Query 004255
Match_columns 765
No_of_seqs 509 out of 2246
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 20:15:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2109 WD40 repeat protein [G 100.0 4.9E-59 1.1E-63 515.0 17.9 628 12-760 1-649 (788)
2 PF12490 BCAS3: Breast carcino 100.0 2.2E-54 4.8E-59 452.2 16.2 238 505-750 1-251 (251)
3 KOG2110 Uncharacterized conser 100.0 7.1E-48 1.5E-52 404.6 32.7 325 53-596 2-341 (391)
4 KOG2111 Uncharacterized conser 100.0 5.4E-37 1.2E-41 317.7 32.5 315 58-594 7-331 (346)
5 KOG0271 Notchless-like WD40 re 99.9 1.8E-24 3.8E-29 228.6 22.7 315 51-474 110-452 (480)
6 KOG0263 Transcription initiati 99.9 2.1E-23 4.6E-28 237.0 23.6 228 74-465 389-653 (707)
7 KOG0272 U4/U6 small nuclear ri 99.9 2.6E-23 5.6E-28 222.3 20.1 255 54-476 173-433 (459)
8 KOG0271 Notchless-like WD40 re 99.9 2.7E-22 5.8E-27 212.1 19.5 291 71-459 165-479 (480)
9 KOG0315 G-protein beta subunit 99.9 2E-21 4.4E-26 196.3 24.4 264 77-472 13-299 (311)
10 KOG0272 U4/U6 small nuclear ri 99.9 1.5E-21 3.2E-26 208.9 17.4 240 52-459 213-458 (459)
11 cd00200 WD40 WD40 domain, foun 99.8 3.5E-18 7.6E-23 173.4 33.4 277 53-459 6-289 (289)
12 KOG0273 Beta-transducin family 99.8 4.5E-19 9.8E-24 192.0 26.6 265 74-461 246-523 (524)
13 KOG0286 G-protein beta subunit 99.8 1.2E-18 2.6E-23 179.7 28.0 257 52-475 51-317 (343)
14 KOG0279 G protein beta subunit 99.8 2.5E-18 5.5E-23 176.5 27.4 248 52-466 11-267 (315)
15 KOG0295 WD40 repeat-containing 99.8 7.2E-19 1.6E-23 185.7 21.7 252 54-459 148-404 (406)
16 KOG0291 WD40-repeat-containing 99.8 5.5E-18 1.2E-22 191.6 28.9 271 74-466 276-555 (893)
17 KOG0266 WD40 repeat-containing 99.8 1.9E-17 4.1E-22 188.9 31.6 237 74-472 170-420 (456)
18 KOG0319 WD40-repeat-containing 99.8 1.5E-18 3.2E-23 196.2 21.6 113 342-474 427-548 (775)
19 KOG0273 Beta-transducin family 99.8 3.1E-18 6.7E-23 185.6 22.9 270 77-468 193-489 (524)
20 KOG0295 WD40 repeat-containing 99.8 1.4E-18 3.1E-23 183.5 19.3 248 55-472 107-375 (406)
21 KOG0279 G protein beta subunit 99.8 1.5E-17 3.3E-22 170.8 25.8 226 74-462 74-314 (315)
22 PLN00181 protein SPA1-RELATED; 99.8 2.6E-17 5.7E-22 199.8 32.6 236 75-460 545-792 (793)
23 KOG0281 Beta-TrCP (transducin 99.8 3.2E-19 6.8E-24 186.9 12.8 230 55-464 196-431 (499)
24 KOG0315 G-protein beta subunit 99.8 1.3E-17 2.7E-22 169.1 23.4 230 172-474 19-259 (311)
25 KOG0265 U5 snRNP-specific prot 99.8 9.7E-18 2.1E-22 173.7 23.1 260 52-475 43-310 (338)
26 KOG0318 WD40 repeat stress pro 99.8 1.6E-16 3.5E-21 174.2 31.8 319 54-469 188-568 (603)
27 KOG0266 WD40 repeat-containing 99.8 2.3E-17 5.1E-22 188.1 26.1 187 172-473 180-376 (456)
28 PLN00181 protein SPA1-RELATED; 99.8 2E-16 4.4E-21 192.0 34.6 245 55-462 482-739 (793)
29 KOG0291 WD40-repeat-containing 99.8 4.6E-17 9.9E-22 184.2 26.3 248 71-465 358-616 (893)
30 KOG0292 Vesicle coat complex C 99.8 1.7E-17 3.7E-22 189.7 23.0 260 74-470 20-289 (1202)
31 KOG0285 Pleiotropic regulator 99.8 2.8E-17 6E-22 173.2 21.1 223 75-462 163-390 (460)
32 KOG0306 WD40-repeat-containing 99.8 2.8E-17 6.1E-22 185.9 22.3 225 75-462 424-665 (888)
33 KOG0263 Transcription initiati 99.8 2.7E-17 5.9E-22 187.6 21.4 182 176-473 434-619 (707)
34 KOG0284 Polyadenylation factor 99.8 1.5E-17 3.3E-22 177.7 16.9 247 74-466 107-385 (464)
35 KOG0319 WD40-repeat-containing 99.8 5.9E-17 1.3E-21 183.3 21.9 114 342-475 478-591 (775)
36 KOG0285 Pleiotropic regulator 99.7 4.1E-17 8.8E-22 172.0 18.1 215 96-473 142-360 (460)
37 KOG0274 Cdc4 and related F-box 99.7 2.3E-16 5E-21 181.9 26.0 242 51-468 244-489 (537)
38 KOG0278 Serine/threonine kinas 99.7 2.9E-17 6.2E-22 166.4 15.7 198 53-401 97-298 (334)
39 KOG0286 G-protein beta subunit 99.7 5.4E-16 1.2E-20 160.3 24.8 224 73-459 107-343 (343)
40 PTZ00421 coronin; Provisional 99.7 2.3E-15 4.9E-20 172.9 31.9 222 84-463 51-292 (493)
41 KOG0274 Cdc4 and related F-box 99.7 3.7E-16 8.1E-21 180.2 24.2 228 77-471 220-451 (537)
42 KOG0288 WD40 repeat protein Ti 99.7 8.5E-17 1.8E-21 172.3 17.4 224 74-459 231-459 (459)
43 KOG0310 Conserved WD40 repeat- 99.7 9.3E-16 2E-20 167.3 23.6 235 52-459 64-307 (487)
44 KOG0276 Vesicle coat complex C 99.7 1.9E-16 4.1E-21 176.2 17.7 223 173-469 35-265 (794)
45 KOG0276 Vesicle coat complex C 99.7 8.9E-16 1.9E-20 170.9 22.2 222 74-457 66-295 (794)
46 PTZ00420 coronin; Provisional 99.7 1.2E-14 2.6E-19 168.4 31.5 218 86-462 56-294 (568)
47 KOG0268 Sof1-like rRNA process 99.7 1.5E-16 3.3E-21 168.1 14.2 278 52-463 62-347 (433)
48 cd00200 WD40 WD40 domain, foun 99.7 1.5E-14 3.3E-19 146.7 27.7 203 99-463 3-209 (289)
49 KOG0281 Beta-TrCP (transducin 99.7 1.9E-16 4.1E-21 166.3 13.8 239 53-462 234-478 (499)
50 KOG0643 Translation initiation 99.7 9.9E-15 2.1E-19 149.5 25.7 255 54-461 8-317 (327)
51 KOG0316 Conserved WD40 repeat- 99.7 4.5E-15 9.8E-20 149.6 22.1 209 98-472 10-224 (307)
52 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 5.3E-14 1.1E-18 147.7 31.2 267 76-465 2-283 (300)
53 KOG1407 WD40 repeat protein [F 99.7 3.9E-15 8.5E-20 152.0 21.3 243 52-463 16-263 (313)
54 KOG0282 mRNA splicing factor [ 99.7 4.3E-16 9.3E-21 169.7 14.8 259 52-474 210-475 (503)
55 KOG0316 Conserved WD40 repeat- 99.7 5.6E-15 1.2E-19 149.0 21.0 245 53-469 14-265 (307)
56 PTZ00421 coronin; Provisional 99.7 5.1E-14 1.1E-18 161.7 31.7 249 53-463 72-333 (493)
57 KOG1446 Histone H3 (Lys4) meth 99.7 8.6E-14 1.9E-18 145.7 29.9 249 55-470 13-271 (311)
58 KOG0310 Conserved WD40 repeat- 99.7 4E-15 8.6E-20 162.5 20.4 245 52-465 22-272 (487)
59 KOG0305 Anaphase promoting com 99.7 8.7E-15 1.9E-19 164.5 23.7 237 56-463 217-463 (484)
60 KOG0296 Angio-associated migra 99.7 5.9E-14 1.3E-18 148.9 28.3 284 52-461 102-398 (399)
61 KOG0292 Vesicle coat complex C 99.7 2.4E-15 5.2E-20 172.5 18.9 212 173-483 31-260 (1202)
62 KOG0265 U5 snRNP-specific prot 99.7 1.7E-14 3.6E-19 149.9 22.8 222 75-458 103-335 (338)
63 KOG0318 WD40 repeat stress pro 99.6 6.6E-14 1.4E-18 153.9 28.1 282 86-475 41-365 (603)
64 PTZ00420 coronin; Provisional 99.6 1.4E-13 3.1E-18 159.6 32.1 130 52-232 70-210 (568)
65 KOG0645 WD40 repeat protein [G 99.6 7.4E-14 1.6E-18 143.4 25.9 204 98-461 7-225 (312)
66 KOG0645 WD40 repeat protein [G 99.6 1.3E-13 2.8E-18 141.7 27.5 259 52-461 10-311 (312)
67 KOG0293 WD40 repeat-containing 99.6 1.2E-14 2.6E-19 155.8 19.1 282 52-463 220-515 (519)
68 KOG0277 Peroxisomal targeting 99.6 2E-14 4.3E-19 146.5 18.6 229 86-473 40-278 (311)
69 KOG0264 Nucleosome remodeling 99.6 8.3E-14 1.8E-18 151.3 22.6 112 343-462 289-405 (422)
70 KOG0308 Conserved WD40 repeat- 99.6 1.3E-14 2.9E-19 162.5 16.5 240 73-465 35-289 (735)
71 KOG1036 Mitotic spindle checkp 99.6 5.6E-14 1.2E-18 146.5 19.8 228 55-451 53-294 (323)
72 KOG0313 Microtubule binding pr 99.6 1.8E-13 4E-18 145.8 23.0 222 77-463 161-420 (423)
73 KOG0973 Histone transcription 99.6 1.9E-13 4.1E-18 161.0 25.2 249 54-462 67-356 (942)
74 KOG0313 Microtubule binding pr 99.6 1.8E-13 3.9E-18 145.8 22.4 264 75-475 116-391 (423)
75 KOG0288 WD40 repeat protein Ti 99.6 1.3E-14 2.9E-19 155.6 13.6 231 76-469 188-425 (459)
76 KOG0647 mRNA export protein (c 99.6 2.1E-13 4.5E-18 141.9 21.7 255 30-450 45-312 (347)
77 KOG0643 Translation initiation 99.6 2.5E-13 5.5E-18 139.3 21.9 212 100-470 5-229 (327)
78 KOG2055 WD40 repeat protein [G 99.5 1.7E-13 3.7E-18 148.9 18.2 249 55-463 246-514 (514)
79 KOG2096 WD40 repeat protein [G 99.5 1.2E-12 2.5E-17 137.0 23.6 261 53-459 83-400 (420)
80 KOG0289 mRNA splicing factor [ 99.5 5.1E-13 1.1E-17 144.3 21.4 226 76-461 232-462 (506)
81 KOG0277 Peroxisomal targeting 99.5 3E-13 6.6E-18 137.9 18.6 250 52-460 45-308 (311)
82 KOG0772 Uncharacterized conser 99.5 5.2E-13 1.1E-17 146.6 21.3 112 343-470 285-403 (641)
83 KOG1274 WD40 repeat protein [G 99.5 1.8E-12 3.9E-17 150.4 26.7 239 53-462 10-263 (933)
84 KOG0641 WD40 repeat protein [G 99.5 6.4E-12 1.4E-16 126.2 27.1 254 53-461 86-349 (350)
85 KOG1539 WD repeat protein [Gen 99.5 5.1E-12 1.1E-16 145.3 29.4 120 345-466 466-611 (910)
86 KOG0283 WD40 repeat-containing 99.5 1.1E-12 2.3E-17 151.5 22.8 193 152-464 368-579 (712)
87 KOG1407 WD40 repeat protein [F 99.5 2.8E-12 6.1E-17 131.3 23.3 229 65-461 68-311 (313)
88 KOG0264 Nucleosome remodeling 99.5 3.6E-13 7.8E-18 146.3 17.5 106 344-468 245-354 (422)
89 KOG1539 WD repeat protein [Gen 99.5 5.2E-12 1.1E-16 145.2 27.5 96 344-460 551-647 (910)
90 KOG1408 WD40 repeat protein [F 99.5 5.4E-13 1.2E-17 150.4 18.5 218 173-462 481-714 (1080)
91 KOG0282 mRNA splicing factor [ 99.5 8E-14 1.7E-18 152.2 11.0 207 96-462 205-416 (503)
92 KOG0269 WD40 repeat-containing 99.5 2.9E-13 6.4E-18 154.3 15.5 113 344-475 194-311 (839)
93 KOG0306 WD40-repeat-containing 99.5 4.7E-12 1E-16 144.1 24.0 301 56-475 320-636 (888)
94 KOG0278 Serine/threonine kinas 99.5 1.9E-12 4.1E-17 131.8 18.5 283 54-463 12-299 (334)
95 KOG0305 Anaphase promoting com 99.5 4.1E-12 9E-17 143.1 22.8 238 74-474 187-432 (484)
96 KOG0267 Microtubule severing p 99.5 1E-13 2.2E-18 156.9 9.5 213 75-452 40-259 (825)
97 KOG0275 Conserved WD40 repeat- 99.5 5E-13 1.1E-17 139.6 12.9 109 343-471 279-388 (508)
98 KOG0284 Polyadenylation factor 99.5 2.9E-13 6.3E-18 145.3 11.4 210 191-477 95-310 (464)
99 KOG0283 WD40 repeat-containing 99.5 3.8E-12 8.2E-17 147.0 21.1 105 343-469 384-489 (712)
100 KOG4283 Transcription-coupled 99.4 9.4E-12 2E-16 129.2 21.6 132 172-401 123-277 (397)
101 KOG2445 Nuclear pore complex c 99.4 5.2E-11 1.1E-15 124.5 27.0 277 52-461 9-318 (361)
102 KOG0640 mRNA cleavage stimulat 99.4 2.5E-12 5.3E-17 134.1 15.6 98 349-464 238-338 (430)
103 KOG2919 Guanine nucleotide-bin 99.4 8.8E-12 1.9E-16 130.8 19.5 120 349-485 230-352 (406)
104 KOG1332 Vesicle coat complex C 99.4 9E-12 1.9E-16 126.7 18.6 262 54-465 9-290 (299)
105 KOG0772 Uncharacterized conser 99.4 4.9E-12 1.1E-16 139.0 17.9 106 343-466 333-450 (641)
106 KOG0301 Phospholipase A2-activ 99.4 3.5E-11 7.6E-16 136.3 24.6 203 172-461 34-249 (745)
107 KOG0308 Conserved WD40 repeat- 99.4 1E-12 2.2E-17 147.7 12.1 111 344-474 135-256 (735)
108 KOG1446 Histone H3 (Lys4) meth 99.4 8.1E-11 1.8E-15 123.6 24.8 97 347-465 78-174 (311)
109 KOG0307 Vesicle coat complex C 99.4 1.7E-12 3.7E-17 153.7 13.1 246 63-463 66-329 (1049)
110 KOG0639 Transducin-like enhanc 99.4 7.7E-12 1.7E-16 136.9 17.2 262 74-460 430-703 (705)
111 KOG0300 WD40 repeat-containing 99.4 4.9E-11 1.1E-15 124.7 22.2 274 42-463 134-430 (481)
112 KOG1273 WD40 repeat protein [G 99.4 2E-11 4.4E-16 127.8 19.3 249 59-462 26-281 (405)
113 KOG0301 Phospholipase A2-activ 99.4 3.9E-11 8.4E-16 136.0 22.9 214 77-463 73-290 (745)
114 KOG0973 Histone transcription 99.4 3.6E-11 7.8E-16 142.1 23.6 117 341-474 143-266 (942)
115 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 1.1E-10 2.4E-15 122.5 25.1 176 172-464 10-190 (300)
116 KOG2106 Uncharacterized conser 99.4 3.4E-10 7.4E-15 124.5 28.6 263 55-459 245-519 (626)
117 KOG0267 Microtubule severing p 99.4 7.6E-13 1.6E-17 150.0 7.8 173 173-463 50-228 (825)
118 KOG0275 Conserved WD40 repeat- 99.4 1.7E-11 3.7E-16 128.3 17.2 255 55-478 212-484 (508)
119 KOG0294 WD40 repeat-containing 99.4 1.3E-10 2.7E-15 122.0 23.6 212 172-464 62-284 (362)
120 KOG0641 WD40 repeat protein [G 99.4 3.2E-10 6.9E-15 114.1 25.5 247 52-461 14-303 (350)
121 KOG4378 Nuclear protein COP1 [ 99.4 1.5E-11 3.2E-16 134.7 17.3 112 343-475 181-295 (673)
122 KOG0300 WD40 repeat-containing 99.4 2E-11 4.2E-16 127.6 17.1 239 178-466 129-391 (481)
123 KOG0289 mRNA splicing factor [ 99.4 1.2E-10 2.5E-15 126.3 23.5 241 52-460 257-505 (506)
124 KOG4283 Transcription-coupled 99.3 3.8E-11 8.2E-16 124.7 18.0 110 346-462 165-277 (397)
125 KOG0293 WD40 repeat-containing 99.3 2.2E-11 4.9E-16 131.0 16.2 243 51-401 264-514 (519)
126 KOG0269 WD40 repeat-containing 99.3 1.3E-11 2.7E-16 141.2 14.5 224 75-457 100-336 (839)
127 KOG0299 U3 snoRNP-associated p 99.3 7.7E-11 1.7E-15 128.5 19.7 217 73-451 212-445 (479)
128 KOG0640 mRNA cleavage stimulat 99.3 3.6E-11 7.9E-16 125.5 16.3 259 55-461 111-426 (430)
129 KOG0296 Angio-associated migra 99.3 2.4E-10 5.1E-15 121.9 22.5 205 97-462 56-264 (399)
130 KOG0302 Ribosome Assembly prot 99.3 7.6E-11 1.6E-15 125.9 18.4 105 342-464 273-381 (440)
131 KOG0299 U3 snoRNP-associated p 99.3 1.5E-10 3.2E-15 126.3 20.5 176 172-463 223-412 (479)
132 KOG0270 WD40 repeat-containing 99.3 9.3E-11 2E-15 127.5 18.6 180 172-464 265-452 (463)
133 KOG0647 mRNA export protein (c 99.3 8.6E-10 1.9E-14 115.3 25.0 252 55-473 26-293 (347)
134 KOG0294 WD40 repeat-containing 99.3 2.4E-10 5.2E-15 120.0 19.8 222 74-401 52-282 (362)
135 KOG1036 Mitotic spindle checkp 99.2 1.6E-09 3.4E-14 113.7 23.8 247 53-466 10-267 (323)
136 KOG0268 Sof1-like rRNA process 99.2 3.5E-11 7.5E-16 128.0 11.6 214 172-463 88-304 (433)
137 KOG2096 WD40 repeat protein [G 99.2 7.2E-11 1.6E-15 123.8 13.6 108 342-462 202-309 (420)
138 KOG0646 WD40 repeat protein [G 99.2 3.6E-10 7.8E-15 123.6 19.5 122 344-469 193-315 (476)
139 KOG2106 Uncharacterized conser 99.2 3.6E-09 7.7E-14 116.7 27.0 297 57-496 201-506 (626)
140 KOG1274 WD40 repeat protein [G 99.2 1.3E-09 2.8E-14 127.1 24.6 222 77-458 68-297 (933)
141 KOG2048 WD40 repeat protein [G 99.2 5.4E-09 1.2E-13 118.7 26.3 248 51-462 67-320 (691)
142 PRK11028 6-phosphogluconolacto 99.2 2.4E-08 5.3E-13 108.8 30.6 105 346-466 194-309 (330)
143 KOG0646 WD40 repeat protein [G 99.2 8.4E-10 1.8E-14 120.8 18.7 220 73-442 91-330 (476)
144 KOG2055 WD40 repeat protein [G 99.2 3.6E-09 7.8E-14 115.7 23.1 172 172-462 234-418 (514)
145 KOG0639 Transducin-like enhanc 99.2 2.1E-10 4.5E-15 125.9 12.5 226 186-465 413-666 (705)
146 KOG4328 WD40 protein [Function 99.1 1.2E-09 2.5E-14 119.4 17.0 100 346-461 298-399 (498)
147 KOG4328 WD40 protein [Function 99.1 1.2E-09 2.7E-14 119.2 17.1 233 72-461 197-450 (498)
148 KOG1272 WD40-repeat-containing 99.1 6.7E-11 1.4E-15 129.1 7.3 208 173-461 151-362 (545)
149 KOG1408 WD40 repeat protein [F 99.1 7.7E-09 1.7E-13 117.5 23.1 92 370-478 597-688 (1080)
150 KOG0650 WD40 repeat nucleolar 99.1 1.1E-09 2.5E-14 122.5 15.9 98 347-463 585-682 (733)
151 KOG1034 Transcriptional repres 99.1 5.7E-09 1.2E-13 110.2 19.6 102 75-222 106-214 (385)
152 KOG1034 Transcriptional repres 99.1 3.1E-09 6.8E-14 112.2 17.2 100 345-463 111-213 (385)
153 KOG1332 Vesicle coat complex C 99.1 1E-09 2.2E-14 111.9 13.0 101 344-462 121-242 (299)
154 COG2319 FOG: WD40 repeat [Gene 99.1 2.8E-07 6.1E-12 97.5 32.4 179 172-465 133-318 (466)
155 PRK01742 tolB translocation pr 99.1 3.4E-08 7.4E-13 112.2 26.5 78 373-473 336-415 (429)
156 KOG2048 WD40 repeat protein [G 99.1 1.8E-08 3.9E-13 114.6 22.8 189 172-474 46-246 (691)
157 KOG1007 WD repeat protein TSSC 99.0 1.5E-08 3.2E-13 105.5 19.1 246 74-462 75-362 (370)
158 KOG0650 WD40 repeat nucleolar 99.0 2.5E-08 5.5E-13 111.9 21.8 312 54-458 398-732 (733)
159 KOG0321 WD40 repeat-containing 99.0 6.3E-09 1.4E-13 117.4 16.8 113 346-475 237-362 (720)
160 PRK03629 tolB translocation pr 99.0 1.6E-07 3.4E-12 106.8 28.5 213 85-460 180-405 (429)
161 KOG0302 Ribosome Assembly prot 99.0 4.2E-08 9.1E-13 105.3 20.6 112 343-459 318-436 (440)
162 KOG1188 WD40 repeat protein [G 99.0 8.6E-09 1.9E-13 109.4 14.8 186 173-466 50-247 (376)
163 KOG0322 G-protein beta subunit 99.0 8.2E-09 1.8E-13 106.4 14.2 69 372-460 254-322 (323)
164 PRK05137 tolB translocation pr 99.0 6E-07 1.3E-11 102.2 30.2 204 86-452 184-397 (435)
165 KOG1063 RNA polymerase II elon 99.0 4.8E-08 1E-12 111.4 20.7 252 75-465 25-301 (764)
166 KOG0644 Uncharacterized conser 98.9 2.9E-09 6.3E-14 122.7 10.2 279 52-461 186-468 (1113)
167 COG2319 FOG: WD40 repeat [Gene 98.9 1.4E-06 3.1E-11 92.1 29.7 223 81-464 130-362 (466)
168 KOG2110 Uncharacterized conser 98.9 1.1E-06 2.4E-11 94.5 28.3 194 174-466 107-336 (391)
169 KOG0307 Vesicle coat complex C 98.9 2.9E-09 6.2E-14 126.9 9.7 101 344-462 179-285 (1049)
170 KOG0270 WD40 repeat-containing 98.9 4.2E-08 9E-13 107.2 17.7 129 52-232 239-374 (463)
171 KOG2109 WD40 repeat protein [G 98.9 1.3E-09 2.8E-14 123.4 6.4 315 74-473 251-588 (788)
172 KOG4378 Nuclear protein COP1 [ 98.9 3.5E-08 7.7E-13 108.7 16.8 207 75-443 91-305 (673)
173 KOG1273 WD40 repeat protein [G 98.9 5.5E-09 1.2E-13 109.8 10.0 129 342-471 38-193 (405)
174 KOG2111 Uncharacterized conser 98.9 2.3E-06 5E-11 90.7 28.6 119 344-465 198-326 (346)
175 KOG0290 Conserved WD40 repeat- 98.9 1.2E-07 2.5E-12 99.2 18.6 176 172-453 172-358 (364)
176 KOG0303 Actin-binding protein 98.9 3.2E-08 7E-13 106.7 14.6 107 344-470 149-258 (472)
177 KOG1445 Tumor-specific antigen 98.8 3.7E-08 8E-13 110.8 14.8 102 344-463 695-800 (1012)
178 KOG1587 Cytoplasmic dynein int 98.8 2.4E-07 5.3E-12 107.3 22.0 276 85-462 223-517 (555)
179 KOG1009 Chromatin assembly com 98.8 2.7E-08 5.9E-13 107.6 11.0 133 342-478 29-170 (434)
180 PRK02889 tolB translocation pr 98.8 3.2E-06 6.9E-11 96.2 28.0 72 372-464 330-404 (427)
181 KOG1188 WD40 repeat protein [G 98.8 1.4E-07 3E-12 100.4 15.5 105 74-223 39-155 (376)
182 KOG1517 Guanine nucleotide bin 98.8 6E-07 1.3E-11 106.4 21.4 103 344-462 1226-1334(1387)
183 KOG1007 WD repeat protein TSSC 98.7 6.8E-07 1.5E-11 93.4 19.2 103 346-467 190-295 (370)
184 PRK04922 tolB translocation pr 98.7 3.3E-06 7.3E-11 96.1 26.7 93 351-465 318-413 (433)
185 KOG0303 Actin-binding protein 98.7 6E-07 1.3E-11 97.1 18.7 129 52-231 77-215 (472)
186 KOG0290 Conserved WD40 repeat- 98.7 6.2E-07 1.3E-11 93.8 17.4 104 344-465 214-322 (364)
187 KOG1063 RNA polymerase II elon 98.7 3.6E-08 7.9E-13 112.3 8.7 99 349-463 552-650 (764)
188 KOG1445 Tumor-specific antigen 98.7 2.5E-08 5.4E-13 112.2 7.3 100 343-462 644-751 (1012)
189 KOG1963 WD40 repeat protein [G 98.7 2.7E-06 5.8E-11 99.8 23.9 107 342-469 220-330 (792)
190 PRK11028 6-phosphogluconolacto 98.7 2.4E-06 5.1E-11 93.2 22.6 104 348-465 101-209 (330)
191 KOG0321 WD40 repeat-containing 98.7 4.3E-07 9.3E-12 103.0 16.8 93 366-467 211-307 (720)
192 PF08662 eIF2A: Eukaryotic tra 98.7 9.7E-07 2.1E-11 89.9 17.5 127 173-399 37-178 (194)
193 KOG1963 WD40 repeat protein [G 98.7 2E-06 4.3E-11 100.8 22.0 231 173-464 37-284 (792)
194 KOG2445 Nuclear pore complex c 98.7 1.2E-06 2.5E-11 92.4 17.8 39 360-399 279-317 (361)
195 KOG1517 Guanine nucleotide bin 98.6 1.5E-06 3.1E-11 103.2 19.8 106 343-463 1273-1383(1387)
196 KOG1009 Chromatin assembly com 98.6 4.2E-06 9.2E-11 91.0 21.7 93 350-462 262-373 (434)
197 KOG0771 Prolactin regulatory e 98.6 5.4E-07 1.2E-11 98.2 15.0 74 370-462 282-355 (398)
198 PF08662 eIF2A: Eukaryotic tra 98.6 3.3E-07 7.1E-12 93.3 12.7 93 345-461 79-179 (194)
199 KOG3881 Uncharacterized conser 98.6 2.3E-06 5E-11 92.6 19.4 105 343-466 220-325 (412)
200 PRK01742 tolB translocation pr 98.6 1.4E-06 3.1E-11 99.0 18.1 89 351-462 274-362 (429)
201 PRK00178 tolB translocation pr 98.6 4.4E-05 9.5E-10 86.6 29.0 51 173-223 223-279 (430)
202 KOG0642 Cell-cycle nuclear pro 98.5 2.1E-07 4.5E-12 104.3 9.4 111 342-462 309-427 (577)
203 TIGR02800 propeller_TolB tol-p 98.5 2.7E-05 5.8E-10 87.4 25.6 86 350-457 303-390 (417)
204 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00026 5.7E-09 78.4 31.9 99 347-465 213-334 (352)
205 PRK05137 tolB translocation pr 98.5 2.4E-05 5.2E-10 89.1 24.3 90 350-460 271-365 (435)
206 KOG0771 Prolactin regulatory e 98.5 5.9E-07 1.3E-11 97.9 9.8 130 342-473 159-324 (398)
207 PRK04922 tolB translocation pr 98.5 1.9E-05 4.1E-10 89.9 22.5 93 349-462 272-369 (433)
208 PF10282 Lactonase: Lactonase, 98.5 0.00032 7E-09 77.5 31.6 84 371-469 246-330 (345)
209 KOG2394 WD40 protein DMR-N9 [G 98.4 2.3E-07 5.1E-12 103.4 5.7 98 361-478 282-379 (636)
210 KOG2139 WD40 repeat protein [G 98.4 1.4E-05 3E-10 86.1 18.6 98 348-466 217-314 (445)
211 PRK03629 tolB translocation pr 98.4 2.8E-05 6E-10 88.6 22.7 94 350-462 268-364 (429)
212 KOG1524 WD40 repeat-containing 98.4 7.4E-06 1.6E-10 91.5 16.9 202 75-455 75-280 (737)
213 KOG0322 G-protein beta subunit 98.4 3.6E-06 7.8E-11 87.3 12.5 56 343-399 267-322 (323)
214 KOG0649 WD40 repeat protein [G 98.4 0.00011 2.4E-09 75.7 22.8 65 173-237 136-204 (325)
215 PRK02889 tolB translocation pr 98.4 3E-05 6.5E-10 88.2 21.1 93 351-462 266-361 (427)
216 KOG0649 WD40 repeat protein [G 98.4 1.2E-05 2.6E-10 82.5 15.9 108 344-465 131-239 (325)
217 PRK04792 tolB translocation pr 98.4 0.00028 6.1E-09 80.9 29.0 51 173-223 242-298 (448)
218 KOG2394 WD40 protein DMR-N9 [G 98.3 1E-06 2.2E-11 98.4 8.0 71 326-401 293-363 (636)
219 PF00400 WD40: WD domain, G-be 98.3 1.1E-06 2.5E-11 65.0 5.4 38 360-398 2-39 (39)
220 KOG1310 WD40 repeat protein [G 98.3 2.7E-05 5.8E-10 87.4 18.2 79 98-222 43-128 (758)
221 PRK01029 tolB translocation pr 98.3 0.00028 6.1E-09 80.5 26.8 80 362-461 319-403 (428)
222 TIGR02800 propeller_TolB tol-p 98.2 0.00013 2.9E-09 81.8 22.8 93 349-462 258-355 (417)
223 KOG0642 Cell-cycle nuclear pro 98.2 1.3E-05 2.9E-10 90.2 13.7 56 344-400 506-561 (577)
224 KOG1538 Uncharacterized conser 98.2 3E-06 6.5E-11 96.3 8.5 144 194-459 14-160 (1081)
225 KOG1587 Cytoplasmic dynein int 98.2 3.1E-05 6.6E-10 90.1 16.8 101 344-463 365-474 (555)
226 KOG1538 Uncharacterized conser 98.2 7.6E-05 1.7E-09 85.3 18.9 257 74-462 23-294 (1081)
227 COG2706 3-carboxymuconate cycl 98.2 0.0034 7.4E-08 68.2 30.6 85 369-469 243-329 (346)
228 KOG4227 WD40 repeat protein [G 98.2 9.8E-05 2.1E-09 80.0 18.6 70 373-462 248-323 (609)
229 PF02239 Cytochrom_D1: Cytochr 98.1 0.00043 9.3E-09 77.5 23.9 176 173-464 16-205 (369)
230 PRK04792 tolB translocation pr 98.1 0.00026 5.7E-09 81.1 21.9 94 350-465 287-384 (448)
231 KOG0644 Uncharacterized conser 98.1 1.1E-06 2.4E-11 102.0 1.7 96 342-461 205-300 (1113)
232 KOG1272 WD40-repeat-containing 98.1 7.6E-06 1.7E-10 90.3 8.1 181 173-471 231-417 (545)
233 PRK00178 tolB translocation pr 98.1 0.00068 1.5E-08 76.9 23.6 92 350-462 268-364 (430)
234 KOG1310 WD40 repeat protein [G 98.1 9.2E-06 2E-10 91.0 8.0 83 362-463 43-127 (758)
235 KOG2919 Guanine nucleotide-bin 98.0 9.4E-05 2E-09 78.8 14.5 185 73-399 168-366 (406)
236 KOG1240 Protein kinase contain 98.0 0.00078 1.7E-08 82.0 23.8 111 348-465 1216-1338(1431)
237 KOG3881 Uncharacterized conser 98.0 0.00028 6.1E-09 76.9 17.6 57 344-401 264-321 (412)
238 KOG0974 WD-repeat protein WDR6 98.0 0.00013 2.9E-09 87.2 16.4 103 344-468 192-295 (967)
239 PRK04043 tolB translocation pr 98.0 0.0092 2E-07 68.0 30.3 49 174-222 214-268 (419)
240 KOG0974 WD-repeat protein WDR6 97.9 3.4E-05 7.4E-10 92.1 10.2 98 343-461 149-246 (967)
241 KOG1354 Serine/threonine prote 97.9 0.00087 1.9E-08 72.2 19.4 78 369-462 272-360 (433)
242 KOG2139 WD40 repeat protein [G 97.9 5.8E-05 1.3E-09 81.4 10.3 77 366-462 193-269 (445)
243 PF02239 Cytochrom_D1: Cytochr 97.9 0.00013 2.9E-09 81.5 13.8 103 346-469 13-116 (369)
244 PF10282 Lactonase: Lactonase, 97.9 0.021 4.6E-07 63.1 30.5 104 350-466 167-280 (345)
245 KOG2315 Predicted translation 97.9 0.00083 1.8E-08 76.1 19.0 128 172-399 250-389 (566)
246 PRK01029 tolB translocation pr 97.8 0.0013 2.8E-08 75.1 20.7 76 371-462 282-360 (428)
247 KOG2321 WD40 repeat protein [G 97.8 0.0014 3E-08 74.5 19.7 206 188-465 129-347 (703)
248 KOG1334 WD40 repeat protein [G 97.7 0.00035 7.6E-09 77.9 12.7 297 51-460 137-465 (559)
249 PF00400 WD40: WD domain, G-be 97.7 0.00014 3E-09 53.6 6.6 37 421-459 3-39 (39)
250 KOG4547 WD40 repeat-containing 97.6 0.0042 9E-08 71.0 20.3 97 344-462 119-221 (541)
251 KOG1409 Uncharacterized conser 97.6 0.0014 3E-08 70.7 15.2 220 171-464 44-273 (404)
252 KOG4547 WD40 repeat-containing 97.6 0.0026 5.6E-08 72.6 18.0 53 348-400 163-220 (541)
253 KOG4497 Uncharacterized conser 97.6 0.00097 2.1E-08 71.4 13.1 109 347-459 112-238 (447)
254 PLN02919 haloacid dehalogenase 97.6 0.05 1.1E-06 68.9 30.6 72 373-463 807-890 (1057)
255 COG4946 Uncharacterized protei 97.5 0.05 1.1E-06 61.1 25.8 162 40-263 281-464 (668)
256 PF04762 IKI3: IKI3 family; I 97.5 0.16 3.4E-06 63.6 33.4 97 349-463 237-335 (928)
257 KOG1240 Protein kinase contain 97.5 0.0015 3.2E-08 79.7 15.1 96 354-463 1034-1130(1431)
