++++
T Consensus       169 LH~~givHrDLKp~NILl~~--~g~ikL~DFGla~~~~~~~~~-------~~~~~gt~~Y~aPE~l~~~~~~~~~Diwsl  239 (396)
T 4dc2_A          169 LHERGIIYRDLKLDNVLLDS--EGHIKLTDYGMCKEGLRPGDT-------TSTFCGTPNYIAPEILRGEDYGFSVDWWAL  239 (396)
T ss_dssp             HHHTTCBCCCCCGGGEEECT--TSCEEECCCTTCBCCCCTTCC-------BCCCCBCGGGCCHHHHTTCCBCTHHHHHHH
T ss_pred             HHHCCEEeccCCHHHEEECC--CCCEEEeecceeeecccCCCc-------cccccCCcccCCchhhcCCCCChHHHHHHH
Confidence            99999999999999999986  8999999999998632 2111       111346888999999887777778899999


Q ss_pred             HHHHHHHHH
Q 004254          529 RRTAQFFLN  537 (765)
Q Consensus       529 ~~~~~~~l~  537 (765)
                      ...+.+++.
T Consensus       240 Gvllyell~  248 (396)
T 4dc2_A          240 GVLMFEMMA  248 (396)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            887776653

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.58  E-value=1.9e-15  Score=169.49  Aligned_cols=187  Identities=17%  Similarity=0.175  Sum_probs=124.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|++  +|+.||||+.+...                .....                       ..-.
T Consensus        80 ~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~----------------~~~~~-----------------------~~~~  120 (437)
T 4aw2_A           80 KVIGRGAFGEVAVVKLKNADKVFAMKILNKWE----------------MLKRA-----------------------ETAC  120 (437)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEHHH----------------HHHTT-----------------------TTCC
T ss_pred             EEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHH----------------hhhHH-----------------------HHHH
Confidence            6899999999999999  58999999884210                00000                       0001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +..|...+..+     ++++|.-..-+.+.....+|||||++|++|.++.......++...+...+  +-..+..+|..|
T Consensus       121 ~~~E~~il~~~-----~hp~Iv~l~~~~~~~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~g  195 (437)
T 4aw2_A          121 FREERDVLVNG-----DSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLH  195 (437)
T ss_dssp             HHHHHHHHHHS-----CTTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC-----CCCCEEEEEEEEeeCCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            33444434332     23333322223344566799999999999998764323345544443333  334578899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-----cCCCCCCCCHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-----MGVLVPTGDTTAVR  529 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~-----lG~~~~~~D~~~l~  529 (765)
                      ++|+|+||+|||++.  +|.++|+|||++..+.......     .....+++.+++++++.     .+..++..|++++.
T Consensus       196 iiHrDLKp~NILl~~--~g~vkL~DFGla~~~~~~~~~~-----~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlG  268 (437)
T 4aw2_A          196 YVHRDIKPDNILMDM--NGHIRLADFGSCLKLMEDGTVQ-----SSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLG  268 (437)
T ss_dssp             EECCCCSGGGEEECT--TSCEEECCCTTCEECCTTSCEE-----CCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHH
T ss_pred             eEecccCHHHeeEcC--CCCEEEcchhhhhhcccCCCcc-----cccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHH
Confidence            999999999999986  8999999999998765432110     01124688889999886     34566778999998


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       269 vil~ell  275 (437)
T 4aw2_A          269 VCMYEML  275 (437)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776665

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.58  E-value=3.1e-15  Score=160.27  Aligned_cols=180  Identities=17%  Similarity=0.199  Sum_probs=123.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+......                 .        ..        .+      .
T Consensus        12 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~-----------------~--------~~--------~~------~   52 (318)
T 1fot_A           12 RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVR-----------------L--------KQ--------VE------H   52 (318)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH-----------------T--------TC--------HH------H
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh-----------------h--------hH--------HH------H
Confidence            6899999999999999  69999999984321100                 0        00        00      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~  452 (765)
                      +.+|...+..    + ++++  +++++.  ......++||||++|++|.++... ...++...+...+  +-..+..+|.
T Consensus        53 ~~~E~~~l~~----l-~hp~--Iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~  124 (318)
T 1fot_A           53 TNDERLMLSI----V-THPF--IIRMWGTFQDAQQIFMIMDYIEGGELFSLLRK-SQRFPNPVAKFYAAEVCLALEYLHS  124 (318)
T ss_dssp             HHHHHHHHHS----C-CBTT--BCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-TSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhh----C-CCCC--CceEeEEEEeCCEEEEEEeCCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            2233333322    2 2233  233332  334567999999999999987542 2234444333322  3345788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      .|++|+|+||+||+++.  +|.++|+|||++..++....         ...+++.++++++...+..+...|++++...+
T Consensus       125 ~~ivHrDlkp~NIll~~--~g~~kL~Dfg~a~~~~~~~~---------~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il  193 (318)
T 1fot_A          125 KDIIYRDLKPENILLDK--NGHIKITDFGFAKYVPDVTY---------TLCGTPDYIAPEVVSTKPYNKSIDWWSFGILI  193 (318)
T ss_dssp             TTEECCCCCGGGEEECT--TSCEEECCCSSCEECSSCBC---------CCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHH
T ss_pred             CCccccCCChheEEEcC--CCCEEEeecCcceecCCccc---------cccCCccccCHhHhcCCCCCcccchhhhHHHH
Confidence            99999999999999985  89999999999988765321         13467888999988877777888999998877


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       194 ~ell  197 (318)
T 1fot_A          194 YEML  197 (318)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6665

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.58  E-value=1.8e-15  Score=158.86  Aligned_cols=216  Identities=13%  Similarity=0.087  Sum_probs=134.0

Q ss_pred             hhCCCCCChHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHH
Q 004254          266 QDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEY  345 (765)
Q Consensus       266 qd~vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~  345 (765)
                      +...+.+++.++.++..     .+.+...+...+.||+|++|.||+|+.+|+.||||+..+.....              
T Consensus         9 ~~~~~~~~~~~l~~~~~-----~f~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~--------------   69 (307)
T 2nru_A            9 DTRFHSFSFYELKNVTN-----NFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDIT--------------   69 (307)
T ss_dssp             --CCEECCHHHHHHHTT-----TTCCSBTTTTCCEEEECSSEEEEEEESSSCEEEEEEECCCTTSC--------------
T ss_pred             CCCCCcccHHHHHHHHc-----ccccccccccCCccccCCCeEEEEEEECCceEEEEEEecccCcc--------------
Confidence            44566777777655432     22222222334789999999999999999999999886533111              


Q ss_pred             HhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhh
Q 004254          346 LQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRI  425 (765)
Q Consensus       346 l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~  425 (765)
                                    .    ++..+      .+.+|++.+..+.     +++|.-..-+.......+++|||++|++|.++
T Consensus        70 --------------~----~~~~~------~~~~E~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~  120 (307)
T 2nru_A           70 --------------T----EELKQ------QFDQEIKVMAKCQ-----HENLVELLGFSSDGDDLCLVYVYMPNGSLLDR  120 (307)
T ss_dssp             --------------T----TTHHH------HHHHHHHHHHHCC-----CTTBCCEEEEECSSSSCEEEEECCTTCBHHHH
T ss_pred             --------------h----HHHHH------HHHHHHHHHHhcC-----CCCeEEEEEEEecCCceEEEEEecCCCcHHHH
Confidence                          0    00111      2344555444442     23332222222334567999999999999886


Q ss_pred             hhhhh--cCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHH
Q 004254          426 QSLDE--LGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGI  501 (765)
Q Consensus       426 ~~l~~--~g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai  501 (765)
                      .....  ..++...+...+  +...+..+|..|++|+|+||.||+++.  ++.++|+|||++...........    ...
T Consensus       121 l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~  194 (307)
T 2nru_A          121 LSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDE--AFTAKISDFGLARASEKFAQTVM----TSR  194 (307)
T ss_dssp             HHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECT--TCCEEECCCTTCEECCSCSSCEE----CSS
T ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcC--CCcEEEeeccccccccccccccc----ccc
Confidence            54222  224444443333  334478899999999999999999985  88999999999887654211000    001


Q ss_pred             hhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          502 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       502 ~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ..+++.+++++... |..++..|++++...+.+++
T Consensus       195 ~~g~~~y~aPE~~~-~~~~~~~Dv~slG~il~~l~  228 (307)
T 2nru_A          195 IVGTTAYMAPEALR-GEITPKSDIYSFGVVLLEII  228 (307)
T ss_dssp             CCSCGGGCCHHHHT-TEECTHHHHHHHHHHHHHHH
T ss_pred             cCCCcCcCChHHhc-CCCCccchhHHHHHHHHHHH
Confidence            23466677777664 44566779999887766554

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.58  E-value=3.1e-15  Score=159.56  Aligned_cols=187  Identities=14%  Similarity=0.124  Sum_probs=123.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+....-..                                            -+
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--------------------------------------------~~   50 (330)
T 2izr_A           15 KKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRA--------------------------------------------PQ   50 (330)
T ss_dssp             EECCC-CTTSEEEEEETTTTEEEEEEEEETTCSS--------------------------------------------CC
T ss_pred             EEeeccCCceEEEEEECCCCcEEEEEEeccccch--------------------------------------------HH
Confidence            6899999999999997  6999999987432110                                            02


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|++.+.++.    +++++.-..-+.......++||||+ |++|.++.......++...+...+.+  ..+..+|..|
T Consensus        51 ~~~E~~~l~~l~----~h~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~  125 (330)
T 2izr_A           51 LHLEYRFYKQLG----SGDGIPQVYYFGPCGKYNAMVLELL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKN  125 (330)
T ss_dssp             HHHHHHHHHHHC----SCTTSCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhh----CCCCCCEEEEEEecCCccEEEEEeC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            344555555442    2333322222233345679999999 99999876543445665555444433  3488899999


Q ss_pred             ccccCCCCCcEEEeecCCCc-----EEEEeecceeccChhhHHHHHH-HHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGR-----LIFYDFGMMGSISPNIREGLLE-AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~-----l~LiDFGlv~~L~~~~r~~l~~-l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      ++|+|+||.||+++.  ++.     ++|+|||++..+.......... .-.....+++.+++++....+..++..|++++
T Consensus       126 iiHrDlkp~Nill~~--~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~sl  203 (330)
T 2izr_A          126 LIYRDVKPENFLIGR--PGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEAL  203 (330)
T ss_dssp             EECCCCCGGGEEECC--GGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHH
T ss_pred             eeccCCCHHHeeecc--CCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHH
Confidence            999999999999985  555     9999999998764432100000 00011245678888888877666777899999


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      ...+.+++
T Consensus       204 G~il~ell  211 (330)
T 2izr_A          204 GHMFMYFL  211 (330)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            87776655

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.58  E-value=5.2e-15  Score=153.40  Aligned_cols=183  Identities=19%  Similarity=0.174  Sum_probs=121.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+..+.....                                 .+.      +-.
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------------------~~~------~~~   55 (279)
T 3fdn_A           15 RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK---------------------------------AGV------EHQ   55 (279)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH---------------------------------HTC------HHH
T ss_pred             eEEecCCCeEEEEEEEccCCcEEEEEEEeccccch---------------------------------hhH------HHH
Confidence            7899999999999998  58899999874321100                                 000      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|+..+.++    . +++|.-..-+.......++||||++|++|.+.... ...++...+...+  +...+..+|..|
T Consensus        56 ~~~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~  129 (279)
T 3fdn_A           56 LRREVEIQSHL----R-HPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHSKR  129 (279)
T ss_dssp             HHHHHHHHTTC----C-CTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHcC----C-CCCCcchhheEecCCEEEEEEecCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            33444433332    2 23333222233445667999999999999886532 2334544444333  234478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||+||+++.  ++.++|+|||++..........        ..++..++++++...+..++..|++++...+.+
T Consensus       130 i~H~dlkp~Nili~~--~~~~~l~Dfg~~~~~~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~  199 (279)
T 3fdn_A          130 VIHRDIKPENLLLGS--AGELKIADFGWSVHAPSSRRTD--------LCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYE  199 (279)
T ss_dssp             CEECCCCGGGEEECT--TSCEEECSCCEESCC----------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred             EecccCChHhEEEcC--CCCEEEEeccccccCCcccccc--------cCCCCCccCHhHhccCCCCccchhHhHHHHHHH
Confidence            999999999999985  8899999999987765543221        245777888888877777778899999877665


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       200 l~  201 (279)
T 3fdn_A          200 FL  201 (279)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.58  E-value=6.7e-15  Score=157.47  Aligned_cols=186  Identities=15%  Similarity=0.109  Sum_probs=117.7

Q ss_pred             ccccccceeEEEEEEe-----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||+|++|.||+|+.     +|+.||||+.+......-.                                      ..
T Consensus        23 ~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~--------------------------------------~~   64 (327)
T 3a62_A           23 RVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNA--------------------------------------KD   64 (327)
T ss_dssp             EEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC----------------------------------------------
T ss_pred             EEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhh--------------------------------------hH
Confidence            6899999999999987     4899999998654211000                                      00


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  451 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~  451 (765)
                      .-.+.+|...+..+    . +++|.-..-+.......++||||++|++|.+.... ...+....+...+  +...+..+|
T Consensus        65 ~~~~~~E~~~l~~l----~-hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~al~~lH  138 (327)
T 3a62_A           65 TAHTKAERNILEEV----K-HPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLER-EGIFMEDTACFYLAEISMALGHLH  138 (327)
T ss_dssp             ------HHHHHHHC----C-CTTBCCEEEEEECSSCEEEEEECCTTEEHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC----C-CCCccceeEEEEcCCEEEEEEeCCCCCcHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            01233444444443    2 33332222223345677999999999999886532 2234444433333  334578899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..|++|+|+||+||+++.  ++.++|+|||++.........      .....+++.++++++...+..+...|++++...
T Consensus       139 ~~~ivH~Dlkp~Nill~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~i  210 (327)
T 3a62_A          139 QKGIIYRDLKPENIMLNH--QGHVKLTDFGLCKESIHDGTV------THTFCGTIEYMAPEILMRSGHNRAVDWWSLGAL  210 (327)
T ss_dssp             HTTCCCCCCCTTTEEECT--TSCEEECCCSCC----------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHH
T ss_pred             hCCEEcccCCHHHeEECC--CCcEEEEeCCcccccccCCcc------ccccCCCcCccCHhhCcCCCCCCcccchhHHHH
Confidence            999999999999999985  889999999998765432210      112346778888988877667777899999877


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       211 l~el~  215 (327)
T 3a62_A          211 MYDML  215 (327)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.58  E-value=2.1e-15  Score=161.90  Aligned_cols=188  Identities=15%  Similarity=0.084  Sum_probs=122.8

Q ss_pred             cccccccceeEEEEEEe-------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      .+.||.|++|.||+|++       +|+.||||+.+......                                       
T Consensus        27 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~---------------------------------------   67 (359)
T 3vhe_A           27 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS---------------------------------------   67 (359)
T ss_dssp             EEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHH---------------------------------------
T ss_pred             ceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHH---------------------------------------
Confidence            37899999999999984       36899999986543211                                       


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhc------------------
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL------------------  431 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~------------------  431 (765)
                        ..-.+.+|++.+.++.    ++++| .+-..+.+.....+++|||++|++|.++......                  
T Consensus        68 --~~~~~~~E~~~l~~l~----~hpniv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~  141 (359)
T 3vhe_A           68 --EHRALMSELKILIHIG----HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDY  141 (359)
T ss_dssp             --HHHHHHHHHHHHHHHC----CCTTBCCEEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------
T ss_pred             --HHHHHHHHHHHHHhhc----CCcceeeeeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhccccc
Confidence              0113455666555552    22332 2222222323447999999999999987543211                  


Q ss_pred             -----------------------------------------------CCCHHHHHHHH--HHHHHHHHHhCCccccCCCC
Q 004254          432 -----------------------------------------------GVDRKRLGRYA--VESYLEQILSHGFFHADPHP  462 (765)
Q Consensus       432 -----------------------------------------------g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHP  462 (765)
                                                                     .++...+...+  +...+..+|..|++|+|+||
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp  221 (359)
T 3vhe_A          142 VGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAA  221 (359)
T ss_dssp             ------------------------------------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSG
T ss_pred             ccccchhhhccccccCccccccccccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCCh
Confidence                                                           03333333332  23447889999999999999


Q ss_pred             CcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          463 GNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       463 GNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      .||+++.  ++.++|+|||++..+........    .....++..++++++...+..++..|++++...+.+++
T Consensus       222 ~NIll~~--~~~~kl~Dfg~a~~~~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell  289 (359)
T 3vhe_A          222 RNILLSE--KNVVKICDFGLARDIYKDPDYVR----KGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIF  289 (359)
T ss_dssp             GGEEECG--GGCEEECCCGGGSCTTSCTTCEE----C--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHT
T ss_pred             hhEEEcC--CCcEEEEeccceeeecccccchh----ccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHH
Confidence            9999986  78999999999987644321100    11123456678888887777777789999887665553

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.58  E-value=5e-15  Score=154.15  Aligned_cols=189  Identities=16%  Similarity=0.118  Sum_probs=125.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|+||+|+.  +|+.||||+........                                            +
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--------------------------------------------~   50 (296)
T 3uzp_A           15 RKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHP--------------------------------------------Q   50 (296)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEEESCSSCC--------------------------------------------H
T ss_pred             EEEccCCCeEEEEEEEcCCCcEEEEEEecCCcchh--------------------------------------------H
Confidence            6899999999999997  69999999874432110                                            2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|++.+..+.    +.+.+.....+.......++||||+ |++|.++.......++...+...+.+  ..+..+|..|
T Consensus        51 ~~~e~~~l~~l~----~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~  125 (296)
T 3uzp_A           51 LHIESKIYKMMQ----GGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKN  125 (296)
T ss_dssp             HHHHHHHHHHHT----TSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhh----cCCCCCccccccCCCCceEEEEEec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            344555454443    2233333333334455669999999 88999876533444565555444333  3478899999


Q ss_pred             ccccCCCCCcEEEee-cCCCcEEEEeecceeccChhhHHHHHH-HHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLE-AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       455 ffHaDpHPGNILV~~-~~~g~l~LiDFGlv~~L~~~~r~~l~~-l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      ++|+|+||.||+++. ..++.++|+|||++..+.......... .......++..+++++...-+..++..|++++...+
T Consensus       126 ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il  205 (296)
T 3uzp_A          126 FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVL  205 (296)
T ss_dssp             EECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             eeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHH
Confidence            999999999999951 137889999999998775532100000 000112456777888888776667778999998776


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       206 ~~l~  209 (296)
T 3uzp_A          206 MYFN  209 (296)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.58  E-value=4.9e-15  Score=166.06  Aligned_cols=182  Identities=17%  Similarity=0.185  Sum_probs=126.5

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|++|.||+|++ ++..||||+.+++....                                           -+|
T Consensus       194 ~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~~-------------------------------------------~~~  230 (454)
T 1qcf_A          194 KKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSV-------------------------------------------EAF  230 (454)
T ss_dssp             EEEECCSSEEEEEEEETTTEEEEEEEECTTSBCH-------------------------------------------HHH
T ss_pred             EEcccCCceEEEEEEECCccEEEEEEecCCCccH-------------------------------------------HHH
Confidence            6899999999999999 68999999986642110                                           134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      .+|++.+.++    .+..-+.+-.++  .....++||||++|++|.++.... ....+...+...+  +...+..+|..|
T Consensus       231 ~~E~~~l~~l----~h~~iv~l~~~~--~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~  304 (454)
T 1qcf_A          231 LAEANVMKTL----QHDKLVKLHAVV--TKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN  304 (454)
T ss_dssp             HHHHHHHTTC----CCTTBCCEEEEE--CSSSCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhC----CCCCEeeEEEEE--eCCccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            5566555544    222222332322  145679999999999999876432 2234544444333  334478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||.|||++.  ++.++|+|||++..+.......     .........+++++....+..+...|++++...+.+
T Consensus       305 ivHrDlkp~Nill~~--~~~~kl~DFG~a~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~e  377 (454)
T 1qcf_A          305 YIHRDLRAANILVSA--SLVCKIADFGLARVIEDNEYTA-----REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLME  377 (454)
T ss_dssp             CCCSSCSGGGEEECT--TCCEEECSTTGGGGBCCHHHHT-----TCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHEEECC--CCcEEEeeCCCceEcCCCceec-----cCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHH
Confidence            999999999999985  8899999999999876543211     011123456888888888877888899999877655


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       378 l~  379 (454)
T 1qcf_A          378 IV  379 (454)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.58  E-value=2.3e-15  Score=162.72  Aligned_cols=185  Identities=15%  Similarity=0.125  Sum_probs=123.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|+.  +|+.||||+.+.....                ..         ..              .-.
T Consensus        11 ~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~----------------~~---------~~--------------~~~   51 (337)
T 1o6l_A           11 KLLGKGTFGKVILVREKATGRYYAMKILRKEVII----------------AK---------DE--------------VAH   51 (337)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHH----------------HT---------TC--------------HHH
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhh----------------hh---------hH--------------HHH
Confidence            6899999999999998  5999999998432100                00         00              012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|.+.+..    + .++++.-..-+.......++||||++|++|.+.... ...++...+...+  +-..+..+|..|
T Consensus        52 ~~~E~~~l~~----l-~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~  125 (337)
T 1o6l_A           52 TVTESRVLQN----T-RHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSR-ERVFTEERARFYGAEIVSALEYLHSRD  125 (337)
T ss_dssp             HHHHHHHHHS----C-CCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHh----C-CCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            2344444332    2 234333222223344567999999999999876532 2234444433332  334578899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||+||+++.  +|.++|+|||++.........      .....+++.++++++..-+..++..|++++...+.+
T Consensus       126 ivHrDlkp~NIll~~--~g~vkL~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e  197 (337)
T 1o6l_A          126 VVYRDIKLENLMLDK--DGHIKITDFGLCKEGISDGAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE  197 (337)
T ss_dssp             CBCCCCCGGGEEECT--TSCEEECCCTTCBCSCCTTCC------BCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHH
T ss_pred             eecCcCCHHHEEECC--CCCEEEeeccchhhcccCCCc------ccccccChhhCChhhhcCCCCCchhhcccchhHHHH
Confidence            999999999999985  899999999999864322110      011346788888988877667788899999887766


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       198 ll  199 (337)
T 1o6l_A          198 MM  199 (337)
T ss_dssp             HH
T ss_pred             Hh
Confidence            55

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.57  E-value=4.2e-15  Score=157.76  Aligned_cols=193  Identities=14%  Similarity=0.164  Sum_probs=122.9

Q ss_pred             hhhhcccCc-ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004254          290 DDVFERFDV-EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (765)
Q Consensus       290 eeiF~~fd~-~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (765)
                      +.+...|.. +.||.|++|.||+|+. +|+.||||+.+......                                  ..
T Consensus        17 q~l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~   62 (311)
T 3niz_A           17 QGLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDE----------------------------------GI   62 (311)
T ss_dssp             ECSSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC----------------------------------------CH
T ss_pred             cchHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccc----------------------------------hh
Confidence            345555553 7899999999999999 79999999885432110                                  00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHH
Q 004254          368 ASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VES  445 (765)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~  445 (765)
                      .      -.+.+|++.+.++.     +++|.-..-+.......++||||++| .+.+.......+++...+...+  +-.
T Consensus        63 ~------~~~~~E~~~l~~l~-----hp~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~  130 (311)
T 3niz_A           63 P------STAIREISLLKELH-----HPNIVSLIDVIHSERCLTLVFEFMEK-DLKKVLDENKTGLQDSQIKIYLYQLLR  130 (311)
T ss_dssp             H------HHHHHHHHHHHHCC-----CTTBCCEEEEECCSSCEEEEEECCSE-EHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred             h------HHHHHHHHHHHHcC-----CCCEeeeeeEEccCCEEEEEEcCCCC-CHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence            1      12334555554442     23332222222334557999999997 5555433333345555544433  234


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCC
Q 004254          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGD  524 (765)
Q Consensus       446 ~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D  524 (765)
                      .+..+|..|++|+|+||+||+++.  ++.++|+|||++..++......      ....++..++++++..- ...+...|
T Consensus       131 ~l~~LH~~~ivH~Dikp~NIl~~~--~~~~kl~Dfg~a~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~~D  202 (311)
T 3niz_A          131 GVAHCHQHRILHRDLKPQNLLINS--DGALKLADFGLARAFGIPVRSY------THEVVTLWYRAPDVLMGSKKYSTSVD  202 (311)
T ss_dssp             HHHHHHHTTEECCCCCGGGEEECT--TCCEEECCCTTCEETTSCCC---------CCCCCCTTCCHHHHTTCCSCCTHHH
T ss_pred             HHHHHHHCCcccCCCchHhEEECC--CCCEEEccCcCceecCCCcccc------cCCcccCCcCCHHHhcCCCCCCchHH
Confidence            578899999999999999999986  8899999999998775432211      11234666777887653 34566779


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++...+.+++
T Consensus       203 iwslG~il~~ll  214 (311)
T 3niz_A          203 IWSIGCIFAEMI  214 (311)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            999987766654

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.57  E-value=5.4e-15  Score=160.49  Aligned_cols=186  Identities=17%  Similarity=0.116  Sum_probs=122.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+.....                ..         ..        ..      .
T Consensus        23 ~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~----------------~~---------~~--------~~------~   63 (345)
T 1xjd_A           23 KMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVL----------------MD---------DD--------VE------C   63 (345)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHH----------------HT---------TC--------HH------H
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhh----------------hh---------hh--------HH------H
Confidence            6899999999999999  5999999988432100                00         00        00      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +..|.+.+...    .++++|.-..-+.+.....+|||||++|++|.+.... ...++...+...+  +-..+..+|..|
T Consensus        64 ~~~E~~il~~~----~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~  138 (345)
T 1xjd_A           64 TMVEKRVLSLA----WEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQS-CHKFDLSRATFYAAEIILGLQFLHSKG  138 (345)
T ss_dssp             HHHHHHHHHHH----TTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhc----CCCCCCCcEEEEEEeCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            22333333322    1234332222222334567999999999999886532 2234444433333  334578899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||+||+++.  +|.++|+|||++.........      .....+++.++++++...+..+...|++++...+.+
T Consensus       139 ivHrDlkp~NIll~~--~g~vkL~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e  210 (345)
T 1xjd_A          139 IVYRDLKLDNILLDK--DGHIKIADFGMCKENMLGDAK------TNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYE  210 (345)
T ss_dssp             CBCCCCCGGGEEECT--TSCEEECCCTTCBCCCCTTCC------BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHH
T ss_pred             eEeCCCChhhEEECC--CCCEEEeEChhhhhcccCCCc------ccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHH
Confidence            999999999999985  899999999999865322110      011346788899998877667777899999877766


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       211 ll  212 (345)
T 1xjd_A          211 ML  212 (345)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.57  E-value=5.5e-15  Score=155.04  Aligned_cols=187  Identities=14%  Similarity=0.089  Sum_probs=125.3

Q ss_pred             ccccccceeEEEEEEe-------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||+|++|.||+|+.       +|+.||||+.++.....                                        
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------------   68 (313)
T 1t46_A           29 KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLT----------------------------------------   68 (313)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHH----------------------------------------
T ss_pred             HhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHH----------------------------------------
Confidence            6899999999999985       36899999986543211                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc-----------------CCC
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-----------------GVD  434 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~-----------------g~d  434 (765)
                       ..-.+.+|++.+.++.    ++++|.-..-+.......++||||++|++|.++......                 .++
T Consensus        69 -~~~~~~~E~~~l~~l~----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  143 (313)
T 1t46_A           69 -EREALMSELKVLSYLG----NHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALD  143 (313)
T ss_dssp             -HHHHHHHHHHHHHHHC----CCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCC
T ss_pred             -HHHHHHHHHHHHhhcc----cCCCeeeEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCC
Confidence             0113455666555552    234333222233445677999999999999987543221                 244


Q ss_pred             HHHHHHHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004254          435 RKRLGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  512 (765)
Q Consensus       435 ~~~ia~~li--~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~  512 (765)
                      ...+...+.  -..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+........    .....+...+++++
T Consensus       144 ~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE  217 (313)
T 1t46_A          144 LEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTH--GRITKICDFGLARDIKNDSNYVV----KGNARLPVKWMAPE  217 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEET--TTEEEECCCGGGSCTTSCTTSEE----CSSSEECGGGCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEcC--CCCEEEcccccccccccccccee----ccCCCCcceeeChH
Confidence            444444433  33478899999999999999999986  88999999999987765421100    01112334577787


Q ss_pred             HHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          513 MVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       513 l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ....+..++..|++++...+.+++
T Consensus       218 ~~~~~~~~~~~Di~slG~il~ell  241 (313)
T 1t46_A          218 SIFNCVYTFESDVWSYGIFLWELF  241 (313)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCChHHHHHHHHHHHHHHH
Confidence            777777777789999887766554

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.57  E-value=6.3e-15  Score=153.10  Aligned_cols=187  Identities=17%  Similarity=0.129  Sum_probs=124.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+........                                            +
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--------------------------------------------~   50 (296)
T 4hgt_A           15 RKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHP--------------------------------------------Q   50 (296)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEEC---CC--------------------------------------------C
T ss_pred             eeecCCCCeEEEEEEEcCCCceEEEEeecccccch--------------------------------------------H
Confidence            6899999999999997  69999999853321100                                            1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|...+..+.    +.+.+.....+.......++||||+ |++|.++.......++...+...+.+  ..+..+|..|
T Consensus        51 ~~~e~~~l~~l~----~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~  125 (296)
T 4hgt_A           51 LHIESKIYKMMQ----GGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKN  125 (296)
T ss_dssp             HHHHHHHHHHHT----TSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc----CCCCCCeeeeecCCCCceEEEEEcc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            333444444443    3333444444445556679999999 88999876543445665555544433  4488899999


Q ss_pred             ccccCCCCCcEEE---eecCCCcEEEEeecceeccChhhHHHHHH-HHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          455 FFHADPHPGNIAV---DDVNGGRLIFYDFGMMGSISPNIREGLLE-AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       455 ffHaDpHPGNILV---~~~~~g~l~LiDFGlv~~L~~~~r~~l~~-l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      ++|+|+||.||++   +.  ++.++|+|||++..+.......... .......++..+++++....+..++..|++++..
T Consensus       126 ivH~Dlkp~NIl~~~~~~--~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~  203 (296)
T 4hgt_A          126 FIHRDVKPDNFLMGLGKK--GNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGY  203 (296)
T ss_dssp             EECSCCSGGGEEECCGGG--TTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHH
T ss_pred             eecCCCCHHHeeeeccCC--CCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHH
Confidence            9999999999999   44  7889999999998775432100000 0000124567788888887666667779999987


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       204 il~~l~  209 (296)
T 4hgt_A          204 VLMYFN  209 (296)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            766554

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.57  E-value=2.3e-15  Score=167.60  Aligned_cols=187  Identities=17%  Similarity=0.171  Sum_probs=123.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|+.  +|+.||||+.+...       +         ...-                       ..-.
T Consensus        67 ~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~-------~---------~~~~-----------------------~~~~  107 (412)
T 2vd5_A           67 KVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWD-------M---------LKRG-----------------------EVSC  107 (412)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHH-------H---------HHHG-----------------------GGCC
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEeHHH-------h---------hhHH-----------------------HHHH
Confidence            6899999999999999  59999999984310       0         0000                       0001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +..|...+..+     ++++|.-..-+.......+|||||++|++|.++.......++...+...+  +-..+..+|..|
T Consensus       108 ~~~E~~il~~~-----~hp~Iv~l~~~~~~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~g  182 (412)
T 2vd5_A          108 FREERDVLVNG-----DRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLG  182 (412)
T ss_dssp             HHHHHHHHHHS-----CTTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhc-----CCCCeeeEEEEEeeCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            23344333332     22333222222233456799999999999998764332345544433333  334578899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-------CCCCCCCCHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-------GVLVPTGDTTA  527 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-------G~~~~~~D~~~  527 (765)
                      ++|+|+||+||+++.  +|.++|+|||++..+.......     .....+++.+++++++..       +..+...|+++
T Consensus       183 iiHrDLKp~NILld~--~g~vkL~DFGla~~~~~~~~~~-----~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwS  255 (412)
T 2vd5_A          183 YVHRDIKPDNILLDR--CGHIRLADFGSCLKLRADGTVR-----SLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWA  255 (412)
T ss_dssp             EECCCCSGGGEEECT--TSCEEECCCTTCEECCTTSCEE-----CSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHH
T ss_pred             eeecccCHHHeeecC--CCCEEEeechhheeccCCCccc-----cceeccccCcCCHHHHhhcccCcCCCCCChHHhhhH
Confidence            999999999999985  8999999999998876532100     011246888899998872       44567789999


Q ss_pred             HHHHHHHHH
Q 004254          528 VRRTAQFFL  536 (765)
Q Consensus       528 l~~~~~~~l  536 (765)
                      +...+.+++
T Consensus       256 lGvilyell  264 (412)
T 2vd5_A          256 LGVFAYEMF  264 (412)
T ss_dssp             HHHHHHHHH
T ss_pred             HhHHHHHHH
Confidence            988776665

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.57  E-value=6.7e-15  Score=153.81  Aligned_cols=189  Identities=13%  Similarity=0.078  Sum_probs=123.3

Q ss_pred             ccccccceeEEEEEEe-C----CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-K----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~----G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||.|++|.||+|++ +    +..||||+.+......                                         .
T Consensus        31 ~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~-----------------------------------------~   69 (298)
T 3f66_A           31 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG-----------------------------------------E   69 (298)
T ss_dssp             EEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHH-----------------------------------------H
T ss_pred             ceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHH-----------------------------------------H
Confidence            6899999999999997 2    2368999874421110                                         0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  451 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~  451 (765)
                      .-.+.+|+..+.++    .+..-+.+-.++.+.....+++|||++|++|.++........+...+...+  +-..+..+|
T Consensus        70 ~~~~~~E~~~l~~l----~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH  145 (298)
T 3f66_A           70 VSQFLTEGIIMKDF----SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLA  145 (298)
T ss_dssp             HHHHHHHHHHHHTC----CCTTBCCCCEEECCSSSCCEEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC----CCCCEeeeeeEEEcCCCceEEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence            11244555544433    222223333333344456799999999999999765444445555554433  334588899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..|++|+|+||+||+++.  ++.++|+|||++..+..........  ......++.+++++....+..++..|++++...
T Consensus       146 ~~~i~H~dikp~Nil~~~--~~~~kl~Dfg~a~~~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  221 (298)
T 3f66_A          146 SKKFVHRDLAARNCMLDE--KFTVKVADFGLARDMYDKEYYSVHN--KTGAKLPVKWMALESLQTQKFTTKSDVWSFGVL  221 (298)
T ss_dssp             HTTCCCSCCSGGGEEECT--TCCEEECSCGGGCCCSCGGGCBC-------CCBCGGGSCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             hCCccCCCCchheEEECC--CCCEEECcccccccccccchhcccc--ccCCCCCccccChHHhcCCCCChHHHHHHHHHH
Confidence            999999999999999985  8899999999998776543211110  111234456777887777666777899998877


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       222 l~~l~  226 (298)
T 3f66_A          222 LWELM  226 (298)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.57  E-value=6e-15  Score=157.80  Aligned_cols=187  Identities=17%  Similarity=0.128  Sum_probs=126.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+.......                      ....+.              -+
T Consensus        17 ~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~----------------------~~~~~~--------------~~   60 (326)
T 2y0a_A           17 EELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSS----------------------RRGVSR--------------ED   60 (326)
T ss_dssp             EEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTC----------------------SSSBCH--------------HH
T ss_pred             eEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccc----------------------cchhhH--------------HH
Confidence            6899999999999999  599999998854322110                      000000              12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +.+|+..+.++.     +++|.-..-+.......++||||++|++|.++... ...++...+...+.  -..+..+|..|
T Consensus        61 ~~~E~~~l~~l~-----hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~al~~lH~~~  134 (326)
T 2y0a_A           61 IEREVSILKEIQ-----HPNVITLHEVYENKTDVILILELVAGGELFDFLAE-KESLTEEEATEFLKQILNGVYYLHSLQ  134 (326)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHTT-SSCCBHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC-----CCCCCcEEEEEEeCCEEEEEEEcCCCCCHHHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHHCC
Confidence            345555554442     34333222233445667999999999999987532 22345444444333  23478899999


Q ss_pred             ccccCCCCCcEEEeecCCC----cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGG----RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g----~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      ++|+|+||.||+++.  ++    .++|+|||++..++.....       .-..+++.++++++...+..++..|++++..
T Consensus       135 ivH~Dlkp~NIll~~--~~~~~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~  205 (326)
T 2y0a_A          135 IAHFDLKPENIMLLD--RNVPKPRIKIIDFGLAHKIDFGNEF-------KNIFGTPEFVAPEIVNYEPLGLEADMWSIGV  205 (326)
T ss_dssp             EECCCCCGGGEEESC--SSSSSCCEEECCCTTCEECCTTSCC-------CCCCSCTTTCCHHHHTTCCCCTHHHHHHHHH
T ss_pred             eEcCCCCHHHEEEec--CCCCCCCEEEEECCCCeECCCCCcc-------ccccCCcCcCCceeecCCCCCcHHHHHHHHH
Confidence            999999999999985  44    7999999999887643210       1124677888899887777777889999987


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       206 il~~ll  211 (326)
T 2y0a_A          206 ITYILL  211 (326)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766554

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.57  E-value=8.6e-15  Score=155.15  Aligned_cols=185  Identities=16%  Similarity=0.084  Sum_probs=121.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+......                           ..              -.
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------------~~--------------~~   53 (319)
T 4euu_A           15 DILGQGATANVFRGRHKKTGDLFAIKVFNNISFLR---------------------------PV--------------DV   53 (319)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGS---------------------------CH--------------HH
T ss_pred             EEecCCCCeEEEEEEECCCCcEEEEEEeccccccc---------------------------hH--------------HH
Confidence            6799999999999999  49999999985321110                           00              01


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccC-CCeEEEEeecCCCChhhhhhhhhc--CCCHHHHHHHHHH--HHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYT-TPQILTMEYVPGIKINRIQSLDEL--GVDRKRLGRYAVE--SYLEQI  450 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~s-t~~vLVMEyieG~~L~d~~~l~~~--g~d~~~ia~~li~--~~L~qi  450 (765)
                      +.+|++.+.++.     +++| .+-.++.+.. ...+|||||++|++|.++......  +++...+...+.+  ..+..+
T Consensus        54 ~~~E~~~l~~l~-----h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~L  128 (319)
T 4euu_A           54 QMREFEVLKKLN-----HKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHL  128 (319)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEEECTTTCCEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-----CCCcceEEEEeecCCCceEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHH
Confidence            234555444442     2322 2222222222 256999999999999987643322  2555555444333  347889


Q ss_pred             HhCCccccCCCCCcEEEeec--CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH--------cCCCC
Q 004254          451 LSHGFFHADPHPGNIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ--------MGVLV  520 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~--~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~--------lG~~~  520 (765)
                      |..|++|+|+||.||++...  .++.++|+|||++..++......       ...++..++++++..        .+..+
T Consensus       129 H~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~~~-------~~~gt~~y~aPE~~~~~~~~~~~~~~~~  201 (319)
T 4euu_A          129 RENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFV-------SLYGTEEYLHPDMYERAVLRKDHQKKYG  201 (319)
T ss_dssp             HHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCCBC-------CCCSCGGGCCHHHHHHHTSCCCCCCCBC
T ss_pred             HHCCEecCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCcee-------ecccCCCccCHHHhhhccccccccCCCC
Confidence            99999999999999998321  24579999999998876543210       123567777888776        35566


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004254          521 PTGDTTAVRRTAQFFL  536 (765)
Q Consensus       521 ~~~D~~~l~~~~~~~l  536 (765)
                      +..|++++...+.+++
T Consensus       202 ~~~DiwslG~il~el~  217 (319)
T 4euu_A          202 ATVDLWSIGVTFYHAA  217 (319)
T ss_dssp             TTHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHH
Confidence            7789999988776654

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.57  E-value=1.5e-15  Score=158.35  Aligned_cols=185  Identities=15%  Similarity=0.176  Sum_probs=122.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                            +
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--------------------------------------------~   51 (298)
T 1csn_A           16 RRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAP--------------------------------------------Q   51 (298)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSC--------------------------------------------C
T ss_pred             EEEeecCCEEEEEEEECCCCcEEEEEEeccCCccH--------------------------------------------H
Confidence            6899999999999997  69999999874321100                                            1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceee--eccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIF--WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy--~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~  452 (765)
                      +.+|.+.+.++.    ++++  +|.++  .......++||||+ |++|.++.......++...+...+.+  ..+..+|.
T Consensus        52 ~~~e~~~~~~l~----~~~~--i~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~  124 (298)
T 1csn_A           52 LRDEYRTYKLLA----GCTG--IPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHE  124 (298)
T ss_dssp             HHHHHHHHHHTT----TCTT--CCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh----cCCC--CCeEEeecCCCceeEEEEEec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHh
Confidence            334444444432    2222  33333  33455679999999 99999976543334565555444433  34788999


Q ss_pred             CCccccCCCCCcEEEeecCCC-----cEEEEeecceeccChhhHHHHHH-HHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGG-----RLIFYDFGMMGSISPNIREGLLE-AFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g-----~l~LiDFGlv~~L~~~~r~~l~~-l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~  526 (765)
                      .|++|+|+||.||+++.  ++     .++|+|||++..+.......... .......++..+++++....+..++..|++
T Consensus       125 ~~ivH~Dlkp~NIl~~~--~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~  202 (298)
T 1csn_A          125 KSLVYRDIKPDNFLIGR--PNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLE  202 (298)
T ss_dssp             TTEECCCCCGGGEEECC--SSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHH
T ss_pred             CCEecCCCCHHHEEecc--CCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHH
Confidence            99999999999999975  44     39999999998775432100000 000112356778888887766667778999


Q ss_pred             HHHHHHHHHH
Q 004254          527 AVRRTAQFFL  536 (765)
Q Consensus       527 ~l~~~~~~~l  536 (765)
                      ++...+.+++
T Consensus       203 slG~il~el~  212 (298)
T 1csn_A          203 ALGHVFMYFL  212 (298)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9887776654

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.57  E-value=2.2e-15  Score=167.61  Aligned_cols=186  Identities=20%  Similarity=0.199  Sum_probs=123.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+...                ....-.                       .-.
T Consensus        75 ~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~----------------~~~~~~-----------------------~~~  115 (410)
T 3v8s_A           75 KVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFE----------------MIKRSD-----------------------SAF  115 (410)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHH----------------HHHTCC-----------------------CST
T ss_pred             EEEEcCCCEEEEEEEECCCCcEEEEEEEehhh----------------hhhhHH-----------------------HHH
Confidence            6899999999999999  58999999874310                000000                       001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +..|...+..+     ++++|.-..-+.......+|||||++|++|.++..  ...++.......+  +-..+..+|..|
T Consensus       116 ~~~E~~il~~l-----~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~--~~~~~e~~~~~~~~qi~~aL~~LH~~g  188 (410)
T 3v8s_A          116 FWEERDIMAFA-----NSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMS--NYDVPEKWARFYTAEVVLALDAIHSMG  188 (410)
T ss_dssp             HHHHHHHHHHC-----CCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC-----CCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            23344433332     23433222222233456799999999999998653  3345544333322  334588899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC----CCCCCCHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV----LVPTGDTTAVRR  530 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~----~~~~~D~~~l~~  530 (765)
                      ++|+|+||+||+++.  +|.++|+|||++..+.......     .....+++.+++++++....    .+...|++++..
T Consensus       189 ivHrDLKp~NILl~~--~g~ikL~DFG~a~~~~~~~~~~-----~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGv  261 (410)
T 3v8s_A          189 FIHRDVKPDNMLLDK--SGHLKLADFGTCMKMNKEGMVR-----CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGV  261 (410)
T ss_dssp             EECCCCSGGGEEECT--TSCEEECCCTTCEECCTTSEEE-----CCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHH
T ss_pred             eEeccCCHHHeeECC--CCCEEEeccceeEeeccCCccc-----ccCCcCCccccCHHHhhccCCCcCCCCcceEecchH
Confidence            999999999999985  8999999999998876532100     01124788899999887543    456789999988


Q ss_pred             HHHHHHH
Q 004254          531 TAQFFLN  537 (765)
Q Consensus       531 ~~~~~l~  537 (765)
                      .+.+++.
T Consensus       262 ilyell~  268 (410)
T 3v8s_A          262 FLYEMLV  268 (410)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7766653

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.57  E-value=8.6e-15  Score=169.69  Aligned_cols=186  Identities=16%  Similarity=0.112  Sum_probs=127.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+.....                ..                       ..+-.
T Consensus       190 ~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~----------------~~-----------------------~~~~~  230 (576)
T 2acx_A          190 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIK----------------KR-----------------------KGEAM  230 (576)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHH----------------HT-----------------------TCHHH
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhh----------------hh-----------------------HHHHH
Confidence            6899999999999999  6999999988321000                00                       00123


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      +.+|.+.+..+     ++++|.-..-+.+.....+|||||++|++|.+..... ..+++...+...+  +-..+..+|..
T Consensus       231 ~~~E~~iL~~l-----~hp~Iv~l~~~~~~~~~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~  305 (576)
T 2acx_A          231 ALNEKQILEKV-----NSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE  305 (576)
T ss_dssp             HHHHHHHHHHC-----CCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHc-----CCCCEeeEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            44555555544     2233322222233345679999999999998865322 2235555444433  33457889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||+||+++.  +|.++|+|||++..+......       .-..+++.+++++++..+..+...|++++...+.
T Consensus       306 gIvHrDLKPeNILld~--~g~vKL~DFGla~~~~~~~~~-------~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvily  376 (576)
T 2acx_A          306 RIVYRDLKPENILLDD--HGHIRISDLGLAVHVPEGQTI-------KGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLY  376 (576)
T ss_dssp             TEECCCCCGGGEEECT--TSCEEECCCTTCEECCTTCCE-------ECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHH
T ss_pred             CEeccCCchheEEEeC--CCCeEEEecccceecccCccc-------cccCCCccccCHHHHcCCCCCccchHHHHHHHHH
Confidence            9999999999999985  899999999999987653210       1124688899999987766777889999988776


Q ss_pred             HHHH
Q 004254          534 FFLN  537 (765)
Q Consensus       534 ~~l~  537 (765)
                      +++.
T Consensus       377 eLlt  380 (576)
T 2acx_A          377 EMIA  380 (576)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6653

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.56  E-value=1.6e-14  Score=156.42  Aligned_cols=181  Identities=19%  Similarity=0.155  Sum_probs=122.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|+||+|+.  +|+.||||+........                                 .+..      -+
T Consensus        60 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~---------------------------------~~~~------~~  100 (348)
T 1u5q_A           60 REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS---------------------------------NEKW------QD  100 (348)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCH---------------------------------HHHH------HH
T ss_pred             eEEccCCCEEEEEEEEccCCeEEEEEEEccccccc---------------------------------hHHH------HH
Confidence            5799999999999997  69999999885432111                                 0001      13


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +.+|++.+.++.     +++|.-..-+.......+|||||++| .+.+........++...+...+.  ...+..+|..|
T Consensus       101 ~~~E~~~l~~l~-----hpniv~~~~~~~~~~~~~lv~e~~~g-~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~  174 (348)
T 1u5q_A          101 IIKEVRFLQKLR-----HPNTIQYRGCYLREHTAWLVMEYCLG-SASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHN  174 (348)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEEEETTEEEEEEECCSE-EHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC-----CCCEeeEEEEEEECCeEEEEEecCCC-CHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            445555554442     23332222222335667999999997 45554433334455555444433  33588899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCCHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRRT  531 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~---lG~~~~~~D~~~l~~~  531 (765)
                      ++|+|+||+||+++.  ++.++|+|||++..+++...          ..+++.++++++..   -+..++..|++++...
T Consensus       175 ivH~Dlkp~NIll~~--~~~~kL~DfG~a~~~~~~~~----------~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~i  242 (348)
T 1u5q_A          175 MIHRDVKAGNILLSE--PGLVKLGDFGSASIMAPANS----------FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT  242 (348)
T ss_dssp             CBCCCCSGGGEEEET--TTEEEECCCTTCBSSSSBCC----------CCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHH
T ss_pred             eeeCCCCHHHEEECC--CCCEEEeeccCceecCCCCc----------ccCCcceeCHhhhccccCCCCCcHHHHHHHHHH
Confidence            999999999999985  89999999999987765321          24677888888874   3556677899999877


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       243 l~ell  247 (348)
T 1u5q_A          243 CIELA  247 (348)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.56  E-value=9.2e-15  Score=157.32  Aligned_cols=185  Identities=16%  Similarity=0.102  Sum_probs=123.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+..-.                                     ...      +
T Consensus        41 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-------------------------------------~~~------~   77 (360)
T 3llt_A           41 RKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKK-------------------------------------YTR------S   77 (360)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECSCHH-------------------------------------HHH------H
T ss_pred             EEEcccCCeEEEEEEECCCCeEEEEEEeccchh-------------------------------------hhh------h
Confidence            6899999999999999  699999999843110                                     001      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      +..|+..+..+...-..+++|.-..-+.......+|||||+ |++|.++..... .+++...+...+.  -..+..+|..
T Consensus        78 ~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~  156 (360)
T 3llt_A           78 AKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKM  156 (360)
T ss_dssp             HHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHhcccCCCCCCeecccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            23344444444321111222222222223456679999999 888988654322 2355555444333  3448889999


Q ss_pred             CccccCCCCCcEEEee-----------------------cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHH
Q 004254          454 GFFHADPHPGNIAVDD-----------------------VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVL  510 (765)
Q Consensus       454 GffHaDpHPGNILV~~-----------------------~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~  510 (765)
                      |++|+|+||+||+++.                       ..++.++|+|||++...+....         -..+++.+++
T Consensus       157 ~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~---------~~~gt~~y~a  227 (360)
T 3llt_A          157 SLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHG---------SIINTRQYRA  227 (360)
T ss_dssp             TEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCCC---------SCCSCGGGCC
T ss_pred             CeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCCc---------CccCcccccC
Confidence            9999999999999963                       1367899999999987654321         1245778888


Q ss_pred             HHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          511 QAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       511 ~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +++..-+..++..|++++...+.+++
T Consensus       228 PE~~~~~~~~~~~DiwslG~il~ell  253 (360)
T 3llt_A          228 PEVILNLGWDVSSDMWSFGCVLAELY  253 (360)
T ss_dssp             HHHHTTCCCCTTHHHHHHHHHHHHHH
T ss_pred             cHHHcCCCCCCccchHHHHHHHHHHH
Confidence            99888777788889999987766554

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.56  E-value=1.2e-15  Score=163.29  Aligned_cols=185  Identities=18%  Similarity=0.176  Sum_probs=120.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+........                                   .      +-.
T Consensus        13 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~------~~~   51 (323)
T 3tki_A           13 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-----------------------------------C------PEN   51 (323)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECC------------------------------------------------C
T ss_pred             eEEecCCCEEEEEEEECCCCcEEEEEEEEcccccc-----------------------------------h------HHH
Confidence            7899999999999998  69999999874321100                                   0      012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +.+|+..+..+    . +++|.-..-+....+..+|||||++|++|.+.... ...++...+...+.  -..+..+|..|
T Consensus        52 ~~~E~~~l~~l----~-hpnIv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~aL~~LH~~g  125 (323)
T 3tki_A           52 IKKEICINKML----N-HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEP-DIGMPEPDAQRFFHQLMAGVVYLHGIG  125 (323)
T ss_dssp             HHHHHHHHHHC----C-CTTBCCEEEEEECSSEEEEEEECCTTEEGGGGSBT-TTBCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CCCCCeEEEEEecCCeEEEEEEcCCCCcHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33444444443    2 23332222233345567999999999999886532 22345444443332  33478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~-~~~~D~~~l~~~~~  533 (765)
                      ++|+|+||+||+++.  ++.++|+|||++..+........    .....+++.++++++...+.. +...|++++...+.
T Consensus       126 ivH~Dlkp~NIll~~--~~~~kl~Dfg~a~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~  199 (323)
T 3tki_A          126 ITHRDIKPENLLLDE--RDNLKISDFGLATVFRYNNRERL----LNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLT  199 (323)
T ss_dssp             EECSCCSGGGEEECT--TCCEEECCCTTCEECEETTEECC----BCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHH
T ss_pred             ccccccchHHEEEeC--CCCEEEEEeeccceeccCCcccc----cCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHH
Confidence            999999999999985  78999999999986643221110    011245677888888765443 44578888887766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       200 ~ll  202 (323)
T 3tki_A          200 AML  202 (323)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.56  E-value=1.3e-14  Score=153.89  Aligned_cols=177  Identities=16%  Similarity=0.175  Sum_probs=118.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.++...+.                                             
T Consensus        42 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------------------------------   76 (330)
T 3nsz_A           42 RKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKK---------------------------------------------   76 (330)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECSCCHHH---------------------------------------------
T ss_pred             EEecccCCeEEEEEEECCCCcEEEEEEecccchHH---------------------------------------------
Confidence            6899999999999998  69999999986543222                                             


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~  452 (765)
                      +.+|++.+.++.    ++++| .+-.++.+. ....++||||++|+.|.++..    .++...+...+  +-..+..+|.
T Consensus        77 ~~~E~~~l~~l~----~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~lH~  148 (330)
T 3nsz_A           77 IKREIKILENLR----GGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ----TLTDYDIRFYMYEILKALDYCHS  148 (330)
T ss_dssp             HHHHHHHHHHHT----TSTTBCCEEEEEECTTTCCEEEEEECCCCCCHHHHGG----GCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC----CCCCEEEeeeeeccCCCCceEEEEeccCchhHHHHHH----hCCHHHHHHHHHHHHHHHHHHHh
Confidence            234444444443    22332 222222221 345699999999999988642    13444333333  2344788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRT  531 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~  531 (765)
                      .|++|+|+||+||+++. +++.++|+|||++..+.+....       ....++..++++++... +..+...|++++...
T Consensus       149 ~~ivH~Dikp~Nil~~~-~~~~~kl~Dfg~a~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~i  220 (330)
T 3nsz_A          149 MGIMHRDVKPHNVMIDH-EHRKLRLIDWGLAEFYHPGQEY-------NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM  220 (330)
T ss_dssp             TTEECCCCSGGGEEEET-TTTEEEECCCTTCEECCTTCCC-------CSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHH
T ss_pred             CCeeeCCCCHHHEEEcC-CCCEEEEEeCCCceEcCCCCcc-------ccccccccccChhhhcCCCcCCchhhHHHHHHH
Confidence            99999999999999985 2348999999999877654321       11234556677777654 456667899999877


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       221 l~~ll  225 (330)
T 3nsz_A          221 LASMI  225 (330)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.56  E-value=6.4e-15  Score=152.30  Aligned_cols=190  Identities=17%  Similarity=0.101  Sum_probs=123.6

Q ss_pred             hhhcccC-cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004254          291 DVFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (765)
Q Consensus       291 eiF~~fd-~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (765)
                      ++...|. .+.||+|++|+||+|+.  ++..||+|+..+...+.                            .       
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~----------------------------~-------   50 (277)
T 3f3z_A            6 DINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVED----------------------------V-------   50 (277)
T ss_dssp             CHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSC----------------------------H-------
T ss_pred             hhhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccch----------------------------H-------
Confidence            3444454 36899999999999999  57899999875432211                            0       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HH
Q 004254          368 ASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ES  445 (765)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~  445 (765)
                       +      .+.+|++.+.++     ++++|.-..-+.......++||||++|++|.+.... ...++...+...+.  -.
T Consensus        51 -~------~~~~E~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~-~~~~~~~~~~~i~~~i~~  117 (277)
T 3f3z_A           51 -D------RFKQEIEIMKSL-----DHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVH-KRVFRESDAARIMKDVLS  117 (277)
T ss_dssp             -H------HHHHHHHHHHTC-----CCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH-HCSCCHHHHHHHHHHHHH
T ss_pred             -H------HHHHHHHHHHhC-----CCCCEeeEEEEEecCCeEEEEEeccCCCcHHHHHHH-cCCCCHHHHHHHHHHHHH
Confidence             0      233455444443     223332222222344567999999999999886532 23345444443333  23


Q ss_pred             HHHHHHhCCccccCCCCCcEEEee-cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004254          446 YLEQILSHGFFHADPHPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (765)
Q Consensus       446 ~L~qi~~~GffHaDpHPGNILV~~-~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D  524 (765)
                      .+..+|..|++|+|+||+||++.. ..++.++|+|||++..+.+....       ....+++.++++++.. |..++..|
T Consensus       118 ~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~-------~~~~~t~~y~aPE~~~-~~~~~~~D  189 (277)
T 3f3z_A          118 AVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMM-------RTKVGTPYYVSPQVLE-GLYGPECD  189 (277)
T ss_dssp             HHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSCB-------CCCCSCTTTCCHHHHT-TCBCTTHH
T ss_pred             HHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccch-------hccCCCCCccChHHhc-ccCCchhh
Confidence            478899999999999999999932 13688999999999877653211       1123556677777764 45778889


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++...+.+++
T Consensus       190 i~slG~~l~~l~  201 (277)
T 3f3z_A          190 EWSAGVMMYVLL  201 (277)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             ehhHHHHHHHHH
Confidence            999987766554

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.56  E-value=6.5e-15  Score=151.69  Aligned_cols=182  Identities=20%  Similarity=0.189  Sum_probs=119.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|+||+|+.  +|+.||||+.++......                                        .+.+
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~----------------------------------------~~~~   56 (289)
T 1x8b_A           17 EKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSV----------------------------------------DEQN   56 (289)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSH----------------------------------------HHHH
T ss_pred             hhhcCCCceEEEEEEEcCCCceEEEEEecccccccH----------------------------------------HHHH
Confidence            6899999999999999  699999999865432210                                        1123


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---cCCCHHHHHHHHHH--HHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYAVE--SYLEQIL  451 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---~g~d~~~ia~~li~--~~L~qi~  451 (765)
                      +.+|...+..+    ..+++|.-..-+.......++||||++|++|.++.....   ..++...+...+.+  ..+..+|
T Consensus        57 ~~~e~~~~~~l----~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH  132 (289)
T 1x8b_A           57 ALREVYAHAVL----GQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH  132 (289)
T ss_dssp             HHHHHHHHHHS----CSCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh----CCCCCeeeeeeeeecCCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            34444444332    133443322223344567799999999999998754321   23455444443332  3478899


Q ss_pred             hCCccccCCCCCcEEEeec-----------------CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDV-----------------NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV  514 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~-----------------~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~  514 (765)
                      ..|++|+|+||.||+++..                 ....++++|||++..++....          ..++..+++++..
T Consensus       133 ~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~----------~~gt~~y~aPE~~  202 (289)
T 1x8b_A          133 SMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQV----------EEGDSRFLANEVL  202 (289)
T ss_dssp             HTTEECSCCSGGGEEEC--------------------CCCEEECCCTTCEETTCSCC----------CCCCGGGCCHHHH
T ss_pred             hCCEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCccc----------cCCCccccChhHh
Confidence            9999999999999999741                 134799999999988765421          1366777888887


Q ss_pred             HcC-CCCCCCCHHHHHHHHHH
Q 004254          515 QMG-VLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       515 ~lG-~~~~~~D~~~l~~~~~~  534 (765)
                      .-+ ..++..|++++...+.+
T Consensus       203 ~~~~~~~~~~Di~slG~il~~  223 (289)
T 1x8b_A          203 QENYTHLPKADIFALALTVVC  223 (289)
T ss_dssp             TTCCTTHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCchhhHHHHHHHHHH
Confidence            644 22345688888765543

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.56  E-value=5.8e-15  Score=160.34  Aligned_cols=187  Identities=12%  Similarity=0.106  Sum_probs=119.5

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||.|++|.||+|+.  +|+.||||+.++.....-                                 ...+      
T Consensus        67 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~---------------------------------~~~~------  107 (371)
T 3q60_A           67 VEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSR---------------------------------SELE------  107 (371)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHH---------------------------------HHHH------
T ss_pred             eeeccCCCCEEEEEEEECCCCceeEEEEEEecccccc---------------------------------cHHH------
Confidence            36899999999999998  699999999866432110                                 0011      


Q ss_pred             HHHHHHHHHHHHHHhcCCCC------ccccc-eeeecc----------------CCCeEEEEeecCCCChhhhhhhhhcC
Q 004254          376 DYTQEAANAELFASNFKDMD------YVKVP-TIFWEY----------------TTPQILTMEYVPGIKINRIQSLDELG  432 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~------~V~vP-~vy~e~----------------st~~vLVMEyieG~~L~d~~~l~~~g  432 (765)
                      .+..|+..+..+..  .+..      .+.+| .++..-                ....+|||||++ ++|.++.......
T Consensus       108 ~~~~E~~~~~~l~~--~hp~iv~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~  184 (371)
T 3q60_A          108 RLHEATFAAARLLG--ESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFV  184 (371)
T ss_dssp             HHHHHHHHHHHHHC------------CBCCCCEEEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcc--cChhhhhhceeEEeeehheecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccc
Confidence            23334444444432  1111      12222 111110                023699999999 6888865432222


Q ss_pred             C--CHH------HHHHHHHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhc
Q 004254          433 V--DRK------RLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEK  504 (765)
Q Consensus       433 ~--d~~------~ia~~li~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~  504 (765)
                      .  ...      ......+-..+..+|..|++|+|+||+|||++.  ++.++|+|||++...+.....         ...
T Consensus       185 ~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~ivHrDikp~NIll~~--~~~~kL~DFG~a~~~~~~~~~---------~~~  253 (371)
T 3q60_A          185 YVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMP--DGRLMLGDVSALWKVGTRGPA---------SSV  253 (371)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEECT--TSCEEECCGGGEEETTCEEEG---------GGS
T ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHHHCCCccCcCCHHHEEECC--CCCEEEEecceeeecCCCccC---------ccC
Confidence            2  222      122123444578899999999999999999985  889999999999987654321         223


Q ss_pred             CHHHHHHHHHHc--CCCCCCCCHHHHHHHHHHHHH
Q 004254          505 DADKVLQAMVQM--GVLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       505 D~~~i~~~l~~l--G~~~~~~D~~~l~~~~~~~l~  537 (765)
                      .+.++++++...  ...++..|++++...+.+++.
T Consensus       254 t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~ellt  288 (371)
T 3q60_A          254 PVTYAPREFLNASTATFTHALNAWQLGLSIYRVWC  288 (371)
T ss_dssp             CGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHH
T ss_pred             CcCCcChhhccCCCCCcCccccHHHHHHHHHHHHh
Confidence            477888888865  445667899999887766653

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.56  E-value=1.5e-14  Score=151.98  Aligned_cols=184  Identities=15%  Similarity=0.087  Sum_probs=118.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+........                                  +..+      .
T Consensus         9 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~------~   48 (311)
T 4agu_A            9 GKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDP----------------------------------VIKK------I   48 (311)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-H----------------------------------HHHH------H
T ss_pred             eEEeecCCeEEEEEEeCCCCcEEEEEEeeccccch----------------------------------HHHH------H
Confidence            6899999999999999  59999999874432111                                  0111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|++.+.++.     +++|.-..-+.......++||||++|..+.++... ..+.+...+...+  +-..+..+|..|
T Consensus        49 ~~~E~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~i~~~l~~~l~~lH~~~  122 (311)
T 4agu_A           49 ALREIRMLKQLK-----HPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRY-QRGVPEHLVKSITWQTLQAVNFCHKHN  122 (311)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHT-SSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC-----CCCccchhheeecCCeEEEEEEeCCCchHHHHHhh-hcCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            334555554442     23332222222335567999999999988886532 2334544443333  234578899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|+||+||+++.  ++.++|+|||++..++......      ....++..++++++... ...++..|++++...+.
T Consensus       123 ivH~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~  194 (311)
T 4agu_A          123 CIHRDVKPENILITK--HSVIKLCDFGFARLLTGPSDYY------DDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFA  194 (311)
T ss_dssp             EECCCCSGGGEEECT--TSCEEECCCTTCEECC------------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHH
T ss_pred             CcCCCCChhhEEEcC--CCCEEEeeCCCchhccCccccc------CCCcCCccccChHHHhcCCCCCcchhhHHHHHHHH
Confidence            999999999999985  8899999999998876433211      11124555677777654 44567789999987766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       195 ~l~  197 (311)
T 4agu_A          195 ELL  197 (311)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.56  E-value=4e-15  Score=158.94  Aligned_cols=187  Identities=14%  Similarity=0.079  Sum_probs=122.5

Q ss_pred             ccccccceeEEEEEEe-------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||.|++|.||+|+.       +++.||||+.++.....                                   .    
T Consensus        51 ~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~----   91 (344)
T 1rjb_A           51 KVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSS-----------------------------------E----   91 (344)
T ss_dssp             EEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC---------------------------------------------
T ss_pred             eeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHH-----------------------------------H----
Confidence            6899999999999996       35789999986432110                                   0    


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcC-------------------
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG-------------------  432 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g-------------------  432 (765)
                        .-.+.+|++.+.++.    .+++|.-..-+.......++||||++|++|.++.......                   
T Consensus        92 --~~~~~~E~~~l~~l~----~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  165 (344)
T 1rjb_A           92 --REALMSELKMMTQLG----SHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEED  165 (344)
T ss_dssp             --CHHHHHHHHHHHHHC----CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC------------------
T ss_pred             --HHHHHHHHHHHHhhc----CCCCeeeEEEEEeeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccc
Confidence              013445555555542    2344333323334456789999999999999876432211                   


Q ss_pred             ---CCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHH
Q 004254          433 ---VDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDAD  507 (765)
Q Consensus       433 ---~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~  507 (765)
                         ++...+...+  +...+..+|..|++|+|+||.||+++.  ++.++|+|||++..+.......    ......+++.
T Consensus       166 ~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~~----~~~~~~~t~~  239 (344)
T 1rjb_A          166 LNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTH--GKVVKICDFGLARDIMSDSNYV----VRGNARLPVK  239 (344)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEEET--TTEEEECCCGGGSCGGGCTTSE----EETTEEECGG
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEEcC--CCcEEeCCCccCcccccCccce----eccCccCccC
Confidence               3333333333  223478899999999999999999985  8899999999998765432110    0011223456


Q ss_pred             HHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          508 KVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       508 ~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +++++....+..++..|++++...+.+++
T Consensus       240 y~aPE~~~~~~~~~~~Di~slG~il~el~  268 (344)
T 1rjb_A          240 WMAPESLFEGIYTIKSDVWSYGILLWEIF  268 (344)
T ss_dssp             GCCHHHHHHCCCCHHHHHHHHHHHHHHHT
T ss_pred             ccCHHHhccCCCChhHhHHHHHHHHHHHH
Confidence            77888877777777789999887665543

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.56  E-value=2.4e-15  Score=167.96  Aligned_cols=185  Identities=13%  Similarity=0.112  Sum_probs=120.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.++.....                                 .+      ..-.
T Consensus       154 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~------~~~~  194 (446)
T 4ejn_A          154 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVA---------------------------------KD------EVAH  194 (446)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC----------------------------------------------
T ss_pred             EEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhh---------------------------------hH------HHHH
Confidence            7899999999999998  69999999985321100                                 00      0001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh-C
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS-H  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~-~  453 (765)
                      +.+|++.+..    +. +++|.-..-+.......+|||||++|++|.+.... ...++...+...+  +...+..+|. .
T Consensus       195 ~~~e~~~l~~----l~-h~~iv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~  268 (446)
T 4ejn_A          195 TLTENRVLQN----SR-HPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSR-ERVFSEDRARFYGAEIVSALDYLHSEK  268 (446)
T ss_dssp             ------CCCC----CS-CTTSCCEEEEEEETTEEEEEECCCSSCBHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHh----CC-CCeEeeEEEEEeeCCEEEEEEeeCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHhhcC
Confidence            2223322221    22 23332222222334567999999999999876532 2334544444333  2345888997 9


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||+|||++.  ++.++|+|||++.........      .....+++.++++++..-+..++..|++++...+.
T Consensus       269 giiHrDlkp~NIll~~--~~~~kl~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~  340 (446)
T 4ejn_A          269 NVVYRDLKLENLMLDK--DGHIKITDFGLCKEGIKDGAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMY  340 (446)
T ss_dssp             CCCCCCCCGGGEEECS--SSCEEECCCCCCCTTCC-----------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHH
T ss_pred             CEEECCCCHHHEEECC--CCCEEEccCCCceeccCCCcc------cccccCCccccCHhhcCCCCCCCccchhhhHHHHH
Confidence            9999999999999986  889999999999865433211      11235688899999988877788889999988776


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       341 ell  343 (446)
T 4ejn_A          341 EMM  343 (446)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.56  E-value=8.7e-15  Score=154.95  Aligned_cols=187  Identities=15%  Similarity=0.157  Sum_probs=110.1

Q ss_pred             ccccccceeEEEEEEe--CCe---EEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGE---EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~---~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||+|++|.||+|+.  +++   .||||+.++.....-                                        .
T Consensus        29 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~----------------------------------------~   68 (323)
T 3qup_A           29 RMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASS----------------------------------------D   68 (323)
T ss_dssp             EEEEEETTEEEEEEEC-------CEEEEEEC------CH----------------------------------------H
T ss_pred             ceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHH----------------------------------------H
Confidence            6899999999999998  233   899998855321110                                        0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCe------EEEEeecCCCChhhhhhhhhc-----CCCHHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQ------ILTMEYVPGIKINRIQSLDEL-----GVDRKRLGRYA  442 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~------vLVMEyieG~~L~d~~~l~~~-----g~d~~~ia~~l  442 (765)
                      .-++.+|++.+.++    .+..-+.+-.++. .....      +++|||++|++|.++......     .++...+...+
T Consensus        69 ~~~~~~E~~~l~~l----~h~~iv~~~~~~~-~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~  143 (323)
T 3qup_A           69 IEEFLREAACMKEF----DHPHVAKLVGVSL-RSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFM  143 (323)
T ss_dssp             HHHHHHHHHHHTTC----CCTTBCCCCEEEE-CC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC----CCCceehhhceee-ccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHH
Confidence            11344555544433    2222222222222 12222      899999999999987543221     24444444433


Q ss_pred             H--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004254          443 V--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (765)
Q Consensus       443 i--~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~  520 (765)
                      .  -..+..+|..|++|+|+||+||+++.  ++.++|+|||++..+........    .......+.+++++...-+..+
T Consensus       144 ~qi~~al~~LH~~~ivH~Dikp~NIli~~--~~~~kl~Dfg~a~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~  217 (323)
T 3qup_A          144 VDIACGMEYLSSRNFIHRDLAARNCMLAE--DMTVCVADFGLSRKIYSGDYYRQ----GCASKLPVKWLALESLADNLYT  217 (323)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCSGGGEEECT--TSCEEECCCCC---------------------CCGGGCCHHHHHHCCCC
T ss_pred             HHHHHHHHHHHcCCcccCCCCcceEEEcC--CCCEEEeeccccccccccccccc----cccccCcccccCchhhcCCCCC
Confidence            3  33578899999999999999999985  78999999999987755432111    1112234567778877777677


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004254          521 PTGDTTAVRRTAQFFL  536 (765)
Q Consensus       521 ~~~D~~~l~~~~~~~l  536 (765)
                      +..|++++...+.+++
T Consensus       218 ~~~Di~slG~il~ell  233 (323)
T 3qup_A          218 VHSDVWAFGVTMWEIM  233 (323)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CccchhhHHHHHHHHH
Confidence            7789999987766554

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.56  E-value=5.6e-15  Score=161.36  Aligned_cols=187  Identities=15%  Similarity=0.149  Sum_probs=125.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+......-                      .....        .+      +
T Consensus        18 ~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~----------------------~~~~~--------~~------~   61 (361)
T 2yab_A           18 EELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRAS----------------------RRGVC--------RE------E   61 (361)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTC----------------------SSSBC--------HH------H
T ss_pred             eEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccc----------------------cchhH--------HH------H
Confidence            6899999999999999  599999999865432110                      00000        01      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|...+..+    . +++|.-..-+.+.....++||||++|++|.++... ...++...+...+.+  ..+..+|..|
T Consensus        62 ~~~E~~il~~l----~-hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~-~~~l~~~~~~~i~~qi~~aL~~LH~~g  135 (361)
T 2yab_A           62 IEREVSILRQV----L-HPNIITLHDVYENRTDVVLILELVSGGELFDFLAQ-KESLSEEEATSFIKQILDGVNYLHTKK  135 (361)
T ss_dssp             HHHHHHHHTTC----C-CTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHTT-CSCCBHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CcCCCcEEEEEEeCCEEEEEEEcCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33444444333    2 33332222222345667999999999999987532 223454444443332  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCC----cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGG----RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g----~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      ++|+|+||+||++.+  ++    .++|+|||++..+.+....       .-..+++.++++++...+......|++++..
T Consensus       136 ivHrDlkp~NIll~~--~~~~~~~vkl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslGv  206 (361)
T 2yab_A          136 IAHFDLKPENIMLLD--KNIPIPHIKLIDFGLAHEIEDGVEF-------KNIFGTPEFVAPEIVNYEPLGLEADMWSIGV  206 (361)
T ss_dssp             EECCCCSGGGEEESC--TTSSSCCEEECCCSSCEECCTTCCC-------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHH
T ss_pred             cccCCCCHHHEEEeC--CCCCccCEEEEecCCceEcCCCCcc-------ccCCCCccEECchHHcCCCCCccccHHHHHH
Confidence            999999999999985  44    7999999999887653210       1124678899999988767777789999987


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       207 il~~ll  212 (361)
T 2yab_A          207 ITYILL  212 (361)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776655

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.56  E-value=5.5e-15  Score=161.87  Aligned_cols=189  Identities=14%  Similarity=0.097  Sum_probs=114.8

Q ss_pred             ccccccceeEEEEEEe---CC--eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL---KG--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l---~G--~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||+|++|.||+|++   ++  ..||||+.+......                                         .
T Consensus        95 ~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------------~  133 (373)
T 3c1x_A           95 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG-----------------------------------------E  133 (373)
T ss_dssp             EEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSH-----------------------------------------H
T ss_pred             cEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHH-----------------------------------------H
Confidence            5799999999999997   22  468999874422111                                         0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  451 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~  451 (765)
                      .-+|.+|+..+.++    .+..-+.+-.++.+..+..++||||++|++|.++........+...+...+  +...+..+|
T Consensus       134 ~~~~~~E~~il~~l----~hpnIv~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH  209 (373)
T 3c1x_A          134 VSQFLTEGIIMKDF----SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLA  209 (373)
T ss_dssp             HHHHHHHHTTSTTC----CCTTBCCCCEEECCCSSCCEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC----CCCCcceEEEEEEcCCCCeEEEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence            11344455433332    222222232333333456799999999999999765433445555544433  334588899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..|++|+|+||.||+++.  ++.++|+|||++..+..........  ..-....+.+++++....+..++..|++++...
T Consensus       210 ~~~ivHrDlkp~NIll~~--~~~~kL~DFG~a~~~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~i  285 (373)
T 3c1x_A          210 SKKFVHRDLAARNCMLDE--KFTVKVADFGLARDMYDKEFDSVHN--KTGAKLPVKWMALESLQTQKFTTKSDVWSFGVL  285 (373)
T ss_dssp             HTTCCCSCCCGGGEEECT--TCCEEECCC-----------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HCCEecCccchheEEECC--CCCEEEeeccccccccccccccccc--cCCCCCcccccChHHhcCCCCCcHHHHHHHHHH
Confidence            999999999999999985  8899999999998775433211111  111223456788888877777778899999877


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       286 l~ell  290 (373)
T 3c1x_A          286 LWELM  290 (373)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.56  E-value=9.8e-15  Score=158.98  Aligned_cols=185  Identities=12%  Similarity=0.075  Sum_probs=124.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+......                                 .+ .      -.
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~---------------------------------~~-~------~~   74 (362)
T 2bdw_A           35 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSA---------------------------------RD-F------QK   74 (362)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCH---------------------------------HH-H------HH
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCH---------------------------------HH-H------HH
Confidence            6899999999999998  59999999985432110                                 00 0      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +.+|++.+.++     ++++|.-..-+.+.....++||||++|++|.+.... ...++...+...+.  -..+.++|..|
T Consensus        75 ~~~E~~il~~l-----~hpnIv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~al~~lH~~~  148 (362)
T 2bdw_A           75 LEREARICRKL-----QHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVA-REFYSEADASHCIQQILESIAYCHSNG  148 (362)
T ss_dssp             HHHHHHHHHHC-----CCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTT-CSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC-----CCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34555555444     234332222223345667999999999999875432 22344444433332  23478899999


Q ss_pred             ccccCCCCCcEEEeecC-CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVN-GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~-~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|+||.||+++... ++.++|+|||++..+......       ....+++.++++++...+...+..|++++...+.
T Consensus       149 ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~  221 (362)
T 2bdw_A          149 IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAW-------HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILY  221 (362)
T ss_dssp             CBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCSC-------CCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHH
T ss_pred             eEeccCchHHEEEecCCCCCCEEEeecCcceEecCCccc-------ccCCCCccccCHHHHccCCCCchhhHHHHHHHHH
Confidence            99999999999997521 346999999999887643211       1134677888999887777777889999987776


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       222 ~ll  224 (362)
T 2bdw_A          222 ILL  224 (362)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.56  E-value=4.4e-15  Score=161.74  Aligned_cols=188  Identities=15%  Similarity=0.098  Sum_probs=121.5

Q ss_pred             ccccccceeEEEEEEe-------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||.|++|.||+|++       +|+.||||+.+......                                        
T Consensus        77 ~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------------  116 (367)
T 3l9p_A           77 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQ----------------------------------------  116 (367)
T ss_dssp             EECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHH----------------------------------------
T ss_pred             eEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChh----------------------------------------
Confidence            6799999999999995       36789999874432111                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh------cCCCHHHHHHHH--H
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE------LGVDRKRLGRYA--V  443 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~------~g~d~~~ia~~l--i  443 (765)
                       .+.++.+|+..+.++     ++++|.-..-+.......++||||++|++|.++.....      ..++...+...+  +
T Consensus       117 -~~~~~~~E~~~l~~l-----~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi  190 (367)
T 3l9p_A          117 -DELDFLMEALIISKF-----NHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDI  190 (367)
T ss_dssp             -HHHHHHHHHHHHHHC-----CCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHhC-----CCCCCCeEEEEEecCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHH
Confidence             122455666655554     22333222222233456799999999999998764322      124444443333  2


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004254          444 ESYLEQILSHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (765)
Q Consensus       444 ~~~L~qi~~~GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~  522 (765)
                      ...+..+|..|++|+|+||.||+++.. ++..++|+|||++..+.......    ......+++.++++++..-+..++.
T Consensus       191 ~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~  266 (367)
T 3l9p_A          191 ACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYR----KGGCAMLPVKWMPPEAFMEGIFTSK  266 (367)
T ss_dssp             HHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCT----TCCGGGSCGGGCCHHHHHHCCCCHH
T ss_pred             HHHHHHHHhCCeeCCCCChhhEEEecCCCCceEEECCCccccccccccccc----cCCCcCCcccEECHHHhcCCCCCcH
Confidence            345788999999999999999999841 12359999999987543211000    0011223556788888877777778


Q ss_pred             CCHHHHHHHHHHHH
Q 004254          523 GDTTAVRRTAQFFL  536 (765)
Q Consensus       523 ~D~~~l~~~~~~~l  536 (765)
                      .|++++...+.+++
T Consensus       267 ~DvwslG~il~ell  280 (367)
T 3l9p_A          267 TDTWSFGVLLWEIF  280 (367)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            89999987766554

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.56  E-value=1.1e-14  Score=163.70  Aligned_cols=187  Identities=12%  Similarity=0.065  Sum_probs=125.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||+|+........                                  .      ..-.
T Consensus        17 ~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~----------------------------------~------~~~~   56 (444)
T 3soa_A           17 EELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSA----------------------------------R------DHQK   56 (444)
T ss_dssp             EEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHH----------------------------------H------HHHH
T ss_pred             EEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCH----------------------------------H------HHHH
Confidence            6899999999999998  69999999885432110                                  0      0113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +.+|++.+..+    . +++|.-..-+.+.....++||||++|++|.+.... ...++...+...+.  -..+..+|..|
T Consensus        57 ~~~E~~il~~l----~-hpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~i~~-~~~~~e~~~~~i~~qil~aL~~lH~~g  130 (444)
T 3soa_A           57 LEREARICRLL----K-HPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVA-REYYSEADASHCIQQILEAVLHCHQMG  130 (444)
T ss_dssp             HHHHHHHHHHC----C-BTTBCCEEEEEECSSEEEEEECCCBCCBHHHHHHH-CSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CcCCCeEEEEEEECCEEEEEEEeCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            44555555544    2 33332222223445667999999999999875432 23345444443332  23478899999


Q ss_pred             ccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|+||+||+++.. +++.++|+|||++..+.......      .-..+++.++++++...+..++..|++++...+.
T Consensus       131 ivHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~------~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvily  204 (444)
T 3soa_A          131 VVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAW------FGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILY  204 (444)
T ss_dssp             CBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCBC------CCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHH
T ss_pred             ccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCcee------ecccCCcccCCHHHhcCCCCCCccccHHHHHHHH
Confidence            9999999999999842 35789999999998776542210      1124678899999988777778889999988776


Q ss_pred             HHHH
Q 004254          534 FFLN  537 (765)
Q Consensus       534 ~~l~  537 (765)
                      .++.
T Consensus       205 ell~  208 (444)
T 3soa_A          205 ILLV  208 (444)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6553

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.56  E-value=9.5e-15  Score=156.14  Aligned_cols=94  Identities=13%  Similarity=0.024  Sum_probs=65.3

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH-hCCccccCCCCCcEEEeecCCC----------
Q 004254          407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL-SHGFFHADPHPGNIAVDDVNGG----------  473 (765)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~-~~GffHaDpHPGNILV~~~~~g----------  473 (765)
                      ....+|||||++|+++-+..  ....++...+...+.+  ..+..+| ..|++|+|+||+|||++.  ++          
T Consensus       134 ~~~~~lv~E~~~~g~ll~~~--~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivHrDlKp~NILl~~--~~~~~~~~~~~~  209 (336)
T 2vuw_A          134 DDQLFIVLEFEFGGIDLEQM--RTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKK--TSLKKLHYTLNG  209 (336)
T ss_dssp             TTCEEEEEEEECCCEETGGG--TTTCCCHHHHHHHHHHHHHHHHHHHHHHCCBCSCCCGGGEEEEE--CSCSEEEEEETT
T ss_pred             cCeEEEEEEecCCCccHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHhCCEeECCCCHHHEEEec--cCCcceeeeccC
Confidence            45679999999998654432  1233444444433332  3478899 899999999999999996  54          