258 KOG2321 WD40 repeat protein [G 97.4 0.003 6.4E-08 71.9 15.5 115 348-473 154-269 (703)
259 PF13360 PQQ_2: PQQ-like domai 97.4 0.14 3.1E-06 52.4 27.2 94 345-463 128-232 (238)
260 KOG1524 WD40 repeat-containing 97.4 0.0016 3.4E-08 73.5 13.1 104 335-460 112-215 (737)
261 KOG1275 PAB-dependent poly(A) 97.3 0.0056 1.2E-07 72.9 16.8 185 172-462 156-343 (1118)
262 KOG1064 RAVE (regulator of V-A 97.3 0.00069 1.5E-08 85.0 9.6 88 347-466 2313-2403(2439)
263 KOG4497 Uncharacterized conser 97.3 0.0014 3E-08 70.2 10.6 89 345-453 67-155 (447)
264 KOG1523 Actin-related protein 97.3 0.0041 9E-08 66.6 13.8 100 346-461 74-176 (361)
265 KOG2314 Translation initiation 97.3 0.02 4.4E-07 65.2 19.7 290 74-462 221-526 (698)
266 KOG4227 WD40 repeat protein [G 97.2 0.0022 4.7E-08 69.9 11.2 105 342-464 71-182 (609)
267 KOG3914 WD repeat protein WDR4 97.1 0.0014 3.1E-08 71.8 7.9 99 347-466 130-228 (390)
268 smart00320 WD40 WD40 repeats. 97.1 0.0014 3.1E-08 45.0 5.5 39 359-398 2-40 (40)
269 COG2706 3-carboxymuconate cycl 97.1 0.18 3.9E-06 55.1 23.6 110 347-472 109-233 (346)
270 KOG2315 Predicted translation 97.0 0.24 5.2E-06 56.9 25.1 99 349-470 251-353 (566)
271 PRK04043 tolB translocation pr 97.0 0.097 2.1E-06 59.8 22.4 94 349-465 257-359 (419)
272 TIGR03300 assembly_YfgL outer 97.0 0.38 8.3E-06 53.5 26.9 57 173-229 115-173 (377)
273 PF11768 DUF3312: Protein of u 97.0 0.0046 9.9E-08 71.0 11.5 90 352-463 239-331 (545)
274 TIGR03300 assembly_YfgL outer 97.0 0.62 1.3E-05 51.8 28.5 91 345-458 285-376 (377)
275 TIGR02658 TTQ_MADH_Hv methylam 97.0 0.011 2.4E-07 65.6 13.8 97 349-464 27-139 (352)
276 KOG0280 Uncharacterized conser 96.9 0.0051 1.1E-07 65.3 10.2 105 344-466 138-246 (339)
277 KOG1912 WD40 repeat protein [G 96.8 0.021 4.6E-07 67.2 15.1 104 343-463 441-553 (1062)
278 KOG1523 Actin-related protein 96.8 0.0066 1.4E-07 65.1 10.2 102 344-462 27-131 (361)
279 COG5170 CDC55 Serine/threonine 96.7 0.1 2.2E-06 55.9 17.5 81 365-463 276-369 (460)
280 COG5354 Uncharacterized protei 96.6 0.21 4.6E-06 56.7 20.0 91 349-462 255-349 (561)
281 KOG1275 PAB-dependent poly(A) 96.6 0.049 1.1E-06 65.3 15.7 101 75-224 148-259 (1118)
282 PF03178 CPSF_A: CPSF A subuni 96.5 0.16 3.4E-06 55.5 18.8 97 349-463 107-204 (321)
283 KOG1334 WD40 repeat protein [G 96.5 0.017 3.7E-07 64.9 10.8 57 342-399 409-465 (559)
284 COG4946 Uncharacterized protei 96.4 0.035 7.5E-07 62.3 12.6 98 344-462 376-478 (668)
285 PF15492 Nbas_N: Neuroblastoma 96.4 0.27 5.9E-06 52.4 18.4 96 368-464 146-262 (282)
286 PF15492 Nbas_N: Neuroblastoma 96.4 0.7 1.5E-05 49.4 21.3 32 367-399 227-258 (282)
287 KOG1645 RING-finger-containing 96.3 0.0095 2.1E-07 65.6 7.6 96 351-467 175-272 (463)
288 COG5354 Uncharacterized protei 96.2 0.34 7.4E-06 55.2 19.0 155 172-453 254-421 (561)
289 PF03178 CPSF_A: CPSF A subuni 96.2 2.5 5.5E-05 46.1 25.9 50 173-222 62-118 (321)
290 KOG4415 Uncharacterized conser 96.2 0.0037 8E-08 62.0 3.2 52 666-720 6-58 (247)
291 PF04762 IKI3: IKI3 family; I 96.0 3.1 6.7E-05 52.4 28.4 77 367-461 302-379 (928)
292 KOG1832 HIV-1 Vpr-binding prot 96.0 0.0054 1.2E-07 72.7 3.6 122 52-228 1097-1223(1516)
293 KOG0309 Conserved WD40 repeat- 95.8 0.059 1.3E-06 63.3 11.3 105 74-222 35-148 (1081)
294 PF07433 DUF1513: Protein of u 95.5 4.7 0.0001 44.0 26.7 71 369-464 216-286 (305)
295 KOG4190 Uncharacterized conser 95.4 0.015 3.2E-07 65.9 4.3 85 361-460 727-811 (1034)
296 KOG4714 Nucleoporin [Nuclear s 95.4 0.036 7.9E-07 58.2 6.8 115 343-459 196-316 (319)
297 smart00320 WD40 WD40 repeats. 95.4 0.053 1.2E-06 36.8 5.8 29 431-459 12-40 (40)
298 KOG4532 WD40-like repeat conta 95.3 1.1 2.4E-05 47.7 17.0 80 371-465 205-286 (344)
299 PF07433 DUF1513: Protein of u 95.2 2 4.4E-05 46.9 19.5 94 348-463 137-249 (305)
300 KOG1064 RAVE (regulator of V-A 95.1 0.053 1.1E-06 69.1 8.0 119 344-467 2225-2372(2439)
301 KOG4532 WD40-like repeat conta 94.8 0.29 6.4E-06 51.8 11.4 101 346-465 135-237 (344)
302 KOG1912 WD40 repeat protein [G 94.8 0.37 7.9E-06 57.3 13.2 99 343-461 83-186 (1062)
303 KOG4190 Uncharacterized conser 94.5 0.13 2.9E-06 58.5 8.7 118 343-463 751-908 (1034)
304 PF13360 PQQ_2: PQQ-like domai 94.5 6.5 0.00014 40.1 23.0 57 173-229 86-150 (238)
305 KOG0280 Uncharacterized conser 94.3 0.13 2.9E-06 54.8 7.8 104 343-466 182-289 (339)
306 KOG2695 WD40 repeat protein [G 94.3 0.11 2.4E-06 56.5 7.2 103 344-462 269-377 (425)
307 PF00780 CNH: CNH domain; Int 94.3 8.4 0.00018 40.6 24.1 40 75-116 7-46 (275)
308 KOG2314 Translation initiation 94.3 0.36 7.8E-06 55.4 11.4 82 349-451 282-366 (698)
309 KOG0309 Conserved WD40 repeat- 94.2 0.2 4.3E-06 59.1 9.5 104 342-465 130-236 (1081)
310 KOG4640 Anaphase-promoting com 93.6 0.26 5.6E-06 57.5 8.9 76 371-468 22-99 (665)
311 KOG3914 WD repeat protein WDR4 93.5 1.2 2.6E-05 49.4 13.4 56 344-401 168-224 (390)
312 PF08450 SGL: SMP-30/Gluconola 93.4 11 0.00024 39.2 25.6 99 349-461 115-213 (246)
313 KOG2695 WD40 repeat protein [G 93.3 0.18 3.8E-06 55.0 6.4 110 346-473 231-344 (425)
314 PRK11138 outer membrane biogen 93.0 18 0.0004 40.5 23.7 56 172-227 214-282 (394)
315 PF12894 Apc4_WD40: Anaphase-p 92.9 0.25 5.3E-06 38.9 5.2 30 432-461 12-41 (47)
316 KOG3621 WD40 repeat-containing 92.7 0.35 7.6E-06 57.0 8.2 103 344-462 50-155 (726)
317 PLN02919 haloacid dehalogenase 92.4 1.4 3E-05 56.2 13.9 111 346-462 702-834 (1057)
318 COG0823 TolB Periplasmic compo 92.2 2.4 5.1E-05 48.7 14.1 50 173-222 218-273 (425)
319 PF08553 VID27: VID27 cytoplas 92.1 17 0.00036 44.9 21.8 55 344-400 593-647 (794)
320 KOG2066 Vacuolar assembly/sort 91.6 0.65 1.4E-05 55.5 8.8 96 343-468 53-153 (846)
321 KOG3617 WD40 and TPR repeat-co 91.4 0.42 9.2E-06 57.2 6.9 99 344-466 36-136 (1416)
322 COG0823 TolB Periplasmic compo 91.2 3.4 7.3E-05 47.4 14.1 84 350-452 263-346 (425)
323 KOG2114 Vacuolar assembly/sort 91.2 29 0.00063 42.5 21.7 50 348-400 192-243 (933)
324 KOG2041 WD40 repeat protein [G 90.6 0.48 1E-05 55.8 6.4 98 342-457 29-141 (1189)
325 PF11768 DUF3312: Protein of u 90.6 0.49 1.1E-05 54.9 6.5 57 343-402 275-331 (545)
326 KOG1354 Serine/threonine prote 90.4 0.77 1.7E-05 50.2 7.4 81 370-467 26-122 (433)
327 PRK02888 nitrous-oxide reducta 89.8 2.9 6.3E-05 49.8 12.0 115 346-464 212-354 (635)
328 PF14783 BBS2_Mid: Ciliary BBS 89.7 3.5 7.7E-05 38.4 10.1 65 372-460 2-70 (111)
329 KOG4714 Nucleoporin [Nuclear s 89.6 0.44 9.5E-06 50.3 4.6 95 349-462 159-255 (319)
330 KOG2066 Vacuolar assembly/sort 89.4 12 0.00026 45.3 16.6 46 172-217 92-144 (846)
331 KOG4640 Anaphase-promoting com 89.3 1.2 2.6E-05 52.1 8.2 58 342-401 35-93 (665)
332 PF12894 Apc4_WD40: Anaphase-p 88.5 1.1 2.5E-05 35.1 5.2 30 369-399 11-40 (47)
333 PF00780 CNH: CNH domain; Int 88.1 11 0.00023 39.9 14.1 48 182-229 216-265 (275)
334 KOG1645 RING-finger-containing 87.5 1.7 3.7E-05 48.4 7.6 51 172-222 215-269 (463)
335 PF08450 SGL: SMP-30/Gluconola 86.8 42 0.00091 34.8 29.8 60 371-451 185-245 (246)
336 PF00930 DPPIV_N: Dipeptidyl p 86.7 1.8 3.9E-05 48.1 7.5 103 348-465 22-135 (353)
337 PRK11138 outer membrane biogen 86.6 17 0.00037 40.8 15.5 54 172-226 265-319 (394)
338 KOG2395 Protein involved in va 86.4 44 0.00095 39.1 18.0 55 343-399 445-499 (644)
339 KOG1920 IkappaB kinase complex 85.9 56 0.0012 41.6 19.8 98 349-463 222-324 (1265)
340 KOG2079 Vacuolar assembly/sort 84.4 1.2 2.6E-05 54.9 4.9 75 379-473 97-172 (1206)
341 PF06433 Me-amine-dh_H: Methyl 83.8 2.3 5E-05 47.0 6.5 58 172-229 268-330 (342)
342 PF10313 DUF2415: Uncharacteri 83.6 2.9 6.4E-05 32.3 5.1 30 433-462 2-34 (43)
343 KOG1832 HIV-1 Vpr-binding prot 83.5 0.65 1.4E-05 56.0 2.2 100 343-464 1117-1217(1516)
344 KOG0882 Cyclophilin-related pe 82.6 4.8 0.0001 45.6 8.3 113 346-464 119-234 (558)
345 KOG2114 Vacuolar assembly/sort 82.1 6.3 0.00014 47.9 9.5 107 342-460 38-154 (933)
346 KOG2444 WD40 repeat protein [G 82.1 3 6.4E-05 43.6 6.0 104 344-467 75-183 (238)
347 cd00216 PQQ_DH Dehydrogenases 81.9 1.1E+02 0.0024 35.7 21.4 57 173-229 71-138 (488)
348 PF08596 Lgl_C: Lethal giant l 81.7 22 0.00048 40.4 13.5 87 371-461 3-115 (395)
349 PF14783 BBS2_Mid: Ciliary BBS 80.9 29 0.00063 32.4 11.5 87 343-456 19-109 (111)
350 KOG2079 Vacuolar assembly/sort 80.8 3.9 8.5E-05 50.7 7.4 57 344-401 104-161 (1206)
351 KOG1897 Damage-specific DNA bi 80.8 1.7E+02 0.0036 37.0 22.8 96 348-461 847-942 (1096)
352 PRK02888 nitrous-oxide reducta 80.7 13 0.00027 44.6 11.3 106 348-462 295-405 (635)
353 PF04053 Coatomer_WDAD: Coatom 79.5 1.3E+02 0.0028 34.9 19.0 58 381-462 117-174 (443)
354 COG3386 Gluconolactonase [Carb 78.8 1.1E+02 0.0024 33.7 21.1 52 348-400 142-193 (307)
355 PF05694 SBP56: 56kDa selenium 78.7 1.3E+02 0.0029 34.7 25.2 67 370-450 312-392 (461)
356 COG3490 Uncharacterized protei 77.8 1.1E+02 0.0023 33.5 16.0 54 175-229 51-109 (366)
357 PRK13616 lipoprotein LpqB; Pro 77.7 12 0.00025 44.9 10.1 93 349-462 379-477 (591)
358 PF10168 Nup88: Nuclear pore c 77.3 38 0.00083 41.6 14.4 92 370-466 85-184 (717)
359 COG3391 Uncharacterized conser 76.6 37 0.00081 38.2 13.3 95 347-462 94-191 (381)
360 COG5170 CDC55 Serine/threonine 76.3 5.8 0.00013 43.1 6.2 87 370-463 27-119 (460)
361 PF00930 DPPIV_N: Dipeptidyl p 76.2 1E+02 0.0022 34.2 16.5 50 173-222 23-74 (353)
362 KOG1409 Uncharacterized conser 75.9 13 0.00028 41.1 8.7 114 358-475 103-242 (404)
363 PF02897 Peptidase_S9_N: Proly 75.4 20 0.00044 40.3 10.9 112 332-461 132-258 (414)
364 KOG3617 WD40 and TPR repeat-co 72.9 5.9 0.00013 48.0 5.7 65 335-400 67-131 (1416)
365 PF08553 VID27: VID27 cytoplas 72.5 27 0.00058 43.2 11.3 96 346-459 501-604 (794)
366 PF10313 DUF2415: Uncharacteri 72.4 8.7 0.00019 29.8 4.7 31 370-401 1-34 (43)
367 PF07676 PD40: WD40-like Beta 72.0 12 0.00026 27.4 5.4 31 367-397 6-38 (39)
368 KOG2041 WD40 repeat protein [G 71.3 4.8 0.0001 47.9 4.5 95 344-461 88-186 (1189)
369 PF14781 BBS2_N: Ciliary BBSom 71.2 22 0.00048 34.4 8.2 53 173-225 20-87 (136)
370 PF08596 Lgl_C: Lethal giant l 70.3 30 0.00065 39.4 10.6 83 361-462 78-174 (395)
371 PF14781 BBS2_N: Ciliary BBSom 70.2 47 0.001 32.1 10.2 58 171-228 71-134 (136)
372 PF07676 PD40: WD40-like Beta 69.9 9.9 0.00022 27.8 4.5 26 433-458 10-38 (39)
373 PF14870 PSII_BNR: Photosynthe 67.8 25 0.00055 38.5 9.0 70 369-459 144-213 (302)
374 COG3391 Uncharacterized conser 67.7 72 0.0016 35.9 13.0 94 347-462 138-240 (381)
375 PF02897 Peptidase_S9_N: Proly 67.3 25 0.00055 39.5 9.3 63 371-453 125-191 (414)
376 PF12234 Rav1p_C: RAVE protein 66.2 61 0.0013 39.1 12.3 102 348-460 50-155 (631)
377 PF14727 PHTB1_N: PTHB1 N-term 65.4 2.6E+02 0.0056 32.2 28.8 52 171-222 95-166 (418)
378 PF02333 Phytase: Phytase; In 62.3 53 0.0012 37.2 10.3 26 565-590 217-242 (381)
379 PF04841 Vps16_N: Vps16, N-ter 61.6 2.9E+02 0.0063 31.5 24.9 48 172-220 60-110 (410)
380 PRK13616 lipoprotein LpqB; Pro 61.0 42 0.0009 40.3 9.8 98 348-465 429-529 (591)
381 COG3386 Gluconolactonase [Carb 60.1 68 0.0015 35.3 10.6 78 371-466 112-198 (307)
382 PF05096 Glu_cyclase_2: Glutam 58.0 57 0.0012 35.1 9.2 57 172-228 109-166 (264)
383 PF08728 CRT10: CRT10; InterP 57.1 3.8E+02 0.0082 33.0 16.8 75 370-461 164-246 (717)
384 PF05694 SBP56: 56kDa selenium 56.9 1.5E+02 0.0033 34.3 12.7 107 346-465 219-346 (461)
385 smart00036 CNH Domain found in 54.7 1.2E+02 0.0025 33.2 11.3 38 76-115 14-52 (302)
386 smart00036 CNH Domain found in 54.7 2.3E+02 0.005 30.8 13.7 43 187-229 238-280 (302)
387 PF12657 TFIIIC_delta: Transcr 53.5 1E+02 0.0022 30.7 9.8 30 433-462 87-122 (173)
388 PF10647 Gmad1: Lipoprotein Lp 52.7 1.6E+02 0.0036 31.1 11.8 75 371-462 67-145 (253)
389 KOG1920 IkappaB kinase complex 52.2 63 0.0014 41.2 9.4 69 369-458 68-136 (1265)
390 KOG1916 Nuclear protein, conta 52.0 11 0.00025 46.1 3.0 108 345-467 201-329 (1283)
391 PF14583 Pectate_lyase22: Olig 51.4 4.2E+02 0.0091 30.2 19.7 41 171-211 166-209 (386)
392 PF06977 SdiA-regulated: SdiA- 51.3 1.7E+02 0.0037 31.1 11.6 83 364-466 16-99 (248)
393 cd00216 PQQ_DH Dehydrogenases 49.9 4.8E+02 0.01 30.4 25.2 58 172-229 174-274 (488)
394 PF06433 Me-amine-dh_H: Methyl 49.9 56 0.0012 36.4 7.8 51 350-401 270-321 (342)
395 PF12234 Rav1p_C: RAVE protein 49.5 1.5E+02 0.0032 35.9 11.8 74 370-462 30-105 (631)
396 PF14655 RAB3GAP2_N: Rab3 GTPa 49.4 1E+02 0.0022 35.5 10.0 40 361-401 299-338 (415)
397 TIGR02276 beta_rpt_yvtn 40-res 48.6 94 0.002 22.5 6.7 23 379-401 1-23 (42)
398 PRK10115 protease 2; Provision 48.5 2.8E+02 0.006 34.1 14.2 96 349-462 153-256 (686)
399 KOG2395 Protein involved in va 45.2 83 0.0018 36.9 8.3 99 347-460 354-458 (644)
400 PF01731 Arylesterase: Arylest 44.8 96 0.0021 27.6 7.1 50 348-400 35-84 (86)
401 KOG1008 Uncharacterized conser 43.8 9 0.0002 45.3 0.6 92 347-460 127-224 (783)
402 PF04053 Coatomer_WDAD: Coatom 42.4 55 0.0012 37.9 6.6 49 347-399 124-172 (443)
403 KOG3621 WD40 repeat-containing 42.0 46 0.001 40.0 5.9 80 368-467 32-111 (726)
404 PF04841 Vps16_N: Vps16, N-ter 40.5 1.9E+02 0.0042 33.0 10.6 39 420-461 71-109 (410)
405 KOG1898 Splicing factor 3b, su 40.3 5E+02 0.011 33.3 14.2 99 86-232 914-1018(1205)
406 KOG4649 PQQ (pyrrolo-quinoline 39.3 5.4E+02 0.012 28.0 13.4 55 173-228 33-90 (354)
407 PF12657 TFIIIC_delta: Transcr 39.1 2.7E+02 0.0058 27.6 10.2 26 435-462 8-33 (173)
408 KOG4649 PQQ (pyrrolo-quinoline 38.4 5.6E+02 0.012 27.9 16.9 102 344-468 28-130 (354)
409 KOG1008 Uncharacterized conser 37.4 13 0.00029 44.0 0.6 105 344-462 75-185 (783)
410 KOG4460 Nuclear pore complex, 37.1 1.2E+02 0.0026 35.6 8.0 83 371-463 105-200 (741)
411 PF14761 HPS3_N: Hermansky-Pud 36.2 1.2E+02 0.0026 31.7 7.2 44 391-452 37-80 (215)
412 PRK13684 Ycf48-like protein; P 35.9 1.5E+02 0.0032 32.8 8.6 67 369-456 172-238 (334)
413 PF10647 Gmad1: Lipoprotein Lp 35.9 1.8E+02 0.004 30.7 9.0 67 371-459 25-93 (253)
414 PF05787 DUF839: Bacterial pro 35.7 78 0.0017 37.5 6.6 28 421-448 491-518 (524)
415 KOG2444 WD40 repeat protein [G 34.7 41 0.00089 35.4 3.6 57 344-401 119-178 (238)
416 PF07569 Hira: TUP1-like enhan 33.6 2E+02 0.0042 30.0 8.5 75 377-462 18-96 (219)
417 PF07569 Hira: TUP1-like enhan 33.4 1.2E+02 0.0027 31.5 7.0 52 346-399 29-94 (219)
418 PF12341 DUF3639: Protein of u 33.4 82 0.0018 22.1 3.7 25 433-459 3-27 (27)
419 PF07250 Glyoxal_oxid_N: Glyox 33.1 1.2E+02 0.0026 32.3 6.9 90 350-452 47-138 (243)
420 smart00564 PQQ beta-propeller 31.4 1E+02 0.0022 21.3 4.2 24 204-227 9-32 (33)
421 KOG1898 Splicing factor 3b, su 30.9 1.3E+03 0.028 29.9 19.3 94 349-462 954-1049(1205)
422 PF03088 Str_synth: Strictosid 30.5 1.3E+02 0.0029 26.9 5.7 45 344-389 32-76 (89)
423 TIGR03075 PQQ_enz_alc_DH PQQ-d 30.3 1.6E+02 0.0035 34.8 8.1 57 173-229 441-500 (527)
424 PF11715 Nup160: Nucleoporin N 29.9 2.1E+02 0.0045 33.8 9.0 33 433-465 216-252 (547)
425 PF03022 MRJP: Major royal jel 29.9 2.1E+02 0.0045 31.1 8.3 57 173-229 34-106 (287)
426 PF01436 NHL: NHL repeat; Int 27.0 1.1E+02 0.0024 21.0 3.7 25 434-458 4-28 (28)
427 KOG1916 Nuclear protein, conta 26.5 32 0.00069 42.5 1.3 28 439-466 243-270 (1283)
428 PF13570 PQQ_3: PQQ-like domai 26.0 1.2E+02 0.0027 22.2 4.1 35 186-220 4-40 (40)
429 PF03022 MRJP: Major royal jel 26.0 8.6E+02 0.019 26.3 13.7 107 350-462 35-160 (287)
430 COG5422 ROM1 RhoGEF, Guanine n 25.3 4.4E+02 0.0095 33.1 10.2 111 75-232 1018-1138(1175)
431 PF01731 Arylesterase: Arylest 25.0 1.1E+02 0.0024 27.3 4.1 28 435-462 57-85 (86)
432 PRK10115 protease 2; Provision 24.4 3.3E+02 0.0072 33.4 9.6 71 371-462 128-208 (686)
433 COG3490 Uncharacterized protei 23.2 3.2E+02 0.0069 30.1 7.8 72 374-462 72-149 (366)
434 PF01011 PQQ: PQQ enzyme repea 22.9 1.2E+02 0.0026 22.2 3.4 24 207-230 6-29 (38)
435 PF06977 SdiA-regulated: SdiA- 22.8 6.3E+02 0.014 26.9 10.2 47 172-219 43-94 (248)
436 KOG2377 Uncharacterized conser 22.4 2.3E+02 0.005 32.9 6.9 73 369-462 66-141 (657)
437 KOG0183 20S proteasome, regula 22.0 56 0.0012 33.9 1.9 24 569-592 7-32 (249)
438 PF10214 Rrn6: RNA polymerase 21.9 4.1E+02 0.0089 33.0 9.8 79 370-463 146-234 (765)
439 KOG1897 Damage-specific DNA bi 21.5 1.8E+03 0.039 28.4 26.2 101 345-463 505-615 (1096)
440 PF03088 Str_synth: Strictosid 21.3 3.8E+02 0.0083 24.0 6.9 16 434-449 59-74 (89)
441 PLN00033 photosystem II stabil 20.4 3.8E+02 0.0083 30.6 8.4 63 372-456 241-304 (398)
442 TIGR02608 delta_60_rpt delta-6 20.3 2.3E+02 0.005 23.1 4.8 32 434-465 3-39 (55)
443 PF14583 Pectate_lyase22: Olig 20.0 5.2E+02 0.011 29.5 9.1 91 355-464 16-113 (386)
No 1
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.9e-59 Score=515.02 Aligned_cols=628 Identities=30% Similarity=0.358 Sum_probs=472.3
Q ss_pred CCchhhhhhceeeeeccCCcceeeeccccccccceecccCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEc
Q 004255 12 LPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDV 91 (765)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv 91 (765)
+|+|||+||.|+|+.|+|+.+++ .|++++.+.+.++++||++|++||+ .+...++||++++.+||||||.
T Consensus 1 ~p~s~~~vs~c~k~~ssg~~~~~-------~s~~~~~ss~~~e~~dqvlw~~fD~---~~~~~~~Vlll~~~~gfqv~d~ 70 (788)
T KOG2109|consen 1 MPPSANSVSGCKKKNSSGHQRPQ-------QSHQQTQSSPLPEEEDQVLWIKFDP---KPEVLEEVLLLNREEGFQVVDE 70 (788)
T ss_pred CCcccchhccchhhcccccccHH-------HHHHhhcCCCChhhhccccccccCC---chhHHHHHHHHhhccCceEEee
Confidence 59999999999999997777665 4577777888899999999999995 2455789999999999999999
Q ss_pred cCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCC-cCCCCCCCCC
Q 004255 92 EDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGM-MDSQSGNCVN 170 (765)
Q Consensus 92 ~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~-~~~~~~~~~~ 170 (765)
++..++++..+.+|+++.+++|+++|+.+...++|++++|++|+|... .+++ .....++|. .+.
T Consensus 71 ~Dsp~vh~~vs~~dd~~~f~sm~~~pl~sg~~~gf~ss~avpavv~~t---~S~p-----~I~~S~~Gse~d~------- 135 (788)
T KOG2109|consen 71 TDSPTVHKEVSISDDLLDFSSMDKSPLSSGPDSGFESSDAVPAVVRTT---TSPP-----TIPPSQTGSEQDS------- 135 (788)
T ss_pred ccCCccceeeeecCCcceecccCCCCccCCCCCccccCCceeeecccc---cCCC-----cCCCCCCcceecc-------
Confidence 999999999999999999999999999999889999999999986522 2221 011224444 221
Q ss_pred CCCEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccccee
Q 004255 171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM 250 (765)
Q Consensus 171 ~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~ 250 (765)
.+....++|+++..++|.|+|+ +|+|||+.|++..+.+.+++.|+. ..+++|+++
T Consensus 136 t~an~~v~dl~S~~yah~l~fR-------------------qi~CfDa~tle~d~~~~~n~~p~l------~l~VGYGpl 190 (788)
T KOG2109|consen 136 TQANEMVVDLMSLDYAHALPFR-------------------QIHCFDAPTLEIDSMNTINTKPRL------LLSVGYGPL 190 (788)
T ss_pred cccccceeccccccchhccccc-------------------ccccccCcccCCchhhcccccccc------ceeeccccc
Confidence 2356788999999999999996 899999999999999988887743 235679999
Q ss_pred EEccceEEEecCCceecCCccccCCCCCC-CCCCCCcCCCCCcceeeehhhhhhhhhcccc-------eeecccccccCC
Q 004255 251 AVGPRWLAYASNTLLLSNSGRLSPQNLTP-SGVSPSTSPGGSSLVARYAMEHSKQFAAGLS-------KTLSKYCQELLP 322 (765)
Q Consensus 251 Alspr~LAyas~~~~~~~~G~~s~~~lt~-~~~s~s~sp~~gslva~~a~d~~k~la~G~~-------ktls~~~~~~~p 322 (765)
++++||+||++.....+. .+..+. ..+++++++-++-.+|+||+|.+|+++.|+. +++++||++.++
T Consensus 191 aVg~rWaaya~~~a~~vs-----s~~Vt~~~~VspttSs~~~~~va~~A~essk~lA~gl~nlgDkGy~~isglc~g~~~ 265 (788)
T KOG2109|consen 191 AVGRRWAAYAQTLANQVS-----SHLVTMGMSVSPTTSSQITAEVAEWAQESSKELAGGLVNLGDKGYVLISGLCRGSYQ 265 (788)
T ss_pred cceeeeeeeccCcchhhh-----hccccccccccCCCCCchhHHHHHhhhhhhHHHhhhhcccccchHHHHHHHhhcccC
Confidence 999999999987543221 234455 6778888888888899999999999999965 688999998776
Q ss_pred CCCCCCccCCCccccccccccccC-CCCe--EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255 323 DGSSSPVSPNSVWKVGRHAGADMD-NAGI--VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (765)
Q Consensus 323 ~~s~~~~s~s~~~~~~~~~~~~~~-~dG~--V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi 399 (765)
.+......-......+....+++. .-|+ +.+-|+.+...+.+|++|+++|++|+|+++|.+|++++..|+.|++|.+
T Consensus 266 ~g~gpglgg~~~~~vGrvg~vsaesV~g~~~vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRi 345 (788)
T KOG2109|consen 266 IGTGPGLGGFEEVLVGRVGPVSAESVLGNNLVIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRI 345 (788)
T ss_pred CCCCCCCCCcCceeccccccccceeecccceEEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEe
Confidence 543322221111111111112222 2455 8888999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccCCCCCC
Q 004255 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDP 479 (765)
Q Consensus 400 ~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~~~~~~ 479 (765)
++..+....+.++++|+ .||.+.+.|++|+|+.+.+|++.+|.+|+= |
T Consensus 346 met~~t~~~~~qs~~~s---------~ra~t~aviqdicfs~~s~~r~~gsc~Ge~-----------------------P 393 (788)
T KOG2109|consen 346 METVCTVNVSDQSLVVS---------PRANTAAVIQDICFSEVSTIRTAGSCEGEP-----------------------P 393 (788)
T ss_pred ccccccccccccccccc---------hhcchHHHHHHHhhhhhcceEeecccCCCC-----------------------c
Confidence 88644333333332221 478888899999999999999999955542 4
Q ss_pred ccccccCCCcccCCCCCccCCcCCCCCCeeeeeeeeeeeCCCCcccccccccccccCccccccceeeeecccCccccccc
Q 004255 480 YLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQH 559 (765)
Q Consensus 480 ~~~p~~~l~~~~~s~~~~~q~~~~~~~~~~l~~~~~i~~~~~~w~~~~~~~~~~a~~~~~~p~~~v~~~f~~~~~~~~~~ 559 (765)
.+.+...+|||-.+++...-+..+.+.+.+|...++++..+. | ++++-.++.-.|...-..+|+.......
T Consensus 394 ~ls~t~~lp~~A~~Sl~~gl~s~g~~aa~gla~~sag~~a~s----~---~asSv~s~s~~pd~ks~gv~~gsv~k~~-- 464 (788)
T KOG2109|consen 394 ALSLTCQLPAYADTSLDLGLQSSGGLAAEGLATSSAGYTAHS----Y---TASSVFSRSVKPDSKSVGVGSGSVTKAN-- 464 (788)
T ss_pred ccccccccchhhchhhhccccccCcccceeeeeccccccccc----c---ccceeeccccccchhhccceeeeccccC--
Confidence 566777899999999988777778788888888887776532 1 1222223334566666777877643211
Q ss_pred cccccCccccEEEEcCCc-cEEEEecccCCCCCCCCC-CCcccccccccccCCc-eeEeeccccceeeeccCCCcccccc
Q 004255 560 VNSRTNSLEHLLVYTPSG-YVVQHELLPSIGMGPSDD-GSRIRAASLMCLQEDD-LQVRVEPVQWWDVCRRSDWPEREEF 636 (765)
Q Consensus 560 ~~~~~~~~~~Llv~s~~G-~l~~y~l~p~~g~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~w~~~r~~~~~e~~~~ 636 (765)
...+..+..|||+.|.| +++||-|.+.+++.-.+. ....+-.+ +...+++ .++.|+|.+.|+.|++-+|+|++++
T Consensus 465 -q~~~~~l~~llv~~psGd~vvqh~vahs~~gv~~Ef~~~~~l~lS-ad~~e~ef~~f~V~Ph~~wsslaav~hly~l~r 542 (788)
T KOG2109|consen 465 -QGVITVLNLLLVGEPSGDGVVQHYVAHSDPGVYIEFSPDQRLVLS-ADANENEFNIFLVMPHATWSSLAAVQHLYKLNR 542 (788)
T ss_pred -ccchhhhhheeeecCCCCceeEEEeeccCccceeeecccccceec-ccccccccceEEeecccccHHHhhhhhhhhccC
Confidence 13345588899999999 999999999998765544 33333332 3445677 9999999999999999999999997
Q ss_pred ccccccCCCCceeeecccccCCCCCCCcccccccceecccccccCCCCccccceeEeeeeeEEeccCCccccccceeEEE
Q 004255 637 ISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFF 716 (765)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~s~~e~~~~~~~~~~w~~~~~~f~ 716 (765)
|.|.. +.+ .....++....- + +. +...+.-+.+|-|+-++|+++|.. +|||+|.+ .||
T Consensus 543 --G~Tsa-----Kv~-~~afs~dsrw~A---~--------~t-~~~TthVfk~hpYgg~aeqrth~~-lp~vnk~s-rFh 600 (788)
T KOG2109|consen 543 --GSTSA-----KVV-STAFSEDSRWLA---I--------TT-NHATTHVFKVHPYGGKAEQRTHGD-LPFVNKES-RFH 600 (788)
T ss_pred --CCccc-----eee-eeEeecchhhhh---h--------hh-cCCceeeeeeccccccccceecCC-chhccchh-hhc
Confidence 44333 111 111111100000 0 00 124567789999999999999999 99999999 999
Q ss_pred EcCCccc------cCCCCCceEEEEeeceeeeeeccCccccccccccccc
Q 004255 717 KMDSPRA------NTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKP 760 (765)
Q Consensus 717 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 760 (765)
-|...+. +...++|.||+++.++++|+|+|||+|+++ .++.++
T Consensus 601 rsagl~~d~~~~~s~ggg~e~ei~~~~~~t~e~r~~dllPvy~-~tS~rs 649 (788)
T KOG2109|consen 601 RSAGLTDDADVTASIGGGKEREIADSCSYTKEHRIADLLPVYA-KTSGRS 649 (788)
T ss_pred cccCCCccccccccCCCCccceecccccccccccccccCCccc-ccCccc
Confidence 9998543 455667999999999999999999999999 455444
No 2
>PF12490 BCAS3: Breast carcinoma amplified sequence 3 ; InterPro: IPR022175 This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length. The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer.
Probab=100.00 E-value=2.2e-54 Score=452.24 Aligned_cols=238 Identities=47% Similarity=0.744 Sum_probs=202.6
Q ss_pred CCCeeeeeeeeeeeCC-CCcccccccccccccC-ccccccceeeeecccCccccccccccc-cCccccEEEEcCCccEEE
Q 004255 505 PPPVTLSVVSRIKYSS-FGWLNTVSNASASSMG-KVFVPSGAVAAVFHNSIAHSSQHVNSR-TNSLEHLLVYTPSGYVVQ 581 (765)
Q Consensus 505 ~~~~~l~~~~~i~~~~-~~w~~~~~~~~~~a~~-~~~~p~~~v~~~f~~~~~~~~~~~~~~-~~~~~~Llv~s~~G~l~~ 581 (765)
|+|++|+||+|||+++ +||+|+++++++++++ +.+.+++++|+.||++......+...+ ...+++|||++|+|+|+|
T Consensus 1 P~Pv~l~~vsrIK~~~~~g~~~tv~~aassa~g~~~~~~sga~a~~f~~~~~~~~~~~~~~~~~~~~~LlV~spsG~Liq 80 (251)
T PF12490_consen 1 PPPVTLSVVSRIKQGNTLGWLNTVSNAASSATGGKPSSVSGAFASSFHNSKGSSSEPSDSSSSKAVESLLVFSPSGHLIQ 80 (251)
T ss_pred CCCEEechHHhhcCCccccccccccccccchhcCCcccceeEEccccccCCCCcccccccccccccceEEEECCCCcEEE
Confidence 6799999999999998 8999999999999888 889999999999999866555544343 688999999999999999
Q ss_pred EecccCCCCCCCCCCCcccccccccccCCceeEeeccccceeeeccCCCccccc-cccccccCCCCceeeecccccCCC-
Q 004255 582 HELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREE-FISEATCDGHGAVEIFQNKSDCED- 659 (765)
Q Consensus 582 y~l~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~r~~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~- 659 (765)
|+|+|+.+++....+++.+++....++|++|||+|||+|||||||+.+|+||++ ++.+...+++.... .++++++
T Consensus 81 y~L~p~~~~~~~~~~~~~~~~~~~~~~~~~l~l~vep~~~Wdl~R~~~w~e~~~d~~~~~~~~~~~~~~---~~~~~~~~ 157 (251)
T PF12490_consen 81 YELRPSPGSDPTEGGSGNGPPSESQMDDTELRLVVEPVQQWDLCRRPNWPEREEDCVPPLPENNPLDSA---SKIDPSDC 157 (251)
T ss_pred EEEeeccccCcccccccccCccccccccCcceEEeeeccceeEeccccCCccchhccCCCCCCCHhhhh---hhcccccc
Confidence 999999999988888888888766667799999999999999999999999999 55544344443322 2444444
Q ss_pred CCCCcccccccceecccccccCCCCccccceeEeeeeeEEeccCC-ccccccceeEEEEcCCccc-----cCCCC--Cce
Q 004255 660 NYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGR-LPIWQSSKISFFKMDSPRA-----NTHAS--GEF 731 (765)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~s~~e~~~~~~~-~~~w~~~~~~f~~~~~~~~-----~~~~~--~~~ 731 (765)
.++++.++++.+.+.+. +++++|++||||||||||||+++ +||||||||+||+|.++.. ++..+ |||
T Consensus 158 ~~~~~~~~~~~~~~~~~-----~~~~~e~~~~wlS~vEi~th~~phrpLW~gpQf~F~~~~~~~~~~~~~s~~~~~~~e~ 232 (251)
T PF12490_consen 158 RKGNSVNPSNDSYVSKE-----SDSPEERDHWWLSNVEIQTHSGPHRPLWMGPQFSFKTMSSPSSSELNISSSSGEAGEI 232 (251)
T ss_pred cccCCcccccccccccc-----CCCcccccCcEEeeeeeEeccCCccccccCCcEEEEEecCCCCccccccccccccCce
Confidence 34677788877666555 78899999999999999999999 8999999999999998652 45566 999
Q ss_pred EEEEeeceeeeeeccCccc
Q 004255 732 EIEKVSVHEVEIKRKELLP 750 (765)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~p 750 (765)
||||||+|+||+|||||||
T Consensus 233 EIE~~~~~~ve~r~k~l~p 251 (251)
T PF12490_consen 233 EIEKIPTREVEIRRKDLLP 251 (251)
T ss_pred eeccccccceeeeccccCC
Confidence 9999999999999999998
No 3
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=7.1e-48 Score=404.57 Aligned_cols=325 Identities=27% Similarity=0.439 Sum_probs=278.7
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCE
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpL 132 (765)
++.+..+.+.+|++ +..+|.+|..+|+++|.+++.+ +..+...+.+.+|+|| |+++ |
T Consensus 2 ~~~~~ti~~~~~Nq-------d~~~lsvGs~~Gyk~~~~~~~~---k~~~~~~~~~~IvEmL-----------FSSS--L 58 (391)
T KOG2110|consen 2 NGKKPTINFIGFNQ-------DSTLLSVGSKDGYKIFSCSPFE---KCFSKDTEGVSIVEML-----------FSSS--L 58 (391)
T ss_pred CCCCcceeeeeecc-------ceeEEEccCCCceeEEecCchH---HhhcccCCCeEEEEee-----------cccc--e
Confidence 45678899999998 3679999999999999998754 4566666889999999 9998 9
Q ss_pred EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEeCCe
Q 004255 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQ 212 (765)
Q Consensus 133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~~~~ 212 (765)
||+|..+ .|++++++++|.+..||.+.|+++|++|++|+++|+|+++++
T Consensus 59 vaiV~~~-------------------------------qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~ 107 (391)
T KOG2110|consen 59 VAIVSIK-------------------------------QPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEES 107 (391)
T ss_pred eEEEecC-------------------------------CCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEccc
Confidence 9987652 258999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceeEEEEec-CCcccCCCCccccccccceeEEcc----ceEEEecCCceecCCccccCCCCCCCCCCCCcC
Q 004255 213 IYCFDALTLENKFSVLTY-PVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (765)
Q Consensus 213 I~iwD~~t~~~l~tl~t~-p~p~~~~~~~~~~~~~~~~~Alsp----r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~s 287 (765)
|||||+.+|+.+++|.+. |+| .+.+|+++ .||||+++.
T Consensus 108 IyIydI~~MklLhTI~t~~~n~-------------~gl~AlS~n~~n~ylAyp~s~------------------------ 150 (391)
T KOG2110|consen 108 IYIYDIKDMKLLHTIETTPPNP-------------KGLCALSPNNANCYLAYPGST------------------------ 150 (391)
T ss_pred EEEEecccceeehhhhccCCCc-------------cceEeeccCCCCceEEecCCC------------------------
Confidence 999999999999999976 564 46788887 588888631
Q ss_pred CCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 004255 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (765)
Q Consensus 288 p~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a 367 (765)
..|.|+|||+.+.+.+..|.+
T Consensus 151 -----------------------------------------------------------t~GdV~l~d~~nl~~v~~I~a 171 (391)
T KOG2110|consen 151 -----------------------------------------------------------TSGDVVLFDTINLQPVNTINA 171 (391)
T ss_pred -----------------------------------------------------------CCceEEEEEcccceeeeEEEe
Confidence 257899999999999999999
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 004255 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (765)
Q Consensus 368 H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~La 447 (765)
|.++|.||+||++|++|||||++|++||||.+.. | +++|+||||.....|++|+||||+++|+
T Consensus 172 H~~~lAalafs~~G~llATASeKGTVIRVf~v~~-------G----------~kl~eFRRG~~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 172 HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-------G----------QKLYEFRRGTYPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred cCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-------c----------cEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence 9999999999999999999999999999999954 5 6999999999878999999999999999
Q ss_pred EEeCCCcEEEEeCCCCCCCcccccccCCCCCCccccccCCCcccCCCCCccCCcCCCCCCeeeeeeeeeeeCCCCccccc
Q 004255 448 IVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTV 527 (765)
Q Consensus 448 s~S~dgTVhIwdl~~~gg~~~~~~h~~~~~~~~~~p~~~l~~~~~s~~~~~q~~~~~~~~~~l~~~~~i~~~~~~w~~~~ 527 (765)
++|+.+|||||.|+...... ...|. ...+|.+.+
T Consensus 235 ~sS~TeTVHiFKL~~~~~~~----------------------------------~~~p~------------~~~~~~~~~ 268 (391)
T KOG2110|consen 235 ASSNTETVHIFKLEKVSNNP----------------------------------PESPT------------AGTSWFGKV 268 (391)
T ss_pred EecCCCeEEEEEecccccCC----------------------------------CCCCC------------CCCcccchh
Confidence 99999999999998642100 00111 124688888
Q ss_pred ccccccccCccccccceeeeecccCcc--ccccc--------cccccCccccEEEEcCCccEEEEecccCCCCCCCCCC
Q 004255 528 SNASASSMGKVFVPSGAVAAVFHNSIA--HSSQH--------VNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDG 596 (765)
Q Consensus 528 ~~~~~~a~~~~~~p~~~v~~~f~~~~~--~~~~~--------~~~~~~~~~~Llv~s~~G~l~~y~l~p~~g~~~~~~~ 596 (765)
++++.+ |+|++ |+.+++++|. +++++ .+..+++.++++|++.|||+|.|+|+|++||||.+..
T Consensus 269 sk~~~s-----ylps~-V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik 341 (391)
T KOG2110|consen 269 SKAATS-----YLPSQ-VSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIK 341 (391)
T ss_pred hhhhhh-----hcchh-hhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEE
Confidence 776666 99999 9999999987 44444 3557789999999999999999999999999999765
No 4
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=5.4e-37 Score=317.66 Aligned_cols=315 Identities=25% Similarity=0.328 Sum_probs=251.9
Q ss_pred cEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeee--eccCCEEEEEEecCCCCCCCCCCccccCCEEEE
Q 004255 58 QVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLV 135 (765)
Q Consensus 58 ~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells--~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLav 135 (765)
+.+=+.|++ | ..++++|.++||+||++++ +.|..+ .+++.+..++|| |+.+ +||+
T Consensus 7 ~~lsvs~NQ----D---~ScFava~~~Gfriyn~~P---~ke~~~r~~~~~G~~~veML-----------fR~N--~laL 63 (346)
T KOG2111|consen 7 KTLSVSFNQ----D---HSCFAVATDTGFRIYNCDP---FKESASRQFIDGGFKIVEML-----------FRSN--YLAL 63 (346)
T ss_pred ceeEEEEcc----C---CceEEEEecCceEEEecCc---hhhhhhhccccCchhhhhHh-----------hhhc--eEEE
Confidence 344488998 3 5699999999999999987 444333 345669999999 9998 9999
Q ss_pred EEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEeCCeEEE
Q 004255 136 VAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYC 215 (765)
Q Consensus 136 v~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~~~~I~i 215 (765)
|.|+. ++-++|++|.|||.....++.++.|.++|.+|++.++.|+|.++++|++
T Consensus 64 VGGg~--------------------------~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~V 117 (346)
T KOG2111|consen 64 VGGGS--------------------------RPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYV 117 (346)
T ss_pred ecCCC--------------------------CCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEE
Confidence 87532 1245789999999999999999999999999999999999999999999
Q ss_pred EECC-CCceeEEEEecCCcccCCCCccccccccceeEEcc----ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCC
Q 004255 216 FDAL-TLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGG 290 (765)
Q Consensus 216 wD~~-t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp----r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~ 290 (765)
|.-. +.+.++.+.+.++| .|.+++.| .+|||++.
T Consensus 118 ytF~~n~k~l~~~et~~NP-------------kGlC~~~~~~~k~~LafPg~---------------------------- 156 (346)
T KOG2111|consen 118 YTFPDNPKLLHVIETRSNP-------------KGLCSLCPTSNKSLLAFPGF---------------------------- 156 (346)
T ss_pred EEcCCChhheeeeecccCC-------------CceEeecCCCCceEEEcCCC----------------------------
Confidence 9976 78899999988876 25566655 44555442
Q ss_pred CcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE--EEEeccC
Q 004255 291 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI--ISQFKAH 368 (765)
Q Consensus 291 gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~--i~~~~aH 368 (765)
..|.|+|-|+...+. ...+.||
T Consensus 157 --------------------------------------------------------k~GqvQi~dL~~~~~~~p~~I~AH 180 (346)
T KOG2111|consen 157 --------------------------------------------------------KTGQVQIVDLASTKPNAPSIINAH 180 (346)
T ss_pred --------------------------------------------------------ccceEEEEEhhhcCcCCceEEEcc
Confidence 346788888876554 4678999
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (765)
Q Consensus 369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las 448 (765)
.+.|.|++++-+|++|||||.+|+.|||||..+ | .++++||||...+.|++|+||||+.|||+
T Consensus 181 ~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-------g----------~~l~E~RRG~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 181 DSDIACVALNLQGTLVATASTKGTLIRIFDTED-------G----------TLLQELRRGVDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred cCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-------C----------cEeeeeecCCchheEEEEEeCCCccEEEE
Confidence 999999999999999999999999999999876 5 69999999999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCCCCcccccccCCCCCCccccc-cCCCcccCCCCCccCCcCCCCCCeeeeeeeeeeeCCCCccccc
Q 004255 449 VSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV-LSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTV 527 (765)
Q Consensus 449 ~S~dgTVhIwdl~~~gg~~~~~~h~~~~~~~~~~p~-~~l~~~~~s~~~~~q~~~~~~~~~~l~~~~~i~~~~~~w~~~~ 527 (765)
+|++||+|||.+.... .+.+.|+ .++.. ..||.|+.|+|+++|+.+|..+
T Consensus 244 sSdKgTlHiF~l~~~~--~~~~~~S------Sl~~~~~~lpky~~S~wS~~~f~l~~~~--------------------- 294 (346)
T KOG2111|consen 244 SSDKGTLHIFSLRDTE--NTEDESS------SLSFKRLVLPKYFSSEWSFAKFQLPQGT--------------------- 294 (346)
T ss_pred EcCCCeEEEEEeecCC--CCccccc------cccccccccchhcccceeEEEEEccCCC---------------------
Confidence 9999999999997632 1222332 22222 4689999999999987776322
Q ss_pred ccccccccCccccccceeeeecccCccccccccccccCccccEEEEcCCccEEEEecccCCCCCCCC
Q 004255 528 SNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSD 594 (765)
Q Consensus 528 ~~~~~~a~~~~~~p~~~v~~~f~~~~~~~~~~~~~~~~~~~~Llv~s~~G~l~~y~l~p~~g~~~~~ 594 (765)
. +..-|.+. ...+++.+-||.-+.|.++|.+||+|..
T Consensus 295 ---------------~-~~~~fg~~--------------~nsvi~i~~Dgsy~k~~f~~~~~g~~~~ 331 (346)
T KOG2111|consen 295 ---------------Q-CIIAFGSE--------------TNTVIAICADGSYYKFKFDPKNGGESSR 331 (346)
T ss_pred ---------------c-EEEEecCC--------------CCeEEEEEeCCcEEEEEeccccccchhh
Confidence 1 22223322 1357888999999999999999999974
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.8e-24 Score=228.56 Aligned_cols=315 Identities=14% Similarity=0.129 Sum_probs=218.1
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (765)
Q Consensus 51 ~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~s 129 (765)
..++|-+.|+.+.|-. .+..|++|..+ .+++||++ +.....++.+|..+|-+|++.|+. +
T Consensus 110 S~~GH~e~Vl~~~fsp-------~g~~l~tGsGD~TvR~WD~~-TeTp~~t~KgH~~WVlcvawsPDg-----------k 170 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSP-------TGSRLVTGSGDTTVRLWDLD-TETPLFTCKGHKNWVLCVAWSPDG-----------K 170 (480)
T ss_pred ccCCCCCcEEEEEecC-------CCceEEecCCCceEEeeccC-CCCcceeecCCccEEEEEEECCCc-----------c
Confidence 3677899999999954 46789999876 59999995 566788999999999999999973 2
Q ss_pred CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEE-EEEeCC-CCEEEEEecC-----
Q 004255 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE-HVLRFR-SSVCMVRCSP----- 202 (765)
Q Consensus 130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v-~tL~~~-s~V~sV~~s~----- 202 (765)
.||. |. .+++|++||.++|+++ ..|..| -.|.++++-|
T Consensus 171 --~iAS--G~-------------------------------~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p 215 (480)
T KOG0271|consen 171 --KIAS--GS-------------------------------KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP 215 (480)
T ss_pred --hhhc--cc-------------------------------cCCeEEEecCCCCCcccccccCcccceeEEeecccccCC
Confidence 4554 21 2478999999998765 567765 4899999865
Q ss_pred --CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCceecCCccccCCCCC
Q 004255 203 --RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTLLLSNSGRLSPQNLT 278 (765)
Q Consensus 203 --~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp-r~LAyas~~~~~~~~G~~s~~~lt 278 (765)
++||.+. |+.|+|||+.-+++++++.+|+++ +..+-.|. -||++++.+.-+ ..|+...
T Consensus 216 ~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~-------------VTCvrwGG~gliySgS~DrtI-----kvw~a~d 277 (480)
T KOG0271|consen 216 PCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS-------------VTCVRWGGEGLIYSGSQDRTI-----KVWRALD 277 (480)
T ss_pred CccceecccCCCCEEEEEccCceEEEEeccCccc-------------eEEEEEcCCceEEecCCCceE-----EEEEccc
Confidence 6788766 567999999999999999999985 35566665 566666654211 1122111
Q ss_pred CCCCCCCcCCCCCcceeeehhhhhhhhhcccc---------------eeecccccccCCCCCCCCccCCCcccccccccc
Q 004255 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS---------------KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGA 343 (765)
Q Consensus 279 ~~~~s~s~sp~~gslva~~a~d~~k~la~G~~---------------ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~ 343 (765)
...+. ...+-+..|.++|...-..+-.|.. +.+.+|-.- ..+ .+--++
T Consensus 278 G~~~r--~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~-~~~--------------~~erlV 340 (480)
T KOG0271|consen 278 GKLCR--ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV-LKD--------------SGERLV 340 (480)
T ss_pred hhHHH--hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh-hcc--------------CcceeE
Confidence 00000 0000000011111110000111110 112222110 000 001245
Q ss_pred ccCCCCeEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 344 DMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 344 ~~~~dG~V~IwDl~-s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
++..|+++.+|+-. +.+++..+.+|..-|+.+.|||||+++|+||. |+.||+||-.+ | +.+
T Consensus 341 SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF-DkSVkLW~g~t-------G----------k~l 402 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF-DKSVKLWDGRT-------G----------KFL 402 (480)
T ss_pred EecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec-ccceeeeeCCC-------c----------chh
Confidence 78899999999964 45688899999999999999999999999999 56799999865 4 456
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccC
Q 004255 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (765)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~ 474 (765)
..| ||+ -+.|+.|+||.|++.|+++|.|.|++||++.+.+-..++.+|..
T Consensus 403 asf-RGH-v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~D 452 (480)
T KOG0271|consen 403 ASF-RGH-VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHAD 452 (480)
T ss_pred hhh-hhc-cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCc
Confidence 666 564 46799999999999999999999999999999888888888854
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.91 E-value=2.1e-23 Score=237.01 Aligned_cols=228 Identities=20% Similarity=0.273 Sum_probs=175.9
Q ss_pred CCeEEEEEecCc-EEEEEccCC------------------------------CcceEeeeeccCCEEEEEEecCCCCCCC
Q 004255 74 FKQVLLLGYQNG-FQVLDVEDA------------------------------SNFNELVSKRDGPVSFLQMQPFPVKDDG 122 (765)
Q Consensus 74 ~~~vL~~G~~~G-~qVWdv~~~------------------------------g~~~ells~~dg~V~~v~~lP~p~~~~~ 122 (765)
+.+.|+.|..+- ++||.+.+. +...+.+-+|.|||..+.|.|+
T Consensus 389 dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd------ 462 (707)
T KOG0263|consen 389 DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD------ 462 (707)
T ss_pred CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc------
Confidence 456899998875 899998731 1233457788999999998874
Q ss_pred CCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEec
Q 004255 123 CEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCS 201 (765)
Q Consensus 123 ~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s 201 (765)
+.+|+.++. +.+||+|++.+..++..++.| .+|++|+|+
T Consensus 463 -------~rfLlScSE---------------------------------D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~ 502 (707)
T KOG0263|consen 463 -------RRFLLSCSE---------------------------------DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA 502 (707)
T ss_pred -------ccceeeccC---------------------------------CcceeeeecccceeEEEecCCCcceeeEEec
Confidence 346654221 368999999999999999977 499999999
Q ss_pred CC--eEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCC
Q 004255 202 PR--IVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQN 276 (765)
Q Consensus 202 ~~--~LaV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~ 276 (765)
|+ ++|++.+ .+-++|.....+.++.+.+|-+ .+++++|.| .|+
T Consensus 503 P~GyYFatas~D~tArLWs~d~~~PlRifaghls-------------DV~cv~FHPNs~Y~------------------- 550 (707)
T KOG0263|consen 503 PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLS-------------DVDCVSFHPNSNYV------------------- 550 (707)
T ss_pred CCceEEEecCCCceeeeeecccCCchhhhccccc-------------ccceEEECCccccc-------------------
Confidence 93 6777654 4689998777665555555433 123455544 222
Q ss_pred CCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEEC
Q 004255 277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 356 (765)
Q Consensus 277 lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl 356 (765)
++++.|.+||+||+
T Consensus 551 ------------------------------------------------------------------aTGSsD~tVRlWDv 564 (707)
T KOG0263|consen 551 ------------------------------------------------------------------ATGSSDRTVRLWDV 564 (707)
T ss_pred ------------------------------------------------------------------ccCCCCceEEEEEc
Confidence 23456889999999
Q ss_pred CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEE
Q 004255 357 VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQD 436 (765)
Q Consensus 357 ~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~s 436 (765)
.+|..+..|.||+++|.+|+|||+|++||+|+.|| .|+|||+.. | ..+..+ +|+ .+.|++
T Consensus 565 ~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~-~I~iWDl~~-------~----------~~v~~l-~~H-t~ti~S 624 (707)
T KOG0263|consen 565 STGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG-LIKIWDLAN-------G----------SLVKQL-KGH-TGTIYS 624 (707)
T ss_pred CCCcEEEEecCCCCceEEEEEcCCCceEeecccCC-cEEEEEcCC-------C----------cchhhh-hcc-cCceeE
Confidence 99999999999999999999999999999999976 599999954 3 344444 465 568999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 437 ICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 437 laFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
|.||.||..||+++.|.+|++||+...-+
T Consensus 625 lsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 625 LSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred EEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 99999999999999999999999976433
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=2.6e-23 Score=222.33 Aligned_cols=255 Identities=16% Similarity=0.180 Sum_probs=201.1
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCE
Q 004255 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (765)
Q Consensus 54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpL 132 (765)
++.-.|..+.|-. +...|++|+.+| .+||.+.. .+...+|.+|.+.|..+.|.|.- +.--
T Consensus 173 gd~rPis~~~fS~-------ds~~laT~swsG~~kvW~~~~-~~~~~~l~gH~~~v~~~~fhP~~-----------~~~~ 233 (459)
T KOG0272|consen 173 GDTRPISGCSFSR-------DSKHLATGSWSGLVKVWSVPQ-CNLLQTLRGHTSRVGAAVFHPVD-----------SDLN 233 (459)
T ss_pred cCCCcceeeEeec-------CCCeEEEeecCCceeEeecCC-cceeEEEeccccceeeEEEccCC-----------Cccc
Confidence 3455677777754 467999999998 79999964 57888999999999999999841 1113
Q ss_pred EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEE-
Q 004255 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG- 208 (765)
Q Consensus 133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~- 208 (765)
||.++ .+++|++|++.+.+.+..|+.| ..|-.|+|+| ++|+++
T Consensus 234 lat~s---------------------------------~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tas 280 (459)
T KOG0272|consen 234 LATAS---------------------------------ADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTAS 280 (459)
T ss_pred eeeec---------------------------------cCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecc
Confidence 45432 2479999999998999999876 5999999998 788875
Q ss_pred eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCC
Q 004255 209 LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (765)
Q Consensus 209 ~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp 288 (765)
+|.+=++||+.|.+.+.-..+|..+ +-.++|.+ +
T Consensus 281 fD~tWRlWD~~tk~ElL~QEGHs~~-------------v~~iaf~~-------D-------------------------- 314 (459)
T KOG0272|consen 281 FDSTWRLWDLETKSELLLQEGHSKG-------------VFSIAFQP-------D-------------------------- 314 (459)
T ss_pred cccchhhcccccchhhHhhcccccc-------------cceeEecC-------C--------------------------
Confidence 4667999999999888777777652 12233311 1
Q ss_pred CCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC
Q 004255 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH 368 (765)
Q Consensus 289 ~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH 368 (765)
|+|++ +++.|..-+|||+++++++..|.+|
T Consensus 315 --GSL~~------------------------------------------------tGGlD~~~RvWDlRtgr~im~L~gH 344 (459)
T KOG0272|consen 315 --GSLAA------------------------------------------------TGGLDSLGRVWDLRTGRCIMFLAGH 344 (459)
T ss_pred --Cceee------------------------------------------------ccCccchhheeecccCcEEEEeccc
Confidence 22221 3456778899999999999999999
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEE
Q 004255 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIA 447 (765)
Q Consensus 369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp-Dg~~La 447 (765)
..+|..|+|||+|..|||||.|+ ++||||++-. ..+|.+- + |...|..+.|+| -|++|+
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dn-t~kVWDLR~r-----------------~~ly~ip-A-H~nlVS~Vk~~p~~g~fL~ 404 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDN-TCKVWDLRMR-----------------SELYTIP-A-HSNLVSQVKYSPQEGYFLV 404 (459)
T ss_pred ccceeeEeECCCceEEeecCCCC-cEEEeeeccc-----------------ccceecc-c-ccchhhheEecccCCeEEE
Confidence 99999999999999999999966 5999999641 3567664 3 345799999999 679999
Q ss_pred EEeCCCcEEEEeCCCCCCCcccccccCCC
Q 004255 448 IVSSKGTCHVFVLSPFGGDSGFQTLSSQG 476 (765)
Q Consensus 448 s~S~dgTVhIwdl~~~gg~~~~~~h~~~~ 476 (765)
++|.|+|++||.-........+.+|..++
T Consensus 405 TasyD~t~kiWs~~~~~~~ksLaGHe~kV 433 (459)
T KOG0272|consen 405 TASYDNTVKIWSTRTWSPLKSLAGHEGKV 433 (459)
T ss_pred EcccCcceeeecCCCcccchhhcCCccce
Confidence 99999999999988888888889997654
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.7e-22 Score=212.14 Aligned_cols=291 Identities=15% Similarity=0.143 Sum_probs=201.2
Q ss_pred CCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCC
Q 004255 71 PSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQN 149 (765)
Q Consensus 71 ~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~ 149 (765)
.+.+++.|++|..+| |.+||-...+..-+.|.+|..+|..+++-|--... ..| +||..+
T Consensus 165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p-------~~r-~las~s------------ 224 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP-------PCR-RLASSS------------ 224 (480)
T ss_pred ECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCC-------Ccc-ceeccc------------
Confidence 345789999999987 99999876667778999999999999998753211 122 454411
Q ss_pred cCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC-CeEEEEeC-CeEEEEECCCCceeEE
Q 004255 150 RSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-RIVAVGLA-TQIYCFDALTLENKFS 226 (765)
Q Consensus 150 ~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~-~~LaV~~~-~~I~iwD~~t~~~l~t 226 (765)
.++.|+|||++.+.++..+..| .+|.+|+.-. .+|..+.. .+|++|++.++++.++
T Consensus 225 ---------------------kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~ 283 (480)
T KOG0271|consen 225 ---------------------KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRE 283 (480)
T ss_pred ---------------------CCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHh
Confidence 2468999999999999999876 5999999986 78888764 5799999999999999
Q ss_pred EEecCCcccCCCCccccccccceeEEccceEEE-ecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehh---hhh
Q 004255 227 VLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAY-ASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM---EHS 302 (765)
Q Consensus 227 l~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAy-as~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~---d~~ 302 (765)
|++|... .+.+|++..|.-= +..+ +.|+... +++-.-..-..+|-. +..
T Consensus 284 lkGHahw-------------vN~lalsTdy~LRtgaf~----~t~~~~~----------~~se~~~~Al~rY~~~~~~~~ 336 (480)
T KOG0271|consen 284 LKGHAHW-------------VNHLALSTDYVLRTGAFD----HTGRKPK----------SFSEEQKKALERYEAVLKDSG 336 (480)
T ss_pred hcccchh-------------eeeeeccchhhhhccccc----cccccCC----------ChHHHHHHHHHHHHHhhccCc
Confidence 9988763 3567776532211 1000 0111100 000000000000000 000
Q ss_pred hhhhccc-------c---------eeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255 303 KQFAAGL-------S---------KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (765)
Q Consensus 303 k~la~G~-------~---------ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~ 366 (765)
..+.+|. + ..+++|.+ -.+..+++|+.+. +++++.|..|++||-.+|+-+.+|+
T Consensus 337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~------lVn~V~fSPd~r~----IASaSFDkSVkLW~g~tGk~lasfR 406 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQA------LVNHVSFSPDGRY----IASASFDKSVKLWDGRTGKFLASFR 406 (480)
T ss_pred ceeEEecCCceEEEecccccccchhhhhchhh------heeeEEECCCccE----EEEeecccceeeeeCCCcchhhhhh
Confidence 0111110 0 01122221 1344566777665 5578899999999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 004255 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (765)
Q Consensus 367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L 446 (765)
+|-.+|+.++|+.|.++|+++|. |++++|||+++- ...++| -|+ ...|+++.|||||+.+
T Consensus 407 GHv~~VYqvawsaDsRLlVS~Sk-DsTLKvw~V~tk-----------------Kl~~DL-pGh-~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 407 GHVAAVYQVAWSADSRLLVSGSK-DSTLKVWDVRTK-----------------KLKQDL-PGH-ADEVFAVDWSPDGQRV 466 (480)
T ss_pred hccceeEEEEeccCccEEEEcCC-CceEEEEEeeee-----------------eecccC-CCC-CceEEEEEecCCCcee
Confidence 99999999999999999999999 567999999651 233444 353 4579999999999999
Q ss_pred EEEeCCCcEEEEe
Q 004255 447 AIVSSKGTCHVFV 459 (765)
Q Consensus 447 as~S~dgTVhIwd 459 (765)
|+|+.|..++||.
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 9999999999995
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.89 E-value=2e-21 Score=196.32 Aligned_cols=264 Identities=19% Similarity=0.225 Sum_probs=178.6
Q ss_pred EEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEc-----CCCCCCC--C---
Q 004255 77 VLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAG-----EDTNTLA--P--- 146 (765)
Q Consensus 77 vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~-----d~~~~~~--~--- 146 (765)
+...||+..||+|.. .+|.|..++...|+.|..+++.|+.. +||+.+- -+..+.. |
T Consensus 13 LvsA~YDhTIRfWqa-~tG~C~rTiqh~dsqVNrLeiTpdk~-------------~LAaa~~qhvRlyD~~S~np~Pv~t 78 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQA-LTGICSRTIQHPDSQVNRLEITPDKK-------------DLAAAGNQHVRLYDLNSNNPNPVAT 78 (311)
T ss_pred EEeccCcceeeeeeh-hcCeEEEEEecCccceeeEEEcCCcc-------------hhhhccCCeeEEEEccCCCCCceeE
Confidence 344577889999999 57999999999999999999998531 2222110 0000000 0
Q ss_pred ----CCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe-CCeEEEEECC
Q 004255 147 ----GQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDAL 219 (765)
Q Consensus 147 ----~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~ 219 (765)
..+....|+-.+|.|.-.++ -++++||||++.-.+-+.+++.++|..|..+| .-|++|. .+.|++||+.
T Consensus 79 ~e~h~kNVtaVgF~~dgrWMyTgs----eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 79 FEGHTKNVTAVGFQCDGRWMYTGS----EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG 154 (311)
T ss_pred EeccCCceEEEEEeecCeEEEecC----CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence 01111223337888873222 26899999999988888999999999999988 3566665 4579999998
Q ss_pred CCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehh
Q 004255 220 TLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 299 (765)
Q Consensus 220 t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~ 299 (765)
+-.+-+.+. |.+ .....++++.| + |+
T Consensus 155 ~~~c~~~li--Pe~----------~~~i~sl~v~~-------d----------------------------gs------- 180 (311)
T KOG0315|consen 155 ENSCTHELI--PED----------DTSIQSLTVMP-------D----------------------------GS------- 180 (311)
T ss_pred CCccccccC--CCC----------CcceeeEEEcC-------C----------------------------Cc-------
Confidence 754433221 111 00111222211 1 00
Q ss_pred hhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC------cEEEEeccCCCCeE
Q 004255 300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------AIISQFKAHTSPIS 373 (765)
Q Consensus 300 d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~------~~i~~~~aH~~~Is 373 (765)
+ ++.+...|...+|++-+. .++.+|++|..-|.
T Consensus 181 -------------------------------------m----l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il 219 (311)
T KOG0315|consen 181 -------------------------------------M----LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL 219 (311)
T ss_pred -------------------------------------E----EEEecCCccEEEEEccCCCccccceEhhheecccceEE
Confidence 0 112345688889988653 46778999999999
Q ss_pred EEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 004255 374 ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453 (765)
Q Consensus 374 aLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dg 453 (765)
.+.||||+++|||+|. +++++||++... ...-..+. | ++..+++++||.||+||++++.|+
T Consensus 220 ~C~lSPd~k~lat~ss-dktv~iwn~~~~----------------~kle~~l~-g-h~rWvWdc~FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSS-DKTVKIWNTDDF----------------FKLELVLT-G-HQRWVWDCAFSADGEYLVTASSDH 280 (311)
T ss_pred EEEECCCCcEEEeecC-CceEEEEecCCc----------------eeeEEEee-c-CCceEEeeeeccCccEEEecCCCC
Confidence 9999999999999999 567999998531 01111222 3 235899999999999999999999
Q ss_pred cEEEEeCCCCCCCcccccc
Q 004255 454 TCHVFVLSPFGGDSGFQTL 472 (765)
Q Consensus 454 TVhIwdl~~~gg~~~~~~h 472 (765)
++|+|++...+......+|
T Consensus 281 ~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 281 TARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred ceeecccccCceeeecCCc
Confidence 9999999886655555566
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.5e-21 Score=208.93 Aligned_cols=240 Identities=19% Similarity=0.153 Sum_probs=189.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
+-+|+++|.-+-|-..+ ....|++|..+| +++|+++. ......|.+|...|..|+|-|+ +
T Consensus 213 l~gH~~~v~~~~fhP~~-----~~~~lat~s~Dgtvklw~~~~-e~~l~~l~gH~~RVs~VafHPs-------------G 273 (459)
T KOG0272|consen 213 LRGHTSRVGAAVFHPVD-----SDLNLATASADGTVKLWKLSQ-ETPLQDLEGHLARVSRVAFHPS-------------G 273 (459)
T ss_pred EeccccceeeEEEccCC-----CccceeeeccCCceeeeccCC-CcchhhhhcchhhheeeeecCC-------------C
Confidence 56789999988886532 245788888776 99999964 4455667788889999999875 3
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-CEEEEEecC--CeEEE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAV 207 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s-~V~sV~~s~--~~LaV 207 (765)
.+|+..+- +.+-++||+.+++++...+.|+ .|++|+|++ .++++
T Consensus 274 ~~L~Tasf---------------------------------D~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~t 320 (459)
T KOG0272|consen 274 KFLGTASF---------------------------------DSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAAT 320 (459)
T ss_pred ceeeeccc---------------------------------ccchhhcccccchhhHhhcccccccceeEecCCCceeec
Confidence 36765321 3678999999999998888876 899999987 56666
Q ss_pred E-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255 208 G-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (765)
Q Consensus 208 ~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~ 286 (765)
| +|..-+|||++|++++..|.+|..+ .-.++|+|+
T Consensus 321 GGlD~~~RvWDlRtgr~im~L~gH~k~-------------I~~V~fsPN------------------------------- 356 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMFLAGHIKE-------------ILSVAFSPN------------------------------- 356 (459)
T ss_pred cCccchhheeecccCcEEEEecccccc-------------eeeEeECCC-------------------------------
Confidence 4 4566899999999999999887663 123444331
Q ss_pred CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (765)
Q Consensus 287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~ 366 (765)
+..+++++.|++++|||++..+.+.++.
T Consensus 357 ----------------------------------------------------Gy~lATgs~Dnt~kVWDLR~r~~ly~ip 384 (459)
T KOG0272|consen 357 ----------------------------------------------------GYHLATGSSDNTCKVWDLRMRSELYTIP 384 (459)
T ss_pred ----------------------------------------------------ceEEeecCCCCcEEEeeecccccceecc
Confidence 1123356678999999999999999999
Q ss_pred cCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 004255 367 AHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (765)
Q Consensus 367 aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~ 445 (765)
+|++-|+.++|+| .|.+|+|||.|. +++||.... + .++..|. |+. ..|.++..|+||++
T Consensus 385 AH~nlVS~Vk~~p~~g~fL~TasyD~-t~kiWs~~~-------~----------~~~ksLa-GHe-~kV~s~Dis~d~~~ 444 (459)
T KOG0272|consen 385 AHSNLVSQVKYSPQEGYFLVTASYDN-TVKIWSTRT-------W----------SPLKSLA-GHE-GKVISLDISPDSQA 444 (459)
T ss_pred cccchhhheEecccCCeEEEEcccCc-ceeeecCCC-------c----------ccchhhc-CCc-cceEEEEeccCCce
Confidence 9999999999999 899999999965 599998744 2 4566664 644 57999999999999
Q ss_pred EEEEeCCCcEEEEe
Q 004255 446 IAIVSSKGTCHVFV 459 (765)
Q Consensus 446 Las~S~dgTVhIwd 459 (765)
|++++.|.|+++|.
T Consensus 445 i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 445 IATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCceeeecc
Confidence 99999999999995
No 11
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.85 E-value=3.5e-18 Score=173.41 Aligned_cols=277 Identities=20% Similarity=0.259 Sum_probs=192.8
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
.++++.|..+.|.. .++.|++|..+| +++||++. ++....+..|..++..+.+.|+ ..