Q ss_pred             ----------cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH
Q 004254          474 ----------RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ  515 (765)
Q Consensus       474 ----------~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~  515 (765)
                                .++|+|||++..+....           ..+.+.++++++..
T Consensus       210 ~~~~~~~~~~~vkL~DFG~a~~~~~~~-----------~~gt~~y~aPE~~~  250 (336)
T 2vuw_A          210 KSSTIPSCGLQVSIIDYTLSRLERDGI-----------VVFCDVSMDEDLFT  250 (336)
T ss_dssp             EEEEEECTTEEEEECCCTTCBEEETTE-----------EECCCCTTCSGGGC
T ss_pred             ccccccCCCceEEEeeccccEecCCCc-----------EEEeecccChhhhc
Confidence                      89999999998876431           23455566666553

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.56  E-value=2.2e-14  Score=149.61  Aligned_cols=199  Identities=14%  Similarity=0.100  Sum_probs=127.0

Q ss_pred             hhhcccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004254          291 DVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (765)
Q Consensus       291 eiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (765)
                      ..+..|.. +.||+|++|.||+|+.  +|+.||||+.++......                          . ..-.++.
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~--------------------------~-~~~~~~~   66 (298)
T 1phk_A           14 GFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSF--------------------------S-AEEVQEL   66 (298)
T ss_dssp             -CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTC--------------------------C-HHHHHHH
T ss_pred             chhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEeccccccc--------------------------C-HHHHHHH
Confidence            34445543 7899999999999999  689999999865432110                          0 0001112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--H
Q 004254          368 ASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--S  445 (765)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~  445 (765)
                      .+      .+.+|.+.+.++.    ++++|.-..-+.+.....++||||++|++|.++... ...++...+...+.+  .
T Consensus        67 ~~------~~~~e~~~l~~l~----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~  135 (298)
T 1phk_A           67 RE------ATLKEVDILRKVS----GHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTE-KVTLSEKETRKIMRALLE  135 (298)
T ss_dssp             HH------HHHHHHHHHHHHT----TCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHH
T ss_pred             HH------HHHHHHHHHHHhc----CCCCEeeeeeeeccCCeEEEEEeccCCCcHHHHHhc-cCCCCHHHHHHHHHHHHH
Confidence            22      2344555555543    233332222223344567999999999999987542 234555544443333  3


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH------cCCC
Q 004254          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ------MGVL  519 (765)
Q Consensus       446 ~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~------lG~~  519 (765)
                      .+..+|..|++|+|+||.||+++.  ++.++|+|||++..+++....       ....++..++++++..      .+..
T Consensus       136 ~l~~lH~~~i~H~dl~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~~~  206 (298)
T 1phk_A          136 VICALHKLNIVHRDLKPENILLDD--DMNIKLTDFGFSCQLDPGEKL-------REVCGTPSYLAPEIIECSMNDNHPGY  206 (298)
T ss_dssp             HHHHHHHTTEECSCCSGGGEEECT--TCCEEECCCTTCEECCTTCCB-------CCCCSCGGGCCHHHHHHHHCTTSCCB
T ss_pred             HHHHHHHCCcccCCCCcceEEEcC--CCcEEEecccchhhcCCCccc-------ccccCCccccCHHHhccccccccccC
Confidence            478899999999999999999985  889999999999887653211       0123455666777664      2334


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 004254          520 VPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       520 ~~~~D~~~l~~~~~~~l  536 (765)
                      ++..|++++...+.+++
T Consensus       207 ~~~~Di~slG~~l~~l~  223 (298)
T 1phk_A          207 GKEVDMWSTGVIMYTLL  223 (298)
T ss_dssp             CTHHHHHHHHHHHHHHH
T ss_pred             CcccccHhHHHHHHHHH
Confidence            55678888887666554

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.56  E-value=1.1e-14  Score=163.21  Aligned_cols=182  Identities=15%  Similarity=0.119  Sum_probs=121.3

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|++|.||+|++ .+..||||+.+++....                                           -+|
T Consensus       190 ~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~-------------------------------------------~~~  226 (452)
T 1fmk_A          190 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-------------------------------------------EAF  226 (452)
T ss_dssp             EEEEECSSCEEEEEEETTTEEEEEEECCTTSSCH-------------------------------------------HHH
T ss_pred             eeecCCCCeEEEEEEECCCceEEEEEeccCCCCH-------------------------------------------HHH
Confidence            6899999999999999 56889999986542110                                           135


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      .+|++.+.++.    +..-+.+-.++.  ....+|||||++|++|.++..... ..++...+...+.+  ..+..+|..|
T Consensus       227 ~~E~~~l~~l~----hp~iv~~~~~~~--~~~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~  300 (452)
T 1fmk_A          227 LQEAQVMKKLR----HEKLVQLYAVVS--EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN  300 (452)
T ss_dssp             HHHHHHHHHCC----CTTBCCEEEEEC--SSSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCC----CCCEeeEEEEEc--CCceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            56776666552    222222222222  256799999999999999764322 23555554444333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||.||+++.  ++.++|+|||++..+.......     .........+++++....+..++..|++++...+.+
T Consensus       301 ivHrDlkp~Nill~~--~~~~kl~DfG~a~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~e  373 (452)
T 1fmk_A          301 YVHRDLRAANILVGE--NLVCKVADFGLARLIEDNEYTA-----RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE  373 (452)
T ss_dssp             CCCSCCSGGGEEECG--GGCEEECCCCTTC-------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             eeCCCCChhhEEECC--CCCEEECCCccceecCCCceec-----ccCCcccccccCHhHHhcCCCCccccHHhHHHHHHH
Confidence            999999999999986  7899999999998776432111     111233556788888887777778899999876655


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       374 l~  375 (452)
T 1fmk_A          374 LT  375 (452)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.56  E-value=4.5e-15  Score=155.68  Aligned_cols=182  Identities=18%  Similarity=0.175  Sum_probs=123.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|+||+|+.  +|+.||||+.++.....                           .        .      -+
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------------------~--------~------~~   66 (303)
T 3a7i_A           28 EKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAED---------------------------E--------I------ED   66 (303)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEETTTCST---------------------------T--------H------HH
T ss_pred             hhhcccCCeEEEEEEECCCCcEEEEEEecccccHH---------------------------H--------H------HH
Confidence            6799999999999998  59999999985532111                           0        0      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|+..+..+     .++++.-..-+.......++||||++|++|.++..  ...++...+...+.+  ..+..+|..|
T Consensus        67 ~~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~  139 (303)
T 3a7i_A           67 IQQEITVLSQC-----DSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLE--PGPLDETQIATILREILKGLDYLHSEK  139 (303)
T ss_dssp             HHHHHHHHHHC-----CCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHT--TSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC-----CCCCEeEEEEEEecCCeEEEEEEeCCCCcHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33444444333     22333222222233456799999999999998753  334555554444333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||.||+++.  +++++|+|||++..+......      .....++..++++++...+..++..|++++...+.+
T Consensus       140 i~H~dl~p~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~  211 (303)
T 3a7i_A          140 KIHRDIKAANVLLSE--HGEVKLADFGVAGQLTDTQIK------RNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIE  211 (303)
T ss_dssp             EECCCCSGGGEEECT--TSCEEECCCTTCEECBTTBCC------BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHH
T ss_pred             CccCCCChheEEECC--CCCEEEeecccceecCccccc------cCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHH
Confidence            999999999999985  889999999999877543210      011235667788888877777777899998877665


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       212 l~  213 (303)
T 3a7i_A          212 LA  213 (303)
T ss_dssp             HH
T ss_pred             Hc
Confidence            54

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.55  E-value=1e-14  Score=154.21  Aligned_cols=193  Identities=17%  Similarity=0.123  Sum_probs=117.0

Q ss_pred             hhcccC-cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004254          292 VFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (765)
Q Consensus       292 iF~~fd-~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (765)
                      .+..|. .+.||+|++|+||+|+.  +|+.||||+.++.....                                 .+..
T Consensus        32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~~~   78 (309)
T 2h34_A           32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSD---------------------------------PVFR   78 (309)
T ss_dssp             --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGS---------------------------------HHHH
T ss_pred             EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccC---------------------------------HHHH
Confidence            344554 37899999999999998  69999999985432211                                 0111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHH
Q 004254          369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESY  446 (765)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~  446 (765)
                      +      .+.+|+..+.++    . +++|.-..-+.......+++|||++|++|.++... ...++...+...+.  ...
T Consensus        79 ~------~~~~e~~~l~~l----~-hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~~  146 (309)
T 2h34_A           79 T------RMQREARTAGRL----Q-EPHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRR-QGPLAPPRAVAIVRQIGSA  146 (309)
T ss_dssp             H------HHHHHHHHHTTC----C-CTTBCCEEEEEEETTEEEEEEECCCCEEHHHHHHH-HCSCCHHHHHHHHHHHHHH
T ss_pred             H------HHHHHHHHHhhc----C-CCCeeEEEEEEeeCCeEEEEEEecCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHH
Confidence            1      233344433332    2 23332222222345667999999999999987542 22355554444333  234


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004254          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (765)
Q Consensus       447 L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~  526 (765)
                      +..+|..|++|+|+||.||+++.  ++.++|+|||++...........     ....++..+++++...-+..++..|++
T Consensus       147 l~~lH~~~i~H~dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~  219 (309)
T 2h34_A          147 LDAAHAAGATHRDVKPENILVSA--DDFAYLVDFGIASATTDEKLTQL-----GNTVGTLYYMAPERFSESHATYRADIY  219 (309)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECT--TSCEEECSCCC---------------------CCGGGCCGGGTCC----CCCHHH
T ss_pred             HHHHHHCcCCcCCCChHHEEEcC--CCCEEEecCccCccccccccccc-----cccCCCcCccCHHHHcCCCCCchHhHH
Confidence            78899999999999999999985  78999999999987765432211     112356667777776666667788999


Q ss_pred             HHHHHHHHHH
Q 004254          527 AVRRTAQFFL  536 (765)
Q Consensus       527 ~l~~~~~~~l  536 (765)
                      ++...+.+++
T Consensus       220 slG~il~~l~  229 (309)
T 2h34_A          220 ALTCVLYECL  229 (309)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9987766554

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.55  E-value=1.6e-14  Score=154.23  Aligned_cols=187  Identities=18%  Similarity=0.180  Sum_probs=123.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+......                          ..              ...
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--------------------------~~--------------~~~   74 (327)
T 3lm5_A           35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQ--------------------------DC--------------RAE   74 (327)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESEETTE--------------------------EC--------------HHH
T ss_pred             ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcch--------------------------HH--------------HHH
Confidence            6899999999999998  59999999885432111                          00              012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~li~--~~L~qi~~~  453 (765)
                      +.+|...+..+.    ++++|.-..-+.+.....++||||++|++|.++.... ...++...+...+.+  ..+..+|..
T Consensus        75 ~~~e~~~l~~l~----~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~  150 (327)
T 3lm5_A           75 ILHEIAVLELAK----SCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQN  150 (327)
T ss_dssp             HHHHHHHHHHTT----TCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcc----CCCCEEEEEEEEEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            344444444432    3343332222334456679999999999998865322 223455544444333  347889999


Q ss_pred             CccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      |++|+|+||.||+++.. +++.++|+|||++..++.....       .-..+++.++++++...+..++..|++++...+
T Consensus       151 givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il  223 (327)
T 3lm5_A          151 NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACEL-------REIMGTPEYLAPEILNYDPITTATDMWNIGIIA  223 (327)
T ss_dssp             TEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC----------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHH
T ss_pred             CeecCcCChHHEEEecCCCCCcEEEeeCccccccCCcccc-------ccccCCcCccCCeeecCCCCCchhhHHHHHHHH
Confidence            99999999999999742 2578999999999988654321       113467888899988877777788999998776


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       224 ~~ll  227 (327)
T 3lm5_A          224 YMLL  227 (327)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.55  E-value=9.6e-15  Score=159.59  Aligned_cols=197  Identities=14%  Similarity=0.135  Sum_probs=113.2

Q ss_pred             hhcccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004254          292 VFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (765)
Q Consensus       292 iF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (765)
                      +...|.. +.||+|++|.||+|+.  +|+.||||+.........                                  . 
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~----------------------------------~-   51 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNST----------------------------------D-   51 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHH----------------------------------H-
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChH----------------------------------H-
Confidence            3444543 7899999999999998  699999998743221110                                  0 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HH
Q 004254          369 SVLYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VE  444 (765)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~  444 (765)
                           .-.+.+|...+..+.    ++++| .+-.++... ....+|||||++| .|.++..  ...++...+...+  +-
T Consensus        52 -----~~~~~~E~~~l~~l~----~h~niv~l~~~~~~~~~~~~~lv~e~~~~-~L~~~~~--~~~~~~~~~~~i~~qi~  119 (388)
T 3oz6_A           52 -----AQRTFREIMILTELS----GHENIVNLLNVLRADNDRDVYLVFDYMET-DLHAVIR--ANILEPVHKQYVVYQLI  119 (388)
T ss_dssp             -----HHHHHHHHHHHHHTT----TCTTBCCEEEEEECTTSSCEEEEEECCSE-EHHHHHH--HTCCCHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHhcc----CCCCCCeeeeEEecCCCCEEEEEecccCc-CHHHHHH--cCCCCHHHHHHHHHHHH
Confidence                 012233444444332    23332 233333221 2346999999996 5666543  2234444333222  33


Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhH-------------HHH--HHHHHHHhhcCHHHH
Q 004254          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR-------------EGL--LEAFYGIYEKDADKV  509 (765)
Q Consensus       445 ~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r-------------~~l--~~l~~ai~~~D~~~i  509 (765)
                      ..++.+|..|++|+|+||+||+++.  ++.++|+|||++..+....+             ..+  ......-..+++.++
T Consensus       120 ~~L~~LH~~~ivHrDlkp~NIll~~--~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~  197 (388)
T 3oz6_A          120 KVIKYLHSGGLLHRDMKPSNILLNA--ECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYR  197 (388)
T ss_dssp             HHHHHHHHTTEECCCCCGGGEEECT--TCCEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGC
T ss_pred             HHHHHHHhCCEEeCCCCHHHeEEcC--CCCEEecCCcccccccccccccccccccccccccccccccccccCCcccCCcC
Confidence            4588899999999999999999986  88999999999987643100             000  001112234667788


Q ss_pred             HHHHHHc-CCCCCCCCHHHHHHHHHHHHH
Q 004254          510 LQAMVQM-GVLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       510 ~~~l~~l-G~~~~~~D~~~l~~~~~~~l~  537 (765)
                      ++++... ...+...|++++...+.+++.
T Consensus       198 aPE~~~~~~~~~~~~DiwSlG~il~ell~  226 (388)
T 3oz6_A          198 APEILLGSTKYTKGIDMWSLGCILGEILC  226 (388)
T ss_dssp             CHHHHTTCCCCCTHHHHHHHHHHHHHHHH
T ss_pred             CHHHhcCCCCCCChhhHHHHHHHHHHHHh
Confidence            8887754 455667899999887766653

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.55  E-value=1.4e-15  Score=161.31  Aligned_cols=186  Identities=16%  Similarity=0.144  Sum_probs=123.3

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|++|.||+|+. +|+.||||+.++.....                                         .+..+
T Consensus        36 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-----------------------------------------~~~~~   74 (326)
T 3uim_A           36 NILGRGGFGKVYKGRLADGTLVAVKRLKEERTQG-----------------------------------------GELQF   74 (326)
T ss_dssp             TEEECCSSSEEEEECCSSSCCEEEEECCC----------------------------------------------CCCHH
T ss_pred             eeEecCCCcEEEEEEecCCCEEEEEEeccccCch-----------------------------------------HHHHH
Confidence            7899999999999998 79999999885532110                                         01123


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---cCCCHHHHHHHH--HHHHHHHHHh
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYA--VESYLEQILS  452 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---~g~d~~~ia~~l--i~~~L~qi~~  452 (765)
                      .+|++.+..+    . +++|.-..-+....+..++||||++|++|.++.....   ..++...+...+  +...+..+|.
T Consensus        75 ~~e~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~  149 (326)
T 3uim_A           75 QTEVEMISMA----V-HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHD  149 (326)
T ss_dssp             HHHHHGGGTC----C-CTTBCCCCEEECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc----c-CCCccceEEEEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4444433322    2 2333222222334566799999999999998754321   124444433333  2345788999


Q ss_pred             C---CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          453 H---GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       453 ~---GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      .   |++|+|+||+||+++.  ++.++|+|||++..++......     .....+++.++++++...+..++..|++++.
T Consensus       150 ~~~~~ivH~Dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG  222 (326)
T 3uim_A          150 HCDPKIIHRDVKAANILLDE--EFEAVVGDFGLAKLMDYKDTHV-----TTAVRGTIGHIAPEYLSTGKSSEKTDVFGYG  222 (326)
T ss_dssp             SSSSCEECCCCSGGGEEECT--TCCEEECCCSSCEECCSSSSCE-----ECCCCSCGGGCCHHHHHHSEECHHHHHHHHH
T ss_pred             CCCCCeEeCCCchhhEEECC--CCCEEeccCccccccCcccccc-----cccccCCcCccCHHHhccCCCCccccchhHH
Confidence            8   9999999999999985  8899999999998765332110     0112357778888888777777778999998


Q ss_pred             HHHHHHHH
Q 004254          530 RTAQFFLN  537 (765)
Q Consensus       530 ~~~~~~l~  537 (765)
                      ..+.+++.
T Consensus       223 ~il~~l~~  230 (326)
T 3uim_A          223 VMLLELIT  230 (326)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            87766653

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.55  E-value=1.1e-14  Score=152.22  Aligned_cols=183  Identities=16%  Similarity=0.156  Sum_probs=117.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||+|+..+...+.                            .              -+
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~----------------------------~--------------~~   62 (302)
T 2j7t_A           25 GELGDGAFGKVYKAKNKETGALAAAKVIETKSEEE----------------------------L--------------ED   62 (302)
T ss_dssp             EEEECSTTCCEEEEEETTTCCEEEEEEEC----CC----------------------------H--------------HH
T ss_pred             ceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHH----------------------------H--------------HH
Confidence            5799999999999999  59999999885432111                            0              12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|++.+..+     .+++|.-..-+.......++||||++|++|.++.......++...+...+..  ..+..+|..|
T Consensus        63 ~~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~  137 (302)
T 2j7t_A           63 YIVEIEILATC-----DHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKR  137 (302)
T ss_dssp             HHHHHHHHHHC-----CCTTBCCEEEEEECC-CEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcC-----CCCCEeeeeeeeeeCCeEEEEEEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            34455544443     2333322222223356779999999999998875443445665555444333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-----cCCCCCCCCHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-----MGVLVPTGDTTAVR  529 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~-----lG~~~~~~D~~~l~  529 (765)
                      ++|+|+||.||+++.  ++.++|+|||++.........      .....++..++++++..     -+..++..|++++.
T Consensus       138 i~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG  209 (302)
T 2j7t_A          138 IIHRDLKAGNVLMTL--EGDIRLADFGVSAKNLKTLQK------RDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLG  209 (302)
T ss_dssp             CCCCCCSGGGEEECT--TSCEEECCCHHHHHHHHHHHC-----------CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHH
T ss_pred             cccCCCCHHHEEECC--CCCEEEEECCCCccccccccc------cccccCChhhcCCeeeccccCCCCCCchhhhHHHHH
Confidence            999999999999985  889999999987543221110      01123566677777763     34455667999888


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       210 ~il~~l~  216 (302)
T 2j7t_A          210 ITLIEMA  216 (302)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7665554

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.55  E-value=2.2e-14  Score=151.18  Aligned_cols=191  Identities=16%  Similarity=0.092  Sum_probs=116.7

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||.|++|.||+|+.  +|+.||||+.+......                                    ..      
T Consensus        18 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~------------------------------------~~------   55 (316)
T 2ac3_A           18 EDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHI------------------------------------RS------   55 (316)
T ss_dssp             CCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCC------------------------------------HH------
T ss_pred             CceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchh------------------------------------HH------
Confidence            36799999999999998  69999999985432111                                    00      


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      .+.+|++.+.++    ..+++|.-..-+.......++||||++|++|.+..... ..++...+...+  +-..+..+|..
T Consensus        56 ~~~~E~~~l~~~----~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH~~  130 (316)
T 2ac3_A           56 RVFREVEMLYQC----QGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKR-RHFNELEASVVVQDVASALDFLHNK  130 (316)
T ss_dssp             HHHHHHHHHHHT----CCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh----cCCCCeeeEEEEEeeCCEEEEEEEcCCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            223344433332    12333322222223356679999999999998875432 234444443333  23457889999


Q ss_pred             CccccCCCCCcEEEeecCCC---cEEEEeecceeccChhhHHH-HHHHHHHHhhcCHHHHHHHHHHc-----CCCCCCCC
Q 004254          454 GFFHADPHPGNIAVDDVNGG---RLIFYDFGMMGSISPNIREG-LLEAFYGIYEKDADKVLQAMVQM-----GVLVPTGD  524 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g---~l~LiDFGlv~~L~~~~r~~-l~~l~~ai~~~D~~~i~~~l~~l-----G~~~~~~D  524 (765)
                      |++|+|+||+||+++.  ++   .++|+|||++..+....... ....-.....++..++++++...     +..++..|
T Consensus       131 ~ivH~dlkp~Nil~~~--~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~D  208 (316)
T 2ac3_A          131 GIAHRDLKPENILCEH--PNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCD  208 (316)
T ss_dssp             TCCCCCCCGGGEEESC--SSSSCSEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHH
T ss_pred             CceeCCCCHHHEEEcc--CCCcCceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccc
Confidence            9999999999999985  44   39999999988765322110 00000111235677777777653     34567789


Q ss_pred             HHHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFLN  537 (765)
Q Consensus       525 ~~~l~~~~~~~l~  537 (765)
                      ++++...+.+++.
T Consensus       209 iwslG~il~~l~~  221 (316)
T 2ac3_A          209 LWSLGVILYILLS  221 (316)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHhHHHHHHHHHH
Confidence            9999887766553

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.55  E-value=1.8e-14  Score=151.77  Aligned_cols=189  Identities=19%  Similarity=0.145  Sum_probs=121.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+......                       . ....             ..+
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-----------------------~-~~~~-------------~~~   57 (308)
T 3g33_A           15 AEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGG-----------------------G-GGGL-------------PIS   57 (308)
T ss_dssp             EEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCT-----------------------T-SSCC-------------CHH
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEecccccc-----------------------c-cccc-------------chh
Confidence            6899999999999997  69999999885321110                       0 0000             011


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCC----CeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHH--HHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTT----PQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAV--ESYLEQ  449 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st----~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li--~~~L~q  449 (765)
                      +.+|...+.++.. +.+..-+.+-.++....+    ..+++|||++| +|.++..... .+++...+...+.  -..+..
T Consensus        58 ~~~e~~~l~~l~~-~~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~  135 (308)
T 3g33_A           58 TVREVALLRRLEA-FEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ-DLRTYLDKAPPPGLPAETIKDLMRQFLRGLDF  135 (308)
T ss_dssp             HHHHHHHHHHHHH-HCCTTBCCEEEEEEECCSSSEEEEEEEEECCCC-BHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh-cCCCCeEEeeeeeeccCCCCceeEEEEehhhhc-CHHHHHhhccCCCCCHHHHHHHHHHHHHHHHH
Confidence            2233333444432 122222233333322222    35899999997 7776543222 2255554444333  345888


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..|++|+|+||+||+++.  ++.++|+|||++..++.....       ....+++.++++++...+..++..|++++.
T Consensus       136 lH~~~ivH~Dlkp~Nil~~~--~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG  206 (308)
T 3g33_A          136 LHANCIVHRDLKPENILVTS--GGTVKLADFGLARIYSYQMAL-------TPVVVTLWYRAPEVLLQSTYATPVDMWSVG  206 (308)
T ss_dssp             HHHTTCCCSCCCTTTEEECT--TSCEEECSCSCTTTSTTCCCS-------GGGGCCCSSCCHHHHHTSCCCSTHHHHHHH
T ss_pred             HHHCCcccCCCCHHHEEEcC--CCCEEEeeCccccccCCCccc-------CCccccccccCchHHcCCCCCchHHHHHHH
Confidence            99999999999999999985  889999999999877543221       112456778888888877788888999998


Q ss_pred             HHHHHH
Q 004254          530 RTAQFF  535 (765)
Q Consensus       530 ~~~~~~  535 (765)
                      ..+.++
T Consensus       207 ~il~~l  212 (308)
T 3g33_A          207 CIFAEM  212 (308)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            765544

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.55  E-value=1.2e-14  Score=157.33  Aligned_cols=184  Identities=11%  Similarity=0.039  Sum_probs=124.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|+||+|+.  +|+.||||+.+..-.                                     ..+      .
T Consensus        43 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-------------------------------------~~~------~   79 (397)
T 1wak_A           43 RKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEH-------------------------------------YTE------T   79 (397)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSCHH-------------------------------------HHH------H
T ss_pred             EEeeecCCeeEEEEEecCCCeEEEEEEEecCCc-------------------------------------chH------H
Confidence            6899999999999998  699999999854210                                     001      2


Q ss_pred             HHHHHHHHHHHHHhcCCCC-ccccceeeecc------CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHH
Q 004254          377 YTQEAANAELFASNFKDMD-YVKVPTIFWEY------TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYL  447 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~-~V~vP~vy~e~------st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L  447 (765)
                      +.+|++.+..+++.....+ ...+.+++..+      ....+|||||+.|..+..+......+++...+...+.+  ..+
T Consensus        80 ~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL  159 (397)
T 1wak_A           80 ALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGL  159 (397)
T ss_dssp             HHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceEEEEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Confidence            3455566666654322111 22344444432      23569999999766555554332234555544444333  347


Q ss_pred             HHHHhC-CccccCCCCCcEEEeecCCC-------------------------------------------------cEEE
Q 004254          448 EQILSH-GFFHADPHPGNIAVDDVNGG-------------------------------------------------RLIF  477 (765)
Q Consensus       448 ~qi~~~-GffHaDpHPGNILV~~~~~g-------------------------------------------------~l~L  477 (765)
                      ..+|.. |++|+|+||+|||++.  ++                                                 .++|
T Consensus       160 ~~lH~~~givHrDikp~NIll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl  237 (397)
T 1wak_A          160 DYLHTKCRIIHTDIKPENILLSV--NEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKI  237 (397)
T ss_dssp             HHHHHTTCEECCCCSGGGEEECC--CHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEE
T ss_pred             HHHHHhCCEecCCCCHHHeeEec--cchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEe
Confidence            889998 9999999999999985  33                                                 7999


Q ss_pred             EeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          478 YDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       478 iDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +|||++..+......         ..++..++++++..-+..++..|++++...+.+++
T Consensus       238 ~DfG~a~~~~~~~~~---------~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell  287 (397)
T 1wak_A          238 ADLGNACWVHKHFTE---------DIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELA  287 (397)
T ss_dssp             CCGGGCEETTBCSCS---------CCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCcc---------CCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHh
Confidence            999999877654211         23577888888888777777889999988776654

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.55  E-value=1.3e-14  Score=158.55  Aligned_cols=187  Identities=14%  Similarity=0.082  Sum_probs=122.8

Q ss_pred             ccccccceeEEEEEEeC---------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~---------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (765)
                      +.||.|++|.||+|+..         +..||||+.++...+.                                      
T Consensus        75 ~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~--------------------------------------  116 (382)
T 3tt0_A           75 KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK--------------------------------------  116 (382)
T ss_dssp             EEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHH--------------------------------------
T ss_pred             eEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHH--------------------------------------
Confidence            78999999999999962         3689999986543211                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCC
Q 004254          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVD  434 (765)
Q Consensus       370 ~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d  434 (765)
                         ..-++.+|++.+.++.    .+++|.-..-+.......++||||++|++|.++.....               ..++
T Consensus       117 ---~~~~~~~E~~~l~~l~----~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~  189 (382)
T 3tt0_A          117 ---DLSDLISEMEMMKMIG----KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLS  189 (382)
T ss_dssp             ---HHHHHHHHHHHHHHHC----CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCC
T ss_pred             ---HHHHHHHHHHHHHHhc----CCchhhhheeeeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccC
Confidence               0113445555555542    23333222222233456799999999999998764322               1245


Q ss_pred             HHHHHHHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004254          435 RKRLGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  512 (765)
Q Consensus       435 ~~~ia~~li--~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~  512 (765)
                      ...+...+.  ...+..+|..|++|+|+||+||+++.  ++.++|+|||++..+........    .......+.+++++
T Consensus       190 ~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~--~~~~kL~DFG~a~~~~~~~~~~~----~~~~~~t~~y~aPE  263 (382)
T 3tt0_A          190 SKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTE--DNVMKIADFGLARDIHHIDYYKK----TTNGRLPVKWMAPE  263 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECT--TCCEEECSCSCCCCSSCCCTTCC----CTTCCCGGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCEecCCCCcceEEEcC--CCcEEEcccCccccccccccccc----ccCCCCCcceeCHH
Confidence            454444433  33478899999999999999999986  78999999999987654221000    00012234577788


Q ss_pred             HHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          513 MVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       513 l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ...-+..++..|++++...+.+++
T Consensus       264 ~~~~~~~~~~~DiwslG~il~ell  287 (382)
T 3tt0_A          264 ALFDRIYTHQSDVWSFGVLLWEIF  287 (382)
T ss_dssp             HHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCchhHHHHHHHHHHHHH
Confidence            877776777789999887665554

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.55  E-value=5.6e-15  Score=159.21  Aligned_cols=181  Identities=15%  Similarity=0.152  Sum_probs=120.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.++.....                                   ..+      .
T Consensus        39 ~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~-----------------------------------~~~------~   77 (360)
T 3eqc_A           39 SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPA-----------------------------------IRN------Q   77 (360)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHH-----------------------------------HHH------H
T ss_pred             eeecCCCCeEEEEEEECCCCcEEEEEEeccccCHH-----------------------------------HHH------H
Confidence            6899999999999999  59999999986653221                                   011      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhC-
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSH-  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~-  453 (765)
                      +.+|++.+..+    . +++|.-..-+.......++||||++|++|.++.... ..++...+...+.  ...+..+|.. 
T Consensus        78 ~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~  151 (360)
T 3eqc_A           78 IIRELQVLHEC----N-SPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA-GRIPEQILGKVSIAVIKGLTYLREKH  151 (360)
T ss_dssp             HHHHHGGGGGC----C-CTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC----C-CCCEEEEeEEEEECCEEEEEEECCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            23333333222    2 233322222223356679999999999999875422 2344444333332  2347778874 


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||+||+++.  ++.++|+|||++..+......        ...++..++++++...+..++..|++++...+.
T Consensus       152 ~i~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~--------~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~  221 (360)
T 3eqc_A          152 KIMHRDVKPSNILVNS--RGEIKLCDFGVSGQLIDSMAN--------SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLV  221 (360)
T ss_dssp             CCCCSCCSGGGEEECT--TCCEEECCCCCCHHHHHHC------------CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred             CEEcCCccHHHEEECC--CCCEEEEECCCCccccccccc--------CCCCCCCeECHHHHcCCCCCchhhHHHHHHHHH
Confidence            9999999999999986  889999999998765433221        124567788888887666666779999887776


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       222 ~l~  224 (360)
T 3eqc_A          222 EMA  224 (360)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.55  E-value=3.7e-15  Score=155.80  Aligned_cols=188  Identities=18%  Similarity=0.186  Sum_probs=120.3

Q ss_pred             ccccccceeEEEEEEe------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +.||+|++|.||+|++      +|+.||||+.++.....                           .             
T Consensus        27 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~---------------------------~-------------   66 (302)
T 4e5w_A           27 RDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGN---------------------------H-------------   66 (302)
T ss_dssp             EEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----C---------------------------C-------------
T ss_pred             hccCCCCceEEEEEEEccccCccCeEEEEEEecccccch---------------------------h-------------
Confidence            6899999999999993      58999999986532111                           0             


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLE  448 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~  448 (765)
                       .-++.+|++.+.++    . ++++ .+-.++.+. ....++||||++|++|.++.......++...+...+.+  ..+.
T Consensus        67 -~~~~~~E~~~l~~l----~-h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~  140 (302)
T 4e5w_A           67 -IADLKKEIEILRNL----Y-HENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMD  140 (302)
T ss_dssp             -HHHHHHHHHHHHTC----C-CTTBCCEEEEEEC---CCEEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhC----C-CCCeeeeeeEEecCCCceEEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHH
Confidence             01233454444443    2 2322 222222221 14468999999999999976444444565555444333  4588


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      .+|..|++|+|+||+||+++.  ++.++|+|||++..+........   ......++..+++++....+..++..|++++
T Consensus       141 ~lH~~~i~H~dikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  215 (302)
T 4e5w_A          141 YLGSRQYVHRDLAARNVLVES--EHQVKIGDFGLTKAIETDKEYYT---VKDDRDSPVFWYAPECLMQSKFYIASDVWSF  215 (302)
T ss_dssp             HHHHTTEECSCCSGGGEEEEE--TTEEEECCCTTCEECCTTCCEEE---CCCCTTCCGGGCCHHHHHHCEEEHHHHHHHH
T ss_pred             HhhcCCcccCCCchheEEEcC--CCCEEECcccccccccCCCccee---ccCCCCCCccccCCeeecCCCCCcchhHHHH
Confidence            899999999999999999986  88999999999987754321000   0001123444667777666555667799998


Q ss_pred             HHHHHHHHH
Q 004254          529 RRTAQFFLN  537 (765)
Q Consensus       529 ~~~~~~~l~  537 (765)
                      ...+.+++.
T Consensus       216 G~il~~l~~  224 (302)
T 4e5w_A          216 GVTLHELLT  224 (302)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            877766653

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.55  E-value=1e-14  Score=165.74  Aligned_cols=189  Identities=15%  Similarity=0.134  Sum_probs=127.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+........                                            +
T Consensus        13 ~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~--------------------------------------------~   48 (483)
T 3sv0_A           13 RKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHP--------------------------------------------Q   48 (483)
T ss_dssp             CCCEECSSCEEEEEEETTTCCEEEEEEEETTCSSC--------------------------------------------C
T ss_pred             EEEeeCCCEEEEEEEECCCCcEEEEEEeccccccH--------------------------------------------H
Confidence            6899999999999998  59999999864321110                                            1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +..|.+.+..+    .+.+.+.....+.......+|||||+ |++|.++.......++...+...+.+  ..+..+|..|
T Consensus        49 ~~~E~~il~~L----~~~~~i~~i~~~~~~~~~~~lvme~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~g  123 (483)
T 3sv0_A           49 LLYESKIYRIL----QGGTGIPNVRWFGVEGDYNVLVMDLL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKS  123 (483)
T ss_dssp             HHHHHHHHHHT----TTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHh----cCCCCCCeEEEEEeeCCEEEEEEECC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            23344444333    23344444455555566779999999 88999876543445666655554433  3488899999


Q ss_pred             ccccCCCCCcEEEee-cCCCcEEEEeecceeccChhhHHHHHHH-HHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLEA-FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       455 ffHaDpHPGNILV~~-~~~g~l~LiDFGlv~~L~~~~r~~l~~l-~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      ++|+|+||.|||+.. ..++.++|+|||++..+........... ......++..++++++..-+......|++++...+
T Consensus       124 IvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil  203 (483)
T 3sv0_A          124 FLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVL  203 (483)
T ss_dssp             EECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             EeecccCcceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHH
Confidence            999999999999941 1378999999999987754321100000 00012356677888887766666777999998877


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       204 ~ell  207 (483)
T 3sv0_A          204 MYFL  207 (483)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6665

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.55  E-value=3e-15  Score=164.25  Aligned_cols=190  Identities=18%  Similarity=0.153  Sum_probs=119.7

Q ss_pred             ccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          295 RFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       295 ~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +|+. +.||.|++|+||+|+.  +|+.||||+.+......-.                                      
T Consensus        39 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~--------------------------------------   80 (373)
T 2r5t_A           39 DFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKK--------------------------------------   80 (373)
T ss_dssp             GEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-----------------------------------------
T ss_pred             heEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhH--------------------------------------
Confidence            4443 7899999999999999  5899999998543211100                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQ  449 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~q  449 (765)
                       .+..+..|...   +.... ++++|.-..-+.......+|||||++|++|.+.... ...++...+...+  +-..+..
T Consensus        81 -~~~~~~~e~~~---ll~~~-~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~  154 (373)
T 2r5t_A           81 -EEKHIMSERNV---LLKNV-KHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQR-ERCFLEPRARFYAAEIASALGY  154 (373)
T ss_dssp             -----------C---CBCCC-CCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHH---HHHhC-CCCCCCCEEEEEEeCCEEEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHH
Confidence             00011111110   00111 233332222222334567999999999999886532 2234443333322  3345788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..|++|+|+||+||+++.  +|.++|+|||++.........      .....+++.++++++..........|++++.
T Consensus       155 LH~~givHrDlkp~NIll~~--~g~ikL~DFG~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG  226 (373)
T 2r5t_A          155 LHSLNIVYRDLKPENILLDS--QGHIVLTDFGLCKENIEHNST------TSTFCGTPEYLAPEVLHKQPYDRTVDWWCLG  226 (373)
T ss_dssp             HHHTTCCCCCCCGGGEEECT--TSCEEECCCCBCGGGBCCCCC------CCSBSCCCCCCCHHHHTTCCCCTHHHHHHHH
T ss_pred             HHHCCceecCCCHHHEEECC--CCCEEEeeCccccccccCCCc------cccccCCccccCHHHhCCCCCCchhhhHHHH
Confidence            99999999999999999985  899999999998763221100      0112467788889888776667778999998


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       227 ~il~ell  233 (373)
T 2r5t_A          227 AVLYEML  233 (373)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776655

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.55  E-value=2.8e-14  Score=150.97  Aligned_cols=188  Identities=14%  Similarity=0.162  Sum_probs=118.3

Q ss_pred             cccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      ..|.. +.||+|++|.||+|+.  +|+.||||+........                                       
T Consensus        24 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------------------   64 (326)
T 2x7f_A           24 GIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEE---------------------------------------   64 (326)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTT---------------------------------------
T ss_pred             CcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccH---------------------------------------
Confidence            34443 7899999999999999  69999999985432110                                       


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccc-cceeeecc-----CCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHH-
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYVK-VPTIFWEY-----TTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA-  442 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V~-vP~vy~e~-----st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~l-  442 (765)
                          -++.+|...+.++.    ++++|. +-..+...     ....++||||++|++|.++.... ...++...+...+ 
T Consensus        65 ----~~~~~e~~~l~~l~----~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~  136 (326)
T 2x7f_A           65 ----EEIKQEINMLKKYS----HHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICR  136 (326)
T ss_dssp             ----HHHHHHHHHHHHHC----CSTTBCCEEEEEEECC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHhcc----CCCCeeeeeeEEeeccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHH
Confidence                12334444444442    223222 22222211     34579999999999999876432 2345555444333 


Q ss_pred             -HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-----c
Q 004254          443 -VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-----M  516 (765)
Q Consensus       443 -i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~-----l  516 (765)
                       +...+..+|..|++|+|+||+||+++.  ++.++|+|||++..++.....      .....++..++++++..     .
T Consensus       137 qi~~~l~~lH~~~ivH~dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~  208 (326)
T 2x7f_A          137 EILRGLSHLHQHKVIHRDIKGQNVLLTE--NAEVKLVDFGVSAQLDRTVGR------RNTFIGTPYWMAPEVIACDENPD  208 (326)
T ss_dssp             HHHHHHHHHHHTTCCCCCCSGGGEEECT--TCCEEECCCTTTC-------------------CCGGGCCHHHHC------
T ss_pred             HHHHHHHHHHHCCccccCCcHHHEEEcC--CCCEEEeeCcCceecCcCccc------cccccCCccccChhhhccccccC
Confidence             334578899999999999999999985  889999999999877543211      11123566777787765     3


Q ss_pred             CCCCCCCCHHHHHHHHHHHH
Q 004254          517 GVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       517 G~~~~~~D~~~l~~~~~~~l  536 (765)
                      +..++..|++++...+.+++
T Consensus       209 ~~~~~~~Di~slG~il~~l~  228 (326)
T 2x7f_A          209 ATYDFKSDLWSLGITAIEMA  228 (326)
T ss_dssp             --CCTTHHHHHHHHHHHHHH
T ss_pred             cCCCccchHHHHHHHHHHHH
Confidence            45567789999987766654

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.55  E-value=4.9e-15  Score=158.06  Aligned_cols=207  Identities=15%  Similarity=0.113  Sum_probs=126.1

Q ss_pred             CCChhhhhcccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHH
Q 004254          286 GAPLDDVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (765)
Q Consensus       286 G~~~eeiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~  362 (765)
                      |..+.++-..|.. +.||+|++|.||+|+.  +|+.||||+.++.....                 ..+           
T Consensus        18 ~~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-----------------~~~-----------   69 (345)
T 3hko_A           18 GGSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQ-----------------INP-----------   69 (345)
T ss_dssp             CBCHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC-------------------------------
T ss_pred             CchhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcc-----------------cCH-----------
Confidence            3455555556654 7899999999999998  68999999884321100                 000           


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc-----------
Q 004254          363 IYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL-----------  431 (765)
Q Consensus       363 i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~-----------  431 (765)
                         +      ..-.+.+|++.+.++.     +++|.-..-+.......+|||||++|++|.+.......           
T Consensus        70 ---~------~~~~~~~E~~~l~~l~-----hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~  135 (345)
T 3hko_A           70 ---K------DVERIKTEVRLMKKLH-----HPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVV  135 (345)
T ss_dssp             ---C------HHHHHHHHHHHHHHCC-----CTTBCCEEEEEECSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEE
T ss_pred             ---H------HHHHHHHHHHHHHhCC-----CCCcceeehhhccCCeEEEEEeCCCCCcHHHHHHHhhcccccccccccc
Confidence               0      0113455666555542     33332222222334567999999999999886521000           


Q ss_pred             --------------------------C--CCHHHHHHH--HHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeec
Q 004254          432 --------------------------G--VDRKRLGRY--AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFG  481 (765)
Q Consensus       432 --------------------------g--~d~~~ia~~--li~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFG  481 (765)
                                                .  .+...+...  .+...+..+|..|++|+|+||.||+++....+.++|+|||
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg  215 (345)
T 3hko_A          136 KTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFG  215 (345)
T ss_dssp             CCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSCCEEECCCT
T ss_pred             cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEecCCCceEEEeecc
Confidence                                      0  011111111  1233478889999999999999999985223389999999


Q ss_pred             ceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc--CCCCCCCCHHHHHHHHHHHH
Q 004254          482 MMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM--GVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       482 lv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l--G~~~~~~D~~~l~~~~~~~l  536 (765)
                      ++..+..........  .....+++.++++++...  +..++..|++++...+.+++
T Consensus       216 ~a~~~~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~  270 (345)
T 3hko_A          216 LSKEFYKLNNGEYYG--MTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLL  270 (345)
T ss_dssp             TCEEGGGTTCC----------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHH
T ss_pred             ccccccccCcccccc--ccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHH
Confidence            998764422111100  112346778888988864  45566789999987665554

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.55  E-value=1.1e-14  Score=157.39  Aligned_cols=190  Identities=14%  Similarity=0.089  Sum_probs=122.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+......                  .+     ...              .-+
T Consensus        30 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~------------------~~-----~~~--------------~~~   72 (351)
T 3c0i_A           30 EVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTS------------------SP-----GLS--------------TED   72 (351)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHT------------------SS-----SCC--------------HHH
T ss_pred             eEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccc------------------cc-----cch--------------HHH
Confidence            6899999999999998  69999999873211000                  00     000              013


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-c--CCCHHHHHHHH--HHHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-L--GVDRKRLGRYA--VESYLEQIL  451 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~--g~d~~~ia~~l--i~~~L~qi~  451 (765)
                      +.+|+..+..+    . +++|.-..-+.+.....+|||||++|++|.+...... .  .++...+...+  +-..+..+|
T Consensus        73 ~~~E~~~l~~l----~-hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH  147 (351)
T 3c0i_A           73 LKREASICHML----K-HPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH  147 (351)
T ss_dssp             HHHHHHHHHHC----C-CTTBCCEEEEEEETTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----C-CCCCCcEEEEEEeCCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            44555555444    2 3333222222233556799999999999977543221 1  24444433332  233478899


Q ss_pred             hCCccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      ..|++|+|+||.||+++.. .++.++|+|||++..+......      .....+++.++++++..-+..++..|++++..
T Consensus       148 ~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~  221 (351)
T 3c0i_A          148 DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLV------AGGRVGTPHFMAPEVVKREPYGKPVDVWGCGV  221 (351)
T ss_dssp             HTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSCB------CCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHH
T ss_pred             HCCceeccCChHHeEEecCCCCCcEEEecCcceeEecCCCee------ecCCcCCcCccCHHHHcCCCCCchHhhHHHHH
Confidence            9999999999999999751 1235999999999887653210      01124678889999988777777889999987


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       222 il~~ll  227 (351)
T 3c0i_A          222 ILFILL  227 (351)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.55  E-value=5.8e-15  Score=153.28  Aligned_cols=183  Identities=14%  Similarity=0.054  Sum_probs=122.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+++....                                           -+
T Consensus        19 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-------------------------------------------~~   55 (288)
T 3kfa_A           19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-------------------------------------------EE   55 (288)
T ss_dssp             EESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHH-------------------------------------------HH
T ss_pred             eecCCCCceeEEEeEecCCCEEEEEEecCcCHHHH-------------------------------------------HH
Confidence            6899999999999999  49999999885432110                                           12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      +.+|++.+.++.     ++++.-..-+.......++||||++|++|.++.... ...++...+...+  +-..+..+|..
T Consensus        56 ~~~E~~~l~~l~-----h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~  130 (288)
T 3kfa_A           56 FLKEAAVMKEIK-----HPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK  130 (288)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-----CCCEeeEEEEEccCCCEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHC
Confidence            344555555442     233322222223445679999999999999875432 2234544444333  33457889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||.||+++.  ++.++|+|||++..++......     ......++.+++++....+..++..|++++...+.
T Consensus       131 ~i~H~dikp~Nil~~~--~~~~~l~Dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~  203 (288)
T 3kfa_A          131 NFIHRDLAARNCLVGE--NHLVKVADFGLSRLMTGDTYTA-----HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLW  203 (288)
T ss_dssp             TCCCSCCSGGGEEECG--GGCEEECCCCGGGTSCSSSSEE-----ETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             CccCCCCCcceEEEcC--CCCEEEccCccceeccCCcccc-----ccCCccccCcCChhhhccCCCCchhhHHHHHHHHH
Confidence            9999999999999986  7899999999998766432110     01112345577777777676677789999887766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       204 ~ll  206 (288)
T 3kfa_A          204 EIA  206 (288)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.55  E-value=1.5e-14  Score=155.34  Aligned_cols=186  Identities=16%  Similarity=0.171  Sum_probs=117.3

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||.|++|.||+|.. +|+.||||+.+......                                  +.      .-.+
T Consensus        15 ~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~----------------------------------~~------~~~~   54 (343)
T 3dbq_A           15 KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADN----------------------------------QT------LDSY   54 (343)
T ss_dssp             EEESCCSSEEEEEEECTTSCEEEEEEEECTTCCH----------------------------------HH------HHHH
T ss_pred             EEEecCCCeEEEEEEeCCCCEEEEEEeeccccch----------------------------------HH------HHHH
Confidence            6899999999999999 79999999885432111                                  00      0134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~Gf  455 (765)
                      .+|+..+.++.+   +.++|.-..-+.......+||||+ .|++|.++... ...++...+...+  +-..+..+|..|+
T Consensus        55 ~~E~~~l~~l~~---~~~~iv~~~~~~~~~~~~~lv~e~-~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~al~~lH~~~i  129 (343)
T 3dbq_A           55 RNEIAYLNKLQQ---HSDKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGI  129 (343)
T ss_dssp             HHHHHHHHHHTT---TCTTBCCEEEEEECSSEEEEEECC-CSEEHHHHHHH-SCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhhh---cCCceEEEeeeEeeCCEEEEEEeC-CCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            556666666543   113332222233334567999995 56688876532 2334544443333  2344788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----------CCCCCCCC
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----------GVLVPTGD  524 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-----------G~~~~~~D  524 (765)
                      +|+|+||.||+++   ++.++|+|||++..+.+......    .....+++.++++++...           +..++..|
T Consensus       130 iHrDikp~NIll~---~~~~kl~DFG~a~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~D  202 (343)
T 3dbq_A          130 VHSDLKPANFLIV---DGMLKLIDFGIANQMQPDTTSVV----KDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSD  202 (343)
T ss_dssp             CCCCCCGGGEEEE---TTEEEECCCSSSCCC----------------CCCCSSCCHHHHHHCC-----------CCHHHH
T ss_pred             ecCCCCcceEEEE---CCcEEEeecccccccCccccccc----CCCCcCCcCcCCHHHHhhccccccccccccCCCchhh
Confidence            9999999999996   68899999999998865433211    112246777788887753           44556678


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++...+.+++
T Consensus       203 iwslG~il~ell  214 (343)
T 3dbq_A          203 VWSLGCILYYMT  214 (343)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            998887766554

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.55  E-value=3.7e-15  Score=160.50  Aligned_cols=194  Identities=13%  Similarity=0.092  Sum_probs=131.1

Q ss_pred             ccccccceeEEEEEEe-C---------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-K---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~---------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (765)
                      +.||+|++|.||+|+. .         |+.||||+.++.  +.+..                                  
T Consensus        48 ~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~--~~~~~----------------------------------   91 (352)
T 2jii_A           48 SFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD--GRLFN----------------------------------   91 (352)
T ss_dssp             EEEEEETTEEEEEEEECC-----------CEEEEEEETT--STHHH----------------------------------
T ss_pred             EEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc--chHHH----------------------------------
Confidence            7899999999999998 2         789999998654  22222                                  


Q ss_pred             HHHHHHHHHHHHH--HHHHHHHHhcCCCCccccceeeecc---CCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHH
Q 004254          369 SVLYQEIDYTQEA--ANAELFASNFKDMDYVKVPTIFWEY---TTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA  442 (765)
Q Consensus       369 ~~l~~ElDf~~EA--~Nl~rf~~~f~~~~~V~vP~vy~e~---st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~l  442 (765)
                           |+.+....  .|+.++...+...+...+|.++...   ....+|||||+ |++|.++.... ...++...+...+
T Consensus        92 -----E~~~l~~l~h~niv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~  165 (352)
T 2jii_A           92 -----EQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVA  165 (352)
T ss_dssp             -----HHHHHHHHCCHHHHHHHHHHTTCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHH
T ss_pred             -----HHHHHHHhcccchhhhhhhhccCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHH
Confidence                 22222222  3555555566666667777776532   35569999999 99999976432 2445655555444


Q ss_pred             HH--HHHHHHHhCCccccCCCCCcEEEeecCCC--cEEEEeecceeccChhhHHH-HHHHHHHHhhcCHHHHHHHHHHcC
Q 004254          443 VE--SYLEQILSHGFFHADPHPGNIAVDDVNGG--RLIFYDFGMMGSISPNIREG-LLEAFYGIYEKDADKVLQAMVQMG  517 (765)
Q Consensus       443 i~--~~L~qi~~~GffHaDpHPGNILV~~~~~g--~l~LiDFGlv~~L~~~~r~~-l~~l~~ai~~~D~~~i~~~l~~lG  517 (765)
                      .+  ..+..+|..|++|+|+||.||+++.  ++  +++|+|||++..+....... ..........+++.++++++..-+
T Consensus       166 ~qi~~~L~~LH~~~ivH~Dikp~NIl~~~--~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  243 (352)
T 2jii_A          166 CRLLDALEFLHENEYVHGNVTAENIFVDP--EDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGC  243 (352)
T ss_dssp             HHHHHHHHHHHHTTCBCSCCCGGGEEEET--TEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTC
T ss_pred             HHHHHHHHHHHhCCccCCCCCHHHEEEcC--CCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccC
Confidence            33  3478899999999999999999985  66  89999999998876532110 000000112456778888888766


Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q 004254          518 VLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       518 ~~~~~~D~~~l~~~~~~~l  536 (765)
                      ..++..|++++...+.+++
T Consensus       244 ~~~~~~Di~slG~il~el~  262 (352)
T 2jii_A          244 GPSRRSDLQSLGYCMLKWL  262 (352)
T ss_dssp             CCCHHHHHHHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHH
Confidence            6677789999987766654

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.55  E-value=1.8e-14  Score=156.77  Aligned_cols=182  Identities=16%  Similarity=0.061  Sum_probs=113.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+...+....                                     +      .
T Consensus        26 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-------------------------------------~------~   62 (361)
T 3uc3_A           26 KDIGSGNFGVARLMRDKLTKELVAVKYIERGAAID-------------------------------------E------N   62 (361)
T ss_dssp             EEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSC-------------------------------------H------H
T ss_pred             EEeccCCCEEEEEEEECCCCcEEEEEEEecCcccc-------------------------------------H------H
Confidence            6899999999999999  69999999885432110                                     0      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +.+|+..+..+    . +++|.-..-+....+..++||||++|++|.+.... ...++...+...+.  -..+..+|..|
T Consensus        63 ~~~E~~~l~~l----~-hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~ql~~~L~~LH~~~  136 (361)
T 3uc3_A           63 VQREIINHRSL----R-HPNIVRFKEVILTPTHLAIIMEYASGGELYERICN-AGRFSEDEARFFFQQLLSGVSYCHSMQ  136 (361)
T ss_dssp             HHHHHHHHHHC----C-CTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CCCCCcEEEEEeeCCEEEEEEEeCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            23444444443    2 23332222222335667999999999999886532 23355544444333  23478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC-CCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT-GDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~-~D~~~l~~~~~  533 (765)
                      ++|+|+||.||+++....++++|+|||++..........       ...+++.+++++....+..... .|++++...+.
T Consensus       137 ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~~~-------~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~  209 (361)
T 3uc3_A          137 ICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPK-------STVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLY  209 (361)
T ss_dssp             CCSCCCCGGGEEECSSSSCCEEECCCCCC----------------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHEEEcCCCCceEEEeecCccccccccCCCC-------CCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHH
Confidence            999999999999986333469999999987543322111       1135667778887765544333 68888887766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       210 ell  212 (361)
T 3uc3_A          210 VML  212 (361)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.55  E-value=1e-14  Score=153.49  Aligned_cols=184  Identities=15%  Similarity=0.081  Sum_probs=111.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.++.-...                                 .+      ..-+
T Consensus        38 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~---------------------------------~~------~~~~   78 (310)
T 2wqm_A           38 KKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMD---------------------------------AK------ARAD   78 (310)
T ss_dssp             EEEECC--CEEEEEEETTTCCEEEEEEECTTSSCC---------------------------------HH------HHHH
T ss_pred             EeecCCCCceEEEEEEcCCCceEEEEeeehhhccC---------------------------------HH------HHHH
Confidence            7899999999999998  69999999885421110                                 00      0113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhh---hcCCCHHHHHHHHHH--HHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYAVE--SYLEQ  449 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~---~~g~d~~~ia~~li~--~~L~q  449 (765)
                      +.+|++.+.++    . +++  +++++.  ......+++|||++|++|.++....   ...++...+...+.+  ..+..
T Consensus        79 ~~~E~~~l~~l----~-h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~  151 (310)
T 2wqm_A           79 CIKEIDLLKQL----N-HPN--VIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEH  151 (310)
T ss_dssp             HHHHHHHHHTC----C-CTT--BCCEEEEEEETTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----C-CCC--EeeEEEEEEcCCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHH
Confidence            44555555444    2 233  233332  2345679999999999999865421   223454444443332  34788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..|++|+|+||.||+++.  ++.++|+|||++..++......      ....++..+++++....+..++..|++++.
T Consensus       152 LH~~~i~H~dl~p~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG  223 (310)
T 2wqm_A          152 MHSRRVMHRDIKPANVFITA--TGVVKLGDLGLGRFFSSKTTAA------HSLVGTPYYMSPERIHENGYNFKSDIWSLG  223 (310)
T ss_dssp             HHHTTCCCCCCCGGGEEECT--TSCEEECCC------------------------CCSSCCHHHHTTCCCCHHHHHHHHH
T ss_pred             HhhCCeeCCCCcHHHEEEcC--CCCEEEEeccceeeecCCCccc------cccCCCeeEeChHHhCCCCCCchhhHHHHH
Confidence            99999999999999999985  8899999999988775532211      112345566777777666666677888888


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       224 ~il~~l~  230 (310)
T 2wqm_A          224 CLLYEMA  230 (310)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665554

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.54  E-value=4.7e-15  Score=157.69  Aligned_cols=199  Identities=17%  Similarity=0.175  Sum_probs=127.5

Q ss_pred             CChhhhhc--ccC-cccccccceeEEEEEEe------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 004254          287 APLDDVFE--RFD-VEPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK  357 (765)
Q Consensus       287 ~~~eeiF~--~fd-~~PIgsaSiGQVhrA~l------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~  357 (765)
                      ..+.++|.  .|. .+.||.|++|.||+|++      +|+.||||+.++.-...                          
T Consensus        14 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~--------------------------   67 (327)
T 3lxl_A           14 CQDPTIFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQ--------------------------   67 (327)
T ss_dssp             ---CCBCCGGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHH--------------------------
T ss_pred             cChhhhhchhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHH--------------------------
Confidence            34555654  232 37899999999999984      58999999885432111                          


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc-eeee-ccCCCeEEEEeecCCCChhhhhhhhhcCCCH
Q 004254          358 RDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP-TIFW-EYTTPQILTMEYVPGIKINRIQSLDELGVDR  435 (765)
Q Consensus       358 ~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP-~vy~-e~st~~vLVMEyieG~~L~d~~~l~~~g~d~  435 (765)
                                      .-.+.+|++.+.++     .+++|... .++. +.....++||||++|++|.++.......++.
T Consensus        68 ----------------~~~~~~E~~~l~~l-----~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~  126 (327)
T 3lxl_A           68 ----------------QRDFQREIQILKAL-----HSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDA  126 (327)
T ss_dssp             ----------------HHHHHHHHHHHHTC-----CCTTBCCEEEEEECSSSCEEEEEEECCTTCBHHHHHHHHGGGCCH
T ss_pred             ----------------HHHHHHHHHHHHhc-----CCCceeEEEEEEecCCCceEEEEEeecCCCCHHHHHHhcccCCCH
Confidence                            01234555544444     22333222 1222 1234468999999999999976543344565


Q ss_pred             HHHHHHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004254          436 KRLGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (765)
Q Consensus       436 ~~ia~~li--~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l  513 (765)
                      ..+...+.  ...+..+|..|++|+|+||+||+++.  ++.++|+|||++..++........   .....++..+++++.
T Consensus       127 ~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~  201 (327)
T 3lxl_A          127 SRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVES--EAHVKIADFGLAKLLPLDKDYYVV---REPGQSPIFWYAPES  201 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEE--TTEEEECCGGGCEECCTTCSEEEC---SSCCCSCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECC--CCCEEEcccccceecccCCcccee---eccCCccccccCHHH
Confidence            55554433  34478899999999999999999986  899999999999877543211000   001123444677777


Q ss_pred             HHcCCCCCCCCHHHHHHHHHHHHH
Q 004254          514 VQMGVLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       514 ~~lG~~~~~~D~~~l~~~~~~~l~  537 (765)
                      ..-+..++..|++++...+.+++.
T Consensus       202 ~~~~~~~~~~Di~slG~il~~ll~  225 (327)
T 3lxl_A          202 LSDNIFSRQSDVWSFGVVLYELFT  225 (327)
T ss_dssp             HHHCEEEHHHHHHHHHHHHHHHHT
T ss_pred             hccCCCChHHhHHHHHHHHHHHHh
Confidence            766666677899999877766653

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.54  E-value=9.7e-15  Score=158.14  Aligned_cols=188  Identities=16%  Similarity=0.158  Sum_probs=123.4

Q ss_pred             ccccccceeEEEEEEe-----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||+|++|+||+|+.     +|+.||||+.+......                ..        ...             
T Consensus        60 ~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~----------------~~--------~~~-------------  102 (355)
T 1vzo_A           60 KVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQ----------------KA--------KTT-------------  102 (355)
T ss_dssp             EEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEE----------------EE--------SSG-------------
T ss_pred             EEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhh----------------hh--------hHH-------------
Confidence            6899999999999998     58999999986432100                00        000             


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  451 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~  451 (765)
                       -.+.+|.+.+.++.    ++++|....-+.......+|||||++|++|.++... ...++...+...+  +...+..+|
T Consensus       103 -~~~~~E~~~l~~l~----~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH  176 (355)
T 1vzo_A          103 -EHTRTERQVLEHIR----QSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQ-RERFTEHEVQIYVGEIVLALEHLH  176 (355)
T ss_dssp             -GGCCCHHHHHHHHH----TCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHcc----CCCceeEEEEEEeeCceEEEEeecCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence             01223444444443    233333333333445667999999999999887542 2335555444433  334578899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC--CCCCCCCHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG--VLVPTGDTTAVR  529 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG--~~~~~~D~~~l~  529 (765)
                      ..|++|+|+||.||+++.  +++++|+|||++..+........     .-..++..++++++...+  ..++..|++++.
T Consensus       177 ~~~ivH~Dlkp~NIll~~--~~~~kl~DfG~a~~~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG  249 (355)
T 1vzo_A          177 KLGIIYRDIKLENILLDS--NGHVVLTDFGLSKEFVADETERA-----YDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLG  249 (355)
T ss_dssp             HTTCCCCCCCGGGEEECT--TSCEEESCSSEEEECCGGGGGGG-----CGGGSCCTTCCHHHHTTCC---CTHHHHHHHH
T ss_pred             HCCcccCCCCHHHEEECC--CCcEEEeeCCCCeecccCCCCcc-----cCcccCcCccChhhhcCCCCCCCchhhHHHHH
Confidence            999999999999999985  88999999999988754332111     112467778888887643  245567999998


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       250 ~il~ell  256 (355)
T 1vzo_A          250 VLMYELL  256 (355)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776655

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.54  E-value=3.7e-14  Score=146.84  Aligned_cols=187  Identities=17%  Similarity=0.151  Sum_probs=124.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+......                     . ......              -.
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~---------------------~-~~~~~~--------------~~   54 (283)
T 3bhy_A           11 EELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSS---------------------S-RRGVSR--------------EE   54 (283)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTT---------------------C-SSSBCH--------------HH
T ss_pred             HhhcccCceEEEEEEEcCCCCeeehHHhhhccccc---------------------c-ccchHH--------------HH
Confidence            6899999999999999  59999999885532211                     0 000000              13


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +.+|+..+.++.     +++|.-..-+.......++||||++|++|.++... ...++...+...+.  ...+..+|..|
T Consensus        55 ~~~E~~~l~~l~-----h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~  128 (283)
T 3bhy_A           55 IEREVNILREIR-----HPNIITLHDIFENKTDVVLILELVSGGELFDFLAE-KESLTEDEATQFLKQILDGVHYLHSKR  128 (283)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC-----CCCeeehhheecCCCeEEEEEeecCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            445555555442     23332222233345667999999999999987542 23455554444433  33478899999


Q ss_pred             ccccCCCCCcEEEeecCCC----cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGG----RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g----~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      ++|+|+||+||+++.  ++    +++|+|||++..+......       ....++..++++++...+..++..|++++..
T Consensus       129 i~H~dl~p~Nil~~~--~~~~~~~~kl~dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  199 (283)
T 3bhy_A          129 IAHFDLKPENIMLLD--KNVPNPRIKLIDFGIAHKIEAGNEF-------KNIFGTPEFVAPEIVNYEPLGLEADMWSIGV  199 (283)
T ss_dssp             EECSCCSGGGEEESC--SSSSSCCEEECCCTTCEECC---------------CCCGGGCCHHHHTTCCCCTHHHHHHHHH
T ss_pred             ccCCCCChHHEEEec--CCCCCCceEEEecccceeccCCCcc-------cccCCCcCccCcceecCCCCCcchhhhhHHH
Confidence            999999999999985  44    7999999999987654321       1124677788888887777777789999887


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       200 il~~l~  205 (283)
T 3bhy_A          200 ITYILL  205 (283)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766554

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.54  E-value=9.8e-15  Score=172.21  Aligned_cols=187  Identities=17%  Similarity=0.075  Sum_probs=124.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|+||+||+|+.  +|+.||||+.+.....                ..   .      +.        .      .
T Consensus       347 ~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~----------------~~---~------~~--------~------~  387 (674)
T 3pfq_A          347 MVLGKGSFGKVMLSERKGTDELYAVKILKKDVVI----------------QD---D------DV--------E------C  387 (674)
T ss_dssp             EESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHH----------------HT---T------TT--------H------H
T ss_pred             EEEccCCCEEEEEEEECCCCcEEEEEEEeccccc----------------cH---H------HH--------H------H
Confidence            6899999999999999  5899999998432100                00   0      00        0      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +..|.+.+.    ...+++.|.....+.+.....+|||||++|++|.+..... ..++...+...+  +...+..+|..|
T Consensus       388 ~~~E~~~l~----~~~~~~~i~~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~g  462 (674)
T 3pfq_A          388 TMVEKRVLA----LPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV-GRFKEPHAVFYAAEIAIGLFFLQSKG  462 (674)
T ss_dssp             HHHHHHHHT----CTTCCTTBCCEEEECBCSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHH----hccCCCeEEEEEEEEEeCCEEEEEEeCcCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            122332222    1223343333333333445679999999999998865422 234544443333  334578899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||+|||++.  +|.++|+|||++.........      .....+++.+++++++..+..+...|++++...+.+
T Consensus       463 IiHrDLKp~NILl~~--~g~ikL~DFGla~~~~~~~~~------~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilye  534 (674)
T 3pfq_A          463 IIYRDLKLDNVMLDS--EGHIKIADFGMCKENIWDGVT------TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYE  534 (674)
T ss_dssp             EECCCCCSTTEEECS--SSCEEECCCTTCEECCCTTCC------BCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHH
T ss_pred             eEeccCChhhEEEcC--CCcEEEeecceeeccccCCcc------cccccCCCcccCHhhhcCCCCCccceEechHHHHHH
Confidence            999999999999986  899999999999864322110      011346788999999987777888899999887766


Q ss_pred             HHH
Q 004254          535 FLN  537 (765)
Q Consensus       535 ~l~  537 (765)
                      ++.
T Consensus       535 llt  537 (674)
T 3pfq_A          535 MLA  537 (674)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            653

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.54  E-value=7.2e-15  Score=153.56  Aligned_cols=184  Identities=16%  Similarity=0.076  Sum_probs=118.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                  ....      .
T Consensus         8 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~------~   47 (292)
T 3o0g_A            8 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDE----------------------------------GVPS------S   47 (292)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEESSCSST----------------------------------THHH------H
T ss_pred             eEecCCCCeEEEEEEECCCCceEEEEeeeccCCcC----------------------------------Ccch------H
Confidence            6799999999999999  59999999985432211                                  0001      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +.+|+..+.++    . +++|.-..-+.......+|||||++|..+..+.. ....++...+...+.  -..+..+|..|
T Consensus        48 ~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~~l~~~~~~-~~~~l~~~~~~~~~~ql~~~l~~lH~~~  121 (292)
T 3o0g_A           48 ALREICLLKEL----K-HKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDS-CNGDLDPEIVKSFLFQLLKGLGFCHSRN  121 (292)
T ss_dssp             HHHHHHHHTTC----C-CTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcC----C-CCCEeeEEeEEEeCCEEEEEEecCCCCHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            23344444333    2 2333222222234566799999999854444332 223455554443332  33478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~-~~~~~D~~~l~~~~~  533 (765)
                      ++|+|+||+||+++.  ++.++|+|||++..++......      ....++..++++++...+. .+...|++++...+.
T Consensus       122 ivH~dikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~  193 (292)
T 3o0g_A          122 VLHRDLKPQNLLINR--NGELKLANFGLARAFGIPVRCY------SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFA  193 (292)
T ss_dssp             EECCCCSGGGEEECT--TSCEEECCCTTCEECCSCCSCC------CSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHH
T ss_pred             eecCCCCHHHEEEcC--CCCEEEeecccceecCCccccc------cCCccccCCcChHHHcCCCCcCchHHHHHHHHHHH
Confidence            999999999999986  8899999999998765322110      1123466677888775433 566779999887665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       194 ~l~  196 (292)
T 3o0g_A          194 ELA  196 (292)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            543

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.54  E-value=8.2e-15  Score=151.66  Aligned_cols=186  Identities=17%  Similarity=0.158  Sum_probs=123.1

Q ss_pred             cccC-cccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          294 ERFD-VEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       294 ~~fd-~~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.|. .+.||+|++|+||+|+. +++.||||+.+++....                                        
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~----------------------------------------   52 (279)
T 1qpc_A           13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSP----------------------------------------   52 (279)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCH----------------------------------------
T ss_pred             HhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcccH----------------------------------------
Confidence            3443 36899999999999999 57899999885432110                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeec-cCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHH--HHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAV--ESYL  447 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e-~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li--~~~L  447 (765)
                         -++.+|++.+.++.    + ++  +++++.- .....+++|||++|++|.++..... ..++...+...+.  ...+
T Consensus        53 ---~~~~~E~~~l~~l~----h-~~--i~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l  122 (279)
T 1qpc_A           53 ---DAFLAEANLMKQLQ----H-QR--LVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGM  122 (279)
T ss_dssp             ---HHHHHHHHHHHHCC----C-TT--BCCEEEEECSSSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHhCC----C-cC--cceEEEEEcCCCcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence               02445555555442    2 32  2223321 2355799999999999998754321 2455555444333  3457


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004254          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~  527 (765)
                      ..+|..|++|+|+||+||+++.  ++.++|+|||++..+.......     .........+++++....+..++..|+++
T Consensus       123 ~~lH~~~i~H~dikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  195 (279)
T 1qpc_A          123 AFIEERNYIHRDLRAANILVSD--TLSCKIADFGLARLIEDNEYTA-----REGAKFPIKWTAPEAINYGTFTIKSDVWS  195 (279)
T ss_dssp             HHHHHTTEECSCCSGGGEEECT--TSCEEECCCTTCEECSSSCEEC-----CTTCCCCTTTSCHHHHHHCEECHHHHHHH
T ss_pred             HHHHHCCeeccCCCHhhEEEcC--CCCEEECCCcccccccCccccc-----ccCCCCccCccChhhhccCCCCchhhhHH
Confidence            8899999999999999999985  8899999999998775432110     00012234567777777666666778888


Q ss_pred             HHHHHHHHH
Q 004254          528 VRRTAQFFL  536 (765)
Q Consensus       528 l~~~~~~~l  536 (765)
                      +...+.+++
T Consensus       196 lG~il~el~  204 (279)
T 1qpc_A          196 FGILLTEIV  204 (279)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887665544

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.54  E-value=1.4e-14  Score=151.46  Aligned_cols=184  Identities=13%  Similarity=0.125  Sum_probs=110.8

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +.||+|++|.||+|+..+ .||||+.+......                                  ...      -.|.
T Consensus        30 ~~lG~G~~g~Vy~~~~~~-~vavK~~~~~~~~~----------------------------------~~~------~~~~   68 (289)
T 3og7_A           30 QRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTP----------------------------------QQL------QAFK   68 (289)
T ss_dssp             EEEEECSSEEEEEEESSS-EEEEEEESCSSCCH----------------------------------HHH------HHHH
T ss_pred             eEecCCCCeEEEEEEEcC-ceEEEEEeccCCCH----------------------------------HHH------HHHH
Confidence            789999999999999865 49999985432211                                  000      1234


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeee-ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCc
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGF  455 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~-e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~Gf  455 (765)
                      +|++.+.++    . ++++  ..++. ......++||||++|++|.+........++...+...+.  -..+..+|..|+
T Consensus        69 ~E~~~l~~l----~-h~~i--v~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i  141 (289)
T 3og7_A           69 NEVGVLRKT----R-HVNI--LLFMGYSTAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSI  141 (289)
T ss_dssp             HHHHHHTTC----C-CTTB--CCEEEEECSSSCEEEEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhC----C-CCcE--EEEEeeccCCccEEEEEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            444444332    2 2333  23332 234557999999999999887644444455555444433  334788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCCHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~---lG~~~~~~D~~~l~~~~  532 (765)
                      +|+|+||+||+++.  +++++|+|||++...+.......    .....+++.++++++..   .+..++..|++++...+
T Consensus       142 ~H~Dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il  215 (289)
T 3og7_A          142 IHRDLKSNNIFLHE--DNTVKIGDFGLATEKSRWSGSHQ----FEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVL  215 (289)
T ss_dssp             CCSCCCGGGEEEET--TTEEEECCCC----------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHH
T ss_pred             ccccCccceEEECC--CCCEEEccceecccccccccccc----ccccCCCccccCchhhcccCCCCCCcccchHHHHHHH
Confidence            99999999999986  88999999999987654222111    11123566777888775   33344467888888766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       216 ~el~  219 (289)
T 3og7_A          216 YELM  219 (289)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.54  E-value=2.5e-14  Score=164.61  Aligned_cols=146  Identities=14%  Similarity=0.126  Sum_probs=100.5

Q ss_pred             cCcccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          296 FDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       296 fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      +..+.||+|++|+||+|+..|+.|++|...+.....                             ..+.++    . ..-
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~~~~~~~~k~~~~~~~~~-----------------------------~~~~~~----~-~~~  384 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSYLDFDVIIKERVKKGYRD-----------------------------ERLDEN----I-RKS  384 (540)
T ss_dssp             ---------CCEEEEEEECSSCEEEEEEECCCTTSC-----------------------------HHHHHH----H-HHH
T ss_pred             CCCCEEeeCCCEEEEEEEECCCeEEEEEEecccccc-----------------------------hhhhhH----H-HHH
Confidence            445789999999999998899999999885532211                             000010    0 112


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCc
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGF  455 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~Gf  455 (765)
                      .+.+|++.+.++.     +++|..|..|.......+|||||++|++|.++...      ...++..++ ..+..+|..|+
T Consensus       385 ~~~~E~~il~~l~-----h~nIv~~~~~~~~~~~~~lVmE~~~ggsL~~~l~~------~~~i~~qi~-~aL~~LH~~gI  452 (540)
T 3en9_A          385 RTAREARYLALVK-----DFGIPAPYIFDVDLDNKRIMMSYINGKLAKDVIED------NLDIAYKIG-EIVGKLHKNDV  452 (540)
T ss_dssp             HHHHHHHHHHHGG-----GGTCCCCCEEEEETTTTEEEEECCCSEEHHHHSTT------CTHHHHHHH-HHHHHHHHTTE
T ss_pred             HHHHHHHHHHhcC-----CCCcCceEEEEEeCCccEEEEECCCCCCHHHHHHH------HHHHHHHHH-HHHHHHHHCcC
Confidence            4567777777763     36677778888777888999999999999886532      223333333 44788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR  491 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r  491 (765)
                      +|+|+||+||+++   + +++|+|||+++.+++...
T Consensus       453 iHrDiKp~NILl~---~-~~kL~DFGla~~~~~~~~  484 (540)
T 3en9_A          453 IHNDLTTSNFIFD---K-DLYIIDFGLGKISNLDED  484 (540)
T ss_dssp             ECTTCCTTSEEES---S-SEEECCCTTCEECCCHHH
T ss_pred             ccCCCCHHHEEEC---C-eEEEEECccCEECCCccc
Confidence            9999999999997   3 999999999999877543

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.54  E-value=8.5e-15  Score=152.92  Aligned_cols=184  Identities=16%  Similarity=0.108  Sum_probs=117.4

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|++|+||+|+. +|+.||||+.+......                          ...        .      .+
T Consensus         8 ~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~--------------------------~~~--------~------~~   47 (288)
T 1ob3_A            8 EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDE--------------------------GIP--------S------TT   47 (288)
T ss_dssp             EEEEEETTEEEEEEEETTSCEEEEEEECCSSGGG--------------------------CCC--------H------HH
T ss_pred             hhcccCCCEEEEEEEcCCCCEEEEEEEecccccc--------------------------ccc--------h------hH
Confidence            6899999999999999 69999999885432211                          000        0      12


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~Gf  455 (765)
                      .+|++.+.++    . +++|.-..-+.......++||||++| ++.++......+.+...+...+.  -..+..+|..|+
T Consensus        48 ~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  121 (288)
T 1ob3_A           48 IREISILKEL----K-HSNIVKLYDVIHTKKRLVLVFEHLDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRV  121 (288)
T ss_dssp             HHHHHGGGGC----C-CTTBCCEEEEEECSSCEEEEEECCSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhc----C-CCCEeeeeeEEccCCeEEEEEEecCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            2344333322    2 23332222222335667999999998 67665543334455554443332  334788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~~~  534 (765)
                      +|+|+||+||+++.  ++.++|+|||++..+.......      ....++..++++++... ...++..|++++...+.+
T Consensus       122 ~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~  193 (288)
T 1ob3_A          122 LHRDLKPQNLLINR--EGELKIADFGLARAFGIPVRKY------THEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAE  193 (288)
T ss_dssp             CCSCCCGGGEEECT--TSCEEECCTTHHHHHCC---------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHH
T ss_pred             ecCCCCHHHEEEcC--CCCEEEeECccccccCcccccc------ccccccccccCchheeCCCCCCcHHHHHHHHHHHHH
Confidence            99999999999985  8899999999998765432211      11134666778887753 335667799999877665


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       194 l~  195 (288)
T 1ob3_A          194 MV  195 (288)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.54  E-value=6.5e-15  Score=154.74  Aligned_cols=187  Identities=16%  Similarity=0.098  Sum_probs=121.6

Q ss_pred             ccccccceeEEEEEEe-------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||.|++|.||+|+.       +|+.||||+.+++....                                        
T Consensus        33 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------------   72 (316)
T 2xir_A           33 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS----------------------------------------   72 (316)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHH----------------------------------------
T ss_pred             eEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcH----------------------------------------
Confidence            6899999999999984       36899999986543211                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcC---------------CCH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG---------------VDR  435 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g---------------~d~  435 (765)
                       ..-.+.+|++.+.++.    ++++| .+-..+.......+++|||++|++|.++.......               ++.
T Consensus        73 -~~~~~~~E~~~l~~l~----~hp~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~  147 (316)
T 2xir_A           73 -EHRALMSELKILIHIG----HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTL  147 (316)
T ss_dssp             -HHHHHHHHHHHHHHHC----CCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEH
T ss_pred             -HHHHHHHHHHHHHhcc----cCCCeeeEEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCH
Confidence             0113445565555552    22332 22222222233479999999999999875432211               333


Q ss_pred             HHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004254          436 KRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (765)
Q Consensus       436 ~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l  513 (765)
                      ..+...+  +-..+..+|..|++|+|+||+||+++.  ++.++|+|||++..+........    .....++..++++++
T Consensus       148 ~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~t~~y~aPE~  221 (316)
T 2xir_A          148 EHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSE--KNVVKICDFGLARDIYKDPDYVR----KGDARLPLKWMAPET  221 (316)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECG--GGCEEECCCGGGSCTTTCTTSEE----ETTEEECGGGCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccccCccceEEECC--CCCEEECCCccccccccCcccee----ccCCCcceeecCchh
Confidence            3333333  234478899999999999999999986  78999999999987654321000    011123456777887


Q ss_pred             HHcCCCCCCCCHHHHHHHHHHHH
Q 004254          514 VQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       514 ~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ...+..++..|++++...+.+++
T Consensus       222 ~~~~~~~~~~Di~slG~il~~l~  244 (316)
T 2xir_A          222 IFDRVYTIQSDVWSFGVLLWEIF  244 (316)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             hccccccchhHHHHHHHHHHHHH
Confidence            77676777789999887665554

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.54  E-value=1.4e-14  Score=153.47  Aligned_cols=184  Identities=16%  Similarity=0.094  Sum_probs=118.0

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +.||.|++|.||+|+.+|+.||||+........                                             +.
T Consensus        43 ~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~---------------------------------------------~~   77 (337)
T 3mdy_A           43 KQIGKGRYGEVWMGKWRGEKVAVKVFFTTEEAS---------------------------------------------WF   77 (337)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEEEEGGGHHH---------------------------------------------HH
T ss_pred             eEeecCCCeEEEEEEECCceEEEEEEeccccch---------------------------------------------hh
Confidence            789999999999999999999999874321111                                             11


Q ss_pred             HHHHHHHHHHHhcCCCCcc-ccceeeeccC---CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004254          379 QEAANAELFASNFKDMDYV-KVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~s---t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~  452 (765)
                      .|....   ......+++| .+-..+....   ...++||||++|++|.++..  ...++...+...+.+  ..+..+|.
T Consensus        78 ~e~~~~---~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~--~~~~~~~~~~~i~~~i~~~l~~lH~  152 (337)
T 3mdy_A           78 RETEIY---QTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLK--STTLDAKSMLKLAYSSVSGLCHLHT  152 (337)
T ss_dssp             HHHHHH---TSTTCCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHHHHHH--HCCBCHHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHH---HHHhhcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            111111   1111123332 2222222211   45699999999999998753  334555554444333  34788888


Q ss_pred             C--------CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC--
Q 004254          453 H--------GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT--  522 (765)
Q Consensus       453 ~--------GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~--  522 (765)
                      .        |++|+|+||.||+++.  ++.++|+|||++..+........  .-.....++..++++++..-+.....  
T Consensus       153 ~~~~~~~~~~ivH~Dikp~Nill~~--~~~~kl~Dfg~a~~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~  228 (337)
T 3mdy_A          153 EIFSTQGKPAIAHRDLKSKNILVKK--NGTCCIADLGLAVKFISDTNEVD--IPPNTRVGTKRYMPPEVLDESLNRNHFQ  228 (337)
T ss_dssp             CBCSTTCBCCEECSCCCGGGEEECT--TSCEEECCCTTCEECC-----------CCSSCSCGGGCCHHHHTTCCCTTCTH
T ss_pred             hhhhhccCCCEEecccchHHEEECC--CCCEEEEeCCCceeecccccccc--CCCCCCccCcceeChhhcccccCCcccc
Confidence            8        9999999999999985  88999999999988765432211  00112246778889998876655555  


Q ss_pred             ----CCHHHHHHHHHHHH
Q 004254          523 ----GDTTAVRRTAQFFL  536 (765)
Q Consensus       523 ----~D~~~l~~~~~~~l  536 (765)
                          .|++++...+.+++
T Consensus       229 ~~~~~DiwslG~il~el~  246 (337)
T 3mdy_A          229 SYIMADMYSFGLILWEVA  246 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             CccccchHHHHHHHHHHH
Confidence                68888887766554

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.54  E-value=3.5e-15  Score=159.01  Aligned_cols=124  Identities=13%  Similarity=0.159  Sum_probs=88.1

Q ss_pred             CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeeccee
Q 004254          407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  484 (765)
Q Consensus       407 st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~  484 (765)
                      ....++||||++|++|.+........++...+...+  +...+..+|..|++|+|+||+||+++.  +++++|+|||++.
T Consensus        86 ~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~--~~~~kl~Dfg~a~  163 (325)
T 3kex_A           86 GSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKS--PSQVQVADFGVAD  163 (325)
T ss_dssp             BSSEEEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESS--SSCEEECSCSGGG
T ss_pred             CCccEEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECC--CCeEEECCCCccc
Confidence            456789999999999988654332234433333332  334588899999999999999999985  8899999999999


Q ss_pred             ccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          485 SISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       485 ~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      .+.........    ....+...+++++....+..++..|++++...+.+++
T Consensus       164 ~~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~  211 (325)
T 3kex_A          164 LLPPDDKQLLY----SEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELM  211 (325)
T ss_dssp             GSCCCTTCCC---------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             ccCcccccccc----cCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHH
Confidence            87654322111    1123455678888888777777889999987766554

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.54  E-value=1.5e-14  Score=149.45  Aligned_cols=179  Identities=16%  Similarity=0.135  Sum_probs=121.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|+||+|+.  +|+.||||+.+....                                              .
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----------------------------------------------~   50 (284)
T 2a19_B           17 ELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNE----------------------------------------------K   50 (284)
T ss_dssp             EEEECSSSCCEEEEEETTTCCEEEEEEEECCSG----------------------------------------------G
T ss_pred             eeeccCCceEEEEEEEcCCCeEEEEEEeccccH----------------------------------------------H
Confidence            7899999999999999  599999998854321                                              1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec---------------cCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWE---------------YTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGR  440 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e---------------~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~  440 (765)
                      +.+|++.+.++    .+..-+.+..++..               .....++||||++|++|.++.... ...++...+..
T Consensus        51 ~~~e~~~l~~l----~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~  126 (284)
T 2a19_B           51 AEREVKALAKL----DHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALE  126 (284)
T ss_dssp             GHHHHHHHHHC----CCTTBCCEEEEEEEEEEC---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHH
T ss_pred             HHHHHHHHHhC----CCCCEEEEeeeEeccccCcccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHH
Confidence            12333333333    22222222222211               123368999999999999976432 23455444433


Q ss_pred             HHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004254          441 YAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  518 (765)
Q Consensus       441 ~li--~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~  518 (765)
                      .+.  ...+..+|..|++|+|+||+||++++  ++.++|+|||++..+......       ....+++.+++++...-+.
T Consensus       127 i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~  197 (284)
T 2a19_B          127 LFEQITKGVDYIHSKKLINRDLKPSNIFLVD--TKQVKIGDFGLVTSLKNDGKR-------TRSKGTLRYMSPEQISSQD  197 (284)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEEEE--TTEEEECCCTTCEESSCCSCC-------CCCCSCCTTSCHHHHHCSC
T ss_pred             HHHHHHHHHHHHHhCCeeeccCCHHHEEEcC--CCCEEECcchhheeccccccc-------cccCCcccccChhhhccCC
Confidence            332  33478899999999999999999987  889999999999887653211       1123566778888887776


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 004254          519 LVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       519 ~~~~~D~~~l~~~~~~~l  536 (765)
                      .++..|++++...+.+++
T Consensus       198 ~~~~~Di~slG~il~~l~  215 (284)
T 2a19_B          198 YGKEVDLYALGLILAELL  215 (284)
T ss_dssp             CCTHHHHHHHHHHHHHHH
T ss_pred             CcchhhhHHHHHHHHHHH
Confidence            777789999887766554

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.54  E-value=1.6e-14  Score=168.60  Aligned_cols=185  Identities=12%  Similarity=0.101  Sum_probs=122.5

Q ss_pred             cccccceeEEEEEEe----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       300 PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .||.|+||.||+|.+    ++..||||+.+++.....                                         .-
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~-----------------------------------------~~  381 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKAD-----------------------------------------TE  381 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTT-----------------------------------------HH
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHH-----------------------------------------HH
Confidence            699999999999987    357899999866532210                                         01


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~  453 (765)
                      +|.+|++.+.++    .+..-|.+-.++.  ....+|||||++|++|.++.......++...+...+.+  ..+..+|..
T Consensus       382 ~~~~E~~il~~l----~hpniv~l~~~~~--~~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~  455 (613)
T 2ozo_A          382 EMMREAQIMHQL----DNPYIVRLIGVCQ--AEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK  455 (613)
T ss_dssp             HHHHHHHHHTTC----CCTTBCCEEEEEE--SSSEEEEEECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC----CCCCEeeEEEEec--cCCeEEEEEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            345565555443    2222222222222  35679999999999999876433334555555544433  448889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||.|||++.  ++.++|+|||++..+.........   .........+++++....+..+...|++++...+.
T Consensus       456 ~iiHrDlkp~NILl~~--~~~vkL~DFGla~~~~~~~~~~~~---~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~  530 (613)
T 2ozo_A          456 NFVHRNLAARNVLLVN--RHYAKISDFGLSKALGADDSYYTA---RSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMW  530 (613)
T ss_dssp             TCCCSCCSGGGEEEEE--TTEEEECCCSTTTTCC-----------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             CEEcCcCCHHHEEEcC--CCcEEEeeccCcccccCCCceeee---ccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHH
Confidence            9999999999999987  889999999999987654321110   11112235678888888777778889999987766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       531 ell  533 (613)
T 2ozo_A          531 EAL  533 (613)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.53  E-value=1.1e-14  Score=153.72  Aligned_cols=186  Identities=16%  Similarity=0.089  Sum_probs=121.2

Q ss_pred             ccccccceeEEEEEEeC-------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||.|++|.||+|+..       ++.||||+.+......                                        
T Consensus        31 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------------   70 (322)
T 1p4o_A           31 RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR----------------------------------------   70 (322)
T ss_dssp             EEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHH----------------------------------------
T ss_pred             eEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHH----------------------------------------
Confidence            68999999999999863       6889999875322110                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------cCCCHHHHHHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------LGVDRKRLGRYA  442 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------~g~d~~~ia~~l  442 (765)
                       ....+.+|++.+..+    . +++|.-..-+.......++||||++|++|.++.....         ...+...+...+
T Consensus        71 -~~~~~~~E~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~  144 (322)
T 1p4o_A           71 -ERIEFLNEASVMKEF----N-CHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMA  144 (322)
T ss_dssp             -HHHHHHHHHHHGGGC----C-CTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhc----C-CCCEeeeEEEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHH
Confidence             112344555544433    2 2333222222233456799999999999998654221         123444444333


Q ss_pred             --HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004254          443 --VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (765)
Q Consensus       443 --i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~  520 (765)
                        +...+..+|..|++|+|+||.||+++.  ++.++|+|||++..+........    .....+++.+++++....+..+
T Consensus       145 ~qi~~~l~~lH~~~i~H~dikp~NIli~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~  218 (322)
T 1p4o_A          145 GEIADGMAYLNANKFVHRDLAARNCMVAE--DFTVKIGDFGMTRDIYETDYYRK----GGKGLLPVRWMSPESLKDGVFT  218 (322)
T ss_dssp             HHHHHHHHHHHHTTCBCSCCSGGGEEECT--TCCEEECCTTCCCGGGGGGCEEG----GGSSEECGGGCCHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHCCCccCCCccceEEEcC--CCeEEECcCcccccccccccccc----ccCCCCCCCccChhhhccCCCC
Confidence              234478899999999999999999985  88999999999987654321000    0011234557778877767677


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004254          521 PTGDTTAVRRTAQFFL  536 (765)
Q Consensus       521 ~~~D~~~l~~~~~~~l  536 (765)
                      +..|++++...+.+++
T Consensus       219 ~~~Di~slG~il~el~  234 (322)
T 1p4o_A          219 TYSDVWSFGVVLWEIA  234 (322)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHH
Confidence            7789999887766554

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.53  E-value=2.2e-14  Score=148.67  Aligned_cols=185  Identities=12%  Similarity=0.071  Sum_probs=122.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+..+.....                                 .+       .-.
T Consensus        12 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------------------------~~-------~~~   51 (284)
T 3kk8_A           12 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSA---------------------------------RD-------FQK   51 (284)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCH---------------------------------HH-------HHH
T ss_pred             hhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCH---------------------------------HH-------HHH
Confidence            6899999999999998  59999999985432110                                 00       012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +.+|++.+.++.     +++|.-..-+....+..+++|||++|++|.+.... ...++...+...+.  -..+..+|..|
T Consensus        52 ~~~e~~~l~~l~-----h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~  125 (284)
T 3kk8_A           52 LEREARICRKLQ-----HPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVA-REFYSEADASHCIQQILESIAYCHSNG  125 (284)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcC-----CCCcCeEEEEEEcCCEEEEEEecCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            345555555442     23332222222344566999999999999775432 22344444443332  33478899999


Q ss_pred             ccccCCCCCcEEEeecC-CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVN-GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~-~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|+||.||+++... ++.++|+|||++.........       ....+++.++++++...+..++..|++++...+.
T Consensus       126 i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~  198 (284)
T 3kk8_A          126 IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAW-------HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILY  198 (284)
T ss_dssp             EECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCBC-------CCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHH
T ss_pred             cCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCccc-------cCCCCCcCCcCchhhcCCCCCcccchHHHHHHHH
Confidence            99999999999997511 235999999999877653321       1124577788888887776777789999887766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       199 ~l~  201 (284)
T 3kk8_A          199 ILL  201 (284)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.53  E-value=9.7e-15  Score=161.26  Aligned_cols=190  Identities=12%  Similarity=0.078  Sum_probs=119.1

Q ss_pred             hhhhcccCc--ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHH
Q 004254          290 DDVFERFDV--EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (765)
Q Consensus       290 eeiF~~fd~--~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~  365 (765)
                      ..++..+..  +.||.|++|.||+|+.  +|+.||||+.+...                                     
T Consensus        57 ~~~~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-------------------------------------   99 (400)
T 1nxk_A           57 NAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCP-------------------------------------   99 (400)
T ss_dssp             SCGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSH-------------------------------------
T ss_pred             CcccccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcch-------------------------------------
Confidence            345555543  5799999999999999  59999999874210                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-cccceeeecc---CCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHH
Q 004254          366 ECASVLYQEIDYTQEAANAELFASNFKDMDY-VKVPTIFWEY---TTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGR  440 (765)
Q Consensus       366 E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~-V~vP~vy~e~---st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~  440 (765)
                                .+.+|...+.+.   . ++++ +.+-.++...   ....+|||||++|++|.++..... ..++...+..
T Consensus       100 ----------~~~~E~~~~~~~---~-~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~  165 (400)
T 1nxk_A          100 ----------KARREVELHWRA---S-QCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASE  165 (400)
T ss_dssp             ----------HHHHHHHHHHHH---T-TSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHCC---CCBHHHHHH
T ss_pred             ----------hHHHHHHHHHHh---c-CCCCcceEeEEEeecccCCcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHH
Confidence                      011222222111   1 2232 2333333221   234689999999999988754321 2345544444


Q ss_pred             HHHH--HHHHHHHhCCccccCCCCCcEEEeecC-CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC
Q 004254          441 YAVE--SYLEQILSHGFFHADPHPGNIAVDDVN-GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG  517 (765)
Q Consensus       441 ~li~--~~L~qi~~~GffHaDpHPGNILV~~~~-~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG  517 (765)
                      .+.+  ..+..+|..|++|+|+||+||+++... ++.++|+|||++.........       ....++..++++++...+
T Consensus       166 i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~  238 (400)
T 1nxk_A          166 IMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL-------TTPCYTPYYVAPEVLGPE  238 (400)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC------------------CTTCCGGGSCCC
T ss_pred             HHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEecccccccCCCCcc-------ccCCCCCCccCHhhcCCC
Confidence            3333  347889999999999999999998421 578999999999987653221       112235567777777666


Q ss_pred             CCCCCCCHHHHHHHHHHHHH
Q 004254          518 VLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       518 ~~~~~~D~~~l~~~~~~~l~  537 (765)
                      ..+...|++++...+.+++.
T Consensus       239 ~~~~~~DiwslG~il~ell~  258 (400)
T 1nxk_A          239 KYDKSCDMWSLGVIMYILLC  258 (400)
T ss_dssp             CSSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccHHHHHHHHHHHHh
Confidence            66777899999887766653

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.53  E-value=4.2e-14  Score=150.52  Aligned_cols=185  Identities=12%  Similarity=0.071  Sum_probs=121.9

Q ss_pred             ccccccceeEEEEEEe--CC-eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KG-EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G-~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      +.||+|++|.||+|+.  +| +.||||+.+..-.                                     ...      
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~-------------------------------------~~~------   61 (355)
T 2eu9_A           25 GNLGEGTFGKVVECLDHARGKSQVALKIIRNVGK-------------------------------------YRE------   61 (355)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEECSCHH-------------------------------------HHH------
T ss_pred             EEeeccCCeEEEEEEecCCCceEEEEEEEccccc-------------------------------------chh------
Confidence            6899999999999998  34 7999999853210                                     011      


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcccccee--eeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTI--FWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQIL  451 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~v--y~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~  451 (765)
                      .+.+|++.+.++.+.... ....+...  +.......+|||||++|..+..+.......++...+...+.  ...+..+|
T Consensus        62 ~~~~E~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH  140 (355)
T 2eu9_A           62 AARLEINVLKKIKEKDKE-NKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH  140 (355)
T ss_dssp             HHHHHHHHHHHHHHHCTT-SCSCBCCEEEEEEETTEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCC-CceeEEEeeeeeeeCCeEEEEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            233455555555543221 11222222  22445677999999966555444332223455555444433  34488899


Q ss_pred             hCCccccCCCCCcEEEee-----------------cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDD-----------------VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMV  514 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~-----------------~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~  514 (765)
                      ..|++|+|+||+||++..                 ..++.++|+|||++........         ...++..++++++.
T Consensus       141 ~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~---------~~~gt~~y~aPE~~  211 (355)
T 2eu9_A          141 ENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHHT---------TIVATRHYRPPEVI  211 (355)
T ss_dssp             TTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSCCC---------SSCSCGGGCCHHHH
T ss_pred             HCCcccCCCCHHHEEEecccccccccccccccccccCCCcEEEeecCcccccccccc---------CCcCCCcccCCeee
Confidence            999999999999999932                 1368899999999987654321         12467778888888


Q ss_pred             HcCCCCCCCCHHHHHHHHHHHH
Q 004254          515 QMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       515 ~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      .-+..++..|++++...+.+++
T Consensus       212 ~~~~~~~~~Di~slG~il~el~  233 (355)
T 2eu9_A          212 LELGWAQPCDVWSIGCILFEYY  233 (355)
T ss_dssp             TTCCCCTHHHHHHHHHHHHHHH
T ss_pred             ecCCCCCccchHHHHHHHHHHH
Confidence            7666677789999987766554

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.53  E-value=1e-14  Score=152.06  Aligned_cols=185  Identities=13%  Similarity=0.118  Sum_probs=122.3

Q ss_pred             ccccccceeEEEEEEe----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      ..||+|++|+||+|+.    +|+.||||+.++.....                                   .      .
T Consensus        16 ~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~------~   54 (287)
T 1u59_A           16 IELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKA-----------------------------------D------T   54 (287)
T ss_dssp             EEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHH-----------------------------------H------H
T ss_pred             ccccccCceeEEEeEeccCCCcceEEEEecCCccchh-----------------------------------H------H
Confidence            4899999999999986    47899999986642211                                   0      0


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~  451 (765)
                      -.+.+|++.+.++    . +++| .+-.++  .....++||||++|++|.++.......++...+...+..  ..+..+|
T Consensus        55 ~~~~~E~~~l~~l----~-h~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH  127 (287)
T 1u59_A           55 EEMMREAQIMHQL----D-NPYIVRLIGVC--QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE  127 (287)
T ss_dssp             HHHHHHHHHHHHC----C-CTTBCCEEEEE--ESSSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC----C-CCCEeEEEEEe--cCCCcEEEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHH
Confidence            1234455555444    2 2332 222222  245679999999999999876433334555555444333  3478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..|++|+|+||+||+++.  ++.++|+|||++..+........   ......++..+++++....+..++..|++++...
T Consensus       128 ~~~i~H~dlkp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  202 (287)
T 1u59_A          128 EKNFVHRDLAARNVLLVN--RHYAKISDFGLSKALGADDSYYT---ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVT  202 (287)
T ss_dssp             HTTEECCCCSGGGEEEEE--TTEEEECCCTTCEECTTCSCEEC---CCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHH
T ss_pred             HCCEeeCCCchheEEEcC--CCCEEECcccceeeeccCcceee---ccccccccccccCHHHhccCCCCchhhHHHHHHH
Confidence            999999999999999986  88999999999987754321000   0000122455777777766666667788888876


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       203 l~ell  207 (287)
T 1u59_A          203 MWEAL  207 (287)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65554

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.53  E-value=2.3e-14  Score=152.88  Aligned_cols=184  Identities=16%  Similarity=0.139  Sum_probs=117.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+..+.....                                  ...+      .
T Consensus        31 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~------~   70 (331)
T 4aaa_A           31 GLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDK----------------------------------MVKK------I   70 (331)
T ss_dssp             EEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCH----------------------------------HHHH------H
T ss_pred             eEEeecCCEEEEEEEECCCCceEEEEEEecCCCch----------------------------------HHHH------H
Confidence            7899999999999999  59999999874432111                                  0111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|++.+.++.     +++|.-..-+.......++||||++|..+.++... ..+++...+...+.+  ..+..+|..|
T Consensus        71 ~~~E~~~l~~l~-----h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~  144 (331)
T 4aaa_A           71 AMREIKLLKQLR-----HENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELF-PNGLDYQVVQKYLFQIINGIGFCHSHN  144 (331)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHS-TTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhCC-----CCCEeeEEEEeecCCEEEEEEecCCcchHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            334554444442     23332222222335567999999999988886432 234555554444333  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|+||+||+++.  ++.++|+|||++..+......      .....++..++++++...+ ..++..|++++...+.
T Consensus       145 ivH~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~  216 (331)
T 4aaa_A          145 IIHRDIKPENILVSQ--SGVVKLCDFGFARTLAAPGEV------YDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVT  216 (331)
T ss_dssp             CCCCCCCGGGEEECT--TSCEEECCCTTC------------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHH
T ss_pred             EEccCcChheEEEcC--CCcEEEEeCCCceeecCCccc------cCCCcCCccccCcccccCCCCcchHHHHHHHHHHHH
Confidence            999999999999985  889999999999877543221      1112356667778877543 4556679999887766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       217 ~l~  219 (331)
T 4aaa_A          217 EMF  219 (331)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.53  E-value=2.6e-14  Score=159.14  Aligned_cols=190  Identities=12%  Similarity=0.079  Sum_probs=119.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+.......                                        ..-.
T Consensus        32 ~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~----------------------------------------~~~~   71 (432)
T 3n9x_A           32 HLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLI----------------------------------------DCKR   71 (432)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHH----------------------------------------HHHH
T ss_pred             EEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChH----------------------------------------HHHH
Confidence            6899999999999998  689999998854322110                                        0112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC----CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT----TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQI  450 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s----t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi  450 (765)
                      +.+|++.+.++.    +..-+.+-.++....    ...+|||||++| .|.++... ...++...+...+.  -..+..+
T Consensus        72 ~~~E~~~l~~l~----h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~-~~~l~~~~~~~i~~qil~aL~~L  145 (432)
T 3n9x_A           72 ILREITILNRLK----SDYIIRLYDLIIPDDLLKFDELYIVLEIADS-DLKKLFKT-PIFLTEEHIKTILYNLLLGENFI  145 (432)
T ss_dssp             HHHHHHHHHHCC----CTTBCCEEEECCCSCTTTCCCEEEEEECCSE-EHHHHHHS-SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC----CCCcceEEEEEecCCCCcCCeEEEEEecCCc-CHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHH
Confidence            345555555442    222222222222211    457999999987 77765432 22345444444333  3447889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHH----------------HHHHHhhcCHHHHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLE----------------AFYGIYEKDADKVLQAMV  514 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~----------------l~~ai~~~D~~~i~~~l~  514 (765)
                      |..|++|+|+||+||+++.  ++.++|+|||++..+..........                -...-..++..++++++.
T Consensus       146 H~~givHrDlkp~NILl~~--~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~  223 (432)
T 3n9x_A          146 HESGIIHRDLKPANCLLNQ--DCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELI  223 (432)
T ss_dssp             HHTTEECCCCCGGGEEECT--TCCEEECCCTTCEEC-------------------------------CCCCCTTCCHHHH
T ss_pred             HHCCCCCCCCCHHHeEECC--CCCEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHH
Confidence            9999999999999999986  8899999999999886543221110                011223456678888876


Q ss_pred             -HcCCCCCCCCHHHHHHHHHHHH
Q 004254          515 -QMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       515 -~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                       ..+..++..|++++.-.+.+++
T Consensus       224 ~~~~~~~~~~DiwSlG~il~ell  246 (432)
T 3n9x_A          224 LLQENYTKSIDIWSTGCIFAELL  246 (432)
T ss_dssp             TTCSCCCTHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCcccccchHHHHHHHHH
Confidence             3445677789999998877776

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.53  E-value=1.7e-14  Score=153.27  Aligned_cols=187  Identities=16%  Similarity=0.153  Sum_probs=124.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.++.....-                      ......              -.
T Consensus        18 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~----------------------~~~~~~--------------~~   61 (321)
T 2a2a_A           18 EELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRAS----------------------RRGVSR--------------EE   61 (321)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSC----------------------SSSBCH--------------HH
T ss_pred             eEeeecCCEEEEEEEECCCCeEEEEEEEeccccccc----------------------ccchhH--------------HH
Confidence            6899999999999998  599999999865432110                      000000              12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|+..+..+.     +++|.-..-+.......++||||++|++|.++... ...++...+...+  +-..+..+|..|
T Consensus        62 ~~~E~~~l~~l~-----h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~aL~~lH~~~  135 (321)
T 2a2a_A           62 IEREVSILRQVL-----HHNVITLHDVYENRTDVVLILELVSGGELFDFLAQ-KESLSEEEATSFIKQILDGVNYLHTKK  135 (321)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHT-CSCEEHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC-----CCCcceEEEEEecCCEEEEEEEcCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            345555554442     23332222223345567999999999999987532 2233444443333  233478899999


Q ss_pred             ccccCCCCCcEEEeecCCC----cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGG----RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g----~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      ++|+|+||+||+++.  ++    .++|+|||++..+......       .-..+++.++++++...+..++..|++++..
T Consensus       136 ivH~dikp~NIl~~~--~~~~~~~~kl~Dfg~~~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~  206 (321)
T 2a2a_A          136 IAHFDLKPENIMLLD--KNIPIPHIKLIDFGLAHEIEDGVEF-------KNIFGTPEFVAPEIVNYEPLGLEADMWSIGV  206 (321)
T ss_dssp             EECCCCSGGGEEESC--TTSSSCCEEECCCTTCEECCTTCCC-------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHH
T ss_pred             eecCCCChHHEEEec--CCCCcCCEEEccCccceecCccccc-------cccCCCCCccCcccccCCCCCCccccHHHHH
Confidence            999999999999985  45    7999999999887653210       1123577788888887777777789999987


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       207 il~~l~  212 (321)
T 2a2a_A          207 ITYILL  212 (321)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766554

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.53  E-value=3.1e-15  Score=155.46  Aligned_cols=186  Identities=19%  Similarity=0.182  Sum_probs=115.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|+.  +|+.||||+.+..-.     +                                .+      .
T Consensus        12 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-----~--------------------------------~~------~   48 (303)
T 1zy4_A           12 AVLGQGAFGQVVKARNALDSRYYAIKKIRHTEE-----K--------------------------------LS------T   48 (303)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEEEHH-----H--------------------------------HH------H
T ss_pred             heeccCCcEEEEEEEEcCCCeEEEEEEEeccHH-----H--------------------------------HH------H
Confidence            6899999999999998  699999998743110     0                                01      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee---------------ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW---------------EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY  441 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~---------------e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~  441 (765)
                      +.+|+..+.++    . +++  +.+++.               +.....++||||++|++|.++........+...+...
T Consensus        49 ~~~E~~~l~~l----~-h~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i  121 (303)
T 1zy4_A           49 ILSEVMLLASL----N-HQY--VVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRL  121 (303)
T ss_dssp             HHHHHHHHTTC----C-CTT--BCCEEEEEEECCCCCC------CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHH
T ss_pred             HHHHHHHHHhc----C-chH--HHHHHHHHHhhcchhhhhcccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHH
Confidence            23344333332    1 222  222221               1134569999999999999976433333444444333


Q ss_pred             H--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHH--------HHHHHHhhcCHHHHHH
Q 004254          442 A--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLL--------EAFYGIYEKDADKVLQ  511 (765)
Q Consensus       442 l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~--------~l~~ai~~~D~~~i~~  511 (765)
                      +  +-..+..+|..|++|+|+||.||+++.  ++.++|+|||++..+.......-.        .-......++..++++
T Consensus       122 ~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aP  199 (303)
T 1zy4_A          122 FRQILEALSYIHSQGIIHRDLKPMNIFIDE--SRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVAT  199 (303)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCCGGGEEECT--TSCEEECCCCCCSCTTC-------------------------CTTSCH
T ss_pred             HHHHHHHHHHHHhCCeecccCCHHhEEEcC--CCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCc
Confidence            2  334478899999999999999999985  889999999999877543210000        0000112245556777


Q ss_pred             HHHHc-CCCCCCCCHHHHHHHHHHHH
Q 004254          512 AMVQM-GVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       512 ~l~~l-G~~~~~~D~~~l~~~~~~~l  536 (765)
                      ++... +..++..|++++...+.+++
T Consensus       200 E~~~~~~~~~~~~Di~slG~il~~l~  225 (303)
T 1zy4_A          200 EVLDGTGHYNEKIDMYSLGIIFFEMI  225 (303)
T ss_dssp             HHHTSCSCCCTHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCcchhhHHHHHHHHHHHH
Confidence            77753 45667789999887766554

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.53  E-value=2.3e-14  Score=156.18  Aligned_cols=180  Identities=18%  Similarity=0.216  Sum_probs=114.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++||+|++|+||+|+.  +|+.||||+........                                  ...+      .
T Consensus        31 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~------~   70 (367)
T 1cm8_A           31 QPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSE----------------------------------LFAK------R   70 (367)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEECSSTTSSH----------------------------------HHHH------H
T ss_pred             EEeeecCCeEEEEEEECCCCCEEEEEEeCccccCH----------------------------------HHHH------H
Confidence            7899999999999998  69999999874422111                                  0111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc-----CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY-----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQ  449 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~-----st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~q  449 (765)
                      +.+|.+.+..+.    +..-+.+-.++..-     .+..++||||+ |.+|.++...  ..++...+...+  +-..+..
T Consensus        71 ~~~E~~~l~~l~----hpnIv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~~~~qi~~~L~~  143 (367)
T 1cm8_A           71 AYRELRLLKHMR----HENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKH--EKLGEDRIQFLVYQMLKGLRY  143 (367)
T ss_dssp             HHHHHHHHHHCC----BTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC----CcCCCCceeeEecCCccccCceEEEEEecC-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHH
Confidence            334444444432    22223333333221     13459999999 7788886543  334544443333  3345788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAV  528 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l  528 (765)
                      +|..|++|+|+||+||+++.  ++.++|+|||++...+.....         ..++..++++++... ...+...|++++
T Consensus       144 LH~~~ivH~Dlkp~NIll~~--~~~~kl~Dfg~a~~~~~~~~~---------~~~t~~y~aPE~~~~~~~~~~~~Diwsl  212 (367)
T 1cm8_A          144 IHAAGIIHRDLKPGNLAVNE--DCELKILDFGLARQADSEMTG---------YVVTRWYRAPEVILNWMRYTQTVDIWSV  212 (367)
T ss_dssp             HHHTTEECCCCCGGGEEECT--TCCEEECCCTTCEECCSSCCS---------SCSCGGGCCTHHHHTTTCCCTTHHHHHH
T ss_pred             HHHCCccccCcCHHHEEEcC--CCCEEEEeeecccccccccCc---------CcCCCCcCCHHHHhCCCCCChhhhHHHH
Confidence            99999999999999999986  889999999999887653211         134566777776654 456778899999


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      ...+.+++
T Consensus       213 G~il~ell  220 (367)
T 1cm8_A          213 GCIMAEMI  220 (367)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87776655

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.53  E-value=2e-14  Score=158.06  Aligned_cols=186  Identities=16%  Similarity=0.170  Sum_probs=119.1

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|++|.||+|.. +|+.||||+........                                  +.      .-.+
T Consensus        62 ~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~------~~~~  101 (390)
T 2zmd_A           62 KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADN----------------------------------QT------LDSY  101 (390)
T ss_dssp             EEEECCSSEEEEEEECTTCCEEEEEEEECTTCCH----------------------------------HH------HHHH
T ss_pred             EEEccCCCeEEEEEEcCCCCEEEEEEEecccccH----------------------------------HH------HHHH
Confidence            6899999999999999 69999999885432110                                  00      1134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~Gf  455 (765)
                      .+|+..+.++.+   ++++|.-..-+.......+|||| +.|++|.++.... ..++...+...+  +-..+..+|..|+
T Consensus       102 ~~Ei~~l~~l~~---~~~~iv~~~~~~~~~~~~~lv~E-~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~lH~~~i  176 (390)
T 2zmd_A          102 RNEIAYLNKLQQ---HSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIHQHGI  176 (390)
T ss_dssp             HHHHHHHHHHTT---TCTTBCCEEEEEECSSEEEEEEE-CCSEEHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHccc---CCCeEEEEEEEEecCCEEEEEEe-cCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            556666666543   12333222222344556799999 5677888865422 234443333322  2344788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----------CCCCCCCC
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----------GVLVPTGD  524 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-----------G~~~~~~D  524 (765)
                      +|+|+||.||+++   ++.++|+|||++..+.+......    .....+++.++++++...           +..++..|
T Consensus       177 vHrDlkp~NIll~---~~~~kl~DFG~a~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~D  249 (390)
T 2zmd_A          177 VHSDLKPANFLIV---DGMLKLIDFGIANQMQPDTTSVV----KDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSD  249 (390)
T ss_dssp             CCCCCCGGGEEES---SSCEEECCCSSSCCC-------------CCSCCCGGGCCHHHHHCC------------CCHHHH
T ss_pred             eecCCCHHHEEEE---CCeEEEEecCccccccCCCcccc----CCCCCcCCCccChHHhhhccccccccccccCCCChhh
Confidence            9999999999995   68999999999998765432111    112346788889988764           24555678


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++...+.+++
T Consensus       250 iwSlGvil~ell  261 (390)
T 2zmd_A          250 VWSLGCILYYMT  261 (390)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999887766654

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.53  E-value=1.7e-14  Score=165.39  Aligned_cols=182  Identities=15%  Similarity=0.119  Sum_probs=125.8

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|++|.||+|++ .+..||||+.+++....                                           -+|
T Consensus       273 ~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~-------------------------------------------~~~  309 (535)
T 2h8h_A          273 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-------------------------------------------EAF  309 (535)
T ss_dssp             EEEEECSSEEEEEEEETTTEEEEEEEECTTSSCH-------------------------------------------HHH
T ss_pred             eecccCCCeEEEEEEECCCceEEEEEeCCCCCCH-------------------------------------------HHH
Confidence            6899999999999999 56889999986542110                                           135


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      .+|++.+.++.    +..-+.+-.++.  ....+|||||++|++|.++..... ..++...+...+.+  ..+..+|..|
T Consensus       310 ~~E~~~l~~l~----hpniv~~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~  383 (535)
T 2h8h_A          310 LQEAQVMKKLR----HEKLVQLYAVVS--EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN  383 (535)
T ss_dssp             HHHHHHHHHCC----CTTBCCEEEEEC--SSSCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCC----CCCEeeEEEEEe--eccceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            56776666552    222222222222  256799999999999998764322 23555555444433  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||.|||++.  ++.++|+|||++..+.......     .........+++++....+..+...|++++...+.+
T Consensus       384 ivHrDlkp~NIll~~--~~~~kl~DFG~a~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~e  456 (535)
T 2h8h_A          384 YVHRDLRAANILVGE--NLVCKVADFGLARLIEDNEYTA-----RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE  456 (535)
T ss_dssp             CCCSCCSGGGEEECG--GGCEEECCTTSTTTCCCHHHHT-----TCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             eeCCCCCHhhEEEcC--CCcEEEcccccceecCCCceec-----ccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHH
Confidence            999999999999986  7899999999998876532111     011123456788888887777778899998876655


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       457 l~  458 (535)
T 2h8h_A          457 LT  458 (535)
T ss_dssp             HT
T ss_pred             HH
Confidence            43

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.53  E-value=5.6e-15  Score=157.08  Aligned_cols=184  Identities=19%  Similarity=0.163  Sum_probs=112.5

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +.||+|++|.||+|+.+|+.||||+.++.-...                                             +.
T Consensus        19 ~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~---------------------------------------------~~   53 (336)
T 3g2f_A           19 ELIGRGRYGAVYKGSLDERPVAVKVFSFANRQN---------------------------------------------FI   53 (336)
T ss_dssp             EEEEECSSEEEEEEEETTEEEEEEEEEGGGHHH---------------------------------------------HH
T ss_pred             eecccCCCeEEEEEEECCeEEEEEEeeccchhh---------------------------------------------HH
Confidence            789999999999999999999999985322111                                             01


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeee-----cc--CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHH
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFW-----EY--TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQ  449 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~-----e~--st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~q  449 (765)
                      .|.. +..+ ..+ .+++  +.+++.     ..  ....+|||||++|++|.++...  ...+...+...+  +...+..
T Consensus        54 ~e~~-~~~~-~~~-~h~~--i~~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~i~~qi~~~L~~  126 (336)
T 3g2f_A           54 NEKN-IYRV-PLM-EHDN--IARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSL--HTSDWVSSCRLAHSVTRGLAY  126 (336)
T ss_dssp             HHHH-HHTS-TTC-CCTT--BCCEEEEEEEECTTSCEEEEEEECCCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHH-Hhc-cCcc--hhhheecccccccCCCceEEEEEecCCCCcHHHHHhh--cccchhHHHHHHHHHHHHHHH
Confidence            1110 0000 011 2222  223321     11  1234899999999999987543  233433333322  3345788


Q ss_pred             HHhC---------CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhH--HHHHHHHHHHhhcCHHHHHHHHHHcC-
Q 004254          450 ILSH---------GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR--EGLLEAFYGIYEKDADKVLQAMVQMG-  517 (765)
Q Consensus       450 i~~~---------GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r--~~l~~l~~ai~~~D~~~i~~~l~~lG-  517 (765)
                      +|..         |++|+|+||+||+++.  ++.++|+|||++..+.....  ..-.........++..++++++...+ 
T Consensus       127 LH~~~~~~~~~~~~ivH~Dikp~Nill~~--~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  204 (336)
T 3g2f_A          127 LHTELPRGDHYKPAISHRDLNSRNVLVKN--DGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAV  204 (336)
T ss_dssp             HHCCBCCGGGCBCCEECSSCSGGGEEECT--TSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCC
T ss_pred             HHhhhccccccccceeecccccceEEEcC--CCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCc
Confidence            8988         9999999999999985  78999999999987754210  00000111112467778888877542 


Q ss_pred             ------CCCCCCCHHHHHHHHHHHH
Q 004254          518 ------VLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       518 ------~~~~~~D~~~l~~~~~~~l  536 (765)
                            ..++..|++++...+.+++
T Consensus       205 ~~~~~~~~~~~~DiwslG~il~ell  229 (336)
T 3g2f_A          205 NLRDXESALKQVDMYALGLIYWEIF  229 (336)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchHHHHHHHHHHH
Confidence                  2223458888877666554

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.53  E-value=1.4e-14  Score=154.71  Aligned_cols=184  Identities=14%  Similarity=0.095  Sum_probs=118.7

Q ss_pred             ccccccceeEEEEEEe--CCeE----EEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEE----VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~----VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +.||+|++|.||+|++  +|+.    ||+|..++.....                                         
T Consensus        21 ~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------------   59 (327)
T 3poz_A           21 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK-----------------------------------------   59 (327)
T ss_dssp             EEEEEETTEEEEEEEECC----CCEEEEEEEC------------------------------------------------
T ss_pred             eEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHH-----------------------------------------
Confidence            6899999999999997  4654    5777653321100                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeec-cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQ  449 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e-~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~q  449 (765)
                      ..-.|.+|+..+.++.    + ++  +++++.- .....+++|||++|++|.+........++...+...+.  ...+..
T Consensus        60 ~~~~~~~E~~~l~~l~----h-~~--iv~~~~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~  132 (327)
T 3poz_A           60 ANKEILDEAYVMASVD----N-PH--VCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNY  132 (327)
T ss_dssp             CHHHHHHHHHHHHHCC----B-TT--BCCEEEEEESSSEEEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC----C-CC--EeEEEEEEecCCeEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            0113455666555542    2 32  2333321 23557899999999999987654344455555444433  344888


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..|++|+|+||.||+++.  ++.++|+|||++..++........    ........+++++...-+..++..|++++.
T Consensus       133 LH~~~ivH~Dikp~NIll~~--~~~~kl~Dfg~a~~~~~~~~~~~~----~~~~~t~~y~aPE~~~~~~~~~~~Di~slG  206 (327)
T 3poz_A          133 LEDRRLVHRDLAARNVLVKT--PQHVKITDFGLAKLLGAEEKEYHA----EGGKVPIKWMALESILHRIYTHQSDVWSYG  206 (327)
T ss_dssp             HHHTTCCCSCCCGGGEEEEE--TTEEEECCTTHHHHHTTTCC-----------CCCGGGSCHHHHHHCCCCHHHHHHHHH
T ss_pred             HhhCCeeCCCCChheEEECC--CCCEEEccCcceeEccCCcccccc----cCCCccccccChHHhccCCCCchhhhhhhH
Confidence            99999999999999999986  899999999999877554322111    112335567888888777777788999998


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       207 ~il~ell  213 (327)
T 3poz_A          207 VTVWELM  213 (327)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766554

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.53  E-value=7.5e-15  Score=161.98  Aligned_cols=191  Identities=13%  Similarity=0.160  Sum_probs=125.6

Q ss_pred             hcccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004254          293 FERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (765)
Q Consensus       293 F~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (765)
                      ++.|.. +.||.|++|.||+|+.  +|+.||||+.+....                ...         ..          
T Consensus        14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~----------------~~~---------~~----------   58 (384)
T 4fr4_A           14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKC----------------VER---------NE----------   58 (384)
T ss_dssp             GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHH----------------HHT---------TC----------
T ss_pred             hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhc----------------ccH---------HH----------
Confidence            345543 7899999999999998  589999998743110                000         00          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHH
Q 004254          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYL  447 (765)
Q Consensus       370 ~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L  447 (765)
                          .-.+.+|++.+..+     ++++|.-..-+.......++||||++|++|.+.... ...++...+...+  +-..+
T Consensus        59 ----~~~~~~E~~il~~l-----~hp~Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~aL  128 (384)
T 4fr4_A           59 ----VRNVFKELQIMQGL-----EHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQ-NVHFKEETVKLFICELVMAL  128 (384)
T ss_dssp             ----HHHHHHHHHHHHTC-----CCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHT-TCCCCHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhC-----CCCCCCcEEEEEEeCCEEEEEEecCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHH
Confidence                01233444444433     233332222222334567999999999999886532 2234544443333  33457


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc---CCCCCCCC
Q 004254          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM---GVLVPTGD  524 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l---G~~~~~~D  524 (765)
                      ..+|..|++|+|+||+||+++.  +|.++|+|||++..++.....       ....+++.++++++...   ...+...|
T Consensus       129 ~~LH~~givHrDlkp~NIll~~--~g~vkL~DFG~a~~~~~~~~~-------~~~~gt~~Y~aPE~~~~~~~~~~~~~~D  199 (384)
T 4fr4_A          129 DYLQNQRIIHRDMKPDNILLDE--HGHVHITDFNIAAMLPRETQI-------TTMAGTKPYMAPEMFSSRKGAGYSFAVD  199 (384)
T ss_dssp             HHHHHTTEECCCCSGGGEEECT--TSCEEECCCTTCEECCTTCCB-------CCCCSCGGGCCGGGTCCCSSCCBCTTHH
T ss_pred             HHHHHCCceeccCcHHHeEECC--CCCEEEeccceeeeccCCCce-------eccCCCccccCCeeeccCCCCCCCccce
Confidence            8899999999999999999986  899999999999987654221       11346778888888752   23466789


Q ss_pred             HHHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFLN  537 (765)
Q Consensus       525 ~~~l~~~~~~~l~  537 (765)
                      ++++...+.+++.
T Consensus       200 iwSlG~il~ellt  212 (384)
T 4fr4_A          200 WWSLGVTAYELLR  212 (384)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             eechHHHHHHHHh
Confidence            9999987776653

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.52  E-value=9.4e-15  Score=165.86  Aligned_cols=183  Identities=13%  Similarity=0.053  Sum_probs=124.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|++  +|..||||+.+++...                                           .-+
T Consensus       226 ~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~-------------------------------------------~~~  262 (495)
T 1opk_A          226 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-------------------------------------------VEE  262 (495)
T ss_dssp             EESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSC-------------------------------------------HHH
T ss_pred             eEecCCCCeEEEEEEEcCCCeEEEEEEecCcccc-------------------------------------------hHH
Confidence            6899999999999999  4899999988543211                                           013


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      |.+|++.+.++.     +++|.-..-+.......+|||||++|++|.++... ....++...+...+  +...+..+|..
T Consensus       263 ~~~E~~~l~~l~-----hpniv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~  337 (495)
T 1opk_A          263 FLKEAAVMKEIK-----HPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK  337 (495)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcC-----CCCEeeEEEEEecCCcEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            456666665552     23332222222334567999999999999987543 22234555444433  33458889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||.|||++.  ++.++|+|||++..+.......     .........+++++....+..+...|++++...+.
T Consensus       338 ~ivHrDlkp~NIll~~--~~~~kl~DFG~a~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~  410 (495)
T 1opk_A          338 NFIHRNLAARNCLVGE--NHLVKVADFGLSRLMTGDTYTA-----HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLW  410 (495)
T ss_dssp             TEECSCCSGGGEEECG--GGCEEECCTTCEECCTTCCEEC-----CTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHH
T ss_pred             CcccCCCChhhEEECC--CCcEEEeecccceeccCCceee-----cCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHH
Confidence            9999999999999986  7899999999998775432100     00112235677888887777777789999887766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       411 el~  413 (495)
T 1opk_A          411 EIA  413 (495)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.52  E-value=3.8e-14  Score=149.35  Aligned_cols=188  Identities=15%  Similarity=0.145  Sum_probs=113.4

Q ss_pred             ccccccceeEEEEEEe-C----CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-K----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~----G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||+|++|.||+|++ .    ++.||||+.++.....                                 .       .
T Consensus        40 ~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~---------------------------------~-------~   79 (313)
T 3brb_A           40 KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQ---------------------------------R-------E   79 (313)
T ss_dssp             EEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCH---------------------------------H-------H
T ss_pred             cceeecCCeEEEEEEEeccCCceeEEEEEEEeccccch---------------------------------h-------H
Confidence            6799999999999987 2    4589999885432111                                 0       0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCC----CeEEEEeecCCCChhhhhhhh-----hcCCCHHHHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTT----PQILTMEYVPGIKINRIQSLD-----ELGVDRKRLGRYAVE  444 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st----~~vLVMEyieG~~L~d~~~l~-----~~g~d~~~ia~~li~  444 (765)
                      .-.+.+|++.+.++    .+..-+.+-.++.+...    ..+++|||++|++|.++....     ...++...+...+..
T Consensus        80 ~~~~~~e~~~l~~l----~h~~iv~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~q  155 (313)
T 3brb_A           80 IEEFLSEAACMKDF----SHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVD  155 (313)
T ss_dssp             HHHHHHHHHHHHTC----CCTTBCCCCEEEEC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC----CCCCeeeeeEEEeeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHH
Confidence            01244555555444    22222233333322221    349999999999999875321     123455554444333


Q ss_pred             --HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004254          445 --SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (765)
Q Consensus       445 --~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~  522 (765)
                        ..+..+|..|++|+|+||+||+++.  ++.++|+|||++..+........    .........+++++....+..++.
T Consensus       156 i~~aL~~LH~~~ivH~dikp~NIli~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~  229 (313)
T 3brb_A          156 IALGMEYLSNRNFLHRDLAARNCMLRD--DMTVCVADFGLSKKIYSGDYYRQ----GRIAKMPVKWIAIESLADRVYTSK  229 (313)
T ss_dssp             HHHHHHHHHTTTCCCCCCSGGGEEECT--TSCEEECSCSCC--------------------CCGGGSCHHHHHSSCCCHH
T ss_pred             HHHHHHHHHhCCcccCCCCcceEEEcC--CCcEEEeecCcceecccccccCc----ccccCCCccccCchhhcCCCccch
Confidence              3478899999999999999999985  78999999999987755432111    112234566778888877767777


Q ss_pred             CCHHHHHHHHHHHH
Q 004254          523 GDTTAVRRTAQFFL  536 (765)
Q Consensus       523 ~D~~~l~~~~~~~l  536 (765)
                      .|++++...+.+++
T Consensus       230 ~Di~slG~il~el~  243 (313)
T 3brb_A          230 SDVWAFGVTMWEIA  243 (313)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHH
Confidence            89999887666554

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.52  E-value=8.4e-15  Score=152.81  Aligned_cols=182  Identities=15%  Similarity=0.074  Sum_probs=115.2

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +.||.|++|.||+|+.+|+.||||+.++.....                                             +.
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~---------------------------------------------~~   48 (301)
T 3q4u_A           14 ECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKS---------------------------------------------WF   48 (301)
T ss_dssp             EEEEECSSEEEEEEEETTEEEEEEEECGGGHHH---------------------------------------------HH
T ss_pred             EeeccCCCcEEEEEEECCEEEEEEEeccccchh---------------------------------------------hH
Confidence            689999999999999999999999985432111                                             11


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeee------ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHH
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFW------EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQI  450 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~------e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi  450 (765)
                      .|...+...  .+ .+++|  .+.+.      ......++||||++|++|.++..  ...++...+...+.  ...+..+
T Consensus        49 ~e~~~~~~~--~l-~h~ni--v~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~--~~~~~~~~~~~i~~~i~~~l~~l  121 (301)
T 3q4u_A           49 RETELYNTV--ML-RHENI--LGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQ--LTTLDTVSCLRIVLSIASGLAHL  121 (301)
T ss_dssp             HHHHHHHHT--CC-CCTTB--CCEEEEEEEEETTEEEEEEEECCCTTCBHHHHHT--TCCBCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh--hc-cCcCe--eeEEEeeccccCCCceeEEehhhccCCCHHHHHh--hcccCHHHHHHHHHHHHHHHHHH
Confidence            122111110  02 22332  22221      11234689999999999998753  33455554444333  3347889


Q ss_pred             H--------hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC---
Q 004254          451 L--------SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL---  519 (765)
Q Consensus       451 ~--------~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~---  519 (765)
                      |        ..|++|+|+||+||+++.  ++.++|+|||++..++........  ......+++.++++++...+..   
T Consensus       122 H~~~~~~~~~~~ivH~Dlkp~Nill~~--~~~~kl~Dfg~a~~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~  197 (301)
T 3q4u_A          122 HIEIFGTQGKPAIAHRDLKSKNILVKK--NGQCCIADLGLAVMHSQSTNQLDV--GNNPRVGTKRYMAPEVLDETIQVDC  197 (301)
T ss_dssp             HSCBCSTTCBCEEECSCCCGGGEEECT--TSCEEECCCTTCEEEETTTTEEEC--CCCCCCCCGGGCCHHHHTTCCCTTC
T ss_pred             HHhhhhccCCCCeecCCCChHhEEEcC--CCCEEEeeCCCeeecccccccccc--cccccccccceeChhhhcCcCCCCc
Confidence            9        999999999999999985  889999999998765443211000  0000135677888888765422   


Q ss_pred             ---CCCCCHHHHHHHHHHHH
Q 004254          520 ---VPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       520 ---~~~~D~~~l~~~~~~~l  536 (765)
                         ++..|++++...+.+++
T Consensus       198 ~~~~~~~DvwslG~il~el~  217 (301)
T 3q4u_A          198 FDSYKRVDIWAFGLVLWEVA  217 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCchhhHHHHHHHHHHHH
Confidence               23468888877665554

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.52  E-value=2.3e-14  Score=165.93  Aligned_cols=179  Identities=17%  Similarity=0.137  Sum_probs=104.9

Q ss_pred             cccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       300 PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      -..+++.|+++.++.  .|+.|+||+..........                              ..+-.+.  .--+|
T Consensus       241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~------------------------------~~~~~~~--~~~~~  288 (569)
T 4azs_A          241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGIL------------------------------TAEESQR--NKYEL  288 (569)
T ss_dssp             C-C--------CCEEEEECSSEEEEEEESSCSTTCS------------------------------CHHHHHH--HHHHH
T ss_pred             ccccCCcccccccccccccceeEEEEEecccccccc------------------------------hhhhhHH--HHHHH
Confidence            467788888877776  6999999998544321100                              0000000  01135


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~Gf  455 (765)
                      .+|+.-+.++.      .+..+|+++.  +.....|||||||+|++|.++... ....+..+++..++ ..+..+|..||
T Consensus       289 ~~E~~~l~~~~------~~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d~i~~-~~~l~~~~I~~QIl-~AL~ylH~~GI  360 (569)
T 4azs_A          289 HNEIKFLTQPP------AGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAA-GEEIDREKILGSLL-RSLAALEKQGF  360 (569)
T ss_dssp             HHHHHHHHSCC------TTCCCCCEEEEEECSSEEEEEEECCCSEEHHHHHHT-TCCCCHHHHHHHHH-HHHHHHHHTTC
T ss_pred             HHHHHHHHhcC------CCCCeeEEEEEEEECCEEEEEEecCCCCcHHHHHHh-CCCCCHHHHHHHHH-HHHHHHHHCCc
Confidence            66766665542      2345677665  445667999999999999997642 33466677765544 45889999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~  527 (765)
                      +|||+||+|||+++  +|+++|+|||+++.+.......      ....+++.++++++.. |......|.++
T Consensus       361 IHRDIKPeNILL~~--dg~vKL~DFGlAr~~~~~~~~~------~t~vGTp~YmAPE~l~-g~~~~~~d~~s  423 (569)
T 4azs_A          361 WHDDVRPWNVMVDA--RQHARLIDFGSIVTTPQDCSWP------TNLVQSFFVFVNELFA-ENKSWNGFWRS  423 (569)
T ss_dssp             EESCCCGGGEEECT--TSCEEECCCTTEESCC---CCS------HHHHHHHHHHHHHHC-------------
T ss_pred             eeccCchHhEEECC--CCCEEEeecccCeeCCCCCccc------cCceechhhccHHHhC-CCCCCcccccc
Confidence            99999999999986  8999999999999876542111      1123577888888864 33333445443

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.52  E-value=2.5e-14  Score=148.66  Aligned_cols=183  Identities=16%  Similarity=0.141  Sum_probs=123.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+..+.....                                 .+.      +-.
T Consensus        20 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------------~~~------~~~   60 (284)
T 2vgo_A           20 RPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEK---------------------------------EGV------EHQ   60 (284)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHH---------------------------------TTC------HHH
T ss_pred             heecCCCCeEEEEEEEcCCCcEEEEEEEcccccch---------------------------------HHH------HHH
Confidence            7899999999999999  58999999874321000                                 000      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|+..+.++    . ++++.-..-+.......+++|||++|++|.+..... ..++...+...+  +...+..+|..|
T Consensus        61 ~~~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~  134 (284)
T 2vgo_A           61 LRREIEIQSHL----R-HPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKH-GRFDEQRSATFMEELADALHYCHERK  134 (284)
T ss_dssp             HHHHHHHHHTC----C-CTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhcC----C-CCCEeeEEEEEEcCCEEEEEEEeCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34455444433    2 333322222233456679999999999998865322 234544444333  233478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|++|+||+++.  ++.++|+|||++.........        ...++..++++++...+..++..|++++...+.+
T Consensus       135 i~H~dl~p~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~  204 (284)
T 2vgo_A          135 VIHRDIKPENLLMGY--KGELKIADFGWSVHAPSLRRR--------TMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYE  204 (284)
T ss_dssp             EECCCCSGGGEEECT--TCCEEECCCTTCEECSSSCBC--------CCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHH
T ss_pred             ceecCCCHHHEEEcC--CCCEEEecccccccCcccccc--------cccCCCCcCCHHHhccCCCCcccchhhHHHHHHH
Confidence            999999999999985  889999999998766543211        1245777888888887777788899999877665


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       205 l~  206 (284)
T 2vgo_A          205 FL  206 (284)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.52  E-value=7.2e-15  Score=158.97  Aligned_cols=187  Identities=16%  Similarity=0.117  Sum_probs=117.0

Q ss_pred             hcccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004254          293 FERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (765)
Q Consensus       293 F~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (765)
                      .+.|.. +.||.|++|.||+|+.  +|+.||||+.......                                       
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~---------------------------------------   61 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD---------------------------------------   61 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCC---------------------------------------
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCC---------------------------------------
Confidence            334443 6899999999999999  5999999998543211                                       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHH
Q 004254          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYL  447 (765)
Q Consensus       370 ~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L  447 (765)
                             ...|...+.++.    .+++|.-..-+.+.....++||||++|++|.+.... ...++...+...+.  -..+
T Consensus        62 -------~~~E~~~l~~~~----~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~i~~-~~~~~~~~~~~~~~qi~~al  129 (342)
T 2qr7_A           62 -------PTEEIEILLRYG----QHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILR-QKFFSEREASAVLFTITKTV  129 (342)
T ss_dssp             -------CHHHHHHHHHHT----TSTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHT-CTTCCHHHHHHHHHHHHHHH
T ss_pred             -------hHHHHHHHHHhc----CCCCcCeEEEEEEcCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHH
Confidence                   112222232221    233332222222345567999999999999886532 22345444443332  3347


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCC--CcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004254          448 EQILSHGFFHADPHPGNIAVDDVNG--GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~~~--g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~  525 (765)
                      ..+|..|++|+|+||+||++.+.++  +.++|+|||++..+......      .....+++.++++++..-...++..|+
T Consensus       130 ~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~Di  203 (342)
T 2qr7_A          130 EYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGL------LMTPCYTANFVAPEVLERQGYDAACDI  203 (342)
T ss_dssp             HHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCC------BCCSSCCSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCc------eeccCCCccccCHHHhcCCCCCCccCe
Confidence            8899999999999999999964211  35999999999876543210      001123555666666554334456788


Q ss_pred             HHHHHHHHHHH
Q 004254          526 TAVRRTAQFFL  536 (765)
Q Consensus       526 ~~l~~~~~~~l  536 (765)
                      +++...+.+++
T Consensus       204 wslG~il~ell  214 (342)
T 2qr7_A          204 WSLGVLLYTML  214 (342)
T ss_dssp             HHHHHHHHHHH
T ss_pred             eeHhHHHHHHh
Confidence            88887666554

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.52  E-value=1.1e-14  Score=152.97  Aligned_cols=186  Identities=13%  Similarity=0.064  Sum_probs=120.2

Q ss_pred             ccccccceeEEEEEEe-------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||+|++|.||+|+.       +|+.||||+.+++....                                   .    
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~----   69 (314)
T 2ivs_A           29 KTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPS-----------------------------------E----   69 (314)
T ss_dssp             EEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHH-----------------------------------H----
T ss_pred             eeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHH-----------------------------------H----
Confidence            6899999999999986       24899999986543211                                   0    


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc--------------------
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL--------------------  431 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~--------------------  431 (765)
                        .-++.+|++.+.++     .+++|.-..-+.......++||||++|++|.++......                    
T Consensus        70 --~~~~~~E~~~l~~l-----~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  142 (314)
T 2ivs_A           70 --LRDLLSEFNVLKQV-----NHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHP  142 (314)
T ss_dssp             --HHHHHHHHHHHTTC-----CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC--------------
T ss_pred             --HHHHHHHHHHHhhC-----CCCceeeEEEEEecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccc
Confidence              01234455544433     233332222223445667999999999999987543211                    


Q ss_pred             ---CCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCH
Q 004254          432 ---GVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDA  506 (765)
Q Consensus       432 ---g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~  506 (765)
                         .++...+...+  +-..+..+|..|++|+|+||+||+++.  ++.++|+|||++..+.......-    .......+
T Consensus       143 ~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dikp~NIli~~--~~~~kl~Dfg~~~~~~~~~~~~~----~~~~~~~~  216 (314)
T 2ivs_A          143 DERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAE--GRKMKISDFGLSRDVYEEDSYVK----RSQGRIPV  216 (314)
T ss_dssp             --CEECHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEET--TTEEEECCCTTCEECTTTSCEEC----SSCCCSCG
T ss_pred             cccCcCHHHHHHHHHHHHHHHHHHHHCCCcccccchheEEEcC--CCCEEEcccccccccccccccee----ccCCCCcc
Confidence               13333333333  234478899999999999999999986  88999999999987654321000    00112345


Q ss_pred             HHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          507 DKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       507 ~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      .+++++....+..++..|++++...+.+++
T Consensus       217 ~y~aPE~~~~~~~~~~~Di~slG~il~el~  246 (314)
T 2ivs_A          217 KWMAIESLFDHIYTTQSDVWSFGVLLWEIV  246 (314)
T ss_dssp             GGCCHHHHHHCEECHHHHHHHHHHHHHHHH
T ss_pred             cccChhhhcCCCcCchhhHHHHHHHHHHHH
Confidence            567777776666677789998887666554

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.52  E-value=3.9e-14  Score=147.91  Aligned_cols=185  Identities=15%  Similarity=0.112  Sum_probs=117.0

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||+|++|.||+|+.  +|+.||||+........                           +.        +      
T Consensus        27 ~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---------------------------~~--------~------   65 (285)
T 3is5_A           27 KRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQV---------------------------PM--------E------   65 (285)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCS---------------------------CH--------H------
T ss_pred             cceeccCCCeEEEEEEEccCCceEEEEEeeccccch---------------------------hH--------H------
Confidence            37899999999999998  58999999875432110                           00        0      


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh---hcCCCHHHHHHHHH--HHHHHHH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYAV--ESYLEQI  450 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~---~~g~d~~~ia~~li--~~~L~qi  450 (765)
                      .+.+|++.+.++    . +++|.-..-+.......++||||++|++|.+.....   ...++...+...+.  -..+..+
T Consensus        66 ~~~~E~~~l~~l----~-hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~L  140 (285)
T 3is5_A           66 QIEAEIEVLKSL----D-HPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYF  140 (285)
T ss_dssp             HHHHHHHHHHTC----C-CTTBCCEEEEEECSSEEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC----C-CchHHhHHHheecCCeEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHH
Confidence            233444444433    2 233322222223345679999999999998854321   13355544444333  3347889


Q ss_pred             HhCCccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      |..|++|+|+||+||++++. .++.++|+|||++..+......       ....++..++++++.. +-.+...|++++.
T Consensus       141 H~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~~-------~~~~~t~~y~aPE~~~-~~~~~~~Di~slG  212 (285)
T 3is5_A          141 HSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHS-------TNAAGTALYMAPEVFK-RDVTFKCDIWSAG  212 (285)
T ss_dssp             HHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-----------------CTTGGGCCHHHHT-TCCCHHHHHHHHH
T ss_pred             HhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcccC-------cCcccccCcCChHHhc-cCCCcccCeehHH
Confidence            99999999999999999641 2578999999999876553221       1123566777788765 3445667888888


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       213 ~il~~ll  219 (285)
T 3is5_A          213 VVMYFLL  219 (285)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7666554

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.52  E-value=1e-14  Score=155.47  Aligned_cols=183  Identities=12%  Similarity=0.041  Sum_probs=113.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+.......                                         ...
T Consensus         8 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~-----------------------------------------~~~   46 (324)
T 3mtl_A            8 DKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGA-----------------------------------------PCT   46 (324)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECC-----------------------------------------------CCC
T ss_pred             EEEcCCCCEEEEEEEECCCCcEEEEEEEeccccccc-----------------------------------------chh
Confidence            6899999999999999  699999998854321110                                         001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|++.+.++    . +++|.-..-+.......++||||++| .+.+........++...+...+  +-..+..+|..|
T Consensus        47 ~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~  120 (324)
T 3mtl_A           47 AIREVSLLKDL----K-HANIVTLHDIIHTEKSLTLVFEYLDK-DLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQK  120 (324)
T ss_dssp             CCCCHHHHSCC----C-CTTBCCEEEEEECSSCEEEEEECCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhc----C-CCCCCeeeeEEeeCCEEEEEeccccc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            11233333222    2 23332222223345667999999997 5666543333335544444333  334578899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|+||+||+++.  ++.++|+|||++...+......      ....++..++++++..- ...++..|++++...+.
T Consensus       121 ivH~Dikp~NIl~~~--~~~~kl~Dfg~a~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~  192 (324)
T 3mtl_A          121 VLHRDLKPQNLLINE--RGELKLADFGLARAKSIPTKTY------DNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFY  192 (324)
T ss_dssp             EEESSCCGGGEEECT--TCCEEECSSSEEECC------------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHH
T ss_pred             ccCCCcCHHHEEECC--CCCEEEccCcccccccCCcccc------ccccCcccccChhhhcCCCCCCcHHHHHHHHHHHH
Confidence            999999999999985  7899999999998766432211      11124666777887654 34566679999987766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       193 ~l~  195 (324)
T 3mtl_A          193 EMA  195 (324)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.52  E-value=6.4e-14  Score=148.63  Aligned_cols=190  Identities=12%  Similarity=0.089  Sum_probs=119.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.++.....-.                                  ........+
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~----------------------------------~~~~~~~~~   61 (322)
T 2ycf_A           16 KTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGS----------------------------------AREADPALN   61 (322)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECC-------------------------------------------------C
T ss_pred             eEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcc----------------------------------cccchhhhh
Confidence            6899999999999998  5899999998553211000                                  000001123


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|++.+.++    .+..-+.+-.++.  ....++||||++|++|.+... ....++...+...+  +-..+..+|..|
T Consensus        62 ~~~E~~~l~~l----~h~~i~~~~~~~~--~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~  134 (322)
T 2ycf_A           62 VETEIEILKKL----NHPCIIKIKNFFD--AEDYYIVLELMEGGELFDKVV-GNKRLKEATCKLYFYQMLLAVQYLHENG  134 (322)
T ss_dssp             HHHHHHHHHHC----CCTTBCCEEEEEE--SSSEEEEEECCTTEETHHHHS-TTCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----CCCCCceEeeEEc--CCceEEEEecCCCCcHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            55566555554    2222222323322  345799999999999988643 22334544443333  234478899999


Q ss_pred             ccccCCCCCcEEEeecC-CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCCHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVN-GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRR  530 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~-~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~---lG~~~~~~D~~~l~~  530 (765)
                      ++|+|+||.||+++... ++.++|+|||++..+......       ....++..++++++..   .+..++..|++++..
T Consensus       135 ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~  207 (322)
T 2ycf_A          135 IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLM-------RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGV  207 (322)
T ss_dssp             EECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCCHHH-------HHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHH
T ss_pred             eeccCCCHHHEEEecCCCCCeEEEccCccceeccccccc-------ccccCCcCccCchhhccCCCCCCCchhhHHHHHH
Confidence            99999999999998511 235999999999988654321       1123566777777763   344556779999987


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       208 il~~l~  213 (322)
T 2ycf_A          208 ILFICL  213 (322)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766554

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.52  E-value=3.1e-14  Score=158.64  Aligned_cols=183  Identities=16%  Similarity=0.175  Sum_probs=122.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|+.  +|+.||||+.+..-.                                     ...      .
T Consensus       103 ~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~-------------------------------------~~~------~  139 (429)
T 3kvw_A          103 KVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKR-------------------------------------FHR------Q  139 (429)
T ss_dssp             EEEEESSSEEEEEEEETTTTEEEEEEEECSCHH-------------------------------------HHH------H
T ss_pred             EEcccCccEEEEEEEECCCCcEEEEEEECCccc-------------------------------------hHH------H
Confidence            6899999999999998  589999999854211                                     011      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQIL  451 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~l--i~~~L~qi~  451 (765)
                      +..|.+.+..++..- ......+..++.  ......++||||++| .|.++..... .+++...+...+  +...+..+|
T Consensus       140 ~~~E~~~l~~l~~~~-~~~~~~iv~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH  217 (429)
T 3kvw_A          140 AAEEIRILEHLRKQD-KDNTMNVIHMLENFTFRNHICMTFELLSM-NLYELIKKNKFQGFSLPLVRKFAHSILQCLDALH  217 (429)
T ss_dssp             HHHHHHHHHHHHTTC-TTSCSCBCCEEEEEEETTEEEEEECCCCC-BHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcc-ccCCcCEEEEEeecccCCeEEEEEeccCC-CHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            233444444444321 112233444443  334567999999986 6666543222 235554443333  233478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCc--EEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGR--LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~--l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      ..|++|+|+||.|||++.  ++.  ++|+|||++........         ...++..++++++...+..++..|++++.
T Consensus       218 ~~~ivHrDlKp~NILl~~--~~~~~vkL~DFG~a~~~~~~~~---------~~~gt~~y~aPE~~~~~~~~~~~DiwSlG  286 (429)
T 3kvw_A          218 KNRIIHCDLKPENILLKQ--QGRSGIKVIDFGSSCYEHQRVY---------TYIQSRFYRAPEVILGARYGMPIDMWSLG  286 (429)
T ss_dssp             HHTEECSCCSGGGEEESS--TTSCCEEECCCTTCEETTCCCC---------SSCSCGGGCCHHHHHTBCCCTHHHHHHHH
T ss_pred             HCCeecCCCCHHHeEEcc--CCCcceEEeecccceecCCccc---------ccCCCCCccChHHHhCCCCCchHHHHhHH
Confidence            999999999999999986  555  99999999976654321         12356778888888877778888999998


Q ss_pred             HHHHHHHH
Q 004254          530 RTAQFFLN  537 (765)
Q Consensus       530 ~~~~~~l~  537 (765)
                      ..+.+++.
T Consensus       287 ~il~ellt  294 (429)
T 3kvw_A          287 CILAELLT  294 (429)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            87766653

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.51  E-value=1.6e-14  Score=153.53  Aligned_cols=188  Identities=16%  Similarity=0.096  Sum_probs=119.0

Q ss_pred             ccccccceeEEEEEEe-------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||.|++|.||+|+.       +|+.||||+.+......                                        
T Consensus        36 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------------   75 (327)
T 2yfx_A           36 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQ----------------------------------------   75 (327)
T ss_dssp             EECC--CSSCEEEEEC--------CCEEEEEECCSSCCHH----------------------------------------
T ss_pred             EEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchh----------------------------------------
Confidence            6899999999999994       47789999874322111                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh------cCCCHHHHHHHHH--
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE------LGVDRKRLGRYAV--  443 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~------~g~d~~~ia~~li--  443 (765)
                       .+.++.+|+..+.++     .+++|.-..-+.......++||||++|++|.++.....      ..++...+...+.  
T Consensus        76 -~~~~~~~E~~~l~~l-----~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi  149 (327)
T 2yfx_A           76 -DELDFLMEALIISKF-----NHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDI  149 (327)
T ss_dssp             -HHHHHHHHHHHHHHC-----CCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHhhC-----CCCCCCeEEEEEcCCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHH
Confidence             122455666655554     23333222222333456799999999999998764322      1244444443332  


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004254          444 ESYLEQILSHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (765)
Q Consensus       444 ~~~L~qi~~~GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~  522 (765)
                      ...+..+|..|++|+|+||.||+++.. ++..++|+|||++..+.......    ......++..+++++....+..++.
T Consensus       150 ~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~  225 (327)
T 2yfx_A          150 ACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYR----KGGCAMLPVKWMPPEAFMEGIFTSK  225 (327)
T ss_dssp             HHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC----------CCGGGSCGGGCCHHHHHHCCCCHH
T ss_pred             HHHHHHHhhCCeecCcCCHhHEEEecCCCcceEEECccccccccccccccc----cCCCcCCCcceeCHhHhcCCCCCch
Confidence            334788999999999999999999841 13469999999987553322110    0111234556778888777777777


Q ss_pred             CCHHHHHHHHHHHH
Q 004254          523 GDTTAVRRTAQFFL  536 (765)
Q Consensus       523 ~D~~~l~~~~~~~l  536 (765)
                      .|++++...+.+++
T Consensus       226 ~Di~slG~il~ell  239 (327)
T 2yfx_A          226 TDTWSFGVLLWEIF  239 (327)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            89999887666554

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.51  E-value=1.6e-14  Score=153.53  Aligned_cols=187  Identities=14%  Similarity=0.080  Sum_probs=122.4

Q ss_pred             ccccccceeEEEEEEe--CC-----eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KG-----EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G-----~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||.|++|.||+|+.  +|     ..||||+.++.....                                        
T Consensus        52 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------------   91 (333)
T 2i1m_A           52 KTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHAD----------------------------------------   91 (333)
T ss_dssp             EEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHH----------------------------------------
T ss_pred             eEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChH----------------------------------------
Confidence            6899999999999998  23     479999985532111                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-------------cCCCHHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-------------LGVDRKRL  438 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-------------~g~d~~~i  438 (765)
                       ..-.+.+|++.+.++.    .+++|.-..-+.......++||||++|++|.++.....             ..++...+
T Consensus        92 -~~~~~~~E~~~l~~l~----~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  166 (333)
T 2i1m_A           92 -EKEALMSELKIMSHLG----QHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDL  166 (333)
T ss_dssp             -HHHHHHHHHHHHHHHC----CCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHH
T ss_pred             -HHHHHHHHHHHHHhhc----CCCCeeeEEEEEecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHH
Confidence             0113445665555552    23333222223344567799999999999998654221             12344444


Q ss_pred             HHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004254          439 GRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  516 (765)
Q Consensus       439 a~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l  516 (765)
                      ...+  +...+..+|..|++|+|+||+||+++.  ++.++|+|||++..+.......    ......+...+++++...-
T Consensus       167 ~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~  240 (333)
T 2i1m_A          167 LHFSSQVAQGMAFLASKNCIHRDVAARNVLLTN--GHVAKIGDFGLARDIMNDSNYI----VKGNARLPVKWMAPESIFD  240 (333)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECSCCSGGGCEEEG--GGEEEBCCCGGGCCGGGCTTSE----ECSSCEECGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcccCCcccceEEECC--CCeEEECcccccccccccccee----ecCCCCCCccccCHHHhcc
Confidence            4333  234478899999999999999999986  7899999999998764432100    0011123446778887776


Q ss_pred             CCCCCCCCHHHHHHHHHHHH
Q 004254          517 GVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       517 G~~~~~~D~~~l~~~~~~~l  536 (765)
                      +..++..|++++...+.+++
T Consensus       241 ~~~~~~~Di~slG~il~el~  260 (333)
T 2i1m_A          241 CVYTVQSDVWSYGILLWEIF  260 (333)
T ss_dssp             CCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCChHHHHHHHHHHHHHHH
Confidence            66777789998887665543

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.51  E-value=3.4e-14  Score=166.50  Aligned_cols=185  Identities=14%  Similarity=0.095  Sum_probs=122.2

Q ss_pred             ccccccceeEEEEEEe----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      +.||+|+||.||+|.+    .++.||||+.+.+....                              .    .      .
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~------------------------------~----~------~  414 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDP------------------------------A----L------K  414 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCG------------------------------G----G------H
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCH------------------------------H----H------H
Confidence            4799999999999976    36899999986543211                              0    0      1


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQIL  451 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~  451 (765)
                      -+|.+|++.+.++.     +++| .+-.++ + ....+|||||++|++|.++... ...++...+...+.  ...+..+|
T Consensus       415 ~~~~~E~~il~~l~-----hpnIv~l~~~~-~-~~~~~lv~E~~~~g~L~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH  486 (635)
T 4fl3_A          415 DELLAEANVMQQLD-----NPYIVRMIGIC-E-AESWMLVMEMAELGPLNKYLQQ-NRHVKDKNIIELVHQVSMGMKYLE  486 (635)
T ss_dssp             HHHHHHHHHHHHCC-----CTTBCCEEEEE-E-SSSEEEEEECCTTEEHHHHHHH-CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-----CCCEeeEEEEE-e-cCCEEEEEEccCCCCHHHHHhh-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            13455666555542     2332 222222 2 3457899999999999987632 22345544444333  33478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..|++|+|+||.||+++.  ++.++|+|||++..+.........   .........++++++...+..+...|++++...
T Consensus       487 ~~~iiHrDLkp~NILl~~--~~~~kL~DFGla~~~~~~~~~~~~---~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~  561 (635)
T 4fl3_A          487 ESNFVHRDLAARNVLLVT--QHYAKISDFGLSKALRADENYYKA---QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVL  561 (635)
T ss_dssp             HTTCCCSCCSGGGEEEEE--TTEEEECCTTHHHHTTC----------------CGGGSCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HCCEeCCCCChHhEEEeC--CCCEEEEEcCCccccccCcccccc---ccCCCCceeeeChhhhcCCCCCcHHHHHHHHHH
Confidence            999999999999999997  889999999999887654321110   111123456888888887777778899999877


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       562 l~ell  566 (635)
T 4fl3_A          562 MWEAF  566 (635)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.51  E-value=5.6e-14  Score=145.15  Aligned_cols=183  Identities=14%  Similarity=0.115  Sum_probs=120.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                  +..+      .
T Consensus        12 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~------~   51 (279)
T 2w5a_A           12 YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE----------------------------------AEKQ------M   51 (279)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCH----------------------------------HHHH------H
T ss_pred             hhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCH----------------------------------HHHH------H
Confidence            7899999999999999  69999999885432110                                  0011      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee----ccCCCeEEEEeecCCCChhhhhhhhh---cCCCHHHHHHHHHH--HHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW----EYTTPQILTMEYVPGIKINRIQSLDE---LGVDRKRLGRYAVE--SYL  447 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~----e~st~~vLVMEyieG~~L~d~~~l~~---~g~d~~~ia~~li~--~~L  447 (765)
                      +.+|++.+.++.     +++  +++++.    +.....++||||++|++|.++.....   ..++...+...+..  ..+
T Consensus        52 ~~~e~~~l~~l~-----h~~--i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l  124 (279)
T 2w5a_A           52 LVSEVNLLRELK-----HPN--IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLAL  124 (279)
T ss_dssp             HHHHHHHHHHCC-----CTT--BCCEEEEEEEGGGTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-----CCC--CCeEEEEEecCCCceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHH
Confidence            444555555442     232  233332    22345799999999999998754322   12555544444333  347


Q ss_pred             HHHHhCC-----ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCC
Q 004254          448 EQILSHG-----FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPT  522 (765)
Q Consensus       448 ~qi~~~G-----ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~  522 (765)
                      ..+|..|     ++|+|++|.||+++.  ++.++|+|||++..+.......      ....++..+++++....+..++.
T Consensus       125 ~~lH~~~~~~~~ivH~dl~p~NIl~~~--~~~~kl~dfg~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~  196 (279)
T 2w5a_A          125 KECHRRSDGGHTVLHRDLKPANVFLDG--KQNVKLGDFGLARILNHDTSFA------KTFVGTPYYMSPEQMNRMSYNEK  196 (279)
T ss_dssp             HHHHHHC------CCCCCSGGGEEECS--SSCEEECCCCHHHHC---CHHH------HHHHSCCTTCCHHHHHCC-CCHH
T ss_pred             HHHhcccCCCCeeEEeccchhhEEEcC--CCCEEEecCchheeeccccccc------cccCCCccccChHHhccCCCCch
Confidence            8899988     999999999999985  8899999999998776543211      11235667788888876666667


Q ss_pred             CCHHHHHHHHHHHH
Q 004254          523 GDTTAVRRTAQFFL  536 (765)
Q Consensus       523 ~D~~~l~~~~~~~l  536 (765)
                      .|++++...+.+++
T Consensus       197 ~Di~slG~il~~l~  210 (279)
T 2w5a_A          197 SDIWSLGCLLYELC  210 (279)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            78888887666554

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.51  E-value=2e-14  Score=149.74  Aligned_cols=189  Identities=12%  Similarity=0.038  Sum_probs=120.5

Q ss_pred             ccccccceeEEEEEEe--C---CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--K---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~---G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||+|++|.||+|+.  +   +..||||+........                                   .      
T Consensus        27 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~-----------------------------------~------   65 (298)
T 3pls_A           27 RVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQ-----------------------------------Q------   65 (298)
T ss_dssp             EEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHH-----------------------------------H------
T ss_pred             ceeccCCCceEEEEEEecCCCceeeeeeeeccccccHH-----------------------------------H------
Confidence            6799999999999997  3   3479999874322111                                   0      


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  451 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~  451 (765)
                      .-.|.+|+..+.++    .+..-+.+-.++.+.....+++|||+.|++|.+.........+...+...+  +-..+..+|
T Consensus        66 ~~~~~~E~~~l~~l----~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH  141 (298)
T 3pls_A           66 VEAFLREGLLMRGL----NHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLA  141 (298)
T ss_dssp             HHHHHHHHHHHHTC----CCTTBCCCCEEECCSSSCCEEEECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC----CCCCeeeEEEEEecCCCCcEEEEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            01234455444433    222222333333232333489999999999998765434445555544433  334588899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..|++|+|+||+||+++.  ++.++|+|||++..+..........  .........+++++....+..++..|++++...
T Consensus       142 ~~~i~H~dikp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  217 (298)
T 3pls_A          142 EQKFVHRDLAARNCMLDE--SFTVKVADFGLARDILDREYYSVQQ--HRHARLPVKWTALESLQTYRFTTKSDVWSFGVL  217 (298)
T ss_dssp             HTTCCCSCCSGGGEEECT--TCCEEECCTTSSCTTTTGGGGCSCC--SSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHH
T ss_pred             hCCcccCCCCcceEEEcC--CCcEEeCcCCCcccccCCccccccc--CcCCCCCccccChhhhccCCCChhhchhhHHHH
Confidence            999999999999999985  8899999999998765432110000  000123445677777766666667799998877


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       218 l~~l~  222 (298)
T 3pls_A          218 LWELL  222 (298)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66654

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.51  E-value=3e-14  Score=160.69  Aligned_cols=181  Identities=17%  Similarity=0.167  Sum_probs=114.6

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+........                                  ....      .
T Consensus        68 ~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~----------------------------------~~~~------~  107 (464)
T 3ttj_A           68 KPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQ----------------------------------THAK------R  107 (464)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSH----------------------------------HHHH------H
T ss_pred             EEeecCCCeEEEEEEECCCCCEEEEEEECccccCh----------------------------------HHHH------H
Confidence            7899999999999998  69999999885432111                                  0011      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc-----CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY-----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQ  449 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~-----st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~q  449 (765)
                      +.+|.+.+..+    .+..-+.+-.++...     ....+|||||++|..+..+    ...++...+...+  +-..++.
T Consensus       108 ~~~E~~~l~~l----~hpnIv~l~~~~~~~~~~~~~~~~~lv~E~~~~~l~~~~----~~~l~~~~~~~~~~qil~aL~~  179 (464)
T 3ttj_A          108 AYRELVLMKCV----NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVI----QMELDHERMSYLLYQMLCGIKH  179 (464)
T ss_dssp             HHHHHHHHHHC----CCTTBCCCSEEECSCCSTTTCCEEEEEEECCSEEHHHHH----TSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----CCCCCCcEEEEEccCCccccCCeEEEEEeCCCCCHHHHH----hhcCCHHHHHHHHHHHHHHHHH
Confidence            23344444333    222223333333211     1345999999998633332    1234544443333  2334788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..|++|+|+||+||+++.  ++.++|+|||++.........       .-..++..+++++++.-...++..|++++.
T Consensus       180 lH~~~iiHrDlkp~NIll~~--~~~~kl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG  250 (464)
T 3ttj_A          180 LHSAGIIHRDLKPSNIVVKS--DCTLKILDFGLARTAGTSFMM-------TPYVVTRYYRAPEVILGMGYKENVDIWSVG  250 (464)
T ss_dssp             HHHTTCCCCCCCGGGEEECT--TSCEEECCCCCC-----CCCC-----------CCCTTCCHHHHTTCCCCTTHHHHHHH
T ss_pred             HHHCCcccCCCChHhEEEeC--CCCEEEEEEEeeeecCCCccc-------CCCcccccccCHHHHcCCCCCHHHHHHHHH
Confidence            99999999999999999986  889999999999876543210       112346677888888766677788999999


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       251 ~il~ell  257 (464)
T 3ttj_A          251 CIMGEMV  257 (464)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777665

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.51  E-value=1.4e-14  Score=154.20  Aligned_cols=187  Identities=17%  Similarity=0.189  Sum_probs=121.1