T Consensus 6 ~~h~~~i~~~~~~~-------~~~~l~~~~~~g~i~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~-------------~~ 64 (289)
T cd00200 6 KGHTGGVTCVAFSP-------DGKLLATGSGDGTIKVWDLET-GELLRTLKGHTGPVRDVAASAD-------------GT 64 (289)
T ss_pred cccCCCEEEEEEcC-------CCCEEEEeecCcEEEEEEeeC-CCcEEEEecCCcceeEEEECCC-------------CC
Confidence 46788899888866 246777777555 99999964 5566777788888988888864 12
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEE
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG 208 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~ 208 (765)
+|++ ++ .++.|++||+.+++.+..+..+ ..|.++.+++ ++|+++
T Consensus 65 ~l~~-~~--------------------------------~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 111 (289)
T cd00200 65 YLAS-GS--------------------------------SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS 111 (289)
T ss_pred EEEE-Ec--------------------------------CCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEe
Confidence 5554 22 1368999999998888888765 4899999988 677777
Q ss_pred e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCC
Q 004255 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (765)
Q Consensus 209 ~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s 285 (765)
. ++.|++||+.+++....+..+..+ ...++++| ++|+.+..+..+ ..|+..+..
T Consensus 112 ~~~~~i~~~~~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~~~~i-----~i~d~~~~~----- 168 (289)
T cd00200 112 SRDKTIKVWDVETGKCLTTLRGHTDW-------------VNSVAFSPDGTFVASSSQDGTI-----KLWDLRTGK----- 168 (289)
T ss_pred cCCCeEEEEECCCcEEEEEeccCCCc-------------EEEEEEcCcCCEEEEEcCCCcE-----EEEEccccc-----
Confidence 7 778999999988887777655431 34567777 677766522110 112211100
Q ss_pred cCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 004255 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (765)
Q Consensus 286 ~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~ 365 (765)
.+ +.+..+ ........++++.+ .+..+..+|.|++||+.+++.+..+
T Consensus 169 -------~~----------------~~~~~~------~~~i~~~~~~~~~~----~l~~~~~~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 169 -------CV----------------ATLTGH------TGEVNSVAFSPDGE----KLLSSSSDGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred -------cc----------------eeEecC------ccccceEEECCCcC----EEEEecCCCcEEEEECCCCceecch
Confidence 00 000000 00011111222221 1234455999999999999999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 004255 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (765)
Q Consensus 366 ~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~ 445 (765)
..|..+|.+++|+|++.++++++.+|. |++||+.. + ..+..+. + +...|.+++|++++++
T Consensus 216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~-------~----------~~~~~~~-~-~~~~i~~~~~~~~~~~ 275 (289)
T cd00200 216 RGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRT-------G----------ECVQTLS-G-HTNSVTSLAWSPDGKR 275 (289)
T ss_pred hhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCC-------c----------eeEEEcc-c-cCCcEEEEEECCCCCE
Confidence 999999999999999999999987565 99999854 2 3444554 3 3456999999999999
Q ss_pred EEEEeCCCcEEEEe
Q 004255 446 IAIVSSKGTCHVFV 459 (765)
Q Consensus 446 Las~S~dgTVhIwd 459 (765)
|++++.||+++||+
T Consensus 276 l~~~~~d~~i~iw~ 289 (289)
T cd00200 276 LASGSADGTIRIWD 289 (289)
T ss_pred EEEecCCCeEEecC
Confidence 99999999999996
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.84 E-value=4.5e-19 Score=192.02 Aligned_cols=265 Identities=18% Similarity=0.235 Sum_probs=197.4
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (765)
Q Consensus 74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~ 152 (765)
.+..|++|.-+| ++||+. .|++..+|..|.|||..|++.. ....|+. ++
T Consensus 246 ~G~~LatG~~~G~~riw~~--~G~l~~tl~~HkgPI~slKWnk-------------~G~yilS--~~------------- 295 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNK--DGNLISTLGQHKGPIFSLKWNK-------------KGTYILS--GG------------- 295 (524)
T ss_pred CCCeEEEeecCcEEEEEec--CchhhhhhhccCCceEEEEEcC-------------CCCEEEe--cc-------------
Confidence 488999999998 799998 4778899999999999999984 2346654 21
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCE-EEEEecC-CeEEE-EeCCeEEEEECCCCceeEEEEe
Q 004255 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSV-CMVRCSP-RIVAV-GLATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V-~sV~~s~-~~LaV-~~~~~I~iwD~~t~~~l~tl~t 229 (765)
.++++.+||..+|+.-..+.|++.. ++|..-. ..+|+ +.+..|+++-+.--+...++.+
T Consensus 296 ------------------vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G 357 (524)
T KOG0273|consen 296 ------------------VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG 357 (524)
T ss_pred ------------------CCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeec
Confidence 2478999999999999999999866 8888654 44554 4566799999988788888888
Q ss_pred cCCcccCCCCccccccccceeEEcc--ceEEEecCCc--eecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhh
Q 004255 230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTL--LLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (765)
Q Consensus 230 ~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~--~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~l 305 (765)
|.++ ...+-+.| ..||+++++. .+++.|.-.-.
T Consensus 358 H~g~-------------V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~------------------------------ 394 (524)
T KOG0273|consen 358 HHGE-------------VNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV------------------------------ 394 (524)
T ss_pred ccCc-------------eEEEEECCCCceEEEecCCCeeEeeecCCCcch------------------------------
Confidence 8874 34567776 7899998873 33443321000
Q ss_pred hcccceeecccccc-----cCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCC
Q 004255 306 AAGLSKTLSKYCQE-----LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS 380 (765)
Q Consensus 306 a~G~~ktls~~~~~-----~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpd 380 (765)
+.|..|..+ ..|.+-. ..++ ..+..++.+..|++|++||+..+.+++.|..|+.||++|+|+|+
T Consensus 395 -----~~l~~Hskei~t~~wsp~g~v---~~n~---~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~ 463 (524)
T KOG0273|consen 395 -----HDLQAHSKEIYTIKWSPTGPV---TSNP---NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN 463 (524)
T ss_pred -----hhhhhhccceeeEeecCCCCc---cCCC---cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC
Confidence 011111111 1122211 1111 11224567889999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255 381 GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 381 G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl 460 (765)
|++||+|+.|| .|++|+++. | .+++-.+|. +.|..++|+.+|.+|+++-.||.+.+-|+
T Consensus 464 g~ylAsGs~dg-~V~iws~~~-------~-----------~l~~s~~~~--~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 464 GRYLASGSLDG-CVHIWSTKT-------G-----------KLVKSYQGT--GGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred CcEEEecCCCC-eeEeccccc-------h-----------heeEeecCC--CeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 99999999966 599999965 3 556555553 45999999999999999999999999887
Q ss_pred C
Q 004255 461 S 461 (765)
Q Consensus 461 ~ 461 (765)
.
T Consensus 523 r 523 (524)
T KOG0273|consen 523 R 523 (524)
T ss_pred c
Confidence 4
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.84 E-value=1.2e-18 Score=179.73 Aligned_cols=257 Identities=13% Similarity=0.093 Sum_probs=187.0
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
.-+|..+|.-..|-. +++.|+.++++| +-|||.- +.+-...+..+..+|-..++.|. .
T Consensus 51 LkGH~~Ki~~~~ws~-------Dsr~ivSaSqDGklIvWDs~-TtnK~haipl~s~WVMtCA~sPS-------------g 109 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWST-------DSRRIVSASQDGKLIVWDSF-TTNKVHAIPLPSSWVMTCAYSPS-------------G 109 (343)
T ss_pred ecccccceeeeEecC-------CcCeEEeeccCCeEEEEEcc-cccceeEEecCceeEEEEEECCC-------------C
Confidence 345666676655533 467889999998 7999985 45555677788889999998874 3
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC------eEEEEEeCC-CCEEEEEecC-
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH------CYEHVLRFR-SSVCMVRCSP- 202 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg------~~v~tL~~~-s~V~sV~~s~- 202 (765)
.++| +|+ .++...||++++. ...++|..+ +-+.+++|-.
T Consensus 110 ~~VA--cGG-------------------------------LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD 156 (343)
T KOG0286|consen 110 NFVA--CGG-------------------------------LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD 156 (343)
T ss_pred CeEE--ecC-------------------------------cCceeEEEecccccccccceeeeeecCccceeEEEEEcCC
Confidence 3554 221 2468899999866 234455544 5677777755
Q ss_pred -CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCC
Q 004255 203 -RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG 281 (765)
Q Consensus 203 -~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~ 281 (765)
.+|..+.+.+..+||+++++....+.+|..- +-.++|+| ++
T Consensus 157 ~~ilT~SGD~TCalWDie~g~~~~~f~GH~gD-------------V~slsl~p-------~~------------------ 198 (343)
T KOG0286|consen 157 NHILTGSGDMTCALWDIETGQQTQVFHGHTGD-------------VMSLSLSP-------SD------------------ 198 (343)
T ss_pred CceEecCCCceEEEEEcccceEEEEecCCccc-------------EEEEecCC-------CC------------------
Confidence 4555556678999999999988888877641 11222211 00
Q ss_pred CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 004255 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (765)
Q Consensus 282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~ 361 (765)
..+.++++.|+..+|||++.+.+
T Consensus 199 ---------------------------------------------------------~ntFvSg~cD~~aklWD~R~~~c 221 (343)
T KOG0286|consen 199 ---------------------------------------------------------GNTFVSGGCDKSAKLWDVRSGQC 221 (343)
T ss_pred ---------------------------------------------------------CCeEEecccccceeeeeccCcce
Confidence 00123567899999999999999
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 004255 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (765)
Q Consensus 362 i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp 441 (765)
+++|.+|.+.|++++|.|+|.-+||||+|++ +|+||++.. +.+..+..-.....|++++||.
T Consensus 222 ~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD-----------------~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 222 VQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRAD-----------------QELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred eEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCC-----------------cEEeeeccCcccCCceeEEEcc
Confidence 9999999999999999999999999999775 999999752 3444443222345699999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCcccccccCC
Q 004255 442 YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ 475 (765)
Q Consensus 442 Dg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~~ 475 (765)
.|++|.+|-.|.+++|||.-.....-.+.+|.+.
T Consensus 284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNR 317 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENR 317 (343)
T ss_pred cccEEEeeecCCceeEeeccccceEEEeeccCCe
Confidence 9999999999999999997654444456788643
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.83 E-value=2.5e-18 Score=176.54 Aligned_cols=248 Identities=15% Similarity=0.175 Sum_probs=181.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC----CcceEeeeeccCCEEEEEEecCCCCCCCCCCc
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA----SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGF 126 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~----g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f 126 (765)
.++++|.|.-...-. ..+.+|+.+.++- +-+|++... |...+.+.+|...|..+.+.++.
T Consensus 11 l~gh~d~Vt~la~~~------~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg--------- 75 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKI------KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG--------- 75 (315)
T ss_pred ecCCCceEEEEEeec------CCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC---------
Confidence 467888887665543 1356888888774 899999532 44566777777778887777542
Q ss_pred cccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-CEEEEEecC--C
Q 004255 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--R 203 (765)
Q Consensus 127 ~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s-~V~sV~~s~--~ 203 (765)
+ + |+ ++ +| ++++|+||+.+|+..+.|..|. -|++|++++ +
T Consensus 76 --~--~-al-S~---------------------sw----------D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~ 118 (315)
T KOG0279|consen 76 --N--F-AL-SA---------------------SW----------DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR 118 (315)
T ss_pred --c--e-EE-ec---------------------cc----------cceEEEEEecCCcEEEEEEecCCceEEEEecCCCc
Confidence 1 2 32 11 22 4799999999999999998775 789999998 4
Q ss_pred eEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCC
Q 004255 204 IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (765)
Q Consensus 204 ~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~ 282 (765)
.|+.|. |.+|.+||+.+ ++.+++...... + .+..+.|+|+- +++
T Consensus 119 qivSGSrDkTiklwnt~g-~ck~t~~~~~~~----------~-WVscvrfsP~~-----~~p------------------ 163 (315)
T KOG0279|consen 119 QIVSGSRDKTIKLWNTLG-VCKYTIHEDSHR----------E-WVSCVRFSPNE-----SNP------------------ 163 (315)
T ss_pred eeecCCCcceeeeeeecc-cEEEEEecCCCc----------C-cEEEEEEcCCC-----CCc------------------
Confidence 566655 56799999875 466776543210 0 12234443310 000
Q ss_pred CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE
Q 004255 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (765)
Q Consensus 283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i 362 (765)
.++.++.|++|+|||+.+-+..
T Consensus 164 ----------------------------------------------------------~Ivs~s~DktvKvWnl~~~~l~ 185 (315)
T KOG0279|consen 164 ----------------------------------------------------------IIVSASWDKTVKVWNLRNCQLR 185 (315)
T ss_pred ----------------------------------------------------------EEEEccCCceEEEEccCCcchh
Confidence 1234568999999999999999
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (765)
Q Consensus 363 ~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD 442 (765)
..|.+|++.++.++|||||.++|+|+.|| .+.+||+.. + +++|.|. ....|.+++|+|+
T Consensus 186 ~~~~gh~~~v~t~~vSpDGslcasGgkdg-~~~LwdL~~-------~----------k~lysl~---a~~~v~sl~fspn 244 (315)
T KOG0279|consen 186 TTFIGHSGYVNTVTVSPDGSLCASGGKDG-EAMLWDLNE-------G----------KNLYSLE---AFDIVNSLCFSPN 244 (315)
T ss_pred hccccccccEEEEEECCCCCEEecCCCCc-eEEEEEccC-------C----------ceeEecc---CCCeEeeEEecCC
Confidence 99999999999999999999999999966 599999965 3 5788885 2357999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCC
Q 004255 443 SQWIAIVSSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 443 g~~Las~S~dgTVhIwdl~~~gg~ 466 (765)
--||+.+...+ |+|||+.+....
T Consensus 245 rywL~~at~~s-IkIwdl~~~~~v 267 (315)
T KOG0279|consen 245 RYWLCAATATS-IKIWDLESKAVV 267 (315)
T ss_pred ceeEeeccCCc-eEEEeccchhhh
Confidence 99998887665 999999876543
No 15
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=7.2e-19 Score=185.66 Aligned_cols=252 Identities=15% Similarity=0.159 Sum_probs=188.9
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCE
Q 004255 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (765)
Q Consensus 54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpL 132 (765)
++++.+.-+.||- .+++|+.+..+- +++||.+..-.+.+.+.+|+-.|..+.++|.. ..
T Consensus 148 GHt~sv~di~~~a-------~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-------------d~ 207 (406)
T KOG0295|consen 148 GHTDSVFDISFDA-------SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-------------DH 207 (406)
T ss_pred ccccceeEEEEec-------CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-------------Ce
Confidence 3455555555544 368999999987 99999987677888999999999999999852 25
Q ss_pred EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-CEEEEEecC--CeEEEEe
Q 004255 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAVGL 209 (765)
Q Consensus 133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s-~V~sV~~s~--~~LaV~~ 209 (765)
|+.++ .+++|+.|++.+|.++.++..++ .|..|+.+. .++|.+.
T Consensus 208 ilS~s---------------------------------rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s 254 (406)
T KOG0295|consen 208 ILSCS---------------------------------RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS 254 (406)
T ss_pred eeecc---------------------------------cccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC
Confidence 55422 24789999999999999998764 788999887 5666655
Q ss_pred -CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCC
Q 004255 210 -ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (765)
Q Consensus 210 -~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp 288 (765)
+.+|++|-+.+++++..++.|.-| +..+++-|- .+|++. +-++..
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~-------------vEci~wap~-~~~~~i--------------------~~at~~ 300 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHP-------------VECIAWAPE-SSYPSI--------------------SEATGS 300 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccc-------------eEEEEeccc-ccCcch--------------------hhccCC
Confidence 457999999999888888876653 123444220 011110 000000
Q ss_pred CCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC
Q 004255 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH 368 (765)
Q Consensus 289 ~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH 368 (765)
.+ ++.....+..|++|++||+.++.++.+|.+|
T Consensus 301 ~~-----------------------------------------------~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh 333 (406)
T KOG0295|consen 301 TN-----------------------------------------------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH 333 (406)
T ss_pred CC-----------------------------------------------CccEEEeecccceEEEEeccCCeEEEEEecc
Confidence 00 0011235678999999999999999999999
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (765)
Q Consensus 369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las 448 (765)
...|..++|+|-|++|+++.+|+ ++||||++. + +++..+. .+..-++++.|..+.-++++
T Consensus 334 dnwVr~~af~p~Gkyi~ScaDDk-tlrvwdl~~-------~----------~cmk~~~--ah~hfvt~lDfh~~~p~VvT 393 (406)
T KOG0295|consen 334 DNWVRGVAFSPGGKYILSCADDK-TLRVWDLKN-------L----------QCMKTLE--AHEHFVTSLDFHKTAPYVVT 393 (406)
T ss_pred cceeeeeEEcCCCeEEEEEecCC-cEEEEEecc-------c----------eeeeccC--CCcceeEEEecCCCCceEEe
Confidence 99999999999999999999855 599999965 2 4666554 23446999999999999999
Q ss_pred EeCCCcEEEEe
Q 004255 449 VSSKGTCHVFV 459 (765)
Q Consensus 449 ~S~dgTVhIwd 459 (765)
|+-|.++++|.
T Consensus 394 GsVdqt~KvwE 404 (406)
T KOG0295|consen 394 GSVDQTVKVWE 404 (406)
T ss_pred ccccceeeeee
Confidence 99999999996
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=5.5e-18 Score=191.62 Aligned_cols=271 Identities=16% Similarity=0.206 Sum_probs=184.8
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (765)
Q Consensus 74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~ 152 (765)
.-++|++|..+| |.+|.+ +.-++...++-.+-+|..+.+. ..+..||+-+. .
T Consensus 276 ~t~~lvvgFssG~f~Lyel-P~f~lih~LSis~~~I~t~~~N-------------~tGDWiA~g~~-k------------ 328 (893)
T KOG0291|consen 276 GTNLLVVGFSSGEFGLYEL-PDFNLIHSLSISDQKILTVSFN-------------STGDWIAFGCS-K------------ 328 (893)
T ss_pred CceEEEEEecCCeeEEEec-CCceEEEEeecccceeeEEEec-------------ccCCEEEEcCC-c------------
Confidence 357899999998 789999 4456777788777788888766 23448886221 1
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEeC-CeEEEEECCCCceeEEEE
Q 004255 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVL 228 (765)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~~-~~I~iwD~~t~~~l~tl~ 228 (765)
-+.+-+|+.++..+|-..+.| ..+.+++.+| ++||+|.+ ++|+|||...+-|..|+.
T Consensus 329 -------------------lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt 389 (893)
T KOG0291|consen 329 -------------------LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT 389 (893)
T ss_pred -------------------cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec
Confidence 147999999999999888866 5899999998 48888765 589999999999999998
Q ss_pred ecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccc-cCCCCCCCCCCCCcCCCCCcceeeehhhhhhhh
Q 004255 229 TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRL-SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (765)
Q Consensus 229 t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~-s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~l 305 (765)
.|.+. +..+.|.- +.|-+++-+ |++ .||...+..--.-++|.--+++
T Consensus 390 eHts~-------------Vt~v~f~~~g~~llssSLD------GtVRAwDlkRYrNfRTft~P~p~Qfs----------- 439 (893)
T KOG0291|consen 390 EHTSG-------------VTAVQFTARGNVLLSSSLD------GTVRAWDLKRYRNFRTFTSPEPIQFS----------- 439 (893)
T ss_pred cCCCc-------------eEEEEEEecCCEEEEeecC------CeEEeeeecccceeeeecCCCceeee-----------
Confidence 88762 23333332 444444433 222 3443222111001111100000
Q ss_pred hcccceeecccccccCCCCCCCCccCCCccccccccccccCCC-CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEE
Q 004255 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA-GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLL 384 (765)
Q Consensus 306 a~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~d-G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lL 384 (765)
.++..+.+. -+..++.| -.|.||++++|+.+-.|.+|.+||.+|+|+|+|+.|
T Consensus 440 ----------------------cvavD~sGe----lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~L 493 (893)
T KOG0291|consen 440 ----------------------CVAVDPSGE----LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLL 493 (893)
T ss_pred ----------------------EEEEcCCCC----EEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeE
Confidence 000111111 01123333 479999999999999999999999999999999999
Q ss_pred EEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255 385 VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 385 ATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g 464 (765)
||+|. |++||+||+-.. .| .+-++. ....+..++|+|||+-||+++.||.|.+||++...
T Consensus 494 aS~SW-DkTVRiW~if~s-----~~-----------~vEtl~---i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 494 ASGSW-DKTVRIWDIFSS-----SG-----------TVETLE---IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred Eeccc-cceEEEEEeecc-----Cc-----------eeeeEe---eccceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 99999 567999998431 12 222332 12458999999999999999999999999998654
Q ss_pred CC
Q 004255 465 GD 466 (765)
Q Consensus 465 g~ 466 (765)
..
T Consensus 554 q~ 555 (893)
T KOG0291|consen 554 QV 555 (893)
T ss_pred ee
Confidence 43
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.9e-17 Score=188.93 Aligned_cols=237 Identities=18% Similarity=0.206 Sum_probs=177.4
Q ss_pred CCeEEEEEecCc-EEEEEccCCCc--ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCc
Q 004255 74 FKQVLLLGYQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR 150 (765)
Q Consensus 74 ~~~vL~~G~~~G-~qVWdv~~~g~--~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~ 150 (765)
+++.|+.+..++ +++|+.+. .. +...+..|.-.|..++|.|++ + .|+ ++.
T Consensus 170 ~g~~l~~~~~~~~i~~~~~~~-~~~~~~~~l~~h~~~v~~~~fs~d~-----------~--~l~--s~s----------- 222 (456)
T KOG0266|consen 170 DGRALAAASSDGLIRIWKLEG-IKSNLLRELSGHTRGVSDVAFSPDG-----------S--YLL--SGS----------- 222 (456)
T ss_pred CCCeEEEccCCCcEEEeeccc-ccchhhccccccccceeeeEECCCC-----------c--EEE--Eec-----------
Confidence 466788887766 89999944 44 555568888999999999863 1 343 221
Q ss_pred CCCCCcccCCcCCCCCCCCCCCCEEEEEEC-CCCeEEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeE
Q 004255 151 SHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-QSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKF 225 (765)
Q Consensus 151 ~~~~~~r~g~~~~~~~~~~~~p~tV~lWdl-ktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~ 225 (765)
.+.+|++||+ ..+..+++++.| ..|++++|++ ++|+.|. ++.|+|||++++++..
T Consensus 223 --------------------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~ 282 (456)
T KOG0266|consen 223 --------------------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR 282 (456)
T ss_pred --------------------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE
Confidence 2479999999 566899999865 6899999998 5777654 5689999999999999
Q ss_pred EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhh
Q 004255 226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (765)
Q Consensus 226 tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~l 305 (765)
.|.+|..+ ...++|++ +. ..
T Consensus 283 ~l~~hs~~-------------is~~~f~~-------d~---------------------------~~------------- 302 (456)
T KOG0266|consen 283 KLKGHSDG-------------ISGLAFSP-------DG---------------------------NL------------- 302 (456)
T ss_pred eeeccCCc-------------eEEEEECC-------CC---------------------------CE-------------
Confidence 99988763 22334422 11 00
Q ss_pred hcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc--EEEEeccCCCC--eEEEEECCCC
Q 004255 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSP--ISALCFDPSG 381 (765)
Q Consensus 306 a~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~--~i~~~~aH~~~--IsaLaFSpdG 381 (765)
+..++.||.|+|||+.++. ++..+..+..+ +++++|+|+|
T Consensus 303 ------------------------------------l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~ 346 (456)
T KOG0266|consen 303 ------------------------------------LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG 346 (456)
T ss_pred ------------------------------------EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC
Confidence 1123568999999999999 67888887666 9999999999
Q ss_pred CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc--cEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255 382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYSQWIAIVSSKGTCHVFV 459 (765)
Q Consensus 382 ~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a--~I~slaFSpDg~~Las~S~dgTVhIwd 459 (765)
.+|++++.|+ .+++||+.. + ..+..+ +|+... .+.+..++++++++.+++.|++|++|+
T Consensus 347 ~~ll~~~~d~-~~~~w~l~~-------~----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~ 407 (456)
T KOG0266|consen 347 KYLLSASLDR-TLKLWDLRS-------G----------KSVGTY-TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWD 407 (456)
T ss_pred cEEEEecCCC-eEEEEEccC-------C----------cceeee-cccCCcceeEecccccCCCCeEEEEeCCceEEEEe
Confidence 9999999954 599999964 2 122222 344332 456667789999999999999999999
Q ss_pred CCCCCCCcccccc
Q 004255 460 LSPFGGDSGFQTL 472 (765)
Q Consensus 460 l~~~gg~~~~~~h 472 (765)
+.+......+..|
T Consensus 408 ~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 408 SSSGGILQRLEGH 420 (456)
T ss_pred CCccchhhhhcCC
Confidence 9997667777787
No 18
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.81 E-value=1.5e-18 Score=196.16 Aligned_cols=113 Identities=21% Similarity=0.261 Sum_probs=95.7
Q ss_pred ccccCCCCeEEEEECCCCc-----EE----EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc
Q 004255 342 GADMDNAGIVVVKDFVTRA-----II----SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK 412 (765)
Q Consensus 342 ~~~~~~dG~V~IwDl~s~~-----~i----~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~ 412 (765)
++++++|+++++|++...+ .+ .+-.+|...|++++.+|+..++||||. |++.+||++.. +
T Consensus 427 fvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq-DktaKiW~le~-------~--- 495 (775)
T KOG0319|consen 427 FVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ-DKTAKIWDLEQ-------L--- 495 (775)
T ss_pred EEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccc-ccceeeecccC-------c---
Confidence 4578899999999997621 11 134589999999999999999999999 56699999953 2
Q ss_pred cccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccC
Q 004255 413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (765)
Q Consensus 413 ~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~ 474 (765)
+.+..| +||++ .|+|+.|++..+.||++|.|+||+||.|+++.+..++.+|.+
T Consensus 496 -------~l~~vL-sGH~R-Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~ 548 (775)
T KOG0319|consen 496 -------RLLGVL-SGHTR-GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS 548 (775)
T ss_pred -------eEEEEe-eCCcc-ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc
Confidence 466777 47665 499999999999999999999999999999999999999974
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.80 E-value=3.1e-18 Score=185.64 Aligned_cols=270 Identities=14% Similarity=0.146 Sum_probs=180.2
Q ss_pred EEEEEecC-cEEEEEccC-CCcceEeee--------ecc----CCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCC
Q 004255 77 VLLLGYQN-GFQVLDVED-ASNFNELVS--------KRD----GPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTN 142 (765)
Q Consensus 77 vL~~G~~~-G~qVWdv~~-~g~~~ells--------~~d----g~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~ 142 (765)
+|+.|..+ +.++|++.. ...+.+.+- .++ ..|.+|.+.- ++.+||+-..
T Consensus 193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~-------------~G~~LatG~~---- 255 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN-------------DGTLLATGSE---- 255 (524)
T ss_pred hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC-------------CCCeEEEeec----
Confidence 77777765 799999963 332322211 122 3488888773 3457765221
Q ss_pred CCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEE-EeCCeEEEEEC
Q 004255 143 TLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV-GLATQIYCFDA 218 (765)
Q Consensus 143 ~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV-~~~~~I~iwD~ 218 (765)
++.+|+|+. .|.++.+|.++ ++|++++.|+ .+|+. +-++++.+||+
T Consensus 256 -----------------------------~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~ 305 (524)
T KOG0273|consen 256 -----------------------------DGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA 305 (524)
T ss_pred -----------------------------CcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEec
Confidence 368999998 68888898765 7999999998 34554 55778999999
Q ss_pred CCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeeh
Q 004255 219 LTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA 298 (765)
Q Consensus 219 ~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a 298 (765)
.+++..+...-|..|.+ ++. -.+..-.|.++.+..+ .|.+.
T Consensus 306 ~~g~~~q~f~~~s~~~l------DVd------W~~~~~F~ts~td~~i--------------------------~V~kv- 346 (524)
T KOG0273|consen 306 HTGTVKQQFEFHSAPAL------DVD------WQSNDEFATSSTDGCI--------------------------HVCKV- 346 (524)
T ss_pred cCceEEEeeeeccCCcc------ceE------EecCceEeecCCCceE--------------------------EEEEe-
Confidence 99987666655544300 000 0111112223222100 01110
Q ss_pred hhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEC
Q 004255 299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFD 378 (765)
Q Consensus 299 ~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFS 378 (765)
-..+-.+|+.+|..+ .+++-.++.+ ..+++++.|++++||..........|.+|...|..+.|+
T Consensus 347 ------~~~~P~~t~~GH~g~------V~alk~n~tg----~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~ws 410 (524)
T KOG0273|consen 347 ------GEDRPVKTFIGHHGE------VNALKWNPTG----SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWS 410 (524)
T ss_pred ------cCCCcceeeecccCc------eEEEEECCCC----ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeec
Confidence 001111455554432 2222222222 235678899999999999999999999999999999999
Q ss_pred CC---------CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 004255 379 PS---------GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (765)
Q Consensus 379 pd---------G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~ 449 (765)
|+ |..||+++.|. ++++||+.. | .+++.|.+ |+.+|++++|||||+|||+|
T Consensus 411 p~g~v~~n~~~~~~l~sas~ds-tV~lwdv~~-------g----------v~i~~f~k--H~~pVysvafS~~g~ylAsG 470 (524)
T KOG0273|consen 411 PTGPVTSNPNMNLMLASASFDS-TVKLWDVES-------G----------VPIHTLMK--HQEPVYSVAFSPNGRYLASG 470 (524)
T ss_pred CCCCccCCCcCCceEEEeecCC-eEEEEEccC-------C----------ceeEeecc--CCCceEEEEecCCCcEEEec
Confidence 95 46899999955 599999965 4 68888865 35689999999999999999
Q ss_pred eCCCcEEEEeCCCCCCCcc
Q 004255 450 SSKGTCHVFVLSPFGGDSG 468 (765)
Q Consensus 450 S~dgTVhIwdl~~~gg~~~ 468 (765)
+.||-||||++..+.-...
T Consensus 471 s~dg~V~iws~~~~~l~~s 489 (524)
T KOG0273|consen 471 SLDGCVHIWSTKTGKLVKS 489 (524)
T ss_pred CCCCeeEeccccchheeEe
Confidence 9999999999987654433
No 20
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.4e-18 Score=183.45 Aligned_cols=248 Identities=16% Similarity=0.192 Sum_probs=186.3
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEE
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLL 133 (765)
++-.|..+-|-. ..-+.+++++++ +++||.. ++++.+.|.+|...|..|.+. ...-+|
T Consensus 107 ~r~~vt~v~~hp-------~~~~v~~as~d~tikv~D~~-tg~~e~~LrGHt~sv~di~~~-------------a~Gk~l 165 (406)
T KOG0295|consen 107 HRSSVTRVIFHP-------SEALVVSASEDATIKVFDTE-TGELERSLRGHTDSVFDISFD-------------ASGKYL 165 (406)
T ss_pred cccceeeeeecc-------CceEEEEecCCceEEEEEcc-chhhhhhhhccccceeEEEEe-------------cCccEE
Confidence 444555555522 345777777775 9999995 688989999999889988876 333355
Q ss_pred EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC-CeEEEEEeCCC-CEEEEEecC--CeEEEEe
Q 004255 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS-HCYEHVLRFRS-SVCMVRCSP--RIVAVGL 209 (765)
Q Consensus 134 avv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlkt-g~~v~tL~~~s-~V~sV~~s~--~~LaV~~ 209 (765)
|. +. ++-.+++||+.+ .++++.+..+. .|.+|.|-| ..|+.+.
T Consensus 166 ~t--cS-------------------------------sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~s 212 (406)
T KOG0295|consen 166 AT--CS-------------------------------SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCS 212 (406)
T ss_pred Ee--cC-------------------------------CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecc
Confidence 44 21 123499999986 57777776654 678888876 5666655
Q ss_pred -CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCC
Q 004255 210 -ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (765)
Q Consensus 210 -~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp 288 (765)
|+.|+.||+.|+.+++++..|+.+ +..+++ ..+
T Consensus 213 rD~tik~We~~tg~cv~t~~~h~ew-------------vr~v~v-------~~D-------------------------- 246 (406)
T KOG0295|consen 213 RDNTIKAWECDTGYCVKTFPGHSEW-------------VRMVRV-------NQD-------------------------- 246 (406)
T ss_pred cccceeEEecccceeEEeccCchHh-------------EEEEEe-------cCC--------------------------
Confidence 567999999999999998876652 222222 111
Q ss_pred CCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC
Q 004255 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH 368 (765)
Q Consensus 289 ~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH 368 (765)
|. -+++++.|.+|++|-+.++.+...|+.|
T Consensus 247 --Gt------------------------------------------------i~As~s~dqtl~vW~~~t~~~k~~lR~h 276 (406)
T KOG0295|consen 247 --GT------------------------------------------------IIASCSNDQTLRVWVVATKQCKAELREH 276 (406)
T ss_pred --ee------------------------------------------------EEEecCCCceEEEEEeccchhhhhhhcc
Confidence 00 0224567889999999999999999999
Q ss_pred CCCeEEEEECCC----------C-----CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccccc
Q 004255 369 TSPISALCFDPS----------G-----TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT 433 (765)
Q Consensus 369 ~~~IsaLaFSpd----------G-----~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~ 433 (765)
..+|-+++|-|. | .+|+++|.|+ +||+||+.+ | .+|++|. |+. ..
T Consensus 277 Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk-tIk~wdv~t-------g----------~cL~tL~-ghd-nw 336 (406)
T KOG0295|consen 277 EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK-TIKIWDVST-------G----------MCLFTLV-GHD-NW 336 (406)
T ss_pred ccceEEEEecccccCcchhhccCCCCCccEEEeecccc-eEEEEeccC-------C----------eEEEEEe-ccc-ce
Confidence 999999999762 3 5899999955 699999976 4 6899985 544 57
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccc
Q 004255 434 IQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (765)
Q Consensus 434 I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h 472 (765)
|.+++|+|-|+||+++.+|+|+||||++...+..++..|
T Consensus 337 Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah 375 (406)
T KOG0295|consen 337 VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH 375 (406)
T ss_pred eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC
Confidence 999999999999999999999999999998887766655
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.80 E-value=1.5e-17 Score=170.80 Aligned_cols=226 Identities=15% Similarity=0.207 Sum_probs=163.1
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (765)
Q Consensus 74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~ 152 (765)
+++..+.|..++ +++||++ .++....|.+|...|-.++|.|+ +|.+ |++.
T Consensus 74 dg~~alS~swD~~lrlWDl~-~g~~t~~f~GH~~dVlsva~s~d------------n~qi---vSGS------------- 124 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLA-TGESTRRFVGHTKDVLSVAFSTD------------NRQI---VSGS------------- 124 (315)
T ss_pred CCceEEeccccceEEEEEec-CCcEEEEEEecCCceEEEEecCC------------Ccee---ecCC-------------
Confidence 577778887776 8999995 67889999999999999999974 3443 3331
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC--CCCEEEEEecCC----eEEE-EeCCeEEEEECCCCceeE
Q 004255 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSPR----IVAV-GLATQIYCFDALTLENKF 225 (765)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~--~s~V~sV~~s~~----~LaV-~~~~~I~iwD~~t~~~l~ 225 (765)
-++|+++||...+......+. ++.|..|+|+|+ +|+. +.|..|++||+.+.+..+
T Consensus 125 ------------------rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~ 186 (315)
T KOG0279|consen 125 ------------------RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT 186 (315)
T ss_pred ------------------CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence 248999999986544444443 678999999995 4554 446689999999998877
Q ss_pred EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhh
Q 004255 226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (765)
Q Consensus 226 tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~l 305 (765)
+..+|..- .+.+++|| + |++
T Consensus 187 ~~~gh~~~-------------v~t~~vSp-------D----------------------------Gsl------------ 206 (315)
T KOG0279|consen 187 TFIGHSGY-------------VNTVTVSP-------D----------------------------GSL------------ 206 (315)
T ss_pred cccccccc-------------EEEEEECC-------C----------------------------CCE------------
Confidence 77665430 12344432 1 111
Q ss_pred hcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 004255 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV 385 (765)
Q Consensus 306 a~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLA 385 (765)
.++++.||.+.+||++.++.+..| .|..+|.+|+|+|+--.|+
T Consensus 207 ------------------------------------casGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~ 249 (315)
T KOG0279|consen 207 ------------------------------------CASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLC 249 (315)
T ss_pred ------------------------------------EecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEe
Confidence 123568999999999999997776 4678999999999987776
Q ss_pred EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---ccc--c--cccEEEEEEccCCCEEEEEeCCCcEEEE
Q 004255 386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGI--T--SATIQDICFSHYSQWIAIVSSKGTCHVF 458 (765)
Q Consensus 386 TaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~---rG~--~--~a~I~slaFSpDg~~Las~S~dgTVhIw 458 (765)
.|- ++.|+|||+.+. ..+.+|+ .|. . ...-.+++||+||+.|.++-.|+.|++|
T Consensus 250 ~at--~~sIkIwdl~~~-----------------~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 250 AAT--ATSIKIWDLESK-----------------AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred ecc--CCceEEEeccch-----------------hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 654 456999999762 1222221 111 0 1235678999999999999999999999
Q ss_pred eCCC
Q 004255 459 VLSP 462 (765)
Q Consensus 459 dl~~ 462 (765)
.+..