Q ss_pred             ccccccceeEEEEEEe------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +.||+|++|+||+|+.      +|+.||||+.++...+.                                         
T Consensus        47 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------------   85 (326)
T 2w1i_A           47 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEH-----------------------------------------   85 (326)
T ss_dssp             EEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHH-----------------------------------------
T ss_pred             eeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHH-----------------------------------------
Confidence            6899999999999983      58999999986532211                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLE  448 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~  448 (765)
                       .-.+.+|++.+.++    . +++| .+-.++... ....++||||++|++|.++.......++...+...+.+  ..+.
T Consensus        86 -~~~~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~  159 (326)
T 2w1i_A           86 -LRDFEREIEILKSL----Q-HDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME  159 (326)
T ss_dssp             -HHHHHHHHHHHHTC----C-CTTBCCEEEEECC----CCEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhC----C-CCCeeeEEEEEEecCCCceEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence             01234455544443    2 2322 222222111 12569999999999999976543334565555544333  3478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      .+|..|++|+|+||+||+++.  +++++|+|||++..+........   .......+..+++++....+..++..|++++
T Consensus       160 ~LH~~~ivH~dikp~NIli~~--~~~~kL~Dfg~~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  234 (326)
T 2w1i_A          160 YLGTKRYIHRDLATRNILVEN--ENRVKIGDFGLTKVLPQDKEYYK---VKEPGESPIFWYAPESLTESKFSVASDVWSF  234 (326)
T ss_dssp             HHHHTTEECSCCCGGGEEEEE--TTEEEECCCTTCEECCSSCSEEE---CSSCCSCCGGGCCHHHHHHCEEEHHHHHHHH
T ss_pred             HHHhCCEeccCCCcceEEEcC--CCcEEEecCcchhhccccccccc---cccCCCCceeEECchhhcCCCCCchhhHHHH
Confidence            899999999999999999986  88999999999987754321000   0000122334566666665555667899999


Q ss_pred             HHHHHHHHH
Q 004254          529 RRTAQFFLN  537 (765)
Q Consensus       529 ~~~~~~~l~  537 (765)
                      ...+.+++.
T Consensus       235 G~il~el~t  243 (326)
T 2w1i_A          235 GVVLYELFT  243 (326)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            887766654

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.51  E-value=4.5e-14  Score=154.07  Aligned_cols=184  Identities=16%  Similarity=0.087  Sum_probs=119.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|+||+|+.  +|+.||||+.+..-.                                     +..      .
T Consensus        60 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-------------------------------------~~~------~   96 (382)
T 2vx3_A           60 SLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKA-------------------------------------FLN------Q   96 (382)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEECSSHH-------------------------------------HHH------H
T ss_pred             EEEeecCCEEEEEEEEcCCCcEEEEEEEeccHH-------------------------------------HHH------H
Confidence            6899999999999998  589999999853210                                     001      1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHH--HHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAV--ESYLEQIL  451 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li--~~~L~qi~  451 (765)
                      +..|.+.+..+... .......++.++.  ......+|||||++| .|.++..... .+++...+...+.  ...+..+|
T Consensus        97 ~~~e~~~l~~l~~~-~~~~~~~iv~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH  174 (382)
T 2vx3_A           97 AQIEVRLLELMNKH-DTEMKYYIVHLKRHFMFRNHLCLVFEMLSY-NLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLA  174 (382)
T ss_dssp             HHHHHHHHHHHHHC-SSGGGGGBCCEEEEEEETTEEEEEEECCCC-BHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc-ccccceeEEEeeeeeccCCceEEEEecCCC-CHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            22334444444321 1111122333332  334667999999987 7777543322 2345444333322  23356667


Q ss_pred             --hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          452 --SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       452 --~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                        ..|++|+|+||+||++....++.++|+|||++..++....         -..+++.++++++..-+..++..|++++.
T Consensus       175 ~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~~~~---------~~~~t~~y~aPE~~~~~~~~~~~DiwSlG  245 (382)
T 2vx3_A          175 TPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIY---------QYIQSRFYRSPEVLLGMPYDLAIDMWSLG  245 (382)
T ss_dssp             STTTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTCCCC---------SSCSCGGGCCHHHHTTCCCCTHHHHHHHH
T ss_pred             cCCCCEEcCCCCcccEEEecCCCCcEEEEeccCceecccccc---------cccCCccccChHHHcCCCCCcHHHHHHHH
Confidence              5799999999999999643467899999999988765321         12456778888888776677788999998


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       246 ~il~ell  252 (382)
T 2vx3_A          246 CILVEMH  252 (382)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766654

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.51  E-value=3.1e-14  Score=152.41  Aligned_cols=186  Identities=10%  Similarity=0.021  Sum_probs=122.9

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||+|++|.||+|+.  +|+.||+|+........                                 .+..      -
T Consensus        46 ~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~---------------------------------~~~~------~   86 (335)
T 2owb_A           46 GRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLK---------------------------------PHQR------E   86 (335)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCS---------------------------------HHHH------H
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcC---------------------------------HHHH------H
Confidence            37899999999999999  58999999874432110                                 0011      1


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~  453 (765)
                      .+.+|+..+..+    . +++|.-..-+.......++||||++|++|.++... ...++...+...+.+  ..+..+|..
T Consensus        87 ~~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~  160 (335)
T 2owb_A           87 KMSMEISIHRSL----A-HQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKR-RKALTEPEARYYLRQIVLGCQYLHRN  160 (335)
T ss_dssp             HHHHHHHHHHTC----C-CTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC----C-CCCCCeEEEEEecCCeEEEEEecCCCCCHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            234454444433    2 23332222222334567999999999999886532 234555544444333  347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||+||+++.  ++.++|+|||++..+......      .....++..++++++......+...|++++...+.
T Consensus       161 ~ivH~dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~  232 (335)
T 2owb_A          161 RVIHRDLKLGNLFLNE--DLEVKIGDFGLATKVEYDGER------KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMY  232 (335)
T ss_dssp             TEECSCCCGGGEEECT--TCCEEECCCTTCEECCSTTCC------BCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHH
T ss_pred             CCEecCCCchhEEEcC--CCCEEEeeccCceecccCccc------ccccCCCccccCHHHhccCCCCchhhHHHHHHHHH
Confidence            9999999999999985  889999999999876532110      01123456677788777666677789999887766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       233 ~l~  235 (335)
T 2owb_A          233 TLL  235 (335)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.51  E-value=6.2e-14  Score=147.78  Aligned_cols=190  Identities=14%  Similarity=0.111  Sum_probs=117.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.++.....                                          .-.
T Consensus        35 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~------------------------------------------~~~   72 (317)
T 2buj_A           35 QKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQD------------------------------------------REE   72 (317)
T ss_dssp             EEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHH------------------------------------------HHH
T ss_pred             EEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHH------------------------------------------HHH
Confidence            6899999999999998  69999999874421110                                          012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec---cCCCeEEEEeecCCCChhhhhhhh---hcCCCHHHHHHHHHH--HHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWE---YTTPQILTMEYVPGIKINRIQSLD---ELGVDRKRLGRYAVE--SYLE  448 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e---~st~~vLVMEyieG~~L~d~~~l~---~~g~d~~~ia~~li~--~~L~  448 (765)
                      +.+|+..+..+    .+..-+.+-..+..   .....++||||++|++|.++....   ...++...+...+.+  ..+.
T Consensus        73 ~~~E~~~l~~l----~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~  148 (317)
T 2buj_A           73 AQREADMHRLF----NHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLE  148 (317)
T ss_dssp             HHHHHHHHHTC----CCTTBCCCCEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhc----CCCCeeeEEEEEEeccCCCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            33444444333    22222222222221   223568999999999998865431   233555554444333  3478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChh---hHHHHHHHHHHHhhcCHHHHHHHHHHcC---CCCCC
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN---IREGLLEAFYGIYEKDADKVLQAMVQMG---VLVPT  522 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~---~r~~l~~l~~ai~~~D~~~i~~~l~~lG---~~~~~  522 (765)
                      .+|..|++|+|+||.||+++.  ++.++|+|||++......   ........-.....++..++++++....   ..++.
T Consensus       149 ~LH~~~ivH~dlkp~NIl~~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~  226 (317)
T 2buj_A          149 AIHAKGYAHRDLKPTNILLGD--EGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDER  226 (317)
T ss_dssp             HHHHTTEECCCCCGGGEEECT--TSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTH
T ss_pred             HHHhCCcccCCCCHHHEEEcC--CCCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCch
Confidence            899999999999999999985  889999999998876432   1111111111223456667777765432   13556


Q ss_pred             CCHHHHHHHHHHHH
Q 004254          523 GDTTAVRRTAQFFL  536 (765)
Q Consensus       523 ~D~~~l~~~~~~~l  536 (765)
                      .|++++...+.+++
T Consensus       227 ~Di~slG~il~el~  240 (317)
T 2buj_A          227 TDVWSLGCVLYAMM  240 (317)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            79999887766554

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.50  E-value=1.1e-14  Score=151.48  Aligned_cols=185  Identities=15%  Similarity=0.131  Sum_probs=120.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|++  +|+.||||+.+......-....                            +. .      -.
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~----------------------------~~-~------~~   69 (287)
T 4f0f_A           25 KQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMI----------------------------EK-F------QE   69 (287)
T ss_dssp             EECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHH----------------------------CC-S------HH
T ss_pred             hccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHH----------------------------HH-H------HH
Confidence            6899999999999999  6999999998654322100000                            00 0      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|++.+.++    . +  -.+++++.-+.+..++||||++|++|.+........++...+...+.+  ..+..+|..|
T Consensus        70 ~~~E~~~l~~l----~-h--~~i~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~  142 (287)
T 4f0f_A           70 FQREVFIMSNL----N-H--PNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQN  142 (287)
T ss_dssp             HHHHHHHHTTC----C-C--TTBCCEEEEETTTTEEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHhC----C-C--CCchhhheeecCCCeEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhCC
Confidence            34455444433    2 2  235556655667779999999999997765433334555554444333  3478899999


Q ss_pred             --ccccCCCCCcEEEeecCCCc-----EEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH--cCCCCCCCCH
Q 004254          455 --FFHADPHPGNIAVDDVNGGR-----LIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ--MGVLVPTGDT  525 (765)
Q Consensus       455 --ffHaDpHPGNILV~~~~~g~-----l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~--lG~~~~~~D~  525 (765)
                        ++|+|+||.||+++.  ++.     ++|+|||++........         -..+++.+++++...  .+..++..|+
T Consensus       143 ~~ivH~dikp~Nil~~~--~~~~~~~~~kl~Dfg~~~~~~~~~~---------~~~g~~~y~aPE~~~~~~~~~~~~~Di  211 (287)
T 4f0f_A          143 PPIVHRDLRSPNIFLQS--LDENAPVCAKVADFGLSQQSVHSVS---------GLLGNFQWMAPETIGAEEESYTEKADT  211 (287)
T ss_dssp             SCCBCSCCSGGGEEESC--CCTTCSCCEEECCCTTCBCCSSCEE---------CCCCCCTTSCGGGSSCSSCEECHHHHH
T ss_pred             CCeecCCCCcceEEEec--cCCCCceeEEeCCCCcccccccccc---------ccCCCccccCchhhccCCCCcCchhhH
Confidence              999999999999975  444     99999999986654321         123455666676652  2223445688


Q ss_pred             HHHHHHHHHHH
Q 004254          526 TAVRRTAQFFL  536 (765)
Q Consensus       526 ~~l~~~~~~~l  536 (765)
                      +++...+.+++
T Consensus       212 ~slG~~l~~l~  222 (287)
T 4f0f_A          212 YSFAMILYTIL  222 (287)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88887666554

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.50  E-value=1.1e-14  Score=156.64  Aligned_cols=192  Identities=17%  Similarity=0.139  Sum_probs=116.3

Q ss_pred             cccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      ..|.. +.||.|++|.||+|+.  +|+.||||+.++.......                               +.... 
T Consensus        10 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~-------------------------------~~~~~-   57 (346)
T 1ua2_A           10 KRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAK-------------------------------DGINR-   57 (346)
T ss_dssp             ---CEEEEEEEETTEEEEEEECSSCCSEEEEEEC-------------------------------------------CT-
T ss_pred             cccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhh-------------------------------hhhhH-
Confidence            34443 7899999999999999  5999999988543211100                               00001 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHH
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLE  448 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~  448 (765)
                           .+.+|++.+..+    . +++|.-..-+.......++||||++| .+.+........++...+...+  +...+.
T Consensus        58 -----~~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~  126 (346)
T 1ua2_A           58 -----TALREIKLLQEL----S-HPNIIGLLDAFGHKSNISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLE  126 (346)
T ss_dssp             -----HHHHHHHHHHHC----C-CTTBCCEEEEECCTTCCEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHhhC----C-CCCCCeEEEEEeeCCceEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHH
Confidence                 233455444443    2 23332222222345677999999998 6666543222223333333222  334588


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTA  527 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~  527 (765)
                      .+|..|++|+|+||+||+++.  ++.++|+|||++..+.......      ....+++.++++++... ...+...|+++
T Consensus       127 ~lH~~~ivH~Dlkp~Nil~~~--~~~~kl~Dfg~a~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~~Diws  198 (346)
T 1ua2_A          127 YLHQHWILHRDLKPNNLLLDE--NGVLKLADFGLAKSFGSPNRAY------THQVVTRWYRAPELLFGARMYGVGVDMWA  198 (346)
T ss_dssp             HHHHTTCCCCCCCGGGEEECT--TCCEEECCCGGGSTTTSCCCCC------CCSCCCCTTCCHHHHTTCSCCCHHHHHHH
T ss_pred             HHHHCCEECCCCCHHHEEEcC--CCCEEEEecccceeccCCcccC------CcccccccccCchHhhCCCCCCchhhhHh
Confidence            899999999999999999985  8899999999998775432110      01124556777777643 33455679999


Q ss_pred             HHHHHHHHH
Q 004254          528 VRRTAQFFL  536 (765)
Q Consensus       528 l~~~~~~~l  536 (765)
                      +...+.+++
T Consensus       199 lG~il~ell  207 (346)
T 1ua2_A          199 VGCILAELL  207 (346)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887766654

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.50  E-value=1.3e-14  Score=164.61  Aligned_cols=185  Identities=18%  Similarity=0.172  Sum_probs=122.5

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||.|++|+||+|+.  +|+.||||+.++.....                          .+       ...      
T Consensus        21 ~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~--------------------------~~-------~~~------   61 (476)
T 2y94_A           21 GDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRS--------------------------LD-------VVG------   61 (476)
T ss_dssp             EEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHH--------------------------TT-------THH------
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccC--------------------------HH-------HHH------
Confidence            37899999999999998  69999999884321000                          00       001      


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      .+.+|++.+..+    . +++|.-..-+.+..+..+|||||++|++|.++... ...++...+...+  +-..+..+|..
T Consensus        62 ~~~~Ei~~l~~l----~-HpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~l~~~~~~~i~~qi~~aL~~LH~~  135 (476)
T 2y94_A           62 KIRREIQNLKLF----R-HPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICK-NGRLDEKESRRLFQQILSGVDYCHRH  135 (476)
T ss_dssp             HHHHHHHHHTTC----C-CTTBCCEEEEEECSSEEEEEEECCSSEEHHHHTTS-SSSCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhC----C-CCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            234455444333    2 23332222222345667999999999999886532 2234444443333  23347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~-~~~~D~~~l~~~~  532 (765)
                      |++|+|+||+||+++.  ++.++|+|||++..++....       .....+++.++++++...... .+..|++++...+
T Consensus       136 givHrDLkp~NIll~~--~~~vkL~DFG~a~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil  206 (476)
T 2y94_A          136 MVVHRDLKPENVLLDA--HMNAKIADFGLSNMMSDGEF-------LRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVIL  206 (476)
T ss_dssp             TEECSCCSGGGEEECT--TCCEEECCCSSCEECCTTCC-------BCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHH
T ss_pred             CCCcccccHHHEEEec--CCCeEEEeccchhhcccccc-------ccccCCCcCeEChhhccCCCCCCCcceehhhHHHH
Confidence            9999999999999985  88999999999988765321       111246777888888765433 4567999998776


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       207 ~ell  210 (476)
T 2y94_A          207 YALL  210 (476)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6654

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.50  E-value=5.1e-14  Score=146.05  Aligned_cols=183  Identities=16%  Similarity=0.170  Sum_probs=105.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.++......                                         +..
T Consensus        13 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~-----------------------------------------~~~   51 (290)
T 3fme_A           13 MELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQE-----------------------------------------QKR   51 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHH-----------------------------------------HHH
T ss_pred             HhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHH-----------------------------------------HHH
Confidence            6899999999999999  699999999855322110                                         001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh---hhcCCCHHHHHHHHH--HHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYAV--ESYLEQIL  451 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l---~~~g~d~~~ia~~li--~~~L~qi~  451 (765)
                      +..|...   ..... +++++.-..-+....+..++||||++| .+.+....   ....++...+...+.  -..+..+|
T Consensus        52 ~~~~~~~---~~~~~-~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH  126 (290)
T 3fme_A           52 LLMDLDI---SMRTV-DCPFTVTFYGALFREGDVWICMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH  126 (290)
T ss_dssp             HHHHHHH---HHTTC-CCTTBCCEEEEEECSSSEEEEEECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH---HHHhC-CCCeEEEEeeeeeccCCEEEEEehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            1111111   11122 233332222223345677999999997 66554321   122345444443332  33478889


Q ss_pred             hC-CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH----cCCCCCCCCHH
Q 004254          452 SH-GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ----MGVLVPTGDTT  526 (765)
Q Consensus       452 ~~-GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~----lG~~~~~~D~~  526 (765)
                      .. |++|+|+||.||+++.  +++++|+|||++..+.......       ...+++.+++++...    .+..++..|++
T Consensus       127 ~~~~i~H~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~-------~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~  197 (290)
T 3fme_A          127 SKLSVIHRDVKPSNVLINA--LGQVKMCDFGISGYLVDDVAKD-------IDAGCKPYMAPERINPELNQKGYSVKSDIW  197 (290)
T ss_dssp             HHSCCCCCCCSGGGCEECT--TCCEEBCCC----------------------CCCCCCSCHHHHSCCTTC--CCHHHHHH
T ss_pred             hcCCeecCCCCHHHEEECC--CCCEEEeecCCccccccccccc-------ccCCCccccChhhcChhhcCcCCCcHHHHH
Confidence            88 9999999999999985  7899999999998776543221       123566677888863    33344566888


Q ss_pred             HHHHHHHHHH
Q 004254          527 AVRRTAQFFL  536 (765)
Q Consensus       527 ~l~~~~~~~l  536 (765)
                      ++...+.+++
T Consensus       198 slG~il~~l~  207 (290)
T 3fme_A          198 SLGITMIELA  207 (290)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8887665554

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.50  E-value=1.4e-14  Score=153.81  Aligned_cols=187  Identities=15%  Similarity=0.099  Sum_probs=121.8

Q ss_pred             ccccccceeEEEEEEe------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +.||+|++|.||+|+.      +|+.||||+.+......                                   .     
T Consensus        37 ~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~-----   76 (318)
T 3lxp_A           37 RDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQ-----------------------------------H-----   76 (318)
T ss_dssp             EEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHH-----------------------------------H-----
T ss_pred             heecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChH-----------------------------------H-----
Confidence            7899999999988864      48999999986542111                                   0     


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQ  449 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~q  449 (765)
                       .-.+.+|++.+.++.    +..-+.+-.++.+. ....++||||++|++|.++..  ..+++...+...+.  -..+..
T Consensus        77 -~~~~~~E~~~l~~l~----h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~--~~~~~~~~~~~i~~~l~~~l~~  149 (318)
T 3lxp_A           77 -RSGWKQEIDILRTLY----HEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLP--RHSIGLAQLLLFAQQICEGMAY  149 (318)
T ss_dssp             -HHHHHHHHHHHHHCC----CTTBCCEEEEEEETTTTEEEEEECCCTTCBHHHHGG--GSCCCHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhCC----CcchhhEEEEEecCCCceEEEEEecccCCcHHHHHh--hCCCCHHHHHHHHHHHHHHHHH
Confidence             112444555555442    22222222333222 234589999999999998753  33455555544433  344788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..|++|+|+||+||+++.  ++.++|+|||++..++.......   ......+...+++++....+..++..|++++.
T Consensus       150 LH~~~ivH~Dikp~Nil~~~--~~~~kl~Dfg~a~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG  224 (318)
T 3lxp_A          150 LHAQHYIHRDLAARNVLLDN--DRLVKIGDFGLAKAVPEGHEYYR---VREDGDSPVFWYAPECLKEYKFYYASDVWSFG  224 (318)
T ss_dssp             HHHTTEECSCCSGGGEEECT--TCCEEECCGGGCEECCTTCSEEE---C---CCCCGGGCCHHHHHHCEEEHHHHHHHHH
T ss_pred             HHhCCccCCCCchheEEEcC--CCCEEECCccccccccccccccc---cccCCCCCceeeChHHhcCCCCCcHHHHHHHH
Confidence            99999999999999999985  88999999999988765321000   00111234456677777665566677999988


Q ss_pred             HHHHHHHH
Q 004254          530 RTAQFFLN  537 (765)
Q Consensus       530 ~~~~~~l~  537 (765)
                      ..+.+++.
T Consensus       225 ~il~~ll~  232 (318)
T 3lxp_A          225 VTLYELLT  232 (318)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            77766653

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.50  E-value=2.8e-14  Score=152.30  Aligned_cols=187  Identities=14%  Similarity=0.084  Sum_probs=119.8

Q ss_pred             ccccccceeEEEEEEe---------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL---------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l---------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (765)
                      +.||.|++|+||+|+.         +|+.||||+.++.....                                      
T Consensus        41 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~--------------------------------------   82 (334)
T 2pvf_A           41 KPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK--------------------------------------   82 (334)
T ss_dssp             EEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHH--------------------------------------
T ss_pred             eEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHH--------------------------------------
Confidence            7899999999999986         25789999986543211                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCC
Q 004254          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVD  434 (765)
Q Consensus       370 ~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d  434 (765)
                         ..-++.+|++.+.++.    .+++|.-..-+.......++||||++|++|.++.....               ..++
T Consensus        83 ---~~~~~~~E~~~l~~l~----~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~  155 (334)
T 2pvf_A           83 ---DLSDLVSEMEMMKMIG----KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMT  155 (334)
T ss_dssp             ---HHHHHHHHHHHHHHHC----CCTTBCCEEEEECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCC
T ss_pred             ---HHHHHHHHHHHHHHhh----cCCCEeeEEEEEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCC
Confidence               0012445555555542    23333222222233456799999999999998754321               1234


Q ss_pred             HHHHHHHHH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004254          435 RKRLGRYAV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  512 (765)
Q Consensus       435 ~~~ia~~li--~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~  512 (765)
                      ...+...+.  ...+..+|..|++|+|+||+||+++.  ++.++|+|||++..+........    .......+.+++++
T Consensus       156 ~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE  229 (334)
T 2pvf_A          156 FKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTE--NNVMKIADFGLARDINNIDYYKK----TTNGRLPVKWMAPE  229 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECT--TCCEEECCCTTCEECTTTSSEEC----CSCCCCCGGGCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeCCCCccceEEEcC--CCCEEEccccccccccccccccc----cCCCCcccceeChH
Confidence            444433332  33478899999999999999999985  88999999999987654321000    00012234567777


Q ss_pred             HHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          513 MVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       513 l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ....+..++..|++++...+.+++
T Consensus       230 ~~~~~~~~~~~Di~slG~il~ell  253 (334)
T 2pvf_A          230 ALFDRVYTHQSDVWSFGVLMWEIF  253 (334)
T ss_dssp             HHHHCEECHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCcChHHHHHHHHHHHHHHH
Confidence            776666667788988887665543

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.50  E-value=4.6e-14  Score=147.87  Aligned_cols=209  Identities=15%  Similarity=0.073  Sum_probs=117.1

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||+|++|+||+|+.  +|+.||||+.++.....-.          .+.....+.      ............-...-
T Consensus        18 ~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~----------~~~~~~~~~------~~~~~~~~~~~~~~~~~   81 (298)
T 2zv2_A           18 KDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQA----------GFPRRPPPR------GTRPAPGGCIQPRGPIE   81 (298)
T ss_dssp             EEEEEC--CCEEEEEEETTTTEEEEEEEEECC-----------------------------------------------C
T ss_pred             EeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhc----------ccccccccc------cccccccccccccchHH
Confidence            37899999999999998  6999999998764321100          000000000      00000000000000112


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS  452 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~  452 (765)
                      ++.+|++.+.++    .+..-+.+-.++.+. ....++||||++|++|.++..  ...++...+...+.  -..+..+|.
T Consensus        82 ~~~~E~~~l~~l----~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~  155 (298)
T 2zv2_A           82 QVYQEIAILKKL----DHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT--LKPLSEDQARFYFQDLIKGIEYLHY  155 (298)
T ss_dssp             HHHHHHHHHHTC----CCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC--SSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC----CCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            355666655554    222222333333221 345699999999999988643  23345444443332  334788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC---CCCCCCHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV---LVPTGDTTAVR  529 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~---~~~~~D~~~l~  529 (765)
                      .|++|+|+||+||+++.  +++++|+|||++..+......      ..-..++..+++++....+.   ..+..|++++.
T Consensus       156 ~~ivH~Dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG  227 (298)
T 2zv2_A          156 QKIIHRDIKPSNLLVGE--DGHIKIADFGVSNEFKGSDAL------LSNTVGTPAFMAPESLSETRKIFSGKALDVWAMG  227 (298)
T ss_dssp             TTEECCCCCGGGEEECT--TSCEEECCCTTCEECSSSSCE------ECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHH
T ss_pred             CCeeccCCCHHHEEECC--CCCEEEecCCCcccccccccc------ccCCcCCccccChhhhccCCCCCCCchhhhHhHH
Confidence            99999999999999985  889999999999877543210      00123566677777654322   13345888887


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       228 ~~l~~l~  234 (298)
T 2zv2_A          228 VTLYCFV  234 (298)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665544

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.50  E-value=4.5e-14  Score=151.63  Aligned_cols=186  Identities=13%  Similarity=0.126  Sum_probs=106.4

Q ss_pred             hcccCc--ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004254          293 FERFDV--EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (765)
Q Consensus       293 F~~fd~--~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (765)
                      ...|..  +.||.|++|.||+|+.  +|+.||||+.+.....                                      
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--------------------------------------   68 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKA--------------------------------------   68 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHHH--------------------------------------
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHHH--------------------------------------
Confidence            344443  5799999999999999  5999999988442110                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccC---CCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH
Q 004254          369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE  444 (765)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s---t~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li~  444 (765)
                               ..|....   .....+..-+.+-.++....   ...++||||++|++|.++..... ..++...+...+.+
T Consensus        69 ---------~~e~~~~---~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~q  136 (336)
T 3fhr_A           69 ---------RQEVDHH---WQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRD  136 (336)
T ss_dssp             ---------HHHHHHH---HHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHH
T ss_pred             ---------HHHHHHH---HHhcCCCChHHHHHHHhhccCCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHH
Confidence                     0011111   11122222233334443322   22589999999999988754322 23555544444333


Q ss_pred             --HHHHHHHhCCccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC
Q 004254          445 --SYLEQILSHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP  521 (765)
Q Consensus       445 --~~L~qi~~~GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~  521 (765)
                        ..+..+|..|++|+|+||+||+++.. .++.++|+|||++..........        ..+++.++++++...+..++
T Consensus       137 l~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~~~~--------~~~t~~y~aPE~~~~~~~~~  208 (336)
T 3fhr_A          137 IGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQT--------PCYTPYYVAPEVLGPEKYDK  208 (336)
T ss_dssp             HHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC------------------------------CHHHH
T ss_pred             HHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEeccccceecccccccc--------CCCCcCccChhhhCCCCCCc
Confidence              34788999999999999999999751 13569999999998776543221        23466778888775555555


Q ss_pred             CCCHHHHHHHHHHHH
Q 004254          522 TGDTTAVRRTAQFFL  536 (765)
Q Consensus       522 ~~D~~~l~~~~~~~l  536 (765)
                      ..|++++...+.+++
T Consensus       209 ~~Di~slG~il~~l~  223 (336)
T 3fhr_A          209 SCDMWSLGVIMYILL  223 (336)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHH
Confidence            678888877665554

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.50  E-value=4.9e-14  Score=146.58  Aligned_cols=184  Identities=14%  Similarity=0.100  Sum_probs=118.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ..||.|++|+||+|+.  +|+.||||+.+..-...                                    .+      .
T Consensus        28 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~------------------------------------~~------~   65 (295)
T 2clq_A           28 VVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRY------------------------------------SQ------P   65 (295)
T ss_dssp             CEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---------------------------------------H------H
T ss_pred             EEEeecCcEEEEEEEECCCCeEEEEEEccCCchHH------------------------------------HH------H
Confidence            5799999999999998  68999999875431110                                    01      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc--CCCHHHHHHH--HHHHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL--GVDRKRLGRY--AVESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~--g~d~~~ia~~--li~~~L~qi~~  452 (765)
                      +.+|+..+..+    . +++|.-..-+.......++||||++|++|.++......  ..+...+...  .+...+..+|.
T Consensus        66 ~~~e~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~  140 (295)
T 2clq_A           66 LHEEIALHKHL----K-HKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHD  140 (295)
T ss_dssp             HHHHHHHHHTC----C-CTTBCCEEEEEEETTEEEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----C-CCCEeeEeeEEEeCCcEEEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHh
Confidence            33444433333    2 23332222222334567999999999999987643321  2233433322  23345788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC--CCCCCCHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV--LVPTGDTTAVRR  530 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~--~~~~~D~~~l~~  530 (765)
                      .|++|+|+||.||+++. .++.++|+|||++..+......      .....++..++++++...+.  .++..|++++..
T Consensus       141 ~~i~H~dl~p~Nil~~~-~~~~~kl~Dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~  213 (295)
T 2clq_A          141 NQIVHRDIKGDNVLINT-YSGVLKISDFGTSKRLAGINPC------TETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGC  213 (295)
T ss_dssp             TTEECCCCSGGGEEEET-TTCCEEECCTTTCEESCC-----------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHH
T ss_pred             CCEEccCCChhhEEEEC-CCCCEEEeecccccccCCCCCc------ccccCCCccccChhhhcCCCCCCCcHHHHHHHHH
Confidence            99999999999999984 3689999999999887643211      11224566777787776543  455678888887


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       214 il~~l~  219 (295)
T 2clq_A          214 TIIEMA  219 (295)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766554

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.50  E-value=1.7e-14  Score=158.54  Aligned_cols=185  Identities=16%  Similarity=0.074  Sum_probs=116.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+......                           ..              -.
T Consensus        15 ~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---------------------------~~--------------~~   53 (396)
T 4eut_A           15 DILGQGATANVFRGRHKKTGDLFAIKVFNNISFLR---------------------------PV--------------DV   53 (396)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGS---------------------------CH--------------HH
T ss_pred             EEEEcCCCeEEEEEEECCCCcEEEEEEeccccccc---------------------------hH--------------HH
Confidence            6799999999999999  59999999985321100                           00              01


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccC-CCeEEEEeecCCCChhhhhhhhhc--CCCHHHHHHHHH--HHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYT-TPQILTMEYVPGIKINRIQSLDEL--GVDRKRLGRYAV--ESYLEQI  450 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~s-t~~vLVMEyieG~~L~d~~~l~~~--g~d~~~ia~~li--~~~L~qi  450 (765)
                      +.+|++.+.++.     +++| .+-.++.+.. ...+|||||++|++|.++......  +++...+...+.  ...+..+
T Consensus        54 ~~~E~~~l~~l~-----hpnIv~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~L  128 (396)
T 4eut_A           54 QMREFEVLKKLN-----HKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHL  128 (396)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEEECTTTCCEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-----CCCCCeEEEeeccCCCCeeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHH
Confidence            234555454442     2332 2222222222 256999999999999987543222  255555444433  3457889


Q ss_pred             HhCCccccCCCCCcEEEeec--CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc--------CCCC
Q 004254          451 LSHGFFHADPHPGNIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM--------GVLV  520 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~--~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l--------G~~~  520 (765)
                      |..|++|+|+||+||++...  .++.++|+|||++..+.......       -..++..++++++...        +..+
T Consensus       129 H~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~~~-------~~~gt~~y~aPE~~~~~~~~~~~~~~~~  201 (396)
T 4eut_A          129 RENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFV-------SLYGTEEYLHPDMYERAVLRKDHQKKYG  201 (396)
T ss_dssp             HHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGGSS-------CSSSCCTTCCHHHHHHHCC--CHHHHHH
T ss_pred             HHCCEEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCccc-------cccCCccccCHHHhhccccccccccCCC
Confidence            99999999999999998321  24569999999998876543210       1234556666666543        2223


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004254          521 PTGDTTAVRRTAQFFL  536 (765)
Q Consensus       521 ~~~D~~~l~~~~~~~l  536 (765)
                      +..|++++...+.+++
T Consensus       202 ~~~DiwSlG~il~el~  217 (396)
T 4eut_A          202 ATVDLWSIGVTFYHAA  217 (396)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHH
Confidence            4467777776665544

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.50  E-value=3.6e-14  Score=154.91  Aligned_cols=180  Identities=19%  Similarity=0.188  Sum_probs=103.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++||+|++|.||+|+.  +|+.||||+.........                                  ...      .
T Consensus        35 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~----------------------------------~~~------~   74 (367)
T 2fst_X           35 SPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSII----------------------------------HAK------R   74 (367)
T ss_dssp             EECC----CCEEEEEETTTTEEEEEEECSSTTSSHH----------------------------------HHH------H
T ss_pred             eEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHH----------------------------------HHH------H
Confidence            7899999999999998  699999998754321110                                  011      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec-----cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQ  449 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e-----~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~q  449 (765)
                      +.+|.+.+..+    .+..-+.+-.++..     .....+++|||+ |++|.++...  ..++...+...+  +-..+..
T Consensus        75 ~~~E~~~l~~l----~hpnIv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~i~~qi~~aL~~  147 (367)
T 2fst_X           75 TYRELRLLKHM----KHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKC--QKLTDDHVQFLIYQILRGLKY  147 (367)
T ss_dssp             HHHHHHHHHHC----CCTTBCCCSEEECSCSSGGGCCCCEEEEECC-CEECC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----CCCCCCcEEEEEecCCccccCCeEEEEeccc-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHH
Confidence            23444444443    22222233333321     124569999999 6778776432  334544443333  2334788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAV  528 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l  528 (765)
                      +|..|++|+|+||+||+++.  ++.++|+|||++.........         ..++..++++++... ...+...|++++
T Consensus       148 LH~~givH~Dlkp~NIll~~--~~~~kL~DFG~a~~~~~~~~~---------~~~t~~y~aPE~~~~~~~~~~~~Diwsl  216 (367)
T 2fst_X          148 IHSADIIHRDLKPSNLAVNE--DCELKILDFGLARHTADEMTG---------YVATRWYRAPEIMLNWMHYNQTVDIWSV  216 (367)
T ss_dssp             HHHTTCCCCCCCGGGEEECT--TCCEEECC------------------------CCCTTCCHHHHTTCCSCCTTHHHHHH
T ss_pred             HHHCCeeeCCCCHhhEEECC--CCCEEEeeccccccccccCCC---------cCcCcCccChHHHcCCcCCCchhhHHHH
Confidence            99999999999999999985  889999999999876543211         234566777777654 456677899999


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      ...+.+++
T Consensus       217 G~il~ell  224 (367)
T 2fst_X          217 GCIMAELL  224 (367)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88776665

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.50  E-value=4e-14  Score=147.86  Aligned_cols=186  Identities=10%  Similarity=0.019  Sum_probs=121.6

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||+|++|+||+|+.  +|+.||+|+........                                 .+..+      
T Consensus        20 ~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~---------------------------------~~~~~------   60 (294)
T 2rku_A           20 GRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLK---------------------------------PHQRE------   60 (294)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCS---------------------------------HHHHH------
T ss_pred             EEEEeecCCEEEEEEEECCCCceEEEEEechhhccC---------------------------------HHHHH------
Confidence            37899999999999999  58999999874432110                                 00111      


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      .+.+|...+..+    . +++|.-..-+.......+++|||++|++|.++... ...++...+...+.  -..+..+|..
T Consensus        61 ~~~~e~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~  134 (294)
T 2rku_A           61 KMSMEISIHRSL----A-HQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKR-RKALTEPEARYYLRQIVLGCQYLHRN  134 (294)
T ss_dssp             HHHHHHHHHHTC----C-CTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC----C-CCCEeeeeeeeccCCEEEEEEecCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            233444444433    2 23332222222334557999999999999886532 23355554444333  3347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||.||+++.  +++++|+|||++..+......      .....++..+++++.......+...|++++...+.
T Consensus       135 ~i~H~dl~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~  206 (294)
T 2rku_A          135 RVIHRDLKLGNLFLNE--DLEVKIGDFGLATKVEYDGER------KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMY  206 (294)
T ss_dssp             TEECCCCCGGGEEECT--TCCEEECCCTTCEECCSTTCC------BCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHH
T ss_pred             CccccCCChHhEEEcC--CCCEEEEeccCceecccCccc------cccccCCCCcCCcchhccCCCCchhhHHHHHHHHH
Confidence            9999999999999985  889999999999876532110      01123455677777776666667789998887665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       207 ~l~  209 (294)
T 2rku_A          207 TLL  209 (294)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.50  E-value=5.5e-14  Score=150.41  Aligned_cols=185  Identities=15%  Similarity=0.132  Sum_probs=117.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.++.....                                   .      ..+
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~------~~~   55 (353)
T 2b9h_A           17 SLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPL-----------------------------------F------ALR   55 (353)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHH-----------------------------------H------HHH
T ss_pred             eEEcCCCCeEEEEEEECCCCcEEEEEeecccccch-----------------------------------H------HHH
Confidence            6899999999999998  59999999885532111                                   0      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeec-------cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWE-------YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYL  447 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e-------~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L  447 (765)
                      +.+|++.+.++.     +++  +++++.-       .....+++|||++| .|.++..  ...++...+...+.  ...+
T Consensus        56 ~~~E~~~l~~l~-----h~~--iv~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~--~~~~~~~~~~~~~~qi~~~L  125 (353)
T 2b9h_A           56 TLREIKILKHFK-----HEN--IITIFNIQRPDSFENFNEVYIIQELMQT-DLHRVIS--TQMLSDDHIQYFIYQTLRAV  125 (353)
T ss_dssp             HHHHHHHHHHCC-----CTT--BCCEEEECCCSCSTTCCCEEEEECCCSE-EHHHHHH--HCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCc-----CCC--cCCeeeeecccccCccceEEEEEeccCc-cHHHHHh--hcCCCHHHHHHHHHHHHHHH
Confidence            344555554442     232  2233321       12557999999986 6766543  23455554444333  3447


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHH----HHHHhhcCHHHHHHHHHHc-CCCCCC
Q 004254          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEA----FYGIYEKDADKVLQAMVQM-GVLVPT  522 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l----~~ai~~~D~~~i~~~l~~l-G~~~~~  522 (765)
                      ..+|..|++|+|+||+||+++.  ++.++|+|||++..+...........    -..-..++..++++++... +..++.
T Consensus       126 ~~LH~~~ivH~Dlkp~Nil~~~--~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  203 (353)
T 2b9h_A          126 KVLHGSNVIHRDLKPSNLLINS--NCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRA  203 (353)
T ss_dssp             HHHHHTTEECSCCCGGGEEECT--TCCEEECCCTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHH
T ss_pred             HHHHHCCeecCCCCHHHeEEcC--CCcEEEEecccccccccccccccCccccccchhhccccccccCCeeeccCCCccch
Confidence            8899999999999999999985  88999999999998875432211100    0001234667788887654 445666


Q ss_pred             CCHHHHHHHHHHHH
Q 004254          523 GDTTAVRRTAQFFL  536 (765)
Q Consensus       523 ~D~~~l~~~~~~~l  536 (765)
                      .|++++...+.+++
T Consensus       204 ~Di~slG~il~~l~  217 (353)
T 2b9h_A          204 MDVWSCGCILAELF  217 (353)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            79999887666554

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.50  E-value=4e-14  Score=158.20  Aligned_cols=190  Identities=16%  Similarity=0.106  Sum_probs=109.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.........                                        ..-.
T Consensus        59 ~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~----------------------------------------~~~~   98 (458)
T 3rp9_A           59 HLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLI----------------------------------------DCKR   98 (458)
T ss_dssp             CC-------CEEEEEECC--CEEEEEEECSTTSSHH----------------------------------------HHHH
T ss_pred             eEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHH----------------------------------------HHHH
Confidence            6899999999999998  699999998744322110                                        0012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee----ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW----EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  450 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~----e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi  450 (765)
                      +.+|++.+.++.    +..-|.+-.++.    +.....++||||++| .|.++... ...++...+...+  +-..++.+
T Consensus        99 ~~~E~~~l~~l~----h~niv~l~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~-~~~l~~~~~~~~~~qi~~aL~~L  172 (458)
T 3rp9_A           99 ILREIAILNRLN----HDHVVKVLDIVIPKDVEKFDELYVVLEIADS-DFKKLFRT-PVYLTELHIKTLLYNLLVGVKYV  172 (458)
T ss_dssp             HHHHHHHHHHCC----CTTBCCEEEECCCSCTTTCCCEEEEECCCSE-EHHHHHHS-SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC----CCCCCceEEEEecCCcccCceEEEEEecccc-chhhhccc-CCCCCHHHHHHHHHHHHHHHHHH
Confidence            344555555442    222222222221    112457999999875 56554321 2234444443333  23458889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhH-------------HH---------HHHHHHHHhhcCHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR-------------EG---------LLEAFYGIYEKDADK  508 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r-------------~~---------l~~l~~ai~~~D~~~  508 (765)
                      |..|++|+|+||+|||++.  ++.++|+|||++..++....             ..         .... ..-..++..+
T Consensus       173 H~~~iiHrDlKp~NILl~~--~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gt~~Y  249 (458)
T 3rp9_A          173 HSAGILHRDLKPANCLVNQ--DCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQ-LTGHVVTRWY  249 (458)
T ss_dssp             HHTTCBCCCCCGGGEEECT--TCCEEECCCTTCBCTTSCTTCCCCCC----------------------------CCCTT
T ss_pred             HhCCcCCCCCChhhEEECC--CCCEeecccccchhccCccccccccccCcccccccccccccccccccc-ccCCcccccc
Confidence            9999999999999999986  88999999999987653210             00         0001 1112346678


Q ss_pred             HHHHHHH-cCCCCCCCCHHHHHHHHHHHHH
Q 004254          509 VLQAMVQ-MGVLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       509 i~~~l~~-lG~~~~~~D~~~l~~~~~~~l~  537 (765)
                      ++++++. .+..+...|++++...+.+++.
T Consensus       250 ~aPE~~~~~~~~~~~~DiwSlG~il~ellt  279 (458)
T 3rp9_A          250 RAPELILLQENYTEAIDVWSIGCIFAELLN  279 (458)
T ss_dssp             CCHHHHTTCCCCCTHHHHHHHHHHHHHHHT
T ss_pred             cChHHhhCCCCCCcHhHHHHHHHHHHHHHH
Confidence            8888763 4446777899999988877763

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.50  E-value=1.5e-14  Score=150.84  Aligned_cols=189  Identities=15%  Similarity=0.071  Sum_probs=108.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+........                                   .      .-+
T Consensus        21 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~------~~~   59 (303)
T 2vwi_A           21 EVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQT-----------------------------------S------MDE   59 (303)
T ss_dssp             EECC---CCCEEEEEC----CEEEEECCC---------------------------------------------------
T ss_pred             heeccccceEEEEEEECCCCcEEEEEEEEhhhcch-----------------------------------h------HHH
Confidence            7899999999999998  69999999874321100                                   0      001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-------hcCCCHHHHHHHHH--HHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-------ELGVDRKRLGRYAV--ESYL  447 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-------~~g~d~~~ia~~li--~~~L  447 (765)
                      +.+|+..+.+    +. +++|.-..-+.......++||||++|++|.++....       ...++...+...+.  ...+
T Consensus        60 ~~~e~~~l~~----l~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l  134 (303)
T 2vwi_A           60 LLKEIQAMSQ----CH-HPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGL  134 (303)
T ss_dssp             ------CCCC----CC-CTTBCCEEEEEESSSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhh----cC-CCCEeeEEEEEeecCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHH
Confidence            2233332222    11 233222222223456789999999999999865421       12244444443332  2347


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHH
Q 004254          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTT  526 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~  526 (765)
                      ..+|..|++|+|+||.||+++.  ++.++|+|||++..+.......- ........++..++++++... ...++..|++
T Consensus       135 ~~lH~~~i~H~dl~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~  211 (303)
T 2vwi_A          135 EYLHKNGQIHRDVKAGNILLGE--DGSVQIADFGVSAFLATGGDITR-NKVRKTFVGTPCWMAPEVMEQVRGYDFKADIW  211 (303)
T ss_dssp             HHHHHTTCCCCCCSGGGEEECT--TCCEEECCCHHHHHCC----------------CCCTTCCHHHHHHHHCCCTHHHHH
T ss_pred             HHHHhCCCCCCCCChhhEEEcC--CCCEEEEeccchheeccCCCccc-hhhhcccCCCccccCHHHhccccCCCchhhHH
Confidence            8899999999999999999985  88999999999987754321110 001111234556677776654 3456678999


Q ss_pred             HHHHHHHHHH
Q 004254          527 AVRRTAQFFL  536 (765)
Q Consensus       527 ~l~~~~~~~l  536 (765)
                      ++...+.+++
T Consensus       212 slG~il~~l~  221 (303)
T 2vwi_A          212 SFGITAIELA  221 (303)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9887766554

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.50  E-value=1.2e-13  Score=145.63  Aligned_cols=184  Identities=13%  Similarity=0.090  Sum_probs=121.8

Q ss_pred             ccccccceeEEEEEEe---CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL---KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l---~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      +.||+|++|.||+|+.   +|+.||||+.+..-                                     ...+      
T Consensus        20 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-------------------------------------~~~~------   56 (339)
T 1z57_A           20 DTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-------------------------------------RYCE------   56 (339)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-------------------------------------HHHH------
T ss_pred             EEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-------------------------------------chhH------
Confidence            6899999999999987   58999999985321                                     0111      


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHH--HHHHHHH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAV--ESYLEQI  450 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li--~~~L~qi  450 (765)
                      .+.+|.+.+..+.+.- ......+++++.  +.....++||||+ |+++.+...... ..++...+...+.  -..+..+
T Consensus        57 ~~~~e~~~l~~l~~~~-~~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~l  134 (339)
T 1z57_A           57 AARSEIQVLEHLNTTD-PNSTFRCVQMLEWFEHHGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFL  134 (339)
T ss_dssp             HHHHHHHHHHHHHHHC-TTCTTCBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcC-CCCceeeEeeecccccCCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            2234444444444321 112223344433  3345679999999 777777543222 2345444444333  3347889


Q ss_pred             HhCCccccCCCCCcEEEeecC-----------------CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVN-----------------GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~-----------------~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l  513 (765)
                      |..|++|+|+||+||+++...                 ++.++|+|||++...+....         ...++..++++++
T Consensus       135 H~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~---------~~~gt~~y~aPE~  205 (339)
T 1z57_A          135 HSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHHS---------TLVSTRHYRAPEV  205 (339)
T ss_dssp             HHTTEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSCCC---------SSCSCGGGCCHHH
T ss_pred             HHCCCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCccccc---------cccCCccccChHH
Confidence            999999999999999997522                 56799999999987654321         1245777888888


Q ss_pred             HHcCCCCCCCCHHHHHHHHHHHH
Q 004254          514 VQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       514 ~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ...+..++..|++++...+.+++
T Consensus       206 ~~~~~~~~~~Di~slG~il~el~  228 (339)
T 1z57_A          206 ILALGWSQPCDVWSIGCILIEYY  228 (339)
T ss_dssp             HTTSCCCTHHHHHHHHHHHHHHH
T ss_pred             hhCCCCCcchhhHHHHHHHHHHH
Confidence            87666677789999987766554

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.50  E-value=4.2e-14  Score=145.84  Aligned_cols=184  Identities=18%  Similarity=0.150  Sum_probs=113.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.++.....                   .       +       ..      -.
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-------------------~-------~-------~~------~~   57 (276)
T 2h6d_A           17 DTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRS-------------------L-------D-------VV------GK   57 (276)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH-------------------T-------T-------CH------HH
T ss_pred             eeecCCCCeEEEEEEECCCCceEEEEEeccccccc-------------------h-------h-------HH------HH
Confidence            7899999999999998  59999999874321000                   0       0       00      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +.+|+..+..+    . ++++.-..-+.......++||||++|++|.++.... ..++...+...+.  ...+..+|..|
T Consensus        58 ~~~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~  131 (276)
T 2h6d_A           58 IKREIQNLKLF----R-HPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKH-GRVEEMEARRLFQQILSAVDYCHRHM  131 (276)
T ss_dssp             HHHHHHHHHTC----C-CTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcC----C-CCCEeEEEEEEecCCeEEEEEeccCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34455544433    2 233322222223356679999999999999875422 2344444433332  23478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~-~~~~D~~~l~~~~~  533 (765)
                      ++|+|+||.||+++.  ++.++|+|||++..+.......       ...++..+++++....... ++..|++++...+.
T Consensus       132 i~H~dl~p~Nil~~~--~~~~~l~dfg~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~  202 (276)
T 2h6d_A          132 VVHRDLKPENVLLDA--HMNAKIADFGLSNMMSDGEFLR-------TSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILY  202 (276)
T ss_dssp             SSCCCCCGGGEEECT--TSCEEECCCCGGGCCCC--------------------CCTGGGTTSCCCHHHHHHHHHHHHHH
T ss_pred             CccCCCChhhEEECC--CCCEEEeecccccccCCCccee-------cccCCccccCHHHHcCCCCCCccchHHHHHHHHH
Confidence            999999999999985  8899999999998876543211       1124555666666544332 34568888876655


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       203 ~l~  205 (276)
T 2h6d_A          203 ALL  205 (276)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.49  E-value=1.4e-13  Score=149.70  Aligned_cols=181  Identities=16%  Similarity=0.172  Sum_probs=111.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                  ....      .
T Consensus        31 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~------~   70 (371)
T 2xrw_A           31 KPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQ----------------------------------THAK------R   70 (371)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSH----------------------------------HHHH------H
T ss_pred             eeeEecCCEEEEEEEECCCCceEEEEEeccccCCh----------------------------------HHHH------H
Confidence            7899999999999998  69999999885432111                                  0011      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC-----CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT-----TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQ  449 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s-----t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~q  449 (765)
                      +.+|+..+..+    .+..-+.+-.++....     ...++||||++|. +.+...   ..++...+...+  +-..+..
T Consensus        71 ~~~E~~~l~~l----~hpniv~~~~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~---~~~~~~~~~~i~~qi~~al~~  142 (371)
T 2xrw_A           71 AYRELVLMKCV----NHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDAN-LCQVIQ---MELDHERMSYLLYQMLCGIKH  142 (371)
T ss_dssp             HHHHHHHHHHC----CCTTBCCEEEEECSCCSTTTCCEEEEEEECCSEE-HHHHHH---SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCccceEEeeccccccccccceEEEEEcCCCC-HHHHHh---hccCHHHHHHHHHHHHHHHHH
Confidence            23444444433    2222223333332211     2469999999984 444332   234554444333  2334788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..|++|+|+||+||+++.  ++.++|+|||++...+.....       ....++..++++++..-+..++..|++++.
T Consensus       143 lH~~~ivH~Dlkp~NIl~~~--~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG  213 (371)
T 2xrw_A          143 LHSAGIIHRDLKPSNIVVKS--DCTLKILDFGLARTAGTSFMM-------TPYVVTRYYRAPEVILGMGYKENVDIWSVG  213 (371)
T ss_dssp             HHHTTCCCSCCCGGGEEECT--TSCEEECCCCC-----------------------CTTCCHHHHTTCCCCTTHHHHHHH
T ss_pred             HHHCCeecccCCHHHEEEcC--CCCEEEEEeeccccccccccc-------CCceecCCccCHHHhcCCCCCchHhHHHHH
Confidence            99999999999999999985  889999999999877543211       112345667788887766677788999998


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       214 ~il~el~  220 (371)
T 2xrw_A          214 CIMGEMI  220 (371)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776654

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.49  E-value=4.6e-14  Score=150.94  Aligned_cols=185  Identities=14%  Similarity=0.109  Sum_probs=114.4

Q ss_pred             ccccccceeEEEEEEe--CCeE----EEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEE----VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~----VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +.||+|++|.||+|+.  +|+.    |++|..+......                           .             
T Consensus        21 ~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~---------------------------~-------------   60 (327)
T 3lzb_A           21 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK---------------------------A-------------   60 (327)
T ss_dssp             EEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCC---------------------------C-------------
T ss_pred             EEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHH---------------------------H-------------
Confidence            7899999999999998  5665    4666654322111                           0             


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi  450 (765)
                       .-.+.+|+..+.++    .+..-+.+-.++  .....+++|||++|++|.+........++...+...+.+  ..+..+
T Consensus        61 -~~~~~~E~~~l~~l----~hp~iv~~~~~~--~~~~~~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~L  133 (327)
T 3lzb_A           61 -NKEILDEAYVMASV----DNPHVCRLLGIC--LTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYL  133 (327)
T ss_dssp             -HHHHHHHHHHHTTC----CBTTBCCCCEEE--ESSSEEEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhC----CCCCeeEEEEEE--ecCCceEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence             01233444444333    222222222222  235578999999999999876544444555555444333  348889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      |..|++|+|+||+||+++.  ++.++|+|||++..+.........    ........+++++...-+..++..|++++..
T Consensus       134 H~~~ivH~Dikp~NIl~~~--~~~~kL~DfG~a~~~~~~~~~~~~----~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~  207 (327)
T 3lzb_A          134 EDRRLVHRDLAARNVLVKT--PQHVKITDFGLAKLLGAEEKEYHA----EGGKVPIKWMALESILHRIYTHQSDVWSYGV  207 (327)
T ss_dssp             HHTTCCCSCCCGGGEEEEE--TTEEEECCTTC--------------------CCCGGGSCHHHHHHCCCCHHHHHHHHHH
T ss_pred             hhCCCcCCCCCHHHEEEcC--CCCEEEccCcceeEccCccccccc----cCCCccccccCHHHHcCCCCChHHHHHHHHH
Confidence            9999999999999999986  889999999999887654332211    1123345677888777666777789999887


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       208 il~ell  213 (327)
T 3lzb_A          208 TVWELM  213 (327)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766554

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.49  E-value=3.3e-14  Score=149.39  Aligned_cols=182  Identities=15%  Similarity=0.121  Sum_probs=117.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|+||+|+.  +|+.||||+.+......                                          +-.
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~------------------------------------------~~~   52 (304)
T 2jam_A           15 EVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFR------------------------------------------DSS   52 (304)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEECC------------------------------------------------H
T ss_pred             eeccCCCCceEEEEEECCCCCEEEEEEEecccccc------------------------------------------hHH
Confidence            6899999999999998  69999999885431100                                          002


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +.+|...+..+    . ++++.-..-+.......+++|||++|++|.+.... ...++...+...+.  -..+..+|..|
T Consensus        53 ~~~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~  126 (304)
T 2jam_A           53 LENEIAVLKKI----K-HENIVTLEDIYESTTHYYLVMQLVSGGELFDRILE-RGVYTEKDASLVIQQVLSAVKYLHENG  126 (304)
T ss_dssp             HHHHHHHHHHC----C-CTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CCCeeehhhhcccCCEEEEEEEcCCCccHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33455444443    2 23332222233445667999999999999886532 22345444443332  33478899999


Q ss_pred             ccccCCCCCcEEEee-cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~-~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|+||.||++.. ..++.++|+|||++..........        ..+++.+++++....+..++..|++++...+.
T Consensus       127 i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~  198 (304)
T 2jam_A          127 IVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMST--------ACGTPGYVAPEVLAQKPYSKAVDCWSIGVITY  198 (304)
T ss_dssp             CCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBTTHH--------HHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCcccc--------ccCCCCccChHHhccCCCCchhhHHHHHHHHH
Confidence            999999999999932 136889999999987665432211        12455566666655554555678888877665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       199 ~l~  201 (304)
T 2jam_A          199 ILL  201 (304)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.49  E-value=1e-13  Score=146.34  Aligned_cols=189  Identities=12%  Similarity=0.046  Sum_probs=107.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+..+.-...                                          .-.
T Consensus        34 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~------------------------------------------~~~   71 (337)
T 3ll6_A           34 RVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEK------------------------------------------NRA   71 (337)
T ss_dssp             EEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHH------------------------------------------HHH
T ss_pred             EEEccCCceEEEEEEECCCCcEEEEEEecCCchHH------------------------------------------HHH
Confidence            6899999999999998  69999999874432111                                          012


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeee-------ccCCCeEEEEeecCCCChhhhhhh-h-hcCCCHHHHHHHHH--H
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFW-------EYTTPQILTMEYVPGIKINRIQSL-D-ELGVDRKRLGRYAV--E  444 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~-------e~st~~vLVMEyieG~~L~d~~~l-~-~~g~d~~~ia~~li--~  444 (765)
                      +.+|...+.++.    ++++| .+-.++.       ......+++|||++| +|.+.... . ...++...+...+.  .
T Consensus        72 ~~~e~~~l~~l~----~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~g-~L~~~l~~~~~~~~~~~~~~~~i~~qi~  146 (337)
T 3ll6_A           72 IIQEVCFMKKLS----GHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKG-QLVEFLKKMESRGPLSCDTVLKIFYQTC  146 (337)
T ss_dssp             HHHHHHHHHHHT----TSTTBCCEEEEEEECTTTSTTSSEEEEEEEECCSE-EHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc----cCCChhhccccccccccccccCCceEEEEEEecCC-CHHHHHHHhhccCCCCHHHHHHHHHHHH
Confidence            344555555543    22322 2211211       112335999999986 56554322 2 22355554444433  3


Q ss_pred             HHHHHHHhCC--ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHH------HHHhhcCHHHHHHHHHH-
Q 004254          445 SYLEQILSHG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAF------YGIYEKDADKVLQAMVQ-  515 (765)
Q Consensus       445 ~~L~qi~~~G--ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~------~ai~~~D~~~i~~~l~~-  515 (765)
                      ..+..+|..|  ++|+|+||.||+++.  ++.++|+|||++..++..........-      .....+++.++++++.. 
T Consensus       147 ~~l~~LH~~~~~ivH~Dikp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~  224 (337)
T 3ll6_A          147 RAVQHMHRQKPPIIHRDLKVENLLLSN--QGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDL  224 (337)
T ss_dssp             HHHHHHHTSSSCCBCCCCCGGGCEECT--TSCEEBCCCTTCBCCSSCC-------------------------------C
T ss_pred             HHHHHHHhCCCCEEEccCCcccEEECC--CCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhc
Confidence            3488899999  999999999999985  889999999999887654322110000      00123567788888874 


Q ss_pred             --cCCCCCCCCHHHHHHHHHHHH
Q 004254          516 --MGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       516 --lG~~~~~~D~~~l~~~~~~~l  536 (765)
                        -+..++..|++++...+.+++
T Consensus       225 ~~~~~~~~~~Dv~slG~il~el~  247 (337)
T 3ll6_A          225 YSNFPIGEKQDIWALGCILYLLC  247 (337)
T ss_dssp             CTTSCSSHHHHHHHHHHHHHHHH
T ss_pred             cccCCCChHHhHHHHHHHHHHHH
Confidence              333455678888887665554

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.49  E-value=2.4e-13  Score=143.12  Aligned_cols=137  Identities=12%  Similarity=0.012  Sum_probs=93.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|+||+|+.  +|+.||||+.++.....                                 .+..      -.
T Consensus        37 ~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~---------------------------------~~~~------~~   77 (286)
T 3uqc_A           37 IFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLP---------------------------------DDVL------QE   77 (286)
T ss_dssp             EEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSC---------------------------------HHHH------HH
T ss_pred             EEEcccCCeEEEEEEecCCCceEEEEEECcccccC---------------------------------HHHH------HH
Confidence            7899999999999999  49999999997653221                                 0001      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      |.+|++.+.++     .+++|.-..-+.+..+..++||||++|++|.++..   .+.....+...+.  ...+.++|..|
T Consensus        78 ~~~e~~~l~~l-----~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~---~~~~~~~~~~i~~ql~~aL~~lH~~g  149 (286)
T 3uqc_A           78 TLSRTLRLSRI-----DKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVAD---TSPSPVGAIRAMQSLAAAADAAHRAG  149 (286)
T ss_dssp             HHHHHHHHHTC-----CCTTBCCEEEEEEETTEEEEEEECCCEEEHHHHHT---TCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcC-----CCCCcceeeEEEEECCcEEEEEEecCCCCHHHHHh---cCCChHHHHHHHHHHHHHHHHHHHCC
Confidence            34455444332     23333222222344566799999999999998753   2344444444332  23478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeeccee
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMG  484 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~  484 (765)
                      ++|+|+||+||++++  +|.++|.++|.+.
T Consensus       150 ivH~Dikp~NIll~~--~g~~kl~~~~~~~  177 (286)
T 3uqc_A          150 VALSIDHPSRVRVSI--DGDVVLAYPATMP  177 (286)
T ss_dssp             CCCCCCSGGGEEEET--TSCEEECSCCCCT
T ss_pred             CccCCCCcccEEEcC--CCCEEEEeccccC
Confidence            999999999999986  8899998777654

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.49  E-value=2.1e-14  Score=156.71  Aligned_cols=192  Identities=15%  Similarity=0.080  Sum_probs=122.4

Q ss_pred             cccccc--ceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          299 EPIAAA--SLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       299 ~PIgsa--SiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      +.||.|  ++|.||+|+.  +|+.||||+.+......                                  +..+     
T Consensus        31 ~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~-----   71 (389)
T 3gni_B           31 TVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSN----------------------------------EMVT-----   71 (389)
T ss_dssp             EEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCH----------------------------------HHHH-----
T ss_pred             ecccCCcCCceEEEEEEEcCCCCEEEEEEecccccCh----------------------------------HHHH-----
Confidence            689999  9999999999  59999999885432111                                  1111     


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHH--HHHHHHHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAV--ESYLEQIL  451 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~li--~~~L~qi~  451 (765)
                       .+.+|++.+.++    . +++|.-..-+.......++||||++|++|.++.... ...++...+...+.  -..+..+|
T Consensus        72 -~~~~E~~~l~~l----~-h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH  145 (389)
T 3gni_B           72 -FLQGELHVSKLF----N-HPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIH  145 (389)
T ss_dssp             -HHHHHHHHHHHC----C-CTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhC----C-CCCCCcEeEEEEECCEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence             233444444443    2 233322222223456679999999999999875432 23455554444333  24478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhH-HHHHHHHHHHhhcCHHHHHHHHHHc--CCCCCCCCHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR-EGLLEAFYGIYEKDADKVLQAMVQM--GVLVPTGDTTAV  528 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r-~~l~~l~~ai~~~D~~~i~~~l~~l--G~~~~~~D~~~l  528 (765)
                      ..|++|+|+||+||+++.  ++.++|+|||.+..+..... .....-......++..++++++...  ...++..|++++
T Consensus       146 ~~~ivHrDlkp~NIll~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~Diwsl  223 (389)
T 3gni_B          146 HMGYVHRSVKASHILISV--DGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSV  223 (389)
T ss_dssp             HTTEECCCCSGGGEEECT--TCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHH
T ss_pred             hCCeecCCCCHHHEEEcC--CCCEEEcccccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHH
Confidence            999999999999999985  88999999998765432110 0000000000124556778888765  345667799999


Q ss_pred             HHHHHHHHH
Q 004254          529 RRTAQFFLN  537 (765)
Q Consensus       529 ~~~~~~~l~  537 (765)
                      ...+.+++.
T Consensus       224 G~il~el~~  232 (389)
T 3gni_B          224 GITACELAN  232 (389)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887766653

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.49  E-value=2.3e-14  Score=148.73  Aligned_cols=187  Identities=19%  Similarity=0.183  Sum_probs=112.7

Q ss_pred             ccccccceeEEEEEEe---CC--eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL---KG--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l---~G--~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||.|++|+||+|++   +|  ..||||+.++.....                                 .+.      
T Consensus        24 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~---------------------------------~~~------   64 (291)
T 1u46_A           24 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQ---------------------------------PEA------   64 (291)
T ss_dssp             EECC----CCCEEEEEECTTSCEEEEEEEC-----------------------------------------CHH------
T ss_pred             eeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCC---------------------------------HHH------
Confidence            6899999999999986   23  369999886542111                                 000      


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeec-cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e-~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi  450 (765)
                      .-++.+|++.+.++    . +++  +++++.- .....+++|||++|++|.+........++...+...+.+  ..+..+
T Consensus        65 ~~~~~~e~~~l~~l----~-h~~--i~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~l  137 (291)
T 1u46_A           65 MDDFIREVNAMHSL----D-HRN--LIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYL  137 (291)
T ss_dssp             HHHHHHHHHHHHHC----C-CTT--BCCEEEEECSSSCEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC----C-CCC--cccEEEEEccCCceeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHH
Confidence            11344555555544    2 232  2233321 234579999999999999876543334555554444333  347889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      |..|++|+|+||.||+++.  ++.++|+|||++..+.........   ......+..+++++....+..++..|++++..
T Consensus       138 H~~~i~H~dikp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  212 (291)
T 1u46_A          138 ESKRFIHRDLAARNLLLAT--RDLVKIGDFGLMRALPQNDDHYVM---QEHRKVPFAWCAPESLKTRTFSHASDTWMFGV  212 (291)
T ss_dssp             HHTTEECSCCCGGGEEEEE--TTEEEECCCTTCEECCC-CCEEEC--------CCGGGCCHHHHHHCEEEHHHHHHHHHH
T ss_pred             HhCCcccCCCchheEEEcC--CCCEEEccccccccccccccchhh---hccCCCCceeeCchhhcCCCCCchhhHHHHHH
Confidence            9999999999999999986  889999999999887543211000   01112344566777776655566778888887


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       213 il~~l~  218 (291)
T 1u46_A          213 TLWEMF  218 (291)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665554

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.49  E-value=2.7e-14  Score=151.72  Aligned_cols=181  Identities=12%  Similarity=0.122  Sum_probs=108.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+......                           ...              .
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------------------~~~--------------~   49 (317)
T 2pmi_A           11 EKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEG---------------------------TPS--------------T   49 (317)
T ss_dssp             --------CEEEEEECSSSCCEEEEEEEECCSTTC---------------------------SCH--------------H
T ss_pred             eEECCCCCEEEEEEEECCCCcEEEEEEeecccccc---------------------------cHH--------------H
Confidence            6899999999999998  59999999885432111                           000              1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhh-----cCCCHHHHHHHH--HHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDE-----LGVDRKRLGRYA--VESYL  447 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~-----~g~d~~~ia~~l--i~~~L  447 (765)
                      +.+|++.+.++    . +++  +++++.  ......+|||||++| .|.++.....     .+++...+...+  +-..+
T Consensus        50 ~~~E~~~l~~l----~-hp~--iv~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL  121 (317)
T 2pmi_A           50 AIREISLMKEL----K-HEN--IVRLYDVIHTENKLTLVFEFMDN-DLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGL  121 (317)
T ss_dssp             HHHHHHHHTTC----C-BTT--BCCEEEEECCTTEEEEEEECCCC-BHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----C-CCC--cceEEEEEEECCeEEEEEEecCC-CHHHHHHhccccccccCCCHHHHHHHHHHHHHHH
Confidence            22344333332    2 233  333333  334567999999997 6776543322     124444333322  33457


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHH
Q 004254          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTT  526 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~  526 (765)
                      ..+|..|++|+|+||+||+++.  ++.++|+|||++..+......      .....++..++++++... ...++..|++
T Consensus       122 ~~lH~~~ivH~Dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~~t~~y~aPE~~~~~~~~~~~~Diw  193 (317)
T 2pmi_A          122 AFCHENKILHRDLKPQNLLINK--RGQLKLGDFGLARAFGIPVNT------FSSEVVTLWYRAPDVLMGSRTYSTSIDIW  193 (317)
T ss_dssp             HHHHHTTEECCCCCGGGEEECT--TCCEEECCCSSCEETTSCCCC------CCCCCSCCTTCCHHHHTTCCCCCTHHHHH
T ss_pred             HHHHHCCeeeCCCChHHeEEcC--CCCEEECcCccceecCCCccc------CCCCcccccccCchHhhCCCCCCcHHHHH
Confidence            8899999999999999999985  889999999999876532110      001124566777887753 3456677999


Q ss_pred             HHHHHHHHHH
Q 004254          527 AVRRTAQFFL  536 (765)
Q Consensus       527 ~l~~~~~~~l  536 (765)
                      ++...+.+++
T Consensus       194 slG~il~el~  203 (317)
T 2pmi_A          194 SCGCILAEMI  203 (317)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9987766654

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.49  E-value=1.4e-14  Score=155.88  Aligned_cols=198  Identities=17%  Similarity=0.174  Sum_probs=118.5

Q ss_pred             ccccccceeEEEEEEe-----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||+|++|.||+|+.     ++..||||+....... ...+..+++.+.                              
T Consensus        43 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~-~~~e~~~~~~~~------------------------------   91 (345)
T 2v62_A           43 KKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGP-LFSELKFYQRVA------------------------------   91 (345)
T ss_dssp             EEC------CEEEEEESSSCGGGCCEEEEEEECC-CH-HHHHHHHHHHHC------------------------------
T ss_pred             eeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcc-hHHHHHHHHHHh------------------------------
Confidence            6899999999999998     3689999998665321 222222222110                              


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeecc------CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--H
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEY------TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--S  445 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~------st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~  445 (765)
                      .-++.+|...+..    +. ++  .+++++...      ....++||||+ |++|.++..... .++...+...+.+  .
T Consensus        92 ~~~~~~e~~~~~~----l~-h~--ni~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~  162 (345)
T 2v62_A           92 KKDCIKKWIERKQ----LD-YL--GIPLFYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLD  162 (345)
T ss_dssp             CHHHHHHHHHHHT----CS-CC--CCCCEEEEEEEESSSCEEEEEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhhcc----cc-cc--CcceeecccccccCCCcEEEEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            0122333332222    22 22  234444321      34569999999 999998754322 4555555444333  3


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHH-HHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004254          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREG-LLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (765)
Q Consensus       446 ~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~-l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D  524 (765)
                      .+..+|..|++|+|+||.||+++....+.++|+|||++..+.+..... +.........++..++++++...+..++..|
T Consensus       163 aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  242 (345)
T 2v62_A          163 VLEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSD  242 (345)
T ss_dssp             HHHHHHHTTEECSCCSGGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHH
T ss_pred             HHHHHHhCCeeCCCcCHHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhh
Confidence            478899999999999999999986223499999999998875432100 0000001124667788888888776777789


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++.-.+.+++
T Consensus       243 i~slG~il~ell  254 (345)
T 2v62_A          243 VEILGYCMLRWL  254 (345)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999987776654

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.48  E-value=1.1e-13  Score=146.19  Aligned_cols=187  Identities=20%  Similarity=0.177  Sum_probs=121.3

Q ss_pred             ccccccceeEEEEEEe---CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL---KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l---~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      +.||+|++|.||+|+.   +|+.||||+.++.....                       .   ..              .
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~-----------------------~---~~--------------~   56 (326)
T 1blx_A           17 AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE-----------------------G---MP--------------L   56 (326)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTT-----------------------S---CB--------------C
T ss_pred             eeecccccEEEEEEEecCCCCEEEEEEEeccCcccc-----------------------c---CC--------------c
Confidence            6899999999999997   48999999886432211                       0   00              0


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeee----ccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHHH--HHHH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFW----EYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAVE--SYLE  448 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~----e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~li~--~~L~  448 (765)
                      .+.+|...+..+.. +.+..-+.+-.++.    +.....++||||++| +|.++.... ..+++...+...+.+  ..+.
T Consensus        57 ~~~~e~~~l~~l~~-~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~  134 (326)
T 1blx_A           57 STIREVAVLRHLET-FEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ-DLTTYLDKVPEPGVPTETIKDMMFQLLRGLD  134 (326)
T ss_dssp             THHHHHHHHHHHHH-TCCTTBCCEEEEEEEEECSSEEEEEEEEECCSC-BHHHHHHHSCTTCSCHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhhhc-cCCCCeEeeeeeeeecccCCCceEEEEEecCCC-CHHHHHHhcccCCCCHHHHHHHHHHHHHHHH
Confidence            12233333333332 12221122222222    123456999999997 777754322 223555554444333  3478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      .+|..|++|+|+||+||+++.  ++.++|+|||++..++.....       ....++..++++++..-+...+..|++++
T Consensus       135 ~lH~~gi~H~dlkp~Nili~~--~~~~kl~Dfg~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  205 (326)
T 1blx_A          135 FLHSHRVVHRDLKPQNILVTS--SGQIKLADFGLARIYSFQMAL-------TSVVVTLWYRAPEVLLQSSYATPVDLWSV  205 (326)
T ss_dssp             HHHHTTCCCCCCCGGGEEECT--TCCEEECSCCSCCCCCGGGGG-------CCCCCCCTTCCHHHHTTCCCCTHHHHHHH
T ss_pred             HHHHCCceeccCCHHHeEEcC--CCCEEEecCcccccccCCCCc-------cccccccceeCHHHHhcCCCCcchhHHHH
Confidence            899999999999999999985  889999999999887654311       11235667778888877767777899999


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      ...+.+++
T Consensus       206 G~il~~l~  213 (326)
T 1blx_A          206 GCIFAEMF  213 (326)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87766554

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.48  E-value=8e-15  Score=151.04  Aligned_cols=183  Identities=19%  Similarity=0.213  Sum_probs=115.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|+||+|+.  +|+.||||+.++.....                                   ..+      .
T Consensus        13 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~~~------~   51 (276)
T 2yex_A           13 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-----------------------------------CPE------N   51 (276)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTT-----------------------------------HHH------H
T ss_pred             EEeecCCCcEEEEEEECCCCcEEEEEEeeeccchh-----------------------------------hhH------H
Confidence            6899999999999998  59999999885422110                                   001      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~  452 (765)
                      +.+|+..+..+    . +++  +++++.  ......++||||++|++|.+.... ...++...+...+.  ...+..+|.
T Consensus        52 ~~~e~~~l~~l----~-h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~i~~~l~~lH~  123 (276)
T 2yex_A           52 IKKEICINKML----N-HEN--VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP-DIGMPEPDAQRFFHQLMAGVVYLHG  123 (276)
T ss_dssp             HHHHHHHHHTC----C-CTT--BCCEEEEEEETTEEEEEEECCTTEEGGGGSBT-TTBCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----C-CCC--ceeeeeEEEcCCEEEEEEEecCCCcHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHh
Confidence            23344333332    2 233  333332  334566999999999999886532 22345444443332  334788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRT  531 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~-~~~~D~~~l~~~  531 (765)
                      .|++|+|+||+||+++.  ++.++|+|||++..+........    .....++..+++++....+.. ++..|++++...
T Consensus       124 ~~i~H~dl~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~i  197 (276)
T 2yex_A          124 IGITHRDIKPENLLLDE--RDNLKISDFGLATVFRYNNRERL----LNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIV  197 (276)
T ss_dssp             TTEECSCCSGGGEEECT--TCCEEECCCTTCEECEETTEECC----BCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHH
T ss_pred             CCeeccCCChHHEEEcc--CCCEEEeeCCCccccCCCcchhc----ccCCccccCccChHHHhcCCCCCCcchHHHHHHH
Confidence            99999999999999985  88999999999986643211100    001124555666666544322 345688888776


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       198 l~~l~  202 (276)
T 2yex_A          198 LTAML  202 (276)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65554

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.48  E-value=3.4e-14  Score=151.09  Aligned_cols=184  Identities=15%  Similarity=0.137  Sum_probs=117.5

Q ss_pred             ccccccceeEEEEEEe--CCeEE--EEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEV--VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~V--AVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      +.||.|++|.||+|+.  +|..+  |||+.+......                                         ..
T Consensus        31 ~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~-----------------------------------------~~   69 (327)
T 1fvr_A           31 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD-----------------------------------------DH   69 (327)
T ss_dssp             EEEECGGGCEEEEEEEEETTEEEEEEEEEEECC-----------------------------------------------
T ss_pred             eeeecCCCceEEEEEEccCCcccceeeeeeccccchH-----------------------------------------HH
Confidence            6899999999999998  57755  888775322111                                         00


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCHHHHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDRKRLG  439 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~~~ia  439 (765)
                      -.+.+|.+.+.++    .++++|.-..-+.......++||||++|++|.++.....               ..++...+.
T Consensus        70 ~~~~~E~~~l~~l----~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (327)
T 1fvr_A           70 RDFAGELEVLCKL----GHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLL  145 (327)
T ss_dssp             CHHHHHHHHHTTC----CCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHH
T ss_pred             HHHHHHHHHHHhc----cCCCchhhhceeeeeCCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHH
Confidence            1233444443332    233433322223344566799999999999998754221               134555444


Q ss_pred             HHHHH--HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC
Q 004254          440 RYAVE--SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG  517 (765)
Q Consensus       440 ~~li~--~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG  517 (765)
                      ..+.+  ..+..+|..|++|+|+||.||+++.  ++.++|+|||++...........       ......+++++....+
T Consensus       146 ~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~--~~~~kL~Dfg~~~~~~~~~~~~~-------~~~~~~y~aPE~~~~~  216 (327)
T 1fvr_A          146 HFAADVARGMDYLSQKQFIHRDLAARNILVGE--NYVAKIADFGLSRGQEVYVKKTM-------GRLPVRWMAIESLNYS  216 (327)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCSGGGEEECG--GGCEEECCTTCEESSCEECCC-----------CCTTTCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhCCccCCCCccceEEEcC--CCeEEEcccCcCccccccccccC-------CCCCccccChhhhccc
Confidence            44333  3478899999999999999999986  78999999999975543221111       1234456677777666


Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q 004254          518 VLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       518 ~~~~~~D~~~l~~~~~~~l  536 (765)
                      ..++..|++++...+.+++
T Consensus       217 ~~~~~~Di~slG~il~ell  235 (327)
T 1fvr_A          217 VYTTNSDVWSYGVLLWEIV  235 (327)
T ss_dssp             EECHHHHHHHHHHHHHHHH
T ss_pred             cCCchhcchHHHHHHHHHH
Confidence            5667779998887665554

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.48  E-value=5.3e-14  Score=158.33  Aligned_cols=186  Identities=16%  Similarity=0.117  Sum_probs=122.1

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||.|++|.||+|+.  +|+.||||+........                         ..+.              -
T Consensus        31 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~-------------------------~~~~--------------~   71 (484)
T 3nyv_A           31 QRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQ-------------------------KTDK--------------E   71 (484)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCB-------------------------SSCH--------------H
T ss_pred             eeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhccc-------------------------chHH--------------H
Confidence            36899999999999999  69999999874321100                         0011              1


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      .+.+|++.+.++     ++++|.-..-+.+.....++||||++|++|.+... ....++...+...+.  -..+..+|..
T Consensus        72 ~~~~E~~~l~~l-----~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~  145 (484)
T 3nyv_A           72 SLLREVQLLKQL-----DHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEII-SRKRFSEVDAARIIRQVLSGITYMHKN  145 (484)
T ss_dssp             HHHHHHHHHTTC-----CCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH-TCSCCBHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC-----CCCCCCcEEEEEEeCCEEEEEEecCCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            233444444333     23333222222233556799999999999987543 223344444443332  3447889999


Q ss_pred             CccccCCCCCcEEEee-cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~-~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      |++|+|+||.||+++. ..++.++|+|||++..++......       -..+++.++++++.. |..++..|++++...+
T Consensus       146 ~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~-------~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il  217 (484)
T 3nyv_A          146 KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMK-------DKIGTAYYIAPEVLH-GTYDEKCDVWSTGVIL  217 (484)
T ss_dssp             TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCSHH-------HHTTGGGTCCHHHHH-TCCCTHHHHHHHHHHH
T ss_pred             CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccccccc-------cCCCCccccCceeec-CCCCCcceeHHHHHHH
Confidence            9999999999999953 136789999999998776543211       123567778888775 4567778999998777


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       218 ~~ll  221 (484)
T 3nyv_A          218 YILL  221 (484)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.48  E-value=5.2e-14  Score=150.36  Aligned_cols=191  Identities=14%  Similarity=0.100  Sum_probs=115.9

Q ss_pred             hcccC-cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004254          293 FERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (765)
Q Consensus       293 F~~fd-~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (765)
                      +..|. .+.||+|++|.||+|+.  +|+.||||+.+......                                  +...
T Consensus        33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~   78 (329)
T 3gbz_A           33 IDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEE----------------------------------GVPG   78 (329)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC-----------------------------------------
T ss_pred             hhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEccccccc----------------------------------ccch
Confidence            34444 37899999999999998  69999999985432111                                  0000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHH
Q 004254          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYL  447 (765)
Q Consensus       370 ~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L  447 (765)
                            .+.+|++.+.++    . +++|.-..-+.......+|||||++| +|.++... ...++...+...+  +-..+
T Consensus        79 ------~~~~E~~~l~~l----~-h~~iv~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~-~~~~~~~~~~~i~~ql~~~l  145 (329)
T 3gbz_A           79 ------TAIREVSLLKEL----Q-HRNIIELKSVIHHNHRLHLIFEYAEN-DLKKYMDK-NPDVSMRVIKSFLYQLINGV  145 (329)
T ss_dssp             -------CHHHHHHGGGC----C-CTTBCCEEEEEEETTEEEEEEECCSE-EHHHHHHH-CTTCCHHHHHHHHHHHHHHH
T ss_pred             ------hHHHHHHHHHHc----C-CCCcceEEEEEecCCEEEEEEecCCC-CHHHHHhh-cCCCCHHHHHHHHHHHHHHH
Confidence                  122344433332    2 23332222223345667999999997 67665432 2234544443333  23347


Q ss_pred             HHHHhCCccccCCCCCcEEEeec---CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCC
Q 004254          448 EQILSHGFFHADPHPGNIAVDDV---NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTG  523 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~---~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~  523 (765)
                      ..+|..|++|+|+||+||+++..   .++.++|+|||++..++......      ....++..++++++..-+ ..++..
T Consensus       146 ~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~~  219 (329)
T 3gbz_A          146 NFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQF------THEIITLWYRPPEILLGSRHYSTSV  219 (329)
T ss_dssp             HHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----------------CCTTCCHHHHTTCCCCCTHH
T ss_pred             HHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCccccc------CCCcCCccccCHHHhcCCCCCCcHH
Confidence            88999999999999999999631   24569999999998775432211      111235667778877543 356778


Q ss_pred             CHHHHHHHHHHHH
Q 004254          524 DTTAVRRTAQFFL  536 (765)
Q Consensus       524 D~~~l~~~~~~~l  536 (765)
                      |++++...+.+++
T Consensus       220 DiwslG~il~ell  232 (329)
T 3gbz_A          220 DIWSIACIWAEML  232 (329)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999987766554

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.48  E-value=1.1e-13  Score=148.93  Aligned_cols=193  Identities=15%  Similarity=0.144  Sum_probs=115.1

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|++|.||+|+. +|+.||||+.++.....-                        ..+... -....+      .+
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~------------------------~~~~~~-~~~~~~------~~   76 (362)
T 3pg1_A           28 RFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGR------------------------TVNILS-DSFLCK------RV   76 (362)
T ss_dssp             EEEEEETTEEEEEEECTTSCEEEEEEECEECCTTS------------------------CEEGGG-SHHHHH------HH
T ss_pred             EEeccCCCEEEEEEECCCCCeEEEEeccccCCccc------------------------hhhhhh-hhhHHH------HH
Confidence            7899999999999998 799999998865332210                        000000 001111      34


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeecc----CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHH
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEY----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQIL  451 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~----st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~  451 (765)
                      .+|++.+.++.    +..-+.+-.++...    ....++||||++| .+.+........++...+...+.  ...+..+|
T Consensus        77 ~~E~~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH  151 (362)
T 3pg1_A           77 LREIRLLNHFH----HPNILGLRDIFVHFEEPAMHKLYLVTELMRT-DLAQVIHDQRIVISPQHIQYFMYHILLGLHVLH  151 (362)
T ss_dssp             HHHHHHHHHCC----CTTBCCCSEEEEECCTTTCCEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCC----CcCccceeeeEEeccCCCcceEEEEEccCCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence            55555555542    22223333333222    2245999999997 45554332333455555444332  34478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRR  530 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~  530 (765)
                      ..|++|+|+||.||+++.  ++.++|+|||++..........       ...++..++++++..- +..++..|++++..
T Consensus       152 ~~~ivH~Dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~~~-------~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~  222 (362)
T 3pg1_A          152 EAGVVHRDLHPGNILLAD--NNDITICDFNLAREDTADANKT-------HYVTHRWYRAPELVMQFKGFTKLVDMWSAGC  222 (362)
T ss_dssp             HTTCCCCCCCGGGEEECT--TCCEEECCTTC----------------------CGGGCCHHHHTTCTTCCTHHHHHHHHH
T ss_pred             HCcCEecCCChHHEEEcC--CCCEEEEecCcccccccccccc-------eecccceecCcHHhcCCCCCCcHhHHHhHHH
Confidence            999999999999999985  8899999999998655432211       1234556777777654 55666789999987


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       223 il~~l~  228 (362)
T 3pg1_A          223 VMAEMF  228 (362)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766654

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.48  E-value=8.9e-15  Score=158.22  Aligned_cols=184  Identities=15%  Similarity=0.151  Sum_probs=115.8

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||.|++|+||+|+.  +|+.||||+........                 .                +..      -
T Consensus        14 ~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~-----------------~----------------~~~------~   54 (336)
T 3h4j_B           14 RETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKK-----------------S----------------DMH------M   54 (336)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHH-----------------T----------------TCS------H
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccc-----------------h----------------hHH------H
Confidence            37899999999999998  69999999874311000                 0                000      1


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      .+.+|++.+..+    . +++|.-..-+.+..+..++||||++ +.+.+... ....++...+...+  +-..+..+|..
T Consensus        55 ~~~~E~~~l~~l----~-hpnIv~l~~~~~~~~~~~lv~E~~~-g~l~~~l~-~~~~l~~~~~~~i~~qi~~aL~~LH~~  127 (336)
T 3h4j_B           55 RVEREISYLKLL----R-HPHIIKLYDVITTPTDIVMVIEYAG-GELFDYIV-EKKRMTEDEGRRFFQQIICAIEYCHRH  127 (336)
T ss_dssp             HHHHHHHHHTTC----C-CTTBCCEEEEEECSSEEEEEECCCC-EEHHHHHH-HHCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC----C-CCCCCeEEEEEEeCCEEEEEEECCC-CcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            233444444333    2 3333222222334566799999995 55655432 22334544443333  23347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~-~~~~D~~~l~~~~  532 (765)
                      |++|+|+||+||+++.  ++.++|+|||++....+....       ....+++.++++++..-... .+..|++++...+
T Consensus       128 givH~Dlkp~NIll~~--~~~~kl~DFG~s~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il  198 (336)
T 3h4j_B          128 KIVHRDLKPENLLLDD--NLNVKIADFGLSNIMTDGNFL-------KTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVL  198 (336)
T ss_dssp             TCCCCCCSTTTEEECT--TCCEEECCSSCTBTTTTSBTT-------CCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHH
T ss_pred             CeEecCCchhhEEEcC--CCCEEEEEeccceeccCCccc-------ccccCCcCcCCHHHHcCCCCCCCccchhHHHHHH
Confidence            9999999999999985  889999999999876553211       11235666777776643332 3457888888776


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       199 ~~ll  202 (336)
T 3h4j_B          199 YVML  202 (336)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.48  E-value=7.5e-14  Score=158.35  Aligned_cols=196  Identities=15%  Similarity=0.078  Sum_probs=120.1

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||.|++|.||+|+.  +|+.||||+........-.               ..        +-....++..+      
T Consensus        41 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~---------------~~--------~~~~~~~~~~~------   91 (504)
T 3q5i_A           41 VRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGR---------------YS--------DDNKNIEKFHE------   91 (504)
T ss_dssp             EEEEEC--CEEEEEEEETTTCCEEEEEEEEC---------------------------------------CTHH------
T ss_pred             EeEecccCCeEEEEEEECCCCcEEEEEEEEhhhccccc---------------cc--------ccchhhHHHHH------
Confidence            37899999999999998  5899999998553211100               00        00000011111      


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      .+.+|++.+.++    . +++|.-..-+.+.....+|||||++|++|.+.... ...++...+...+.  -..+..+|..
T Consensus        92 ~~~~E~~~l~~l----~-hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~-~~~~~~~~~~~i~~qi~~~l~~lH~~  165 (504)
T 3q5i_A           92 EIYNEISLLKSL----D-HPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIIN-RHKFDECDAANIMKQILSGICYLHKH  165 (504)
T ss_dssp             HHHHHHHHHHTC----C-CTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC----C-CCCCCeEEEEEEcCCEEEEEEecCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            234444444433    2 34332222222345567999999999999875532 23455554444333  3347889999


Q ss_pred             CccccCCCCCcEEEeecCC-CcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNG-GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~-g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      |++|+|+||.||+++.... ..++|+|||++..++.....       ....+++.++++++.. +..++..|++++...+
T Consensus       166 ~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il  237 (504)
T 3q5i_A          166 NIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKL-------RDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIM  237 (504)
T ss_dssp             TEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTTSCB-------CCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHH
T ss_pred             CeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCCCcc-------ccccCCcCCCCHHHhc-cCCCchHHHHHHHHHH
Confidence            9999999999999985111 26999999999887654211       1123567788888876 4567778999998776


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      ..++
T Consensus       238 ~~ll  241 (504)
T 3q5i_A          238 YILL  241 (504)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.47  E-value=3.7e-14  Score=160.00  Aligned_cols=189  Identities=17%  Similarity=0.163  Sum_probs=122.7

Q ss_pred             cccC-cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          294 ERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       294 ~~fd-~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      +.|. .+.||.|++|.||+|+.  +|+.||||+..+.....                          .+           
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--------------------------~~-----------   64 (486)
T 3mwu_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN--------------------------KD-----------   64 (486)
T ss_dssp             HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBC--------------------------SC-----------
T ss_pred             cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccc--------------------------hH-----------
Confidence            3443 36899999999999998  69999999874311000                          00           


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHH
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLE  448 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~  448 (765)
                         .-.+.+|++.+.++     ++++|.-..-+.+.....++||||++|++|.+.... ...++...+...+..  ..+.
T Consensus        65 ---~~~~~~E~~~l~~l-----~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~-~~~~~~~~~~~i~~qi~~al~  135 (486)
T 3mwu_A           65 ---TSTILREVELLKKL-----DHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIK-RKRFSEHDAARIIKQVFSGIT  135 (486)
T ss_dssp             ---HHHHHHHHHHHHHC-----CCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHhC-----CCCCcCeEEEEEEcCCEEEEEEEcCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHH
Confidence               01234455555544     234332222223345667999999999999875432 234555544443332  3478


Q ss_pred             HHHhCCccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~  527 (765)
                      .+|..|++|+|+||+||+++.. .++.++|+|||++..+......       .-..+++.++++++.. |..++..|+++
T Consensus       136 ~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~-~~~~~~~Diws  207 (486)
T 3mwu_A          136 YMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKM-------KDRIGTAYYIAPEVLR-GTYDEKCDVWS  207 (486)
T ss_dssp             HHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC-----------CCTTGGGGCCGGGGG-SCCCHHHHHHH
T ss_pred             HHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCcc-------CCCcCCCCCCCHHHhC-CCCCchhhHHH
Confidence            8999999999999999999641 2567999999999877654321       1123566777777765 44566779999


Q ss_pred             HHHHHHHHH
Q 004254          528 VRRTAQFFL  536 (765)
Q Consensus       528 l~~~~~~~l  536 (765)
                      +...+..++
T Consensus       208 lG~il~~ll  216 (486)
T 3mwu_A          208 AGVILYILL  216 (486)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887766654

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.47  E-value=3.9e-14  Score=152.53  Aligned_cols=186  Identities=12%  Similarity=0.058  Sum_probs=119.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+.+...                                     ...+.    
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-------------------------------------~~~~~----   63 (373)
T 1q8y_A           25 RKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVY-------------------------------------TEAAE----   63 (373)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSCHHH-------------------------------------HHHHH----
T ss_pred             EeeeecCCeEEEEEEecCCCcEEEEEEecCCccc-------------------------------------hhhhh----
Confidence            6899999999999998  6999999998543110                                     01112    


Q ss_pred             HHHHHHHHHHHHHhc------CCCCc-cccceeeecc---CCCeEEEEeecCCCChhhhhhh-hhcCCCHHHHHHHHH--
Q 004254          377 YTQEAANAELFASNF------KDMDY-VKVPTIFWEY---TTPQILTMEYVPGIKINRIQSL-DELGVDRKRLGRYAV--  443 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f------~~~~~-V~vP~vy~e~---st~~vLVMEyieG~~L~d~~~l-~~~g~d~~~ia~~li--  443 (765)
                        +|.+.+.++.+.-      ..+++ +.+-..+...   ....+++|||+ |++|.++... ...+++...+...+.  
T Consensus        64 --~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi  140 (373)
T 1q8y_A           64 --DEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQL  140 (373)
T ss_dssp             --HHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHH
T ss_pred             --HHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHH
Confidence              2223333332110      00111 1222222111   11569999999 8888876532 223455555444433  


Q ss_pred             HHHHHHHHhC-CccccCCCCCcEEEeec----CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004254          444 ESYLEQILSH-GFFHADPHPGNIAVDDV----NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  518 (765)
Q Consensus       444 ~~~L~qi~~~-GffHaDpHPGNILV~~~----~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~  518 (765)
                      ...+..+|.. |++|+|+||+||+++..    ..+.++|+|||++..++.....         ..++..++++++..-+.
T Consensus       141 ~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~---------~~~t~~y~aPE~~~~~~  211 (373)
T 1q8y_A          141 LLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTN---------SIQTREYRSPEVLLGAP  211 (373)
T ss_dssp             HHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCCS---------CCSCGGGCCHHHHHTCC
T ss_pred             HHHHHHHHhcCCEEecCCChHHeEEeccCCCcCcceEEEcccccccccCCCCCC---------CCCCccccCcHHHhCCC
Confidence            3347889998 99999999999999641    1347999999999877653211         24577788888888777


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 004254          519 LVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       519 ~~~~~D~~~l~~~~~~~l~  537 (765)
                      .++..|++++...+.+++.
T Consensus       212 ~~~~~Di~slG~il~el~~  230 (373)
T 1q8y_A          212 WGCGADIWSTACLIFELIT  230 (373)
T ss_dssp             CCTHHHHHHHHHHHHHHHH
T ss_pred             CCchHhHHHHHHHHHHHHh
Confidence            7788899999887766653

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.47  E-value=8e-15  Score=156.17  Aligned_cols=183  Identities=15%  Similarity=0.027  Sum_probs=114.5

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +.||.|++|.||+|+..|+.||||+.+..-...                                           ..+.
T Consensus        30 ~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~-------------------------------------------~~~~   66 (322)
T 3soc_A           30 EVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQS-------------------------------------------WQNE   66 (322)
T ss_dssp             EEEECSTTCEEEEEEETTEEEEEEEECGGGHHH-------------------------------------------HHHH
T ss_pred             heecccCceEEEEEEECCCEEEEEEeecCchHH-------------------------------------------HHHH
Confidence            689999999999999999999999984321110                                           0111


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccC---CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s---t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      .|+..+.+    +.+..-+.+-.++.+-.   ...++||||++|++|.++...  ..++...+...+.  ...+..+|..
T Consensus        67 ~E~~~l~~----l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~i~~qi~~al~~LH~~  140 (322)
T 3soc_A           67 YEVYSLPG----MKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKA--NVVSWNELCHIAETMARGLAYLHED  140 (322)
T ss_dssp             HHHHTSTT----CCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhc----CCCCCchhhcceeccCCCCCceEEEEEecCCCCCHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            23332222    22222222222222211   125999999999999997543  3345444443332  3347788888


Q ss_pred             ----------CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-----
Q 004254          454 ----------GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-----  518 (765)
Q Consensus       454 ----------GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~-----  518 (765)
                                |++|+|+||.||+++.  ++.++|+|||++..+........    .....+++.++++++..-+.     
T Consensus       141 ~~~l~~~~~~~ivH~Dlkp~Nill~~--~~~~kL~DFg~a~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~  214 (322)
T 3soc_A          141 IPGLKDGHKPAISHRDIKSKNVLLKN--NLTACIADFGLALKFEAGKSAGD----THGQVGTRRYMAPEVLEGAINFQRD  214 (322)
T ss_dssp             EEEETTEEECEEECSCCSGGGEEECT--TCCEEECCCTTCEEECTTSCCCC----CTTCCCCGGGCCHHHHTTCCCCCHH
T ss_pred             ccccccccCCCEEeCCCChHhEEECC--CCeEEEccCCcccccccccCccc----cccCccCccccCHhhcccccccCcC
Confidence                      9999999999999985  88999999999987654321100    00123567778888775422     


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 004254          519 LVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       519 ~~~~~D~~~l~~~~~~~l  536 (765)
                      .++..|++++...+.+++
T Consensus       215 ~~~~~DiwslG~il~el~  232 (322)
T 3soc_A          215 AFLRIDMYAMGLVLWELA  232 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             CCccchhHHHHHHHHHHH
Confidence            122347888877665554

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.47  E-value=6e-14  Score=146.51  Aligned_cols=185  Identities=12%  Similarity=0.070  Sum_probs=117.5

Q ss_pred             ccccccceeEEEEEEe----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      +.||+|++|.||+|.+    .|+.||||+.++.....                                  ...+     
T Consensus        23 ~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------~~~~-----   63 (291)
T 1xbb_A           23 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDP----------------------------------ALKD-----   63 (291)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----C----------------------------------HHHH-----
T ss_pred             CccccccCeeeEeeeecCCCceeeEEEEeecccccCH----------------------------------HHHH-----
Confidence            4899999999999965    37899999985432110                                  0011     


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeec-cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQIL  451 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e-~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~  451 (765)
                       .+.+|++.+..+    . +++  +++++.- .....++||||++|++|.++... ...++...+...+.  ...+..+|
T Consensus        64 -~~~~e~~~l~~l----~-h~~--i~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~~l~~LH  134 (291)
T 1xbb_A           64 -ELLAEANVMQQL----D-NPY--IVRMIGICEAESWMLVMEMAELGPLNKYLQQ-NRHVKDKNIIELVHQVSMGMKYLE  134 (291)
T ss_dssp             -HHHHHHHHHHTC----C-CTT--BCCEEEEEESSSEEEEEECCTTEEHHHHHHH-CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhC----C-CCC--EEEEEEEECCCCcEEEEEeCCCCCHHHHHHh-CcCCCHHHHHHHHHHHHHHHHHHH
Confidence             234455444433    2 232  2223221 24567999999999999987542 22355554444333  33478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..|++|+|+||.||+++.  ++.++|+|||++..+.........   .........+++++....+..++..|++++...
T Consensus       135 ~~~i~H~dikp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  209 (291)
T 1xbb_A          135 ESNFVHRDLAARNVLLVT--QHYAKISDFGLSKALRADENYYKA---QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVL  209 (291)
T ss_dssp             HTTEECSCCSGGGEEEEE--TTEEEECCCTTCEECCTTCSEEEC-------CCCGGGCCHHHHHHCEEEHHHHHHHHHHH
T ss_pred             hCCeEcCCCCcceEEEeC--CCcEEEccCCcceeeccCCCcccc---cccCCCCceeeChHHhccCCCChhhhHHHHHHH
Confidence            999999999999999987  889999999999877543210000   000122355667777766556667788888876


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       210 l~~l~  214 (291)
T 1xbb_A          210 MWEAF  214 (291)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65554

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.47  E-value=2.2e-13  Score=143.70  Aligned_cols=186  Identities=16%  Similarity=0.173  Sum_probs=115.7

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|++|.||+|+. +|+.||||+.+......                                  +.      .-.+
T Consensus        34 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~----------------------------------~~------~~~~   73 (313)
T 3cek_A           34 KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADN----------------------------------QT------LDSY   73 (313)
T ss_dssp             EEEECCSSEEEEEEECTTCCEEEEEEEECSSCCH----------------------------------HH------HHHH
T ss_pred             EEecCCCCEEEEEEEcCCCcEEEEEEeccccccc----------------------------------cc------hHHH
Confidence            6899999999999999 79999999885432111                                  00      1134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~Gf  455 (765)
                      .+|++.+.++.+.   .+++.-..-+.......+++|| +.|++|.++... ...++...+...+  +-..+..+|..|+
T Consensus        74 ~~E~~~l~~l~~~---~~~iv~~~~~~~~~~~~~lv~e-~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~i  148 (313)
T 3cek_A           74 RNEIAYLNKLQQH---SDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGI  148 (313)
T ss_dssp             HHHHHHHHHHGGG---CTTBCCEEEEEECSSEEEEEEC-CCSEEHHHHHHH-CSSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcccc---CCceEEEEEEeecCCEEEEEEe-cCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            5566666666531   2222222222233456799999 567788876542 2234544443332  2334788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-----------CCCCCCCC
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-----------GVLVPTGD  524 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-----------G~~~~~~D  524 (765)
                      +|+|+||+||+++   ++.++|+|||++..+.........    ....+++.++++++...           +..++..|
T Consensus       149 vH~dlkp~NIl~~---~~~~kL~Dfg~~~~~~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~D  221 (313)
T 3cek_A          149 VHSDLKPANFLIV---DGMLKLIDFGIANQMQPDTTSVVK----DSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSD  221 (313)
T ss_dssp             CCCCCCGGGEEEE---TTEEEECCCSSSCC------------------CCGGGCCHHHHTTCC----------CCCHHHH
T ss_pred             eecCCCcccEEEE---CCeEEEeeccccccccCccccccc----cCCCCCCCcCCHHHHhhcccccccccccccCCchHH
Confidence            9999999999996   689999999999887654332111    12235777888888754           24455678


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++...+.+++
T Consensus       222 i~slG~il~el~  233 (313)
T 3cek_A          222 VWSLGCILYYMT  233 (313)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888887665544

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.47  E-value=2e-13  Score=160.52  Aligned_cols=183  Identities=16%  Similarity=0.158  Sum_probs=123.2

Q ss_pred             ccccccceeEEEEEEe--C---CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--K---GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~---G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||.|++|.||+|++  +   +..||||+.+....+.                                   ..     
T Consensus       396 ~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~-----  435 (656)
T 2j0j_A          396 RCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDS-----------------------------------VR-----  435 (656)
T ss_dssp             EEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHH-----------------------------------HH-----
T ss_pred             eEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHH-----------------------------------HH-----
Confidence            6799999999999998  2   4679999875432111                                   11     


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeec-cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  450 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e-~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi  450 (765)
                       -.|.+|+..+.++.     +++|  ++++.- ..+..++||||++|++|.++.......++...+...+  +...+..+
T Consensus       436 -~~~~~E~~~l~~l~-----HpnI--v~l~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~L  507 (656)
T 2j0j_A          436 -EKFLQEALTMRQFD-----HPHI--VKLIGVITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYL  507 (656)
T ss_dssp             -HHHHHHHHHHHHCC-----CTTB--CCEEEEECSSSCEEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhCC-----CCCC--CeEEEEEecCceEEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence             13455665555542     2332  222221 2345799999999999999765444445655544433  33458889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      |..|++|+|+||.||+++.  ++.++|+|||++..+........     ......+.+++++....+..++..|++++..
T Consensus       508 H~~givHrDikp~NILl~~--~~~vkL~DFG~a~~~~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~  580 (656)
T 2j0j_A          508 ESKRFVHRDIAARNVLVSS--NDCVKLGDFGLSRYMEDSTYYKA-----SKGKLPIKWMAPESINFRRFTSASDVWMFGV  580 (656)
T ss_dssp             HHTTCCCSCCSGGGEEEEE--TTEEEECCCCCCCSCCC---------------CCGGGCCHHHHHHCCCCHHHHHHHHHH
T ss_pred             HhCCccccccchHhEEEeC--CCCEEEEecCCCeecCCCcceec-----cCCCCCcceeCHHHhcCCCCCchhhHHHHHH
Confidence            9999999999999999997  89999999999998765432111     1123456788888888777777789999887


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       581 il~ell  586 (656)
T 2j0j_A          581 CMWEIL  586 (656)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.47  E-value=3.2e-14  Score=167.49  Aligned_cols=173  Identities=23%  Similarity=0.206  Sum_probs=111.4

Q ss_pred             ccccccceeEEEEEEe---CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL---KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l---~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      ..||.|++|.||+|++   +|+.||||+..+.....                                   ...      
T Consensus        86 ~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~~------  124 (681)
T 2pzi_A           86 GCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAE-----------------------------------AQA------  124 (681)
T ss_dssp             EEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHH-----------------------------------HHH------
T ss_pred             EEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHH-----------------------------------HHH------
Confidence            6899999999999998   48999999875432110                                   011      


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeee--ccCCC-----eEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTP-----QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SY  446 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~-----~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~  446 (765)
                      .+.+|++.+.++    . +++  |++++.  .....     .+|||||++|++|.+....   .++...+...+.+  ..
T Consensus       125 ~~~~E~~~l~~l----~-hp~--iv~~~~~~~~~~~~~~~~~~lv~E~~~g~~L~~~~~~---~l~~~~~~~~~~qi~~a  194 (681)
T 2pzi_A          125 MAMAERQFLAEV----V-HPS--IVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLEILPA  194 (681)
T ss_dssp             HHHHHHGGGGGC----C-CTT--BCCEEEEEEEECTTSCEEEEEEEECCCCEECC----C---CCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc----C-CCC--cCeEeeeEeecCCCCCceeEEEEEeCCCCcHHHHHhC---CCCHHHHHHHHHHHHHH
Confidence            233344333322    2 233  333332  11222     5999999999999876422   4555555444333  34


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHH
Q 004254          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTT  526 (765)
Q Consensus       447 L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~  526 (765)
                      +..+|..|++|+|+||+||+++.   +.++|+|||++..++..          ....+++.+++++....+. +...|++
T Consensus       195 L~~lH~~giiHrDlkp~NIll~~---~~~kl~DFG~a~~~~~~----------~~~~gt~~y~aPE~~~~~~-~~~sDi~  260 (681)
T 2pzi_A          195 LSYLHSIGLVYNDLKPENIMLTE---EQLKLIDLGAVSRINSF----------GYLYGTPGFQAPEIVRTGP-TVATDIY  260 (681)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECS---SCEEECCCTTCEETTCC----------SCCCCCTTTSCTTHHHHCS-CHHHHHH
T ss_pred             HHHHHHCCCeecccChHHeEEeC---CcEEEEecccchhcccC----------CccCCCccccCHHHHcCCC-CCceehh
Confidence            88899999999999999999974   58999999999887653          1123556666676665543 4556777


Q ss_pred             HHHHHHHHHH
Q 004254          527 AVRRTAQFFL  536 (765)
Q Consensus       527 ~l~~~~~~~l  536 (765)
                      ++...+.+++
T Consensus       261 slG~~l~~l~  270 (681)
T 2pzi_A          261 TVGRTLAALT  270 (681)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhHHHHHHHH
Confidence            7776665544

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.47  E-value=2.9e-13  Score=145.55  Aligned_cols=180  Identities=19%  Similarity=0.204  Sum_probs=114.7

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||+|++|.||+|+.  +|+.||||+.+......                                  ....      
T Consensus        29 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~------   68 (353)
T 3coi_A           29 PTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSE----------------------------------IFAK------   68 (353)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSH----------------------------------HHHH------
T ss_pred             eeeEecCCCeEEEEEEECCCCCEEEEEEecccccch----------------------------------HHHH------
Confidence            37899999999999998  69999999885432111                                  0111      


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccC-----CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYT-----TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLE  448 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s-----t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~  448 (765)
                      .+.+|+..+..+    .+..-+.+-.++....     ...++||||++| .|.+...   ..++...+...+.+  ..+.
T Consensus        69 ~~~~E~~~l~~l----~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~---~~~~~~~~~~i~~qi~~al~  140 (353)
T 3coi_A           69 RAYRELLLLKHM----QHENVIGLLDVFTPASSLRNFYDFYLVMPFMQT-DLQKIMG---LKFSEEKIQYLVYQMLKGLK  140 (353)
T ss_dssp             HHHHHHHHHHHC----CCTTBCCCSEEECSCSSGGGCCCCEEEEECCSE-EGGGTTT---SCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc----CCCCcccHhheEecccccccceeEEEEeccccC-CHHHHhc---CCCCHHHHHHHHHHHHHHHH
Confidence            233444444443    2222223333332211     134999999996 5655432   23555554444333  3478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTA  527 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~  527 (765)
                      .+|..|++|+|+||+||+++.  ++.++|+|||++...+....         ...++..++++++... +..++..|+++
T Consensus       141 ~LH~~~ivH~dlkp~NIl~~~--~~~~kl~Dfg~~~~~~~~~~---------~~~~t~~y~aPE~~~~~~~~~~~~Di~s  209 (353)
T 3coi_A          141 YIHSAGVVHRDLKPGNLAVNE--DCELKILDFGLARHADAEMT---------GYVVTRWYRAPEVILSWMHYNQTVDIWS  209 (353)
T ss_dssp             HHHHTTCCCSSCCGGGEEECT--TCCEEECSTTCTTC-----------------CCSBCCSCHHHHSCCSCCCTTHHHHH
T ss_pred             HHHHCCcccCCCCHHHEeECC--CCcEEEeecccccCCCCCcc---------ccccCcCcCCHHHHhCcCCCCchhhHHH
Confidence            899999999999999999985  88999999999987654321         1234566777777654 45567789999


Q ss_pred             HHHHHHHHH
Q 004254          528 VRRTAQFFL  536 (765)
Q Consensus       528 l~~~~~~~l  536 (765)
                      +...+.+++
T Consensus       210 lG~il~el~  218 (353)
T 3coi_A          210 VGCIMAEML  218 (353)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            987766654

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.47  E-value=8.4e-14  Score=150.78  Aligned_cols=185  Identities=15%  Similarity=0.113  Sum_probs=120.4

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.++.....                                   ..      -.
T Consensus        33 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------~~------~~   71 (364)
T 3qyz_A           33 SYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQT-----------------------------------YC------QR   71 (364)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHH-----------------------------------HH------HH
T ss_pred             EEeecCCCeEEEEEEECCCCeEEEEEEeccccCcH-----------------------------------HH------HH
Confidence            7899999999999998  69999999986532111                                   00      12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc----CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQI  450 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~----st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi  450 (765)
                      +.+|++.+.++.    +..-+.+-.++...    ....++||||++| .|.++..  ...++...+...+.  -..+..+
T Consensus        72 ~~~E~~~l~~l~----h~niv~~~~~~~~~~~~~~~~~~iv~e~~~~-~L~~~l~--~~~~~~~~~~~i~~qi~~aL~~L  144 (364)
T 3qyz_A           72 TLREIKILLRFR----HENIIGINDIIRAPTIEQMKDVYIVQDLMET-DLYKLLK--TQHLSNDHICYFLYQILRGLKYI  144 (364)
T ss_dssp             HHHHHHHHHHCC----CTTBCCCCEEECCSSTTTCCCEEEEEECCSE-EHHHHHH--HCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC----CCCCccceeEEecCCccccceEEEEEcccCc-CHHHHHH--hCCCCHHHHHHHHHHHHHHHHHH
Confidence            345555555442    22222333333211    1356999999997 6666542  33455555444333  3447889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVR  529 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~  529 (765)
                      |..|++|+|+||+||+++.  ++.++|+|||++...+......-   ...-..+++.++++++...+ ..++..|++++.
T Consensus       145 H~~~ivH~Dikp~NIl~~~--~~~~kl~Dfg~a~~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG  219 (364)
T 3qyz_A          145 HSANVLHRDLKPSNLLLNT--TCDLKICDFGLARVADPDHDHTG---FLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVG  219 (364)
T ss_dssp             HHTTEECCCCCGGGEEECT--TCCEEECCCTTCEECCGGGCBCC---TTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHH
T ss_pred             HHCCeecCCCChHhEEECC--CCCEEEEeCcceEecCCCCCccc---cccccccccCCCCCHHhcCCCCCCcchhHHHHH
Confidence            9999999999999999985  88999999999988765421100   00112356677788865543 356677999998


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       220 ~il~ell  226 (364)
T 3qyz_A          220 CILAEML  226 (364)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776655

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.47  E-value=4.5e-14  Score=151.88  Aligned_cols=189  Identities=15%  Similarity=0.021  Sum_probs=120.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.++.....-                    ........              -.
T Consensus        30 ~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~--------------------~~~~~~~~--------------~~   75 (335)
T 3dls_A           30 SPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLED--------------------CWIEDPKL--------------GK   75 (335)
T ss_dssp             EECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTT--------------------SEEEETTT--------------EE
T ss_pred             eEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccc--------------------cccchHHH--------------HH
Confidence            7899999999999997  699999999865421100                    00000000              01


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCC-ChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGI-KINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~-~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      +.+|+..+.++    . +++|.-..-+.+.....++||||+.++ +|.++... ...++...+...+  +...+..+|..
T Consensus        76 ~~~E~~~l~~l----~-h~~Iv~~~~~~~~~~~~~lv~e~~~~g~~l~~~~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~  149 (335)
T 3dls_A           76 VTLEIAILSRV----E-HANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDR-HPRLDEPLASYIFRQLVSAVGYLRLK  149 (335)
T ss_dssp             EEHHHHHHTTC----C-CTTBCCEEEEEECSSEEEEEEECCTTSCBHHHHHHT-CCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhC----C-CCCEeeEEEEEeeCCEEEEEEEeCCCCccHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            23344434333    2 233322222234455678999998655 88776532 2234544444333  23347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~-~~~~D~~~l~~~~  532 (765)
                      |++|+|+||.||+++.  ++.++|+|||++..+......       ....+++.+++++...-... .+..|++++...+
T Consensus       150 ~ivH~Dlkp~NIll~~--~~~~kL~Dfg~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il  220 (335)
T 3dls_A          150 DIIHRDIKDENIVIAE--DFTIKLIDFGSAAYLERGKLF-------YTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTL  220 (335)
T ss_dssp             TEECSCCSGGGEEECT--TSCEEECCCTTCEECCTTCCB-------CEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHH
T ss_pred             CeEEeccCHHHEEEcC--CCcEEEeecccceECCCCCce-------eccCCCccccChhhhcCCCCCCCcccchhHHHHH
Confidence            9999999999999986  889999999999887653210       01235778888888765443 4566999988776


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       221 ~el~  224 (335)
T 3dls_A          221 YTLV  224 (335)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.47  E-value=5.5e-14  Score=159.01  Aligned_cols=184  Identities=15%  Similarity=0.125  Sum_probs=116.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+......                          ...              -.
T Consensus        43 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--------------------------~~~--------------~~   82 (494)
T 3lij_A           43 KKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVST--------------------------SSN--------------SK   82 (494)
T ss_dssp             EEEECC---EEEEEEETTTCCEEEEEEEEC-------------------------------CTT--------------HH
T ss_pred             eEEecCCCEEEEEEEECCCCcEEEEEEEeccccCc--------------------------hHH--------------HH
Confidence            6899999999999999  68999999985432110                          000              12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +.+|++.+..+     ++++|.-..-+.+.....++||||++|++|.+... ....++...+...+.  -..+..+|..|
T Consensus        83 ~~~E~~~l~~l-----~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~  156 (494)
T 3lij_A           83 LLEEVAVLKLL-----DHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEII-HRMKFNEVDAAVIIKQVLSGVTYLHKHN  156 (494)
T ss_dssp             HHHHHHHHTTC-----CCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC-----CCCCCCeEEEEEEeCCEEEEEEecCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33444444333     23333222222234556799999999999987543 223445444443332  33478899999


Q ss_pred             ccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|+||.||+++.. .++.++|+|||++..+......       ....+++.++++++.. +..++..|++++...+.
T Consensus       157 ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~~-------~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~  228 (494)
T 3lij_A          157 IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKM-------KERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILF  228 (494)
T ss_dssp             EECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBCB-------CCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHH
T ss_pred             ceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCccc-------cccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHH
Confidence            9999999999999751 2356999999999877543210       1123567788888775 45677789999987766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      .++
T Consensus       229 ~ll  231 (494)
T 3lij_A          229 ILL  231 (494)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.46  E-value=3.5e-13  Score=146.63  Aligned_cols=180  Identities=18%  Similarity=0.199  Sum_probs=114.0

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||+|++|.||+|+.  +|+.||||+.+......                                  ....      
T Consensus        47 ~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~~~------   86 (371)
T 4exu_A           47 PTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSE----------------------------------IFAK------   86 (371)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSH----------------------------------HHHH------
T ss_pred             EeEEecCCCeEEEEEEECCCCCEEEEEEecccccch----------------------------------hHHH------
Confidence            36899999999999998  69999999885432211                                  0111      


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCC-----CeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTT-----PQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLE  448 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st-----~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~  448 (765)
                      .+.+|+..+..+    .+..-+.+-.++.....     ..++||||++| .|.+..   ...++...+...+.  -..+.
T Consensus        87 ~~~~E~~~l~~l----~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~---~~~~~~~~~~~i~~qi~~aL~  158 (371)
T 4exu_A           87 RAYRELLLLKHM----QHENVIGLLDVFTPASSLRNFYDFYLVMPFMQT-DLQKIM---GMEFSEEKIQYLVYQMLKGLK  158 (371)
T ss_dssp             HHHHHHHHHHHC----CCTTBCCCSEEECSCSSSTTCCCCEEEEECCCE-EHHHHT---TSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc----CCCCchhhhhheeccCCcccceeEEEEEccccc-cHHHHh---hcCCCHHHHHHHHHHHHHHHH
Confidence            233444444443    22222333333322111     12999999996 454432   22355555444333  34478


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTA  527 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~  527 (765)
                      .+|..|++|+|+||+||+++.  ++.++|+|||++...+....         -..++..++++++..- ...++..|+++
T Consensus       159 ~LH~~~ivH~Dikp~NIll~~--~~~~kL~Dfg~a~~~~~~~~---------~~~~t~~y~aPE~~~~~~~~~~~~Diws  227 (371)
T 4exu_A          159 YIHSAGVVHRDLKPGNLAVNE--DCELKILDFGLARHADAEMT---------GYVVTRWYRAPEVILSWMHYNQTVDIWS  227 (371)
T ss_dssp             HHHHTTCCCSCCCGGGEEECT--TCCEEECSTTCC-----------------CTTCCCTTSCHHHHSCCSCCCTTHHHHH
T ss_pred             HHHHCCCcCCCcCHHHeEECC--CCCEEEEecCcccccccCcC---------CcccCccccCHHHhcCCCCCCcHHhHHH
Confidence            899999999999999999986  88999999999987654321         1234667788887754 45677789999


Q ss_pred             HHHHHHHHH
Q 004254          528 VRRTAQFFL  536 (765)
Q Consensus       528 l~~~~~~~l  536 (765)
                      +...+.+++
T Consensus       228 lG~il~el~  236 (371)
T 4exu_A          228 VGCIMAEML  236 (371)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988776654

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.46  E-value=1.5e-13  Score=140.64  Aligned_cols=183  Identities=11%  Similarity=0.101  Sum_probs=118.8

Q ss_pred             cccC-cccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          294 ERFD-VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       294 ~~fd-~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      ..|. .+.||+|++|.||+|+.+|+.||||+.+......                                  +..+   
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~avK~~~~~~~~~----------------------------------~~~~---   52 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWST----------------------------------RKSR---   52 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEETTEEEEEEEECCTTCCH----------------------------------HHHH---
T ss_pred             HHhHHHHHhcCCCcceEEEEEECCeeEEEEEecccccCH----------------------------------HHHH---
Confidence            3443 3789999999999999999999999985532111                                  0001   


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeee--ccC--CCeEEEEeecCCCChhhhhhhhhc-CCCHHHHHHHHHH--H
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYT--TPQILTMEYVPGIKINRIQSLDEL-GVDRKRLGRYAVE--S  445 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~s--t~~vLVMEyieG~~L~d~~~l~~~-g~d~~~ia~~li~--~  445 (765)
                         .|.+|++.+.++    . +++|  .+++.  ...  ...+++|||++|++|.++...... .++...+...+.+  .
T Consensus        53 ---~~~~E~~~l~~l----~-h~~i--v~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~  122 (271)
T 3kmu_A           53 ---DFNEECPRLRIF----S-HPNV--LPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMAR  122 (271)
T ss_dssp             ---HHHHHGGGGCCC----S-CTTE--ECEEEEECTTTSSSCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhc----C-CCch--hheEEEEccCCCCCeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHH
Confidence               233444333222    2 2332  23332  222  456999999999999997643222 2455555444433  3


Q ss_pred             HHHHHHhCC--ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCC--
Q 004254          446 YLEQILSHG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVP--  521 (765)
Q Consensus       446 ~L~qi~~~G--ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~--  521 (765)
                      .+..+|..|  ++|+|+||.||+++.  ++.+++.|||+........           ..+++.+++++.........  
T Consensus       123 ~l~~lH~~~~~i~H~dikp~Nil~~~--~~~~~l~~~~~~~~~~~~~-----------~~~t~~y~aPE~~~~~~~~~~~  189 (271)
T 3kmu_A          123 GMAFLHTLEPLIPRHALNSRSVMIDE--DMTARISMADVKFSFQSPG-----------RMYAPAWVAPEALQKKPEDTNR  189 (271)
T ss_dssp             HHHHHTTSSSCCTTCCCSGGGEEECT--TSCEEEEGGGSCCTTSCTT-----------CBSCGGGSCHHHHHSCGGGSCH
T ss_pred             HHHHHhcCCCceecCCCccceEEEcC--CcceeEEeccceeeecccC-----------ccCCccccChhhhccCCCCCCC
Confidence            478899999  999999999999985  7888888888765543322           13466778888877543333  


Q ss_pred             -CCCHHHHHHHHHHHH
Q 004254          522 -TGDTTAVRRTAQFFL  536 (765)
Q Consensus       522 -~~D~~~l~~~~~~~l  536 (765)
                       ..|++++...+.+++
T Consensus       190 ~~~Di~slG~il~el~  205 (271)
T 3kmu_A          190 RSADMWSFAVLLWELV  205 (271)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHH
Confidence             478888887766554

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.46  E-value=2e-13  Score=143.46  Aligned_cols=183  Identities=18%  Similarity=0.224  Sum_probs=101.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.++.....-                                         +..
T Consensus        31 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~-----------------------------------------~~~   69 (318)
T 2dyl_A           31 GEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEE-----------------------------------------NKR   69 (318)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEEEETTSCHHH-----------------------------------------HHH
T ss_pred             ceeeecCCeeEEEEEEecCCeEEEEEEecccccchH-----------------------------------------HHH
Confidence            6899999999999999  599999999865422110                                         001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh-C
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS-H  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~-~  453 (765)
                      +..|..   .+.... ++++|.-..-+.......++||||+ |..+..+.......++...+...+.  ...+..+|. +
T Consensus        70 ~~~~~~---~~~~~~-~h~~i~~~~~~~~~~~~~~lv~e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~  144 (318)
T 2dyl_A           70 ILMDLD---VVLKSH-DCPYIVQCFGTFITNTDVFIAMELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKH  144 (318)
T ss_dssp             HHHHHH---HHHHTT-TCTTBCCEEEEEECSSEEEEEECCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH---HHHHhc-CCCceeeEEEEEecCCcEEEEEecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence            111111   111122 2333322222233455679999999 5555554432233455554443333  234778888 4


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-----cCCCCCCCCHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-----MGVLVPTGDTTAV  528 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~-----lG~~~~~~D~~~l  528 (765)
                      |++|+|+||.||+++.  ++.++|+|||++..+.......       ...++..++++++..     .+..++..|++++
T Consensus       145 ~i~H~dlkp~Nil~~~--~~~~kl~dfg~~~~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~sl  215 (318)
T 2dyl_A          145 GVIHRDVKPSNILLDE--RGQIKLCDFGISGRLVDDKAKD-------RSAGCAAYMAPERIDPPDPTKPDYDIRADVWSL  215 (318)
T ss_dssp             CCCCCCCCGGGEEECT--TSCEEECCCTTC---------------------CCTTCCHHHHC--------CCTHHHHHHH
T ss_pred             CEEeCCCCHHHEEECC--CCCEEEEECCCchhccCCcccc-------ccCCCccccChhhcccccccccCCccccchhhH
Confidence            9999999999999985  8899999999998775532211       123455667777763     3345566789988


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      ...+.+++
T Consensus       216 G~il~~l~  223 (318)
T 2dyl_A          216 GISLVELA  223 (318)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87766554

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.46  E-value=2.1e-14  Score=153.38  Aligned_cols=198  Identities=14%  Similarity=0.093  Sum_probs=120.4

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +.||+|++|.||+|+.+|+.||||+.++.......              ... .............          -.+.
T Consensus        37 ~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~----------~~~~   91 (348)
T 2pml_X           37 RTLNQGKFNKIILCEKDNKFYALKKYEKSLLEKKR--------------DFT-KSNNDKISIKSKY----------DDFK   91 (348)
T ss_dssp             EEEECCSSCCEEEEEETTEEEEEEEEEHHHHSSCE--------------EEC-CCSSSSCCEEEHH----------HHHH
T ss_pred             EEEcCCCCeEEEEEEcCCceEEEEEeecccccchh--------------hhc-cccchhhhHHhHH----------HHHH
Confidence            68999999999999999999999988543211000              000 0000000000000          1344


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhh------hhhh-hcCCCHHHHHHHH--HHHHHHH
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRI------QSLD-ELGVDRKRLGRYA--VESYLEQ  449 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~------~~l~-~~g~d~~~ia~~l--i~~~L~q  449 (765)
                      +|+..+.++    . ++++.-..-+.......++||||++|++|.++      .... ...++...+...+  +-..+..
T Consensus        92 ~E~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~  166 (348)
T 2pml_X           92 NELQIITDI----K-NEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSY  166 (348)
T ss_dssp             HHHHHHTTC----C-CTTBCCCSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC----C-CCCcceEEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHH
Confidence            555554444    2 33332222223345677999999999999886      3211 2334444443333  2334788


Q ss_pred             HHh-CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCC-CCCHH
Q 004254          450 ILS-HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVP-TGDTT  526 (765)
Q Consensus       450 i~~-~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~-~~D~~  526 (765)
                      +|. .|++|+|+||+||+++.  ++.++|+|||++..+.....        ....++..+++++....+ ...+ ..|++
T Consensus       167 lH~~~~i~H~dl~p~Nil~~~--~~~~kl~dfg~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~~~Di~  236 (348)
T 2pml_X          167 IHNEKNICHRDVKPSNILMDK--NGRVKLSDFGESEYMVDKKI--------KGSRGTYEFMPPEFFSNESSYNGAKVDIW  236 (348)
T ss_dssp             HHHTSCEECCCCCGGGEEECT--TSCEEECCCTTCEECBTTEE--------CSSCSCGGGCCGGGGSSCCCEEHHHHHHH
T ss_pred             HhccCCEeecCCChHhEEEcC--CCcEEEeccccccccccccc--------cCCCCCcCccCchhhcCCCCCCcchhhHH
Confidence            998 99999999999999985  88999999999987654311        112355666777766544 2223 56888


Q ss_pred             HHHHHHHHHH
Q 004254          527 AVRRTAQFFL  536 (765)
Q Consensus       527 ~l~~~~~~~l  536 (765)
                      ++...+.+++
T Consensus       237 slG~il~~l~  246 (348)
T 2pml_X          237 SLGICLYVMF  246 (348)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8877665554

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.46  E-value=4.2e-13  Score=142.40  Aligned_cols=183  Identities=15%  Similarity=0.153  Sum_probs=102.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.++......                                         +.+
T Consensus        28 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~-----------------------------------------~~~   66 (327)
T 3aln_A           28 GEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKE-----------------------------------------QKQ   66 (327)
T ss_dssp             CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHH-----------------------------------------HHH
T ss_pred             heeccCCCEEEEEEEEcCCCCEEEEEEeecccCchH-----------------------------------------HHH
Confidence            6799999999999999  599999999865432110                                         001


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhh----hhcCCCHHHHHHHHH--HHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSL----DELGVDRKRLGRYAV--ESYLEQI  450 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l----~~~g~d~~~ia~~li--~~~L~qi  450 (765)
                      +..|...   +.... ++++|.-..-+.......++||||++| .+.++...    ....++...+...+.  ...+..+
T Consensus        67 ~~~e~~~---~~~~~-~h~niv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~l  141 (327)
T 3aln_A           67 LLMDLDV---VMRSS-DCPYIVQFYGALFREGDCWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHL  141 (327)
T ss_dssp             HHHHHHH---HHSSC-CCTTBCCEEEEEECSSEEEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH---HHHcC-CCCcEeeeeeEEEeCCceEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHH
Confidence            1112211   11222 223332222222334567999999998 55554321    122344444433332  2347788


Q ss_pred             HhC-CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH----cCCCCCCCCH
Q 004254          451 LSH-GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ----MGVLVPTGDT  525 (765)
Q Consensus       451 ~~~-GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~----lG~~~~~~D~  525 (765)
                      |.. |++|+|+||.||+++.  ++.++|+|||++..+.......       ...++..++++++..    .+..++..|+
T Consensus       142 H~~~~ivH~dlkp~NIll~~--~~~~kl~Dfg~~~~~~~~~~~~-------~~~gt~~y~aPE~~~~~~~~~~~~~~~Di  212 (327)
T 3aln_A          142 KENLKIIHRDIKPSNILLDR--SGNIKLCDFGISGQLVDSIAKT-------RDAGCRPYMAPERIDPSASRQGYDVRSDV  212 (327)
T ss_dssp             HHHHSCCCSCCCGGGEEEET--TTEEEECCCSSSCC-------------------------------------CCSHHHH
T ss_pred             hccCCEeECCCCHHHEEEcC--CCCEEEccCCCceecccccccc-------cCCCCccccCceeeccccCcCCCCchhhH
Confidence            888 9999999999999985  8999999999998876543211       113566788888873    3345667799


Q ss_pred             HHHHHHHHHHH
Q 004254          526 TAVRRTAQFFL  536 (765)
Q Consensus       526 ~~l~~~~~~~l  536 (765)
                      +++...+.+++
T Consensus       213 ~slG~il~~l~  223 (327)
T 3aln_A          213 WSLGITLYELA  223 (327)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99887766654

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.45  E-value=5.4e-14  Score=156.07  Aligned_cols=190  Identities=12%  Similarity=0.095  Sum_probs=113.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+..+.....                    ..              ...-.....
T Consensus       141 ~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~--------------------~~--------------~~~~~~~~~  186 (419)
T 3i6u_A          141 KTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAI--------------------GS--------------AREADPALN  186 (419)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTT--------------------C----------------------CC
T ss_pred             eEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcc--------------------cc--------------cccchhHHH
Confidence            6899999999999998  58999999985432110                    00              000001123


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|++.+.++.    +..-+.+-.++  .....++||||++|++|.+.... ...++...+...+  +...+..+|..|
T Consensus       187 ~~~E~~~l~~l~----hpniv~l~~~~--~~~~~~lv~e~~~~g~L~~~l~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~  259 (419)
T 3i6u_A          187 VETEIEILKKLN----HPCIIKIKNFF--DAEDYYIVLELMEGGELFDKVVG-NKRLKEATCKLYFYQMLLAVQYLHENG  259 (419)
T ss_dssp             HHHHHHHHHHCC----CTTBCCCCEEE--ESSEEEEEEECCTTCBGGGGTSS-SCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC----CCCEeeEEEEE--ecCceEEEEEcCCCCcHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            556666565542    22222333332  23456999999999999876432 2234444433332  234578899999


Q ss_pred             ccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCCCCCCCHHHHHH
Q 004254          455 FFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVLVPTGDTTAVRR  530 (765)
Q Consensus       455 ffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~---lG~~~~~~D~~~l~~  530 (765)
                      ++|+|+||.||+++.. .+..++|+|||++..++.....   .    ...+++.++++++..   .+..++..|++++..
T Consensus       260 ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~~~~---~----~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~  332 (419)
T 3i6u_A          260 IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLM---R----TLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGV  332 (419)
T ss_dssp             CCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC------------------CTTCCTTTTC----CTTHHHHHHHHHHH
T ss_pred             ccccCCChHhEEEecCCCcceEEEeecccceecCCCccc---c----ccCCCCCccCceeeecCCCCCCCchhhhHhHHH
Confidence            9999999999999741 1346999999999987654221   1    122455566666542   233344568888877


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       333 il~~ll  338 (419)
T 3i6u_A          333 ILFICL  338 (419)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665554

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.45  E-value=1.7e-13  Score=150.78  Aligned_cols=198  Identities=14%  Similarity=0.150  Sum_probs=112.3

Q ss_pred             CChhhhhcccCcccccccceeEEEEEEe----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHH
Q 004254          287 APLDDVFERFDVEPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVA  362 (765)
Q Consensus       287 ~~~eeiF~~fd~~PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~  362 (765)
                      ..+++.|. +..+.||.|++|.||+|+.    +|+.||||+....-..                                
T Consensus        16 ~~~~~~y~-~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~--------------------------------   62 (405)
T 3rgf_A           16 ERVEDLFE-YEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGIS--------------------------------   62 (405)
T ss_dssp             CCHHHHEE-CSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCC--------------------------------
T ss_pred             hhhhhhhh-hcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCC--------------------------------
Confidence            35566654 3446799999999999996    3789999987432100                                


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee-ccCCCeEEEEeecCCCChhhhhhhhh--------cCC
Q 004254          363 IYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQSLDE--------LGV  433 (765)
Q Consensus       363 i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~-e~st~~vLVMEyieG~~L~d~~~l~~--------~g~  433 (765)
                            .      .+.+|+..+.++    .+..-+.+-.++. +.....+|||||++| .+.++.....        ..+
T Consensus        63 ------~------~~~~E~~~l~~l----~hpniv~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l  125 (405)
T 3rgf_A           63 ------M------SACREIALLREL----KHPNVISLQKVFLSHADRKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQL  125 (405)
T ss_dssp             ------H------HHHHHHHHHHHC----CCTTBCCCCEEEEETTTTEEEEEEECCSE-EHHHHHHHHHHHC-------C
T ss_pred             ------H------HHHHHHHHHHhc----CCCCeeeEeeEEecCCCCeEEEEEeCCCC-CHHHHHHHhccccccccccCC
Confidence                  0      123444444443    2222233333443 224557999999997 4444332111        114


Q ss_pred             CHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEee--cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHH
Q 004254          434 DRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDD--VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKV  509 (765)
Q Consensus       434 d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~--~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i  509 (765)
                      +...+...+  +-..+..+|..|++|+|+||+||++..  ..++.++|+|||++..+....... ..  .....+++.++
T Consensus       126 ~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~-~~--~~~~~gt~~y~  202 (405)
T 3rgf_A          126 PRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPL-AD--LDPVVVTFWYR  202 (405)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC-------------------CCCTTC
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCccc-cc--CCCceecCccc
Confidence            444333333  334478899999999999999999942  136799999999998776432211 00  11123566778


Q ss_pred             HHHHHHc-CCCCCCCCHHHHHHHHHHHHH
Q 004254          510 LQAMVQM-GVLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       510 ~~~l~~l-G~~~~~~D~~~l~~~~~~~l~  537 (765)
                      ++++... +..++..|++++...+.+++.
T Consensus       203 aPE~~~~~~~~~~~~DiwSlG~il~ell~  231 (405)
T 3rgf_A          203 APELLLGARHYTKAIDIWAIGCIFAELLT  231 (405)
T ss_dssp             CHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             CchhhcCCCcccchhhhHHHHHHHHHHHh
Confidence            8887754 335667799999887766653

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.45  E-value=1.2e-13  Score=144.88  Aligned_cols=185  Identities=15%  Similarity=0.075  Sum_probs=107.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+....-.+.                                    .+      .
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~------------------------------------~~------~   54 (320)
T 2i6l_A           17 KPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQS------------------------------------VK------H   54 (320)
T ss_dssp             EECC-----CEEEEEETTTTEEEEEEEEECCSHHH------------------------------------HH------H
T ss_pred             EEeccCCCeEEEEEEECCCCeEEEEEEEecCChHH------------------------------------HH------H
Confidence            6899999999999999  49999999875432111                                    00      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee-------------ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH-
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW-------------EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA-  442 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~-------------e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l-  442 (765)
                      +.+|.+.+.++    .+..-+.+-.++.             ......++||||++| +|.++..  ....+...+...+ 
T Consensus        55 ~~~e~~~l~~l----~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~--~~~~~~~~~~~~~~  127 (320)
T 2i6l_A           55 ALREIKIIRRL----DHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMET-DLANVLE--QGPLLEEHARLFMY  127 (320)
T ss_dssp             HHHHHHHHHTC----CCTTBCCEEEEECTTSCBCCC----CCSCSEEEEEEECCSE-EHHHHHT--TCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCeeEEEEeccccccccccccccccccCceeEEeeccCC-CHHHHhh--cCCccHHHHHHHHH
Confidence            23444434333    2221122222221             112456899999996 7777643  3334444443332 


Q ss_pred             -HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCC
Q 004254          443 -VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLV  520 (765)
Q Consensus       443 -i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~  520 (765)
                       +...+..+|..|++|+|+||+||+++. .++.++|+|||++..+++.....-   .......+..+++++.... +..+
T Consensus       128 qi~~~l~~lH~~~i~H~dlkp~Nil~~~-~~~~~kl~Dfg~~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~  203 (320)
T 2i6l_A          128 QLLRGLKYIHSANVLHRDLKPANLFINT-EDLVLKIGDFGLARIMDPHYSHKG---HLSEGLVTKWYRSPRLLLSPNNYT  203 (320)
T ss_dssp             HHHHHHHHHHHTTCBCCCCSGGGEEEET-TTTEEEECCCTTCBCC-----------CCCGGGSCCTTCCHHHHHCTTCCC
T ss_pred             HHHHHHHHHHhCCEecCCCCHHHEEEcC-CCCeEEEccCccccccCCCccccc---ccccccccccccCcHHhcCcccCC
Confidence             234578899999999999999999974 367999999999988754321100   0001122444666666544 4455


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004254          521 PTGDTTAVRRTAQFFL  536 (765)
Q Consensus       521 ~~~D~~~l~~~~~~~l  536 (765)
                      +..|++++...+.+++
T Consensus       204 ~~~Di~slG~il~el~  219 (320)
T 2i6l_A          204 KAIDMWAAGCIFAEML  219 (320)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             chhhhHhHHHHHHHHH
Confidence            6678888887666554

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.45  E-value=1.1e-13  Score=148.53  Aligned_cols=196  Identities=15%  Similarity=0.127  Sum_probs=119.8

Q ss_pred             hhcccC-cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004254          292 VFERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (765)
Q Consensus       292 iF~~fd-~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (765)
                      .+..|. .+.||.|++|.||+|+.  +|+.||||+........                           ..        
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------------------~~--------   59 (351)
T 3mi9_A           15 EVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE---------------------------GF--------   59 (351)
T ss_dssp             BGGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSS---------------------------SS--------
T ss_pred             cccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccc---------------------------cc--------
Confidence            334454 37899999999999999  69999999875432111                           00        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeecc-------CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH
Q 004254          369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY-------TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY  441 (765)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~-------st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~  441 (765)
                           ...+.+|++.+..+.    +..-+.+-.++...       .+..++||||++| .+.+........++...+...
T Consensus        60 -----~~~~~~E~~~l~~l~----h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i  129 (351)
T 3mi9_A           60 -----PITALREIKILQLLK----HENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRV  129 (351)
T ss_dssp             -----CHHHHHHHHHHHHCC----CTTBCCEEEEEEEC--------CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHH
T ss_pred             -----hHHHHHHHHHHHhcc----CCCcccHhheeeccccccccCCceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHH
Confidence                 012334555444442    22222232333221       2356999999998 444432222233555544433


Q ss_pred             HH--HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CC
Q 004254          442 AV--ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GV  518 (765)
Q Consensus       442 li--~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~  518 (765)
                      +.  -..+..+|..|++|+|+||+||+++.  ++.++|+|||++..++.........  .....+++.++++++..- ..
T Consensus       130 ~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~--~~~~kl~Dfg~a~~~~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~  205 (351)
T 3mi9_A          130 MQMLLNGLYYIHRNKILHRDMKAANVLITR--DGVLKLADFGLARAFSLAKNSQPNR--YTNRVVTLWYRPPELLLGERD  205 (351)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCSGGGEEECT--TSCEEECCCTTCEECCCCSSSSCCC--CCSSCSCGGGCCHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHCCeeCCCCCHHHEEEcC--CCCEEEccchhcccccccccccccc--cCCcccccCccCchhhcCCCC
Confidence            33  33478899999999999999999985  8899999999998765211100000  001124666778887643 34


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 004254          519 LVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       519 ~~~~~D~~~l~~~~~~~l  536 (765)
                      .++..|++++...+.+++
T Consensus       206 ~~~~~DiwslG~il~ell  223 (351)
T 3mi9_A          206 YGPPIDLWGAGCIMAEMW  223 (351)
T ss_dssp             CCTHHHHHHHHHHHHHHH
T ss_pred             CCcHhHHHHHHHHHHHHH
Confidence            567789999987766654

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.45  E-value=4.6e-14  Score=148.60  Aligned_cols=193  Identities=13%  Similarity=0.051  Sum_probs=121.2

Q ss_pred             ccC-cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          295 RFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       295 ~fd-~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      .|. .+.||+|++|.||+|+.  +|+.||||+.+........                                    ..
T Consensus        32 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~------------------------------------~~   75 (312)
T 2iwi_A           32 EYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWS------------------------------------PL   75 (312)
T ss_dssp             -CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC-----------------------------------------
T ss_pred             ceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccc------------------------------------cc
Confidence            444 37899999999999998  6899999998554221100                                    00


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEee-cCCCChhhhhhhhhcCCCHHHHHHHH--HHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEY-VPGIKINRIQSLDELGVDRKRLGRYA--VESY  446 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEy-ieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~  446 (765)
                      .....+.+|...+.++.....+ ++  +++++.  ......+++||| ++|++|.++... ...++...+...+  +...
T Consensus        76 ~~~~~~~~e~~~l~~l~~~~~h-~~--i~~~~~~~~~~~~~~~v~e~~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~~  151 (312)
T 2iwi_A           76 SDSVTCPLEVALLWKVGAGGGH-PG--VIRLLDWFETQEGFMLVLERPLPAQDLFDYITE-KGPLGEGPSRCFFGQVVAA  151 (312)
T ss_dssp             ---CCCCHHHHHHHHHHSSCCC-SS--BCCEEEEC-----CEEEEECCSSEEEHHHHHHH-HCSCCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhhcccCCC-CC--eeeEEEEEecCCeEEEEEEecCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHH
Confidence            1122344566666666433222 22  333333  234567999999 899999987542 2234544444333  2334


Q ss_pred             HHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC-CCCCH
Q 004254          447 LEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV-PTGDT  525 (765)
Q Consensus       447 L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~-~~~D~  525 (765)
                      +..+|..|++|+|+||+||+++. .++.++|+|||++..+......        ...++..++++++...+... ...|+
T Consensus       152 l~~lH~~~i~H~dlkp~Nil~~~-~~~~~kl~dfg~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~Di  222 (312)
T 2iwi_A          152 IQHCHSRGVVHRDIKDENILIDL-RRGCAKLIDFGSGALLHDEPYT--------DFDGTRVYSPPEWISRHQYHALPATV  222 (312)
T ss_dssp             HHHHHHHTEECCCCSGGGEEEET-TTTEEEECCCSSCEECCSSCBC--------CCCSCTTTSCHHHHHHSCBCHHHHHH
T ss_pred             HHHHHHCCeeecCCChhhEEEeC-CCCeEEEEEcchhhhcccCccc--------ccCCcccccCceeeecCCCCCccchH
Confidence            78899999999999999999983 3789999999999877653211        12355667777776654432 25688


Q ss_pred             HHHHHHHHHHH
Q 004254          526 TAVRRTAQFFL  536 (765)
Q Consensus       526 ~~l~~~~~~~l  536 (765)
                      +++...+.+++
T Consensus       223 ~slG~il~~l~  233 (312)
T 2iwi_A          223 WSLGILLYDMV  233 (312)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88877665554

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.44  E-value=1.2e-13  Score=154.07  Aligned_cols=186  Identities=16%  Similarity=0.058  Sum_probs=112.7

Q ss_pred             cccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      .+.||.|++|.||.+.. +|+.||||+..++..+                                             .
T Consensus        20 ~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~~~---------------------------------------------~   54 (434)
T 2rio_A           20 EKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCD---------------------------------------------I   54 (434)
T ss_dssp             EEEEEECSTTCEEEEEESSSSEEEEEEEEGGGHH---------------------------------------------H
T ss_pred             cCeEeeCCCeEEEEEEEECCeEEEEEEEcHHHHH---------------------------------------------H
Confidence            47899999999976655 8999999987432111                                             1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCC---------CHHHHHHHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGV---------DRKRLGRYAVESYL  447 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~---------d~~~ia~~li~~~L  447 (765)
                      +.+|.+.+.++.    ++++|.-..-+.......+|||||++| +|.++........         ....++.. +...+
T Consensus        55 ~~~E~~~l~~l~----~HpnIv~~~~~~~~~~~~~lv~E~~~g-sL~~~l~~~~~~~~~~~~~~~~~~~~i~~q-i~~aL  128 (434)
T 2rio_A           55 ALMEIKLLTESD----DHPNVIRYYCSETTDRFLYIALELCNL-NLQDLVESKNVSDENLKLQKEYNPISLLRQ-IASGV  128 (434)
T ss_dssp             HHHHHHHHHHHT----TSTTBCCEEEEEECSSEEEEEECCCSE-EHHHHHHTC------------CCHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHhcc----CCCCcCeEEEEEecCCeEEEEEecCCC-CHHHHHhccCCCchhhhhccchhHHHHHHH-HHHHH
Confidence            123333333321    233332222222334456999999976 8888654221111         11123333 33457


Q ss_pred             HHHHhCCccccCCCCCcEEEeec-----------CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004254          448 EQILSHGFFHADPHPGNIAVDDV-----------NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  516 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~-----------~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l  516 (765)
                      ..+|..|++|+|+||+||+++..           .++.++|+|||++..++........  ......+++.++++++..-
T Consensus       129 ~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~  206 (434)
T 2rio_A          129 AHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRT--NLNNPSGTSGWRAPELLEE  206 (434)
T ss_dssp             HHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC----------------CCTTSCHHHHSC
T ss_pred             HHHHHCCccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCcccee--eecCCCCCCCccCHHHhcc
Confidence            88999999999999999999741           2348999999999988764321110  0112346778889998864


Q ss_pred             -------CCCCCCCCHHHHHHHHHHHH
Q 004254          517 -------GVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       517 -------G~~~~~~D~~~l~~~~~~~l  536 (765)
                             +..++..|++++...+.+++
T Consensus       207 ~~~~~~~~~~~~~~DiwSlG~il~ell  233 (434)
T 2rio_A          207 SNNLQTKRRLTRSIDIFSMGCVFYYIL  233 (434)
T ss_dssp             CCTTSCCCCCCTHHHHHHHHHHHHHHH
T ss_pred             ccccccccCcchhhhhHhHHHHHHHHH
Confidence                   44566789999987766654

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.44  E-value=4.7e-13  Score=140.63  Aligned_cols=149  Identities=13%  Similarity=0.138  Sum_probs=97.3

Q ss_pred             hhhhcccCc--ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHH
Q 004254          290 DDVFERFDV--EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (765)
Q Consensus       290 eeiF~~fd~--~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~  365 (765)
                      ++++..+..  +.||.|++|.||+|+.  +|+.||||+.+..-                                     
T Consensus        13 ~~~~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-------------------------------------   55 (299)
T 3m2w_A           13 NAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCP-------------------------------------   55 (299)
T ss_dssp             SCGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSH-------------------------------------
T ss_pred             cccccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecccH-------------------------------------
Confidence            345555543  6799999999999998  69999999873210                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeecc---CCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHH
Q 004254          366 ECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY---TTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRY  441 (765)
Q Consensus       366 E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~---st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~  441 (765)
                                .+.+|...+.+.   ..+..-+.+-.++...   ....++||||++|++|.++..... ..++...+...
T Consensus        56 ----------~~~~e~~~~~~~---~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i  122 (299)
T 3m2w_A           56 ----------KARREVELHWRA---SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEI  122 (299)
T ss_dssp             ----------HHHHHHHHHHHH---TTSTTBCCEEEEEEEEETTEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHH
T ss_pred             ----------HHHHHHHHHHHh---ccCCCchhHHhhhhhhcCCCceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHH
Confidence                      111222222221   1222222233333221   334699999999999998754322 23555544444


Q ss_pred             HHH--HHHHHHHhCCccccCCCCCcEEEeecC-CCcEEEEeecceeccCh
Q 004254          442 AVE--SYLEQILSHGFFHADPHPGNIAVDDVN-GGRLIFYDFGMMGSISP  488 (765)
Q Consensus       442 li~--~~L~qi~~~GffHaDpHPGNILV~~~~-~g~l~LiDFGlv~~L~~  488 (765)
                      +.+  ..+..+|..|++|+|+||.||+++... ++.++|+|||++..+..
T Consensus       123 ~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~  172 (299)
T 3m2w_A          123 MKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTG  172 (299)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTT
T ss_pred             HHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEecccccccccc
Confidence            333  347889999999999999999998522 57899999999987764

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.43  E-value=1e-13  Score=147.55  Aligned_cols=189  Identities=13%  Similarity=0.095  Sum_probs=121.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.++.......              .. .                     .+-.
T Consensus        49 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~--------------~~-~---------------------~~~~   92 (320)
T 3a99_A           49 PLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWG--------------EL-P---------------------NGTR   92 (320)
T ss_dssp             EECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEE--------------EC-T---------------------TCCE
T ss_pred             EEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhh--------------hh-h---------------------hhhH
Confidence            6899999999999998  6999999998553211100              00 0                     0012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCC-CChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPG-IKINRIQSLDELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG-~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      +.+|+..+.++..   .++++.-..-+.......+++|||+++ ++|.++... ...++...+...+  +...+..+|..
T Consensus        93 ~~~E~~~l~~l~~---~~~~i~~~~~~~~~~~~~~lv~e~~~~~~~L~~~l~~-~~~l~~~~~~~i~~qi~~~L~~LH~~  168 (320)
T 3a99_A           93 VPMEVVLLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITE-RGALQEELARSFFWQVLEAVRHCHNC  168 (320)
T ss_dssp             EEHHHHHHHHHCS---SSCSBCCEEEEEECSSEEEEEEECCSSEEEHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhcc---CCCCceEEEEEEecCCcEEEEEEcCCCCccHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            2344444544432   223332222222344567999999986 788876532 2334544443333  23447889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~-~~~~D~~~l~~~~  532 (765)
                      |++|+|+||+||+++. +++.++|+|||++..+......        ...++..++++++...+.. .+..|++++...+
T Consensus       169 ~ivH~Dlkp~NIll~~-~~~~~kL~Dfg~~~~~~~~~~~--------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il  239 (320)
T 3a99_A          169 GVLHRDIKDENILIDL-NRGELKLIDFGSGALLKDTVYT--------DFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILL  239 (320)
T ss_dssp             TEECCCCSGGGEEEET-TTTEEEECCCTTCEECCSSCBC--------CCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHH
T ss_pred             CcEeCCCCHHHEEEeC-CCCCEEEeeCcccccccccccc--------CCCCCccCCChHHhccCCCCCccchHHhHHHHH
Confidence            9999999999999983 3789999999999887653211        1235667788887765543 4456888888766


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       240 ~el~  243 (320)
T 3a99_A          240 YDMV  243 (320)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.43  E-value=3.8e-13  Score=144.25  Aligned_cols=184  Identities=16%  Similarity=0.158  Sum_probs=103.5

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||.|++|.||+|+.  +|+.||||+...+....                             .              
T Consensus        28 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-----------------------------~--------------   64 (360)
T 3e3p_A           28 ERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFR-----------------------------N--------------   64 (360)
T ss_dssp             C----------CEEEEETTTCCEEEEEEEECCTTCC-----------------------------C--------------
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEEecCcccc-----------------------------H--------------
Confidence            37899999999999998  59999999874421110                             0              


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccCC------CeEEEEeecCCCChhhhhhh--hhcCCCHHHHHHHH--HHH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTT------PQILTMEYVPGIKINRIQSL--DELGVDRKRLGRYA--VES  445 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st------~~vLVMEyieG~~L~d~~~l--~~~g~d~~~ia~~l--i~~  445 (765)
                      .+..|.+.+..+    .+..-+.+-.++.....      ..++||||++|.....+...  .....+...+...+  +..
T Consensus        65 ~~~~~~~~l~~l----~h~niv~~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~  140 (360)
T 3e3p_A           65 RELQIMQDLAVL----HHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIR  140 (360)
T ss_dssp             HHHHHHHHHHHH----CCTTBCCEEEEEEEECSSCTTCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc----CCCCcccHHHhhhccccccccceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHH
Confidence            011222222222    22222222233322111      15899999998644333221  12233333333322  223


Q ss_pred             HHHHHH--hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCC
Q 004254          446 YLEQIL--SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPT  522 (765)
Q Consensus       446 ~L~qi~--~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~  522 (765)
                      .+..+|  ..|++|+|+||+||+++. .++.++|+|||++..++......       ...++..++++++..- ...++.
T Consensus       141 al~~lH~~~~~ivH~Dlkp~NIll~~-~~~~~kl~Dfg~a~~~~~~~~~~-------~~~gt~~y~aPE~~~~~~~~~~~  212 (360)
T 3e3p_A          141 SIGCLHLPSVNVCHRDIKPHNVLVNE-ADGTLKLCDFGSAKKLSPSEPNV-------AYICSRYYRAPELIFGNQHYTTA  212 (360)
T ss_dssp             HHHHHTSTTTCCBCSCCCGGGEEEET-TTTEEEECCCTTCBCCCTTSCCC-------STTSCGGGCCHHHHTTCSSCCTH
T ss_pred             HHHHHhCCCCCeecCcCCHHHEEEeC-CCCcEEEeeCCCceecCCCCCcc-------cccCCcceeCHHHHcCCCCCCcH
Confidence            467788  999999999999999984 37899999999998876543210       1234667788887743 335677


Q ss_pred             CCHHHHHHHHHHHH
Q 004254          523 GDTTAVRRTAQFFL  536 (765)
Q Consensus       523 ~D~~~l~~~~~~~l  536 (765)
                      .|++++...+.+++
T Consensus       213 ~Di~slG~il~ell  226 (360)
T 3e3p_A          213 VDIWSVGCIFAEMM  226 (360)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            89999987766654

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.43  E-value=1.4e-13  Score=150.15  Aligned_cols=118  Identities=19%  Similarity=0.225  Sum_probs=78.7

Q ss_pred             eEEEEeecCCCChhhhhhh---hhcCCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeeccee
Q 004254          410 QILTMEYVPGIKINRIQSL---DELGVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMG  484 (765)
Q Consensus       410 ~vLVMEyieG~~L~d~~~l---~~~g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~  484 (765)
                      .++||||++| +|.+....   ....++...+...+  +-..+..+|..|++|+|+||+||+++. .++.++|+|||++.
T Consensus       113 ~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~gi~H~Dikp~Nil~~~-~~~~~kl~Dfg~a~  190 (383)
T 3eb0_A          113 LNVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNS-KDNTLKLCDFGSAK  190 (383)
T ss_dssp             EEEEECCCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEEET-TTTEEEECCCTTCE
T ss_pred             EEEEEecCCc-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCcCccCccCHHHEEEcC-CCCcEEEEECCCCc
Confidence            5799999997 55553321   12234444333332  234478899999999999999999973 37899999999998


Q ss_pred             ccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHHHHHH
Q 004254          485 SISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       485 ~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~~~~~~l  536 (765)
                      .+.+.....       ...++..++++++.... ..++..|++++...+.+++
T Consensus       191 ~~~~~~~~~-------~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell  236 (383)
T 3eb0_A          191 KLIPSEPSV-------AYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELI  236 (383)
T ss_dssp             ECCTTSCCC-------CCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCc-------CcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHH
Confidence            775432110       11235556777766532 3566779999887766654

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.42  E-value=6.7e-14  Score=146.45  Aligned_cols=190  Identities=16%  Similarity=0.121  Sum_probs=116.1

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||+|++|.||+|..  +|+.||||+.+......                  .                    -..+-
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~------------------~--------------------~~~~~   51 (305)
T 2wtk_C           10 GDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRR------------------I--------------------PNGEA   51 (305)
T ss_dssp             CCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHH------------------S--------------------TTHHH
T ss_pred             eeEEecCCCeEEEEEEECCCCcEEEEEEeccccccc------------------c--------------------chhHH
Confidence            37899999999999999  68999999884321000                  0                    00112


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeee-ccCCCeEEEEeecCCCChhhhh-hhhhcCCCHHHHHHHHH--HHHHHHHH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFW-EYTTPQILTMEYVPGIKINRIQ-SLDELGVDRKRLGRYAV--ESYLEQIL  451 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~-e~st~~vLVMEyieG~~L~d~~-~l~~~g~d~~~ia~~li--~~~L~qi~  451 (765)
                      .+.+|++.+.++    .+..-+.+-.++. +.....++||||++|+ +.+.. ......++...+...+.  -..+..+|
T Consensus        52 ~~~~E~~~l~~l----~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH  126 (305)
T 2wtk_C           52 NVKKEIQLLRRL----RHKNVIQLVDVLYNEEKQKMYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLH  126 (305)
T ss_dssp             HHHHHHHHHTTC----CCTTBCCEEEEEECC---CEEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc----CCCCeeEEEEEEEcCCCCeEEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHH
Confidence            344555544443    2222222333322 2234679999999987 44432 22233455554444333  34478899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC--CCCCCCHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV--LVPTGDTTAVR  529 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~--~~~~~D~~~l~  529 (765)
                      ..|++|+|+||+||+++.  ++.++|+|||++..+.+......    .....++..++++++....-  .+...|++++.
T Consensus       127 ~~~i~H~dlkp~NIl~~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG  200 (305)
T 2wtk_C          127 SQGIVHKDIKPGNLLLTT--GGTLKISALGVAEALHPFAADDT----CRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAG  200 (305)
T ss_dssp             HTTEECSCCSGGGEEECT--TCCEEECCCTTCEECCTTCSSCE----ECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHH
T ss_pred             HCCeeecCCCcccEEEcC--CCcEEeeccccccccCccccccc----cccCCCCCCCcChhhccCcccCCcchhhHHHHH
Confidence            999999999999999985  88999999999987653211100    00123566777788775321  13456888887


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+.+++
T Consensus       201 ~il~~l~  207 (305)
T 2wtk_C          201 VTLYNIT  207 (305)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665554

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.41  E-value=3.2e-13  Score=140.64  Aligned_cols=184  Identities=15%  Similarity=0.119  Sum_probs=115.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.++.....                          .+.              -.
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~--------------------------~~~--------------~~   67 (287)
T 2wei_A           28 CMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN--------------------------KDT--------------ST   67 (287)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSS--------------------------SCH--------------HH
T ss_pred             EEEcCCCCEEEEEEEEcCCCcEEEEEEecccccch--------------------------HHH--------------HH
Confidence            6899999999999999  69999999985432110                          000              12


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|++.+.++    . +++|.-..-+.......+++|||++|++|.+.... ...++...+...+.+  ..+..+|..|
T Consensus        68 ~~~e~~~l~~l----~-h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~  141 (287)
T 2wei_A           68 ILREVELLKKL----D-HPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIK-RKRFSEHDAARIIKQVFSGITYMHKHN  141 (287)
T ss_dssp             HHHHHHHHHTC----C-CTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhc----c-CCCccEEEEEEeCCCeEEEEEEccCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            33455444433    2 23332222222335667999999999999875432 234555544444333  3478899999


Q ss_pred             ccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|++|.||+++.. .++.++|+|||++..+.......-       ..++..+++++... |..++..|++++...+.
T Consensus       142 i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~~~-------~~~~~~y~aPE~~~-~~~~~~~Di~slG~~l~  213 (287)
T 2wei_A          142 IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKD-------RIGTAYYIAPEVLR-GTYDEKCDVWSAGVILY  213 (287)
T ss_dssp             CCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSSCSC-------HHHHHTTCCHHHHT-TCCCTHHHHHHHHHHHH
T ss_pred             eeccCCChhhEEEecCCCcccEEEeccCcceeecCCCcccc-------ccCcccccChHHhc-CCCCCchhhHhHHHHHH
Confidence            9999999999999752 134799999999887654321100       01233445566554 44566778998887665


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       214 ~l~  216 (287)
T 2wei_A          214 ILL  216 (287)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.41  E-value=5.1e-13  Score=142.03  Aligned_cols=184  Identities=16%  Similarity=0.130  Sum_probs=115.0

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +.||+|++|.||+|+.+|+.||||+..+...+                                             ++.
T Consensus        48 ~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~---------------------------------------------~~~   82 (342)
T 1b6c_B           48 ESIGKGRFGEVWRGKWRGEEVAVKIFSSREER---------------------------------------------SWF   82 (342)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEEECGGGHH---------------------------------------------HHH
T ss_pred             eeecCCCCcEEEEEEEcCccEEEEEeCchhHH---------------------------------------------HHH
Confidence            68999999999999999999999987432111                                             122


Q ss_pred             HHHHHHHHHHHhcCCCCcc-ccceeeeccC---CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH-
Q 004254          379 QEAANAELFASNFKDMDYV-KVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL-  451 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~s---t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~-  451 (765)
                      +|+..+....  + .+++| .+-.++....   ...++||||++|++|.++..  ...++...+...+.+  ..+..+| 
T Consensus        83 ~e~~~~~~~~--l-~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~--~~~~~~~~~~~i~~~i~~~l~~lH~  157 (342)
T 1b6c_B           83 REAEIYQTVM--L-RHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLN--RYTVTVEGMIKLALSTASGLAHLHM  157 (342)
T ss_dssp             HHHHHHHHSC--C-CCTTBCCEEEEEECCCSSCCCEEEEECCCTTCBHHHHHH--HCCBCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhh--c-CCCcEEEEEeeecccCCccceeEEEEeecCCCcHHHHHh--ccCccHHHHHHHHHHHHHHHHHHHH
Confidence            3333222210  2 22332 2222222211   25799999999999998753  334555544444333  3478889 


Q ss_pred             -------hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC----
Q 004254          452 -------SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV----  520 (765)
Q Consensus       452 -------~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~----  520 (765)
                             ..|++|+|+||.||+++.  +++++|+|||++..++......  ........++..++++++...+...    
T Consensus       158 ~~~~~~~~~~ivH~Dlkp~NIll~~--~~~~kL~Dfg~~~~~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~  233 (342)
T 1b6c_B          158 EIVGTQGKPAIAHRDLKSKNILVKK--NGTCCIADLGLAVRHDSATDTI--DIAPNHRVGTKRYMAPEVLDDSINMKHFE  233 (342)
T ss_dssp             CBCSTTCBCEEECSCCSGGGEEECT--TSCEEECCCTTCEEEETTTTEE--EECCCSCCCCGGGCCHHHHTSCCCTTCHH
T ss_pred             HHhhhcccCCeeeCCCCHHHEEECC--CCCEEEEECCCceecccccccc--ccccccCCcCcccCCHhhhcccccccccc
Confidence                   899999999999999985  8899999999998765432100  0000011356677788877644221    


Q ss_pred             --CCCCHHHHHHHHHHHH
Q 004254          521 --PTGDTTAVRRTAQFFL  536 (765)
Q Consensus       521 --~~~D~~~l~~~~~~~l  536 (765)
                        +..|++++...+.+++
T Consensus       234 ~~~~~Di~slG~il~el~  251 (342)
T 1b6c_B          234 SFKRADIYAMGLVFWEIA  251 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             cCCcccHHHHHHHHHHHH
Confidence              2357777766555443

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.40  E-value=3.8e-13  Score=140.08  Aligned_cols=182  Identities=12%  Similarity=0.028  Sum_probs=115.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ..||+|++|.||+|..  ++..||+|+........                                  +-..      .
T Consensus        32 ~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~----------------------------------~~~~------~   71 (290)
T 1t4h_A           32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTK----------------------------------SERQ------R   71 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCH----------------------------------HHHH------H
T ss_pred             eeccCCCCeEEEEeEecCCceEEEEEEecchhhCH----------------------------------HHHH------H
Confidence            4699999999999998  58999999874321110                                  0011      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeecc---CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEY---TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  450 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~---st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi  450 (765)
                      +.+|+..+..+    . +++| .+-.++...   ....++||||++|++|.++... ....+...+...+  +...+..+
T Consensus        72 ~~~e~~~l~~l----~-h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~~l~~l  145 (290)
T 1t4h_A           72 FKEEAEMLKGL----Q-HPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKR-FKVMKIKVLRSWCRQILKGLQFL  145 (290)
T ss_dssp             HHHHHHHHTTC----C-CTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----C-CCCeeeeeeeeccccCCCceEEEEEEecCCCCHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHH
Confidence            33444433333    2 2322 222222211   1235999999999999987542 2334544443333  23447889