T Consensus 311 qv~~ 314 (315)
T KOG0279|consen 311 QVAK 314 (315)
T ss_pred Eeec
Confidence 8754
No 22
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.80 E-value=2.6e-17 Score=199.75 Aligned_cols=236 Identities=14% Similarity=0.212 Sum_probs=162.8
Q ss_pred CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
+..|++|..+| ++|||+. .++....+..|.+.|..+++.|. ...+|++ ++
T Consensus 545 ~~~las~~~Dg~v~lWd~~-~~~~~~~~~~H~~~V~~l~~~p~------------~~~~L~S-gs--------------- 595 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVA-RSQLVTEMKEHEKRVWSIDYSSA------------DPTLLAS-GS--------------- 595 (793)
T ss_pred CCEEEEEeCCCeEEEEECC-CCeEEEEecCCCCCEEEEEEcCC------------CCCEEEE-Ec---------------
Confidence 45677776665 9999995 46677778889999999999862 1225554 22
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEec---CCeEEEEe-CCeEEEEECCCCc-eeEEEE
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCS---PRIVAVGL-ATQIYCFDALTLE-NKFSVL 228 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s---~~~LaV~~-~~~I~iwD~~t~~-~l~tl~ 228 (765)
.+++|++||+++++.+.++..+..|.++.++ .++|++|. ++.|++||+.+.+ .+.++.
T Consensus 596 -----------------~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~ 658 (793)
T PLN00181 596 -----------------DDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI 658 (793)
T ss_pred -----------------CCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec
Confidence 1368999999999999999988899999985 36777765 5679999998765 234444
Q ss_pred ecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcc
Q 004255 229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (765)
Q Consensus 229 t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G 308 (765)
+|..+ . .++++....
T Consensus 659 ~h~~~-------------V-------~~v~f~~~~--------------------------------------------- 673 (793)
T PLN00181 659 GHSKT-------------V-------SYVRFVDSS--------------------------------------------- 673 (793)
T ss_pred CCCCC-------------E-------EEEEEeCCC---------------------------------------------
Confidence 44331 0 122222100
Q ss_pred cceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC------CcEEEEeccCCCCeEEEEECCCCC
Q 004255 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT------RAIISQFKAHTSPISALCFDPSGT 382 (765)
Q Consensus 309 ~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s------~~~i~~~~aH~~~IsaLaFSpdG~ 382 (765)
.+++++.||+|+|||+.. .+.+..|.+|...+.+++|+|+|.
T Consensus 674 --------------------------------~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~ 721 (793)
T PLN00181 674 --------------------------------TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG 721 (793)
T ss_pred --------------------------------EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC
Confidence 012345789999999974 357889999999999999999999
Q ss_pred EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255 383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 383 lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl 460 (765)
+||+|+.|+ .|+||+..... ....+... ....+..+.-..+...|.+++|+||+..|++++.||+|+||++
T Consensus 722 ~lasgs~D~-~v~iw~~~~~~-----~~~s~~~~-~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 722 YIATGSETN-EVFVYHKAFPM-----PVLSYKFK-TIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEeCCC-EEEEEECCCCC-----ceEEEecc-cCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999966 59999974310 00000000 0000000000112245999999999999999999999999996
No 23
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.80 E-value=3.2e-19 Score=186.92 Aligned_cols=230 Identities=17% Similarity=0.224 Sum_probs=170.5
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEE
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLL 133 (765)
.-+.|.+..+|. ..++.|.++ .++|||.++ -.+..+|.+|.|.|-|+++. .| +|
T Consensus 196 ~skgVYClQYDD---------~kiVSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd--------------~r-vi 250 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---------EKIVSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYD--------------ER-VI 250 (499)
T ss_pred cCCceEEEEecc---------hhhhcccccCceEEecccc-HHHHHhhhcCCCcEEeeecc--------------ce-EE
Confidence 445667666654 257778765 699999954 56889999999999999975 22 43
Q ss_pred EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEEEeCC-
Q 004255 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGLAT- 211 (765)
Q Consensus 134 avv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV~~~~- 211 (765)
++|. ++.||++||..+|++++++-++ ..|+.++|+..+++++..+
T Consensus 251 --isGS-------------------------------SDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDr 297 (499)
T KOG0281|consen 251 --VSGS-------------------------------SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDR 297 (499)
T ss_pred --EecC-------------------------------CCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCc
Confidence 3431 3469999999999999999776 5899999999998887755
Q ss_pred eEEEEECCCCc---eeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCC
Q 004255 212 QIYCFDALTLE---NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (765)
Q Consensus 212 ~I~iwD~~t~~---~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp 288 (765)
.|.+||+.... +.+.|.+|-. .++.+.|..+|
T Consensus 298 siaVWdm~sps~it~rrVLvGHrA-------------aVNvVdfd~ky-------------------------------- 332 (499)
T KOG0281|consen 298 SIAVWDMASPTDITLRRVLVGHRA-------------AVNVVDFDDKY-------------------------------- 332 (499)
T ss_pred eeEEEeccCchHHHHHHHHhhhhh-------------heeeeccccce--------------------------------
Confidence 69999976432 1112222221 01222222222
Q ss_pred CCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC
Q 004255 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH 368 (765)
Q Consensus 289 ~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH 368 (765)
+++++.|.++++|++.+++.+.++.+|
T Consensus 333 -----------------------------------------------------IVsASgDRTikvW~~st~efvRtl~gH 359 (499)
T KOG0281|consen 333 -----------------------------------------------------IVSASGDRTIKVWSTSTCEFVRTLNGH 359 (499)
T ss_pred -----------------------------------------------------EEEecCCceEEEEeccceeeehhhhcc
Confidence 224456789999999999999999999
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (765)
Q Consensus 369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las 448 (765)
.-.|.|+.+ .|+++++||. +.+||+||+.. | .+|..|. |+ ..-|.+|.|. .+.|++
T Consensus 360 kRGIAClQY--r~rlvVSGSS-DntIRlwdi~~-------G----------~cLRvLe-GH-EeLvRciRFd--~krIVS 415 (499)
T KOG0281|consen 360 KRGIACLQY--RDRLVVSGSS-DNTIRLWDIEC-------G----------ACLRVLE-GH-EELVRCIRFD--NKRIVS 415 (499)
T ss_pred cccceehhc--cCeEEEecCC-CceEEEEeccc-------c----------HHHHHHh-ch-HHhhhheeec--Cceeee
Confidence 999999887 5899999999 55699999964 4 4665554 53 3468999996 578999
Q ss_pred EeCCCcEEEEeCCCCC
Q 004255 449 VSSKGTCHVFVLSPFG 464 (765)
Q Consensus 449 ~S~dgTVhIwdl~~~g 464 (765)
|.-||+|+|||+...-
T Consensus 416 GaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 416 GAYDGKIKVWDLQAAL 431 (499)
T ss_pred ccccceEEEEeccccc
Confidence 9999999999998643
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.79 E-value=1.3e-17 Score=169.05 Aligned_cols=230 Identities=17% Similarity=0.176 Sum_probs=161.0
Q ss_pred CCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEeCCeEEEEECCCCce--eEEEEecCCcccCCCCccccccc
Q 004255 172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINVG 246 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~--l~tl~t~p~p~~~~~~~~~~~~~ 246 (765)
+.|||||...||.|..+++++ +.|-.+.+.+ +.||++.-..|++||+.+... +.++..|.. |
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k-----------N-- 85 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK-----------N-- 85 (311)
T ss_pred cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC-----------c--
Confidence 579999999999999999986 5787777776 789998888999999998753 445555433 1
Q ss_pred cceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCC--CCcCCCCCcceeeehhhhhhhhhcccceeecccccccCC
Q 004255 247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVS--PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 322 (765)
Q Consensus 247 ~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s--~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p 322 (765)
+..+.|-. ||+..++++.. ...|+...+...- ...+|-+.
T Consensus 86 VtaVgF~~dgrWMyTgseDgt-----~kIWdlR~~~~qR~~~~~spVn~------------------------------- 129 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGT-----VKIWDLRSLSCQRNYQHNSPVNT------------------------------- 129 (311)
T ss_pred eEEEEEeecCeEEEecCCCce-----EEEEeccCcccchhccCCCCcce-------------------------------
Confidence 22333333 99999988742 2246554321100 00011100
Q ss_pred CCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255 323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (765)
Q Consensus 323 ~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~ 401 (765)
...++++ .-+..++++|.|+|||+.+..+..++- .-..+|.+++..|||++|+.+-.+|+ ..||++..
T Consensus 130 ----vvlhpnQ------teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l~~ 198 (311)
T KOG0315|consen 130 ----VVLHPNQ------TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRLLN 198 (311)
T ss_pred ----EEecCCc------ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEccC
Confidence 0111111 013467899999999999887666654 44578999999999999999998887 89999965
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-CCCcccccccC
Q 004255 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF-GGDSGFQTLSS 474 (765)
Q Consensus 402 ~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~-gg~~~~~~h~~ 474 (765)
+.. .....++.+++. ++..|..+-||||+++||++|.|.|++||+++.+ +.+..+.+|..
T Consensus 199 ~~~-----------~s~l~P~~k~~a--h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r 259 (311)
T KOG0315|consen 199 HQT-----------ASELEPVHKFQA--HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR 259 (311)
T ss_pred CCc-----------cccceEhhheec--ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc
Confidence 311 111245555542 3456899999999999999999999999999988 77777788853
No 25
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.79 E-value=9.7e-18 Score=173.69 Aligned_cols=260 Identities=14% Similarity=0.094 Sum_probs=188.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
..+++.+|.-+.|+. .+.+|++|.-+ .|-+|++...-+-.-.+.+|.|.|-.+.+.++ +.
T Consensus 43 l~gh~geI~~~~F~P-------~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d------------~s 103 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHP-------DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD------------GS 103 (338)
T ss_pred cCCCcceEEEEEECC-------CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC------------CC
Confidence 677999999999976 25688887765 59999974222223467799999999998864 21
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEE-EEEe---cCCeEE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVC-MVRC---SPRIVA 206 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~-sV~~---s~~~La 206 (765)
.|+. ++ .+++|+.||.++|+++..++.+..+. ++.- ++.+|.
T Consensus 104 -~i~S-~g--------------------------------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~ 149 (338)
T KOG0265|consen 104 -HILS-CG--------------------------------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVC 149 (338)
T ss_pred -EEEE-ec--------------------------------CCceEEEEecccceeeehhccccceeeecCccccCCeEEE
Confidence 3333 22 25899999999999999998876543 4433 335677
Q ss_pred EEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCC
Q 004255 207 VGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (765)
Q Consensus 207 V~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s 285 (765)
.+.+ +++++||+++-+..+++. ++ |...|+ ++....
T Consensus 150 SgsdD~t~kl~D~R~k~~~~t~~---~k-------------yqltAv-----~f~d~s---------------------- 186 (338)
T KOG0265|consen 150 SGSDDGTLKLWDIRKKEAIKTFE---NK-------------YQLTAV-----GFKDTS---------------------- 186 (338)
T ss_pred ecCCCceEEEEeecccchhhccc---cc-------------eeEEEE-----Eecccc----------------------
Confidence 6654 579999999776655542 21 112222 111100
Q ss_pred cCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 004255 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (765)
Q Consensus 286 ~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~ 365 (765)
- .+.++.-|+.|++||+.......++
T Consensus 187 -----------------~-------------------------------------qv~sggIdn~ikvWd~r~~d~~~~l 212 (338)
T KOG0265|consen 187 -----------------D-------------------------------------QVISGGIDNDIKVWDLRKNDGLYTL 212 (338)
T ss_pred -----------------c-------------------------------------ceeeccccCceeeeccccCcceEEe
Confidence 0 0113456889999999999999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc--cEEEEEEccCC
Q 004255 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYS 443 (765)
Q Consensus 366 ~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a--~I~slaFSpDg 443 (765)
.+|..+|..|..+|+|.+|.+-+.| .++++||++|. ....+++..+..+.++- ....++|||++
T Consensus 213 sGh~DtIt~lsls~~gs~llsnsMd-~tvrvwd~rp~-------------~p~~R~v~if~g~~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 213 SGHADTITGLSLSRYGSFLLSNSMD-NTVRVWDVRPF-------------APSQRCVKIFQGHIHNFEKNLLKCSWSPNG 278 (338)
T ss_pred ecccCceeeEEeccCCCcccccccc-ceEEEEEeccc-------------CCCCceEEEeecchhhhhhhcceeeccCCC
Confidence 9999999999999999999999994 56999999873 22234566665444432 35678999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCcccccccCC
Q 004255 444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ 475 (765)
Q Consensus 444 ~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~~ 475 (765)
+++.++|.|..+++||....+....+.+|...
T Consensus 279 ~~i~ags~dr~vyvwd~~~r~~lyklpGh~gs 310 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDTTSRRILYKLPGHYGS 310 (338)
T ss_pred CccccccccceEEEeecccccEEEEcCCccee
Confidence 99999999999999999887777777788643
No 26
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.79 E-value=1.6e-16 Score=174.18 Aligned_cols=319 Identities=14% Similarity=0.170 Sum_probs=203.9
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeee---eccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVS---KRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells---~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
+|..=|..++|.. | ..++..+|.++.+.+||=. +|+..-.|. .|.|.|..|.++|+. +
T Consensus 188 ~HskFV~~VRysP----D--G~~Fat~gsDgki~iyDGk-tge~vg~l~~~~aHkGsIfalsWsPDs-----------~- 248 (603)
T KOG0318|consen 188 EHSKFVNCVRYSP----D--GSRFATAGSDGKIYIYDGK-TGEKVGELEDSDAHKGSIFALSWSPDS-----------T- 248 (603)
T ss_pred ccccceeeEEECC----C--CCeEEEecCCccEEEEcCC-CccEEEEecCCCCccccEEEEEECCCC-----------c-
Confidence 3444577777755 2 1344445555559999974 565555555 788999999999962 2
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEE-----EEEecCCeE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVC-----MVRCSPRIV 205 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~-----sV~~s~~~L 205 (765)
.+|.+++ +.+++|||+.+++++.++.+.+.|. .+--+..+|
T Consensus 249 -~~~T~Sa---------------------------------Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lI 294 (603)
T KOG0318|consen 249 -QFLTVSA---------------------------------DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLI 294 (603)
T ss_pred -eEEEecC---------------------------------CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEE
Confidence 3555443 3689999999999999999877653 233355788
Q ss_pred EEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceec--CCccccCCCCCCCC
Q 004255 206 AVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLS--NSGRLSPQNLTPSG 281 (765)
Q Consensus 206 aV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~--~~G~~s~~~lt~~~ 281 (765)
.|++.+.|.++++.++..++++.+|... ...+++++ .+|-+++.+..+. ..|...-+.+.+.
T Consensus 295 tVSl~G~in~ln~~d~~~~~~i~GHnK~-------------ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~- 360 (603)
T KOG0318|consen 295 TVSLSGTINYLNPSDPSVLKVISGHNKS-------------ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGK- 360 (603)
T ss_pred EEEcCcEEEEecccCCChhheecccccc-------------eeEEEEcCCCCEEEeeccCceEEEEecCCccccccccc-
Confidence 8999999999999999999999888652 45678877 7888887775432 2221111111100
Q ss_pred CCCCcCCCCCcceeeehhhhhhhhh-cccceee-------ccccccc-------------CCC-----------------
Q 004255 282 VSPSTSPGGSSLVARYAMEHSKQFA-AGLSKTL-------SKYCQEL-------------LPD----------------- 323 (765)
Q Consensus 282 ~s~s~sp~~gslva~~a~d~~k~la-~G~~ktl-------s~~~~~~-------------~p~----------------- 323 (765)
.. +..+.+.+.....++. .|.-.+| .+|.... .++
T Consensus 361 --~h-----~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~ 433 (603)
T KOG0318|consen 361 --GH-----TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQD 433 (603)
T ss_pred --cc-----cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEec
Confidence 00 0111111111000000 0000000 0010000 000
Q ss_pred ---------CC-CCCccCCCccccccccccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEECCCCCEEEEEEcCC
Q 004255 324 ---------GS-SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDPSGTLLVTASVYG 391 (765)
Q Consensus 324 ---------~s-~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~--~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG 391 (765)
+. ......+++ ....+-+++||.|+||.+..+. ....+..|..+|++++|||||++||.+...+
T Consensus 434 ~~~~~~~~~~y~~s~vAv~~~----~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~r 509 (603)
T KOG0318|consen 434 QTKVSSIPIGYESSAVAVSPD----GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASR 509 (603)
T ss_pred CCcceeeccccccceEEEcCC----CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCC
Confidence 00 011111111 1123467899999999998754 3446778999999999999999999999966
Q ss_pred CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccc
Q 004255 392 NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 469 (765)
Q Consensus 392 t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~ 469 (765)
. +-+||+... ....-+.+.|.+.|.+++||||.++||+||.|-.|+||+++.......+
T Consensus 510 k-vv~yd~~s~------------------~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~i 568 (603)
T KOG0318|consen 510 K-VVLYDVASR------------------EVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIII 568 (603)
T ss_pred c-EEEEEcccC------------------ceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEe
Confidence 5 889999652 2222334556789999999999999999999999999999887665544
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.78 E-value=2.3e-17 Score=188.14 Aligned_cols=187 Identities=22% Similarity=0.294 Sum_probs=147.4
Q ss_pred CCEEEEEECCCCe--EEEEEe-CCCCEEEEEecC--CeEEEEe-CCeEEEEEC-CCCceeEEEEecCCcccCCCCccccc
Q 004255 172 PTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDA-LTLENKFSVLTYPVPQLAGQGAVGIN 244 (765)
Q Consensus 172 p~tV~lWdlktg~--~v~tL~-~~s~V~sV~~s~--~~LaV~~-~~~I~iwD~-~t~~~l~tl~t~p~p~~~~~~~~~~~ 244 (765)
++++++|++.+++ ..+++. +...|.+++|++ ++|+.+. |.+|+|||+ ..+.+++++.+|+.+
T Consensus 180 ~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~----------- 248 (456)
T KOG0266|consen 180 DGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY----------- 248 (456)
T ss_pred CCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc-----------
Confidence 4789999998777 677764 445899999988 5777665 458999999 566889999998873
Q ss_pred cccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCC
Q 004255 245 VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (765)
Q Consensus 245 ~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~ 324 (765)
...++|.| . + .+
T Consensus 249 --v~~~~f~p-------~---------------------------g-~~------------------------------- 260 (456)
T KOG0266|consen 249 --VTSVAFSP-------D---------------------------G-NL------------------------------- 260 (456)
T ss_pred --eEEEEecC-------C---------------------------C-CE-------------------------------
Confidence 23344432 0 0 01
Q ss_pred CCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc
Q 004255 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 404 (765)
Q Consensus 325 s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~ 404 (765)
+.+++.|++|+|||+.+++++..|.+|.++|++++|+++|.+|+++|.|+ .|+|||+..
T Consensus 261 -----------------i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~-~i~vwd~~~--- 319 (456)
T KOG0266|consen 261 -----------------LVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDG-TIRVWDLET--- 319 (456)
T ss_pred -----------------EEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCc-cEEEEECCC---
Confidence 12456789999999999999999999999999999999999999999855 599999965
Q ss_pred cCCCCCCccccCCcce--EEEEEecccccc-cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255 405 RSGSGNHKYDWNSSHV--HLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 405 ~~~sG~~~~~~~~s~~--~l~~l~rG~~~a-~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
+ . ++..+. +.... .++++.|+|++++|++++.|+++++||+..........+|.
T Consensus 320 ----~----------~~~~~~~~~-~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~ 376 (456)
T KOG0266|consen 320 ----G----------SKLCLKLLS-GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHS 376 (456)
T ss_pred ----C----------ceeeeeccc-CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccC
Confidence 3 2 233443 33444 69999999999999999999999999999877777777775
No 28
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.78 E-value=2e-16 Score=192.04 Aligned_cols=245 Identities=13% Similarity=0.097 Sum_probs=167.1
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC---Ccc---eEeeeeccCCEEEEEEecCCCCCCCCCCcc
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA---SNF---NELVSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~---g~~---~ells~~dg~V~~v~~lP~p~~~~~~d~f~ 127 (765)
+.+.|.-+.|+. .+++|++|..+| ++|||++.. +.. ....-.+...|..+.+.|. .
T Consensus 482 ~~~~V~~i~fs~-------dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----------~ 544 (793)
T PLN00181 482 SSNLVCAIGFDR-------DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSY----------I 544 (793)
T ss_pred CCCcEEEEEECC-------CCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccC----------C
Confidence 667788888875 256788877766 999998431 100 0001112356777777652 1
Q ss_pred ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---C
Q 004255 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---R 203 (765)
Q Consensus 128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~ 203 (765)
..+||+.. .+++|+|||+.+++.+..+..+ ..|++|++++ .
T Consensus 545 --~~~las~~---------------------------------~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~ 589 (793)
T PLN00181 545 --KSQVASSN---------------------------------FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPT 589 (793)
T ss_pred --CCEEEEEe---------------------------------CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCC
Confidence 22555421 1369999999999999998765 6899999975 5
Q ss_pred eEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCC
Q 004255 204 IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (765)
Q Consensus 204 ~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~ 282 (765)
+|++|. ++.|++||+.+++++.++..+.. ...++ +...+
T Consensus 590 ~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~--------------v~~v~-------~~~~~------------------- 629 (793)
T PLN00181 590 LLASGSDDGSVKLWSINQGVSIGTIKTKAN--------------ICCVQ-------FPSES------------------- 629 (793)
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEecCCC--------------eEEEE-------EeCCC-------------------
Confidence 677655 56899999999887776653211 01111 21110
Q ss_pred CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc-E
Q 004255 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-I 361 (765)
Q Consensus 283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~-~ 361 (765)
+. .++.+..||.|++||+.+.+ .
T Consensus 630 --------g~------------------------------------------------~latgs~dg~I~iwD~~~~~~~ 653 (793)
T PLN00181 630 --------GR------------------------------------------------SLAFGSADHKVYYYDLRNPKLP 653 (793)
T ss_pred --------CC------------------------------------------------EEEEEeCCCeEEEEECCCCCcc
Confidence 00 01234578999999998866 5
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 004255 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (765)
Q Consensus 362 i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp 441 (765)
+..+.+|...|.+++|. ++.+|+|+|.|+ .|+|||+..... + .....+..+. |+ ...+.+++|+|
T Consensus 654 ~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~-~ikiWd~~~~~~----~-------~~~~~l~~~~-gh-~~~i~~v~~s~ 718 (793)
T PLN00181 654 LCTMIGHSKTVSYVRFV-DSSTLVSSSTDN-TLKLWDLSMSIS----G-------INETPLHSFM-GH-TNVKNFVGLSV 718 (793)
T ss_pred ceEecCCCCCEEEEEEe-CCCEEEEEECCC-EEEEEeCCCCcc----c-------cCCcceEEEc-CC-CCCeeEEEEcC
Confidence 67889999999999997 788999999966 599999854110 0 0012455553 43 35689999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCC
Q 004255 442 YSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 442 Dg~~Las~S~dgTVhIwdl~~ 462 (765)
++++||+++.|++|+||+...
T Consensus 719 ~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 719 SDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred CCCEEEEEeCCCEEEEEECCC
Confidence 999999999999999999753
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.78 E-value=4.6e-17 Score=184.25 Aligned_cols=248 Identities=17% Similarity=0.201 Sum_probs=173.5
Q ss_pred CCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCC
Q 004255 71 PSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQN 149 (765)
Q Consensus 71 ~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~ 149 (765)
.+.+++++++|..+| ++|||.. .|-|..+++.|...|..+++... ...|+..+
T Consensus 358 YSpDgq~iaTG~eDgKVKvWn~~-SgfC~vTFteHts~Vt~v~f~~~-------------g~~llssS------------ 411 (893)
T KOG0291|consen 358 YSPDGQLIATGAEDGKVKVWNTQ-SGFCFVTFTEHTSGVTAVQFTAR-------------GNVLLSSS------------ 411 (893)
T ss_pred ECCCCcEEEeccCCCcEEEEecc-CceEEEEeccCCCceEEEEEEec-------------CCEEEEee------------
Confidence 345799999999998 9999995 68899999999999999998742 22443322
Q ss_pred cCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCE--EEEEecC--CeEEEEeCC--eEEEEECCCCce
Q 004255 150 RSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSV--CMVRCSP--RIVAVGLAT--QIYCFDALTLEN 223 (765)
Q Consensus 150 ~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V--~sV~~s~--~~LaV~~~~--~I~iwD~~t~~~ 223 (765)
.+++||.||++....-+++..+.++ .+|+..+ .+|++|..+ .|++|+++||++
T Consensus 412 ---------------------LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql 470 (893)
T KOG0291|consen 412 ---------------------LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL 470 (893)
T ss_pred ---------------------cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee
Confidence 2479999999999999999998877 3555554 666666555 499999999999
Q ss_pred eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhh
Q 004255 224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK 303 (765)
Q Consensus 224 l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k 303 (765)
+..|.+|..| +..++|+| .+.
T Consensus 471 lDiLsGHEgP-------------Vs~l~f~~----------------------------------~~~------------ 491 (893)
T KOG0291|consen 471 LDILSGHEGP-------------VSGLSFSP----------------------------------DGS------------ 491 (893)
T ss_pred eehhcCCCCc-------------ceeeEEcc----------------------------------ccC------------
Confidence 9999998775 12234432 101
Q ss_pred hhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc-EEEEeccCCCCeEEEEECCCCC
Q 004255 304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGT 382 (765)
Q Consensus 304 ~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~-~i~~~~aH~~~IsaLaFSpdG~ 382 (765)
.+++++-|.+|++||+-... .+.+| .+.+.+.+++|+|||+
T Consensus 492 -------------------------------------~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~ 533 (893)
T KOG0291|consen 492 -------------------------------------LLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGK 533 (893)
T ss_pred -------------------------------------eEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCC
Confidence 01234567899999986543 33344 4567899999999999
Q ss_pred EEEEEEcCCCEEEEEeCCCCccc-CCCCCCccccCCcc--eEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255 383 LLVTASVYGNNINIFRIMPSCMR-SGSGNHKYDWNSSH--VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (765)
Q Consensus 383 lLATaS~dGt~IrVWdi~~~~~~-~~sG~~~~~~~~s~--~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwd 459 (765)
-||.+..||. |.+||+...... +-.|.. +..+.. .....-+.......++.|++|+||.+|.+|+....|.||+
T Consensus 534 elaVaTldgq-Itf~d~~~~~q~~~Idgrk--D~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 534 ELAVATLDGQ-ITFFDIKEAVQVGSIDGRK--DLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred eEEEEEecce-EEEEEhhhceeeccccchh--hccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 9999999775 999998753211 111110 000000 0001111011113589999999999999999999999999
Q ss_pred CCCCCC
Q 004255 460 LSPFGG 465 (765)
Q Consensus 460 l~~~gg 465 (765)
+...--
T Consensus 611 v~~~vl 616 (893)
T KOG0291|consen 611 VPEGVL 616 (893)
T ss_pred Cchhhe
Confidence 986433
No 30
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.7e-17 Score=189.74 Aligned_cols=260 Identities=15% Similarity=0.180 Sum_probs=179.7
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (765)
Q Consensus 74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~ 152 (765)
.+-.++++--+| ||+||.- -+.+.+-+..|||||+.|.|-| .+||. |+|++
T Consensus 20 ~rPwILtslHsG~IQlWDYR-M~tli~rFdeHdGpVRgv~FH~-------------~qplF--VSGGD------------ 71 (1202)
T KOG0292|consen 20 KRPWILTSLHSGVIQLWDYR-MGTLIDRFDEHDGPVRGVDFHP-------------TQPLF--VSGGD------------ 71 (1202)
T ss_pred CCCEEEEeecCceeeeehhh-hhhHHhhhhccCCccceeeecC-------------CCCeE--EecCC------------
Confidence 466888888887 9999994 6778888999999999999775 46776 44432
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCC--eEEEEeC-CeEEEEECCCCceeEEEE
Q 004255 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAVGLA-TQIYCFDALTLENKFSVL 228 (765)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~--~LaV~~~-~~I~iwD~~t~~~l~tl~ 228 (765)
+-+|++|+.++.+++-+|..| +-|..+.|.+. .|+++.| .+|+||+-.+.+++-++.
T Consensus 72 -------------------DykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt 132 (1202)
T KOG0292|consen 72 -------------------DYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT 132 (1202)
T ss_pred -------------------ccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe
Confidence 359999999999999999876 79999999983 5666555 569999999999999998
Q ss_pred ecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhh
Q 004255 229 TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (765)
Q Consensus 229 t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la 306 (765)
+|--= +-+..|.| ..+++++-+- .++.||.-
T Consensus 133 GHnHY-------------VMcAqFhptEDlIVSaSLDQ-----TVRVWDis----------------------------- 165 (1202)
T KOG0292|consen 133 GHNHY-------------VMCAQFHPTEDLIVSASLDQ-----TVRVWDIS----------------------------- 165 (1202)
T ss_pred cCceE-------------EEeeccCCccceEEEecccc-----eEEEEeec-----------------------------
Confidence 76430 11234555 5666665431 22233321
Q ss_pred cccceeecccccccCCCCCCCCccCCCccccccccc---cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCE
Q 004255 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG---ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTL 383 (765)
Q Consensus 307 ~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~---~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~l 383 (765)
|+.|. ..+++ +... .+.+.++ ..+..|-. +...+.+|+-.|+.++|+|.--+
T Consensus 166 -GLRkk-------~~~pg-----~~e~--~~~~~~~~~dLfg~~DaV----------VK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 166 -GLRKK-------NKAPG-----SLED--QMRGQQGNSDLFGQTDAV----------VKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred -chhcc-------CCCCC-----Cchh--hhhccccchhhcCCcCee----------eeeeecccccccceEEecCCcce
Confidence 11100 00000 0000 0000000 01111222 23457899999999999999999
Q ss_pred EEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 384 LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 384 LATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
+++|++ |..|++|..... ..+.+-.+ ||+. ..|.++-|+|....|.+.|.|++|+|||++..
T Consensus 221 iVSG~D-DRqVKlWrmnet---------------KaWEvDtc-rgH~-nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 221 IVSGAD-DRQVKLWRMNET---------------KAWEVDTC-RGHY-NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred EEecCC-cceeeEEEeccc---------------cceeehhh-hccc-CCcceEEecCccceeEecCCCccEEEEecccc
Confidence 999998 677999998431 12444344 6765 46999999999999999999999999999998
Q ss_pred CCCcccc
Q 004255 464 GGDSGFQ 470 (765)
Q Consensus 464 gg~~~~~ 470 (765)
.+..+++
T Consensus 283 t~v~tfr 289 (1202)
T KOG0292|consen 283 TSVQTFR 289 (1202)
T ss_pred cceeeee
Confidence 8877764
No 31
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.77 E-value=2.8e-17 Score=173.21 Aligned_cols=223 Identities=17% Similarity=0.250 Sum_probs=179.0
Q ss_pred CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
.+.+++|..++ ++|||+ .+|.+.-+|-+|-..|+.|++++ .+|+|.. +++
T Consensus 163 n~wf~tgs~DrtikIwDl-atg~LkltltGhi~~vr~vavS~-------------rHpYlFs-~ge-------------- 213 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDL-ATGQLKLTLTGHIETVRGVAVSK-------------RHPYLFS-AGE-------------- 213 (460)
T ss_pred ceeEEecCCCceeEEEEc-ccCeEEEeecchhheeeeeeecc-------------cCceEEE-ecC--------------
Confidence 67999999886 999999 57889889999999999999884 4788754 332
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t 229 (765)
++.|+-|||..++.|+.+-.+ +.|++++..| ++|+.|. |..|++||++|-...+++.+
T Consensus 214 ------------------dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 214 ------------------DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred ------------------CCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC
Confidence 368999999999999888765 8999999998 6777655 55799999999999999999
Q ss_pred cCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccc
Q 004255 230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (765)
Q Consensus 230 ~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~ 309 (765)
|.+|. ..+.+ -+.++
T Consensus 276 H~~~V-------------~~V~~------~~~dp---------------------------------------------- 290 (460)
T KOG0285|consen 276 HTNPV-------------ASVMC------QPTDP---------------------------------------------- 290 (460)
T ss_pred CCCcc-------------eeEEe------ecCCC----------------------------------------------
Confidence 88851 11111 11110
Q ss_pred ceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 004255 310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV 389 (765)
Q Consensus 310 ~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~ 389 (765)
++.+++.|++|++||+..++...++..|...|.|++.+|.-.++|+||.
T Consensus 291 -------------------------------qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~ 339 (460)
T KOG0285|consen 291 -------------------------------QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP 339 (460)
T ss_pred -------------------------------ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC
Confidence 1224578999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 390 YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 390 dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
| .|+-|++-. | ..+..+. | +++.|.+++...|| ++++|+++|++..||...
T Consensus 340 d--nik~w~~p~-------g----------~f~~nls-g-h~~iintl~~nsD~-v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 340 D--NIKQWKLPE-------G----------EFLQNLS-G-HNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred c--cceeccCCc-------c----------chhhccc-c-ccceeeeeeeccCc-eEEEcCCceEEEEEecCc
Confidence 4 399999832 3 3444443 4 45779999999887 778999999999999876
No 32
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=2.8e-17 Score=185.88 Aligned_cols=225 Identities=20% Similarity=0.289 Sum_probs=178.6
Q ss_pred CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
.+.+++|+++| ++|||+. +..+.|+...|+|.+..|+.+|+. +-++ .++
T Consensus 424 d~~Iv~G~k~Gel~vfdla-S~~l~Eti~AHdgaIWsi~~~pD~------------~g~v-T~s---------------- 473 (888)
T KOG0306|consen 424 DRYIVLGTKNGELQVFDLA-SASLVETIRAHDGAIWSISLSPDN------------KGFV-TGS---------------- 473 (888)
T ss_pred CceEEEeccCCceEEEEee-hhhhhhhhhccccceeeeeecCCC------------CceE-Eec----------------
Confidence 57899999998 9999995 566778888999999999999862 1232 211
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCC-----CeE--------EEEEeCCCCEEEEEecC--CeEEEEe-CCeEEEEE
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQS-----HCY--------EHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFD 217 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlkt-----g~~--------v~tL~~~s~V~sV~~s~--~~LaV~~-~~~I~iwD 217 (765)
.+++|+|||++- |.. -++|++...|++|+++| ++|||++ +++|++|.
T Consensus 474 -----------------aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyf 536 (888)
T KOG0306|consen 474 -----------------ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYF 536 (888)
T ss_pred -----------------CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEE
Confidence 247999999752 221 24677889999999997 8999987 66899999
Q ss_pred CCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeee
Q 004255 218 ALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARY 297 (765)
Q Consensus 218 ~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~ 297 (765)
+.|++-.-+|.+|..| +.+|.++|. + .
T Consensus 537 lDtlKFflsLYGHkLP-------------V~smDIS~D-----S-k---------------------------------- 563 (888)
T KOG0306|consen 537 LDTLKFFLSLYGHKLP-------------VLSMDISPD-----S-K---------------------------------- 563 (888)
T ss_pred ecceeeeeeecccccc-------------eeEEeccCC-----c-C----------------------------------
Confidence 9999988899999886 245555330 0 0
Q ss_pred hhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE
Q 004255 298 AMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF 377 (765)
Q Consensus 298 a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaF 377 (765)
.+++++.|..|+||-+.=|.|-..|-||+..|.++.|
T Consensus 564 -------------------------------------------livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F 600 (888)
T KOG0306|consen 564 -------------------------------------------LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQF 600 (888)
T ss_pred -------------------------------------------eEEeccCCCceEEeccccchhhhhhhcccCceeEEEE
Confidence 0124567889999999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEE
Q 004255 378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (765)
Q Consensus 378 SpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhI 457 (765)
-|+..++.||+.|+. |+-||-.. ..++.+|. |++ ..|+|++-+|+|.+++++|.|.+|++
T Consensus 601 ~P~~~~FFt~gKD~k-vKqWDg~k-----------------Fe~iq~L~-~H~-~ev~cLav~~~G~~vvs~shD~sIRl 660 (888)
T KOG0306|consen 601 LPKTHLFFTCGKDGK-VKQWDGEK-----------------FEEIQKLD-GHH-SEVWCLAVSPNGSFVVSSSHDKSIRL 660 (888)
T ss_pred cccceeEEEecCcce-EEeechhh-----------------hhhheeec-cch-heeeeeEEcCCCCeEEeccCCceeEe
Confidence 999999999999665 99999532 24666675 444 57999999999999999999999999
Q ss_pred EeCCC
Q 004255 458 FVLSP 462 (765)
Q Consensus 458 wdl~~ 462 (765)
|.-..
T Consensus 661 wE~td 665 (888)
T KOG0306|consen 661 WERTD 665 (888)
T ss_pred eeccC
Confidence 98754
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.76 E-value=2.7e-17 Score=187.63 Aligned_cols=182 Identities=14% Similarity=0.139 Sum_probs=139.9
Q ss_pred EEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeE
Q 004255 176 RFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMA 251 (765)
Q Consensus 176 ~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~A 251 (765)
..-|..+.....+|-.| ++|+.++|+| ++|+.+.+ ..|++|.+.|..++-...+|--| ++-+.