Q ss_pred             HhCC--ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          451 LSHG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       451 ~~~G--ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      |..|  ++|+|+||.||+++. .++.++|+|||++..........        ..+++.++++++.. +..++..|++++
T Consensus       146 H~~~~~i~H~dikp~Nil~~~-~~~~~kl~Dfg~~~~~~~~~~~~--------~~~t~~y~aPE~~~-~~~~~~~Di~sl  215 (290)
T 1t4h_A          146 HTRTPPIIHRDLKCDNIFITG-PTGSVKIGDLGLATLKRASFAKA--------VIGTPEFMAPEMYE-EKYDESVDVYAF  215 (290)
T ss_dssp             HTSSSCCCCSCCCGGGEEESS-TTSCEEECCTTGGGGCCTTSBEE--------SCSSCCCCCGGGGG-TCCCTHHHHHHH
T ss_pred             HcCCCCEEECCCCHHHEEEEC-CCCCEEEeeCCCccccccccccc--------ccCCcCcCCHHHHh-ccCCCcchHHHH
Confidence            9999  999999999999973 37899999999987655432111        12445556666554 445667799988


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      ...+.+++
T Consensus       216 G~~l~~l~  223 (290)
T 1t4h_A          216 GMCMLEMA  223 (290)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87766554

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.40  E-value=3.3e-13  Score=149.82  Aligned_cols=180  Identities=19%  Similarity=0.204  Sum_probs=112.1

Q ss_pred             cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .+.||.|++|.||+|++  +|+.||||+...+....                                            
T Consensus        59 ~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~~~--------------------------------------------   94 (420)
T 1j1b_A           59 TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK--------------------------------------------   94 (420)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEECCTTSC--------------------------------------------
T ss_pred             eeEEeeCCCEEEEEEEECCCCcEEEEEEecccchhH--------------------------------------------
Confidence            46899999999999999  59999999874431100                                            


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccccceeeeccC---C--CeEEEEeecCCCChhhhh-hh--hhcCCCHHHHHHHH--HHH
Q 004254          376 DYTQEAANAELFASNFKDMDYVKVPTIFWEYT---T--PQILTMEYVPGIKINRIQ-SL--DELGVDRKRLGRYA--VES  445 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s---t--~~vLVMEyieG~~L~d~~-~l--~~~g~d~~~ia~~l--i~~  445 (765)
                        .+|.+.+.++    .+..-|.+..++....   .  ..+|||||++|. +.+.. ..  ....++...+...+  +-.
T Consensus        95 --~~E~~il~~l----~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~l~~~~~~~~~~qi~~  167 (420)
T 1j1b_A           95 --NRELQIMRKL----DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPET-VYRVARHYSRAKQTLPVIYVKLYMYQLFR  167 (420)
T ss_dssp             --CHHHHHHHTC----CCTTBCCEEEEEEEEETTTTEEEEEEEEECCCEE-HHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHc----CCCCccceeeEEeccCCCCcceeEEeehhccccc-HHHHHHHHhhccCCCCHHHHHHHHHHHHH
Confidence              1233333222    2222233333332111   1  146899999984 33322 11  12234444333332  233


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCC
Q 004254          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGD  524 (765)
Q Consensus       446 ~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D  524 (765)
                      .+..+|..|++|+|+||+|||++. +++.++|+|||++..+......       .-..++..+++++++.- .......|
T Consensus       168 aL~~LH~~~ivHrDlkp~NILl~~-~~~~~kl~DFG~a~~~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~~~D  239 (420)
T 1j1b_A          168 SLAYIHSFGICHRDIKPQNLLLDP-DTAVLKLCDFGSAKQLVRGEPN-------VSYICSRYYRAPELIFGATDYTSSID  239 (420)
T ss_dssp             HHHHHHTTTEECSCCSGGGEEEET-TTTEEEECCCTTCEECCTTCCC-------CSCCSCTTSCCHHHHTTCSSCCTHHH
T ss_pred             HHHHHHHCCccccCCChhhEEEeC-CCCeEEeccchhhhhcccCCCc-------eeeeeCCCcCCHHHHcCCCCCCchhh
Confidence            478899999999999999999984 3467899999999877543211       01234566788887743 24566779


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++.-.+.+++
T Consensus       240 iwSlG~il~ell  251 (420)
T 1j1b_A          240 VWSAGCVLAELL  251 (420)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            999987776665

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.38  E-value=3.7e-13  Score=150.36  Aligned_cols=184  Identities=14%  Similarity=0.108  Sum_probs=109.6

Q ss_pred             ccccccceeEE-EEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQV-HRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQV-hrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||.|++|+| |++..+|+.||||+..+.......                                            
T Consensus        30 ~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~~~~--------------------------------------------   65 (432)
T 3p23_A           30 DVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFAD--------------------------------------------   65 (432)
T ss_dssp             EEEEECGGGCEEEEEESSSSEEEEEEECTTTEEECH--------------------------------------------
T ss_pred             CeeecCcCEEEEEEEEeCCeEEEEEEECHHHHHHHH--------------------------------------------
Confidence            68999999995 444558999999988664332211                                            


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcC---CCHHHHHHHHHHHHHHHHHhCC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELG---VDRKRLGRYAVESYLEQILSHG  454 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g---~d~~~ia~~li~~~L~qi~~~G  454 (765)
                       +|.+.+..    +..+++|.-..-+.......+|||||++| +|.++.......   .....++.. +...+..+|..|
T Consensus        66 -~E~~~l~~----l~~HpnIv~l~~~~~~~~~~~lv~E~~~g-~L~~~l~~~~~~~~~~~~~~i~~q-i~~aL~~LH~~~  138 (432)
T 3p23_A           66 -REVQLLRE----SDEHPNVIRYFCTEKDRQFQYIAIELCAA-TLQEYVEQKDFAHLGLEPITLLQQ-TTSGLAHLHSLN  138 (432)
T ss_dssp             -HHHHHHHH----SCCCTTBCCEEEEEEETTEEEEEEECCSE-EHHHHHHSSSCCCCSSCHHHHHHH-HHHHHHHHHHTT
T ss_pred             -HHHHHHHh----ccCCCCcCeEEEEEecCCEEEEEEECCCC-CHHHHHHhcCCCccchhHHHHHHH-HHHHHHHHHHCc
Confidence             22222222    11234332222222334556999999987 777754332222   223344433 334578899999


Q ss_pred             ccccCCCCCcEEEeec---CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc---CCCCCCCCHHHH
Q 004254          455 FFHADPHPGNIAVDDV---NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM---GVLVPTGDTTAV  528 (765)
Q Consensus       455 ffHaDpHPGNILV~~~---~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l---G~~~~~~D~~~l  528 (765)
                      ++|+|+||+||+++..   ...+++|+|||++..+...... +..  .....+++.+++++++.-   +..+...|++++
T Consensus       139 ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~-~~~--~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSl  215 (432)
T 3p23_A          139 IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHS-FSR--RSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSA  215 (432)
T ss_dssp             CCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC---------------CCSCTTSCCGGGTSCC---CCCTHHHHHHH
T ss_pred             CEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcc-eee--ccccCCCcCccChhhhhcccccCCCcHHHHHHH
Confidence            9999999999999631   1236889999999988654221 110  112346777888887652   333445789998


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      ...+.+++
T Consensus       216 G~il~ell  223 (432)
T 3p23_A          216 GCVFYYVI  223 (432)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87766554

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.36  E-value=1.8e-13  Score=160.95  Aligned_cols=190  Identities=17%  Similarity=0.160  Sum_probs=121.9

Q ss_pred             hcccC-cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004254          293 FERFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (765)
Q Consensus       293 F~~fd-~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (765)
                      +..|. .+.||.|++|.||+|+.  +|+.||||+.++.....                                      
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~--------------------------------------   54 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPK--------------------------------------   54 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHH--------------------------------------
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHH--------------------------------------
Confidence            34444 37899999999999998  69999999886543211                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeec-----cCCCeEEEEeecCCCChhhhhhhhhc--CCCHHHHHHH
Q 004254          370 VLYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWE-----YTTPQILTMEYVPGIKINRIQSLDEL--GVDRKRLGRY  441 (765)
Q Consensus       370 ~l~~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e-----~st~~vLVMEyieG~~L~d~~~l~~~--g~d~~~ia~~  441 (765)
                         ..-++.+|++.+.++.     +++| .+-.++..     .....++||||++|++|.++......  +++...+...
T Consensus        55 ---~~~~~~~Ei~iL~~L~-----HpnIV~l~~v~~~~~~~~~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I  126 (676)
T 3qa8_A           55 ---NRERWCLEIQIMKKLN-----HPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTL  126 (676)
T ss_dssp             ---HHHHHHHHHHHHHHCC-----BTTBCCEEECCTTTCCCCTTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHH
T ss_pred             ---HHHHHHHHHHHHHhCC-----CCCCCceeeeecccccccCCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHH
Confidence               0113455665555542     2322 22222211     14456999999999999987543221  2333333332


Q ss_pred             H--HHHHHHHHHhCCccccCCCCCcEEEeecCCC---cEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc
Q 004254          442 A--VESYLEQILSHGFFHADPHPGNIAVDDVNGG---RLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM  516 (765)
Q Consensus       442 l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g---~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l  516 (765)
                      +  +...+..+|..|++|+|+||+||+++.  ++   .++|+|||++..++.....       ....++..++++++...
T Consensus       127 ~~QLl~aL~yLHs~gIVHrDLKP~NILl~~--~g~~~~vKL~DFG~a~~~~~~~~~-------~~~~gt~~Y~APE~l~~  197 (676)
T 3qa8_A          127 LSDISSALRYLHENRIIHRDLKPENIVLQP--GPQRLIHKIIDLGYAKELDQGELC-------TEFVGTLQYLAPELLEQ  197 (676)
T ss_dssp             HHHHHHHHHHHHHTTBCCCCCCSTTEEEEC--CSSSCEEEECSCCCCCBTTSCCCC-------CCCCSCCTTCSSCSSCC
T ss_pred             HHHHHHHHHHHHHCCCccCCCCHHHeEeec--CCCceeEEEccccccccccccccc-------ccccCCcccCChHHhcc
Confidence            2  334578899999999999999999985  44   3899999999887653211       01234556666766665


Q ss_pred             CCCCCCCCHHHHHHHHHHHHH
Q 004254          517 GVLVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       517 G~~~~~~D~~~l~~~~~~~l~  537 (765)
                      +..++..|++++...+.+++.
T Consensus       198 ~~~s~ksDIwSLGviLyeLlt  218 (676)
T 3qa8_A          198 KKYTVTVDYWSFGTLAFECIT  218 (676)
T ss_dssp             SCCSTTHHHHHHHHHHHHHHS
T ss_pred             CCCCchhHHHHHHHHHHHHHH
Confidence            666777899999887766653

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.36  E-value=9.4e-13  Score=144.79  Aligned_cols=181  Identities=19%  Similarity=0.195  Sum_probs=112.4

Q ss_pred             cccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      .+.||.|++|.||+|+. .+..||||.........                                             
T Consensus        45 ~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~~---------------------------------------------   79 (394)
T 4e7w_A           45 CKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFK---------------------------------------------   79 (394)
T ss_dssp             EEEEEEETTEEEEEEEETTTEEEEEEEEECCTTSC---------------------------------------------
T ss_pred             eEEEeeCCCeEEEEEEECCCCeEEEEEEecCcchH---------------------------------------------
Confidence            36899999999999999 56679999764321100                                             


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCC-----CeEEEEeecCCCChhhhhhhh--hcCCCHHHHHHHH--HHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTT-----PQILTMEYVPGIKINRIQSLD--ELGVDRKRLGRYA--VESYL  447 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st-----~~vLVMEyieG~~L~d~~~l~--~~g~d~~~ia~~l--i~~~L  447 (765)
                       .+|.+.+..+    .+..-+.+-.++.....     ..++||||++|..+..+....  ...++...+...+  +-..+
T Consensus        80 -~~E~~il~~l----~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL  154 (394)
T 4e7w_A           80 -NRELQIMRIV----KHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSL  154 (394)
T ss_dssp             -CHHHHHHHTC----CCTTBCCEEEEEEEESSSSSCEEEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHhC----CCCCcceEEEEEEecCCCCCceEEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence             0233333222    22222223233322111     157999999986554433221  2234443333322  23447


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHH
Q 004254          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTT  526 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~  526 (765)
                      ..+|..|++|+|+||+||+++. .++.++|+|||++..+.......       -..++..++++++..- ...+...|++
T Consensus       155 ~~LH~~~ivHrDlkp~Nill~~-~~~~~kL~DFG~a~~~~~~~~~~-------~~~~t~~y~aPE~~~~~~~~~~~~Diw  226 (394)
T 4e7w_A          155 AYIHSIGICHRDIKPQNLLLDP-PSGVLKLIDFGSAKILIAGEPNV-------SYICSRYYRAPELIFGATNYTTNIDIW  226 (394)
T ss_dssp             HHHHHTTEECSCCSGGGEEEET-TTTEEEECCCTTCEECCTTCCCC-------SSCSCGGGCCHHHHTTCSSCCTHHHHH
T ss_pred             HHHHHCCccCCCCCHHHEEEcC-CCCcEEEeeCCCcccccCCCCCc-------ccccCcCccCHHHHcCCCCCCcHHHHH
Confidence            8899999999999999999983 37899999999998775432110       1234666788887743 3356677999


Q ss_pred             HHHHHHHHHH
Q 004254          527 AVRRTAQFFL  536 (765)
Q Consensus       527 ~l~~~~~~~l  536 (765)
                      ++...+.+++
T Consensus       227 SlG~il~ell  236 (394)
T 4e7w_A          227 STGCVMAELM  236 (394)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988776655

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.33  E-value=1e-13  Score=145.97  Aligned_cols=188  Identities=14%  Similarity=0.130  Sum_probs=109.6

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +.||.|++|.||+|+..+ .||||+.+......                    .      ...              .+.
T Consensus        39 ~~lg~G~~g~V~~~~~~~-~~avk~~~~~~~~~--------------------~------~~~--------------~~~   77 (319)
T 2y4i_B           39 ELIGKGRFGQVYHGRWHG-EVAIRLIDIERDNE--------------------D------QLK--------------AFK   77 (319)
T ss_dssp             CBCCCSSSSEEEEEEESS-SEEEEECCCCSCCC--------------------C------CCC--------------CCC
T ss_pred             eEeccCCceEEEEEEEcC-eEEEEEeecCCCCH--------------------H------HHH--------------HHH
Confidence            789999999999999865 49999886432111                    0      000              011


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCCcc
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHGFF  456 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~Gff  456 (765)
                      +|+..+.+    +. +++|.-..-+.......+++|||++|++|.++.......++...+...+.  -..+..+|..|++
T Consensus        78 ~e~~~l~~----l~-h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~  152 (319)
T 2y4i_B           78 REVMAYRQ----TR-HENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGIL  152 (319)
T ss_dssp             TTGGGGTT----CC-CTTBCCCCEEEECSSCEEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhc----CC-CCCEeEEEEEEecCCceEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            22222222    22 23332222222334567999999999999987643333355444444333  3447889999999


Q ss_pred             ccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc---------CCCCCCCCHHH
Q 004254          457 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM---------GVLVPTGDTTA  527 (765)
Q Consensus       457 HaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l---------G~~~~~~D~~~  527 (765)
                      |+|+||.||+++   ++.++|+|||++........... ........++..++++++...         +..++..|+++
T Consensus       153 H~dlkp~NIl~~---~~~~~l~Dfg~~~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~s  228 (319)
T 2y4i_B          153 HKDLKSKNVFYD---NGKVVITDFGLFSISGVLQAGRR-EDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFA  228 (319)
T ss_dssp             CCCCCSTTEEEC-----CCEECCCSCCC-----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHH
T ss_pred             ccCCChhhEEEe---CCCEEEeecCCcccccccccccc-ccccccCCCcccccChHHhhhccccccccccCCCchhhHHH
Confidence            999999999996   57999999999776532211100 000011124456777777753         22345568888


Q ss_pred             HHHHHHHHH
Q 004254          528 VRRTAQFFL  536 (765)
Q Consensus       528 l~~~~~~~l  536 (765)
                      +...+.+++
T Consensus       229 lG~il~el~  237 (319)
T 2y4i_B          229 LGTIWYELH  237 (319)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887665554

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.30  E-value=6.6e-13  Score=147.08  Aligned_cols=115  Identities=10%  Similarity=0.051  Sum_probs=73.6

Q ss_pred             CeEEEEeecCCCChhhhhh-hhh-----cCCCHHHHHHH--HHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEee
Q 004254          409 PQILTMEYVPGIKINRIQS-LDE-----LGVDRKRLGRY--AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDF  480 (765)
Q Consensus       409 ~~vLVMEyieG~~L~d~~~-l~~-----~g~d~~~ia~~--li~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDF  480 (765)
                      ..+++|++. +++|.++.. +..     ..++.......  .+-..+..+|..|++|+|+||.|||++.  ++.++|+||
T Consensus       179 ~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHrDiKp~NILl~~--~~~~kL~DF  255 (413)
T 3dzo_A          179 SRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQ--RGGVFLTGF  255 (413)
T ss_dssp             SEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECT--TCCEEECCG
T ss_pred             ceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcccceEEEec--CCeEEEEec
Confidence            346777765 456776542 111     00111111111  2334478899999999999999999986  889999999


Q ss_pred             cceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc----------CCCCCCCCHHHHHHHHHHHH
Q 004254          481 GMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM----------GVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       481 Glv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l----------G~~~~~~D~~~l~~~~~~~l  536 (765)
                      |++...+...         ....+ +.++++++...          ...++..|++++...+.+++
T Consensus       256 G~a~~~~~~~---------~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~ell  311 (413)
T 3dzo_A          256 EHLVRDGASA---------VSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIW  311 (413)
T ss_dssp             GGCEETTEEE---------CCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHH
T ss_pred             cceeecCCcc---------ccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHH
Confidence            9988776541         11233 66777777732          22344678999887766654

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.22  E-value=8.1e-11  Score=119.53  Aligned_cols=144  Identities=19%  Similarity=0.177  Sum_probs=93.0

Q ss_pred             CChhhhhcccCccccc-ccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHH
Q 004254          287 APLDDVFERFDVEPIA-AASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIY  364 (765)
Q Consensus       287 ~~~eeiF~~fd~~PIg-saSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~  364 (765)
                      ..+.+.+..++.+|++ .|+.++||+... +|+.++||+.++....                                  
T Consensus        13 ~~l~~~~~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~~~~----------------------------------   58 (264)
T 1nd4_A           13 AAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALN----------------------------------   58 (264)
T ss_dssp             GGGTTTTTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSCTTS----------------------------------
T ss_pred             HHHHHhcCCCceEecccCCCCceEEEEecCCCCeEEEEeCCcccch----------------------------------
Confidence            3445556666667887 667799999988 6889999997553110                                  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccC--CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH
Q 004254          365 DECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT--TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA  442 (765)
Q Consensus       365 ~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s--t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l  442 (765)
                                 ++..|++.+..+++.     .+.+|+++....  +..+++|||++|.++. +..     .+...++..+
T Consensus        59 -----------~~~~E~~~l~~l~~~-----~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~-~~~-----~~~~~~~~~l  116 (264)
T 1nd4_A           59 -----------ELQDEAARLSWLATT-----GVPCAAVLDVVTEAGRDWLLLGEVPGQDLL-SSH-----LAPAEKVSIM  116 (264)
T ss_dssp             -----------CHHHHHHHHHHHHTT-----TCCBCCEEEEEECSSCEEEEEECCSSEETT-TSC-----CCHHHHHHHH
T ss_pred             -----------hhhHHHHHHHHHHhC-----CCCCCeEEEeccCCCCCEEEEEecCCcccC-cCc-----CCHhHHHHHH
Confidence                       345666777666542     477888876433  3469999999999885 210     1122222211


Q ss_pred             HHHHHHHHHh----------------------------------------------------------CCccccCCCCCc
Q 004254          443 VESYLEQILS----------------------------------------------------------HGFFHADPHPGN  464 (765)
Q Consensus       443 i~~~L~qi~~----------------------------------------------------------~GffHaDpHPGN  464 (765)
                      . .++.++|.                                                          .+++|+|+||+|
T Consensus       117 ~-~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~N  195 (264)
T 1nd4_A          117 A-DAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPN  195 (264)
T ss_dssp             H-HHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGG
T ss_pred             H-HHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCc
Confidence            1 11222221                                                          239999999999


Q ss_pred             EEEeecCCCcEEEEeecceeccChh
Q 004254          465 IAVDDVNGGRLIFYDFGMMGSISPN  489 (765)
Q Consensus       465 ILV~~~~~g~l~LiDFGlv~~L~~~  489 (765)
                      |++++  ++.+.++|||.++.-++.
T Consensus       196 il~~~--~~~~~liD~~~a~~g~~~  218 (264)
T 1nd4_A          196 IMVEN--GRFSGFIDCGRLGVADRY  218 (264)
T ss_dssp             EEEET--TEEEEECCCTTCEEEETH
T ss_pred             EEEEC--CcEEEEEcchhcccCChH
Confidence            99973  333459999999877654

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.13  E-value=3.1e-10  Score=116.64  Aligned_cols=136  Identities=18%  Similarity=0.132  Sum_probs=91.9

Q ss_pred             cccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQ  379 (765)
Q Consensus       300 PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~  379 (765)
                      ..+.+|.++||++...|+.+++|+.+++....                                          .-++.+
T Consensus        21 ~~~g~s~~~v~~~~~~~~~~vlK~~~~~~~~~------------------------------------------~~~~~~   58 (263)
T 3tm0_A           21 DTEGMSPAKVYKLVGENENLYLKMTDSRYKGT------------------------------------------TYDVER   58 (263)
T ss_dssp             CCSCCSSSEEEEEECSSCEEEEEEECGGGTTS------------------------------------------TTCHHH
T ss_pred             eccCCCCCeEEEEECCCCcEEEEeCCcccCCC------------------------------------------HHHHHH
Confidence            46778889999999888999999986532111                                          013567


Q ss_pred             HHHHHHHHHHhcCCCCccccceeeecc--CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHh-----
Q 004254          380 EAANAELFASNFKDMDYVKVPTIFWEY--TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS-----  452 (765)
Q Consensus       380 EA~Nl~rf~~~f~~~~~V~vP~vy~e~--st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~-----  452 (765)
                      |++.++.+.+      .+.+|+++...  .+..+++|||++|.++.+...   ...+...++..+. ..+..+|.     
T Consensus        59 E~~~l~~l~~------~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~~~---~~~~~~~~~~~l~-~~l~~LH~~~~~~  128 (263)
T 3tm0_A           59 EKDMMLWLEG------KLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYE---DEQSPEKIIELYA-ECIRLFHSIDISD  128 (263)
T ss_dssp             HHHHHHHHTT------TSCCCCEEEEEEETTEEEEEEECCSSEEHHHHCC---TTTCHHHHHHHHH-HHHHHHHHSCCTT
T ss_pred             HHHHHHHHhc------CCCCCeEEEEEecCCceEEEEEecCCeehhhccC---CcccHHHHHHHHH-HHHHHHhCCCccc
Confidence            7777777643      36788888533  345689999999999876410   1122333333322 23344444     


Q ss_pred             ------------------------------------------------------CCccccCCCCCcEEEeecCCCcEEEE
Q 004254          453 ------------------------------------------------------HGFFHADPHPGNIAVDDVNGGRLIFY  478 (765)
Q Consensus       453 ------------------------------------------------------~GffHaDpHPGNILV~~~~~g~l~Li  478 (765)
                                                                            .+++|+|+||+||++++  ++.+.+|
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~--~~~~~lI  206 (263)
T 3tm0_A          129 CPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKD--GKVSGFI  206 (263)
T ss_dssp             CSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEET--TEEEEEC
T ss_pred             CCCcchHHHHHHHHHHHHhccccccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEEC--CcEEEEE
Confidence                                                                  45899999999999973  3345699


Q ss_pred             eecceeccChh
Q 004254          479 DFGMMGSISPN  489 (765)
Q Consensus       479 DFGlv~~L~~~  489 (765)
                      ||+.++.-++.
T Consensus       207 Dwe~a~~gd~~  217 (263)
T 3tm0_A          207 DLGRSGRADKW  217 (263)
T ss_dssp             CCTTCEEEEHH
T ss_pred             EchhcccCCHH
Confidence            99999876653

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.95  E-value=3e-09  Score=114.91  Aligned_cols=163  Identities=14%  Similarity=0.151  Sum_probs=102.1

Q ss_pred             CCCChHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEeCCeEEEEEEec--CCchhhHHHHHHHHHHHHHHHh
Q 004254          270 PPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQR--PGLKDLFDIDLKNLRVIAEYLQ  347 (765)
Q Consensus       270 pp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqr--P~i~~~i~~DL~il~~la~~l~  347 (765)
                      ++++.+.+.+.+.+.++.. .   ...+.++++.|..+.||+.+..+..+++|+.+  |+....                
T Consensus        19 ~~ld~~~l~~~l~~~~~~~-~---~~~~~~~l~~G~sn~~y~v~~~~~~~vlr~~~~p~~~~~~----------------   78 (359)
T 3dxp_A           19 QRFDTEALEAWMRQHVEGF-A---GPLSVEQFKGGQSNPTFKLVTPGQTYVMRAKPGPKSKLLP----------------   78 (359)
T ss_dssp             -CCCHHHHHHHHHHHSTTC-C---CCCEEEECCC-CCSCEEEEECSSCEEEEECCCC-----------------------
T ss_pred             cCCCHHHHHHHHHHhCCCC-C---CCceEEEcCCcccceEEEEEECCceEEEEeCCCCCCCCCC----------------
Confidence            4567777888888776421 1   12345789999999999999877899999876  542100                


Q ss_pred             hcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCC-----eEEEEeecCCCCh
Q 004254          348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTP-----QILTMEYVPGIKI  422 (765)
Q Consensus       348 ~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~-----~vLVMEyieG~~L  422 (765)
                                               ..-++.+|++.+..+.+     ..+.+|+++......     .+++|||++|..+
T Consensus        79 -------------------------~~~~~~~E~~~l~~L~~-----~~vpvP~~~~~~~~~~~~g~~~~vme~v~G~~l  128 (359)
T 3dxp_A           79 -------------------------SAHAIEREYRVMDALAG-----TDVPVAKMYALCEDESVIGRAFYIMEFVSGRVL  128 (359)
T ss_dssp             ----------------------------CHHHHHHHHHHHTT-----SSSCCCCEEEEECCTTTTSSCEEEEECCCCBCC
T ss_pred             -------------------------cHHHHHHHHHHHHHhhc-----CCCCCCcEEEECCCCCccCCeEEEEEecCCeec
Confidence                                     01245567777766654     357899998754433     7899999999988


Q ss_pred             hhhhhhhhcCCCH---HHHHHHHHHHHHHHHH------------------------------------------------
Q 004254          423 NRIQSLDELGVDR---KRLGRYAVESYLEQIL------------------------------------------------  451 (765)
Q Consensus       423 ~d~~~l~~~g~d~---~~ia~~li~~~L~qi~------------------------------------------------  451 (765)
                      .+.. ..  ..+.   ..+...+. ..+..+|                                                
T Consensus       129 ~~~~-~~--~l~~~~~~~~~~~l~-~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  204 (359)
T 3dxp_A          129 WDQS-LP--GMSPAERTAIYDEMN-RVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSLMDWL  204 (359)
T ss_dssp             CCTT-CT--TCCHHHHHHHHHHHH-HHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHG
T ss_pred             CCCc-cc--cCCHHHHHHHHHHHH-HHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHHHHHH
Confidence            5411 00  1111   11111111 1122222                                                


Q ss_pred             ----------hCCccccCCCCCcEEEeecCCC-c-EEEEeecceeccCh
Q 004254          452 ----------SHGFFHADPHPGNIAVDDVNGG-R-LIFYDFGMMGSISP  488 (765)
Q Consensus       452 ----------~~GffHaDpHPGNILV~~~~~g-~-l~LiDFGlv~~L~~  488 (765)
                                ..+++|+|+||+||++++  ++ + +.++||++++.-++
T Consensus       205 ~~~~~~~~~~~~~lvHgD~~~~Nil~~~--~~~~v~~viDwe~a~~g~p  251 (359)
T 3dxp_A          205 PQHIPQEDADLTSIVHGDYRLDNLMFHP--TEPRVLAVLDWELSTLGHP  251 (359)
T ss_dssp             GGCCCSTTSSCCEEECSSCSGGGEEECS--SSSCEEEECCCTTCEEECH
T ss_pred             HhcCCCccCCCceEEeCCCCCCcEEEeC--CCCcEEEEECccccccCCH
Confidence                      157999999999999985  33 3 68999999987665

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.88  E-value=1e-08  Score=105.59  Aligned_cols=68  Identities=18%  Similarity=0.144  Sum_probs=42.3

Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~  527 (765)
                      .++|+|+||+||++++  ++.+.||||+.++.-++..  .++-++......+.+.....+...|..  ..|...
T Consensus       194 ~l~HGDl~~~Nil~~~--~~~~~viDwe~a~~gdp~~--Dla~~~~~~~~~~~~~~~~fl~~Yg~~--~~d~~r  261 (272)
T 4gkh_A          194 VVTHGDFSLDNLIFDE--GKLIGCIDVGRVGIADRYQ--DLAILWNCLGEFSPSLQKRLFQKYGID--NPDMNK  261 (272)
T ss_dssp             EEECSCCCTTSEEEET--TEEEEECCCTTCEEEETHH--HHHHHHHHHTTTCHHHHHHHHHHHTCS--SCCHHH
T ss_pred             EEEcCCCCCCeEEEEC--CeEEEEEECcccccCCHHH--HHHHHHHHhhhcCHHHHHHHHHHcCCC--CCCHHH
Confidence            3899999999999974  5556799999999776643  233333323334444444444445643  335543

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=98.68  E-value=4.6e-07  Score=99.18  Aligned_cols=110  Identities=17%  Similarity=0.157  Sum_probs=63.6

Q ss_pred             CCCChHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHh
Q 004254          270 PPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ  347 (765)
Q Consensus       270 pp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~  347 (765)
                      -+++.+.+.+.+. .+|.-...  ..++.+++|.|..++||+++.  .|+.|+||...|..+-. ..+            
T Consensus        10 ~~l~~~~v~~~l~-~~~~~~~~--~~~~~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~-~~~------------   73 (397)
T 2olc_A           10 ETLNESSAVALAV-KLGLFPSK--STLTCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVV-GES------------   73 (397)
T ss_dssp             CCCCHHHHHHHHH-HTTC-------CCEEEECCSSSSEEEEEEEC----CEEEEEEECCC--------------------
T ss_pred             ccCCHHHHHHHHH-hcCcCCCC--CceEEEECCCCceEEEEEEEECCCCcEEEEEecchhhccc-CCC------------
Confidence            3456666666665 44421100  124567999999999999976  47899999987754200 000            


Q ss_pred             hcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCC
Q 004254          348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIK  421 (765)
Q Consensus       348 ~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~  421 (765)
                        .+      ....              .+..|++.+..+.+.    ....+|++|.......+++|||++|..
T Consensus        74 --~~------~~~~--------------r~~~E~~~L~~l~~~----~~~~vP~~~~~d~~~~~lvmE~l~g~~  121 (397)
T 2olc_A           74 --WP------LTID--------------RARIESSALIRQGEH----VPHLVPRVFYSDTEMAVTVMEDLSHLK  121 (397)
T ss_dssp             --CC------CCTT--------------HHHHHHHHHHHHHTT----CGGGSCCEEEEETTTTEEEECCCTTSE
T ss_pred             --Cc------CcHH--------------HHHHHHHHHHHhhhh----CCCCcCeEEEEcCCccEEEEEeCCCcc
Confidence              00      0000              123455555555432    235789998755556799999999853

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.64  E-value=1.1e-07  Score=100.44  Aligned_cols=98  Identities=6%  Similarity=0.072  Sum_probs=65.1

Q ss_pred             CCChHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcC
Q 004254          271 PFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKID  350 (765)
Q Consensus       271 p~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~  350 (765)
                      .++.+.+++.|.+.+.. +    .....++++.|....||+..   ..+++|+.+++.                      
T Consensus         3 ~~~~~~l~~~l~~~~p~-~----~~~~i~~~~~G~~n~v~~v~---~~~vlR~~~~~~----------------------   52 (304)
T 3sg8_A            3 TYTFDQVEKAIEQLYPD-F----TINTIEISGEGNDCIAYEIN---RDFIFKFPKHSR----------------------   52 (304)
T ss_dssp             CCCHHHHHHHHHHHCTT-C----CCCCCCEEEECSSEEEEEST---TSEEEEEESSHH----------------------
T ss_pred             cCCHHHHHHHHHHhCCC-c----cceeeEecCCCCcceEEEEC---CEEEEEecCCcc----------------------
Confidence            45667788888877642 1    12234679999999999874   679999864420                      


Q ss_pred             CCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCC-----CeEEEEeecCCCChhh
Q 004254          351 PKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTT-----PQILTMEYVPGIKINR  424 (765)
Q Consensus       351 p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st-----~~vLVMEyieG~~L~d  424 (765)
                                            ..-++.+|++.+..+.+    ...+.+|+++.....     ..++||||++|.++.+
T Consensus        53 ----------------------~~~~~~~E~~~l~~l~~----~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G~~l~~  105 (304)
T 3sg8_A           53 ----------------------GSTNLFNEVNILKRIHN----KLPLPIPEVVFTGMPSETYQMSFAGFTKIKGVPLTP  105 (304)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHTT----SSSSCCCCEEEECCCCSSCSCSCEEEECCCCEECCH
T ss_pred             ----------------------hHHHHHHHHHHHHHHHh----cCCCCCCceEeecCCCCCCCcceEEEcccCCeECCc
Confidence                                  01134566666666543    345788998865332     3488999999998875

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=98.51  E-value=3.3e-07  Score=95.95  Aligned_cols=96  Identities=19%  Similarity=0.127  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCC
Q 004254          275 ETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKS  353 (765)
Q Consensus       275 ~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~  353 (765)
                      +.+.+.+.+.+|.++..+      +++|.|..++||+.++ +|++|+||+..++....                      
T Consensus         3 ~~v~a~~~~l~G~~v~~v------~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~----------------------   54 (288)
T 3f7w_A            3 NSVAARVTELTGREVAAV------AERGHSHRWHLYRVELADGTPLFVKALPDDAPAL----------------------   54 (288)
T ss_dssp             HHHHHHHHHHHCCCEEEE------EEEEEETTEEEEEEEETTSCEEEEEECCTTCCCC----------------------
T ss_pred             HHHHHHHHHhcCCCeEEE------EecCCCCCeEEEEEEECCCCEEEEEEeCCCCcch----------------------
Confidence            456778888889776543      7899999999999999 89999999875543211                      


Q ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhh
Q 004254          354 DGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINR  424 (765)
Q Consensus       354 ~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d  424 (765)
                             .             -.|..|++.++.+++    ...|.+|+++..  +..+++|||+++.....
T Consensus        55 -------~-------------~~~~~Ea~~L~~L~~----~~~vpvP~v~~~--~~~~lv~e~l~~~~~~~   99 (288)
T 3f7w_A           55 -------D-------------GLFRAEALGLDWLGR----SFGSPVPQVAGW--DDRTLAMEWVDERPPTP   99 (288)
T ss_dssp             -------T-------------THHHHHHHHHHHHTC----STTCCSCCEEEE--ETTEEEEECCCCCCCCH
T ss_pred             -------h-------------hHHHHHHHHHHHHHh----hCCCCcceEEec--cCceEEEEeecccCCCh
Confidence                   0             024567777776643    245889999964  56799999999876543

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=98.42  E-value=1.9e-06  Score=91.02  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=30.1

Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (765)
                      ..+++|+|+||+||+++.  ++.+.+|||+.++.-++
T Consensus       221 ~~~l~HgD~~~~Nil~~~--~~~~~lIDfe~a~~g~~  255 (346)
T 2q83_A          221 SPNLCHQDYGTGNTLLGE--NEQIWVIDLDTVSFDLP  255 (346)
T ss_dssp             SCCEECSSCSTTSEEECG--GGCEEECCCTTCEECCT
T ss_pred             cCceecCCCCcccEEEeC--CCcEEEEehhhcccCCh
Confidence            468999999999999975  67899999999886655

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=98.42  E-value=7.2e-07  Score=95.84  Aligned_cols=84  Identities=15%  Similarity=0.204  Sum_probs=56.8

Q ss_pred             cccc-cccceeEEEEEEeC--------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004254          298 VEPI-AAASLGQVHRARLK--------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (765)
Q Consensus       298 ~~PI-gsaSiGQVhrA~l~--------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (765)
                      .+++ +.|....+|+....        |+.+++|+..|+....                 ...                 
T Consensus        25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~-----------------~~~-----------------   70 (357)
T 3ats_A           25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVP-----------------VFP-----------------   70 (357)
T ss_dssp             EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCC-----------------SSS-----------------
T ss_pred             EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccc-----------------cCc-----------------
Confidence            3678 89999999998875        7899999876543100                 000                 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccC-----CCeEEEEeecCCCChhh
Q 004254          369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT-----TPQILTMEYVPGIKINR  424 (765)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s-----t~~vLVMEyieG~~L~d  424 (765)
                           .-++..|++.+..+++.    ..+.+|+++....     +..+++|||++|.++.+
T Consensus        71 -----~~~~~~E~~~l~~L~~~----~~vpvP~v~~~~~~~~~~g~~~~v~e~l~G~~l~~  122 (357)
T 3ats_A           71 -----TYRLDHQFEVIRLVGEL----TDVPVPRVRWIETTGDVLGTPFFLMDYVEGVVPPD  122 (357)
T ss_dssp             -----CCCHHHHHHHHHHHHHH----CCSCCCCEEEEECSSTTTSSCEEEEECCCCBCCCB
T ss_pred             -----hhHHHHHHHHHHHHhhc----CCCCCCcEEEEccCCCccCCceEEEEecCCCChhh
Confidence                 01345667777777654    2478999986433     23589999999987653

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.39  E-value=6.3e-07  Score=95.19  Aligned_cols=93  Identities=10%  Similarity=0.086  Sum_probs=60.0

Q ss_pred             HHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCC
Q 004254          276 TAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDG  355 (765)
Q Consensus       276 ~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~  355 (765)
                      .+.+.+++.+..     +...+.++++.|...+||+.   |..++||+.++.  ..                        
T Consensus         7 ~l~~~l~~~~p~-----~~~~~v~~l~~G~~n~v~~v---g~~~VlR~~~~~--~~------------------------   52 (306)
T 3tdw_A            7 HYTTMIMTQFPD-----ISIQSVESLGEGFRNYAILV---NGDWVFRFPKSQ--QG------------------------   52 (306)
T ss_dssp             HHHHHHHHHCTT-----SCCSCEEEEEECSSEEEEEE---TTTEEEEEESSH--HH------------------------
T ss_pred             HHHHHHHHHCCC-----CCceeeeecCCCcceeEEEE---CCEEEEEecCCc--hH------------------------
Confidence            445555555531     11123367889999999988   788999985221  00                        


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeecc---CCCeEEEEeecCCCChhh
Q 004254          356 AKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY---TTPQILTMEYVPGIKINR  424 (765)
Q Consensus       356 ~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~---st~~vLVMEyieG~~L~d  424 (765)
                                        .-++..|++.+..+++.    ..+.||+++...   .+..+++|||++|.++.+
T Consensus        53 ------------------~~~~~~E~~~L~~L~~~----~~v~VP~~~~~~~~~~g~~~~v~e~i~G~~l~~  102 (306)
T 3tdw_A           53 ------------------ADELNKEIQLLPLLVGC----VKVNIPQYVYIGKRSDGNPFVGYRKVQGQILGE  102 (306)
T ss_dssp             ------------------HHHHHHHHHHHHHHTTT----CSSBCCCEEEEEECTTSCEEEEEECCCSEECHH
T ss_pred             ------------------HHHHHHHHHHHHHHHhc----CCCCCCCeEeecccCCCceEEEEeccCCeECch
Confidence                              11456677777776542    247788887532   345799999999998875

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=98.39  E-value=1.2e-06  Score=94.10  Aligned_cols=98  Identities=16%  Similarity=0.196  Sum_probs=71.1

Q ss_pred             ChHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCC
Q 004254          273 PSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPK  352 (765)
Q Consensus       273 p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~  352 (765)
                      .++.+.+.+.+.+|.+.    .-.+.+|++.|.+.++|+.+.++..++||+..++-.                       
T Consensus        20 ~~~~l~~~L~~~lg~~~----~i~~~~~l~gG~~n~~y~v~~~~~~~vlK~~~~~~~-----------------------   72 (312)
T 3jr1_A           20 MWKSISQVLAEQFGAYY----FIKHKEKLYSGEMNEIWLINDEVQTVFVKINERSYR-----------------------   72 (312)
T ss_dssp             HHHHHHHHHHHHHSSCC----CCCEEEEECCSSSSEEEEEESSSCEEEEEEEEGGGH-----------------------
T ss_pred             cHHHHHHHHHHHhCCCc----ceeeeEEeCCccceeeeEEEECCCeEEEEeCCcccH-----------------------
Confidence            45677788888888541    122457999999999999998888999998754311                       


Q ss_pred             CCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeec--cCCCeEEEEeecCCCChh
Q 004254          353 SDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWE--YTTPQILTMEYVPGIKIN  423 (765)
Q Consensus       353 ~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e--~st~~vLVMEyieG~~L~  423 (765)
                                            -.|..|++.++.+++.    ..+.||+++..  ..+..+++|||++|.+++
T Consensus        73 ----------------------~~~~~E~~~L~~L~~~----~~v~VP~vl~~~~~~g~~~lvme~l~G~~~~  119 (312)
T 3jr1_A           73 ----------------------SMFRAEADQLALLAKT----NSINVPLVYGIGNSQGHSFLLLEALNKSKNK  119 (312)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHT----TSSBCCCEEEEEECSSEEEEEEECCCCCCCC
T ss_pred             ----------------------HHHHHHHHHHHHHHhh----CCCCcceEEEEeecCCceEEEEEeccCCCCC
Confidence                                  1345677777777652    24789999853  335679999999998764

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=98.32  E-value=2.5e-06  Score=90.09  Aligned_cols=162  Identities=9%  Similarity=0.084  Sum_probs=91.4

Q ss_pred             CCCChHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhc
Q 004254          270 PPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKI  349 (765)
Q Consensus       270 pp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~  349 (765)
                      ++++.+++.+++++ +|.  .++   .+.+|++.|....||+...++..+++|+.+++....                  
T Consensus         5 ~~~~~~~l~~~l~~-~~~--~~~---~~~~~i~~G~~n~~~~v~~~~g~~vlk~~~~~~~~~------------------   60 (322)
T 2ppq_A            5 TDITEDELRNFLTQ-YDV--GSL---TSYKGIAEGVENSNFLLHTTKDPLILTLYEKRVEKN------------------   60 (322)
T ss_dssp             CCCCHHHHHHHHTT-BCC--CCE---EEEEEECC---EEEEEEEESSCCEEEEEECC---CC------------------
T ss_pred             ccCCHHHHHHHHHh-CCC--Ccc---eEeeccCCCcccceEEEEeCCccEEEEEeCCCCCHH------------------
Confidence            56677777777764 553  111   234789999999999998855579999886631100                  


Q ss_pred             CCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeecc--------CCCeEEEEeecCCCC
Q 004254          350 DPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY--------TTPQILTMEYVPGIK  421 (765)
Q Consensus       350 ~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~--------st~~vLVMEyieG~~  421 (765)
                                                ++..|...+..+++.     ++.+|+++...        .+..+++|||++|.+
T Consensus        61 --------------------------~l~~e~~~l~~L~~~-----g~~vP~~~~~~~g~~~~~~~g~~~~l~~~l~G~~  109 (322)
T 2ppq_A           61 --------------------------DLPFFLGLMQHLAAK-----GLSCPLPLPRKDGELLGELSGRPAALISFLEGMW  109 (322)
T ss_dssp             --------------------------HHHHHHHHHHHHHHT-----TCCCCCBCCBTTCCSCEEETTEEEEEEECCCCBC
T ss_pred             --------------------------HHHHHHHHHHHHHHC-----CCCCCcccCCCCCCEEEEECCEEEEEEEeCCCcC
Confidence                                      122344444555442     36688887532        245689999999987


Q ss_pred             hhhh-----h-------hhhhc--C--C------CHHHHHH-----------------HHHHHHHHHHH-------hCCc
Q 004254          422 INRI-----Q-------SLDEL--G--V------DRKRLGR-----------------YAVESYLEQIL-------SHGF  455 (765)
Q Consensus       422 L~d~-----~-------~l~~~--g--~------d~~~ia~-----------------~li~~~L~qi~-------~~Gf  455 (765)
                      +...     .       .+...  +  .      .......                 ..+...+..+.       ..++
T Consensus       110 ~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~l  189 (322)
T 2ppq_A          110 LRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWPKDLPAGV  189 (322)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHHHHHCCCSSCEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCcccCCccc
Confidence            5421     0       01100  0  0      0000000                 00111222221       3579


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccCh
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISP  488 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~  488 (765)
                      +|+|+||+||++++  ++.+.+|||+.++.-++
T Consensus       190 iHgDl~~~Nil~~~--~~~~~lIDf~~a~~g~~  220 (322)
T 2ppq_A          190 IHADLFQDNVFFLG--DELSGLIDFYFACNDLL  220 (322)
T ss_dssp             ECSCCCGGGEEEET--TEEEEECCCTTCEEEEH
T ss_pred             CCCCCCccCEEEeC--CceEEEecchhccCchh
Confidence            99999999999974  43447999998886443

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=98.17  E-value=9.5e-06  Score=87.47  Aligned_cols=53  Identities=9%  Similarity=0.100  Sum_probs=41.3

Q ss_pred             CCCChHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEe-CCeEEEEEEecCC
Q 004254          270 PPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPG  327 (765)
Q Consensus       270 pp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~  327 (765)
                      |+++.+++.+.+.+.+|....    .+...|.|.|+...||+... +| .+++|+.++.
T Consensus         4 p~l~~~~l~~~l~~~ygl~~~----~~~~l~~G~g~~N~vy~v~~~~g-~~vLK~~~~~   57 (339)
T 3i1a_A            4 QPIQAQQLIELLKVHYGIDIH----TAQFIQGGADTNAFAYQADSESK-SYFIKLKYGY   57 (339)
T ss_dssp             CSSCTTHHHHHHHHHHCCCCS----EEEEETTTSCSSCEEEEEECSSC-EEEEEEEECS
T ss_pred             CCCCHHHHHHHHHHHcCCCcc----eeEEeeccCccccceEEEEeCCC-CEEEEEecCc
Confidence            678888899999999987543    23445667777999999998 56 9999988664

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=98.15  E-value=7.7e-06  Score=90.47  Aligned_cols=35  Identities=17%  Similarity=0.181  Sum_probs=30.0

Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (765)
                      ..+++|+|+||+||++++  ++ +++|||+.+..-++.
T Consensus       231 ~~~liHGDl~~~Nil~~~--~~-~~lID~e~a~~G~p~  265 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQ--DS-TQVIDPEFSFYGPMG  265 (420)
T ss_dssp             CCEEECSCCSGGGEEECS--SC-EEECCCTTCEEECHH
T ss_pred             CCeEEecCCCCCcEEEeC--CC-CEEEeCcccccCchH
Confidence            567999999999999974  44 999999999987764

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=98.08  E-value=2.7e-05  Score=82.42  Aligned_cols=52  Identities=21%  Similarity=0.302  Sum_probs=37.6

Q ss_pred             CCCCChHHHHHHHHHHhCCChhhhhcccCcccccccceeEEEEEEe-CCeEEEEEEecCC
Q 004254          269 VPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKVQRPG  327 (765)
Q Consensus       269 vpp~p~~~v~~iie~elG~~~eeiF~~fd~~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~  327 (765)
                      .+.++.+.+...+ +.+|.....     ..+|++ |....||+... +|+.+++|+.+|+
T Consensus         8 ~~~l~~~~i~~~l-~~~g~~~~~-----~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~   60 (328)
T 1zyl_A            8 FQTLHPDTIMDAL-FEHGIRVDS-----GLTPLN-SYENRVYQFQDEDRRRFVVKFYRPE   60 (328)
T ss_dssp             CCCCCHHHHHHHH-HHTTCCCCS-----CCEEEC-CSSSEEEEECCTTCCCEEEEEECTT
T ss_pred             CCCCCHHHHHHHH-HHcCCCCCc-----eEEeec-CcccceEEEEcCCCCEEEEEEcCCC
Confidence            4556777888888 466654321     235777 88899999887 6888999998775

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=98.01  E-value=1.2e-05  Score=84.67  Aligned_cols=136  Identities=17%  Similarity=0.214  Sum_probs=84.0

Q ss_pred             cccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          298 VEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       298 ~~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      -+|++.|...++|+.    +.+++|+..++....                                           +|.
T Consensus        23 i~~l~gG~tN~~~~~----~~~vlR~~~~~~~~~-------------------------------------------~~r   55 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA----GDLCLRIPGKGTEEY-------------------------------------------INR   55 (301)
T ss_dssp             CEEEESCSSEEEEEE----TTEEEEEECC----C-------------------------------------------CCH
T ss_pred             eeEcCCcccccccee----eeEEEECCCCCccce-------------------------------------------eCH
Confidence            578999999999999    679999886653211                                           133


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeec-CCCChhhhh----------------hhhhcCC------C
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYV-PGIKINRIQ----------------SLDELGV------D  434 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyi-eG~~L~d~~----------------~l~~~g~------d  434 (765)
                      .+|++++..+.+.     ++. |+++.......+++|||+ +|.++....                .+...+.      +
T Consensus        56 ~~E~~~l~~l~~~-----g~~-P~~~~~~~~~~~~v~e~i~~g~~l~~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~  129 (301)
T 3dxq_A           56 ANEAVAAREAAKA-----GVS-PEVLHVDPATGVMVTRYIAGAQTMSPEKFKTRPGSPARAGEAFRKLHGSGAVFPFRFE  129 (301)
T ss_dssp             HHHHHHHHHHHHT-----TSS-CCEEEECTTTCCEEEECCTTCEECCHHHHHHSTTHHHHHHHHHHHHHTSCCCCSSBCC
T ss_pred             HHHHHHHHHHHHc-----CCC-CceEEEECCCCEEEEeecCCCccCCHhhHhhhHHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence            4577777777652     344 888876666689999999 887775310                0111111      1


Q ss_pred             HH-HHHH--------------------HHHHHHHHHHH----hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004254          435 RK-RLGR--------------------YAVESYLEQIL----SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (765)
Q Consensus       435 ~~-~ia~--------------------~li~~~L~qi~----~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (765)
                      .. .+..                    ..+..+...+.    ...++|+|+||+||+..   ++++.+|||..++.-++.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~HgDl~~~Nil~~---~~~~~lID~e~a~~g~~~  206 (301)
T 3dxq_A          130 LFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGVRSALAAHPLPLAACHCDPLCENFLDT---GERMWIVDWEYSGMNDPL  206 (301)
T ss_dssp             HHHHHHHHHHHHC--CCCCCTTHHHHHHHHHHHHHHHHSSCCCCEEECSCCCGGGEEEC---SSCEEECCCTTCEEECTH
T ss_pred             HHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhcCCCceeeccCCCcCCEEEC---CCCEEEEecccccCCCHH
Confidence            10 0000                    00111111111    23489999999999943   678999999988876653

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=97.93  E-value=3.3e-05  Score=82.17  Aligned_cols=37  Identities=22%  Similarity=0.056  Sum_probs=29.6

Q ss_pred             CCccccCCCCCcEEEeecC--CCcEEEEeecceeccChh
Q 004254          453 HGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPN  489 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~--~g~l~LiDFGlv~~L~~~  489 (765)
                      .+++|+|+||+||++++..  .+.+.+|||+.+..-++.
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G~~~  221 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGHRA  221 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEECTT
T ss_pred             CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcCCCH
Confidence            5799999999999997411  157999999998876653

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=97.85  E-value=5.8e-05  Score=81.68  Aligned_cols=76  Identities=14%  Similarity=0.204  Sum_probs=49.8

Q ss_pred             cCcccccccceeEEEEEEeCC----------eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHH
Q 004254          296 FDVEPIAAASLGQVHRARLKG----------EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (765)
Q Consensus       296 fd~~PIgsaSiGQVhrA~l~G----------~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~  365 (765)
                      +..+|++.|....+|+....+          +.+++|+-.++....                                  
T Consensus        36 ~~~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~----------------------------------   81 (369)
T 3c5i_A           36 LRVKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDEL----------------------------------   81 (369)
T ss_dssp             EEEEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGT----------------------------------
T ss_pred             eEEEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccce----------------------------------
Confidence            455789999999999998843          789999886653221                                  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCCh
Q 004254          366 ECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKI  422 (765)
Q Consensus       366 E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L  422 (765)
                               +|...|++.+..+.+.     ++ +|+++...  ..+++|||++|.++
T Consensus        82 ---------~~~~~E~~~l~~L~~~-----g~-~P~~~~~~--~~~~v~e~i~G~~l  121 (369)
T 3c5i_A           82 ---------YNTISEFEVYKTMSKY-----KI-APQLLNTF--NGGRIEEWLYGDPL  121 (369)
T ss_dssp             ---------SCHHHHHHHHHHHHHT-----TS-SCCEEEEE--TTEEEEECCCSEEC
T ss_pred             ---------ecHHHHHHHHHHHHhc-----CC-CCceEEec--CCcEEEEEecCCcC
Confidence                     0224566666666542     34 78888644  45899999999765

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=97.69  E-value=0.00015  Score=79.86  Aligned_cols=163  Identities=20%  Similarity=0.268  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHhCCChhhh-hcccCcccccccceeEEEEEEeC---------CeEEEEEEecCCchhhHHHHHHHHHHHHH
Q 004254          275 ETAVSIVEEELGAPLDDV-FERFDVEPIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAE  344 (765)
Q Consensus       275 ~~v~~iie~elG~~~eei-F~~fd~~PIgsaSiGQVhrA~l~---------G~~VAVKVqrP~i~~~i~~DL~il~~la~  344 (765)
                      +.+..++.+-++..|..+ -+.++-+++..|-..++|+....         ++.|++|+..+....              
T Consensus        31 ~~~~~~~~~~l~~~W~~~~~~~l~v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~~--------------   96 (379)
T 3feg_A           31 RRAYQWCREYLGGAWRRVQPEELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQG--------------   96 (379)
T ss_dssp             HHHHHHHHHHHCGGGGGCCGGGCCCEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---CC--------------
T ss_pred             HHHHHHHHHHccCcCCCCCcCceEEEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCccch--------------
Confidence            345556666676667654 24567789999999999999872         478999985221100              


Q ss_pred             HHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhh
Q 004254          345 YLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINR  424 (765)
Q Consensus       345 ~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d  424 (765)
                                                   -.+..+|++++..+.+.     ++ .|+++....+  -++|||++|..++.
T Consensus        97 -----------------------------~~~~~rE~~vl~~L~~~-----gv-~P~ll~~~~~--g~v~e~i~G~~l~~  139 (379)
T 3feg_A           97 -----------------------------VDSLVLESVMFAILAER-----SL-GPQLYGVFPE--GRLEQYIPSRPLKT  139 (379)
T ss_dssp             -----------------------------HHHHHHHHHHHHHHHHT-----TS-SCCEEEEETT--EEEEECCSEEECCG
T ss_pred             -----------------------------HHHHHHHHHHHHHHHhc-----CC-CCeEEEEcCC--ccEEEEecCccCCh
Confidence                                         01345788888887762     23 4888865443  49999999987753


Q ss_pred             hh---------------hhhhc----C--CC-H-HHHHHHH---------------------HH---HHHHHHH-----h
Q 004254          425 IQ---------------SLDEL----G--VD-R-KRLGRYA---------------------VE---SYLEQIL-----S  452 (765)
Q Consensus       425 ~~---------------~l~~~----g--~d-~-~~ia~~l---------------------i~---~~L~qi~-----~  452 (765)
                      -.               .+...    +  .. . .++....                     +.   ..+...+     .
T Consensus       140 ~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~L~~~~~~  219 (379)
T 3feg_A          140 QELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSP  219 (379)
T ss_dssp             GGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHHHHHHTSCCC
T ss_pred             hHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHhhcCCC
Confidence            10               01111    1  01 0 1111110                     00   0112222     2


Q ss_pred             CCccccCCCCCcEEEeec--CCCcEEEEeecceeccCh
Q 004254          453 HGFFHADPHPGNIAVDDV--NGGRLIFYDFGMMGSISP  488 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~--~~g~l~LiDFGlv~~L~~  488 (765)
                      ..+.|+|+|++||++++.  +++.+.+|||-.++.-++
T Consensus       220 ~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~~~~  257 (379)
T 3feg_A          220 VVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSYNYR  257 (379)
T ss_dssp             EEEECSCCCGGGEEEESCC---CCEEECCCTTCEEEEH
T ss_pred             cEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCcCCh
Confidence            368999999999999852  126899999999987665

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=97.65  E-value=0.00019  Score=80.04  Aligned_cols=51  Identities=20%  Similarity=0.226  Sum_probs=34.7

Q ss_pred             HHHHHHHHHhCCChhhhh-cccCcccccccceeEEEEEEeC---------CeEEEEEEecC
Q 004254          276 TAVSIVEEELGAPLDDVF-ERFDVEPIAAASLGQVHRARLK---------GEEVVVKVQRP  326 (765)
Q Consensus       276 ~v~~iie~elG~~~eeiF-~~fd~~PIgsaSiGQVhrA~l~---------G~~VAVKVqrP  326 (765)
                      .+++++.+-++..|..+= ..++.++++.|-...||+....         ++.|++|+-++
T Consensus        55 ~a~~l~~~~l~~~w~~~~~~~~~v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~  115 (429)
T 1nw1_A           55 RAHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFN  115 (429)
T ss_dssp             HHHHHHHHHHCTHHHHCCGGGEEEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECS
T ss_pred             HHHHHHHHhccCCcCCCCccceEEEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCC
Confidence            345555555665555331 2345578999999999999873         47899998744

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=97.21  E-value=0.0012  Score=74.24  Aligned_cols=77  Identities=9%  Similarity=0.213  Sum_probs=50.8

Q ss_pred             cCcccccccceeEEEEEEeCC--eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          296 FDVEPIAAASLGQVHRARLKG--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       296 fd~~PIgsaSiGQVhrA~l~G--~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      ++-++|+.|-...+|+....+  ..+++|+..++....+                                         
T Consensus       111 ~~i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~i-----------------------------------------  149 (458)
T 2qg7_A          111 LEFQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEII-----------------------------------------  149 (458)
T ss_dssp             EEEEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSCS-----------------------------------------
T ss_pred             eEEEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhhc-----------------------------------------
Confidence            345789999999999999854  8999998866532221                                         


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChh
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKIN  423 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~  423 (765)
                        |-..|++.+..+.+     .++ .|+++....  ..++|||++|.++.
T Consensus       150 --dR~~E~~vl~~L~~-----~gl-~P~ll~~~~--~G~v~e~I~G~~l~  189 (458)
T 2qg7_A          150 --NREREKKISCILYN-----KNI-AKKIYVFFT--NGRIEEFMDGYALS  189 (458)
T ss_dssp             --CHHHHHHHHHHHTT-----SSS-BCCEEEEET--TEEEEECCCSEECC
T ss_pred             --CHHHHHHHHHHHHh-----cCC-CCCEEEEeC--CeEEEEeeCCccCC
Confidence              22456666666654     223 588886543  45699999997664

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=97.19  E-value=0.0031  Score=70.34  Aligned_cols=98  Identities=12%  Similarity=0.249  Sum_probs=64.0

Q ss_pred             hHHHHHHHHHHhCCChhhhh-cccCcccccccceeEEEEEEeC---------CeEEEEEEecCCchhhHHHHHHHHHHHH
Q 004254          274 SETAVSIVEEELGAPLDDVF-ERFDVEPIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIA  343 (765)
Q Consensus       274 ~~~v~~iie~elG~~~eeiF-~~fd~~PIgsaSiGQVhrA~l~---------G~~VAVKVqrP~i~~~i~~DL~il~~la  343 (765)
                      .+.+.+++.+.+.. |..+- ..++-+++..|-...+|+....         ++.+++|+..++....            
T Consensus        51 ~~~l~~l~~~~~p~-w~~~~~~~~~v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~~------------  117 (424)
T 3mes_A           51 TEIIIGICRKNIPG-WKEINESYIEVKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKF------------  117 (424)
T ss_dssp             HHHHHHHHHHHSTT-CTTCCGGGEEEEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-CC------------
T ss_pred             HHHHHHHHHHHcCc-cccCCCCceEEEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcchh------------
Confidence            34455555555442 33211 2345678999999999999984         6889999875543221            


Q ss_pred             HHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChh
Q 004254          344 EYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKIN  423 (765)
Q Consensus       344 ~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~  423 (765)
                                                     +|-.+|.+++..+.+.     ++ +|+++...  ..+++|||++|..++
T Consensus       118 -------------------------------idR~~E~~~l~~L~~~-----gi-~P~l~~~~--~~~~I~efI~G~~l~  158 (424)
T 3mes_A          118 -------------------------------YDSKVELDVFRYLSNI-----NI-APNIIADF--PEGRIEEFIDGEPLT  158 (424)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHT-----TS-SCCEEEEE--TTEEEEECCCSEECC
T ss_pred             -------------------------------cCHHHHHHHHHHHHhc-----CC-CCCEEEEc--CCCEEEEEeCCccCC
Confidence                                           1345677777777652     24 68888533  458999999997754

>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3

Probab=88.27  E-value=2.2  Score=45.94  Aligned_cols=78  Identities=18%  Similarity=0.285  Sum_probs=43.8

Q ss_pred             CeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHHHH-HHHHHHHhCC--c---cccCCCCCcEEEeecCCCcEEEEeec
Q 004254          409 PQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYAVE-SYLEQILSHG--F---FHADPHPGNIAVDDVNGGRLIFYDFG  481 (765)
Q Consensus       409 ~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~li~-~~L~qi~~~G--f---fHaDpHPGNILV~~~~~g~l~LiDFG  481 (765)
                      ...++|||++|.++.+...... .-+..+. ...+.+ ..+..++..+  +   .+.-=.|+|||+.+ +++++..||.+
T Consensus       156 ~~~l~meyv~G~~L~e~~~~~~~~~f~~~~-~k~LG~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~~-~n~~~~~IDhn  233 (342)
T 1cja_A          156 ANILLMELVRGITLNKLTTTSAPEVLTKST-MQQLGSLMALDVIVNNSDRLPIAWTNEGNLDNIMLSE-RGATVVPIDSK  233 (342)
T ss_dssp             SEEEEEECCCEEESTTCCSSSHHHHSCHHH-HHHHHHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEES-BTTCEEECSCC
T ss_pred             cceehhhhcCCCccccchhhhhhhhcCHHH-HHhhchhheehhhhcCCccCcccccCCCChhheEEeC-CCCeEEEEcCC
Confidence            4569999999998876432100 0012222 222222 2344444321  2   11124789999986 34579999999


Q ss_pred             ceeccCh
Q 004254          482 MMGSISP  488 (765)
Q Consensus       482 lv~~L~~  488 (765)
                      ++..-+.
T Consensus       234 ~af~~~s  240 (342)
T 1cja_A          234 IIPLDAS  240 (342)
T ss_dssp             CCCCCSS
T ss_pred             ccccCCc
Confidence            9975443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	765
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-06
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	3e-05
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	6e-05
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	9e-05
d1zyla1	325	d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId:	1e-04
d1nd4a_	255	d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferas	1e-04
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	7e-04
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	9e-04
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	0.001
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	0.001
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	0.002
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	0.004

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 34/207 (16%), Positives = 58/207 (28%), Gaps = 56/207 (27%)

Query: 285 LGAPLDDVFERFDVEPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAE 344
           +G   D  F +FD+E I   S   V++       V V       + L   + +  +  AE
Sbjct: 2   VGMSNDGRFLKFDIE-IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAE 60

Query: 345 YLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW 404
            L+ +   +       V  YD   S +  +                              
Sbjct: 61  MLKGLQHPN------IVRFYDSWESTVKGKKCI--------------------------- 87

Query: 405 EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL---------SHGF 455
                 +L  E +         +L       K +    + S+  QIL         +   
Sbjct: 88  ------VLVTELMTS------GTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPI 135

Query: 456 FHADPHPGNIAVDDVNGGRLIFYDFGM 482
            H D    NI +     G +   D G+
Sbjct: 136 IHRDLKCDNIFITGPT-GSVKIGDLGL 161

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 29/210 (13%), Positives = 63/210 (30%), Gaps = 62/210 (29%)

Query: 290 DDVFERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYL 346
           D V + +D+ E +   + G VHR   +  G     K     +    + D + +R   + +
Sbjct: 22  DHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF----VMTPHESDKETVRKEIQTM 77

Query: 347 QKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY 406
             +           V ++D                                      +E 
Sbjct: 78  SVLR------HPTLVNLHD-------------------------------------AFED 94

Query: 407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS-------HGFFHAD 459
               ++  E++ G ++      +++  +  ++       Y+ Q+         + + H D
Sbjct: 95  DNEMVMIYEFMSGGEL-----FEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLD 149

Query: 460 PHPGNIAVDDVNGGRLIFYDFGMMGSISPN 489
             P NI         L   DFG+   + P 
Sbjct: 150 LKPENIMFTTKRSNELKLIDFGLTAHLDPK 179

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 29/204 (14%), Positives = 68/204 (33%), Gaps = 52/204 (25%)

Query: 291 DVFERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQ 347
            V++ +D+ E + + + G VHR   K  G   V K     +   + +D   ++     + 
Sbjct: 26  SVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKF----INTPYPLDKYTVKNEISIMN 81

Query: 348 KIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT 407
           ++           + ++D                                      +E  
Sbjct: 82  QLH------HPKLINLHD-------------------------------------AFEDK 98

Query: 408 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNI 465
              +L +E++ G ++    + ++  +    +  Y  +    L+ +  H   H D  P NI
Sbjct: 99  YEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENI 158

Query: 466 AVDDVNGGRLIFYDFGMMGSISPN 489
             +      +   DFG+   ++P+
Sbjct: 159 MCETKKASSVKIIDFGLATKLNPD 182

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 42.7 bits (100), Expect = 9e-05
 Identities = 29/209 (13%), Positives = 57/209 (27%), Gaps = 55/209 (26%)

Query: 293 FERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKI 349
           +E ++  E +       V R   K   +E  VK+        F  +              
Sbjct: 2   YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAE-------------- 47

Query: 350 DPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTP 409
                           E      +E+D  ++ +            + +++   +   T  
Sbjct: 48  -------------EVQELREATLKEVDILRKVSG---------HPNIIQLKDTYETNTFF 85

Query: 410 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL-------SHGFFHADPHP 462
             L  + +          L +   ++  L        +  +L            H D  P
Sbjct: 86  -FLVFDLMKK------GELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKP 138

Query: 463 GNIAVDDVNGGRLIFYDFGMMGSISPNIR 491
            NI +DD    +L   DFG    + P  +
Sbjct: 139 ENILLDDDMNIKLT--DFGFSCQLDPGEK 165

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 23/191 (12%), Positives = 50/191 (26%), Gaps = 12/191 (6%)

Query: 308 QVHRARLK-GEEVVVKVQRPGLKDLFDI--DLKNLRVIAEYLQKIDPKSDGAKRDWVAIY 364
           +V++ + +     VVK  RP       I  + +    +      +        +  +   
Sbjct: 37  RVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQ 96

Query: 365 DECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINR 424
               +V         EA N +   +  + +  +        +     + +          
Sbjct: 97  GFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKL 156

Query: 425 IQSLDELGVDRKRLGRYAVESYLEQI-------LSHGFFHADPHPGNIAVDDVNGGRLIF 477
            +    +    K     A +  +  +        +    H D H GNI   D  G   + 
Sbjct: 157 FEDATLIPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWRD--GPMFVD 214

Query: 478 YDFGMMGSISP 488
            D    G    
Sbjct: 215 LDDARNGPAVQ 225

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]} Length = 255

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 28/246 (11%), Positives = 63/246 (25%), Gaps = 23/246 (9%)

Query: 286 GAP--LDDVFERFDVEPIAA-ASLGQVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRV 341
           G+P    +    +D        S   V R   +    + VK    G  +    +   L  
Sbjct: 1   GSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSW 60

Query: 342 IAE-YLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVP 400
           +A   +          +     +             +   A    + A   + +  +   
Sbjct: 61  LATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLSSHLAPAEKVSIMADAMRRLHTLDPA 120

Query: 401 TIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHG---FFH 457
           T  +++     +       ++   +   D     +             ++         H
Sbjct: 121 TCPFDHQAKHRIE-RARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTH 179

Query: 458 ADPHPGNIAVDDVNGGRLIF----------YDFGMM-GSISPNIREGLLEAF---YGIYE 503
            D    NI V++      I            D  +    I+  +     + F   YGI  
Sbjct: 180 GDACLPNIMVENGRFSGFIDCGRLGVADRYQDIALATRDIAEELGGEWADRFLVLYGIAA 239

Query: 504 KDADKV 509
            D+ ++
Sbjct: 240 PDSQRI 245

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 45/238 (18%), Positives = 69/238 (28%), Gaps = 72/238 (30%)

Query: 290 DDVFERF-DVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYL 346
           DD  + F D+  I   S G V+ AR     E V +K      K   +   +++     +L
Sbjct: 11  DDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS-NEKWQDIIKEVRFL 69

Query: 347 QKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEY 406
           QK+         + +                                          +  
Sbjct: 70  QKLR------HPNTIQYRG-------------------------------------CYLR 86

Query: 407 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL-------SHGFFHAD 459
                L MEY  G       + D L V +K L    + +     L       SH   H D
Sbjct: 87  EHTAWLVMEYCLG------SASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRD 140

Query: 460 PHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR----------EGLLEAFYGIYEKDAD 507
              GNI + +   G +   DFG    ++P             E +L    G Y+   D
Sbjct: 141 VKAGNILLSE--PGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVD 196

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 9e-04
 Identities = 29/215 (13%), Positives = 62/215 (28%), Gaps = 54/215 (25%)

Query: 293 FERFDV-EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDP 351
            +   + + I     G V     +G +V VK     +K+  D   +     A  + ++  
Sbjct: 6   MKELKLLQTIGKGEFGDVMLGDYRGNKVAVKC----IKN--DATAQAFLAEASVMTQLR- 58

Query: 352 KSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQI 411
                  + V +                                      +  E      
Sbjct: 59  -----HSNLVQLLG------------------------------------VIVEEKGGLY 77

Query: 412 LTMEYVPGIKI-NRIQSLDELGVDRKRLGRYAVE--SYLEQILSHGFFHADPHPGNIAVD 468
           +  EY+    + + ++S     +    L +++++    +E +  + F H D    N+ V 
Sbjct: 78  IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVS 137

Query: 469 DVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYE 503
           +         DFG+    S     G L   +   E
Sbjct: 138 E--DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPE 170

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 0.001
 Identities = 29/206 (14%), Positives = 62/206 (30%), Gaps = 43/206 (20%)

Query: 288 PLDDVFERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAE 344
           P  D   +++    I   + G+V +AR +  G++V +K     +++  +          +
Sbjct: 4   PFCDEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVL--MENEKEGFPITALREIK 61

Query: 345 YLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW 404
            LQ +         + V + + C +                      K   Y        
Sbjct: 62  ILQLLK------HENVVNLIEICRTKASPYNRC--------------KGSIY-------- 93

Query: 405 EYTTPQILTMEYVP-GIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPG 463
                  L  ++    +       L +  +   +     + + L  I  +   H D    
Sbjct: 94  -------LVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAA 146

Query: 464 NIAVDDVNGGRLIFYDFGMMGSISPN 489
           N+ +     G L   DFG+  + S  
Sbjct: 147 NVLIT--RDGVLKLADFGLARAFSLA 170

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 15/107 (14%)

Query: 412 LTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL-------SHGFFHADPHPGN 464
             + Y           L +               Y  +I+         G  H D  P N
Sbjct: 85  FGLSYAKN------GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPEN 138

Query: 465 IAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQ 511
           I +++     +   DFG    +SP  ++    +F G  +  + ++L 
Sbjct: 139 ILLNE--DMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLT 183

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 29/207 (14%), Positives = 57/207 (27%), Gaps = 65/207 (31%)

Query: 294 ERFDV-EPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKID 350
           + F+    + A + G V +   K  G  +  K+      ++       +    + L + +
Sbjct: 6   DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIH---LEIKPAIRNQIIRELQVLHECN 62

Query: 351 PKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQ 410
                     V  Y                                       +      
Sbjct: 63  ------SPYIVGFYG-------------------------------------AFYSDGEI 79

Query: 411 ILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILS--------HGFFHADPHP 462
            + ME++ G       SLD++     R+    +      ++         H   H D  P
Sbjct: 80  SICMEHMDG------GSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKP 133

Query: 463 GNIAVDDVNGGRLIFYDFGMMGSISPN 489
            NI V+    G +   DFG+ G +  +
Sbjct: 134 SNILVNS--RGEIKLCDFGVSGQLIDS 158

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 0.004
 Identities = 35/206 (16%), Positives = 58/206 (28%), Gaps = 60/206 (29%)

Query: 288 PLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVKVQRPGLKDLFDIDLKNLRVIAEY 345
           PL+  ++      + +   G V+          V +K         +       RV  E 
Sbjct: 1   PLESQYQV--GPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEV 58

Query: 346 --LQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIF 403
             L+K+     G     + + D                                     +
Sbjct: 59  VLLKKVSSGFSGV----IRLLD-------------------------------------W 77

Query: 404 WEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQIL-------SHGFF 456
           +E     +L +E    +     Q L +   +R  L      S+  Q+L       + G  
Sbjct: 78  FERPDSFVLILERPEPV-----QDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVL 132

Query: 457 HADPHPGNIAVDDVNGGRLIFYDFGM 482
           H D    NI +D  N G L   DFG 
Sbjct: 133 HRDIKDENILIDL-NRGELKLIDFGS 157

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	765
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.78
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.78
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.77
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.77
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.77
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.76
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.76
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.76
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.75
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.75
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.74
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.74
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.74
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.74
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.74
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.74
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.73
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.73
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.73
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.72
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.72
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.72
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.72
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.72
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.71
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.71
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.71
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.7
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.7
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.7
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.69
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.69
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.68
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.67
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.66
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.66
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.66
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.66
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.65
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.64
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.64
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.64
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.64
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.64
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.63
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.63
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.62
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.62
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.62
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.6
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.59
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.58
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.56
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.56
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.55
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.55
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.54
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.51
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.47
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.39
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	98.79
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.4
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	98.33
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	98.31
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	97.54
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	96.82

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.78  E-value=8.5e-20  Score=196.84  Aligned_cols=193  Identities=17%  Similarity=0.216  Sum_probs=135.0

Q ss_pred             hhhhcccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHH
Q 004254          290 DDVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE  366 (765)
Q Consensus       290 eeiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E  366 (765)
                      ..+|+.|+. +.||+|+||.||+|+.  +|+.||||+.+......                                   
T Consensus        25 ~~~~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~-----------------------------------   69 (352)
T d1koba_          25 GSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLD-----------------------------------   69 (352)
T ss_dssp             SCGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHH-----------------------------------
T ss_pred             CCcccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhH-----------------------------------
Confidence            356776654 7899999999999998  69999999874321100                                   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--H
Q 004254          367 CASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--E  444 (765)
Q Consensus       367 ~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~  444 (765)
                             +-.+.+|++.+.++    . +++|.--.-+.+.....+|||||++|++|.+........++...+...+.  -
T Consensus        70 -------~~~~~~Ei~il~~l----~-HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~  137 (352)
T d1koba_          70 -------KYTVKNEISIMNQL----H-HPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQAC  137 (352)
T ss_dssp             -------HHHHHHHHHHHTTC----C-STTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHhC----C-CCCCCcEEEEEEECCEEEEEEEcCCCChHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence                   01234455544443    2 33332222222345667999999999999875433333456665544433  3


Q ss_pred             HHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004254          445 SYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (765)
Q Consensus       445 ~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D  524 (765)
                      ..+..+|..|++|||+||+|||++...+++++|+|||++..+++....       ....+++.+++++++.-...++.+|
T Consensus       138 ~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~D  210 (352)
T d1koba_         138 EGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIV-------KVTTATAEFAAPEIVDREPVGFYTD  210 (352)
T ss_dssp             HHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCE-------EEECSSGGGCCHHHHTTCCBCHHHH
T ss_pred             HHHHHHHHCCeeecccccccccccccCCCeEEEeecccceecCCCCce-------eeccCcccccCHHHHcCCCCCCccc
Confidence            448889999999999999999998544789999999999988764321       1235678888999988777777889


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++.-.+.+++
T Consensus       211 iwSlGvilyell  222 (352)
T d1koba_         211 MWAIGVLGYVLL  222 (352)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            999998776665

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.78  E-value=5e-19  Score=173.52  Aligned_cols=151  Identities=16%  Similarity=0.176  Sum_probs=98.9

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      ++||+|++|+||+|++ +|++||||+++++.....               ...     ..++..    ............
T Consensus         6 ~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~---------------~~~-----~~~~~~----~~~~~~~~~~~~   61 (191)
T d1zara2           6 KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFK---------------KVK-----EKRDYG----DLHFSVLAIRSA   61 (191)
T ss_dssp             EEEEECSSEEEEEEEETTTEEEEEEEECC---------------------CCC-----C-----------CHHHHHHHHH
T ss_pred             CEeeeCcceEEEEEECCCCCEEEEEEEecccchhh---------------hhh-----hhhhhc----cHHHHHHHHHHH
Confidence            5899999999999998 899999999998754210               000     000000    000001112334


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHHHHHHHHHhCCccc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFH  457 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~~~L~qi~~~GffH  457 (765)
                      ..|..++.++.       ++.+|..|.  ....+|+|||++|.++.++.     ......++..++ ..+.++|..|++|
T Consensus        62 ~~e~~~l~~l~-------~~~v~~~~~--~~~~~lvme~~~~~~~~~l~-----~~~~~~i~~ql~-~~l~~lH~~giiH  126 (191)
T d1zara2          62 RNEFRALQKLQ-------GLAVPKVYA--WEGNAVLMELIDAKELYRVR-----VENPDEVLDMIL-EEVAKFYHRGIVH  126 (191)
T ss_dssp             HHHHHHHHHTT-------TSSSCCEEE--EETTEEEEECCCCEEGGGCC-----CSCHHHHHHHHH-HHHHHHHHTTEEC
T ss_pred             HHHHHHHHHcc-------CCCcceEEE--ecCCEEEEEeeccccccchh-----hHHHHHHHHHHH-HHHHHHhhCCEEE
Confidence            55677776653       356777763  34569999999998776532     123445555444 4578899999999


Q ss_pred             cCCCCCcEEEeecCCCcEEEEeecceeccChhhH
Q 004254          458 ADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIR  491 (765)
Q Consensus       458 aDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r  491 (765)
                      +|+||+|||++   ++.+++||||++...+....
T Consensus       127 rDiKP~NILv~---~~~~~liDFG~a~~~~~~~~  157 (191)
T d1zara2         127 GDLSQYNVLVS---EEGIWIIDFPQSVEVGEEGW  157 (191)
T ss_dssp             SCCSTTSEEEE---TTEEEECCCTTCEETTSTTH
T ss_pred             ccCChhheeee---CCCEEEEECCCcccCCCCCc
Confidence            99999999998   45699999999988875543

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.5e-19  Score=190.21  Aligned_cols=182  Identities=19%  Similarity=0.165  Sum_probs=129.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+..-...                                    .+      .
T Consensus        26 ~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~------------------------------------~~------~   63 (293)
T d1yhwa1          26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK------------------------------------KE------L   63 (293)
T ss_dssp             EECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSC------------------------------------HH------H
T ss_pred             EEEecCcCcEEEEEEECCCCCEEEEEEEecccChH------------------------------------HH------H
Confidence            5799999999999998  69999999874321100                                    01      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|++.+.++    . +++|.-..-+.......+|||||++|++|.++..  ..+++...+...+.+  ..+..+|..|
T Consensus        64 ~~~E~~il~~l----~-HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~~~--~~~l~~~~~~~i~~qi~~aL~yLH~~~  136 (293)
T d1yhwa1          64 IINEILVMREN----K-NPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT--ETCMDEGQIAAVCRECLQALEFLHSNQ  136 (293)
T ss_dssp             HHHHHHHHHHC----C-CTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CCCEeeEeEEEEECCEEEEEEEecCCCcHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            44555555444    2 3443322222344566799999999999998653  345665555444333  4488899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|||+||.|||++.  +|+++|+|||++..+++.....      ....+++.++++++..-+..++.+|++++.-.+.+
T Consensus       137 iiHrDiKp~NILl~~--~~~vkl~DFG~a~~~~~~~~~~------~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilye  208 (293)
T d1yhwa1         137 VIHRDIKSDNILLGM--DGSVKLTDFGFCAQITPEQSKR------STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIE  208 (293)
T ss_dssp             EECCCCSGGGEEECT--TCCEEECCCTTCEECCSTTCCB------CCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHH
T ss_pred             CcccCCcHHHeEECC--CCcEeeccchhheeeccccccc------cccccCCCccChhhhcCCCCCchhceehHhHHHHH
Confidence            999999999999985  8999999999999886543211      11247888999999988777888999999987776


Q ss_pred             HHH
Q 004254          535 FLN  537 (765)
Q Consensus       535 ~l~  537 (765)
                      ++.
T Consensus       209 mlt  211 (293)
T d1yhwa1         209 MIE  211 (293)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            653

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=5.9e-19  Score=185.73  Aligned_cols=189  Identities=15%  Similarity=0.161  Sum_probs=118.0

Q ss_pred             ccccccceeEEEEEEe--CCe---EEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGE---EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~---~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||+|+||+||+|++  +|+   .||||..+++..+.                                   .      
T Consensus        32 ~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------~------   70 (299)
T d1jpaa_          32 QVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEK-----------------------------------Q------   70 (299)
T ss_dssp             EEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHH-----------------------------------H------
T ss_pred             eEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHH-----------------------------------H------
Confidence            6899999999999998  343   58899875543221                                   0      


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQIL  451 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~  451 (765)
                      .-+|.+|++.+.++    . +++|.--.-+.......++||||++|++|.++.......++...+...+  +...+..+|
T Consensus        71 ~~~~~~E~~~l~~l----~-HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH  145 (299)
T d1jpaa_          71 RRDFLSEASIMGQF----D-HPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLA  145 (299)
T ss_dssp             HHHHHHHHHHHTTC----C-CTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC----C-CCCCccEEEEEeeCCEEEEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            01355666655544    2 3443222222234567799999999999998665444445555444433  334588899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      ..|++|||+||.|||++.  ++.++|+|||+++.+.+...........+ ..+.+.+++++....+..++.+|++++.-.
T Consensus       146 ~~~iiHrDlKp~NILl~~--~~~~Kl~DFGla~~~~~~~~~~~~~~~~~-~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvv  222 (299)
T d1jpaa_         146 DMNYVHRDLAARNILVNS--NLVCKVSDFGLSRFLEDDTSDPTYTSALG-GKIPIRWTAPEAIQYRKFTSASDVWSYGIV  222 (299)
T ss_dssp             HTTCCCSCCCGGGEEECT--TCCEEECCC------------------------CGGGSCHHHHHSCCCCHHHHHHHHHHH
T ss_pred             hCCCccCccccceEEECC--CCcEEECCcccceEccCCCCcceeeeccc-ccCCccccCHHHHhcCCCCcccccccchHH
Confidence            999999999999999985  89999999999998765433221111111 234677899999988888888899999987


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       223 l~el~  227 (299)
T d1jpaa_         223 MWEVM  227 (299)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76554

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6e-19  Score=181.97  Aligned_cols=183  Identities=14%  Similarity=0.070  Sum_probs=121.7

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|+||+||+|++ +|+.||||+.+.+...                                           +-+|
T Consensus        11 ~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~-------------------------------------------~~~~   47 (263)
T d1sm2a_          11 QEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS-------------------------------------------EEDF   47 (263)
T ss_dssp             EEEECCSSCCEEEEEETTTEEEEEEECCSSSSC-------------------------------------------HHHH
T ss_pred             EEEeeCCCeEEEEEEECCCCEEEEEEECCCcCc-------------------------------------------HHHH
Confidence            5799999999999999 7899999987543211                                           0146


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~Gf  455 (765)
                      .+|++.+.+++     +++|.--.-+.......+|||||++|++|.++........+.......+  +...+..+|..|+
T Consensus        48 ~~E~~~l~~l~-----HpnIv~~~g~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~i  122 (263)
T d1sm2a_          48 IEEAEVMMKLS-----HPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACV  122 (263)
T ss_dssp             HHHHHHHHHCC-----CTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcC-----CCCcccccceeccCCceEEEEEecCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhccce
Confidence            67777776653     3433222222234567899999999999998754433444544443332  2334788999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFF  535 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~~  535 (765)
                      +|||+||.||+++.  ++.++|+|||++..+........     ....+...+++++++..+..++.+|++++.-.+.++
T Consensus       123 iHrDlKp~Nill~~--~~~~Kl~DFGla~~~~~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el  195 (263)
T d1sm2a_         123 IHRDLAARNCLVGE--NQVIKVSDFGMTRFVLDDQYTSS-----TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEV  195 (263)
T ss_dssp             CCTTCSGGGEEECG--GGCEEECSCC-----------------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             eecccchhheeecC--CCCeEecccchheeccCCCceee-----cceecCcccCChHHhcCCCCCchhhhcchHHHHHHH
Confidence            99999999999986  78999999999988765433211     112356678899998888788888999998776655


Q ss_pred             H
Q 004254          536 L  536 (765)
Q Consensus       536 l  536 (765)
                      +
T Consensus       196 ~  196 (263)
T d1sm2a_         196 F  196 (263)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.4e-19  Score=185.98  Aligned_cols=190  Identities=16%  Similarity=0.160  Sum_probs=129.5

Q ss_pred             hhhhhcccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHH
Q 004254          289 LDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE  366 (765)
Q Consensus       289 ~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E  366 (765)
                      +++.|+-  .+.||+|+||.||+|+.  +|+.||||+.+....+.                            .      
T Consensus        10 p~d~Y~i--~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~----------------------------~------   53 (288)
T d2jfla1          10 PEDFWEI--IGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEE----------------------------L------   53 (288)
T ss_dssp             GGGTEEE--EEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGG----------------------------G------
T ss_pred             cccCeEE--eEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHH----------------------------H------
Confidence            4454432  25799999999999998  69999999985432211                            0      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--H
Q 004254          367 CASVLYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--V  443 (765)
Q Consensus       367 ~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i  443 (765)
                              -.|.+|++.+.++    . +++| .+-.++ ......+|||||++|++|.++.......++...+...+  +
T Consensus        54 --------~~~~~E~~il~~l----~-HpnIv~l~~~~-~~~~~~~lvmEy~~~g~L~~~~~~~~~~l~e~~~~~i~~qi  119 (288)
T d2jfla1          54 --------EDYMVEIDILASC----D-HPNIVKLLDAF-YYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQT  119 (288)
T ss_dssp             --------GGTHHHHHHHHHC----C-CTTBCCEEEEE-EETTEEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHhC----C-CCCCCeEEEEE-eeCCeEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHH
Confidence                    0234566555544    2 3433 232333 33566799999999999998754333446655544433  3


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH-----cCC
Q 004254          444 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ-----MGV  518 (765)
Q Consensus       444 ~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~-----lG~  518 (765)
                      -..+..+|+.|++|+|+||+|||++.  +|.++|+|||++..+......      .....+++.+++++++.     .+.
T Consensus       120 ~~gL~ylH~~~ivHrDiKp~NIll~~--~~~~Kl~DFG~a~~~~~~~~~------~~~~~Gt~~y~APE~l~~~~~~~~~  191 (288)
T d2jfla1         120 LDALNYLHDNKIIHRDLKAGNILFTL--DGDIKLADFGVSAKNTRTIQR------RDSFIGTPYWMAPEVVMCETSKDRP  191 (288)
T ss_dssp             HHHHHHHHHTTEECCCCSGGGEEECT--TSCEEECCCTTCEECHHHHHH------HTCCCSCCTTCCHHHHTTCSTTTSS
T ss_pred             HHHHHHHHHCCEEEeecChhheeECC--CCCEEEEechhhhccCCCccc------ccccccccccCCHHHHhhcccCCCC
Confidence            34478899999999999999999986  889999999999877553221      12245788899999874     233


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 004254          519 LVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       519 ~~~~~D~~~l~~~~~~~l  536 (765)
                      .++.+|++++.-.+.+++
T Consensus       192 y~~k~DiwSlGvilyeml  209 (288)
T d2jfla1         192 YDYKADVWSLGITLIEMA  209 (288)
T ss_dssp             TTTHHHHHHHHHHHHHHH
T ss_pred             CChhhhHHHHHHHHHHHh
Confidence            456679999987776654

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.76  E-value=4.3e-19  Score=191.09  Aligned_cols=192  Identities=16%  Similarity=0.234  Sum_probs=134.3

Q ss_pred             hhhcccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004254          291 DVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (765)
Q Consensus       291 eiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (765)
                      .+.+.|+- +.||+|+||+||+|+.  +|+.||||+....-...                                    
T Consensus        23 ~il~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~------------------------------------   66 (350)
T d1koaa2          23 HVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESD------------------------------------   66 (350)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHH------------------------------------
T ss_pred             CCccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhh------------------------------------
Confidence            34455543 7899999999999998  69999999874321100                                    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HH
Q 004254          368 ASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ES  445 (765)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~  445 (765)
                            .-.+.+|++.+.++.    +..-|.+-.++ +.....+|||||++|++|.+........++...+...+.  -.
T Consensus        67 ------~~~~~~E~~il~~l~----HpnIv~~~~~~-~~~~~~~ivmE~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~  135 (350)
T d1koaa2          67 ------KETVRKEIQTMSVLR----HPTLVNLHDAF-EDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCK  135 (350)
T ss_dssp             ------HHHHHHHHHHHHHTC----CTTBCCEEEEE-EETTEEEEEECCCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHhCC----CCCCCcEEEEE-EECCEEEEEEEcCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence                  012445666665552    22223333333 345677999999999999886533333455555544433  34


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004254          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (765)
Q Consensus       446 ~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~  525 (765)
                      .+..+|..|++|+|+||+|||+....++.++|+|||++..+++....       ....+++.++++++..-...+...|+
T Consensus       136 aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~-------~~~~gT~~Y~aPEv~~~~~~~~~~Di  208 (350)
T d1koaa2         136 GLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV-------KVTTGTAEFAAPEVAEGKPVGYYTDM  208 (350)
T ss_dssp             HHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCE-------EEECSCTTTCCHHHHHTCCBCHHHHH
T ss_pred             HHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheeccccccc-------ceecCcccccCHHHHcCCCCChhHhh
Confidence            48889999999999999999997534689999999999988764321       12356788999999887766777899


Q ss_pred             HHHHHHHHHHH
Q 004254          526 TAVRRTAQFFL  536 (765)
Q Consensus       526 ~~l~~~~~~~l  536 (765)
                      +++.-.+.+++
T Consensus       209 wSlGvilyell  219 (350)
T d1koaa2         209 WSVGVLSYILL  219 (350)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hhhhHHHHHHH
Confidence            99998776665

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.8e-19  Score=183.34  Aligned_cols=184  Identities=19%  Similarity=0.164  Sum_probs=128.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|+||+|+.  +|+.||||+.++.....                                 .+.      +-.
T Consensus        12 ~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~---------------------------------~~~------~~~   52 (263)
T d2j4za1          12 RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK---------------------------------AGV------EHQ   52 (263)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH---------------------------------TTC------HHH
T ss_pred             EEEecCCCcEEEEEEECCCCcEEEEEEEchHHccC---------------------------------hHH------HHH
Confidence            6899999999999999  59999999874311000                                 000      112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +.+|++.+.++    . +|+|.--.-+....+..+|||||++|++|.+.... ...++...+...+.  -..++.+|..|
T Consensus        53 ~~~E~~il~~l----~-hpnIv~~~~~~~~~~~~~ivmEy~~~g~L~~~l~~-~~~l~e~~~~~i~~qi~~al~~lH~~~  126 (263)
T d2j4za1          53 LRREVEIQSHL----R-HPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHSKR  126 (263)
T ss_dssp             HHHHHHHHHTC----C-CTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhc----C-CCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            34555544443    2 34332222222334567999999999999886542 23455555444433  33478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||+|||++.  ++.++|+|||++...+.....        ...+++.+++|++..-...++.+|++++.-.+.+
T Consensus       127 ivHrDiKp~Nill~~--~~~~kl~DFG~a~~~~~~~~~--------~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilye  196 (263)
T d2j4za1         127 VIHRDIKPENLLLGS--AGELKIADFGWSVHAPSSRRT--------TLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYE  196 (263)
T ss_dssp             CCCCCCCGGGEEECT--TSCEEECCCCSCSCCCCCCCE--------ETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred             eeeeeeccccceecC--CCCEeecccceeeecCCCccc--------ccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHH
Confidence            999999999999986  889999999999887654321        1357889999999987777888999999987776


Q ss_pred             HHH
Q 004254          535 FLN  537 (765)
Q Consensus       535 ~l~  537 (765)
                      ++.
T Consensus       197 ll~  199 (263)
T d2j4za1         197 FLV  199 (263)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            653

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.7e-19  Score=190.08  Aligned_cols=181  Identities=16%  Similarity=0.190  Sum_probs=126.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|+||.||+|+.  +|+.||||+.+......                                   ...      .
T Consensus        12 ~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~-----------------------------------~~~------~   50 (322)
T d1s9ja_          12 SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPA-----------------------------------IRN------Q   50 (322)
T ss_dssp             EEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTT-----------------------------------HHH------H
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHH-----------------------------------HHH------H
Confidence            6799999999999998  69999999985543221                                   111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh-
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS-  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~-  452 (765)
                      +.+|++.+..+    . +|+| .+-.++ ...+..+|||||++|++|.++... ...++...+...+.  -..+..+|+ 
T Consensus        51 ~~~Ei~il~~l----~-HpnIv~l~~~~-~~~~~~~iVmEy~~gg~L~~~l~~-~~~l~~~~~~~~~~qil~aL~yLH~~  123 (322)
T d1s9ja_          51 IIRELQVLHEC----N-SPYIVGFYGAF-YSDGEISICMEHMDGGSLDQVLKK-AGRIPEQILGKVSIAVIKGLTYLREK  123 (322)
T ss_dssp             HHHHGGGGGGC----C-CTTBCCEEEEE-ECSSEEEEEEECCTTEEHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----C-CCCCCcEEEEE-EECCEEEEEEEcCCCCcHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            23344333322    2 3333 222222 334567999999999999987542 23355444433332  234778886 


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      +|++|||+||+|||+++  +|+++|+|||++..+.+.....        ..++..+++++++.-+..++..|++++.-.+
T Consensus       124 ~~IiHRDiKP~NILl~~--~~~vkl~DFGla~~~~~~~~~~--------~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil  193 (322)
T d1s9ja_         124 HKIMHRDVKPSNILVNS--RGEIKLCDFGVSGQLIDSMANS--------FVGTRSYMSPERLQGTHYSVQSDIWSMGLSL  193 (322)
T ss_dssp             HCCCCSCCSGGGEEECT--TCCEEECCCCCCHHHHHHTC-----------CCSSCCCCHHHHHCSCCCTTHHHHHHHHHH
T ss_pred             CCEEccccCHHHeeECC--CCCEEEeeCCCccccCCCcccc--------ccCCccccCchHHcCCCCCcHHHHHHHHHHH
Confidence            69999999999999986  8999999999998775543221        2467889999999888888899999999887


Q ss_pred             HHHHH
Q 004254          533 QFFLN  537 (765)
Q Consensus       533 ~~~l~  537 (765)
                      .+++.
T Consensus       194 ~ell~  198 (322)
T d1s9ja_         194 VEMAV  198 (322)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77653

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.4e-19  Score=187.94  Aligned_cols=191  Identities=16%  Similarity=0.257  Sum_probs=133.9

Q ss_pred             hhhcccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004254          291 DVFERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (765)
Q Consensus       291 eiF~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (765)
                      ++|+.+.. +.||+|+||+||+|+.  +|+.||||+.+..-.+                                     
T Consensus         2 ~~~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~-------------------------------------   44 (321)
T d1tkia_           2 ELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTD-------------------------------------   44 (321)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHH-------------------------------------
T ss_pred             CCccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCccc-------------------------------------
Confidence            56776654 7899999999999998  6999999988442110                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HH
Q 004254          368 ASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ES  445 (765)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~  445 (765)
                            +..+.+|.+.+..+    .+..-|.+-.++ +..+..+|||||++|++|.+........++...+...+.  -.
T Consensus        45 ------~~~~~~Ei~il~~l----~HpnIv~~~~~~-~~~~~~~lvmE~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~  113 (321)
T d1tkia_          45 ------QVLVKKEISILNIA----RHRNILHLHESF-ESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCE  113 (321)
T ss_dssp             ------HHHHHHHHHHHHHS----CCTTBCCEEEEE-EETTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHhC----CCCCCCeEEEEE-EECCEEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence                  11234455544443    232223333333 345678999999999999886543333466666554443  34


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCH
Q 004254          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT  525 (765)
Q Consensus       446 ~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~  525 (765)
                      .++.+|..|++|||+||.|||++..+.++++++|||++..+......       ....+.+.+++++...-....+.+|+
T Consensus       114 al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~-------~~~~~t~~y~ape~~~~~~~~~~~Di  186 (321)
T d1tkia_         114 ALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNF-------RLLFTAPEYYAPEVHQHDVVSTATDM  186 (321)
T ss_dssp             HHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEE-------EEEESCGGGSCHHHHTTCEECHHHHH
T ss_pred             HHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhccccCCcc-------cccccccccccchhccCCCCCchhhc
Confidence            58889999999999999999998534568999999999887654321       11345678888888877767778899


Q ss_pred             HHHHHHHHHHH
Q 004254          526 TAVRRTAQFFL  536 (765)
Q Consensus       526 ~~l~~~~~~~l  536 (765)
                      +++.-.+.+++
T Consensus       187 WSlGvily~ll  197 (321)
T d1tkia_         187 WSLGTLVYVLL  197 (321)
T ss_dssp             HHHHHHHHHHH
T ss_pred             ccHHHHHHHHH
Confidence            99998776665

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.2e-18  Score=182.59  Aligned_cols=185  Identities=16%  Similarity=0.187  Sum_probs=125.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|+||+|+.  +|+.||||+.+.....                ..                 +..+      .
T Consensus        14 ~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~----------------~~-----------------~~~~------~   54 (288)
T d1uu3a_          14 KILGEGSFSTVVLARELATSREYAIKILEKRHII----------------KE-----------------NKVP------Y   54 (288)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHH----------------HT-----------------TCHH------H
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEehHHcc----------------CH-----------------HHHH------H
Confidence            6899999999999998  6999999987421100                00                 0001      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~  452 (765)
                      +.+|.+.+.++    . +++|.  +.|.  +.....+|||||++|++|.++... ...++...+...+  +-..++.+|.
T Consensus        55 ~~~E~~il~~l----~-HpnIv--~l~~~~~~~~~~~ivmEy~~gg~L~~~~~~-~~~l~e~~~~~~~~qi~~al~ylH~  126 (288)
T d1uu3a_          55 VTRERDVMSRL----D-HPFFV--KLYFTFQDDEKLYFGLSYAKNGELLKYIRK-IGSFDETCTRFYTAEIVSALEYLHG  126 (288)
T ss_dssp             HHHHHHHHHHC----C-STTBC--CEEEEEECSSEEEEEECCCTTEEHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc----C-CCCee--EEEEEEEECCEEEEEEEccCCCCHHHhhhc-cCCCCHHHHHHHHHHHHHHHHhhcc
Confidence            44555555444    2 23332  3332  334556999999999999886432 2334544443332  2344788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      .|++|||+||+||++++  +|.++|+|||+++.++........    ....+++.++++++..-...++.+|++++.-.+
T Consensus       127 ~~iiHrDiKp~NIll~~--~~~vkl~DFG~a~~~~~~~~~~~~----~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvil  200 (288)
T d1uu3a_         127 KGIIHRDLKPENILLNE--DMHIQITDFGTAKVLSPESKQARA----NSFVGTAQYVSPELLTEKSACKSSDLWALGCII  200 (288)
T ss_dssp             TTEECSCCSGGGEEECT--TSCEEECCCTTCEECC--------------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             ccEEcCcCCccccccCC--CceEEecccccceecccCCccccc----ccccCCccccCceeeccCCCCcccceehhhHHH
Confidence            99999999999999986  889999999999988765433221    123578999999999877777788999999877


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       201 yell  204 (288)
T d1uu3a_         201 YQLV  204 (288)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6665

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1e-18  Score=181.98  Aligned_cols=185  Identities=13%  Similarity=0.107  Sum_probs=123.1

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +.||+|+||.||+|++++ .||||+.+......                             ..           .-.|.
T Consensus        14 ~~lG~G~fg~Vy~~~~~~-~vAvK~~~~~~~~~-----------------------------~~-----------~~~~~   52 (276)
T d1uwha_          14 QRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTP-----------------------------QQ-----------LQAFK   52 (276)
T ss_dssp             SEEEECSSCEEEEEESSS-EEEEEECCCSSCCT-----------------------------TH-----------HHHHH
T ss_pred             EEEeeCCCcEEEEEEECC-EEEEEEEEcccCCH-----------------------------HH-----------HHHHH
Confidence            679999999999999865 59999986432111                             00           01355


Q ss_pred             HHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCcc
Q 004254          379 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGFF  456 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~Gff  456 (765)
                      +|+..+.++     ++++|.--.-+ ......+|||||++|++|.+........++...+...+  +...+..+|..|++
T Consensus        53 ~E~~~l~~l-----~HpnIv~~~~~-~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~iv  126 (276)
T d1uwha_          53 NEVGVLRKT-----RHVNILLFMGY-STAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSII  126 (276)
T ss_dssp             HHHHHHTTC-----CCTTBCCEEEE-ECSSSCEEEEECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhC-----CCCCEeeeeEE-EeccEEEEEEecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcCCEe
Confidence            666655544     23444321222 22355799999999999998764444446655554443  33458889999999


Q ss_pred             ccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC---CCCCCCCHHHHHHHHH
Q 004254          457 HADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG---VLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       457 HaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG---~~~~~~D~~~l~~~~~  533 (765)
                      |||+||.|||++.  ++.++|+|||++...+.......    ..-..+++.+++++++...   ..+..+|++++.-.+.
T Consensus       127 HrDlKp~NiLl~~--~~~~Kl~DFGla~~~~~~~~~~~----~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~  200 (276)
T d1uwha_         127 HRDLKSNNIFLHE--DLTVKIGDFGLATVKSRWSGSHQ----FEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLY  200 (276)
T ss_dssp             CSCCCGGGEEEET--TSSEEECCCCCSCC----------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHEEEcC--CCCEEEccccceeeccccCCccc----ccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHH
Confidence            9999999999986  89999999999988765433221    1224578899999998642   3455679999988776


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       201 el~  203 (276)
T d1uwha_         201 ELM  203 (276)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=2.1e-18  Score=182.57  Aligned_cols=189  Identities=19%  Similarity=0.191  Sum_probs=131.1

Q ss_pred             ChhhhhcccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHH
Q 004254          288 PLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (765)
Q Consensus       288 ~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~  365 (765)
                      ++++.|..+  +.||+|+||.||+|+.  +|+.||||+.+......                                 .
T Consensus        12 dp~~~y~~l--~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~---------------------------------~   56 (309)
T d1u5ra_          12 DPEKLFSDL--REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS---------------------------------N   56 (309)
T ss_dssp             CHHHHEEEE--EEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCH---------------------------------H
T ss_pred             CcHHhcEee--EEEecCCCeEEEEEEECCCCcEEEEEEEchhhccC---------------------------------H
Confidence            455555543  5799999999999998  69999999885432211                                 0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-cccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH-
Q 004254          366 ECASVLYQEIDYTQEAANAELFASNFKDMDY-VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV-  443 (765)
Q Consensus       366 E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~-V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li-  443 (765)
                      +..      -++.+|++.+.++    . +++ |.+-.++ ......+|||||++|+.+..+.. ....++...+...+. 
T Consensus        57 ~~~------~~~~~Ei~il~~l----~-HpnIv~~~~~~-~~~~~~~iv~E~~~~g~l~~~~~-~~~~l~e~~~~~i~~q  123 (309)
T d1u5ra_          57 EKW------QDIIKEVRFLQKL----R-HPNTIQYRGCY-LREHTAWLVMEYCLGSASDLLEV-HKKPLQEVEIAAVTHG  123 (309)
T ss_dssp             HHH------HHHHHHHHHHTTC----C-CTTBCCEEEEE-EETTEEEEEEECCSEEHHHHHHH-HTSCCCHHHHHHHHHH
T ss_pred             HHH------HHHHHHHHHHHHC----C-CCCEeeEEEEE-EECCEEEEEEEecCCCchHHHHH-hCCCCCHHHHHHHHHH
Confidence            001      1345566555443    2 333 3333333 33456799999999998865432 334456555444333 


Q ss_pred             -HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHH---cCCC
Q 004254          444 -ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQ---MGVL  519 (765)
Q Consensus       444 -~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~---lG~~  519 (765)
                       ...+..+|..|++|||+||.|||+++  ++.++|+|||++........          ..+++.+++++++.   .+..
T Consensus       124 i~~aL~yLH~~~iiHrDiKp~NILl~~--~~~~Kl~DFG~a~~~~~~~~----------~~GT~~Y~APE~~~~~~~~~y  191 (309)
T d1u5ra_         124 ALQGLAYLHSHNMIHRDVKAGNILLSE--PGLVKLGDFGSASIMAPANS----------FVGTPYWMAPEVILAMDEGQY  191 (309)
T ss_dssp             HHHHHHHHHHTTCBCCCCSGGGEEEET--TTEEEECCCTTCBSSSSBCC----------CCSCGGGCCHHHHTTTTSCCB
T ss_pred             HHHHHHHHHhCCEeccCCCcceEEECC--CCCEEEeecccccccCCCCc----------cccCccccCHHHHhccCCCCc
Confidence             34588899999999999999999986  89999999999998766432          35789999999984   2445


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 004254          520 VPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       520 ~~~~D~~~l~~~~~~~l  536 (765)
                      ++.+|++++.-.+.+++
T Consensus       192 ~~~~DiwSlGvilyel~  208 (309)
T d1u5ra_         192 DGKVDVWSLGITCIELA  208 (309)
T ss_dssp             CTHHHHHHHHHHHHHHH
T ss_pred             CchhhhhhHHHHHHHHH
Confidence            66789999998776665

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.3e-18  Score=178.17  Aligned_cols=187  Identities=14%  Similarity=0.140  Sum_probs=123.9

Q ss_pred             ccccccceeEEEEEEeC--C----eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK--G----EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~--G----~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +.||+|+||.||+|.++  +    ..||||+.+++..+.                                         
T Consensus        13 ~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~-----------------------------------------   51 (283)
T d1mqba_          13 KVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEK-----------------------------------------   51 (283)
T ss_dssp             EEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHH-----------------------------------------
T ss_pred             eEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChH-----------------------------------------
Confidence            67999999999999982  2    479999885543211                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQI  450 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi  450 (765)
                      .+.+|.+|++.+.+++     +++|.--.-+.......+++|||++|+.+.+........++...+...+.  ...++.+
T Consensus        52 ~~~~~~~E~~il~~l~-----H~nIv~~~g~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~l  126 (283)
T d1mqba_          52 QRVDFLGEAGIMGQFS-----HHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYL  126 (283)
T ss_dssp             HHHHHHHHHHHHHTCC-----CTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC-----CCCEeeeeEEEecCCceEEEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhc
Confidence            1234667777666542     23332212222334567999999999998886544444455555544433  3458899


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      |..|++|+|+||+|||++.  ++.++|+|||+++.+.........   .....+++.+++++.+..+..++.+|++++.-
T Consensus       127 H~~~iiHrDlKp~NILl~~--~~~~Kl~DFGla~~~~~~~~~~~~---~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gv  201 (283)
T d1mqba_         127 ANMNYVHRDLAARNILVNS--NLVCKVSDFGLSRVLEDDPEATYT---TSGGKIPIRWTAPEAISYRKFTSASDVWSFGI  201 (283)
T ss_dssp             HHTTCCCSCCCGGGEEECT--TCCEEECCCCC--------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHH
T ss_pred             cccccccCccccceEEECC--CCeEEEcccchhhcccCCCccceE---eccCCCCccccCHHHHccCCCCCcccccccHH
Confidence            9999999999999999986  899999999999887654332221   11224577899999999888888889999987


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       202 il~el~  207 (283)
T d1mqba_         202 VMWEVM  207 (283)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766554

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=9.4e-19  Score=183.10  Aligned_cols=183  Identities=14%  Similarity=0.055  Sum_probs=127.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|+||+||+|++  +|+.||||+.+.+..+.                                           -+
T Consensus        23 ~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~-------------------------------------------~~   59 (287)
T d1opja_          23 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-------------------------------------------EE   59 (287)
T ss_dssp             EETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCH-------------------------------------------HH
T ss_pred             eEEeeCCCeEEEEEEECCCCeEEEEEEECCccchH-------------------------------------------HH
Confidence            6799999999999999  59999999875432110                                           03


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      |.+|++.+.+++     +++|.--.-+.......+|||||++|+++.+..... ...++...+...+  +...++.+|..
T Consensus        60 ~~~E~~il~~l~-----HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~  134 (287)
T d1opja_          60 FLKEAAVMKEIK-----HPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK  134 (287)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCC-----CCCEecCCccEeeCCeeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHC
Confidence            556776666552     343322222223345679999999999998865322 2334444443332  33458889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|||+||.|||++.  ++.++|+|||++..++.......     ....+...+++++....+..++..|++++.-.+.
T Consensus       135 ~iiHrDlKp~NILl~~--~~~~Kl~DFG~a~~~~~~~~~~~-----~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~  207 (287)
T d1opja_         135 NFIHRDLAARNCLVGE--NHLVKVADFGLSRLMTGDTYTAH-----AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLW  207 (287)
T ss_dssp             TCCCSCCSGGGEEECG--GGCEEECCCCCTTTCCSSSSEEE-----TTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHH
T ss_pred             CcccCccccCeEEECC--CCcEEEccccceeecCCCCceee-----ccccccccccChHHHcCCCCCchhhhhhHHHHHH
Confidence            9999999999999986  78999999999987765422111     1123566788888888888888889999987766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       208 ell  210 (287)
T d1opja_         208 EIA  210 (287)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=1.5e-18  Score=183.41  Aligned_cols=184  Identities=15%  Similarity=0.094  Sum_probs=115.7

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|+||.||+|+.  +|+.||||+......+.                                         .+-.
T Consensus        15 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~-----------------------------------------~~~~   53 (307)
T d1a06a_          15 DVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEG-----------------------------------------KEGS   53 (307)
T ss_dssp             EESBSGGGGGEEEEEETTTCCEEEEEEEEC--------------------------------------------------
T ss_pred             EEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhh-----------------------------------------HHHH
Confidence            6799999999999998  59999999874321110                                         0012


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +.+|.+.+.++    . +|+|.--.-+.+..+..+|||||++|++|.+.... ...++...+...+.  -..+..+|..|
T Consensus        54 ~~~Ei~il~~l----~-HpnIv~l~~~~~~~~~~~lvmE~~~gg~L~~~l~~-~~~l~e~~~~~~~~qi~~al~ylH~~~  127 (307)
T d1a06a_          54 MENEIAVLHKI----K-HPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVE-KGFYTERDASRLIFQVLDAVKYLHDLG  127 (307)
T ss_dssp             -CHHHHHHHTC----C-CTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHT-CSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CCCCCcEEEEEEECCEEEEEEeccCCCcHHHhhhc-ccCCCHHHHHHHHHHHHHHHHhhhhce
Confidence            34555544443    2 34332222222345567999999999999886532 23455554443333  33478899999


Q ss_pred             ccccCCCCCcEEEee-cCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDD-VNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~-~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|+||+||++.. .+++.++|+|||++...++.....       ...+++.+++|+++.-+..++.+|++++.-.+.
T Consensus       128 iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~~-------~~~GT~~y~APE~~~~~~~~~~~DiwSlGvily  200 (307)
T d1a06a_         128 IVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLS-------TACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAY  200 (307)
T ss_dssp             CCCSCCCGGGEEESSSSTTCCEEECCC-------------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHH
T ss_pred             eeeEEecccceeecccCCCceEEEeccceeEEccCCCeee-------eeeeCccccCcHHHcCCCCCcHHHhhhhhHHHH
Confidence            999999999999963 236889999999998876543211       123678899999998877788899999998776


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       201 ell  203 (307)
T d1a06a_         201 ILL  203 (307)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.3e-19  Score=186.58  Aligned_cols=186  Identities=18%  Similarity=0.185  Sum_probs=125.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|+||.||+|+.  +|+.||||+.+..-...                                   ..      -+
T Consensus        11 ~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~-----------------------------------~~------~~   49 (271)
T d1nvra_          11 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-----------------------------------CP------EN   49 (271)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECC------------------------------------------------C
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEehhhcch-----------------------------------HH------HH
Confidence            6899999999999998  69999999874321000                                   00      13


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|++.+.++     ++++|.--.-+.+..+..+|||||++|++|.+.... ...++...+...+  +-..++.+|..|
T Consensus        50 ~~~Ei~~l~~l-----~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~l~~-~~~l~e~~~~~i~~qi~~al~ylH~~~  123 (271)
T d1nvra_          50 IKKEICINKML-----NHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEP-DIGMPEPDAQRFFHQLMAGVVYLHGIG  123 (271)
T ss_dssp             HHHHHHHHHTC-----CCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSBT-TTBCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC-----CCCCEeeEeeeeccCceeEEEEeccCCCcHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence            45566555444     234332222222335567899999999999887532 2235544443333  234478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~-~~~~D~~~l~~~~~  533 (765)
                      ++|||+||+|||+++  ++.++|+|||++..++.......    ..-..+++.+++++++...-. +..+|++++.-.+.
T Consensus       124 IiHrDiKp~NILl~~--~~~~KL~DFG~a~~~~~~~~~~~----~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvily  197 (271)
T d1nvra_         124 ITHRDIKPENLLLDE--RDNLKISDFGLATVFRYNNRERL----LNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLT  197 (271)
T ss_dssp             EECSCCCGGGEEECT--TCCEEECCCTTCEECEETTEECC----BCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHH
T ss_pred             CccCcccHHHEEECC--CCCEEEccchhheeeccCCcccc----ccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHH
Confidence            999999999999985  78999999999998754332111    011246889999998876544 45679999988777


Q ss_pred             HHHH
Q 004254          534 FFLN  537 (765)
Q Consensus       534 ~~l~  537 (765)
                      +++.
T Consensus       198 eml~  201 (271)
T d1nvra_         198 AMLA  201 (271)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6653

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=3.6e-18  Score=176.89  Aligned_cols=189  Identities=22%  Similarity=0.200  Sum_probs=123.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.++.....                                 .+.      ...
T Consensus        13 ~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~---------------------------------~~~------~~~   53 (277)
T d1o6ya_          13 EILGFGGMSEVHLARDLRLHRDVAVKVLRADLARD---------------------------------PSF------YLR   53 (277)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTC---------------------------------HHH------HHH
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccC---------------------------------HHH------HHH
Confidence            6899999999999998  69999999986643221                                 001      113


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC---CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s---t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~  451 (765)
                      |.+|++.+.++    .+..-|.+-.++....   ...+|||||++|++|.+.... ...++...+...+.+  ..+.++|
T Consensus        54 ~~~E~~~l~~~----~hpniv~~~~~~~~~~~~~~~~~lvmE~~~g~~L~~~~~~-~~~l~~~~~~~i~~qi~~al~~lH  128 (277)
T d1o6ya_          54 FRREAQNAAAL----NHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHT-EGPMTPKRAIEVIADACQALNFSH  128 (277)
T ss_dssp             HHHHHHHHHTC----CCTTBCCEEEEEEEECSSSEEEEEEEECCCEEEHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCCCcccceeeeccCCCceEEEEEECCCCCEehhhhcc-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45666655443    2222222223332211   125899999999999876432 234555544443332  3488899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRT  531 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~  531 (765)
                      +.|++|||+||+||+++.  ++.++++|||....+.........   .....+++.+++++....+..++.+|++++.-.
T Consensus       129 ~~~iiHrDiKP~NIll~~--~~~~~l~d~~~~~~~~~~~~~~~~---~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvi  203 (277)
T d1o6ya_         129 QNGIIHRDVKPANIMISA--TNAVKVMDFGIARAIADSGNSVTQ---TAAVIGTAQYLSPEQARGDSVDARSDVYSLGCV  203 (277)
T ss_dssp             HTTEECCCCSGGGEEEET--TSCEEECCCTTCEECC-------------------TTCCHHHHTTCCCCHHHHHHHHHHH
T ss_pred             hCCccCccccCcccccCc--cccceeehhhhhhhhccccccccc---cccccCcccccCHHHHcCCCCCcceecccchHH
Confidence            999999999999999986  889999999998876554322111   122346788999999887777788899999987


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       204 lyell  208 (277)
T d1o6ya_         204 LYEVL  208 (277)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77665

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.3e-18  Score=182.06  Aligned_cols=184  Identities=13%  Similarity=0.129  Sum_probs=128.5

Q ss_pred             cccccceeEEEEEEe----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          300 PIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       300 PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      .||+|+||.||+|++    ++..||||+.+++..+.                                         ..-
T Consensus        16 ~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~-----------------------------------------~~~   54 (285)
T d1u59a_          16 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKA-----------------------------------------DTE   54 (285)
T ss_dssp             EEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHH-----------------------------------------HHH
T ss_pred             EEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHH-----------------------------------------HHH
Confidence            599999999999987    25689999986543221                                         001


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004254          376 DYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~  452 (765)
                      +|.+|++-+.++.     +++| .+-.++  .+...+|||||++|++|.++.......++...+...+.+  ..+..+|+
T Consensus        55 ~~~~E~~il~~l~-----HpnIv~l~g~~--~~~~~~lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~  127 (285)
T d1u59a_          55 EMMREAQIMHQLD-----NPYIVRLIGVC--QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEE  127 (285)
T ss_dssp             HHHHHHHHHHHCC-----CTTBCCEEEEE--ESSSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-----CCCEeeEeeee--ccCeEEEEEEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHh
Confidence            3566776665542     3333 222222  235679999999999999875433344565555544433  45888999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      .|++|+|+||.||+++.  ++.++|+|||+++.+........   ......+.+.+++++++..+..++..|++++.-.+
T Consensus       128 ~~iiHrDlKp~Nill~~--~~~~Kl~DFGla~~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l  202 (285)
T d1u59a_         128 KNFVHRDLAARNVLLVN--RHYAKISDFGLSKALGADDSYYT---ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTM  202 (285)
T ss_dssp             TTEECCCCSGGGEEEEE--TTEEEECCCTTCEECTTCSCEEC---CCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHH
T ss_pred             CCeecCcCchhheeecc--CCceeeccchhhhcccccccccc---cccccccCccccChHHHhCCCCCccchhhcchHHH
Confidence            99999999999999987  89999999999998765321110   00112356778899998888888888999998876


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       203 ~E~l  206 (285)
T d1u59a_         203 WEAL  206 (285)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=3.4e-18  Score=181.44  Aligned_cols=181  Identities=17%  Similarity=0.195  Sum_probs=125.9

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|+||+|+.  +|+.||||+.+......                 .                +..+      .
T Consensus        10 ~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~-----------------~----------------~~~~------~   50 (316)
T d1fota_          10 RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVR-----------------L----------------KQVE------H   50 (316)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH-----------------T----------------TCHH------H
T ss_pred             EEEecCcCcEEEEEEECCCCCEEEEEEEchHHccC-----------------H----------------HHHH------H
Confidence            6899999999999998  59999999974321000                 0                0001      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHHHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVESYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~~L~qi~~~  453 (765)
                      +.+|+..+.++    . +|+| .+-.++ ......++||||++|+.+.++.... .......+...  .+...+..+|..
T Consensus        51 ~~~E~~il~~l----~-HpnIv~~~~~~-~~~~~~~ivmE~~~gg~l~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH~~  123 (316)
T d1fota_          51 TNDERLMLSIV----T-HPFIIRMWGTF-QDAQQIFMIMDYIEGGELFSLLRKS-QRFPNPVAKFYAAEVCLALEYLHSK  123 (316)
T ss_dssp             HHHHHHHHHSC----C-BTTBCCEEEEE-ECSSEEEEEECCCCSCBHHHHHHHT-SSCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhc----c-CcChhheeeeE-eeCCeeeeEeeecCCcccccccccc-ccccccHHHHHHHHHHHhhhhhccC
Confidence            34455444333    2 2333 222222 3356679999999999988765322 23333332222  234457889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||+|||++.  +|.++|+|||++..+.....         ...+++.+++++++.-...++..|++++.-.+.
T Consensus       124 ~iiHrDiKp~NILl~~--~g~vkL~DFG~a~~~~~~~~---------~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvily  192 (316)
T d1fota_         124 DIIYRDLKPENILLDK--NGHIKITDFGFAKYVPDVTY---------TLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIY  192 (316)
T ss_dssp             TEECCCCCGGGEEECT--TSCEEECCCSSCEECSSCBC---------CCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHH
T ss_pred             cEEccccCchheeEcC--CCCEEEecCccceEeccccc---------cccCcccccCHHHHcCCCCCchhhccccchhHH
Confidence            9999999999999985  89999999999998865432         245788999999998777788899999998777


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       193 eml  195 (316)
T d1fota_         193 EML  195 (316)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.2e-18  Score=178.72  Aligned_cols=181  Identities=16%  Similarity=0.140  Sum_probs=126.6

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|+||.||+|++ +|+.||||+.+.+....                                           -.|
T Consensus        19 ~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~-------------------------------------------~~~   55 (272)
T d1qpca_          19 ERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSP-------------------------------------------DAF   55 (272)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECTTSSCH-------------------------------------------HHH
T ss_pred             EEEecCCCcEEEEEEECCCCEEEEEEEccCcCCH-------------------------------------------HHH
Confidence            6799999999999999 57899999884422100                                           035


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeec-cCCCeEEEEeecCCCChhhhhhhh-hcCCCHHHHHHHHH--HHHHHHHHhC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLD-ELGVDRKRLGRYAV--ESYLEQILSH  453 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e-~st~~vLVMEyieG~~L~d~~~l~-~~g~d~~~ia~~li--~~~L~qi~~~  453 (765)
                      .+|+..+.+++     +++|  .+.|.- .....+|||||++|++|.+..... ...++...+...+.  ...+..+|..
T Consensus        56 ~~E~~~l~~l~-----HpnI--v~~~g~~~~~~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~  128 (272)
T d1qpca_          56 LAEANLMKQLQ-----HQRL--VRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER  128 (272)
T ss_dssp             HHHHHHHHHCC-----CTTB--CCEEEEECSSSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCC-----CCCE--eEEEeeeccCCeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            66776666553     2332  222321 234569999999999998854322 22355554444333  3348889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|||+||.||+++.  ++.++|+|||+++.++......     .....+...+++++....+..++.+|++++.-.+.
T Consensus       129 ~ivHrDiKp~NIll~~--~~~~Kl~DFGla~~~~~~~~~~-----~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~  201 (272)
T d1qpca_         129 NYIHRDLRAANILVSD--TLSCKIADFGLARLIEDNEYTA-----REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLT  201 (272)
T ss_dssp             TEECSCCSGGGEEECT--TSCEEECCCTTCEECSSSCEEC-----CTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHH
T ss_pred             CcccCccchhheeeec--ccceeeccccceEEccCCcccc-----ccccCCcccccChHHHhCCCCCchhhhhhhHHHHH
Confidence            9999999999999985  8999999999999876432110     01124566788999888887788889999998776


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       202 ell  204 (272)
T d1qpca_         202 EIV  204 (272)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.8e-18  Score=179.99  Aligned_cols=189  Identities=13%  Similarity=0.082  Sum_probs=127.6

Q ss_pred             ccCcccccccceeEEEEEEe----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          295 RFDVEPIAAASLGQVHRARL----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       295 ~fd~~PIgsaSiGQVhrA~l----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      .++++.||+|+||+||+|++    .++.||||+.+....+.                                  +.   
T Consensus         9 ~le~k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~----------------------------------~~---   51 (277)
T d1xbba_           9 TLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDP----------------------------------AL---   51 (277)
T ss_dssp             EEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----C----------------------------------HH---
T ss_pred             eecCCCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCH----------------------------------HH---
Confidence            34556799999999999987    25789999884432110                                  00   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHH
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYL  447 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L  447 (765)
                         .-+|.+|++.+.++    . +++| .+-.++  .....+|||||++|++|.++... ...++...+...+.  ...+
T Consensus        52 ---~~~~~~E~~il~~l----~-HpnIv~~~g~~--~~~~~~lvmE~~~~g~L~~~l~~-~~~l~~~~~~~i~~qi~~gl  120 (277)
T d1xbba_          52 ---KDELLAEANVMQQL----D-NPYIVRMIGIC--EAESWMLVMEMAELGPLNKYLQQ-NRHVKDKNIIELVHQVSMGM  120 (277)
T ss_dssp             ---HHHHHHHHHHHHTC----C-CTTBCCEEEEE--ESSSEEEEEECCTTEEHHHHHHH-CTTCCHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHhC----C-CCCCceEEEEe--ccCCEEEEEEcCCCCcHHHHHhh-ccCCCHHHHHHHHHHHHHHH
Confidence               11356676666554    2 3333 222222  23567999999999999987542 23355555544433  3458


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHH
Q 004254          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTA  527 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~  527 (765)
                      ..+|+.|++|+|+||.||+++.  ++.++++|||+++.+.........   .....+.+.+++++....+..++.+|+++
T Consensus       121 ~ylH~~~iiHrDlKp~Nill~~--~~~~kl~DFGla~~~~~~~~~~~~---~~~~~gt~~y~APE~l~~~~~~~~sDiwS  195 (277)
T d1xbba_         121 KYLEESNFVHRDLAARNVLLVT--QHYAKISDFGLSKALRADENYYKA---QTHGKWPVKWYAPECINYYKFSSKSDVWS  195 (277)
T ss_dssp             HHHHHTTEECSCCSGGGEEEEE--TTEEEECCCTTCEECCTTCSEEEC-------CCCGGGCCHHHHHHCEEEHHHHHHH
T ss_pred             hhHHhCCcccCCCcchhhcccc--cCcccccchhhhhhcccccccccc---ccccCCCceecCchhhcCCCCCchhhhcc
Confidence            8899999999999999999986  899999999999877543211100   01124567889999888887788889999


Q ss_pred             HHHHHHHHH
Q 004254          528 VRRTAQFFL  536 (765)
Q Consensus       528 l~~~~~~~l  536 (765)
                      +.-.+.+++
T Consensus       196 ~Gv~l~ell  204 (277)
T d1xbba_         196 FGVLMWEAF  204 (277)
T ss_dssp             HHHHHHHHH
T ss_pred             chhhhhHHh
Confidence            998776654

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.3e-18  Score=178.55  Aligned_cols=185  Identities=15%  Similarity=0.122  Sum_probs=116.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|+||+||+|+.  +|+.||||+.+.+-...                                  ...+      .
T Consensus        10 ~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~----------------------------------~~~~------~   49 (269)
T d2java1          10 YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE----------------------------------AEKQ------M   49 (269)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCH----------------------------------HHHH------H
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCH----------------------------------HHHH------H
Confidence            6899999999999998  69999999885432111                                  0001      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeecc-CCCeEEEEeecCCCChhhhhhh---hhcCCCHHHHHHHHHH--HHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWEY-TTPQILTMEYVPGIKINRIQSL---DELGVDRKRLGRYAVE--SYLEQ  449 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l---~~~g~d~~~ia~~li~--~~L~q  449 (765)
                      +.+|++.+.++    . +|+| .+-.++.+. ....+|||||++|++|.++...   ....++...+...+.+  ..+++
T Consensus        50 ~~~E~~il~~l----~-HpnIv~~~~~~~~~~~~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~y  124 (269)
T d2java1          50 LVSEVNLLREL----K-HPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKE  124 (269)
T ss_dssp             HHHHHHHTTSC----C-CTTBCCEEEEEEC----CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC----C-CCCEeeEEEEEEeCCCCEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHH
Confidence            34555544433    2 2332 222222222 3346899999999999986532   1223555444443332  34788


Q ss_pred             HHhCC-----ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCC
Q 004254          450 ILSHG-----FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGD  524 (765)
Q Consensus       450 i~~~G-----ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D  524 (765)
                      +|..|     ++|||+||+|||++.  ++.++|+|||++..++.....      .....+++.+++++++..+-.++.+|
T Consensus       125 lH~~~~~~~~IiHrDiKp~NIll~~--~~~vkl~DFG~a~~~~~~~~~------~~~~~gt~~Y~APE~l~~~~~~~~~D  196 (269)
T d2java1         125 CHRRSDGGHTVLHRDLKPANVFLDG--KQNVKLGDFGLARILNHDTSF------AKAFVGTPYYMSPEQMNRMSYNEKSD  196 (269)
T ss_dssp             HHHHCC---------CCGGGEEECT--TSCEEECCHHHHHHC-----------------CCCSCCCHHHHTTCCCCHHHH
T ss_pred             HHHhcCCCCCEEeCcCchhhcCcCC--CCcEEEeeccceeecccCCCc------cccCCCCcccCCHHHHcCCCCChHHH
Confidence            88766     999999999999986  899999999999988754321      11234678899999998777778889


Q ss_pred             HHHHHHHHHHHH
Q 004254          525 TTAVRRTAQFFL  536 (765)
Q Consensus       525 ~~~l~~~~~~~l  536 (765)
                      ++++.-.+.+++
T Consensus       197 IwSlGvilyel~  208 (269)
T d2java1         197 IWSLGCLLYELC  208 (269)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHhhCHHHHHHh
Confidence            999998776654

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.1e-17  Score=175.12  Aligned_cols=181  Identities=15%  Similarity=0.119  Sum_probs=125.0

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|+||+||+|++ +++.||||+.+.+-..                                           +-+|
T Consensus        23 ~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~-------------------------------------------~~~~   59 (285)
T d1fmka3          23 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS-------------------------------------------PEAF   59 (285)
T ss_dssp             EEEEECSSCEEEEEEETTTEEEEEEECCTTSSC-------------------------------------------HHHH
T ss_pred             eEEeeCCCeEEEEEEECCCCEEEEEEECcccCC-------------------------------------------HHHH
Confidence            6899999999999999 6788999988432110                                           0146


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeec-cCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhC
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSH  453 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e-~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~l--i~~~L~qi~~~  453 (765)
                      .+|+.++.+++     +++|  .+.|.- ...+.++||||++|+++.+...... ..++...+...+  +...+..+|..
T Consensus        60 ~~E~~~l~~l~-----h~nI--v~~~g~~~~~~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~  132 (285)
T d1fmka3          60 LQEAQVMKKLR-----HEKL--VQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM  132 (285)
T ss_dssp             HHHHHHHHHCC-----CTTB--CCEEEEECSSSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcc-----cCCE--eEEEEEEecCCeEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhh
Confidence            67777776653     2332  223321 2456799999999999887654332 335655554444  33458889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~  533 (765)
                      |++|+|+||.|||+++  ++.++|+|||++..+.+.....     .....+.+.+++++...-+..++..|++++.-.+.
T Consensus       133 ~ivH~DlKp~NIll~~--~~~~kl~DfGla~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~  205 (285)
T d1fmka3         133 NYVHRDLRAANILVGE--NLVCKVADFGLARLIEDNEYTA-----RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLT  205 (285)
T ss_dssp             TCCCSCCSGGGEEECG--GGCEEECCCCTTC-------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             heecccccceEEEECC--CCcEEEcccchhhhccCCCcee-----eccccccccccChHHHhCCCCCcHHhhhcchHHHH
Confidence            9999999999999986  7899999999998775443221     11124677888999998888888899999988776


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       206 el~  208 (285)
T d1fmka3         206 ELT  208 (285)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=9.3e-18  Score=180.52  Aligned_cols=187  Identities=15%  Similarity=0.147  Sum_probs=129.4

Q ss_pred             cccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      +.|+. +.||+|+||.||+|+.  +|+.||||+........                   ..      .        .+ 
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~-------------------~~------~--------~~-   86 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVK-------------------LK------Q--------IE-   86 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH-------------------TT------C--------HH-
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccC-------------------HH------H--------HH-
Confidence            34443 6899999999999998  69999999873211000                   00      0        00 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHH
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLE  448 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~  448 (765)
                           .+.+|.+.+..+     ++++|.-..-+.......++||||++|+.+.+... ....++...+...+.  -..+.
T Consensus        87 -----~~~~E~~il~~l-----~hpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~l~-~~~~l~e~~~~~i~~qi~~aL~  155 (350)
T d1rdqe_          87 -----HTLNEKRILQAV-----NFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVLTFE  155 (350)
T ss_dssp             -----HHHHHHHHHTTC-----CCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHH-HHCCCCHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHc-----CCCcEeecccccccccccccccccccccchhhhHh-hcCCCCHHHHHHHHHHHHHHHH
Confidence                 234555544333     23443222222344556799999999999987653 223455554444333  34488


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      .+|..|++|||+||.|||++.  +|.++|+|||++..++....         ...+++.+++++++.-...++..|++++
T Consensus       156 yLH~~~iiHRDIKP~NILl~~--~g~ikL~DFG~a~~~~~~~~---------~~~Gt~~Y~APE~~~~~~~~~~~DiwSl  224 (350)
T d1rdqe_         156 YLHSLDLIYRDLKPENLLIDQ--QGYIQVTDFGFAKRVKGRTW---------TLCGTPEALAPEIILSKGYNKAVDWWAL  224 (350)
T ss_dssp             HHHHTTEECCCCSGGGEEECT--TSCEEECCCTTCEECSSCBC---------CCEECGGGCCHHHHTTCCBCTHHHHHHH
T ss_pred             HHHhCCEecCcCCHHHcccCC--CCCEEeeeceeeeecccccc---------cccCccccCCHHHHcCCCCCccccccch
Confidence            899999999999999999985  88999999999998875432         2457899999999987777788899999


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      .-.+.+++
T Consensus       225 Gvilyeml  232 (350)
T d1rdqe_         225 GVLIYEMA  232 (350)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            98776665

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.7e-18  Score=174.55  Aligned_cols=182  Identities=15%  Similarity=0.130  Sum_probs=129.9

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|+||.||+|++ ++++||||+.+.+-..                                           +-+|
T Consensus        10 ~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~-------------------------------------------~~~~   46 (258)
T d1k2pa_          10 KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS-------------------------------------------EDEF   46 (258)
T ss_dssp             CCCCEETTEEEEEEEETTTEEEEEEEEESSSSC-------------------------------------------HHHH
T ss_pred             EEEecCCCeEEEEEEECCCCEEEEEEECcCcCC-------------------------------------------HHHH
Confidence            6799999999999999 6889999998543210                                           1145


Q ss_pred             HHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          378 TQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      .+|.+.+.++.     +++| .+-.+ .......++||||++|+.+.+.........+...+...+  +...+..+|..|
T Consensus        47 ~~Ev~~~~~l~-----HpnIv~~~g~-~~~~~~~~iv~Ey~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~  120 (258)
T d1k2pa_          47 IEEAKVMMNLS-----HEKLVQLYGV-CTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ  120 (258)
T ss_dssp             HHHHHHHHTCC-----CTTBCCEEEE-ECCSSSEEEEEECCTTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcC-----CCceeeEEEE-EeeCCceEEEEEccCCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhcC
Confidence            66776666552     2332 22222 233466799999999999988755555556555554443  334588899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||.||+++.  ++.++|+|||++..+.+......     ....++..++++++...+..++.+|++++.-.+.+
T Consensus       121 iiH~dlk~~Nill~~--~~~~kl~DfG~a~~~~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~e  193 (258)
T d1k2pa_         121 FLHRDLAARNCLVND--QGVVKVSDFGLSRYVLDDEYTSS-----VGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWE  193 (258)
T ss_dssp             BCCSCCSGGGEEECT--TCCEEECCCSSCCBCSSSSCCCC-----CCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             cccccccceeEEEcC--CCcEEECcchhheeccCCCceee-----cccCCCCCcCCcHHhcCCCCCcceeecccchhhHh
Confidence            999999999999985  88999999999987765432211     01235667888999888888888899999877655


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       194 l~  195 (258)
T d1k2pa_         194 IY  195 (258)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.71  E-value=2e-17  Score=172.30  Aligned_cols=195  Identities=14%  Similarity=0.120  Sum_probs=128.3

Q ss_pred             cccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      +.|+. +.||.|++|+||+|+.  +|+.||||+.+........                           ..-.++..  
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~---------------------------~~~~~~~~--   53 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFS---------------------------AEEVQELR--   53 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCC---------------------------HHHHHHHH--
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchh---------------------------HHHHHHHH--
Confidence            34443 7899999999999998  6999999987543211100                           00011111  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHH
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYL  447 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L  447 (765)
                          -.+.+|+..+.++..    +++| .+-.++ +.....+|||||++|++|.++... ...++...+....  +-..+
T Consensus        54 ----~~~~~E~~~l~~l~~----hpnIv~~~~~~-~~~~~~~ivmE~~~~g~L~~~l~~-~~~l~e~~~~~~~~qi~~al  123 (277)
T d1phka_          54 ----EATLKEVDILRKVSG----HPNIIQLKDTY-ETNTFFFLVFDLMKKGELFDYLTE-KVTLSEKETRKIMRALLEVI  123 (277)
T ss_dssp             ----HHHHHHHHHHHHHTT----CTTBCCEEEEE-ECSSEEEEEEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhcC----CCCeEEEEeec-ccCcceEEEEEcCCCchHHHHHHh-cCCCCHHHHHHHHHHHHHHH
Confidence                135567777776642    2333 233333 334556999999999999987643 3345655554444  33448


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC------CCCC
Q 004254          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG------VLVP  521 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG------~~~~  521 (765)
                      +.+|..|++|+|+||+||+++.  ++.++|+|||++..+++.....       ...++..+++++.....      ..++
T Consensus       124 ~~lH~~~ivHrDlkp~Nill~~--~~~~kl~DFG~a~~~~~~~~~~-------~~~gt~~y~~PE~~~~~~~~~~~~~~~  194 (277)
T d1phka_         124 CALHKLNIVHRDLKPENILLDD--DMNIKLTDFGFSCQLDPGEKLR-------EVCGTPSYLAPEIIECSMNDNHPGYGK  194 (277)
T ss_dssp             HHHHHTTEECSCCSGGGEEECT--TCCEEECCCTTCEECCTTCCBC-------CCCSCGGGCCHHHHHHHHCTTSCCBCT
T ss_pred             HHHHHcCCcccccccceEEEcC--CCCeEEccchheeEccCCCcee-------eeeccCCCCCHHHhhccccccCCCCCc
Confidence            8899999999999999999985  8999999999999887643211       12345556666665422      2345


Q ss_pred             CCCHHHHHHHHHHHH
Q 004254          522 TGDTTAVRRTAQFFL  536 (765)
Q Consensus       522 ~~D~~~l~~~~~~~l  536 (765)
                      ..|++++.-.+.+++
T Consensus       195 ~~DiwslGvilyeml  209 (277)
T d1phka_         195 EVDMWSTGVIMYTLL  209 (277)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hheEcccchhhhhhc
Confidence            578999987776665

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7.2e-18  Score=176.34  Aligned_cols=187  Identities=16%  Similarity=0.084  Sum_probs=116.5

Q ss_pred             ccccccceeEEEEEEe-------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||+|+||+||+|+.       +|+.||||+.+.+....                                        
T Consensus        19 ~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~----------------------------------------   58 (299)
T d1ywna1          19 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS----------------------------------------   58 (299)
T ss_dssp             EEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHH----------------------------------------
T ss_pred             eEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcH----------------------------------------
Confidence            6899999999999997       24789999875432111                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccc-cceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCCH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVK-VPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVDR  435 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~-vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d~  435 (765)
                       .+-.+.+|...+.++.    +++.|. .-..+.+-....+++|||++|++|.++.....               ..++.
T Consensus        59 -~~~~~~~e~~~l~~~~----~h~~iv~~~~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~  133 (299)
T d1ywna1          59 -EHRALMSELKILIHIG----HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTL  133 (299)
T ss_dssp             -HHHHHHHHHHHHHHHC----CCTTBCCEEEEECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCH
T ss_pred             -HHHHHHHHHHHHHhhc----CCCeEEEeeeeeccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCH
Confidence             0112333444444332    233332 22222222345699999999999998764321               11333


Q ss_pred             HHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHH
Q 004254          436 KRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAM  513 (765)
Q Consensus       436 ~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l  513 (765)
                      ..+...+  +...+..+|..|++|||+||.|||++.  ++.++|+|||+++.+........    .....+++.++++++
T Consensus       134 ~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NILl~~--~~~~Kl~DFGla~~~~~~~~~~~----~~~~~gt~~y~APE~  207 (299)
T d1ywna1         134 EHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSE--KNVVKICDFGLARDIYKDPDYVR----KGDARLPLKWMAPET  207 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECG--GGCEEECC------CCSCTTSCC----TTSCCCGGGGCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcCCcCCccceeECC--CCcEEEccCcchhhccccccccc----cCceeeCccccchhH
Confidence            3443333  334578899999999999999999986  78999999999986654321110    111245678899999


Q ss_pred             HHcCCCCCCCCHHHHHHHHHHHH
Q 004254          514 VQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       514 ~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +.-+..++..|++++.-.+.+++
T Consensus       208 l~~~~~~~~sDiwS~Gvil~ell  230 (299)
T d1ywna1         208 IFDRVYTIQSDVWSFGVLLWEIF  230 (299)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCcccceeehHHHHHHHH
Confidence            88888888889999987776654

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=1.1e-17  Score=180.76  Aligned_cols=187  Identities=16%  Similarity=0.135  Sum_probs=125.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|+||.||+|+.  +|+.||||+..+.-...                                 .      ..+..
T Consensus        10 ~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~---------------------------------~------~~~~~   50 (364)
T d1omwa3          10 RIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKM---------------------------------K------QGETL   50 (364)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHH---------------------------------H------TCHHH
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEEchHHcch---------------------------------h------hHHHH
Confidence            6899999999999998  69999999874211000                                 0      00111


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|.+.+..++ .+ ++++|.--.-+.+.....+|||||++|++|.++... ........+...+  +-..+..+|..|
T Consensus        51 ~~~e~~~~~~l~-~~-~hpnIv~l~~~~~~~~~~~ivmE~~~gg~L~~~l~~-~~~~~e~~~~~~~~qi~~aL~ylH~~~  127 (364)
T d1omwa3          51 ALNERIMLSLVS-TG-DCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQ-HGVFSEADMRFYAAEIILGLEHMHNRF  127 (364)
T ss_dssp             HHHHHHHHHHHS-SS-CCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh-cC-CCCcEEEEEEEEEECCEEEEEEEecCCCcHHHHHHh-cccccHHHHHHHHHHHHHHHHHHHHCC
Confidence            223332222222 12 233332222222344567999999999999986532 2233433333322  334588899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC-CCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV-LVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~-~~~~~D~~~l~~~~~  533 (765)
                      ++|||+||+|||++.  +|.++|+|||++..++....        ....+++.+++++++..+. .++.+|++++.-.+.
T Consensus       128 iiHrDlKP~NILl~~--~g~iKl~DFGla~~~~~~~~--------~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvily  197 (364)
T d1omwa3         128 VVYRDLKPANILLDE--HGHVRISDLGLACDFSKKKP--------HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLF  197 (364)
T ss_dssp             EECCCCSGGGEEECS--SSCEEECCCTTCEECSSSCC--------CSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHH
T ss_pred             ccceeeccceeEEcC--CCcEEEeeeceeeecCCCcc--------cccccccccchhHHhhcCCCCCcccchhHHHHHHH
Confidence            999999999999986  89999999999998876432        1235789999999987553 567789999998877


Q ss_pred             HHHH
Q 004254          534 FFLN  537 (765)
Q Consensus       534 ~~l~  537 (765)
                      +++.
T Consensus       198 emlt  201 (364)
T d1omwa3         198 KLLR  201 (364)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6653

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.1e-17  Score=172.76  Aligned_cols=189  Identities=17%  Similarity=0.144  Sum_probs=128.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|+||.||+|+.  +|+.||||+........                      ......              .-+
T Consensus        16 ~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~----------------------~~~~~~--------------~~~   59 (293)
T d1jksa_          16 EELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKS----------------------SRRGVS--------------RED   59 (293)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTT----------------------CSSSBC--------------HHH
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcch----------------------hhhhHH--------------HHH
Confidence            6799999999999998  59999999875432111                      000000              013


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|++.+.++.     +++|.--.-+.+.....+|||||++|++|.++... ...++...+...+  +-..+..+|..|
T Consensus        60 ~~~E~~il~~l~-----HpnIv~~~~~~~~~~~~~iv~E~~~gg~L~~~i~~-~~~l~~~~~~~~~~qi~~al~yLH~~~  133 (293)
T d1jksa_          60 IEREVSILKEIQ-----HPNVITLHEVYENKTDVILILELVAGGELFDFLAE-KESLTEEEATEFLKQILNGVYYLHSLQ  133 (293)
T ss_dssp             HHHHHHHHHHCC-----CTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC-----CCCCCcEEEEEEECCEEEEEEEcCCCccccchhcc-ccccchhHHHHHHHHHHHHHHhhhhcc
Confidence            455666555542     34332222223445667999999999999987532 2345555444333  224588899999


Q ss_pred             ccccCCCCCcEEEeecC--CCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~--~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      ++|+|+||.||+++..+  ...++++|||++..++.....       ....+++.+++++++..+..++..|++++.-.+
T Consensus       134 ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~~~-------~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvil  206 (293)
T d1jksa_         134 IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEF-------KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVIT  206 (293)
T ss_dssp             EECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTSCBC-------SCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHH
T ss_pred             eeecccccceEEEecCCCcccceEecchhhhhhcCCCccc-------cccCCCCcccCHHHHcCCCCCCcccchhhhHHH
Confidence            99999999999998521  125999999999988654321       113467889999999887788888999999877


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       207 yell  210 (293)
T d1jksa_         207 YILL  210 (293)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6665

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.5e-17  Score=169.21  Aligned_cols=183  Identities=16%  Similarity=0.148  Sum_probs=117.9

Q ss_pred             ccccccceeEEEEEEeC-----CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK-----GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-----G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +.||+|+||+||+|++.     +..||||+.++...+.                                   .      
T Consensus        13 ~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~-----------------------------------~------   51 (273)
T d1mp8a_          13 RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDS-----------------------------------V------   51 (273)
T ss_dssp             EEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHH-----------------------------------H------
T ss_pred             EEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHH-----------------------------------H------
Confidence            68999999999999982     3568888774432211                                   0      


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeecc-CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWEY-TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQI  450 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~-st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi  450 (765)
                      .-.|.+|+..+.++.     +|+|  .++|..+ .+..++||||++|+.+.++.......++...+...+.  ...+..+
T Consensus        52 ~~~~~~E~~~l~~l~-----HpnI--v~l~~~~~~~~~~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~yl  124 (273)
T d1mp8a_          52 REKFLQEALTMRQFD-----HPHI--VKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYL  124 (273)
T ss_dssp             HHHHHHHHHHHHTCC-----CTTB--CCEEEEECSSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-----CCCE--eeEEEEEecCeEEEEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhh
Confidence            113556666665542     3332  2233222 3567999999999999886544444566555544433  3348889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      |..|++|+|+||.||+++.  ++.++++|||++..++......     .....+.+.+++++....+..++.+|++++.-
T Consensus       125 H~~~iiHrDlKp~NIll~~--~~~~Kl~DfG~a~~~~~~~~~~-----~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGv  197 (273)
T d1mp8a_         125 ESKRFVHRDIAARNVLVSS--NDCVKLGDFGLSRYMEDSTYYK-----ASKGKLPIKWMAPESINFRRFTSASDVWMFGV  197 (273)
T ss_dssp             HHTTCCCSCCSGGGEEEEE--TTEEEECC------------------------CCGGGCCHHHHHHCCCSHHHHHHHHHH
T ss_pred             cccCeeccccchhheeecC--CCcEEEccchhheeccCCccee-----ccceecCcccchhhHhccCCCCCccccccchH
Confidence            9999999999999999987  8899999999998876543221     11124567889999998888888889999987


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       198 il~e~l  203 (273)
T d1mp8a_         198 CMWEIL  203 (273)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=9.9e-18  Score=178.03  Aligned_cols=187  Identities=14%  Similarity=0.086  Sum_probs=124.7

Q ss_pred             ccccccceeEEEEEEeC--C-----eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK--G-----EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~--G-----~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||+|+||.||+|++.  +     ..||||+..+.....                                        
T Consensus        43 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~----------------------------------------   82 (325)
T d1rjba_          43 KVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSS----------------------------------------   82 (325)
T ss_dssp             EEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC---------------------------------------------
T ss_pred             eEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHH----------------------------------------
Confidence            68999999999999982  2     379999875432111                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhc--------------------
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDEL--------------------  431 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~--------------------  431 (765)
                       ..-.|.+|.+.+.++.    ++++|.--.-+.......+|||||++|++|.++......                    
T Consensus        83 -~~~~~~~E~~~l~~l~----~HpnIv~l~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  157 (325)
T d1rjba_          83 -EREALMSELKMMTQLG----SHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEED  157 (325)
T ss_dssp             --CHHHHHHHHHHHHHC----CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC------------------
T ss_pred             -HHHHHHHHHHHHHHhc----CCCcEeEEEEEEeeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccc
Confidence             0113455666555542    234332222223445667999999999999987542211                    


Q ss_pred             --CCCHHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHH
Q 004254          432 --GVDRKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDAD  507 (765)
Q Consensus       432 --g~d~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~  507 (765)
                        .++...+...+  +...+..+|+.|++|||+||+||+++.  ++.++|+|||+++..........    ..-..+.+.
T Consensus       158 ~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlKp~Nill~~--~~~~Kl~DFGla~~~~~~~~~~~----~~~~~gt~~  231 (325)
T d1rjba_         158 LNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTH--GKVVKICDFGLARDIMSDSNYVV----RGNARLPVK  231 (325)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEEET--TTEEEECCCGGGSCGGGCTTSEE----ETTEEECGG
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCchhcccccc--CCeEEEeeccccccccCCCceee----eccccCCCc
Confidence              13333333332  334588899999999999999999985  89999999999987655432110    011235678


Q ss_pred             HHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          508 KVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       508 ~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +++++.+..+..++.+|++++.-.+.+++
T Consensus       232 y~aPE~l~~~~~~~~~DiwS~Gvil~eml  260 (325)
T d1rjba_         232 WMAPESLFEGIYTIKSDVWSYGILLWEIF  260 (325)
T ss_dssp             GCCHHHHHHCCCCHHHHHHHHHHHHHHHT
T ss_pred             cCChHHHcCCCCCcceeccchhHHHHHHH
Confidence            99999888888888889999987766554

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.9e-18  Score=175.15  Aligned_cols=194  Identities=14%  Similarity=0.075  Sum_probs=125.6

Q ss_pred             ChhhhhcccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHH
Q 004254          288 PLDDVFERFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYD  365 (765)
Q Consensus       288 ~~eeiF~~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~  365 (765)
                      +.+.-|-.|+. -||+|+||.||+|+.  +|+.||||+....-..                                  +
T Consensus         5 ~~~gry~~~~~-~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~----------------------------------~   49 (270)
T d1t4ha_           5 SNDGRFLKFDI-EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT----------------------------------K   49 (270)
T ss_dssp             CTTSCEEEEEE-EEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC----------------------------------H
T ss_pred             CCCCCEEEeee-EEecCcCcEEEEEEECCCCeEEEEEEEchhhCC----------------------------------H
Confidence            33444444544 599999999999998  5899999987432100                                  0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccC---CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH
Q 004254          366 ECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA  442 (765)
Q Consensus       366 E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s---t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l  442 (765)
                      .-.+      +|.+|++.+.++    .+..-|.+-.++....   ...+|||||++|++|.++... ...++...+...+
T Consensus        50 ~~~~------~~~~E~~il~~l----~HpnIv~~~~~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~-~~~~~~~~~~~~~  118 (270)
T d1t4ha_          50 SERQ------RFKEEAEMLKGL----QHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKR-FKVMKIKVLRSWC  118 (270)
T ss_dssp             HHHH------HHHHHHHHHTTC----CCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHH
T ss_pred             HHHH------HHHHHHHHHHhC----CCCCeeeEEEEEeeccccCCEEEEEEeCCCCCcHHHHHhc-cccccHHHHHHHH
Confidence            0011      345566555443    2222222222222211   224899999999999886532 2234444433322


Q ss_pred             --HHHHHHHHHhCC--ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC
Q 004254          443 --VESYLEQILSHG--FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV  518 (765)
Q Consensus       443 --i~~~L~qi~~~G--ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~  518 (765)
                        +...+..+|..|  ++|+|+||+|||+++ +++.++|+|||++.........        -..+++.++++++..- -
T Consensus       119 ~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~-~~~~~Kl~DFGla~~~~~~~~~--------~~~GT~~Y~aPE~~~~-~  188 (270)
T d1t4ha_         119 RQILKGLQFLHTRTPPIIHRDLKCDNIFITG-PTGSVKIGDLGLATLKRASFAK--------AVIGTPEFMAPEMYEE-K  188 (270)
T ss_dssp             HHHHHHHHHHHTSSSCCCCSCCCGGGEEESS-TTSCEEECCTTGGGGCCTTSBE--------ESCSSCCCCCGGGGGT-C
T ss_pred             HHHHHHHHHHHHCCCCEEeCCcChhhceeeC-CCCCEEEeecCcceeccCCccC--------CcccCccccCHHHhCC-C
Confidence              334477889988  999999999999974 3689999999999866543221        1246788899988764 4


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 004254          519 LVPTGDTTAVRRTAQFFLN  537 (765)
Q Consensus       519 ~~~~~D~~~l~~~~~~~l~  537 (765)
                      .++..|++++.-.+.+++.
T Consensus       189 ~~~~~DIwSlGvilyel~~  207 (270)
T d1t4ha_         189 YDESVDVYAFGMCMLEMAT  207 (270)
T ss_dssp             CCTHHHHHHHHHHHHHHHH
T ss_pred             CCCcCchhhHHHHHHHHHH
Confidence            6778899999987776653

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=9.7e-18  Score=179.60  Aligned_cols=186  Identities=15%  Similarity=0.135  Sum_probs=126.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|++|.||+|+.  +|+.||||+.+....                ...                 +..+      .
T Consensus        11 ~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~----------------~~~-----------------~~~~------~   51 (337)
T d1o6la_          11 KLLGKGTFGKVILVREKATGRYYAMKILRKEVI----------------IAK-----------------DEVA------H   51 (337)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH----------------HHT-----------------TCHH------H
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEchhhc----------------cCH-----------------HHHH------H
Confidence            6899999999999998  699999999832100                000                 0001      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +.+|.+.+.++     ++++|.--.-+.+.....++||||++|+.|.+.... ...++...+....  +-..++.+|..|
T Consensus        52 ~~~E~~il~~l-----~hp~Iv~l~~~~~~~~~~~iv~ey~~gg~L~~~~~~-~~~~~e~~~~~~~~qil~al~ylH~~~  125 (337)
T d1o6la_          52 TVTESRVLQNT-----RHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSR-ERVFTEERARFYGAEIVSALEYLHSRD  125 (337)
T ss_dssp             HHHHHHHHHSC-----CCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC-----CCCCEEEEEeeeccccccccceeccCCCchhhhhhc-ccCCcHHHHHHHHHHHhhhhhhhhhcC
Confidence            34454444433     234332222222334567999999999999886532 2334433332222  334578899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|||+||.|||++.  +|.++|+|||+++.+......      .....+++.+++++++.-...++.+|++++.-.+.+
T Consensus       126 iiHRDlKP~NILl~~--~g~vkl~DFG~a~~~~~~~~~------~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilye  197 (337)
T d1o6la_         126 VVYRDIKLENLMLDK--DGHIKITDFGLCKEGISDGAT------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE  197 (337)
T ss_dssp             CBCCCCCGGGEEECT--TSCEEECCCTTCBCSCCTTCC------BCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHH
T ss_pred             ccccccCHHHeEecC--CCCEEEeecccccccccCCcc------cccceeCHHHhhhhhccCCCCChhhcccchhhHHHH
Confidence            999999999999986  899999999999876543211      111357899999999887777888999999988776


Q ss_pred             HHH
Q 004254          535 FLN  537 (765)
Q Consensus       535 ~l~  537 (765)
                      ++.
T Consensus       198 ml~  200 (337)
T d1o6la_         198 MMC  200 (337)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=3.1e-17  Score=172.03  Aligned_cols=186  Identities=17%  Similarity=0.087  Sum_probs=129.2

Q ss_pred             ccccccceeEEEEEEeC-------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||+|+||.||+|++.       ++.||||+.++...+.                                        
T Consensus        19 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~----------------------------------------   58 (301)
T d1lufa_          19 RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASAD----------------------------------------   58 (301)
T ss_dssp             EEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHH----------------------------------------
T ss_pred             EEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChH----------------------------------------
Confidence            67999999999999873       4789999885433221                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------------
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------------  430 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------------------  430 (765)
                       .+-+|.+|+..+.++     +++++.-..-+.......+++|||+++++|.++.....                     
T Consensus        59 -~~~~~~~E~~il~~l-----~h~niv~~~~~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  132 (301)
T d1lufa_          59 -MQADFQREAALMAEF-----DNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSP  132 (301)
T ss_dssp             -HHHHHHHHHHHHHTC-----CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC--------------------
T ss_pred             -HHHHHHHHHHHHHhc-----CCCCcccceeeeccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhcccc
Confidence             112456666665554     23444433444455667899999999999998653211                     


Q ss_pred             --cCCCHHHHHHH--HHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCH
Q 004254          431 --LGVDRKRLGRY--AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDA  506 (765)
Q Consensus       431 --~g~d~~~ia~~--li~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~  506 (765)
                        ..++...+...  .+...++.+|..|++|+|+||.|||++.  ++.++|+|||+++.+.+......    .....+.+
T Consensus       133 ~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDlKp~NILld~--~~~~Kl~DFGls~~~~~~~~~~~----~~~~~~~~  206 (301)
T d1lufa_         133 GPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGE--NMVVKIADFGLSRNIYSADYYKA----DGNDAIPI  206 (301)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECG--GGCEEECCCSCHHHHTGGGCBC--------CCBCG
T ss_pred             CCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEEcccceEECC--CCcEEEccchhheeccCCccccc----cCCCCcCc
Confidence              11233333222  2334578899999999999999999986  78999999999987765433221    12234567


Q ss_pred             HHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          507 DKVLQAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       507 ~~i~~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      .++++++...+..++..|++++.-.+.+++
T Consensus       207 ~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell  236 (301)
T d1lufa_         207 RWMPPESIFYNRYTTESDVWAYGVVLWEIF  236 (301)
T ss_dssp             GGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHccCCCChhhhhccchhhHHHHH
Confidence            889999999888888899999998776654

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.67  E-value=1.2e-17  Score=174.60  Aligned_cols=189  Identities=15%  Similarity=0.144  Sum_probs=124.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|+||+||+|+.  +|+.||||+.......                              .              .
T Consensus        11 ~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~------------------------------~--------------~   46 (293)
T d1csna_          11 RRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDA------------------------------P--------------Q   46 (293)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEEECCTTS------------------------------C--------------C
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEccccCc------------------------------H--------------H
Confidence            6899999999999998  6999999987332110                              0              1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~~G  454 (765)
                      +..|.+.+..+.    +.+++..-.-+.+.....++||||+ |+.|.++........+.......+.  ...++.+|..|
T Consensus        47 ~~~e~~~~~~l~----~~~~i~~~~~~~~~~~~~~~vme~~-~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~g  121 (293)
T d1csna_          47 LRDEYRTYKLLA----GCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKS  121 (293)
T ss_dssp             HHHHHHHHHHTT----TCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhc----CCCCCCEEEEEeecCCccEEEEEec-CCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCC
Confidence            233444333332    3333333333445566779999999 5677776544334455554443332  34588999999


Q ss_pred             ccccCCCCCcEEEeec---CCCcEEEEeecceeccChhhHHHHHH-HHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          455 FFHADPHPGNIAVDDV---NGGRLIFYDFGMMGSISPNIREGLLE-AFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       455 ffHaDpHPGNILV~~~---~~g~l~LiDFGlv~~L~~~~r~~l~~-l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      ++|||+||+||+++..   +++.++++|||++..+.......... .......+++.+++++.......++..|++++.-
T Consensus       122 iiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~  201 (293)
T d1csna_         122 LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGH  201 (293)
T ss_dssp             EECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHH
T ss_pred             ceeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhH
Confidence            9999999999999741   25789999999998765422110000 0001124678899999887766777789999988


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       202 ~l~ell  207 (293)
T d1csna_         202 VFMYFL  207 (293)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776655

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=9.5e-17  Score=169.64  Aligned_cols=184  Identities=14%  Similarity=0.108  Sum_probs=124.6

Q ss_pred             ccccccceeEEEEEEe--CCe----EEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGE----EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~----~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      +.||+|+||+||+|++  +|+    +||||..++.....                                         
T Consensus        15 ~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~-----------------------------------------   53 (317)
T d1xkka_          15 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK-----------------------------------------   53 (317)
T ss_dssp             EEEEECSSEEEEEEEECC----CCEEEEEEEECC----C-----------------------------------------
T ss_pred             eEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHH-----------------------------------------
Confidence            6899999999999998  454    68888775432111                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHH
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQ  449 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~q  449 (765)
                      .+-.|.+|++.+.+++     +++| .+-.++  .....+++|||+.|+.+.+........++...+...+  +...+..
T Consensus        54 ~~~~~~~E~~~l~~l~-----HpnIv~l~g~~--~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~y  126 (317)
T d1xkka_          54 ANKEILDEAYVMASVD-----NPHVCRLLGIC--LTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNY  126 (317)
T ss_dssp             THHHHHHHHHHHHHCC-----CTTBCCEEEEE--ESSSEEEEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC-----CCCEeeEEEEE--ecCCeeEEEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHH
Confidence            0113556666666542     2332 222222  2456789999999999988655444455655444433  3345888


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVR  529 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~  529 (765)
                      +|..|++|+|+||.||+++.  ++.++|+|||++..+..........    ...+++.+++++...-+..++.+|++++.
T Consensus       127 LH~~~iiHrDlKp~NIll~~--~~~~kl~DFGla~~~~~~~~~~~~~----~~~gt~~y~APE~l~~~~~~~~sDvwS~G  200 (317)
T d1xkka_         127 LEDRRLVHRDLAARNVLVKT--PQHVKITDFGLAKLLGAEEKEYHAE----GGKVPIKWMALESILHRIYTHQSDVWSYG  200 (317)
T ss_dssp             HHHTTCCCSCCCGGGEEEEE--TTEEEECCCSHHHHTTTTCC------------CCTTTSCHHHHHHCCCCHHHHHHHHH
T ss_pred             HHHcCcccCcchhhcceeCC--CCCeEeeccccceeccccccccccc----ccccCccccChHHHhcCCCChhhhhhhHH
Confidence            99999999999999999987  8899999999999876544332221    12357788999988888888889999999


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      -.+.+++
T Consensus       201 vil~el~  207 (317)
T d1xkka_         201 VTVWELM  207 (317)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776654

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.7e-17  Score=166.90  Aligned_cols=178  Identities=15%  Similarity=0.135  Sum_probs=117.7