T Consensus 434 ~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P-------------VwdV~ 500 (707)
T KOG0263|consen 434 DMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP-------------VWDVQ 500 (707)
T ss_pred hhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcc-------------eeeEE
Confidence 33444444444455444 6999999998 67887776 57999999998877666666543 23344
Q ss_pred EccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccC
Q 004255 252 VGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSP 331 (765)
Q Consensus 252 lspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~ 331 (765)
|+|+-.
T Consensus 501 F~P~Gy-------------------------------------------------------------------------- 506 (707)
T KOG0263|consen 501 FAPRGY-------------------------------------------------------------------------- 506 (707)
T ss_pred ecCCce--------------------------------------------------------------------------
Confidence 444200
Q ss_pred CCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCC
Q 004255 332 NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411 (765)
Q Consensus 332 s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~ 411 (765)
..++++.|++.++|......++..|.+|.+.|.|++|+|+..|+||||. ++++|+||+.+ |
T Consensus 507 ---------YFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs-D~tVRlWDv~~-------G-- 567 (707)
T KOG0263|consen 507 ---------YFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSS-DRTVRLWDVST-------G-- 567 (707)
T ss_pred ---------EEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCC-CceEEEEEcCC-------C--
Confidence 1224567889999999999999999999999999999999999999999 56799999976 4
Q ss_pred ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 412 ~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
..+..| .|+ .++|.+|+|||+|+|||+|+.||.|+|||+....-...+++|+
T Consensus 568 --------~~VRiF-~GH-~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht 619 (707)
T KOG0263|consen 568 --------NSVRIF-TGH-KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHT 619 (707)
T ss_pred --------cEEEEe-cCC-CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhccc
Confidence 233333 574 4689999999999999999999999999998766666778884
No 34
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.75 E-value=1.5e-17 Score=177.71 Aligned_cols=247 Identities=16% Similarity=0.242 Sum_probs=168.3
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (765)
Q Consensus 74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~ 152 (765)
.++-|++|++.| |-+|+.. .-+++-++..||.+|++|+++++ ...+ +++|.
T Consensus 107 eGRRLltgs~SGEFtLWNg~-~fnFEtilQaHDs~Vr~m~ws~~-------------g~wm--iSgD~------------ 158 (464)
T KOG0284|consen 107 EGRRLLTGSQSGEFTLWNGT-SFNFETILQAHDSPVRTMKWSHN-------------GTWM--ISGDK------------ 158 (464)
T ss_pred CCceeEeecccccEEEecCc-eeeHHHHhhhhcccceeEEEccC-------------CCEE--EEcCC------------
Confidence 356777888776 9999984 55677889999999999999954 2354 34543
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CC-CCEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEE
Q 004255 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FR-SSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSV 227 (765)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~-~~-s~V~sV~~s~---~~LaV~~~~~I~iwD~~t~~~l~tl 227 (765)
.+.|++|+..- ..|+.+. .+ ..|.+++|++ +++.++.++.|+|||....+....|
T Consensus 159 -------------------gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL 218 (464)
T KOG0284|consen 159 -------------------GGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL 218 (464)
T ss_pred -------------------CceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee
Confidence 36899999854 3344444 34 5899999998 4555566678999998776655555
Q ss_pred EecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhc
Q 004255 228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (765)
Q Consensus 228 ~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~ 307 (765)
.+|-- .+.++++.| . +
T Consensus 219 ~GHgw-------------dVksvdWHP-------~--------------------------------------------k 234 (464)
T KOG0284|consen 219 RGHGW-------------DVKSVDWHP-------T--------------------------------------------K 234 (464)
T ss_pred ccCCC-------------CcceeccCC-------c--------------------------------------------c
Confidence 44321 011222221 0 0
Q ss_pred ccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEE
Q 004255 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTA 387 (765)
Q Consensus 308 G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATa 387 (765)
| -+++++.|..|++||.+++.++.++.+|+..|.++.|+|+|++|+|+
T Consensus 235 g--------------------------------LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~ 282 (464)
T KOG0284|consen 235 G--------------------------------LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTG 282 (464)
T ss_pred c--------------------------------eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEc
Confidence 0 12245567799999999999999999999999999999999999999
Q ss_pred EcCCCEEEEEeCCCCc----ccCC-CCC-------------CccccCCcceE--EE------EEecccccccEEEEEEcc
Q 004255 388 SVYGNNINIFRIMPSC----MRSG-SGN-------------HKYDWNSSHVH--LY------KLHRGITSATIQDICFSH 441 (765)
Q Consensus 388 S~dGt~IrVWdi~~~~----~~~~-sG~-------------~~~~~~~s~~~--l~------~l~rG~~~a~I~slaFSp 441 (765)
|. |..++|||++.-. .+.. .-. ++..++.+..+ +. .+.-+ +...|++++|+|
T Consensus 283 sk-D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~A-Hd~~iwsl~~hP 360 (464)
T KOG0284|consen 283 SK-DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPA-HDGEIWSLAYHP 360 (464)
T ss_pred cC-CceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcc-cccceeeeeccc
Confidence 99 5679999997310 0000 000 00011211111 10 11111 223599999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255 442 YSQWIAIVSSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 442 Dg~~Las~S~dgTVhIwdl~~~gg~ 466 (765)
=|..||+|+.|.|++.|.-+..+..
T Consensus 361 lGhil~tgsnd~t~rfw~r~rp~d~ 385 (464)
T KOG0284|consen 361 LGHILATGSNDRTVRFWTRNRPGDK 385 (464)
T ss_pred cceeEeecCCCcceeeeccCCCCCc
Confidence 9999999999999999987765554
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=5.9e-17 Score=183.31 Aligned_cols=114 Identities=14% Similarity=0.182 Sum_probs=102.1
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (765)
Q Consensus 342 ~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~ 421 (765)
++++++|.+++||++...+...+|.+|+..|.++.|+|..++|||||.| ++|+||.+.+ . .+
T Consensus 478 iAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD-~TvKIW~is~-------f----------SC 539 (775)
T KOG0319|consen 478 IATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGD-KTVKIWSIST-------F----------SC 539 (775)
T ss_pred EEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCC-ceEEEEEecc-------c----------ee
Confidence 3467889999999999999999999999999999999999999999995 5699999965 2 47
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccCC
Q 004255 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ 475 (765)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~~ 475 (765)
+.+|. |++ +.|..++|-.+|+.|++++.||-++||++++..+..++..|+..
T Consensus 540 lkT~e-GH~-~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr 591 (775)
T KOG0319|consen 540 LKTFE-GHT-SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR 591 (775)
T ss_pred eeeec-Ccc-ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccce
Confidence 77775 654 56999999999999999999999999999999999999999854
No 36
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.74 E-value=4.1e-17 Score=171.97 Aligned_cols=215 Identities=15% Similarity=0.203 Sum_probs=159.8
Q ss_pred cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEE
Q 004255 96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV 175 (765)
Q Consensus 96 ~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV 175 (765)
++..++++|-|+|++|++-|- ...++. +. .++++
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~-------------n~wf~t--gs-------------------------------~Drti 175 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPG-------------NEWFAT--GS-------------------------------ADRTI 175 (460)
T ss_pred eehhhhhhccceEEEEeeCCC-------------ceeEEe--cC-------------------------------CCcee
Confidence 455778899999999999872 125543 21 25899
Q ss_pred EEEECCCCeEEEEEeCC-CCEEEEEecCC--eEE-EEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeE
Q 004255 176 RFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMA 251 (765)
Q Consensus 176 ~lWdlktg~~v~tL~~~-s~V~sV~~s~~--~La-V~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~A 251 (765)
+|||+.+|++..+|..+ ..|..|+++++ +|. ++.+.+|+|||+...+.++...+|-. ++..++
T Consensus 176 kIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS-------------~V~~L~ 242 (460)
T KOG0285|consen 176 KIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS-------------GVYCLD 242 (460)
T ss_pred EEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccc-------------eeEEEe
Confidence 99999999999999854 78999999973 555 45567899999988776554444432 111222
Q ss_pred EccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccC
Q 004255 252 VGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSP 331 (765)
Q Consensus 252 lspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~ 331 (765)
+.| ..+
T Consensus 243 lhP------Tld-------------------------------------------------------------------- 248 (460)
T KOG0285|consen 243 LHP------TLD-------------------------------------------------------------------- 248 (460)
T ss_pred ccc------cce--------------------------------------------------------------------
Confidence 211 000
Q ss_pred CCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCC
Q 004255 332 NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411 (765)
Q Consensus 332 s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~ 411 (765)
.+++++.|.+++|||+++...+..|.+|+.+|..+.|.|-.-.++|||.|+ +||+||+.. |
T Consensus 249 ---------vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~-tvrlWDl~a-------g-- 309 (460)
T KOG0285|consen 249 ---------VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS-TVRLWDLRA-------G-- 309 (460)
T ss_pred ---------eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc-eEEEeeecc-------C--
Confidence 012456788999999999999999999999999999999888899999966 599999965 3
Q ss_pred ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 412 ~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
+-...+. ++...|.+++.+|+-..+|++|.|. |+-|++....-..++..|+
T Consensus 310 --------kt~~tlt--~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~ 360 (460)
T KOG0285|consen 310 --------KTMITLT--HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHN 360 (460)
T ss_pred --------ceeEeee--cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccccc
Confidence 2334443 2344699999999999999999886 7999997755556667775
No 37
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.74 E-value=2.3e-16 Score=181.88 Aligned_cols=242 Identities=19% Similarity=0.189 Sum_probs=184.5
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (765)
Q Consensus 51 ~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~s 129 (765)
..++|++.|--..|.. . ...|++|..+ .++|||+ ..|.|..++.+|.+.|+++.+.+
T Consensus 244 ~l~GH~g~V~~l~~~~--~-----~~~lvsgS~D~t~rvWd~-~sg~C~~~l~gh~stv~~~~~~~-------------- 301 (537)
T KOG0274|consen 244 RLVGHFGGVWGLAFPS--G-----GDKLVSGSTDKTERVWDC-STGECTHSLQGHTSSVRCLTIDP-------------- 301 (537)
T ss_pred eccCCCCCceeEEEec--C-----CCEEEEEecCCcEEeEec-CCCcEEEEecCCCceEEEEEccC--------------
Confidence 4677777776666654 1 3478888865 5999997 57999999999999999998774
Q ss_pred CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCCEEEEEecCCeEEEE
Q 004255 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRIVAVG 208 (765)
Q Consensus 130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~-~~s~V~sV~~s~~~LaV~ 208 (765)
.+. ++| + -|++|++|++.++.+++++. +..+|.+|.++..+|++|
T Consensus 302 --~~~-~sg---------------------s----------~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsg 347 (537)
T KOG0274|consen 302 --FLL-VSG---------------------S----------RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSG 347 (537)
T ss_pred --ceE-eec---------------------c----------CCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEE
Confidence 232 232 1 25799999999999999999 668999999999877765
Q ss_pred e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcC
Q 004255 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (765)
Q Consensus 209 ~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~s 287 (765)
. ++.|.+||+.++++++++.+|... +.++.+ .+...
T Consensus 348 s~d~~v~VW~~~~~~cl~sl~gH~~~-------------V~sl~~-------~~~~~----------------------- 384 (537)
T KOG0274|consen 348 SYDGTVKVWDPRTGKCLKSLSGHTGR-------------VYSLIV-------DSENR----------------------- 384 (537)
T ss_pred ecCceEEEEEhhhceeeeeecCCcce-------------EEEEEe-------cCcce-----------------------
Confidence 5 567999999999999999987762 122222 11000
Q ss_pred CCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC-cEEEEec
Q 004255 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFK 366 (765)
Q Consensus 288 p~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~-~~i~~~~ 366 (765)
..++..|++|++||+.++ +++.++.
T Consensus 385 ------------------------------------------------------~~Sgs~D~~IkvWdl~~~~~c~~tl~ 410 (537)
T KOG0274|consen 385 ------------------------------------------------------LLSGSLDTTIKVWDLRTKRKCIHTLQ 410 (537)
T ss_pred ------------------------------------------------------EEeeeeccceEeecCCchhhhhhhhc
Confidence 012346789999999999 9999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 004255 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (765)
Q Consensus 367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L 446 (765)
+|.+-+..+.+ .+++|++++.|++ |++||+.. + .++..+... +...|..+++. ...+
T Consensus 411 ~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~-------~----------~~~~~~~~~-~~~~v~~l~~~--~~~i 467 (537)
T KOG0274|consen 411 GHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEE-------G----------ECLRTLEGR-HVGGVSALALG--KEEI 467 (537)
T ss_pred CCccccccccc--ccceeEecccccc-EEEeeccc-------C----------ceeeeeccC-CcccEEEeecC--cceE
Confidence 99998866655 6789999999775 99999866 3 466666532 33568888887 4678
Q ss_pred EEEeCCCcEEEEeCCCCCCCcc
Q 004255 447 AIVSSKGTCHVFVLSPFGGDSG 468 (765)
Q Consensus 447 as~S~dgTVhIwdl~~~gg~~~ 468 (765)
++++.|+++++||+........
T Consensus 468 l~s~~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred EEEecCCeeEEEecccCchhhh
Confidence 8999999999999987655443
No 38
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.74 E-value=2.9e-17 Score=166.43 Aligned_cols=198 Identities=21% Similarity=0.303 Sum_probs=152.3
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
-.+|--|.-+.|++ | .+.|++|...- +||||++......+-+++|.|.|+.+.++- .++
T Consensus 97 f~hkhivk~~af~~----d---s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-----------eD~-- 156 (334)
T KOG0278|consen 97 FEHKHIVKAVAFSQ----D---SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-----------EDK-- 156 (334)
T ss_pred hhhhheeeeEEecc----c---chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-----------cCc--
Confidence 34677788889988 3 34566666654 899999877766777899999999999882 122
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL 209 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~ 209 (765)
.++. +. .+++||+||.++|..+++|.|+++|.++.+++ ++|.++.
T Consensus 157 ~iLS-Sa--------------------------------dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~ 203 (334)
T KOG0278|consen 157 CILS-SA--------------------------------DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY 203 (334)
T ss_pred eEEe-ec--------------------------------cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec
Confidence 4433 12 14799999999999999999999999888876 8999999
Q ss_pred CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCC
Q 004255 210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (765)
Q Consensus 210 ~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~ 289 (765)
...|.+||+.+++++.... .|. | +.+.+|.| .
T Consensus 204 gssV~Fwdaksf~~lKs~k---~P~---------n--V~SASL~P----------------------------------~ 235 (334)
T KOG0278|consen 204 GSSVKFWDAKSFGLLKSYK---MPC---------N--VESASLHP----------------------------------K 235 (334)
T ss_pred CceeEEeccccccceeecc---Ccc---------c--cccccccC----------------------------------C
Confidence 8999999999998766543 321 1 11122211 1
Q ss_pred CCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe-ccC
Q 004255 290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-KAH 368 (765)
Q Consensus 290 ~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~-~aH 368 (765)
.+.+ +.++.|+.+..||..++..+..+ ++|
T Consensus 236 k~~f-------------------------------------------------VaGged~~~~kfDy~TgeEi~~~nkgh 266 (334)
T KOG0278|consen 236 KEFF-------------------------------------------------VAGGEDFKVYKFDYNTGEEIGSYNKGH 266 (334)
T ss_pred CceE-------------------------------------------------EecCcceEEEEEeccCCceeeecccCC
Confidence 1111 23567899999999999999886 899
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (765)
Q Consensus 369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~ 401 (765)
-+||.|+.|+|||.+.|++|+||+ ||||.+.+
T Consensus 267 ~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~ 298 (334)
T KOG0278|consen 267 FGPVHCVRFSPDGELYASGSEDGT-IRLWQTTP 298 (334)
T ss_pred CCceEEEEECCCCceeeccCCCce-EEEEEecC
Confidence 999999999999999999999886 99999866
No 39
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.74 E-value=5.4e-16 Score=160.33 Aligned_cols=224 Identities=14% Similarity=0.140 Sum_probs=171.6
Q ss_pred CCCeEEEEEecCc-EEEEEccCC---C--cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCC
Q 004255 73 VFKQVLLLGYQNG-FQVLDVEDA---S--NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAP 146 (765)
Q Consensus 73 ~~~~vL~~G~~~G-~qVWdv~~~---g--~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~ 146 (765)
+.++.++.|.-+. --||++... + .+.+.|.+|.|-+.+.+++++ . .|+. + +|
T Consensus 107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-------------~-~ilT--~-----SG- 164 (343)
T KOG0286|consen 107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-------------N-HILT--G-----SG- 164 (343)
T ss_pred CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-------------C-ceEe--c-----CC-
Confidence 3578888888665 689999633 1 355668899999999999964 1 2333 2 11
Q ss_pred CCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---CeEEE-EeCCeEEEEECCCC
Q 004255 147 GQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAV-GLATQIYCFDALTL 221 (765)
Q Consensus 147 ~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~~LaV-~~~~~I~iwD~~t~ 221 (765)
+.|..+||+++|+.+..+..| +-|.++.+.| +.++. +.+...++||++.+
T Consensus 165 -------------------------D~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 165 -------------------------DMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG 219 (343)
T ss_pred -------------------------CceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc
Confidence 368999999999999999876 5899999877 66665 45678999999999
Q ss_pred ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhh
Q 004255 222 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH 301 (765)
Q Consensus 222 ~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~ 301 (765)
.+.+++.+|.. ++ +.+.|-| +|.
T Consensus 220 ~c~qtF~ghes---------DI----Nsv~ffP----------------------------------~G~---------- 242 (343)
T KOG0286|consen 220 QCVQTFEGHES---------DI----NSVRFFP----------------------------------SGD---------- 242 (343)
T ss_pred ceeEeeccccc---------cc----ceEEEcc----------------------------------CCC----------
Confidence 99999988765 22 3333311 111
Q ss_pred hhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC--CCCeEEEEECC
Q 004255 302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH--TSPISALCFDP 379 (765)
Q Consensus 302 ~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH--~~~IsaLaFSp 379 (765)
..++++.|+++++||++..+.+..+... ..+|++++||-
T Consensus 243 ---------------------------------------afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 243 ---------------------------------------AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred ---------------------------------------eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence 1235678999999999999998888632 45899999999
Q ss_pred CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255 380 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (765)
Q Consensus 380 dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwd 459 (765)
+|++|..+-.|. ++.|||... + .++-.|. |+. ..|.+|..+|||.-|++||-|.+++||.
T Consensus 284 SGRlLfagy~d~-~c~vWDtlk-------~----------e~vg~L~-GHe-NRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 284 SGRLLFAGYDDF-TCNVWDTLK-------G----------ERVGVLA-GHE-NRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccEEEeeecCC-ceeEeeccc-------c----------ceEEEee-ccC-CeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999987754 599999865 3 4555664 543 5799999999999999999999999994
No 40
>PTZ00421 coronin; Provisional
Probab=99.73 E-value=2.3e-15 Score=172.86 Aligned_cols=222 Identities=14% Similarity=0.113 Sum_probs=152.6
Q ss_pred CcEEEEEccCCCcceE---eeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCC
Q 004255 84 NGFQVLDVEDASNFNE---LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGM 160 (765)
Q Consensus 84 ~G~qVWdv~~~g~~~e---lls~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~ 160 (765)
+|+.|+.++..|.... ++.+|.++|..+++.| |... +||+.+
T Consensus 51 gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP----------~d~~--~LaSgS----------------------- 95 (493)
T PTZ00421 51 GSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNP----------FDPQ--KLFTAS----------------------- 95 (493)
T ss_pred CceEEeeccccccCCCCCceEeCCCCCEEEEEEcC----------CCCC--EEEEEe-----------------------
Confidence 3455555555554443 6788999999999997 2122 665422
Q ss_pred cCCCCCCCCCCCCEEEEEECCCC-------eEEEEEeCC-CCEEEEEecC---CeEEEEe-CCeEEEEECCCCceeEEEE
Q 004255 161 MDSQSGNCVNSPTAVRFYSFQSH-------CYEHVLRFR-SSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVL 228 (765)
Q Consensus 161 ~~~~~~~~~~~p~tV~lWdlktg-------~~v~tL~~~-s~V~sV~~s~---~~LaV~~-~~~I~iwD~~t~~~l~tl~ 228 (765)
.+++|++||+.++ +.+..|..+ ..|..|+|+| ++|+++. ++.|+|||+.+++.+.++.
T Consensus 96 ----------~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~ 165 (493)
T PTZ00421 96 ----------EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK 165 (493)
T ss_pred ----------CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc
Confidence 1369999999765 346677655 5899999987 4677654 6689999999998877776
Q ss_pred ecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcc
Q 004255 229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (765)
Q Consensus 229 t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G 308 (765)
.|..+ ...++++| +. .
T Consensus 166 ~h~~~-------------V~sla~sp-------dG----------------------------~---------------- 181 (493)
T PTZ00421 166 CHSDQ-------------ITSLEWNL-------DG----------------------------S---------------- 181 (493)
T ss_pred CCCCc-------------eEEEEEEC-------CC----------------------------C----------------
Confidence 66542 12333322 10 0
Q ss_pred cceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCe-EEEEECCCCCEEEEE
Q 004255 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPI-SALCFDPSGTLLVTA 387 (765)
Q Consensus 309 ~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~I-saLaFSpdG~lLATa 387 (765)
.+++++.||+|+|||+.+++.+..+.+|.+.+ ..+.|.+++.+|+|+
T Consensus 182 --------------------------------lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 182 --------------------------------LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred --------------------------------EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 01234578999999999999999999998764 567899998888876
Q ss_pred Ec---CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCC
Q 004255 388 SV---YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF 463 (765)
Q Consensus 388 S~---dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~ 463 (765)
+. .++.|+|||++.. . ..+.... ......+....|++|+++|++++ .|++|++||+...
T Consensus 230 G~s~s~Dr~VklWDlr~~------~----------~p~~~~~-~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKM------A----------SPYSTVD-LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred ecCCCCCCeEEEEeCCCC------C----------CceeEec-cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 53 2456999998541 1 1222221 11223466778999999999888 4999999999753
No 41
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.73 E-value=3.7e-16 Score=180.17 Aligned_cols=228 Identities=14% Similarity=0.138 Sum_probs=170.9
Q ss_pred EEEEEecC-cEEEEEccCCCcceEe-eeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCC
Q 004255 77 VLLLGYQN-GFQVLDVEDASNFNEL-VSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (765)
Q Consensus 77 vL~~G~~~-G~qVWdv~~~g~~~el-ls~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~ 154 (765)
.+..|..+ .+++||+. .+.+... +.+|.|.|..++|. .-.++|.. |.
T Consensus 220 ~~~~~s~~~tl~~~~~~-~~~~i~~~l~GH~g~V~~l~~~-------------~~~~~lvs--gS--------------- 268 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLN-NGYLILTRLVGHFGGVWGLAFP-------------SGGDKLVS--GS--------------- 268 (537)
T ss_pred eEEecCCCceeEEeecc-cceEEEeeccCCCCCceeEEEe-------------cCCCEEEE--Ee---------------
Confidence 45566555 48899995 4656666 89999999999986 11235543 31
Q ss_pred CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEE-EeCCeEEEEECCCCceeEEEEecCC
Q 004255 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAV-GLATQIYCFDALTLENKFSVLTYPV 232 (765)
Q Consensus 155 ~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV-~~~~~I~iwD~~t~~~l~tl~t~p~ 232 (765)
.+.++++||..+|+++++|..+ +.|..+...+..++. +.|.+|++||+.++.+++++.+|..
T Consensus 269 ----------------~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~ 332 (537)
T KOG0274|consen 269 ----------------TDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG 332 (537)
T ss_pred ----------------cCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccc
Confidence 2479999999999999999966 577888887776666 4677899999999999999887655
Q ss_pred cccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccccee
Q 004255 233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 312 (765)
Q Consensus 233 p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~kt 312 (765)
+ +..+.+ .. +
T Consensus 333 ~-------------V~~v~~-------~~-~------------------------------------------------- 342 (537)
T KOG0274|consen 333 P-------------VNCVQL-------DE-P------------------------------------------------- 342 (537)
T ss_pred c-------------EEEEEe-------cC-C-------------------------------------------------
Confidence 3 111221 11 0
Q ss_pred ecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 004255 313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN 392 (765)
Q Consensus 313 ls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt 392 (765)
.+.++..||+|+|||+.++++++.+.+|+..|.++.|+.. ..+.+||.| +
T Consensus 343 ----------------------------~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D-~ 392 (537)
T KOG0274|consen 343 ----------------------------LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD-T 392 (537)
T ss_pred ----------------------------EEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeec-c
Confidence 0123567899999999999999999999999999999876 899999996 5
Q ss_pred EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccc
Q 004255 393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471 (765)
Q Consensus 393 ~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~ 471 (765)
.|++||+... . .+++.|. | +.+.+.++. ..+++|.+++.|++|++||++..+....+.+
T Consensus 393 ~IkvWdl~~~-------~---------~c~~tl~-~-h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 393 TIKVWDLRTK-------R---------KCIHTLQ-G-HTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred ceEeecCCch-------h---------hhhhhhc-C-Ccccccccc--cccceeEeccccccEEEeecccCceeeeecc
Confidence 6999999641 0 2455553 3 334455544 4578999999999999999999887766555
No 42
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.73 E-value=8.5e-17 Score=172.31 Aligned_cols=224 Identities=16% Similarity=0.222 Sum_probs=165.8
Q ss_pred CCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 74 ~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
.+.+|+.++++..++|+++ ...++.+|++|.+.|.++++.-. ++ .+|++.
T Consensus 231 ~~~~iAas~d~~~r~Wnvd-~~r~~~TLsGHtdkVt~ak~~~~-----------~~----~vVsgs-------------- 280 (459)
T KOG0288|consen 231 NKHVIAASNDKNLRLWNVD-SLRLRHTLSGHTDKVTAAKFKLS-----------HS----RVVSGS-------------- 280 (459)
T ss_pred CceEEeecCCCceeeeecc-chhhhhhhcccccceeeehhhcc-----------cc----ceeecc--------------
Confidence 4678888888889999996 57788999999999999997631 22 234431
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEecCC
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPV 232 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~ 232 (765)
.+++|++||+....|.+++-+-+.+.+|.++...++.+- +++|++||+++..+..++..+..
T Consensus 281 -----------------~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~ 343 (459)
T KOG0288|consen 281 -----------------ADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGR 343 (459)
T ss_pred -----------------ccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcc
Confidence 258999999999999999999999999999977777764 56799999998877666543211
Q ss_pred cccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccccee
Q 004255 233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 312 (765)
Q Consensus 233 p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~kt 312 (765)
..++.++. ++-
T Consensus 344 --------------vtSl~ls~----------------------------------~g~--------------------- 354 (459)
T KOG0288|consen 344 --------------VTSLDLSM----------------------------------DGL--------------------- 354 (459)
T ss_pred --------------eeeEeecc----------------------------------CCe---------------------
Confidence 12233321 000
Q ss_pred ecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC----CCCeEEEEECCCCCEEEEEE
Q 004255 313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH----TSPISALCFDPSGTLLVTAS 388 (765)
Q Consensus 313 ls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH----~~~IsaLaFSpdG~lLATaS 388 (765)
.+.+...|.++.+.|+.+.++...|.+- .+..+.+.|||+|.|+|+||
T Consensus 355 ----------------------------~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS 406 (459)
T KOG0288|consen 355 ----------------------------ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS 406 (459)
T ss_pred ----------------------------EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc
Confidence 0001134567888888888877777642 23478999999999999999
Q ss_pred cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255 389 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (765)
Q Consensus 389 ~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwd 459 (765)
.||. |.||++.+ | .....+.....++.|.+++|+|-|.+|++++.++++.+|.
T Consensus 407 ~dgs-v~iW~v~t-------g----------KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 407 ADGS-VYIWSVFT-------G----------KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCc-EEEEEccC-------c----------eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9886 99999965 3 3444554332333699999999999999999999999993
No 43
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=9.3e-16 Score=167.35 Aligned_cols=235 Identities=20% Similarity=0.257 Sum_probs=167.0
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
...-++.+.-+.|-+ ++++|+.|...| +||||. .+......+..|+.||..++|.|. ++
T Consensus 64 ~srFk~~v~s~~fR~-------DG~LlaaGD~sG~V~vfD~-k~r~iLR~~~ah~apv~~~~f~~~-----------d~- 123 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRS-------DGRLLAAGDESGHVKVFDM-KSRVILRQLYAHQAPVHVTKFSPQ-----------DN- 123 (487)
T ss_pred HHhhccceeEEEeec-------CCeEEEccCCcCcEEEecc-ccHHHHHHHhhccCceeEEEeccc-----------CC-
Confidence 344566677777755 478999999988 899995 445567788899999999999873 22
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---CeEE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVA 206 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~~La 206 (765)
.++ ++|++ +.++++||+.+......+..+ +.|.+.++++ .+++
T Consensus 124 -t~l-~s~sD-------------------------------d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivv 170 (487)
T KOG0310|consen 124 -TML-VSGSD-------------------------------DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVV 170 (487)
T ss_pred -eEE-EecCC-------------------------------CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEE
Confidence 334 34433 379999999988865566654 6899999987 3677
Q ss_pred EE-eCCeEEEEECCCC-ceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCceecCCccccCCCCCCCCCC
Q 004255 207 VG-LATQIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTLLLSNSGRLSPQNLTPSGVS 283 (765)
Q Consensus 207 V~-~~~~I~iwD~~t~-~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp-r~LAyas~~~~~~~~G~~s~~~lt~~~~s 283 (765)
+| .|+.|++||+++. ....++. |..|. -..+++.+ ..+|+++
T Consensus 171 tGsYDg~vrl~DtR~~~~~v~eln-hg~pV------------e~vl~lpsgs~iasAg---------------------- 215 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTSRVVELN-HGCPV------------ESVLALPSGSLIASAG---------------------- 215 (487)
T ss_pred ecCCCceEEEEEeccCCceeEEec-CCCce------------eeEEEcCCCCEEEEcC----------------------
Confidence 65 5678999999876 3333333 22220 01223321 1111111
Q ss_pred CCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC-cEE
Q 004255 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AII 362 (765)
Q Consensus 284 ~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~-~~i 362 (765)
...|+|||+.+| +.+
T Consensus 216 ----------------------------------------------------------------Gn~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 216 ----------------------------------------------------------------GNSVKVWDLTTGGQLL 231 (487)
T ss_pred ----------------------------------------------------------------CCeEEEEEecCCceeh
Confidence 126999999965 455
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (765)
Q Consensus 363 ~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD 442 (765)
..+..|...|+||+|..+++.|.++|-|++ ++|||+... ..++.+. -.++|.+|+.|||
T Consensus 232 ~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~-----------------Kvv~s~~---~~~pvLsiavs~d 290 (487)
T KOG0310|consen 232 TSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNY-----------------KVVHSWK---YPGPVLSIAVSPD 290 (487)
T ss_pred hhhhcccceEEEEEeecCCceEeecccccc-eEEEEccce-----------------EEEEeee---cccceeeEEecCC
Confidence 555569999999999999999999999886 999997431 2344432 2467999999999
Q ss_pred CCEEEEEeCCCcEEEEe
Q 004255 443 SQWIAIVSSKGTCHVFV 459 (765)
Q Consensus 443 g~~Las~S~dgTVhIwd 459 (765)
++.+++|-.+|.+-+=+
T Consensus 291 d~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 291 DQTVVIGMSNGLVSIRR 307 (487)
T ss_pred CceEEEecccceeeeeh
Confidence 99999999999987653
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.9e-16 Score=176.19 Aligned_cols=223 Identities=13% Similarity=0.126 Sum_probs=163.4
Q ss_pred CEEEEEECCCCeEEEEEeCCC-CEEEEEecC--CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 004255 173 TAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s-~V~sV~~s~--~~LaV~~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (765)
+.|.|||..|..+|++++... +|.+.+|=. +.+++|.|+ +|++|+..|++..+++..|+.= ..
T Consensus 35 G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~Dy-------------IR 101 (794)
T KOG0276|consen 35 GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDY-------------IR 101 (794)
T ss_pred CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccc-------------ee
Confidence 589999999999999998754 888888754 688887765 7999999999999999988861 24
Q ss_pred eeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCC
Q 004255 249 PMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (765)
Q Consensus 249 ~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~ 326 (765)
.+++.| -++-+++++..+ ..|+.-.... +.+++.+|..-+.
T Consensus 102 ~iavHPt~P~vLtsSDDm~i-----KlW~we~~wa---------------------------~~qtfeGH~HyVM----- 144 (794)
T KOG0276|consen 102 SIAVHPTLPYVLTSSDDMTI-----KLWDWENEWA---------------------------CEQTFEGHEHYVM----- 144 (794)
T ss_pred eeeecCCCCeEEecCCccEE-----EEeeccCcee---------------------------eeeEEcCcceEEE-----
Confidence 577777 466666665322 1111111000 0033333322111
Q ss_pred CCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC--CEEEEEEcCCCEEEEEeCCCCcc
Q 004255 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG--TLLVTASVYGNNINIFRIMPSCM 404 (765)
Q Consensus 327 ~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG--~lLATaS~dGt~IrVWdi~~~~~ 404 (765)
...+|| .+..+.++++-|++|+||.+.+..+..+|++|...|+|+.|=+-| -+|+||++ |.+|+|||.++-
T Consensus 145 -qv~fnP---kD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD-D~tiKvWDyQtk-- 217 (794)
T KOG0276|consen 145 -QVAFNP---KDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD-DLTIKVWDYQTK-- 217 (794)
T ss_pred -EEEecC---CCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC-CceEEEeecchH--
Confidence 111222 122345678899999999999999999999999999999998865 48999988 678999998652
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccc
Q 004255 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 469 (765)
Q Consensus 405 ~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~ 469 (765)
.++.+|. |++ ..|..+.|+|.=-++++||.|||++||.-.+|..+.++
T Consensus 218 ---------------~CV~TLe-GHt-~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 218 ---------------SCVQTLE-GHT-NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred ---------------HHHHHhh-ccc-ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence 4666665 554 35999999999999999999999999999988776543
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=8.9e-16 Score=170.89 Aligned_cols=222 Identities=15% Similarity=0.239 Sum_probs=171.8
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (765)
Q Consensus 74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~ 152 (765)
.++-+++|.+++ |+||+.+ +.+-...+..|..-++++++-|. .|.++. +.|
T Consensus 66 RknWiv~GsDD~~IrVfnyn-t~ekV~~FeAH~DyIR~iavHPt-------------~P~vLt-sSD------------- 117 (794)
T KOG0276|consen 66 RKNWIVTGSDDMQIRVFNYN-TGEKVKTFEAHSDYIRSIAVHPT-------------LPYVLT-SSD------------- 117 (794)
T ss_pred ccceEEEecCCceEEEEecc-cceeeEEeeccccceeeeeecCC-------------CCeEEe-cCC-------------
Confidence 367899999997 9999995 56666789999999999999984 467654 222
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCC-eEEEEEeCCC-CEEEEEecC---CeEEE-EeCCeEEEEECCCCceeEE
Q 004255 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-CYEHVLRFRS-SVCMVRCSP---RIVAV-GLATQIYCFDALTLENKFS 226 (765)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg-~~v~tL~~~s-~V~sV~~s~---~~LaV-~~~~~I~iwD~~t~~~l~t 226 (765)
+-+|++||-..+ .+..+++.|+ -|..|+||| +.+|. ++|.+|++|.+....+.+|
T Consensus 118 -------------------Dm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT 178 (794)
T KOG0276|consen 118 -------------------DMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT 178 (794)
T ss_pred -------------------ccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee
Confidence 358999999765 5777888765 899999999 45554 6788999999999999999
Q ss_pred EEecCCcccCCCCccccccccceeEEccceEEEec-CCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhh
Q 004255 227 VLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYAS-NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (765)
Q Consensus 227 l~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas-~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~l 305 (765)
|.+|.. + ++.+.+ |++ +.|.