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +.||.|+||.||+|+++|++||||+.+..-.                                      .+      +|.
T Consensus        13 ~~lG~G~fg~Vy~~~~~~~~vAvK~i~~~~~--------------------------------------~~------~~~   48 (262)
T d1byga_          13 QTIGKGEFGDVMLGDYRGNKVAVKCIKNDAT--------------------------------------AQ------AFL   48 (262)
T ss_dssp             EEEEECSSCEEEEEEETTEEEEEEECCCCC----------------------------------------H------HHH
T ss_pred             EEEecCCCeEEEEEEECCeEEEEEEECcHHH--------------------------------------HH------HHH
Confidence            6799999999999999999999998742110                                      01      234


Q ss_pred             HHHHHHHHHHHhcCCCCccccce-eeeccCCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          379 QEAANAELFASNFKDMDYVKVPT-IFWEYTTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~vP~-vy~e~st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +|++.+.++    . +++|.-.. +..+.....+|||||++|++|.++..... ..++...+...+  +...+..+|..|
T Consensus        49 ~E~~~l~~l----~-HpnIv~~~g~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~  123 (262)
T d1byga_          49 AEASVMTQL----R-HSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN  123 (262)
T ss_dssp             HTHHHHTTC----C-CTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhC----C-CCCEeeEEEEEEecCCcEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCc
Confidence            555544433    2 34332222 22222345689999999999999754322 224444443333  334578899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||.||+++.  ++.++++|||+++..+.....         ...+..+++++...-+..++.+|+++|.-.+.+
T Consensus       124 ivH~dlkp~Nil~~~--~~~~kl~dfg~s~~~~~~~~~---------~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~e  192 (262)
T d1byga_         124 FVHRDLAARNVLVSE--DNVAKVSDFGLTKEASSTQDT---------GKLPVKWTAPEALREKKFSTKSDVWSFGILLWE  192 (262)
T ss_dssp             CCCSCCSGGGEEECT--TSCEEECCCCC---------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             eeccccchHhheecC--CCCEeecccccceecCCCCcc---------ccccccCCChHHHhCCCCChHHHHHhHHHHHHH
Confidence            999999999999986  899999999999877653321         235667888888888888888999999987766


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       193 l~  194 (262)
T d1byga_         193 IY  194 (262)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.2e-16  Score=169.57  Aligned_cols=186  Identities=16%  Similarity=0.134  Sum_probs=126.5

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+++....                .                ++..       .
T Consensus         8 ~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~----------------~----------------~~~~-------~   48 (320)
T d1xjda_           8 KMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLM----------------D----------------DDVE-------C   48 (320)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHH----------------T----------------TCHH-------H
T ss_pred             eEEecCCCcEEEEEEECCCCCEEEEEEEchhhccC----------------h----------------HHHH-------H
Confidence            6899999999999999  69999999984321000                0                0000       1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~G  454 (765)
                      +..|..-+.   ..+ ++|+|.--.-+.+.....+|||||++|++|.++... ....+...+...+  +-..++.+|..|
T Consensus        49 ~~~e~~~l~---~~~-~hp~Iv~~~~~~~~~~~~yivmEy~~~g~L~~~i~~-~~~~~e~~~~~~~~qi~~al~ylH~~~  123 (320)
T d1xjda_          49 TMVEKRVLS---LAW-EHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQS-CHKFDLSRATFYAAEIILGLQFLHSKG  123 (320)
T ss_dssp             HHHHHHHHH---HHT-TCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHH---HhC-CCCcEEEEEEEEccCCceeEEEeecCCCcHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            222222221   122 234333222233445667999999999999987542 2334544443333  334588899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~~~  534 (765)
                      ++|+|+||.|||+++  +++++++|||++..+.......      ....+.+.+++++++..+..++.+|++++.-.+.+
T Consensus       124 iiHrDikp~NiL~~~--~~~~kl~DFG~a~~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilye  195 (320)
T d1xjda_         124 IVYRDLKLDNILLDK--DGHIKIADFGMCKENMLGDAKT------NTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYE  195 (320)
T ss_dssp             CBCCCCCGGGEEECT--TSCEEECCCTTCBCCCCTTCCB------CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHH
T ss_pred             eeeccCcccceeecC--CCceeccccchhhhcccccccc------cccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHH
Confidence            999999999999985  8999999999998765432211      12346788999999988888888999999987776


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       196 ml  197 (320)
T d1xjda_         196 ML  197 (320)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.7e-17  Score=171.93  Aligned_cols=187  Identities=16%  Similarity=0.092  Sum_probs=119.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|+||+||+|+.  +|+.||||+.+.+.....                               -+.+.+      .
T Consensus         4 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~-------------------------------~~~~~~------~   46 (299)
T d1ua2a_           4 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEA-------------------------------KDGINR------T   46 (299)
T ss_dssp             EEEEEETTEEEEEEECSSCCSEEEEEEC-------------------------------------------CT------H
T ss_pred             eEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhh-------------------------------hHHHHH------H
Confidence            4699999999999998  699999998743221110                               001111      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHH--HHHHHHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGR--YAVESYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~--~li~~~L~qi~~~G  454 (765)
                      +.+|+..+.++    . +++|.--.-+....+..+|||||++|..+..+.. ....++...+..  ..+-..++.+|..|
T Consensus        47 ~~~Ei~il~~l----~-hpnIv~~~~~~~~~~~~~ivmE~~~~~~~~~~~~-~~~~l~~~~~~~~~~qil~aL~~lH~~~  120 (299)
T d1ua2a_          47 ALREIKLLQEL----S-HPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKD-NSLVLTPSHIKAYMLMTLQGLEYLHQHW  120 (299)
T ss_dssp             HHHHHHHHHHC----C-CTTBCCEEEEECCTTCCEEEEECCSEEHHHHHTT-CCSSCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CCCEeEEEeeeccCCceeehhhhhcchHHhhhhh-cccCCCHHHHHHHHHHHHHHHHHhhccc
Confidence            34455444443    2 2333222222344566799999999987766542 122233222222  23345688899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|+||+|||++.  ++.++|+|||++..++......      ....+++.+++++++..+ ..+...|++++.-.+.
T Consensus       121 iiHrDiKp~NIli~~--~~~~KL~DFG~a~~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~  192 (299)
T d1ua2a_         121 ILHRDLKPNNLLLDE--NGVLKLADFGLAKSFGSPNRAY------THQVVTRWYRAPELLFGARMYGVGVDMWAVGCILA  192 (299)
T ss_dssp             CCCCCCCGGGEEECT--TCCEEECCCGGGSTTTSCCCCC------CCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHH
T ss_pred             eecccCCcceEEecC--CCccccccCccccccCCCcccc------cceecChhhccHHHHccCCCCChhhhhhhcchHHH
Confidence            999999999999985  8999999999998776543211      011356778888887644 3466779999998776


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       193 el~  195 (299)
T d1ua2a_         193 ELL  195 (299)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=7.5e-17  Score=170.02  Aligned_cols=187  Identities=16%  Similarity=0.108  Sum_probs=130.1

Q ss_pred             ccccccceeEEEEEEe-------CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-------KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-------~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||+|+||.||+|++       +++.||||+.+++....                                        
T Consensus        29 ~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~----------------------------------------   68 (311)
T d1t46a_          29 KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLT----------------------------------------   68 (311)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHH----------------------------------------
T ss_pred             eEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHH----------------------------------------
Confidence            6899999999999986       25789999986643211                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh-----------------cCCC
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE-----------------LGVD  434 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~-----------------~g~d  434 (765)
                       .+..|.+|+..+.++    .++++|.--.-+.+.....+|+|||++|+++.++.....                 ..++
T Consensus        69 -~~~~~~~E~~~~~~l----~~HpnIv~~~g~~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  143 (311)
T d1t46a_          69 -EREALMSELKVLSYL----GNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALD  143 (311)
T ss_dssp             -HHHHHHHHHHHHHHH----CCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCC
T ss_pred             -HHHHHHHHHHHHHhc----cCCCCEEEEEEEEeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCC
Confidence             122456676666655    234544433333333456799999999999988653221                 1233


Q ss_pred             HHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004254          435 RKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  512 (765)
Q Consensus       435 ~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~  512 (765)
                      ...+....  +...++.+|.+|++|+|+||.||+++.  ++.++++|||+++.+........    .....+.+.+++++
T Consensus       144 ~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~NIl~~~--~~~~ki~DfG~~~~~~~~~~~~~----~~~~~gt~~y~aPE  217 (311)
T d1t46a_         144 LEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTH--GRITKICDFGLARDIKNDSNYVV----KGNARLPVKWMAPE  217 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEET--TTEEEECCCGGGSCTTSCTTSEE----CSSSEECGGGCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeecccccccccccc--cCcccccccchheeccCCCcceE----eeecccChHHcCHH
Confidence            33333332  334478899999999999999999985  88999999999987765332111    11234577889999


Q ss_pred             HHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          513 MVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       513 l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      ....+..++..|+++|.-.+.+++
T Consensus       218 ~~~~~~~~~~~DIwS~G~~l~ell  241 (311)
T d1t46a_         218 SIFNCVYTFESDVWSYGIFLWELF  241 (311)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCCcccccchHHHHHHHH
Confidence            998888888899999987766654

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.64  E-value=2.3e-16  Score=166.74  Aligned_cols=177  Identities=16%  Similarity=0.170  Sum_probs=117.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|+||+||+|+.  +|+.||||+.++.-.+                                             +
T Consensus        41 ~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~---------------------------------------------~   75 (328)
T d3bqca1          41 RKLGRGKYSEVFEAINITNNEKVVVKILKPVKKK---------------------------------------------K   75 (328)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSSCHH---------------------------------------------H
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEECHHHHH---------------------------------------------H
Confidence            6899999999999998  6999999998543211                                             1


Q ss_pred             HHHHHHHHHHHHHhcCCCCcc-ccceeeec-cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHHHHh
Q 004254          377 YTQEAANAELFASNFKDMDYV-KVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQILS  452 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e-~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~qi~~  452 (765)
                      +.+|...+..+.    ++++| .+-.++.. .....++||||++|+.|.++..    .++...+...+.  -..+..+|.
T Consensus        76 ~~~Ei~il~~l~----~hpnIv~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~----~l~e~~i~~i~~qil~aL~~LH~  147 (328)
T d3bqca1          76 IKREIKILENLR----GGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ----TLTDYDIRFYMYEILKALDYCHS  147 (328)
T ss_dssp             HHHHHHHHHHHT----TSTTBCCEEEEEECTTTCSEEEEEECCCSCBGGGTTT----SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc----CCCCCcEEEEEEEecCCCceeEEEeecCCCcHHHHhc----CCCHHHHHHHHHHHHHHHHHHhh
Confidence            233444444442    23332 22223322 2345799999999999877531    244444333332  234788999


Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHH
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRT  531 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~~  531 (765)
                      .|++|+|+||+|||++. .++.++++|||++..+.+....       ....++..+++++..... ..+...|++++...
T Consensus       148 ~gIvHrDiKp~NILi~~-~~~~vkl~DFG~a~~~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~  219 (328)
T d3bqca1         148 MGIMHRDVKPHNVMIDH-EHRKLRLIDWGLAEFYHPGQEY-------NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM  219 (328)
T ss_dssp             TTEECCCCSGGGEEEET-TTTEEEECCGGGCEECCTTCCC-------CSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHH
T ss_pred             cccccccccccceEEcC-CCCeeeecccccceeccCCCcc-------cccccCccccCcccccCCCCCCcccchhhhhhh
Confidence            99999999999999985 3457999999999887654321       112345667777776543 24566788888876


Q ss_pred             HHHHH
Q 004254          532 AQFFL  536 (765)
Q Consensus       532 ~~~~l  536 (765)
                      +.+++
T Consensus       220 l~e~~  224 (328)
T d3bqca1         220 LASMI  224 (328)
T ss_dssp             HHHHH
T ss_pred             hHHhc
Confidence            55443

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=1.8e-16  Score=165.34  Aligned_cols=189  Identities=16%  Similarity=0.099  Sum_probs=122.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|+||.||+|+.  +|+.||||+.+......                                            .
T Consensus        13 ~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~--------------------------------------------~   48 (299)
T d1ckia_          13 RKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHP--------------------------------------------Q   48 (299)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEESCTTSC--------------------------------------------C
T ss_pred             EEEeeCCCcEEEEEEECCCCCEEEEEEEchhccCH--------------------------------------------H
Confidence            6799999999999998  59999999874421110                                            1


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +..|++.+..+    .+++.|..-..+.......++||||++|. +.+........++...+...+.+  ..++.+|..|
T Consensus        49 ~~~E~~i~~~l----~~~~~i~~~~~~~~~~~~~~ivme~~~~~-l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~  123 (299)
T d1ckia_          49 LHIESKIYKMM----QGGVGIPTIRWCGAEGDYNVMVMELLGPS-LEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKN  123 (299)
T ss_dssp             HHHHHHHHHHS----TTSTTCCCEEEEEEETTEEEEEEECCCCB-HHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHc----cCCCcccEEEEEEecCCEEEEEEEEcCCc-hhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHCC
Confidence            23344433333    23344444444445556779999999765 44433333344566555554433  3488999999


Q ss_pred             ccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHH-HHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEA-FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTA  532 (765)
Q Consensus       455 ffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l-~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~~~  532 (765)
                      ++|||+||+||++... .+..++++|||++..+........... -.....+++.+++++...-...++..|++++.-.+
T Consensus       124 iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l  203 (299)
T d1ckia_         124 FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVL  203 (299)
T ss_dssp             EECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHH
T ss_pred             eeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHH
Confidence            9999999999998631 245799999999998754321000000 00112467788889888766677778999998776


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       204 ~el~  207 (299)
T d1ckia_         204 MYFN  207 (299)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.5e-16  Score=168.14  Aligned_cols=197  Identities=14%  Similarity=0.102  Sum_probs=128.8

Q ss_pred             hhhhhcccCcccccccceeEEEEEEe-C--C--eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHH
Q 004254          289 LDDVFERFDVEPIAAASLGQVHRARL-K--G--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAI  363 (765)
Q Consensus       289 ~eeiF~~fd~~PIgsaSiGQVhrA~l-~--G--~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i  363 (765)
                      .+.+.-.|+ +.||.|+||.||+|++ +  |  ..||||+.+......                                
T Consensus        24 ~~~~~~~~~-~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~--------------------------------   70 (311)
T d1r0pa_          24 PSSLIVHFN-EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG--------------------------------   70 (311)
T ss_dssp             GGGEEEEEE-EEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHH--------------------------------
T ss_pred             hHHceeccc-eEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHH--------------------------------
Confidence            344433454 5699999999999998 2  2  368999874321110                                


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH
Q 004254          364 YDECASVLYQEIDYTQEAANAELFASNFKDMDYV-KVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA  442 (765)
Q Consensus       364 ~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V-~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l  442 (765)
                               ..-+|.+|++.+.+++     +++| .+-....+.....++||||++|+.+.++........+...+...+
T Consensus        71 ---------~~~~~~~E~~~l~~l~-----HpnIv~~~g~~~~~~~~~~lv~E~~~~g~l~~~~~~~~~~~~~~~~~~i~  136 (311)
T d1r0pa_          71 ---------EVSQFLTEGIIMKDFS-----HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFG  136 (311)
T ss_dssp             ---------HHHHHHHHHHHHHTCC-----CTTBCCCCEEEEETTTEEEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHhCC-----CCCEeEEeEEEEecCCceEEEEEEeecCchhhhhccccccchHHHHHHHH
Confidence                     0114566666665542     2333 222222223346799999999999998765444444444333332


Q ss_pred             --HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004254          443 --VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (765)
Q Consensus       443 --i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~  520 (765)
                        +...+..+|..|++|+|+||.|||++.  ++.++|+|||++..+.........  ...-..+...+++++....+..+
T Consensus       137 ~qia~gL~~lH~~~iiHrDLK~~NILl~~--~~~~kL~DFG~~~~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~  212 (311)
T d1r0pa_         137 LQVAKGMKFLASKKFVHRDLAARNCMLDE--KFTVKVADFGLARDMYDKEFDSVH--NKTGAKLPVKWMALESLQTQKFT  212 (311)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCSGGGEEECT--TCCEEECSSGGGCCTTTTTCCCTT--CTTCSSCCGGGSCHHHHHHCCCC
T ss_pred             HHHHHhhhhhcccCcccCCccHHhEeECC--CCCEEEecccchhhccccccccce--ecccccccccccChHHHhcCCCC
Confidence              223467899999999999999999985  789999999999987654321100  00112356678888888888888


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004254          521 PTGDTTAVRRTAQFFL  536 (765)
Q Consensus       521 ~~~D~~~l~~~~~~~l  536 (765)
                      +.+|+++|.-.+.+++
T Consensus       213 ~ksDI~SfGivl~El~  228 (311)
T d1r0pa_         213 TKSDVWSFGVLLWELM  228 (311)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             ChhHhhhhHHHHHHHH
Confidence            8889999987766554

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.7e-17  Score=170.29  Aligned_cols=185  Identities=16%  Similarity=0.113  Sum_probs=121.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|++|.||+|+.  +|+.||||+.+......                                  +...      .
T Consensus         8 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~----------------------------------~~~~------~   47 (298)
T d1gz8a_           8 EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE----------------------------------GVPS------T   47 (298)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEC-----------------------------------------CCH------H
T ss_pred             cEEecCcCeEEEEEEECCCCCEEEEEEEehhhcCh----------------------------------HHHH------H
Confidence            6799999999999998  69999999884321100                                  0001      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|.+.+.++    . +++|.--.-+....+..++||||++|..+.........+++...+...+.+  ..++.+|+.|
T Consensus        48 ~~~Ei~il~~l----~-Hp~Iv~~~~~~~~~~~~~iv~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~  122 (298)
T d1gz8a_          48 AIREISLLKEL----N-HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR  122 (298)
T ss_dssp             HHHHHHHHTTC----C-CTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC----C-CCcEEEeccccccccceeEEEeecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCC
Confidence            34455444433    2 333322222234456779999999987655543333445665555444433  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~~~~  533 (765)
                      ++|||+||+|||++.  ++.++++|||++...+......      ....+.+.++++++.... ..+..+|++++...+.
T Consensus       123 IiHrDiKpeNIl~~~--~~~~kl~DFG~a~~~~~~~~~~------~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily  194 (298)
T d1gz8a_         123 VLHRDLKPQNLLINT--EGAIKLADFGLARAFGVPVRTY------THEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFA  194 (298)
T ss_dssp             CCCSCCCGGGEEECT--TSCEEECSTTHHHHHCCCSBCT------TCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHH
T ss_pred             EEccccCchheeecc--cCcceeccCCcceeccCCcccc------eeecccceeeehhhhccccCCCccccccccchhhh
Confidence            999999999999985  8899999999997765432110      112456777788876654 3456789999988776


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       195 ~m~  197 (298)
T d1gz8a_         195 EMV  197 (298)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            655

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.8e-17  Score=168.18  Aligned_cols=187  Identities=15%  Similarity=0.090  Sum_probs=123.0

Q ss_pred             ccccccceeEEEEEEeC---------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK---------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECAS  369 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~---------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~  369 (765)
                      +.||+|+||+||+|+..         +..||||+.+++..+.                                      
T Consensus        19 ~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~--------------------------------------   60 (299)
T d1fgka_          19 KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK--------------------------------------   60 (299)
T ss_dssp             EECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHH--------------------------------------
T ss_pred             eEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChH--------------------------------------
Confidence            68999999999999872         2479999987654322                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------------cCCC
Q 004254          370 VLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------------LGVD  434 (765)
Q Consensus       370 ~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------------~g~d  434 (765)
                         ..-++.+|...+.++.    ++++|.--.-+.......++||||++|+.+.++.....               ..++
T Consensus        61 ---~~~~~~~e~~~l~~~~----~HpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~  133 (299)
T d1fgka_          61 ---DLSDLISEMEMMKMIG----KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLS  133 (299)
T ss_dssp             ---HHHHHHHHHHHHHHHC----CCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCC
T ss_pred             ---HHHHHHHHHHHHHHhc----CCCeEEecccccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCC
Confidence               0123455655555542    23443222222233566799999999999999764322               1234


Q ss_pred             HHHHHHHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHH
Q 004254          435 RKRLGRYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQA  512 (765)
Q Consensus       435 ~~~ia~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~  512 (765)
                      ...+....  +...++++|+.|++|||+||.|||++.  ++.++|.|||++..++.......    .....+.+.+++++
T Consensus       134 ~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~NiLl~~--~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~~~y~aPE  207 (299)
T d1fgka_         134 SKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTE--DNVMKIADFGLARDIHHIDYYKK----TTNGRLPVKWMAPE  207 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECT--TCCEEECSTTCCCCGGGCCTTCC----CTTSCCGGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhCCEEeeeecccceeecC--CCCeEeccchhhccccccccccc----cccCCCChhhhhhh
Confidence            44333333  233478899999999999999999986  88999999999997765432211    01123456788888


Q ss_pred             HHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          513 MVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       513 l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      .+..+..++..|+++|.-.+.+++
T Consensus       208 ~l~~~~y~~k~DiwS~Gvvl~ell  231 (299)
T d1fgka_         208 ALFDRIYTHQSDVWSFGVLLWEIF  231 (299)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCchhhhHHhHHHHHHhc
Confidence            888888888899999998776665

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=9.6e-17  Score=169.08  Aligned_cols=186  Identities=16%  Similarity=0.092  Sum_probs=127.3

Q ss_pred             ccccccceeEEEEEEeC-------CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLK-------GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~-------G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      +.||+|+||.||+|+++       ++.||||+.++.....                                        
T Consensus        26 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~----------------------------------------   65 (308)
T d1p4oa_          26 RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR----------------------------------------   65 (308)
T ss_dssp             EEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHH----------------------------------------
T ss_pred             eEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChH----------------------------------------
Confidence            67999999999999873       5789999875432111                                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhh---------cCCCHHHHHHHH
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDE---------LGVDRKRLGRYA  442 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~---------~g~d~~~ia~~l  442 (765)
                       .+..|.+|+..+.++     ++++|.-..-+.......++||||++|++|.++.....         ...+...+...+
T Consensus        66 -~~~~~~~E~~il~~l-----~h~nIv~~~~~~~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  139 (308)
T d1p4oa_          66 -ERIEFLNEASVMKEF-----NCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMA  139 (308)
T ss_dssp             -HHHHHHHHHHHGGGC-----CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHc-----CCCCEeeeeeEEecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHH
Confidence             123456666655544     23443333333344567899999999999988653221         112333343332


Q ss_pred             --HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCC
Q 004254          443 --VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLV  520 (765)
Q Consensus       443 --i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~  520 (765)
                        +...+..+|..+++|+|+||.|||++.  +++++|+|||++..+........    ..-..+.+.+++++....+..+
T Consensus       140 ~~ia~gl~~LH~~~ivHrDlk~~NiLld~--~~~~Kl~DFGla~~~~~~~~~~~----~~~~~~t~~y~aPe~l~~~~~~  213 (308)
T d1p4oa_         140 GEIADGMAYLNANKFVHRDLAARNCMVAE--DFTVKIGDFGMTRDIYETDYYRK----GGKGLLPVRWMSPESLKDGVFT  213 (308)
T ss_dssp             HHHHHHHHHHHHTTCBCSCCSGGGEEECT--TCCEEECCTTCCCGGGGGGCEEG----GGSSEECGGGCCHHHHHHCCCC
T ss_pred             HHHHHHHHHHhhCCeeeceEcCCceeecC--CceEEEeecccceeccCCcceee----ccceecccccCCHHHHccCCCC
Confidence              334588899999999999999999985  88999999999987755432111    1112356888999998888888


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004254          521 PTGDTTAVRRTAQFFL  536 (765)
Q Consensus       521 ~~~D~~~l~~~~~~~l  536 (765)
                      +..|++++.-.+.+++
T Consensus       214 ~~~Dv~S~G~il~El~  229 (308)
T d1p4oa_         214 TYSDVWSFGVVLWEIA  229 (308)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHH
Confidence            8889999987766554

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.1e-16  Score=165.97  Aligned_cols=187  Identities=19%  Similarity=0.182  Sum_probs=119.4

Q ss_pred             ccccccceeEEEEEEe---CC--eEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL---KG--EEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQ  373 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l---~G--~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~  373 (765)
                      +-||+|+||+||+|++   ++  .+||||+..+.....                                 ++.      
T Consensus        14 ~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~---------------------------------~~~------   54 (273)
T d1u46a_          14 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQ---------------------------------PEA------   54 (273)
T ss_dssp             EECC----CCCEEEEEECTTSCEEEEEEEC-----------------------------------------CHH------
T ss_pred             EEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCC---------------------------------HHH------
Confidence            4699999999999997   23  479999874432111                                 000      


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccceeeec-cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHH
Q 004254          374 EIDYTQEAANAELFASNFKDMDYVKVPTIFWE-YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQI  450 (765)
Q Consensus       374 ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e-~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi  450 (765)
                      .-+|.+|++.+.+++     +++|  .+.|.- .....++||||++++.+.+........++...+...+.+  ..+..+
T Consensus        55 ~~~~~~Ei~~l~~l~-----H~nI--v~~~g~~~~~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~yl  127 (273)
T d1u46a_          55 MDDFIREVNAMHSLD-----HRNL--IRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYL  127 (273)
T ss_dssp             HHHHHHHHHHHHHCC-----CTTB--CCEEEEECSSSCEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-----CCCE--EEEEEEEeecchheeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHh
Confidence            114666776666552     2332  233321 234569999999999998866544445666665554443  448889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRR  530 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l~~  530 (765)
                      |..|++|+|+||.||+++.  ++.++++|||++..+.........   .....+...++++++..-+..++.+|+++|.-
T Consensus       128 H~~~iiHrDikp~NIll~~--~~~vkl~DfGl~~~~~~~~~~~~~---~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gv  202 (273)
T d1u46a_         128 ESKRFIHRDLAARNLLLAT--RDLVKIGDFGLMRALPQNDDHYVM---QEHRKVPFAWCAPESLKTRTFSHASDTWMFGV  202 (273)
T ss_dssp             HHTTEECSCCCGGGEEEEE--TTEEEECCCTTCEECCC-CCEEEC--------CCGGGCCHHHHHHCEEEHHHHHHHHHH
T ss_pred             hhCCEeeeeecHHHhcccc--ccceeeccchhhhhcccCCCccee---cCccccCcccCCHHHHhCCCCCcchhhhhhHH
Confidence            9999999999999999997  889999999999987554321110   11122355677888888887788889999988


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       203 il~eml  208 (273)
T d1u46a_         203 TLWEMF  208 (273)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.4e-17  Score=174.93  Aligned_cols=187  Identities=11%  Similarity=0.077  Sum_probs=121.8

Q ss_pred             hhcccC--cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004254          292 VFERFD--VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (765)
Q Consensus       292 iF~~fd--~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (765)
                      +.+.|.  .+.||+|+||.||+|+.  +|+.||||+.+..  +                                     
T Consensus         9 i~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~--~-------------------------------------   49 (335)
T d2ozaa1           9 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC--P-------------------------------------   49 (335)
T ss_dssp             GGGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS--H-------------------------------------
T ss_pred             cccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc--H-------------------------------------
Confidence            444454  25799999999999998  6999999987321  0                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCc-cccceeeecc---CCCeEEEEeecCCCChhhhhhhhh-cCCCHHHHHHHH
Q 004254          368 ASVLYQEIDYTQEAANAELFASNFKDMDY-VKVPTIFWEY---TTPQILTMEYVPGIKINRIQSLDE-LGVDRKRLGRYA  442 (765)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~-V~vP~vy~e~---st~~vLVMEyieG~~L~d~~~l~~-~g~d~~~ia~~l  442 (765)
                              .+.+|...+.++.    ++++ |.+-.+|...   ....+||||||+|++|.++..... ..++...+...+
T Consensus        50 --------~~~~E~~~~~~~~----~hpnIv~l~~~~~~~~~~~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~  117 (335)
T d2ozaa1          50 --------KARREVELHWRAS----QCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIM  117 (335)
T ss_dssp             --------HHHHHHHHHHHHT----TSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHH
T ss_pred             --------HHHHHHHHHHHhc----CCCCCCeEEEEEeecccCCCEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHH
Confidence                    0122333332221    2333 3333333221   234599999999999998754321 234444433333


Q ss_pred             H--HHHHHHHHhCCccccCCCCCcEEEeec-CCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC
Q 004254          443 V--ESYLEQILSHGFFHADPHPGNIAVDDV-NGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL  519 (765)
Q Consensus       443 i--~~~L~qi~~~GffHaDpHPGNILV~~~-~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~  519 (765)
                      .  -..+..+|..|++|||+||+||+++.. +++.++|+|||++..+......       ....+++.++++++......
T Consensus       118 ~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~y  190 (335)
T d2ozaa1         118 KSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL-------TTPCYTPYYVAPEVLGPEKY  190 (335)
T ss_dssp             HHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCCC-------CCCSCCCSSCCCCCCCGGGG
T ss_pred             HHHHHHHHHHHHcCCccccccccccccccccccccccccccceeeeccCCCcc-------ccccCCcccCCcHHHcCCCC
Confidence            2  234788999999999999999999852 2467999999999877654321       11246777788877665556


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 004254          520 VPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       520 ~~~~D~~~l~~~~~~~l  536 (765)
                      ++..|++++.-.+.+++
T Consensus       191 ~~~~DiwSlGvily~ll  207 (335)
T d2ozaa1         191 DKSCDMWSLGVIMYILL  207 (335)
T ss_dssp             SHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHhhchhHHHHh
Confidence            66779999987766554

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.8e-16  Score=164.00  Aligned_cols=187  Identities=20%  Similarity=0.174  Sum_probs=124.5

Q ss_pred             ccccccceeEEEEEEe--C-CeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--K-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEI  375 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~-G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~El  375 (765)
                      +.||+|+||.||+|+.  + |+.||||+.+....+.                       .   ..              .
T Consensus        13 ~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~-----------------------~---~~--------------~   52 (305)
T d1blxa_          13 AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE-----------------------G---MP--------------L   52 (305)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTT-----------------------S---CB--------------C
T ss_pred             EEEecccCeEEEEEEEECCCCEEEEEEEEehhhccc-----------------------h---HH--------------H
Confidence            5799999999999997  3 6789999885432211                       0   00              0


Q ss_pred             HHHHHHHHHHHHHHhcCCCCc-cccceeee----ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHH
Q 004254          376 DYTQEAANAELFASNFKDMDY-VKVPTIFW----EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLE  448 (765)
Q Consensus       376 Df~~EA~Nl~rf~~~f~~~~~-V~vP~vy~----e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~  448 (765)
                      .+.+|...+..+.. + ++++ |.+-.++.    +.....+++|||++|+.+.........+.+...+...+  +-..++
T Consensus        53 ~~~~E~~~l~~l~~-~-~HpnIv~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~  130 (305)
T d1blxa_          53 STIREVAVLRHLET-F-EHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLD  130 (305)
T ss_dssp             THHHHHHHHHHHHH-T-CCTTBCCEEEEEEEEECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh-c-CCCCcceeeeeecccccccCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHH
Confidence            12233333333322 1 2222 22222221    12235699999999987765544444455555443333  234578


Q ss_pred             HHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCCHHHH
Q 004254          449 QILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAV  528 (765)
Q Consensus       449 qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~D~~~l  528 (765)
                      .+|.+|++|||+||.|||++.  ++.++++|||++.........       ....+++.+++|++..-...++..|++++
T Consensus       131 yLH~~~ivHrDiKp~NILi~~--~~~~kl~dfg~~~~~~~~~~~-------~~~~gT~~Y~APE~~~~~~y~~~~DiwSl  201 (305)
T d1blxa_         131 FLHSHRVVHRDLKPQNILVTS--SGQIKLADFGLARIYSFQMAL-------TSVVVTLWYRAPEVLLQSSYATPVDLWSV  201 (305)
T ss_dssp             HHHHTTCCCCCCCGGGEEECT--TCCEEECSCCSCCCCCGGGGG-------CCCCCCCTTCCHHHHTTCCCCTHHHHHHH
T ss_pred             HHHhCCEEecCCCccEEEEcC--CCCeeecchhhhhhhcccccC-------CCcccChhhcCcchhcCCCCChhehhhch
Confidence            899999999999999999985  789999999998877654321       22357888999999887777888899999


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      .-.+.+++
T Consensus       202 G~il~ell  209 (305)
T d1blxa_         202 GCIFAEMF  209 (305)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98776665

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2e-16  Score=166.62  Aligned_cols=184  Identities=16%  Similarity=0.142  Sum_probs=122.1

Q ss_pred             ccccccceeEEEEEEe--CCe--EEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGE--EVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQE  374 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~--~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~E  374 (765)
                      +.||.|+||.||+|++  +|.  .||||..+....+.                                         ..
T Consensus        16 ~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~-----------------------------------------~~   54 (309)
T d1fvra_          16 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD-----------------------------------------DH   54 (309)
T ss_dssp             EEEECGGGCEEEEEEEEETTEEEEEEEEEEECC-----------------------------------------------
T ss_pred             EEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChH-----------------------------------------HH
Confidence            6899999999999999  465  46777653322111                                         01


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhh---------------hcCCCHHHHH
Q 004254          375 IDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLD---------------ELGVDRKRLG  439 (765)
Q Consensus       375 lDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~---------------~~g~d~~~ia  439 (765)
                      -+|.+|++.+.++.    ++++|.--.-+....+..++||||++|++|.++....               ...++...+.
T Consensus        55 ~~~~~E~~~l~~l~----~HpnIv~~~~~~~~~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~  130 (309)
T d1fvra_          55 RDFAGELEVLCKLG----HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLL  130 (309)
T ss_dssp             CHHHHHHHHHTTCC----CCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHH
T ss_pred             HHHHHHHHHHHhcc----CCCCEeeEEEEEecCCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHH
Confidence            14566666555432    2343322222233456679999999999999975321               1234444333


Q ss_pred             HHH--HHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC
Q 004254          440 RYA--VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG  517 (765)
Q Consensus       440 ~~l--i~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG  517 (765)
                      ...  +...++.+|..|++|+|+||.|||++.  ++.++|+|||++...........       ..+...+++++.+.-+
T Consensus       131 ~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~--~~~~kl~DfG~a~~~~~~~~~~~-------~~gt~~y~aPE~l~~~  201 (309)
T d1fvra_         131 HFAADVARGMDYLSQKQFIHRDLAARNILVGE--NYVAKIADFGLSRGQEVYVKKTM-------GRLPVRWMAIESLNYS  201 (309)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCSGGGEEECG--GGCEEECCTTCEESSCEECCC-----------CCTTTCCHHHHHHC
T ss_pred             HHHHHHHHHHHhhhcCCccccccccceEEEcC--CCceEEccccccccccccccccc-------eecCCcccchHHhccC
Confidence            333  233478899999999999999999986  78999999999987765433211       2345667778888778


Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q 004254          518 VLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       518 ~~~~~~D~~~l~~~~~~~l  536 (765)
                      ..++..|+++|.-.+.+++
T Consensus       202 ~~~~~sDvwSfGvil~ell  220 (309)
T d1fvra_         202 VYTTNSDVWSYGVLLWEIV  220 (309)
T ss_dssp             EECHHHHHHHHHHHHHHHH
T ss_pred             CCCccceeehhHHHHHHHH
Confidence            7888889999998776654

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.6e-17  Score=169.39  Aligned_cols=189  Identities=12%  Similarity=0.094  Sum_probs=121.8

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|+||.||+|+.  +|+.||||+.+.......                      ....+.              ..
T Consensus        10 ~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~----------------------~~~~~~--------------~~   53 (273)
T d1xwsa_          10 PLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDW----------------------GELPNG--------------TR   53 (273)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCE----------------------EECTTC--------------CE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccch----------------------hhhhHH--------------HH
Confidence            6799999999999998  699999998754321100                      000000              01


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCC-ChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGI-KINRIQSLDELGVDRKRLGRYAVE--SYLEQILSH  453 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~-~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~  453 (765)
                      +.+|...+.++..   .+++|.--.-+.+.....++||||++|. .+.++.. ....++...+...+.+  ..+..+|..
T Consensus        54 ~~~E~~il~~l~~---~h~nIv~~~~~~~~~~~~~lv~e~~~~~~~l~~~~~-~~~~l~e~~~~~~~~qi~~al~~lH~~  129 (273)
T d1xwsa_          54 VPMEVVLLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFIT-ERGALQEELARSFFWQVLEAVRHCHNC  129 (273)
T ss_dssp             EEHHHHHHHHHCS---SSCSBCCEEEEEECSSEEEEEEECCSSEEEHHHHHH-HHCSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcc---CCCCccEEEEEEeeCCeEEEEEEeccCcchHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            2345555555432   2333322222223455679999999874 5545432 2334555544433332  347889999


Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCC-CCCCCHHHHHHHH
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVL-VPTGDTTAVRRTA  532 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~-~~~~D~~~l~~~~  532 (765)
                      |++|||+||+||+++. +++.++|+|||++.........        -..+++.++++++..-+.. +...|++++.-.+
T Consensus       130 ~iiHrDiKp~NIll~~-~~~~vkl~DFG~a~~~~~~~~~--------~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvil  200 (273)
T d1xwsa_         130 GVLHRDIKDENILIDL-NRGELKLIDFGSGALLKDTVYT--------DFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILL  200 (273)
T ss_dssp             TEECSCCSGGGEEEET-TTTEEEECCCTTCEECCSSCBC--------CCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHH
T ss_pred             CCccccCcccceEEec-CCCeEEECccccceeccccccc--------ccccCCCcCCHHHHcCCCCCCcccccccceeee
Confidence            9999999999999984 3579999999999877654321        1347888999998875543 4457999998877


Q ss_pred             HHHH
Q 004254          533 QFFL  536 (765)
Q Consensus       533 ~~~l  536 (765)
                      .+++
T Consensus       201 yell  204 (273)
T d1xwsa_         201 YDMV  204 (273)
T ss_dssp             HHHH
T ss_pred             hhHh
Confidence            6665

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.60  E-value=4.7e-16  Score=161.20  Aligned_cols=184  Identities=15%  Similarity=0.078  Sum_probs=121.2

Q ss_pred             ccccccceeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDY  377 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf  377 (765)
                      +.||+|+||.||+|+. +|+.||||+.+......                           +.             +-.+
T Consensus         8 ~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~---------------------------~~-------------~~~~   47 (286)
T d1ob3a_           8 EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDE---------------------------GI-------------PSTT   47 (286)
T ss_dssp             EEEEEETTEEEEEEEETTSCEEEEEEECCSSGGG---------------------------CC-------------CHHH
T ss_pred             cEEecCCCcEEEEEEeCCCCEEEEEEEehhhcCh---------------------------HH-------------HHHH
Confidence            6899999999999999 79999999874432111                           00             0134


Q ss_pred             HHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHHHhCCc
Q 004254          378 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQILSHGF  455 (765)
Q Consensus       378 ~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi~~~Gf  455 (765)
                      .+|...+.++     ++++|.--.-+....+..+++|||+.|..+..+.. ....++...+...+  +-..++.+|+.|+
T Consensus        48 ~~E~~il~~l-----~hpnIv~~~~~~~~~~~~~i~~e~~~~~~~~~~~~-~~~~l~~~~~~~i~~qi~~~L~~LH~~~I  121 (286)
T d1ob3a_          48 IREISILKEL-----KHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDV-CEGGLESVTAKSFLLQLLNGIAYCHDRRV  121 (286)
T ss_dssp             HHHHHGGGGC-----CCTTBCCEEEEEECSSCEEEEEECCSEEHHHHHHT-STTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhC-----CCCcEEeeeeecccCCceeEEEEeehhhhHHHHHh-hcCCcchhhhHHHHHHHHHHHHHhccCcE
Confidence            4565555444     23333322333345667899999999987766543 23345554444333  2345889999999


Q ss_pred             cccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHHH
Q 004254          456 FHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQF  534 (765)
Q Consensus       456 fHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~~~  534 (765)
                      +|+|+||.|||++.  ++.++++|||.+..++.......      ...+.+.+++++.... ...++..|++++...+.+
T Consensus       122 vHrDiKp~NIll~~--~~~~kl~DfG~a~~~~~~~~~~~------~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~e  193 (286)
T d1ob3a_         122 LHRDLKPQNLLINR--EGELKIADFGLARAFGIPVRKYT------HEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAE  193 (286)
T ss_dssp             CCSCCCGGGEEECT--TSCEEECCTTHHHHHCC---------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHH
T ss_pred             EecCCCCceeeEcC--CCCEEecccccceecccCccccc------eecccchhhhHHHHhCCCCCCcceeehhcCcHHHH
Confidence            99999999999986  89999999999988765432111      1124556667776643 445677899999887766


Q ss_pred             HH
Q 004254          535 FL  536 (765)
Q Consensus       535 ~l  536 (765)
                      ++
T Consensus       194 l~  195 (286)
T d1ob3a_         194 MV  195 (286)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.2e-16  Score=166.05  Aligned_cols=184  Identities=16%  Similarity=0.134  Sum_probs=113.5

Q ss_pred             ccccccceeEEEEEEeCCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARLKGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT  378 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~  378 (765)
                      +.||.|+||+||+|+++|+.||||+.+..-.+.                                       ...|    
T Consensus         9 ~~iG~G~fg~Vy~~~~~g~~vAvK~~~~~~~~~---------------------------------------~~~e----   45 (303)
T d1vjya_           9 ESIGKGRFGEVWRGKWRGEEVAVKIFSSREERS---------------------------------------WFRE----   45 (303)
T ss_dssp             EEEECCSSSEEEEEEETTEEEEEEEECGGGHHH---------------------------------------HHHH----
T ss_pred             EEEeeCCCeEEEEEEECCEEEEEEEECccchhH---------------------------------------HHHH----
Confidence            569999999999999999999999874321100                                       0011    


Q ss_pred             HHHHHHHHHHHhcCCCCccc-cceeeeccC---CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHh
Q 004254          379 QEAANAELFASNFKDMDYVK-VPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILS  452 (765)
Q Consensus       379 ~EA~Nl~rf~~~f~~~~~V~-vP~vy~e~s---t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~  452 (765)
                      .|...+..    + ++++|. +-.+..+..   ...+|||||+++++|.++..  ....+.........+  ..+..+|.
T Consensus        46 ~ei~~~~~----~-~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~--~~~l~~~~~~~~~~~ia~gl~~lH~  118 (303)
T d1vjya_          46 AEIYQTVM----L-RHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLN--RYTVTVEGMIKLALSTASGLAHLHM  118 (303)
T ss_dssp             HHHHTSTT----C-CCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHH--HCCBCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhh----C-CCCcCcceEEEEEeCCCcceEEEEEEecccCCCHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            12221111    1 233332 111111111   23589999999999999764  334554444333333  33555664


Q ss_pred             --------CCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCC------
Q 004254          453 --------HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGV------  518 (765)
Q Consensus       453 --------~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~------  518 (765)
                              .|++|+|+||+|||+++  ++.++|+|||++..+.......  .....-..+++.++++++..-..      
T Consensus       119 ~~~~~~~~~~IvHrDlKp~NILl~~--~~~~Kl~DFGl~~~~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~  194 (303)
T d1vjya_         119 EIVGTQGKPAIAHRDLKSKNILVKK--NGTCCIADLGLAVRHDSATDTI--DIAPNHRVGTKRYMAPEVLDDSINMKHFE  194 (303)
T ss_dssp             CBCSTTCBCEEECSCCCGGGEEECT--TSCEEECCCTTCEEEETTTTEE--CC----CCSCGGGCCHHHHTTCSCTTCHH
T ss_pred             hhhhhccCCCeeccccCccceEEcC--CCCeEEEecCccccccCCCcce--eccccceecccCcCChhhccccccccCCC
Confidence                    69999999999999986  8999999999998775432110  00011234678889998876432      


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 004254          519 LVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       519 ~~~~~D~~~l~~~~~~~l  536 (765)
                      .+...|+++|.-.+.+++
T Consensus       195 ~~~k~Di~S~Gvvl~el~  212 (303)
T d1vjya_         195 SFKRADIYAMGLVFWEIA  212 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             cCcchhhhhhHHHHHHHh
Confidence            233468888887776654

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.5e-15  Score=161.69  Aligned_cols=180  Identities=18%  Similarity=0.211  Sum_probs=115.0

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      ++||.|+||.||+|+.  +|+.||||+.+......                                  ...+.      
T Consensus        24 ~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~----------------------------------~~~~~------   63 (346)
T d1cm8a_          24 QPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSE----------------------------------LFAKR------   63 (346)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEECSSTTSSH----------------------------------HHHHH------
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEchhhcCh----------------------------------HHHHH------
Confidence            6899999999999998  59999999985432111                                  11122      


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc-----CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHH--HHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY-----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV--ESYLEQ  449 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~-----st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li--~~~L~q  449 (765)
                      +.+|.+.+..+    .+..-|.+-.++...     ....+|||||+ |..+.++..  ...++...+...+.  -..+..
T Consensus        64 ~~~Ei~il~~l----~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~--~~~l~~~~~~~~~~qi~~aL~~  136 (346)
T d1cm8a_          64 AYRELRLLKHM----RHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMK--HEKLGEDRIQFLVYQMLKGLRY  136 (346)
T ss_dssp             HHHHHHHHHHC----CBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHH--HCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCeeEEEEEeccCccccccceEEEEEecc-cccHHHHHH--hccccHHHHHHHHHHHHHHHHH
Confidence            23344444443    222223333333221     22459999999 556666542  33455555443333  344788


Q ss_pred             HHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHH
Q 004254          450 ILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAV  528 (765)
Q Consensus       450 i~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l  528 (765)
                      +|..|++|+|+||+|||++.  ++.++++|||++...+....         ...+++.+++++.+.- ...+...|++++
T Consensus       137 LH~~~IiHrDiKp~NIL~~~--~~~~kl~Dfg~a~~~~~~~~---------~~~~t~~y~aPE~~~~~~~~~~~~DiwSl  205 (346)
T d1cm8a_         137 IHAAGIIHRDLKPGNLAVNE--DCELKILDFGLARQADSEMT---------GYVVTRWYRAPEVILNWMRYTQTVDIWSV  205 (346)
T ss_dssp             HHHTTEECCCCCGGGEEECT--TCCEEECCCTTCEECCSSCC---------SSCSCGGGCCTHHHHTTTCCCTTHHHHHH
T ss_pred             HHhCCCcccccCcchhhccc--ccccccccccceeccCCccc---------cccccccccCHHHHcCCCCCCccchhhcc
Confidence            99999999999999999986  89999999999998876532         1246677788887653 455678899999


Q ss_pred             HHHHHHHH
Q 004254          529 RRTAQFFL  536 (765)
Q Consensus       529 ~~~~~~~l  536 (765)
                      ...+.+++
T Consensus       206 Gvil~ell  213 (346)
T d1cm8a_         206 GCIMAEMI  213 (346)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            98776654

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1e-15  Score=163.35  Aligned_cols=186  Identities=16%  Similarity=0.137  Sum_probs=120.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|+||+||+|+.  +|+.||||+.++.-.+.                                   ..+      .
T Consensus        14 ~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~-----------------------------------~~~------~   52 (345)
T d1pmea_          14 SYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQT-----------------------------------YCQ------R   52 (345)
T ss_dssp             EECC---CCCEEEEEETTTCSEEEEEEECCTTCHH-----------------------------------HHH------H
T ss_pred             EEEeeccCeEEEEEEECCCCcEEEEEEEehhcChH-----------------------------------HHH------H
Confidence            6899999999999998  69999999885421110                                   011      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC---CCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT---TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQIL  451 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s---t~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~  451 (765)
                      +.+|...+..+.    +..-+.+..++...+   ...+++|+|+.|++|.++..  ..+++...+...+.+  ..++.+|
T Consensus        53 ~~~Ei~il~~l~----hp~iv~~~~~~~~~~~~~~~~~~l~~~~~~g~L~~~l~--~~~l~~~~i~~i~~qil~al~yLH  126 (345)
T d1pmea_          53 TLREIKILLRFR----HENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLK--TQHLSNDHICYFLYQILRGLKYIH  126 (345)
T ss_dssp             HHHHHHHHHHCC----CTTBCCCCEEECCSSTTTCCCEEEEEECCCEEHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC----CCCCCcEEEEEeeccccccceEEEEEeecCCchhhhhh--cCCCCHHHHHHHHHHHHHHHHHHH
Confidence            345555555542    323334444443222   23466677788999998754  335665555444433  3488899


Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCCCCCCHHHHHH
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLVPTGDTTAVRR  530 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~~~~D~~~l~~  530 (765)
                      +.|++|||+||+|||++.  ++.++|+|||++...........   ......+.+.+++++++..+ ...+..|++++.-
T Consensus       127 ~~~iiHRDIKp~NILl~~--~~~~kl~DfG~a~~~~~~~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~  201 (345)
T d1pmea_         127 SANVLHRDLKPSNLLLNT--TCDLKICDFGLARVADPDHDHTG---FLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC  201 (345)
T ss_dssp             HTTEECCCCCGGGEEECT--TCCEEECCCTTCEECCGGGCBCC---TTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHH
T ss_pred             HCCCcCCCCCcceEEECC--CCCEEEcccCceeeccCCCccce---eeccccccceechHHHhhcCCCCCchhhhhccCc
Confidence            999999999999999985  88999999999988766432110   00112356677888876544 3456679999988


Q ss_pred             HHHHHH
Q 004254          531 TAQFFL  536 (765)
Q Consensus       531 ~~~~~l  536 (765)
                      .+.+++
T Consensus       202 il~eml  207 (345)
T d1pmea_         202 ILAEML  207 (345)
T ss_dssp             HHHHHH
T ss_pred             eehHHh
Confidence            776655

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.1e-15  Score=158.45  Aligned_cols=184  Identities=18%  Similarity=0.181  Sum_probs=113.5

Q ss_pred             ccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH
Q 004254          295 RFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVL  371 (765)
Q Consensus       295 ~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l  371 (765)
                      .|+. +.||.|+||.||+|+.  +|+.||||+.+......                                  +..   
T Consensus        18 ~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~----------------------------------~~~---   60 (355)
T d2b1pa1          18 RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQ----------------------------------THA---   60 (355)
T ss_dssp             TEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSH----------------------------------HHH---
T ss_pred             CeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCH----------------------------------HHH---
Confidence            4543 7999999999999998  59999999985432211                                  000   


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCc-cccceeee-----ccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--H
Q 004254          372 YQEIDYTQEAANAELFASNFKDMDY-VKVPTIFW-----EYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--V  443 (765)
Q Consensus       372 ~~ElDf~~EA~Nl~rf~~~f~~~~~-V~vP~vy~-----e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i  443 (765)
                         ..+.+|...+.++    .+ ++ |..-.++.     +..+..++||||+.|..+..+.    ..++...+...+  +
T Consensus        61 ---~~~~~Ei~il~~l----~h-pnIv~~~~~f~~~~~~~~~~~~~iv~Ey~~~~l~~~~~----~~~~~~~i~~~~~qi  128 (355)
T d2b1pa1          61 ---KRAYRELVLMKCV----NH-KNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYLLYQM  128 (355)
T ss_dssp             ---HHHHHHHHHHHHC----CC-TTBCCCSEEECSCCSTTTCCEEEEEEECCSEEHHHHHT----SCCCHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHhc----CC-CCeeEEEEEEecccccccCceeEEEEeccchHHHHhhh----cCCCHHHHHHHHHHH
Confidence               1233444444443    22 33 22223332     2235669999999987666542    234444444333  3


Q ss_pred             HHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcCCCCCCC
Q 004254          444 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTG  523 (765)
Q Consensus       444 ~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG~~~~~~  523 (765)
                      -..+..+|..|++|+|+||.|||++.  ++.++++|||+....+......       ...+...+++++.+.-....+..
T Consensus       129 l~gl~~LH~~giiHrDlKP~Nil~~~--~~~~kl~df~~~~~~~~~~~~~-------~~~~t~~y~aPE~l~~~~~~~~~  199 (355)
T d2b1pa1         129 LCGIKHLHSAGIIHRDLKPSNIVVKS--DCTLKILDFGLARTAGTSFMMT-------PYVVTRYYRAPEVILGMGYKENV  199 (355)
T ss_dssp             HHHHHHHHHTTCCCSCCCGGGEEECT--TCCEEECCCCC----------------------CCTTCCHHHHTTCCCCTTH
T ss_pred             HHHHHHhhhcccccccCCcccccccc--ccceeeechhhhhccccccccc-------cccccccccChhhhcCCCCCCCc
Confidence            34578899999999999999999985  8899999999988776644322       12345667777877666667788


Q ss_pred             CHHHHHHHHHHHH
Q 004254          524 DTTAVRRTAQFFL  536 (765)
Q Consensus       524 D~~~l~~~~~~~l  536 (765)
                      |++++...+..++
T Consensus       200 DiwSlG~~l~ell  212 (355)
T d2b1pa1         200 DIWSVGCIMGEMV  212 (355)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             ccccccchHHHHh
Confidence            9999987766554

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.7e-15  Score=160.38  Aligned_cols=180  Identities=19%  Similarity=0.181  Sum_probs=114.3

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||.|+||.||+|+.  +|+.||||+.+.+-..                                              
T Consensus        26 k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~----------------------------------------------   59 (350)
T d1q5ka_          26 KVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF----------------------------------------------   59 (350)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCSSS----------------------------------------------
T ss_pred             eEEeeCcCeEEEEEEECCCCCEEEEEEECccchH----------------------------------------------
Confidence            6799999999999999  6999999987443110                                              


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccC-----CCeEEEEeecCCCChhhhhhh--hhcCCCHHHHHHHH--HHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYT-----TPQILTMEYVPGIKINRIQSL--DELGVDRKRLGRYA--VESYL  447 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~s-----t~~vLVMEyieG~~L~d~~~l--~~~g~d~~~ia~~l--i~~~L  447 (765)
                      +.+|.+.+.++    .+..-|.+..++....     ...+|||||++|.....+...  ....++...+...+  +-..+
T Consensus        60 ~~~Ei~il~~l----~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL  135 (350)
T d1q5ka_          60 KNRELQIMRKL----DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSL  135 (350)
T ss_dssp             CCHHHHHHHHC----CCTTBCCEEEEEEEC--CCSCCEEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCCCcEEEEEEecCccCCceEEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHH
Confidence            01233333333    2322233333332211     124899999998755554332  12234444433322  33458


Q ss_pred             HHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHH
Q 004254          448 EQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTT  526 (765)
Q Consensus       448 ~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~  526 (765)
                      +.+|..|++|||+||+|||++. ++..++|+|||++..+.......       -..+...+++++.... ....+..|++
T Consensus       136 ~yLH~~~IiHrDiKp~NILl~~-~~~~~kl~DFG~a~~~~~~~~~~-------~~~gt~~y~aPE~~~~~~~~~~~~DIw  207 (350)
T d1q5ka_         136 AYIHSFGICHRDIKPQNLLLDP-DTAVLKLCDFGSAKQLVRGEPNV-------SYICSRYYRAPELIFGATDYTSSIDVW  207 (350)
T ss_dssp             HHHHTTTEECCCCCGGGEEECT-TTCCEEECCCTTCEECCTTSCCC-------SCCSCTTSCCHHHHTTCSSCCTHHHHH
T ss_pred             HHHHhcCCcccCCCcceEEEec-CCCceeEecccchhhccCCcccc-------cccccccccChHHhhcccCCCcceeec
Confidence            8899999999999999999985 23489999999998876543211       1234566667766543 3456778999


Q ss_pred             HHHHHHHHHH
Q 004254          527 AVRRTAQFFL  536 (765)
Q Consensus       527 ~l~~~~~~~l  536 (765)
                      ++.-.+.+++
T Consensus       208 SlG~il~el~  217 (350)
T d1q5ka_         208 SAGCVLAELL  217 (350)
T ss_dssp             HHHHHHHHHH
T ss_pred             ccceEEEehh
Confidence            9987766554

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.2e-15  Score=156.53  Aligned_cols=181  Identities=17%  Similarity=0.153  Sum_probs=117.1

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|+||.||+|+.  +|+.||||+.+.......                                        ..-.
T Consensus        24 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~----------------------------------------~~~~   63 (348)
T d2gfsa1          24 SPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSII----------------------------------------HAKR   63 (348)
T ss_dssp             EECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHH----------------------------------------HHHH
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEECchhcChH----------------------------------------HHHH
Confidence            6899999999999998  699999998754321110                                        0112


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeecc----CCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHH--HHHHHHHH
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEY----TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA--VESYLEQI  450 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~----st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~l--i~~~L~qi  450 (765)
                      +.+|++.+.++    .+...|.+..++...    ....+++|||+.|++|.++..  ...++...+...+  +-..+..+
T Consensus        64 ~~~Ei~il~~l----~h~~iv~~~~~~~~~~~~~~~~~~~i~~~~~gg~L~~~~~--~~~l~e~~~~~i~~qil~aL~~L  137 (348)
T d2gfsa1          64 TYRELRLLKHM----KHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVK--CQKLTDDHVQFLIYQILRGLKYI  137 (348)
T ss_dssp             HHHHHHHHHHC----CCTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHT--TCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCeeeEEEEEeeccccccCceEEEEEeecCCchhhhcc--cccccHHHHHHHHHHHHHHHHHH
Confidence            34555555544    233334444444321    233477788889999998753  2345555444333  33457889


Q ss_pred             HhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHH
Q 004254          451 LSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVR  529 (765)
Q Consensus       451 ~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~  529 (765)
                      |..|++|||+||+||+++.  +|.++++|||++...+......         .+...+++++.... ...+...|++++.
T Consensus       138 H~~giiHrDiKp~NILi~~--~~~~kl~dfg~a~~~~~~~~~~---------~g~~~y~apE~~~~~~~~~~~~DiwSlG  206 (348)
T d2gfsa1         138 HSADIIHRDLKPSNLAVNE--DCELKILDFGLARHTDDEMTGY---------VATRWYRAPEIMLNWMHYNQTVDIWSVG  206 (348)
T ss_dssp             HHTTCCCCCCCGGGEEECT--TCCEEECCC----CCTGGGSSS---------CHHHHTSCHHHHTTCSCCCTTHHHHHHH
T ss_pred             HhCCCcccccCCccccccc--cccccccccchhcccCcccccc---------cccccccCchhhcCCccCCcccchhhhh
Confidence            9999999999999999986  8999999999998876543221         23445556665443 3456778999998


Q ss_pred             HHHHHHH
Q 004254          530 RTAQFFL  536 (765)
Q Consensus       530 ~~~~~~l  536 (765)
                      ..+..++
T Consensus       207 v~l~~ll  213 (348)
T d2gfsa1         207 CIMAELL  213 (348)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776654

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.9e-15  Score=154.68  Aligned_cols=184  Identities=15%  Similarity=0.081  Sum_probs=119.2

Q ss_pred             ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004254          299 EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEID  376 (765)
Q Consensus       299 ~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElD  376 (765)
                      +.||+|+||.||+|+.  +|+.||||+.+......                                  ....      .
T Consensus         8 ~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~----------------------------------~~~~------~   47 (292)
T d1unla_           8 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDE----------------------------------GVPS------S   47 (292)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEESSCSST----------------------------------THHH------H
T ss_pred             eEEecCcCeEEEEEEECCCCcEEEEEEEehhhCCh----------------------------------HHHH------H
Confidence            5799999999999998  68999999985432111                                  0011      2


Q ss_pred             HHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHHHHH--HHHHHHHhCC
Q 004254          377 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVE--SYLEQILSHG  454 (765)
Q Consensus       377 f~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~li~--~~L~qi~~~G  454 (765)
                      +.+|...+..+     ++++|.-..-+.......+++||++.|..+..+... ........+...+.+  ..++.+|..|
T Consensus        48 ~~~E~~il~~l-----~h~niv~~~~~~~~~~~~~iv~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~q~~~aL~~lH~~~  121 (292)
T d1unla_          48 ALREICLLKEL-----KHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSC-NGDLDPEIVKSFLFQLLKGLGFCHSRN  121 (292)
T ss_dssp             HHHHHHHHTTC-----CCTTBCCEEEEEECSSEEEEEEECCSEEHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhc-----CcCCEEeeccccccccceeEEeeecccccccccccc-ccccchhHHHHHHHHHHHHHHHhhcCC
Confidence            33444444332     233333333333445667999999999988776432 223343333333222  3478899999


Q ss_pred             ccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHc-CCCCCCCCHHHHHHHHH
Q 004254          455 FFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQM-GVLVPTGDTTAVRRTAQ  533 (765)
Q Consensus       455 ffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~l-G~~~~~~D~~~l~~~~~  533 (765)
                      ++|+|+||+||+++.  ++.++++|||.+...+.......      ..........+++... ...++..|++++.-.+.
T Consensus       122 IvHrDiKP~NIli~~--~~~~kl~DFG~a~~~~~~~~~~~------~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~  193 (292)
T d1unla_         122 VLHRDLKPQNLLINR--NGELKLANFGLARAFGIPVRCYS------AEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFA  193 (292)
T ss_dssp             EECCCCSGGGEEECT--TCCEEECCCTTCEECCSCCSCCC------SCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHH
T ss_pred             EeeecccCccccccc--CCceeeeecchhhcccCCCccce------eeccccchhhhhHhccCCCCCchhhccccchHHH
Confidence            999999999999985  78999999999998765432110      0123445556665544 33566789999987766


Q ss_pred             HHH
Q 004254          534 FFL  536 (765)
Q Consensus       534 ~~l  536 (765)
                      +++
T Consensus       194 ell  196 (292)
T d1unla_         194 ELA  196 (292)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            554

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1e-14  Score=154.50  Aligned_cols=194  Identities=18%  Similarity=0.189  Sum_probs=125.3

Q ss_pred             cccCc-ccccccceeEEEEEEe-----CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHH
Q 004254          294 ERFDV-EPIAAASLGQVHRARL-----KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDEC  367 (765)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l-----~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~  367 (765)
                      +.|+. +.||+|++|.||+|+.     +|+.||||+.++.....                .        ....       
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~----------------~--------~~~~-------   72 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQ----------------K--------AKTT-------   72 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEE----------------E--------ESSG-------
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhcc----------------c--------hHHH-------
Confidence            34544 7899999999999986     38999999875432100                0        0000       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--HHHH
Q 004254          368 ASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--AVES  445 (765)
Q Consensus       368 ~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--li~~  445 (765)
                             -.+.+|++.+.++.+    +++|.--.-+.+.....+++|||++|+.|.+...... ......+...  .+-.
T Consensus        73 -------~~~~~E~~il~~l~h----~pnIv~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~~-~~~e~~~~~~~~Qi~~  140 (322)
T d1vzoa_          73 -------EHTRTERQVLEHIRQ----SPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRE-RFTEHEVQIYVGEIVL  140 (322)
T ss_dssp             -------GGCCCHHHHHHHHHT----CTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHhccC----CCeEEEeeeeeccCCceeeeeecccccHHHHHHHhcc-cccHHHHHHHHHHHHH
Confidence                   023456666666653    2333222233344566799999999999988653222 2232222222  2334


Q ss_pred             HHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC--CCCCCC
Q 004254          446 YLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG--VLVPTG  523 (765)
Q Consensus       446 ~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG--~~~~~~  523 (765)
                      .++++|..|++|+|+||.||+++.  +|.++|+|||++..+........     ....+.+.++.++....+  ...+..
T Consensus       141 al~~lH~~~ivHrDiKp~Nill~~--~~~vkL~DFG~a~~~~~~~~~~~-----~~~~g~~~~~~pe~~~~~~~~~~~ks  213 (322)
T d1vzoa_         141 ALEHLHKLGIIYRDIKLENILLDS--NGHVVLTDFGLSKEFVADETERA-----YDFCGTIEYMAPDIVRGGDSGHDKAV  213 (322)
T ss_dssp             HHHHHHHTTCCCCCCCGGGEEECT--TSCEEESCSSEEEECCGGGGGGG-----CGGGSCCTTCCHHHHTTCC---CTHH
T ss_pred             HHHHhhcCCEEeccCCccceeecC--CCCEEEeeccchhhhcccccccc-----cccccccccchhHHhhcCCcCCCchh
Confidence            578899999999999999999986  78999999999998765432211     112456667777776543  234567


Q ss_pred             CHHHHHHHHHHHHH
Q 004254          524 DTTAVRRTAQFFLN  537 (765)
Q Consensus       524 D~~~l~~~~~~~l~  537 (765)
                      |++++.-.+.+++.
T Consensus       214 DIWSlG~iLyellt  227 (322)
T d1vzoa_         214 DWWSLGVLMYELLT  227 (322)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHh
Confidence            99999987776653

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.8e-14  Score=151.07  Aligned_cols=194  Identities=15%  Similarity=0.107  Sum_probs=118.9

Q ss_pred             cccCc-ccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 004254          294 ERFDV-EPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASV  370 (765)
Q Consensus       294 ~~fd~-~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~  370 (765)
                      ..|+. +.||.|++|+||+|+.  +|+.||||+.+..-...                          ..           
T Consensus        10 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~--------------------------~~-----------   52 (318)
T d3blha1          10 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE--------------------------GF-----------   52 (318)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTT--------------------------SS-----------
T ss_pred             CCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcch--------------------------HH-----------
Confidence            34443 7899999999999998  69999999863211000                          00           


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccceeeec-------cCCCeEEEEeecCCCChhhhhhhhhcCCCHHHHHHH--
Q 004254          371 LYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWE-------YTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY--  441 (765)
Q Consensus       371 l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e-------~st~~vLVMEyieG~~L~d~~~l~~~g~d~~~ia~~--  441 (765)
                         ..++.+|...+.++    .+...+.+..++..       .....+++|||+++..+..... .........+...  
T Consensus        53 ---~~~~~~E~~il~~l----~h~nii~~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~  124 (318)
T d3blha1          53 ---PITALREIKILQLL----KHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSN-VLVKFTLSEIKRVMQ  124 (318)
T ss_dssp             ---CHHHHHHHHHHHHC----CCTTBCCEEEEEEC----------CEEEEEECCCEEHHHHHTC-TTCCCCHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHh----cCCCccceEeeeecccccccccCceEEEEEeccCCCccchhhh-cccccccHHHHHHHH
Confidence               01234555555544    23333344444322       1234689999999877654332 2223333333222  


Q ss_pred             HHHHHHHHHHhCCccccCCCCCcEEEeecCCCcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHHHHHHHcC-CCC
Q 004254          442 AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVLQAMVQMG-VLV  520 (765)
Q Consensus       442 li~~~L~qi~~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~~~l~~lG-~~~  520 (765)
                      .+-..++.+|+.|++|+|+||.|||++.  ++.+++.|||++..++........  ......++..+++++.+... ..+
T Consensus       125 qil~~l~~lH~~~ivHrDlKp~NILl~~--~~~~kl~dfg~~~~~~~~~~~~~~--~~~~~~gT~~Y~aPE~~~~~~~~~  200 (318)
T d3blha1         125 MLLNGLYYIHRNKILHRDMKAANVLITR--DGVLKLADFGLARAFSLAKNSQPN--RYTNRVVTLWYRPPELLLGERDYG  200 (318)
T ss_dssp             HHHHHHHHHHHTTEECCCCCGGGEEECT--TSCEEECCCTTCEECCC-----CC--CCCSCCSCGGGCCHHHHTTCSSCC
T ss_pred             HHHHHHHHhccCCEEecCcCchheeecC--CCcEEeeecceeeecccccccccc--cccceecCHHHhhHHHHcCCCCCC
Confidence            2334478899999999999999999986  899999999999887754322110  00011256777888877533 356


Q ss_pred             CCCCHHHHHHHHHHHH
Q 004254          521 PTGDTTAVRRTAQFFL  536 (765)
Q Consensus       521 ~~~D~~~l~~~~~~~l  536 (765)
                      +..|++++.-.+.+++
T Consensus       201 ~k~DiwSlGvil~el~  216 (318)
T d3blha1         201 PPIDLWGAGCIMAEMW  216 (318)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             cHHHcccCCceeeeHh
Confidence            7789999998776654

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=1.6e-13  Score=145.74  Aligned_cols=200  Identities=12%  Similarity=0.059  Sum_probs=118.2

Q ss_pred             hhhhhc--ccC-cccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHH
Q 004254          289 LDDVFE--RFD-VEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAI  363 (765)
Q Consensus       289 ~eeiF~--~fd-~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i  363 (765)
                      ++++|.  .+. .+.||.|++|+||+|+.  +|+.||||+.+..-.                                  
T Consensus         6 ~g~~~~~~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~----------------------------------   51 (362)
T d1q8ya_           6 KGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKV----------------------------------   51 (362)
T ss_dssp             TTCEETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHH----------------------------------
T ss_pred             CCCCccCCcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEecccc----------------------------------
Confidence            455554  244 47899999999999998  699999999854310                                  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeec----cCCCeEEEEeecCCCChhhhh--hhhhcCCCHHH
Q 004254          364 YDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWE----YTTPQILTMEYVPGIKINRIQ--SLDELGVDRKR  437 (765)
Q Consensus       364 ~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e----~st~~vLVMEyieG~~L~d~~--~l~~~g~d~~~  437 (765)
                         ..+...+|++..++..+..........++  .+.+++..    -....+++|+++.+.......  ...........
T Consensus        52 ---~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~--~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (362)
T d1q8ya_          52 ---YTEAAEDEIKLLQRVNDADNTKEDSMGAN--HILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIY  126 (362)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTCCSHHHHHHHT--TBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHH
T ss_pred             ---chHHHHHHHHHHHHhcchhhhhhhhcCcC--ceEEEEEEeeeccccceeeeeeecccccccccccccccccCCcHHH
Confidence               01122344444444332111110000111  12333221    123446777776655433221  11222333333


Q ss_pred             HHHHH--HHHHHHHHHh-CCccccCCCCCcEEEeecCC----CcEEEEeecceeccChhhHHHHHHHHHHHhhcCHHHHH
Q 004254          438 LGRYA--VESYLEQILS-HGFFHADPHPGNIAVDDVNG----GRLIFYDFGMMGSISPNIREGLLEAFYGIYEKDADKVL  510 (765)
Q Consensus       438 ia~~l--i~~~L~qi~~-~GffHaDpHPGNILV~~~~~----g~l~LiDFGlv~~L~~~~r~~l~~l~~ai~~~D~~~i~  510 (765)
                      +...+  +...+.++|. .|++|+|+||+|||++....    ..++++|||.+........         ...+++.+++
T Consensus       127 i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~~~~---------~~~gt~~y~a  197 (362)
T d1q8ya_         127 VKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYT---------NSIQTREYRS  197 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCC---------SCCSCGGGCC
T ss_pred             HHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCcccccceeeEeecccccccccccc---------cccccccccC
Confidence            33222  2233667786 99999999999999985211    2599999999987665331         1246778888


Q ss_pred             HHHHHcCCCCCCCCHHHHHHHHHHHH
Q 004254          511 QAMVQMGVLVPTGDTTAVRRTAQFFL  536 (765)
Q Consensus       511 ~~l~~lG~~~~~~D~~~l~~~~~~~l  536 (765)
                      +++...+-.++..|++++...+..++
T Consensus       198 PE~~~~~~~~~~~DiwSlG~il~el~  223 (362)
T d1q8ya_         198 PEVLLGAPWGCGADIWSTACLIFELI  223 (362)
T ss_dssp             HHHHHTCCCCTHHHHHHHHHHHHHHH
T ss_pred             hhhccccCCCccccccchHHHHHHHH
Confidence            88888777778889999987765554

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=98.79  E-value=3e-08  Score=98.68  Aligned_cols=147  Identities=21%  Similarity=0.205  Sum_probs=87.8

Q ss_pred             hhhcccCcccccccc-eeEEEEEEe-CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 004254          291 DVFERFDVEPIAAAS-LGQVHRARL-KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECA  368 (765)
Q Consensus       291 eiF~~fd~~PIgsaS-iGQVhrA~l-~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~  368 (765)
                      +.....+-+|++.|. -++||+... .|..+++|+.+|+-...                                     
T Consensus         8 ~~l~g~~~~~~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~~~~-------------------------------------   50 (255)
T d1nd4a_           8 ERLFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNE-------------------------------------   50 (255)
T ss_dssp             TTTTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSCTTSC-------------------------------------
T ss_pred             HhccCCceEEcCCcccCCeEEEEEeCCCCEEEEEeCCccCHhH-------------------------------------
Confidence            333444556777765 589999999 57779999987764332                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeee--ccCCCeEEEEeecCCCChhhhh--------h-------hhh-
Q 004254          369 SVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFW--EYTTPQILTMEYVPGIKINRIQ--------S-------LDE-  430 (765)
Q Consensus       369 ~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~--e~st~~vLVMEyieG~~L~d~~--------~-------l~~-  430 (765)
                              +..|++.++.+..     ..+.+|+++.  ...+..+++|||++|.++.+..        .       +.. 
T Consensus        51 --------l~~E~~~l~~L~~-----~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~~~~~~~~~~~~~~l~~~la~LH~~  117 (255)
T d1nd4a_          51 --------LQDEAARLSWLAT-----TGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLSSHLAPAEKVSIMADAMRRLHTL  117 (255)
T ss_dssp             --------HHHHHHHHHHHHT-----TTCCBCCEEEEEECSSCEEEEEECCSSEETTTSCCCHHHHHHHHHHHHHHHTTS
T ss_pred             --------HHHHHHHHHHHHh-----cCCCCCceeeecccccceEEEEEeeeccccccccccHHHHHHHHHHHHHHHccC
Confidence                    2334444444432     3477899885  3345679999999998875421        0       000 


Q ss_pred             ----cCCC--HH-HHHHH---------------------HHHHHHHHHHh-------CCccccCCCCCcEEEeecCCCcE
Q 004254          431 ----LGVD--RK-RLGRY---------------------AVESYLEQILS-------HGFFHADPHPGNIAVDDVNGGRL  475 (765)
Q Consensus       431 ----~g~d--~~-~ia~~---------------------li~~~L~qi~~-------~GffHaDpHPGNILV~~~~~g~l  475 (765)
                          .+..  .. .+...                     .....+..+..       ..++|+|+||+||++++  ++.+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~liHgD~~~~Nvl~~~--~~~~  195 (255)
T d1nd4a_         118 DPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVEN--GRFS  195 (255)
T ss_dssp             CGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEET--TEEE
T ss_pred             ChhhCCCcccchhhHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHHhCCccCCceEEeCCCCCcceEEeC--CceE
Confidence                0000  00 00000                     01111222222       24899999999999984  4446


Q ss_pred             EEEeecceeccChh
Q 004254          476 IFYDFGMMGSISPN  489 (765)
Q Consensus       476 ~LiDFGlv~~L~~~  489 (765)
                      .+|||+.++.-++.
T Consensus       196 ~iID~~~~~~g~~~  209 (255)
T d1nd4a_         196 GFIDCGRLGVADRY  209 (255)
T ss_dssp             EECCCTTCEEEETH
T ss_pred             EEEEchhcccCCHH
Confidence            79999999876553

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.40  E-value=1.2e-06  Score=87.01  Aligned_cols=34  Identities=35%  Similarity=0.369  Sum_probs=27.6

Q ss_pred             CccccCCCCCcEEEeecCCCcEEEEeecceeccChh
Q 004254          454 GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPN  489 (765)
Q Consensus       454 GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~~~  489 (765)
                      .++|+|+||+||++++  ++.+.+|||+.++.-++.
T Consensus       184 ~l~HgD~~~~Nil~~~--~~~~~lIDwe~a~~g~~~  217 (263)
T d1j7la_         184 VFSHGDLGDSNIFVKD--GKVSGFIDLGRSGRADKW  217 (263)
T ss_dssp             EEECSCCCTTSEEEET--TEEEEECCCTTCEEEEHH
T ss_pred             EEEEeeccCcceeecC--CceEEEeechhcccCCHH
Confidence            4899999999999973  444569999999976654

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=98.33  E-value=2.2e-06  Score=91.78  Aligned_cols=89  Identities=18%  Similarity=0.122  Sum_probs=56.8

Q ss_pred             ccCcccccccceeEEEEEEe--CCeEEEEEEecCCchhhHHHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 004254          295 RFDVEPIAAASLGQVHRARL--KGEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY  372 (765)
Q Consensus       295 ~fd~~PIgsaSiGQVhrA~l--~G~~VAVKVqrP~i~~~i~~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~  372 (765)
                      .++-++||.|.+..||+.+.  .|+.|+||...|.++..                   +...  ......          
T Consensus        28 ~l~~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~-------------------g~~~--~~~~~R----------   76 (392)
T d2pula1          28 TLTCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVV-------------------GESW--PLTIDR----------   76 (392)
T ss_dssp             CCEEEECCSSSSEEEEEEEC----CEEEEEEECCGGGC---------------------CCC--CCCTTH----------
T ss_pred             CeeEEEeCCCceEeEEEEEeCCCCeEEEEecCCchhccc-------------------CCCC--CCCHHH----------
Confidence            34557899999999999988  37899999887765321                   1000  011110          


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEEEeecCCCCh
Q 004254          373 QEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKI  422 (765)
Q Consensus       373 ~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLVMEyieG~~L  422 (765)
                          ...|++.+..+..    .....+|++|.......+++|||++|.++
T Consensus        77 ----~~~E~~~L~~~~~----~~p~~vP~v~~~d~~~~~lvmE~L~~~~~  118 (392)
T d2pula1          77 ----ARIESSALIRQGE----HVPHLVPRVFYSDTEMAVTVMEDLSHLKI  118 (392)
T ss_dssp             ----HHHHHHHHHHHHT----TCGGGSCCEEEEETTTTEEEECCCTTSEE
T ss_pred             ----HHHHHHHHHHhhh----hCCCCcceEEEEcCCCCEEEEeccCCccc
Confidence                1234444444443    23467899998767788999999998765

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=5.6e-07  Score=93.93  Aligned_cols=31  Identities=29%  Similarity=0.311  Sum_probs=25.3

Q ss_pred             CCccccCCCCCcEEEeecCCCcEEEEeecceeccC
Q 004254          453 HGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSIS  487 (765)
Q Consensus       453 ~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L~  487 (765)
                      .|++|+|+||+|||++   ++ ..++||+-++.=.
T Consensus       192 ~~liHgDlh~~NvL~~---~~-~~~IDFdd~~~g~  222 (325)
T d1zyla1         192 VLRLHGDCHAGNILWR---DG-PMFVDLDDARNGP  222 (325)
T ss_dssp             CEECCSSCSGGGEEES---SS-EEECCCTTCCEEC
T ss_pred             ceeecCCCCcccEEEe---CC-ceEEechhcccCc
Confidence            5789999999999996   34 4589999888643

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.54  E-value=0.00018  Score=73.38  Aligned_cols=33  Identities=21%  Similarity=0.145  Sum_probs=27.9

Q ss_pred             hCCccccCCCCCcEEEeecCCCcEEEEeecceecc
Q 004254          452 SHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSI  486 (765)
Q Consensus       452 ~~GffHaDpHPGNILV~~~~~g~l~LiDFGlv~~L  486 (765)
                      ..|++|+|+||+|++++.  ++...++||+.++.-
T Consensus       182 ~~giIHgDl~~dNvl~~~--~~v~gvIDF~~~~~~  214 (316)
T d2ppqa1         182 PAGVIHADLFQDNVFFLG--DELSGLIDFYFACND  214 (316)
T ss_dssp             CEEEECSCCCGGGEEEET--TEEEEECCCTTCEEE
T ss_pred             ccccccCCcchhhhhccc--ccceeEecccccccc
Confidence            478999999999999984  455689999998854

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.82  E-value=0.0024  Score=67.30  Aligned_cols=107  Identities=18%  Similarity=0.265  Sum_probs=69.5

Q ss_pred             hhCCCCCC--hHHHHHHHHHHhCCChhhh-hcccCcccccccceeEEEEEEe-C--------CeEEEEEEecCCchhhHH
Q 004254          266 QDQVPPFP--SETAVSIVEEELGAPLDDV-FERFDVEPIAAASLGQVHRARL-K--------GEEVVVKVQRPGLKDLFD  333 (765)
Q Consensus       266 qd~vpp~p--~~~v~~iie~elG~~~eei-F~~fd~~PIgsaSiGQVhrA~l-~--------G~~VAVKVqrP~i~~~i~  333 (765)
                      ..++...|  -+.+++++.+.++..|..+ .+++.-++++.|-.-++|+... +        ++.|++++-- +...   
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~l~~~W~~~~~~~l~v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g-~~~~---   87 (395)
T d1nw1a_          12 DTDANTIPELKERAHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-NPET---   87 (395)
T ss_dssp             TCCGGGCHHHHHHHHHHHHHHHCTHHHHCCGGGEEEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC-SCCC---
T ss_pred             cccccccchHHHHHHHHHHHhCcccccCCCccceEEEEcCCccccceEEEEeCCCCccccCCCCcEEEEecC-Ccch---
Confidence            33444444  2346667777788777664 2456678999999999999987 2        2567777642 1111   


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeeccCCCeEEE
Q 004254          334 IDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILT  413 (765)
Q Consensus       334 ~DL~il~~la~~l~~~~p~~~~~~~d~~~i~~E~~~~l~~ElDf~~EA~Nl~rf~~~f~~~~~V~vP~vy~e~st~~vLV  413 (765)
                                                              .+|-.+|.+++..+.+.     ++ .|++|...  ...++
T Consensus        88 ----------------------------------------~idr~~E~~i~~~ls~~-----gl-~Pkll~~~--~~g~I  119 (395)
T d1nw1a_          88 ----------------------------------------ESHLVAESVIFTLLSER-----HL-GPKLYGIF--SGGRL  119 (395)
T ss_dssp             ----------------------------------------HHHHHHHHHHHHHHHHT-----TS-SSCEEEEE--TTEEE
T ss_pred             ----------------------------------------hhHHHHHHHHHHHHHhC-----CC-CCeEEEEc--CCceE
Confidence                                                    12334566677666552     33 68888643  46899


Q ss_pred             EeecCCCChhh
Q 004254          414 MEYVPGIKINR  424 (765)
Q Consensus       414 MEyieG~~L~d  424 (765)
                      |||++|.++..
T Consensus       120 ~efi~g~~l~~  130 (395)
T d1nw1a_         120 EEYIPSRPLSC  130 (395)
T ss_dssp             ECCCCEEECCT
T ss_pred             EEEeccccCCh
Confidence            99999977653