T Consensus 179 l~gHek---------G----VN~Vdy------y~~gdkpy---------------------------------------- 199 (794)
T KOG0276|consen 179 LEGHEK---------G----VNCVDY------YTGGDKPY---------------------------------------- 199 (794)
T ss_pred eecccc---------C----cceEEe------ccCCCcce----------------------------------------
Confidence 998875 2 223332 222 1111
Q ss_pred hcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 004255 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV 385 (765)
Q Consensus 306 a~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLA 385 (765)
+.++..|-+|+|||.++..|+++|.+|+..|++++|+|.=.+++
T Consensus 200 ------------------------------------lIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii 243 (794)
T KOG0276|consen 200 ------------------------------------LISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII 243 (794)
T ss_pred ------------------------------------EEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence 12456788999999999999999999999999999999999999
Q ss_pred EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEE
Q 004255 386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (765)
Q Consensus 386 TaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhI 457 (765)
|||+||+ +|||...+. +....|.-|. ..|+||+-.++++.+++|.+.|.|.|
T Consensus 244 sgsEDGT-vriWhs~Ty-----------------~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 244 SGSEDGT-VRIWNSKTY-----------------KLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EecCCcc-EEEecCcce-----------------ehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999886 999997553 1112222232 35999999999999999999987754
No 46
>PTZ00420 coronin; Provisional
Probab=99.70 E-value=1.2e-14 Score=168.38 Aligned_cols=218 Identities=11% Similarity=0.140 Sum_probs=147.8
Q ss_pred EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCC
Q 004255 86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS 165 (765)
Q Consensus 86 ~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~ 165 (765)
++||+... ......+..|.++|..+++.|. .. .+||+.+
T Consensus 56 I~L~~~~r-~~~v~~L~gH~~~V~~lafsP~----------~~--~lLASgS---------------------------- 94 (568)
T PTZ00420 56 IRLENQMR-KPPVIKLKGHTSSILDLQFNPC----------FS--EILASGS---------------------------- 94 (568)
T ss_pred EEeeecCC-CceEEEEcCCCCCEEEEEEcCC----------CC--CEEEEEe----------------------------
Confidence 78998854 3455678889999999999973 12 2665422
Q ss_pred CCCCCCCCEEEEEECCCCe--------EEEEEeC-CCCEEEEEecC---CeEEE-EeCCeEEEEECCCCceeEEEEecCC
Q 004255 166 GNCVNSPTAVRFYSFQSHC--------YEHVLRF-RSSVCMVRCSP---RIVAV-GLATQIYCFDALTLENKFSVLTYPV 232 (765)
Q Consensus 166 ~~~~~~p~tV~lWdlktg~--------~v~tL~~-~s~V~sV~~s~---~~LaV-~~~~~I~iwD~~t~~~l~tl~t~p~ 232 (765)
.+++|+|||+.++. .+..+.. ...|.+|+++| .+|++ +.++.|+|||+.+++....+. ++.
T Consensus 95 -----~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~ 168 (568)
T PTZ00420 95 -----EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPK 168 (568)
T ss_pred -----CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCC
Confidence 13699999998642 3345554 46899999998 34555 457789999999998766654 221
Q ss_pred cccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccccee
Q 004255 233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 312 (765)
Q Consensus 233 p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~kt 312 (765)
. ...+++++ + |.+
T Consensus 169 ~-------------V~Slswsp-------d----------------------------G~l------------------- 181 (568)
T PTZ00420 169 K-------------LSSLKWNI-------K----------------------------GNL------------------- 181 (568)
T ss_pred c-------------EEEEEECC-------C----------------------------CCE-------------------
Confidence 0 12233322 1 000
Q ss_pred ecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEE-----EEECCCCCEEEEE
Q 004255 313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISA-----LCFDPSGTLLVTA 387 (765)
Q Consensus 313 ls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~Isa-----LaFSpdG~lLATa 387 (765)
++.+..|+.|+|||+.+++.+.++.+|.+.+.+ ..|++++.+|+|+
T Consensus 182 -----------------------------Lat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTt 232 (568)
T PTZ00420 182 -----------------------------LSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILST 232 (568)
T ss_pred -----------------------------EEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEE
Confidence 112346889999999999999999999886543 3467899999998
Q ss_pred EcCC---CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 388 SVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 388 S~dG---t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
+.++ +.|+|||++.. + ..+..+.-......+....+.++|.++++|+.|++|++|++..
T Consensus 233 G~d~~~~R~VkLWDlr~~------~----------~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 233 GFSKNNMREMKLWDLKNT------T----------SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EcCCCCccEEEEEECCCC------C----------CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 8765 36999999641 1 2333322111223344455577799999999999999999965
No 47
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.70 E-value=1.5e-16 Score=168.05 Aligned_cols=278 Identities=15% Similarity=0.160 Sum_probs=188.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
..+|+|.|....-+. . .-..+++|..+| ++|||+. .-++..++..|.|.|+.|.+.. ..
T Consensus 62 L~gHrdGV~~lakhp-----~-~ls~~aSGs~DG~VkiWnls-qR~~~~~f~AH~G~V~Gi~v~~------------~~- 121 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHP-----N-KLSTVASGSCDGEVKIWNLS-QRECIRTFKAHEGLVRGICVTQ------------TS- 121 (433)
T ss_pred ccccccccchhhcCc-----c-hhhhhhccccCceEEEEehh-hhhhhheeecccCceeeEEecc------------cc-
Confidence 567999988655433 1 113567777666 9999995 5678899999999999998762 11
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG 208 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~ 208 (765)
.+ . +|+ +++|+.|-+.- ..++++-..+.++.|..+. ...|++
T Consensus 122 -~~-t-vgd--------------------------------DKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTc 165 (433)
T KOG0268|consen 122 -FF-T-VGD--------------------------------DKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATC 165 (433)
T ss_pred -eE-E-ecC--------------------------------CcceeeeeccC-Ccceeeecccccccccccccccccccc
Confidence 22 2 232 37999998854 6889999999999998876 344444
Q ss_pred eCCeEEEEECCCCceeEEEEe-cCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCCccccCCCCCCCCCCC
Q 004255 209 LATQIYCFDALTLENKFSVLT-YPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (765)
Q Consensus 209 ~~~~I~iwD~~t~~~l~tl~t-~p~p~~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s~~~lt~~~~s~ 284 (765)
.++|.|||..-...+.++.. .+. ..++.++| ..||++.++. +.+..|..+..
T Consensus 166 -Ge~i~IWD~~R~~Pv~smswG~Dt--------------i~svkfNpvETsILas~~sDr-----sIvLyD~R~~~---- 221 (433)
T KOG0268|consen 166 -GEQIDIWDEQRDNPVSSMSWGADS--------------ISSVKFNPVETSILASCASDR-----SIVLYDLRQAS---- 221 (433)
T ss_pred -CceeeecccccCCccceeecCCCc--------------eeEEecCCCcchheeeeccCC-----ceEEEecccCC----
Confidence 46899999876555555543 221 12355555 6788875542 11112221110
Q ss_pred CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC-cEEE
Q 004255 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIIS 363 (765)
Q Consensus 285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~-~~i~ 363 (765)
. |.+....+. .+.++.|| .+.....+..|..+..||+... +++.
T Consensus 222 -------------------P--------l~KVi~~mR----TN~IswnP----eafnF~~a~ED~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 222 -------------------P--------LKKVILTMR----TNTICWNP----EAFNFVAANEDHNLYTYDMRNLSRPLN 266 (433)
T ss_pred -------------------c--------cceeeeecc----ccceecCc----cccceeeccccccceehhhhhhcccch
Confidence 0 000000011 12233333 3334557889999999999875 4677
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 004255 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (765)
Q Consensus 364 ~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg 443 (765)
..++|.+.|..+.|||.|+-++|||- |++||||.+.. | .-+.+|.-+|- ..|.|+.||.|+
T Consensus 267 v~~dhvsAV~dVdfsptG~Efvsgsy-DksIRIf~~~~-------~--------~SRdiYhtkRM---q~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 267 VHKDHVSAVMDVDFSPTGQEFVSGSY-DKSIRIFPVNH-------G--------HSRDIYHTKRM---QHVFCVKYSMDS 327 (433)
T ss_pred hhcccceeEEEeccCCCcchhccccc-cceEEEeecCC-------C--------cchhhhhHhhh---heeeEEEEeccc
Confidence 88999999999999999999999999 56799999854 2 11345544442 359999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCC
Q 004255 444 QWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 444 ~~Las~S~dgTVhIwdl~~~ 463 (765)
+||.+||+|+.|++|.-+..
T Consensus 328 kyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 328 KYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred cEEEecCCCcceeeeecchh
Confidence 99999999999999987653
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.69 E-value=1.5e-14 Score=146.73 Aligned_cols=203 Identities=20% Similarity=0.274 Sum_probs=148.0
Q ss_pred EeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEE
Q 004255 99 ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFY 178 (765)
Q Consensus 99 ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lW 178 (765)
..+..|.++|.++.+.|+ +.+|++... ++.|++|
T Consensus 3 ~~~~~h~~~i~~~~~~~~-------------~~~l~~~~~---------------------------------~g~i~i~ 36 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPD-------------GKLLATGSG---------------------------------DGTIKVW 36 (289)
T ss_pred hHhcccCCCEEEEEEcCC-------------CCEEEEeec---------------------------------CcEEEEE
Confidence 345678899999999874 236654221 2689999
Q ss_pred ECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc
Q 004255 179 SFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP 254 (765)
Q Consensus 179 dlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp 254 (765)
|+.+++....+..+ ..+..+.+++ +.|+++. ++.|++||+.+++.+..+..+..+ ...+.+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-------------i~~~~~~~ 103 (289)
T cd00200 37 DLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY-------------VSSVAFSP 103 (289)
T ss_pred EeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCc-------------EEEEEEcC
Confidence 99999888887755 5777888887 3666655 678999999987666666544321 11122211
Q ss_pred ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCc
Q 004255 255 RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSV 334 (765)
Q Consensus 255 r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~ 334 (765)
+. .+
T Consensus 104 -------~~----------------------------~~----------------------------------------- 107 (289)
T cd00200 104 -------DG----------------------------RI----------------------------------------- 107 (289)
T ss_pred -------CC----------------------------CE-----------------------------------------
Confidence 00 00
Q ss_pred cccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccc
Q 004255 335 WKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 414 (765)
Q Consensus 335 ~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~ 414 (765)
++.+..+|.|.+||+.+++.+..+..|..+|.+++|+|++.+|++++.+| .|++||+.. +
T Consensus 108 -------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~-~i~i~d~~~-------~----- 167 (289)
T cd00200 108 -------LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG-TIKLWDLRT-------G----- 167 (289)
T ss_pred -------EEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCC-cEEEEEccc-------c-----
Confidence 01223478999999999999999999999999999999999999998656 499999854 2
Q ss_pred cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 415 ~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
..+..+. + +...|.+++|+|+++.|++++.|+.+++||+...
T Consensus 168 -----~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 209 (289)
T cd00200 168 -----KCVATLT-G-HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209 (289)
T ss_pred -----ccceeEe-c-CccccceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence 2333443 2 3346999999999999999999999999999763
No 49
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.69 E-value=1.9e-16 Score=166.25 Aligned_cols=239 Identities=15% Similarity=0.167 Sum_probs=174.0
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
-++++-|++..||. ++|+.|+.+ .++|||++ +++...++-+|-..|-.+.+.. .
T Consensus 234 ~GHtGSVLCLqyd~---------rviisGSSDsTvrvWDv~-tge~l~tlihHceaVLhlrf~n-------------g-- 288 (499)
T KOG0281|consen 234 TGHTGSVLCLQYDE---------RVIVSGSSDSTVRVWDVN-TGEPLNTLIHHCEAVLHLRFSN-------------G-- 288 (499)
T ss_pred hcCCCcEEeeeccc---------eEEEecCCCceEEEEecc-CCchhhHHhhhcceeEEEEEeC-------------C--
Confidence 45666677666654 589999876 59999995 6889999989988898888762 2
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEE---EEEeC-CCCEEEEEecCCeEEE
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE---HVLRF-RSSVCMVRCSPRIVAV 207 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v---~tL~~-~s~V~sV~~s~~~LaV 207 (765)
+++. +. .++++.+||+.+-..+ +.|.. ...|-.|.|+.++++.
T Consensus 289 ~mvt--cS-------------------------------kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVs 335 (499)
T KOG0281|consen 289 YMVT--CS-------------------------------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVS 335 (499)
T ss_pred EEEE--ec-------------------------------CCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEE
Confidence 5533 31 2479999999875532 33443 4689999999998887
Q ss_pred EeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255 208 GLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (765)
Q Consensus 208 ~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~ 286 (765)
+.. .+|++|++.|++..++|.+|.. -+|+..+.
T Consensus 336 ASgDRTikvW~~st~efvRtl~gHkR-----------------------GIAClQYr----------------------- 369 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEFVRTLNGHKR-----------------------GIACLQYR----------------------- 369 (499)
T ss_pred ecCCceEEEEeccceeeehhhhcccc-----------------------cceehhcc-----------------------
Confidence 664 5799999999999999887754 12333221
Q ss_pred CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (765)
Q Consensus 287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~ 366 (765)
|.|| ++++.|.+|+|||+..|+++..++
T Consensus 370 ----~rlv------------------------------------------------VSGSSDntIRlwdi~~G~cLRvLe 397 (499)
T KOG0281|consen 370 ----DRLV------------------------------------------------VSGSSDNTIRLWDIECGACLRVLE 397 (499)
T ss_pred ----CeEE------------------------------------------------EecCCCceEEEEeccccHHHHHHh
Confidence 1111 234568899999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 004255 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (765)
Q Consensus 367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L 446 (765)
+|..-|.++.|+ .+.+++|.-||+ |+|||+....... ..++..++..+-+ +.+.|..+.|. ...|
T Consensus 398 GHEeLvRciRFd--~krIVSGaYDGk-ikvWdl~aaldpr--------a~~~~~Cl~~lv~--hsgRVFrLQFD--~fqI 462 (499)
T KOG0281|consen 398 GHEELVRCIRFD--NKRIVSGAYDGK-IKVWDLQAALDPR--------APASTLCLRTLVE--HSGRVFRLQFD--EFQI 462 (499)
T ss_pred chHHhhhheeec--Cceeeeccccce-EEEEecccccCCc--------ccccchHHHhhhh--ccceeEEEeec--ceEE
Confidence 999999999996 478999999776 9999996521100 0011124444433 34568888885 4689
Q ss_pred EEEeCCCcEEEEeCCC
Q 004255 447 AIVSSKGTCHVFVLSP 462 (765)
Q Consensus 447 as~S~dgTVhIwdl~~ 462 (765)
+++|.|.||-|||...
T Consensus 463 vsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 463 ISSSHDDTILIWDFLN 478 (499)
T ss_pred EeccCCCeEEEEEcCC
Confidence 9999999999999865
No 50
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.69 E-value=9.9e-15 Score=149.49 Aligned_cols=255 Identities=14% Similarity=0.154 Sum_probs=170.5
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCE
Q 004255 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (765)
Q Consensus 54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpL 132 (765)
+|--.+.-++||+ .+.+|.++..+. .-||-- .+|+..-++.+|.|.|.++.+.-+ ++ .
T Consensus 8 GHERplTqiKyN~-------eGDLlFscaKD~~~~vw~s-~nGerlGty~GHtGavW~~Did~~-----------s~--~ 66 (327)
T KOG0643|consen 8 GHERPLTQIKYNR-------EGDLLFSCAKDSTPTVWYS-LNGERLGTYDGHTGAVWCCDIDWD-----------SK--H 66 (327)
T ss_pred cCccccceEEecC-------CCcEEEEecCCCCceEEEe-cCCceeeeecCCCceEEEEEecCC-----------cc--e
Confidence 3444567777877 245777777764 899987 468888899999999999998732 22 3
Q ss_pred EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeC
Q 004255 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA 210 (765)
Q Consensus 133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~ 210 (765)
| ++|. .+.+++|||.++|+++.+++++.+|..+.|+. ++++++.+
T Consensus 67 l--iTGS-------------------------------AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD 113 (327)
T KOG0643|consen 67 L--ITGS-------------------------------ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTD 113 (327)
T ss_pred e--eecc-------------------------------ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEeh
Confidence 3 2331 24689999999999999999999999999987 56665555
Q ss_pred C------eEEEEECCCCce-------eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCC
Q 004255 211 T------QIYCFDALTLEN-------KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNL 277 (765)
Q Consensus 211 ~------~I~iwD~~t~~~-------l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~l 277 (765)
+ .|.+||++.... ...|.++. +.+
T Consensus 114 ~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~------------------------------ski------------- 150 (327)
T KOG0643|consen 114 KQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD------------------------------SKI------------- 150 (327)
T ss_pred hhcCcceEEEEEEccCChhhhcccCceEEecCCc------------------------------cce-------------
Confidence 4 288888764321 11111100 000
Q ss_pred CCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC
Q 004255 278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV 357 (765)
Q Consensus 278 t~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~ 357 (765)
+ ...|.+....+..+..+|.|.+||+.
T Consensus 151 --------t---------------------------------------------~a~Wg~l~~~ii~Ghe~G~is~~da~ 177 (327)
T KOG0643|consen 151 --------T---------------------------------------------SALWGPLGETIIAGHEDGSISIYDAR 177 (327)
T ss_pred --------e---------------------------------------------eeeecccCCEEEEecCCCcEEEEEcc
Confidence 0 00011122234567889999999999
Q ss_pred CCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc---------cC-------------CCCCCccc
Q 004255 358 TRA-IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM---------RS-------------GSGNHKYD 414 (765)
Q Consensus 358 s~~-~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~---------~~-------------~sG~~~~~ 414 (765)
++. .+...+-|.+.|+.|.|+||.++++|+|. +++-++||..+... .+ +-|....+
T Consensus 178 ~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~-Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~d 256 (327)
T KOG0643|consen 178 TGKELVDSDEEHSSKINDLQFSRDRTYFITGSK-DTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMD 256 (327)
T ss_pred cCceeeechhhhccccccccccCCcceEEeccc-CccceeeeccceeeEEEeeecccccceecccccceEEecCCceeee
Confidence 974 56667889999999999999999999999 56799999865310 00 00110000
Q ss_pred c----------CCcc------eEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 415 W----------NSSH------VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 415 ~----------~~s~------~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
. .+.. ..+-.+ .| |-++|.+|+|+|||+-.++|+.||+|+|...+
T Consensus 257 VTTT~~r~GKFEArFyh~i~eEEigrv-kG-HFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 257 VTTTSTRAGKFEARFYHLIFEEEIGRV-KG-HFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred eeeecccccchhhhHHHHHHHHHhccc-cc-cccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 0 0000 111111 13 33579999999999999999999999886554
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=4.5e-15 Score=149.62 Aligned_cols=209 Identities=14% Similarity=0.082 Sum_probs=151.8
Q ss_pred eEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 004255 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (765)
Q Consensus 98 ~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~l 177 (765)
..++..++|+|+.+++.-+ ....+ .+| ++++|||
T Consensus 10 ~~~l~~~qgaV~avryN~d-------------GnY~l-tcG--------------------------------sdrtvrL 43 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVD-------------GNYCL-TCG--------------------------------SDRTVRL 43 (307)
T ss_pred ceeecccccceEEEEEccC-------------CCEEE-EcC--------------------------------CCceEEe
Confidence 4578889999999998743 22432 333 2589999
Q ss_pred EECCCCeEEEEEeCCC-CEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEc
Q 004255 178 YSFQSHCYEHVLRFRS-SVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG 253 (765)
Q Consensus 178 Wdlktg~~v~tL~~~s-~V~sV~~s~---~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Als 253 (765)
|+...|.+++++..++ .|++++.+. ++-..|.+..|++||+.|++..+.+.+|-.. .+.+.|
T Consensus 44 WNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aq-------------VNtV~f- 109 (307)
T KOG0316|consen 44 WNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQ-------------VNTVRF- 109 (307)
T ss_pred ecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccce-------------eeEEEe-
Confidence 9999999999999875 899888654 4444556678999999999999999887651 122222
Q ss_pred cceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCC
Q 004255 254 PRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS 333 (765)
Q Consensus 254 pr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~ 333 (765)
-.+..
T Consensus 110 ------NeesS--------------------------------------------------------------------- 114 (307)
T KOG0316|consen 110 ------NEESS--------------------------------------------------------------------- 114 (307)
T ss_pred ------cCcce---------------------------------------------------------------------
Confidence 22110
Q ss_pred ccccccccccccCCCCeEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCC
Q 004255 334 VWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411 (765)
Q Consensus 334 ~~~~~~~~~~~~~~dG~V~IwDl~s~--~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~ 411 (765)
.+++++.|..+++||.++. ++++.|..-...|.++..+ +..++++|.||+ +|.||++. |
T Consensus 115 -------Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt-vRtydiR~-------G-- 175 (307)
T KOG0316|consen 115 -------VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT-VRTYDIRK-------G-- 175 (307)
T ss_pred -------EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc-EEEEEeec-------c--
Confidence 0124566889999999764 6788888888899888775 578999999886 99999965 4
Q ss_pred ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccc
Q 004255 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (765)
Q Consensus 412 ~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h 472 (765)
+..-.. -..+|+|++||+||+.+.+++.|+|+|+-|-.+.+-.....+|
T Consensus 176 --------~l~sDy----~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh 224 (307)
T KOG0316|consen 176 --------TLSSDY----FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH 224 (307)
T ss_pred --------eeehhh----cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence 121111 1247999999999999999999999999887654333333344
No 52
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.68 E-value=5.3e-14 Score=147.72 Aligned_cols=267 Identities=13% Similarity=0.091 Sum_probs=160.9
Q ss_pred eEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCC
Q 004255 76 QVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (765)
Q Consensus 76 ~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~ 154 (765)
.+++++..++ +.+||++ ++++...+..+.+ +..+.+.|+ ...|+++..+
T Consensus 2 ~~~~s~~~d~~v~~~d~~-t~~~~~~~~~~~~-~~~l~~~~d-------------g~~l~~~~~~--------------- 51 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTA-TLEVTRTFPVGQR-PRGITLSKD-------------GKLLYVCASD--------------- 51 (300)
T ss_pred cEEEEecCCCEEEEEECC-CCceEEEEECCCC-CCceEECCC-------------CCEEEEEECC---------------
Confidence 3666766665 9999995 4666667765544 566777764 1244433221
Q ss_pred CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEE--eCCeEEEEECCCCceeEEEEec
Q 004255 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG--LATQIYCFDALTLENKFSVLTY 230 (765)
Q Consensus 155 ~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~--~~~~I~iwD~~t~~~l~tl~t~ 230 (765)
.++|++||+.+++.++.+.....+..+.+++ +.|+++ .++.|++||+.+.+.+..+...
T Consensus 52 -----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~ 114 (300)
T TIGR03866 52 -----------------SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG 114 (300)
T ss_pred -----------------CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC
Confidence 2589999999999988887655566777776 556554 3568999999988766665422
Q ss_pred CCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcc
Q 004255 231 PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (765)
Q Consensus 231 p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G 308 (765)
.. ...++++| ++|+++...... ...++..+ +.++.
T Consensus 115 ~~--------------~~~~~~~~dg~~l~~~~~~~~~----~~~~d~~~------------~~~~~------------- 151 (300)
T TIGR03866 115 VE--------------PEGMAVSPDGKIVVNTSETTNM----AHFIDTKT------------YEIVD------------- 151 (300)
T ss_pred CC--------------cceEEECCCCCEEEEEecCCCe----EEEEeCCC------------CeEEE-------------
Confidence 11 12367776 666665432100 00001000 00000
Q ss_pred cceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCC-----C--CeEEEEECCCC
Q 004255 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT-----S--PISALCFDPSG 381 (765)
Q Consensus 309 ~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~-----~--~IsaLaFSpdG 381 (765)
.+ ..........++++++.. .+.+..+|.|.+||+.+++.+..+..+. . ....++|+|+|
T Consensus 152 ---~~-------~~~~~~~~~~~s~dg~~l---~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 218 (300)
T TIGR03866 152 ---NV-------LVDQRPRFAEFTADGKEL---WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG 218 (300)
T ss_pred ---EE-------EcCCCccEEEECCCCCEE---EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC
Confidence 00 000001112223333321 1234568999999999998877765332 1 12468899999
Q ss_pred CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE-eCCCcEEEEeC
Q 004255 382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVL 460 (765)
Q Consensus 382 ~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~-S~dgTVhIwdl 460 (765)
++++.+..++..|.+||+.. + ..+..+..+ ..+.+++|+|||++|+++ ..+++|+|||+
T Consensus 219 ~~~~~~~~~~~~i~v~d~~~-------~----------~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 219 KTAFVALGPANRVAVVDAKT-------Y----------EVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred CEEEEEcCCCCeEEEEECCC-------C----------cEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 98665543344699999854 2 233333222 248899999999999886 46899999999
Q ss_pred CCCCC
Q 004255 461 SPFGG 465 (765)
Q Consensus 461 ~~~gg 465 (765)
.....
T Consensus 279 ~~~~~ 283 (300)
T TIGR03866 279 AALKV 283 (300)
T ss_pred CCCcE
Confidence 87543
No 53
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.68 E-value=3.9e-15 Score=152.02 Aligned_cols=243 Identities=17% Similarity=0.187 Sum_probs=170.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceE-eeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNE-LVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~e-lls~~dg~V~~v~~lP~p~~~~~~d~f~~s 129 (765)
...+..++.-+.|+- .+.-|+.|.-++ ..||+++......+ ...+|.+.|..+.+.|. .
T Consensus 16 ~~~~~~~v~Sv~wn~-------~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~------------~ 76 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNC-------DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK------------H 76 (313)
T ss_pred hhhhhhcceEEEEcc-------cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC------------C
Confidence 344666777777765 356788888776 89999975432222 34566678888888763 2
Q ss_pred CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEE
Q 004255 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAV 207 (765)
Q Consensus 130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV 207 (765)
-++++++++ +++|++||++++++++.+.-...=..+.++| ..+++
T Consensus 77 ~d~~atas~---------------------------------dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~ 123 (313)
T KOG1407|consen 77 PDLFATASG---------------------------------DKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAV 123 (313)
T ss_pred CcceEEecC---------------------------------CceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEE
Confidence 357776543 3689999999999999998876656667776 66666
Q ss_pred Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (765)
Q Consensus 208 ~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~ 286 (765)
+. ++.|.++|+++.+....-+ -+. . .+-+++. -+++.
T Consensus 124 ~~kdD~it~id~r~~~~~~~~~---~~~-------e----~ne~~w~------~~nd~---------------------- 161 (313)
T KOG1407|consen 124 GNKDDRITFIDARTYKIVNEEQ---FKF-------E----VNEISWN------NSNDL---------------------- 161 (313)
T ss_pred ecCcccEEEEEecccceeehhc---ccc-------e----eeeeeec------CCCCE----------------------
Confidence 55 5689999998876443321 100 0 0111110 00000
Q ss_pred CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (765)
Q Consensus 287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~ 366 (765)
+. -...-|+|.|-...+.+++..|+
T Consensus 162 ------Ff-------------------------------------------------lt~GlG~v~ILsypsLkpv~si~ 186 (313)
T KOG1407|consen 162 ------FF-------------------------------------------------LTNGLGCVEILSYPSLKPVQSIK 186 (313)
T ss_pred ------EE-------------------------------------------------EecCCceEEEEeccccccccccc
Confidence 00 01124789999989999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 004255 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (765)
Q Consensus 367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L 446 (765)
+|.....|+.|+|+|++||+||. +..+-+||+... .++..+.|- ..+|..|+||.||++|
T Consensus 187 AH~snCicI~f~p~GryfA~GsA-DAlvSLWD~~EL-----------------iC~R~isRl--dwpVRTlSFS~dg~~l 246 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRYFATGSA-DALVSLWDVDEL-----------------ICERCISRL--DWPVRTLSFSHDGRML 246 (313)
T ss_pred cCCcceEEEEECCCCceEeeccc-cceeeccChhHh-----------------hhheeeccc--cCceEEEEeccCccee
Confidence 99999999999999999999999 567999998542 244444442 3469999999999999
Q ss_pred EEEeCCCcEEEEeCCCC
Q 004255 447 AIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 447 as~S~dgTVhIwdl~~~ 463 (765)
|++|.|..|-|=++++.
T Consensus 247 ASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETG 263 (313)
T ss_pred eccCccceEEeEecccC
Confidence 99999999988777653
No 54
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.67 E-value=4.3e-16 Score=169.73 Aligned_cols=259 Identities=15% Similarity=0.118 Sum_probs=184.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
..+|++.|..++|=.+ ...+|+.|..++ ++||++=+.+.|.+++.+|..+|+.+.+.+.+.
T Consensus 210 ~~gH~kgvsai~~fp~------~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~------------ 271 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPK------KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT------------ 271 (503)
T ss_pred ccCCccccchhhhccc------eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC------------
Confidence 5678888887777332 256888888777 999999877899999999999999999886431
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC---CeEEE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAV 207 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~---~~LaV 207 (765)
-+| .++ -++.|++||++||+++..+.....++.|.+.| +++++
T Consensus 272 ~fL-S~s---------------------------------fD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~ 317 (503)
T KOG0282|consen 272 SFL-SAS---------------------------------FDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLV 317 (503)
T ss_pred eee-eee---------------------------------cceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEE
Confidence 133 221 24799999999999999999888999999987 45555
Q ss_pred -EeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255 208 -GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (765)
Q Consensus 208 -~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~ 286 (765)
+.+.+|..||+++++.++....|-.+ ...+.| -.
T Consensus 318 G~sd~ki~~wDiRs~kvvqeYd~hLg~-------------i~~i~F-------~~------------------------- 352 (503)
T KOG0282|consen 318 GGSDKKIRQWDIRSGKVVQEYDRHLGA-------------ILDITF-------VD------------------------- 352 (503)
T ss_pred ecCCCcEEEEeccchHHHHHHHhhhhh-------------eeeeEE-------cc-------------------------
Confidence 55678999999999865544322110 011111 00
Q ss_pred CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (765)
Q Consensus 287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~ 366 (765)
.|.. .++...|+.++||+...+-.+..+.
T Consensus 353 --~g~r-------------------------------------------------FissSDdks~riWe~~~~v~ik~i~ 381 (503)
T KOG0282|consen 353 --EGRR-------------------------------------------------FISSSDDKSVRIWENRIPVPIKNIA 381 (503)
T ss_pred --CCce-------------------------------------------------EeeeccCccEEEEEcCCCccchhhc
Confidence 0000 1123467899999998876655443
Q ss_pred -cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCC
Q 004255 367 -AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQ 444 (765)
Q Consensus 367 -aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a-~I~slaFSpDg~ 444 (765)
.+.....+|+.+|+|.+++.=|. |..|-+|.+.+.+. ...++-..|+..+ --..|.|||||+
T Consensus 382 ~~~~hsmP~~~~~P~~~~~~aQs~-dN~i~ifs~~~~~r---------------~nkkK~feGh~vaGys~~v~fSpDG~ 445 (503)
T KOG0282|consen 382 DPEMHTMPCLTLHPNGKWFAAQSM-DNYIAIFSTVPPFR---------------LNKKKRFEGHSVAGYSCQVDFSPDGR 445 (503)
T ss_pred chhhccCcceecCCCCCeehhhcc-CceEEEEecccccc---------------cCHhhhhcceeccCceeeEEEcCCCC
Confidence 33345668999999999999998 66799999855211 1112222343322 235689999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcccccccC
Q 004255 445 WIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (765)
Q Consensus 445 ~Las~S~dgTVhIwdl~~~gg~~~~~~h~~ 474 (765)
+|++|+.||.+.+||.++-.....+++|+.
T Consensus 446 ~l~SGdsdG~v~~wdwkt~kl~~~lkah~~ 475 (503)
T KOG0282|consen 446 TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ 475 (503)
T ss_pred eEEeecCCccEEEeechhhhhhhccccCCc
Confidence 999999999999999999888888888864
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=5.6e-15 Score=148.96 Aligned_cols=245 Identities=15% Similarity=0.146 Sum_probs=174.3
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCE
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpL 132 (765)
+..++-|.-++||. | ..-+|.+|.+..+++|+. ..|.+.+++++|.-.|..++..- -.+ -
T Consensus 14 ~~~qgaV~avryN~----d--GnY~ltcGsdrtvrLWNp-~rg~liktYsghG~EVlD~~~s~-----------Dns--k 73 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNV----D--GNYCLTCGSDRTVRLWNP-LRGALIKTYSGHGHEVLDAALSS-----------DNS--K 73 (307)
T ss_pred cccccceEEEEEcc----C--CCEEEEcCCCceEEeecc-cccceeeeecCCCceeeeccccc-----------ccc--c
Confidence 45678899999987 2 256888888889999999 56889999999999998888762 222 3
Q ss_pred EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEE-
Q 004255 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG- 208 (765)
Q Consensus 133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~- 208 (765)
++. |++ ++.|.+||+.||+.++.++.| ..|..|+||. .+|+.|
T Consensus 74 f~s--~Gg-------------------------------Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs 120 (307)
T KOG0316|consen 74 FAS--CGG-------------------------------DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGS 120 (307)
T ss_pred ccc--CCC-------------------------------CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEecc
Confidence 443 321 378999999999999999877 5899999998 466654
Q ss_pred eCCeEEEEECCCC--ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255 209 LATQIYCFDALTL--ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (765)
Q Consensus 209 ~~~~I~iwD~~t~--~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~ 286 (765)
.+..+++||-+.- +.++.|.+... +.+++
T Consensus 121 fD~s~r~wDCRS~s~ePiQildea~D---------------~V~Si---------------------------------- 151 (307)
T KOG0316|consen 121 FDSSVRLWDCRSRSFEPIQILDEAKD---------------GVSSI---------------------------------- 151 (307)
T ss_pred ccceeEEEEcccCCCCccchhhhhcC---------------ceeEE----------------------------------
Confidence 5668999997643 22222211000 00000
Q ss_pred CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (765)
Q Consensus 287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~ 366 (765)
.+.++ -+..++.||+++.||++.|+.....-
T Consensus 152 -------------------------~v~~h------------------------eIvaGS~DGtvRtydiR~G~l~sDy~ 182 (307)
T KOG0316|consen 152 -------------------------DVAEH------------------------EIVAGSVDGTVRTYDIRKGTLSSDYF 182 (307)
T ss_pred -------------------------Eeccc------------------------EEEeeccCCcEEEEEeecceeehhhc
Confidence 00000 02245689999999999998777666
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccccc-EEEEEEccCCCE
Q 004255 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT-IQDICFSHYSQW 445 (765)
Q Consensus 367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~-I~slaFSpDg~~ 445 (765)
+| ||++++|++||+.++.++.+ .++|+-|-.+ | ..|... .|+.+.. =.+++|+.....
T Consensus 183 g~--pit~vs~s~d~nc~La~~l~-stlrLlDk~t-------G----------klL~sY-kGhkn~eykldc~l~qsdth 241 (307)
T KOG0316|consen 183 GH--PITSVSFSKDGNCSLASSLD-STLRLLDKET-------G----------KLLKSY-KGHKNMEYKLDCCLNQSDTH 241 (307)
T ss_pred CC--cceeEEecCCCCEEEEeecc-ceeeecccch-------h----------HHHHHh-cccccceeeeeeeeccccee
Confidence 65 99999999999999999994 5699999755 4 233222 3544331 346788888889
Q ss_pred EEEEeCCCcEEEEeCCCCCCCccc
Q 004255 446 IAIVSSKGTCHVFVLSPFGGDSGF 469 (765)
Q Consensus 446 Las~S~dgTVhIwdl~~~gg~~~~ 469 (765)
+++||.||.|.+||+........+
T Consensus 242 V~sgSEDG~Vy~wdLvd~~~~sk~ 265 (307)
T KOG0316|consen 242 VFSGSEDGKVYFWDLVDETQISKL 265 (307)
T ss_pred EEeccCCceEEEEEeccceeeeee
Confidence 999999999999999875443333
No 56
>PTZ00421 coronin; Provisional
Probab=99.67 E-value=5.1e-14 Score=161.72 Aligned_cols=249 Identities=12% Similarity=0.111 Sum_probs=163.5
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC------cceEeeeeccCCEEEEEEecCCCCCCCCCC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS------NFNELVSKRDGPVSFLQMQPFPVKDDGCEG 125 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g------~~~ells~~dg~V~~v~~lP~p~~~~~~d~ 125 (765)
.+|++.|..+.|+.. .+++|++|..+| ++|||+...+ +....+..|...|.+|++.|..
T Consensus 72 ~GH~~~V~~v~fsP~------d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-------- 137 (493)
T PTZ00421 72 LGQEGPIIDVAFNPF------DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-------- 137 (493)
T ss_pred eCCCCCEEEEEEcCC------CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC--------
Confidence 457888998888652 145788887776 9999996432 2345678899999999998741
Q ss_pred ccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecC--
Q 004255 126 FRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP-- 202 (765)
Q Consensus 126 f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~-- 202 (765)
..+|++.+ .+++|+|||+.+++.+..+.. ...|.+|++++
T Consensus 138 ----~~iLaSgs---------------------------------~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 138 ----MNVLASAG---------------------------------ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred ----CCEEEEEe---------------------------------CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 13665422 136899999999999999875 46899999987
Q ss_pred CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCC
Q 004255 203 RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG 281 (765)
Q Consensus 203 ~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~ 281 (765)
++|+++. ++.|+|||+++++.+.++..|.... ...+.+.+ ..
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~------------~~~~~w~~-------~~------------------ 223 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK------------SQRCLWAK-------RK------------------ 223 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecCCCCc------------ceEEEEcC-------CC------------------
Confidence 5777665 5689999999998888776654310 00111111 00
Q ss_pred CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc-
Q 004255 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA- 360 (765)
Q Consensus 282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~- 360 (765)
+.+++ ...+...|+.|+|||+.+..
T Consensus 224 ---------~~ivt---------------------------------------------~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 224 ---------DLIIT---------------------------------------------LGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred ---------CeEEE---------------------------------------------EecCCCCCCeEEEEeCCCCCC
Confidence 00000 00022458899999998754
Q ss_pred EEEEeccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 004255 361 IISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (765)
Q Consensus 361 ~i~~~~aH-~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaF 439 (765)
.+..+..| ...+....|++++.+|++++..+..|++||+.. + ..++.+. ......+..++|
T Consensus 250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~-------~----------~~~~~~~-~~s~~~~~g~~~ 311 (493)
T PTZ00421 250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN-------E----------RLTFCSS-YSSVEPHKGLCM 311 (493)
T ss_pred ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC-------C----------ceEEEee-ccCCCCCcceEe
Confidence 44444434 345667789999999999986445699999964 2 2222222 223345778889
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 440 SHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 440 SpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
.|. +-+-...-...++|.+...
T Consensus 312 ~pk--~~~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 312 MPK--WSLDTRKCEIARFYALTYH 333 (493)
T ss_pred ccc--ccccccceeeeEEEEecCC
Confidence 884 4444444455688887643
No 57
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=8.6e-14 Score=145.66 Aligned_cols=249 Identities=14% Similarity=0.179 Sum_probs=161.5
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEE
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLL 133 (765)
....|.-..|+. .+.+|+++..+ .+||||+.. +.+.+++....=.|..+.+.- ... .+|
T Consensus 13 ~~~~i~sl~fs~-------~G~~litss~dDsl~LYd~~~-g~~~~ti~skkyG~~~~~Fth-----------~~~-~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSD-------DGLLLITSSEDDSLRLYDSLS-GKQVKTINSKKYGVDLACFTH-----------HSN-TVI 72 (311)
T ss_pred CCCceeEEEecC-------CCCEEEEecCCCeEEEEEcCC-CceeeEeecccccccEEEEec-----------CCc-eEE
Confidence 567777777765 35677776655 899999964 656666655544466666551 111 122
Q ss_pred EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---CeEEEEe
Q 004255 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAVGL 209 (765)
Q Consensus 134 avv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~~LaV~~ 209 (765)
. + .+ .-+.+||.-++.++++++.+..| ..|.+++.+| .+|-++.
T Consensus 73 ~--s--St----------------------------k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~ 120 (311)
T KOG1446|consen 73 H--S--ST----------------------------KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSL 120 (311)
T ss_pred E--c--cC----------------------------CCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEeccc
Confidence 1 1 10 01369999999999999999977 5899999998 4666788
Q ss_pred CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCC
Q 004255 210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (765)
Q Consensus 210 ~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~ 289 (765)
|++|++||+++-++...+.-...| .+|+.|.-|.++
T Consensus 121 D~tvrLWDlR~~~cqg~l~~~~~p---------------i~AfDp~GLifA----------------------------- 156 (311)
T KOG1446|consen 121 DKTVRLWDLRVKKCQGLLNLSGRP---------------IAAFDPEGLIFA----------------------------- 156 (311)
T ss_pred CCeEEeeEecCCCCceEEecCCCc---------------ceeECCCCcEEE-----------------------------
Confidence 889999999987765555432221 234433111111
Q ss_pred CCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC--cEEEEec-
Q 004255 290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFK- 366 (765)
Q Consensus 290 ~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~--~~i~~~~- 366 (765)
.+...+.|+|||+++- .+-.+|.
T Consensus 157 ------------------------------------------------------~~~~~~~IkLyD~Rs~dkgPF~tf~i 182 (311)
T KOG1446|consen 157 ------------------------------------------------------LANGSELIKLYDLRSFDKGPFTTFSI 182 (311)
T ss_pred ------------------------------------------------------EecCCCeEEEEEecccCCCCceeEcc
Confidence 1112237889998763 2333443
Q ss_pred --cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 004255 367 --AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ 444 (765)
Q Consensus 367 --aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~ 444 (765)
+-....+.|.|||||++|+-+.. +..+.|.|.-. |. ..+-+........-. .+.+|+|||+
T Consensus 183 ~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~-------G~--------~~~tfs~~~~~~~~~-~~a~ftPds~ 245 (311)
T KOG1446|consen 183 TDNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFD-------GT--------VKSTFSGYPNAGNLP-LSATFTPDSK 245 (311)
T ss_pred CCCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccC-------Cc--------EeeeEeeccCCCCcc-eeEEECCCCc
Confidence 34678899999999999988877 44689999743 41 122223322211112 5789999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcccc
Q 004255 445 WIAIVSSKGTCHVFVLSPFGGDSGFQ 470 (765)
Q Consensus 445 ~Las~S~dgTVhIwdl~~~gg~~~~~ 470 (765)
++.+|+.||+||+|++++......++
T Consensus 246 Fvl~gs~dg~i~vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNLETGKKVAVLR 271 (311)
T ss_pred EEEEecCCCcEEEEEcCCCcEeeEec
Confidence 99999999999999997644333333
No 58
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=4e-15 Score=162.49 Aligned_cols=245 Identities=15% Similarity=0.169 Sum_probs=175.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
..++.+.|....|..- .+.=+++...-++|||+.. .-.+.+++++=+..|..+.| ++.+-
T Consensus 22 ~~ke~~~vssl~fsp~------~P~d~aVt~S~rvqly~~~-~~~~~k~~srFk~~v~s~~f-------------R~DG~ 81 (487)
T KOG0310|consen 22 VHKEHNSVSSLCFSPK------HPYDFAVTSSVRVQLYSSV-TRSVRKTFSRFKDVVYSVDF-------------RSDGR 81 (487)
T ss_pred cccccCcceeEecCCC------CCCceEEecccEEEEEecc-hhhhhhhHHhhccceeEEEe-------------ecCCe
Confidence 3445566666666541 2334677778889999984 45577778877778888874 44455
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---CeEEE
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAV 207 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~~LaV 207 (765)
|||. ||. .+.|+++|+++...+..+.-+ .+|..+.|++ .+++.
T Consensus 82 Llaa--GD~-------------------------------sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s 128 (487)
T KOG0310|consen 82 LLAA--GDE-------------------------------SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVS 128 (487)
T ss_pred EEEc--cCC-------------------------------cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEe
Confidence 7753 554 268999999887777777654 6999999988 46666
Q ss_pred EeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255 208 GLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (765)
Q Consensus 208 ~~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~ 286 (765)
|.|+ .+++||+.+......|.+|..- ....+++
T Consensus 129 ~sDd~v~k~~d~s~a~v~~~l~~htDY-------------VR~g~~~--------------------------------- 162 (487)
T KOG0310|consen 129 GSDDKVVKYWDLSTAYVQAELSGHTDY-------------VRCGDIS--------------------------------- 162 (487)
T ss_pred cCCCceEEEEEcCCcEEEEEecCCcce-------------eEeeccc---------------------------------
Confidence 7666 4899999988754455555540 0111111
Q ss_pred CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC-cEEEEe
Q 004255 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQF 365 (765)
Q Consensus 287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~-~~i~~~ 365 (765)
|.++.+ ..+|++||.|++||+.+. ..+..|
T Consensus 163 -~~~~hi------------------------------------------------vvtGsYDg~vrl~DtR~~~~~v~el 193 (487)
T KOG0310|consen 163 -PANDHI------------------------------------------------VVTGSYDGKVRLWDTRSLTSRVVEL 193 (487)
T ss_pred -cCCCeE------------------------------------------------EEecCCCceEEEEEeccCCceeEEe
Confidence 111111 235689999999999987 555555
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 004255 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (765)
Q Consensus 366 ~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~ 445 (765)
.|..||..+.|=|.|.++|||+ |..|||||+.. |. +.++.+ ..|...|+|+.+..|++.
T Consensus 194 -nhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~-------G~---------qll~~~--~~H~KtVTcL~l~s~~~r 252 (487)
T KOG0310|consen 194 -NHGCPVESVLALPSGSLIASAG--GNSVKVWDLTT-------GG---------QLLTSM--FNHNKTVTCLRLASDSTR 252 (487)
T ss_pred -cCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecC-------Cc---------eehhhh--hcccceEEEEEeecCCce
Confidence 5888999999999999999998 67899999965 31 444443 335567999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCC
Q 004255 446 IAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 446 Las~S~dgTVhIwdl~~~gg 465 (765)
|.+++-|+.|+|||+..++-
T Consensus 253 LlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 253 LLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred EeecccccceEEEEccceEE
Confidence 99999999999999887754
No 59
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=8.7e-15 Score=164.51 Aligned_cols=237 Identities=19% Similarity=0.195 Sum_probs=175.4
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEE
Q 004255 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL 134 (765)
Q Consensus 56 ~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLa 134 (765)
.+.|.-+.++. .++.|++|+.+| ++|||+......+.+...|.+.|.++++.. .++
T Consensus 217 ~~~vtSv~ws~-------~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~----------------~~l 273 (484)
T KOG0305|consen 217 EELVTSVKWSP-------DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS----------------SVL 273 (484)
T ss_pred CCceEEEEECC-------CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC----------------ceE
Confidence 45555555544 478999999998 899999776655555555899999999872 222
Q ss_pred EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEE-EeC-CCCEEEEEecC--CeEEEEe-
Q 004255 135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHV-LRF-RSSVCMVRCSP--RIVAVGL- 209 (765)
Q Consensus 135 vv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~t-L~~-~s~V~sV~~s~--~~LaV~~- 209 (765)
. +|. -++.|..+|++..+.+.. +.. ...|+.+++++ +.||+|.
T Consensus 274 s-sGs-------------------------------r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn 321 (484)
T KOG0305|consen 274 S-SGS-------------------------------RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN 321 (484)
T ss_pred E-Eec-------------------------------CCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC
Confidence 2 221 136899999998876555 664 46999999987 7888854
Q ss_pred CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255 210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (765)
Q Consensus 210 ~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~ 286 (765)
|+.++|||..+.+.++++.+|.. .+..++++| ..||.++
T Consensus 322 DN~~~Iwd~~~~~p~~~~~~H~a-------------AVKA~awcP~q~~lLAsGG------------------------- 363 (484)
T KOG0305|consen 322 DNVVFIWDGLSPEPKFTFTEHTA-------------AVKALAWCPWQSGLLATGG------------------------- 363 (484)
T ss_pred ccceEeccCCCccccEEEeccce-------------eeeEeeeCCCccCceEEcC-------------------------
Confidence 67899999988888888888765 234566655 3333332
Q ss_pred CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (765)
Q Consensus 287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~ 366 (765)
+..|+.|++||..+++.+..+.
T Consensus 364 ----------------------------------------------------------Gs~D~~i~fwn~~~g~~i~~vd 385 (484)
T KOG0305|consen 364 ----------------------------------------------------------GSADRCIKFWNTNTGARIDSVD 385 (484)
T ss_pred ----------------------------------------------------------CCcccEEEEEEcCCCcEecccc
Confidence 3468999999999999888776
Q ss_pred cCCCCeEEEEECCCCCEEEEE-EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 004255 367 AHTSPISALCFDPSGTLLVTA-SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (765)
Q Consensus 367 aH~~~IsaLaFSpdG~lLATa-S~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~ 445 (765)
.. +-|..|.|++..+-|+++ +.-...|.||+.... .++..+. || ...|..+++||||..
T Consensus 386 tg-sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-----------------~~~~~l~-gH-~~RVl~la~SPdg~~ 445 (484)
T KOG0305|consen 386 TG-SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-----------------KLVAELL-GH-TSRVLYLALSPDGET 445 (484)
T ss_pred cC-CceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-----------------ceeeeec-CC-cceeEEEEECCCCCE
Confidence 54 679999999988655554 333446999998331 3444553 53 456999999999999
Q ss_pred EEEEeCCCcEEEEeCCCC
Q 004255 446 IAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 446 Las~S~dgTVhIwdl~~~ 463 (765)
|++++.|.|+++|++-+.
T Consensus 446 i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 446 IVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEecccCcEEeccccCC
Confidence 999999999999999765
No 60
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.66 E-value=5.9e-14 Score=148.93 Aligned_cols=284 Identities=18% Similarity=0.194 Sum_probs=177.8
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
..++||.|..+.|.- ++.+|++|.-+| ++||.+........+. ++|.-|.++-+- ...
T Consensus 102 ltgHKDSVt~~~Fsh-------dgtlLATGdmsG~v~v~~~stg~~~~~~~----~e~~dieWl~WH----------p~a 160 (399)
T KOG0296|consen 102 LTGHKDSVTCCSFSH-------DGTLLATGDMSGKVLVFKVSTGGEQWKLD----QEVEDIEWLKWH----------PRA 160 (399)
T ss_pred ecCCCCceEEEEEcc-------CceEEEecCCCccEEEEEcccCceEEEee----cccCceEEEEec----------ccc
Confidence 346999999999965 478999999888 9999996543333333 445555555431 112
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-CEEEEEecC--CeEEE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAV 207 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s-~V~sV~~s~--~~LaV 207 (765)
++|+. |. .++.|-.|.+-++.+.+.+..++ ++.+=.|.| +++++
T Consensus 161 ~illA--G~-------------------------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 161 HILLA--GS-------------------------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT 207 (399)
T ss_pred cEEEe--ec-------------------------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE
Confidence 34432 21 13679999999888888888764 666666665 77777
Q ss_pred EeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCC-c--eecC--CccccCCCC-CC
Q 004255 208 GLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNT-L--LLSN--SGRLSPQNL-TP 279 (765)
Q Consensus 208 ~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp-r~LAyas~~-~--~~~~--~G~~s~~~l-t~ 279 (765)
+.+ +.|++||+.|++.++++....-.. ..+++++- -+++..++. . ..++ +|.+..-.. +.
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~------------~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~ 275 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGLE------------LPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTV 275 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccCc------------CCccccccccceeEeccCCccEEEEccccceEEEecCCCC
Confidence 765 579999999999999887311000 01222322 233333221 0 1110 011100000 00
Q ss_pred CCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCcccccccc-ccccCCCCeEEEEECCC
Q 004255 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHA-GADMDNAGIVVVKDFVT 358 (765)
Q Consensus 280 ~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~-~~~~~~dG~V~IwDl~s 358 (765)
+.+ .++....+ .+-+.+|-.+. .+ -+.+.-||+|.|||+..
T Consensus 276 ~~l----~~~~e~~~---------------------esve~~~~ss~-------------lpL~A~G~vdG~i~iyD~a~ 317 (399)
T KOG0296|consen 276 PEL----KPSQEELD---------------------ESVESIPSSSK-------------LPLAACGSVDGTIAIYDLAA 317 (399)
T ss_pred ccc----cccchhhh---------------------hhhhhcccccc-------------cchhhcccccceEEEEeccc
Confidence 000 00000000 00000111000 11 23567899999999998
Q ss_pred CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 004255 359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC 438 (765)
Q Consensus 359 ~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~sla 438 (765)
.+.. .+-.|..+|..|.|-+ -.+|+||+.+|+ ||.||.++ | +.+++++ |+ +..|++++
T Consensus 318 ~~~R-~~c~he~~V~~l~w~~-t~~l~t~c~~g~-v~~wDaRt-------G----------~l~~~y~-GH-~~~Il~f~ 375 (399)
T KOG0296|consen 318 STLR-HICEHEDGVTKLKWLN-TDYLLTACANGK-VRQWDART-------G----------QLKFTYT-GH-QMGILDFA 375 (399)
T ss_pred chhh-eeccCCCceEEEEEcC-cchheeeccCce-EEeeeccc-------c----------ceEEEEe-cC-chheeEEE
Confidence 7654 4456889999999999 678888888775 99999977 5 5777774 64 46799999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCC
Q 004255 439 FSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 439 FSpDg~~Las~S~dgTVhIwdl~ 461 (765)
.+||.++++++|.|+|.+||++.
T Consensus 376 ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 376 LSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999874
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.4e-15 Score=172.46 Aligned_cols=212 Identities=13% Similarity=0.185 Sum_probs=151.9
Q ss_pred CEEEEEECCCCeEEEEEe-CCCCEEEEEecC--CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 004255 173 TAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~-~~s~V~sV~~s~--~~LaV~~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (765)
++|++||-+=|.+++.+. +.++|..|.|.+ -++++|.|+ +|++|+..+-+|+++|.+|-.= ..
T Consensus 31 G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY-------------VR 97 (1202)
T KOG0292|consen 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY-------------VR 97 (1202)
T ss_pred ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce-------------eE
Confidence 589999999999999886 567999999998 366666555 7999999999999999887541 11
Q ss_pred eeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCC
Q 004255 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (765)
Q Consensus 249 ~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~ 328 (765)
.+.|.+ .- |
T Consensus 98 t~~FHh-------ey----------------------------------------------------------------P 106 (1202)
T KOG0292|consen 98 TVFFHH-------EY----------------------------------------------------------------P 106 (1202)
T ss_pred EeeccC-------CC----------------------------------------------------------------c
Confidence 222322 00 0
Q ss_pred ccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 004255 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (765)
Q Consensus 329 ~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~s 408 (765)
| +.+++.|.+|+||+..++++++.+.+|..-|.|..|+|...++++||-| .+|||||+.-...++..
T Consensus 107 ------W------IlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLD-QTVRVWDisGLRkk~~~ 173 (1202)
T KOG0292|consen 107 ------W------ILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLD-QTVRVWDISGLRKKNKA 173 (1202)
T ss_pred ------e------EEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEeccc-ceEEEEeecchhccCCC
Confidence 0 1234568899999999999999999999999999999999999999995 56999999532111110
Q ss_pred -C--------CC-ccccCC--cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC-C-cccccccC
Q 004255 409 -G--------NH-KYDWNS--SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG-D-SGFQTLSS 474 (765)
Q Consensus 409 -G--------~~-~~~~~~--s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg-~-~~~~~h~~ 474 (765)
| .+ ..++-+ ...-.+.| .|++++ |.-++|+|.--.|++|++|.-|++|.++..+- + -+-++|.+
T Consensus 174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VL-EGHDRG-VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n 251 (1202)
T KOG0292|consen 174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVL-EGHDRG-VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN 251 (1202)
T ss_pred CCCchhhhhccccchhhcCCcCeeeeeee-cccccc-cceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC
Confidence 0 00 011111 11222333 466654 88899999999999999999999999987654 2 24578876
Q ss_pred CCCCCcccc
Q 004255 475 QGGDPYLFP 483 (765)
Q Consensus 475 ~~~~~~~~p 483 (765)
.+..-...|
T Consensus 252 nVssvlfhp 260 (1202)
T KOG0292|consen 252 NVSSVLFHP 260 (1202)
T ss_pred CcceEEecC
Confidence 554433333
No 62
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.65 E-value=1.7e-14 Score=149.85 Aligned_cols=222 Identities=16% Similarity=0.213 Sum_probs=163.5
Q ss_pred CeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCC
Q 004255 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (765)
Q Consensus 75 ~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~ 154 (765)
..+|.+|.+..+++||++ +|++..-+..|..-|..+. |. .-.|. +|+++.
T Consensus 103 s~i~S~gtDk~v~~wD~~-tG~~~rk~k~h~~~vNs~~--p~-----------rrg~~-lv~Sgs--------------- 152 (338)
T KOG0265|consen 103 SHILSCGTDKTVRGWDAE-TGKRIRKHKGHTSFVNSLD--PS-----------RRGPQ-LVCSGS--------------- 152 (338)
T ss_pred CEEEEecCCceEEEEecc-cceeeehhccccceeeecC--cc-----------ccCCe-EEEecC---------------
Confidence 456666666789999995 6777666667777777665 31 11233 334432
Q ss_pred CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecC
Q 004255 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYP 231 (765)
Q Consensus 155 ~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~---~~LaV~~~~~I~iwD~~t~~~l~tl~t~p 231 (765)
.+++++|||+++.+.+++++-.-.+.+|.|+. +.+..+.++.|++||++..+.++++.+|.
T Consensus 153 ----------------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~ 216 (338)
T KOG0265|consen 153 ----------------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHA 216 (338)
T ss_pred ----------------CCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeeccc
Confidence 25899999999999999998888999999986 56666778899999999999999999887
Q ss_pred CcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccce
Q 004255 232 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK 311 (765)
Q Consensus 232 ~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~k 311 (765)
.+ ...+++++ |+. +
T Consensus 217 Dt-------------It~lsls~----~gs------------------------~------------------------- 230 (338)
T KOG0265|consen 217 DT-------------ITGLSLSR----YGS------------------------F------------------------- 230 (338)
T ss_pred Cc-------------eeeEEecc----CCC------------------------c-------------------------
Confidence 64 12334322 000 0
Q ss_pred eecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC----CcEEEEeccCCC----CeEEEEECCCCCE
Q 004255 312 TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT----RAIISQFKAHTS----PISALCFDPSGTL 383 (765)
Q Consensus 312 tls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s----~~~i~~~~aH~~----~IsaLaFSpdG~l 383 (765)
+.+-.-|.++++||++- .+++..|.+|.. ....++|+|+++.
T Consensus 231 ------------------------------llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~ 280 (338)
T KOG0265|consen 231 ------------------------------LLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK 280 (338)
T ss_pred ------------------------------cccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc
Confidence 00112467999999864 356888888743 4567899999999
Q ss_pred EEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 004255 384 LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458 (765)
Q Consensus 384 LATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIw 458 (765)
+..+|. ++.+.|||... ...+|+|- |+ ...|.+++|+|.-..|.+++.|.||.+=
T Consensus 281 i~ags~-dr~vyvwd~~~-----------------r~~lyklp-Gh-~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 281 ITAGSA-DRFVYVWDTTS-----------------RRILYKLP-GH-YGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred cccccc-cceEEEeeccc-----------------ccEEEEcC-Cc-ceeEEEeeecCCCcEEEEeccCceeEee
Confidence 999998 56799999843 14788885 54 4579999999999999999999999863
No 63
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.65 E-value=6.6e-14 Score=153.93 Aligned_cols=282 Identities=17% Similarity=0.169 Sum_probs=172.6
Q ss_pred EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCC
Q 004255 86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS 165 (765)
Q Consensus 86 ~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~ 165 (765)
+-+-++++.. ..+++..|..+|..++++|.. | .+|. ||.
T Consensus 41 v~ir~i~~~~-~~~iYtEH~~~vtVAkySPsG--------~-----yiAS--GD~------------------------- 79 (603)
T KOG0318|consen 41 VIIRNIDNPA-SVDIYTEHAHQVTVAKYSPSG--------F-----YIAS--GDV------------------------- 79 (603)
T ss_pred EEEEECCCcc-ceeeeccccceeEEEEeCCCc--------e-----EEee--cCC-------------------------
Confidence 5666775433 457888898999999999852 2 5543 432
Q ss_pred CCCCCCCCEEEEEECCCCeEEE--EEe-CCCCEEEEEecC---CeEEEEeCC----eEEEEECCCCceeEEEEecCCccc
Q 004255 166 GNCVNSPTAVRFYSFQSHCYEH--VLR-FRSSVCMVRCSP---RIVAVGLAT----QIYCFDALTLENKFSVLTYPVPQL 235 (765)
Q Consensus 166 ~~~~~~p~tV~lWdlktg~~v~--tL~-~~s~V~sV~~s~---~~LaV~~~~----~I~iwD~~t~~~l~tl~t~p~p~~ 235 (765)
.++|||||....+.+- +++ |.++|.+|+.+. |++|||-.. .++.||- +...-.+.+|..
T Consensus 80 ------sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS--G~SvGei~GhSr--- 148 (603)
T KOG0318|consen 80 ------SGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS--GNSVGEITGHSR--- 148 (603)
T ss_pred ------cCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecC--CCccceeeccce---
Confidence 3689999997644333 332 568999999875 455555432 2777774 434455666654
Q ss_pred CCCCccccccccceeEEcc---ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccccee
Q 004255 236 AGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 312 (765)
Q Consensus 236 ~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~kt 312 (765)
..++++|-| =.+|.++++..+.-. ..| +.-|..+.+ .
T Consensus 149 ----------~ins~~~KpsRPfRi~T~sdDn~v~ff--------eGP--PFKFk~s~r--------------------~ 188 (603)
T KOG0318|consen 149 ----------RINSVDFKPSRPFRIATGSDDNTVAFF--------EGP--PFKFKSSFR--------------------E 188 (603)
T ss_pred ----------eEeeeeccCCCceEEEeccCCCeEEEe--------eCC--Ceeeeeccc--------------------c
Confidence 134566654 245666665322110 000 000000000 0
Q ss_pred ecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec---cCCCCeEEEEECCCCCEEEEEEc
Q 004255 313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK---AHTSPISALCFDPSGTLLVTASV 389 (765)
Q Consensus 313 ls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~---aH~~~IsaLaFSpdG~lLATaS~ 389 (765)
=+++. ...-++|++. -.++++.||.|.|||=.+++.+..|. +|++.|.+|+|+||++.|+|+|.
T Consensus 189 HskFV---------~~VRysPDG~----~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa 255 (603)
T KOG0318|consen 189 HSKFV---------NCVRYSPDGS----RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA 255 (603)
T ss_pred cccce---------eeEEECCCCC----eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC
Confidence 01111 1111222221 24567889999999999999999998 99999999999999999999999
Q ss_pred CCCEEEEEeCCCCccc--------------------------CCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 004255 390 YGNNINIFRIMPSCMR--------------------------SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (765)
Q Consensus 390 dGt~IrVWdi~~~~~~--------------------------~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg 443 (765)
|+++||||+.+.... +..|.-.+.-......+ +...|+ +..|++++.++|+
T Consensus 256 -Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~-~~i~GH-nK~ITaLtv~~d~ 332 (603)
T KOG0318|consen 256 -DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVL-KVISGH-NKSITALTVSPDG 332 (603)
T ss_pred -CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChh-heeccc-ccceeEEEEcCCC
Confidence 667999999764210 01111000000011122 223353 4569999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCc-ccccccCC
Q 004255 444 QWIAIVSSKGTCHVFVLSPFGGDS-GFQTLSSQ 475 (765)
Q Consensus 444 ~~Las~S~dgTVhIwdl~~~gg~~-~~~~h~~~ 475 (765)
++|.++|.||.|.=|++....... .-+.|+++
T Consensus 333 ~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nq 365 (603)
T KOG0318|consen 333 KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQ 365 (603)
T ss_pred CEEEeeccCceEEEEecCCccccccccccccce
Confidence 999999999999999997643322 22567654
No 64
>PTZ00420 coronin; Provisional
Probab=99.64 E-value=1.4e-13 Score=159.57 Aligned_cols=130 Identities=9% Similarity=0.131 Sum_probs=98.0
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc-------ceEeeeeccCCEEEEEEecCCCCCCCC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN-------FNELVSKRDGPVSFLQMQPFPVKDDGC 123 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~-------~~ells~~dg~V~~v~~lP~p~~~~~~ 123 (765)
..+|++.|..+.|..- .+.+|++|..+| ++|||+...+. ....+..|.+.|..|++.|+.
T Consensus 70 L~gH~~~V~~lafsP~------~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g------ 137 (568)
T PTZ00420 70 LKGHTSSILDLQFNPC------FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN------ 137 (568)
T ss_pred EcCCCCCEEEEEEcCC------CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC------
Confidence 4567888888888651 145888888776 99999964332 223567888999999999741
Q ss_pred CCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC-
Q 004255 124 EGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP- 202 (765)
Q Consensus 124 d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~- 202 (765)
..+|++ ++ .+++|+|||+++++.+..+.++..|.++++++
T Consensus 138 ------~~iLaS-gS--------------------------------~DgtIrIWDl~tg~~~~~i~~~~~V~Slswspd 178 (568)
T PTZ00420 138 ------YYIMCS-SG--------------------------------FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIK 178 (568)
T ss_pred ------CeEEEE-Ee--------------------------------CCCeEEEEECCCCcEEEEEecCCcEEEEEECCC
Confidence 124443 22 13689999999999998888888999999987
Q ss_pred -CeEEEEe-CCeEEEEECCCCceeEEEEecCC
Q 004255 203 -RIVAVGL-ATQIYCFDALTLENKFSVLTYPV 232 (765)
Q Consensus 203 -~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~ 232 (765)
++|+++. +++|+|||+++++.+.++..|..
T Consensus 179 G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g 210 (568)
T PTZ00420 179 GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDG 210 (568)
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEEecccC
Confidence 6777665 66899999999998888877654
No 65
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=7.4e-14 Score=143.41 Aligned_cols=204 Identities=21% Similarity=0.262 Sum_probs=153.7
Q ss_pred eEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 004255 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (765)
Q Consensus 98 ~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~l 177 (765)
...+++|.+.|..+++.|- ++.+||.++ .+++||+
T Consensus 7 ~~~~~gh~~r~W~~awhp~------------~g~ilAscg---------------------------------~Dk~vri 41 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPG------------KGVILASCG---------------------------------TDKAVRI 41 (312)
T ss_pred EEeecCCCCcEEEEEeccC------------CceEEEeec---------------------------------CCceEEE
Confidence 4578888899999999872 223666522 1479999
Q ss_pred EECCC---CeEEEEEe-C-CCCEEEEEecC--CeEEEE-eCCeEEEEECC--CCceeEEEEecCCcccCCCCcccccccc
Q 004255 178 YSFQS---HCYEHVLR-F-RSSVCMVRCSP--RIVAVG-LATQIYCFDAL--TLENKFSVLTYPVPQLAGQGAVGINVGY 247 (765)
Q Consensus 178 Wdlkt---g~~v~tL~-~-~s~V~sV~~s~--~~LaV~-~~~~I~iwD~~--t~~~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (765)
|++.. =.+...|. + .-.|.+|+++| ++||++ ++.++.||.=. ++++..+|.+|.+. +
T Consensus 42 w~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE-------------V 108 (312)
T KOG0645|consen 42 WSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE-------------V 108 (312)
T ss_pred EecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc-------------e
Confidence 99984 34555553 3 35899999987 889886 46689999644 56788889998873 3
Q ss_pred ceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCC
Q 004255 248 GPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (765)
Q Consensus 248 ~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s 325 (765)
..+|+++ +|||.++
T Consensus 109 K~Vaws~sG~~LATCS---------------------------------------------------------------- 124 (312)
T KOG0645|consen 109 KCVAWSASGNYLATCS---------------------------------------------------------------- 124 (312)
T ss_pred eEEEEcCCCCEEEEee----------------------------------------------------------------
Confidence 4567765 5665554
Q ss_pred CCCccCCCccccccccccccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 004255 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 402 (765)
Q Consensus 326 ~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~---~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~ 402 (765)
.|..|-||.+..+ .++..|+.|+.-|-.+.|+|.-.+|+|+|-|. +||+|+-.+.
T Consensus 125 ---------------------RDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn-TIk~~~~~~d 182 (312)
T KOG0645|consen 125 ---------------------RDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN-TIKVYRDEDD 182 (312)
T ss_pred ---------------------CCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC-eEEEEeecCC
Confidence 3556778877643 57889999999999999999999999999955 6999986431
Q ss_pred cccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 403 ~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
+ +| .++.+|. |++ ..|++++|+++|..|+++++|+|++||..-
T Consensus 183 ------d----dW----~c~~tl~-g~~-~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 183 ------D----DW----ECVQTLD-GHE-NTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ------C----Ce----eEEEEec-Ccc-ceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 1 22 4666664 444 379999999999999999999999999864
No 66
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.3e-13 Score=141.71 Aligned_cols=259 Identities=14% Similarity=0.147 Sum_probs=170.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCC--CcceEeee-eccCCEEEEEEecCCCCCCCCCCcc
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDA--SNFNELVS-KRDGPVSFLQMQPFPVKDDGCEGFR 127 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~--g~~~ells-~~dg~V~~v~~lP~p~~~~~~d~f~ 127 (765)
.+++||++--+.|..- .+.+|++|..+ .++||+.... =.++.+++ .|...|+.+++.|-
T Consensus 10 ~~gh~~r~W~~awhp~------~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~----------- 72 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPG------KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH----------- 72 (312)
T ss_pred ecCCCCcEEEEEeccC------CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC-----------
Confidence 5678888877777651 15689988876 5999999632 23454553 46678999999984
Q ss_pred ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC--eEEEEEeCC-CCEEEEEecC--
Q 004255 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--CYEHVLRFR-SSVCMVRCSP-- 202 (765)
Q Consensus 128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg--~~v~tL~~~-s~V~sV~~s~-- 202 (765)
..+||..+- +.++.||.-..+ +++.+|+.| +.|.+|++++
T Consensus 73 --g~~La~aSF---------------------------------D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG 117 (312)
T KOG0645|consen 73 --GRYLASASF---------------------------------DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG 117 (312)
T ss_pred --CcEEEEeec---------------------------------cceEEEeecCCCceeEEeeeeccccceeEEEEcCCC
Confidence 227765221 358899976644 688999876 6999999986
Q ss_pred CeEEEEeCC-eEEEEECCCC---ceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCC
Q 004255 203 RIVAVGLAT-QIYCFDALTL---ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQN 276 (765)
Q Consensus 203 ~~LaV~~~~-~I~iwD~~t~---~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~ 276 (765)
++||.+.-+ .|-||.+... ++.-.|..|.- ++ .-+.+.| ..
T Consensus 118 ~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq---------DV----K~V~WHPt~dl-------------------- 164 (312)
T KOG0645|consen 118 NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ---------DV----KHVIWHPTEDL-------------------- 164 (312)
T ss_pred CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc---------cc----cEEEEcCCcce--------------------
Confidence 899998754 6999987633 23333433332 00 1122222 11
Q ss_pred CCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEEC
Q 004255 277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 356 (765)
Q Consensus 277 lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl 356 (765)
++++++|.+|++|+-
T Consensus 165 -----------------------------------------------------------------L~S~SYDnTIk~~~~ 179 (312)
T KOG0645|consen 165 -----------------------------------------------------------------LFSCSYDNTIKVYRD 179 (312)
T ss_pred -----------------------------------------------------------------eEEeccCCeEEEEee
Confidence 224567888999976
Q ss_pred CC---CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc-cccC---------CcceEEE
Q 004255 357 VT---RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK-YDWN---------SSHVHLY 423 (765)
Q Consensus 357 ~s---~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~-~~~~---------~s~~~l~ 423 (765)
.. -.++++|.+|...|.+++|++.|..|++|+.|++ ++||.....-..-.++... ..|. .....+|
T Consensus 180 ~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf 258 (312)
T KOG0645|consen 180 EDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLF 258 (312)
T ss_pred cCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEE
Confidence 62 2588999999999999999999999999999665 9999843211000001000 0010 0001111
Q ss_pred EEe--------------cccccccEEEEEEccC-CCEEEEEeCCCcEEEEeCC
Q 004255 424 KLH--------------RGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 424 ~l~--------------rG~~~a~I~slaFSpD-g~~Las~S~dgTVhIwdl~ 461 (765)
+-. .+.|...|.+++|.|. ...|+++++||+|++|.+.
T Consensus 259 ~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 259 KESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 111 1223346999999995 6899999999999999874
No 67
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=1.2e-14 Score=155.81 Aligned_cols=282 Identities=15% Similarity=0.140 Sum_probs=180.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc--ceEeeeeccCCEEEEEEecCCCCCCCCCCccc
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRK 128 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~--~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~ 128 (765)
.++++|+|=++.|-. .++.||+++.+. .-||++..... +..++-+|..+|..+.++|+
T Consensus 220 l~~htdEVWfl~FS~-------nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD------------ 280 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSH-------NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD------------ 280 (519)
T ss_pred HhhCCCcEEEEEEcC-------CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC------------
Confidence 567899999888844 588999999885 67888865443 35677888899999999995
Q ss_pred cCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CCEEEEEecC--Ce
Q 004255 129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP--RI 204 (765)
Q Consensus 129 srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~--s~V~sV~~s~--~~ 204 (765)
.|.||+ ++. +..+++||..+|++.+.+... ..+.+++..| ..
T Consensus 281 dryLla-Cg~---------------------------------~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~ 326 (519)
T KOG0293|consen 281 DRYLLA-CGF---------------------------------DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR 326 (519)
T ss_pred CCeEEe-cCc---------------------------------hHheeeccCCcchhhhhcccCcCCCcceeEEccCCce
Confidence 344543 222 135999999999999988754 4777888777 34
Q ss_pred EEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCC
Q 004255 205 VAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSG 281 (765)
Q Consensus 205 LaV-~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~ 281 (765)
+++ +.+.+|.-||+.. ..+...++-..| -...+|+.+ +|+-....+..+.
T Consensus 327 ~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~------------~v~dlait~Dgk~vl~v~~d~~i~-------------- 379 (519)
T KOG0293|consen 327 FVTGSPDRTIIMWDLDG-NILGNWEGVRDP------------KVHDLAITYDGKYVLLVTVDKKIR-------------- 379 (519)
T ss_pred eEecCCCCcEEEecCCc-chhhcccccccc------------eeEEEEEcCCCcEEEEEeccccee--------------
Confidence 555 4566899999753 333333321111 123466665 4443333221110
Q ss_pred CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 004255 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (765)
Q Consensus 282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~ 361 (765)
-|.++.- +-.|++.+-.. .-.++.+.+++..- ..-.+..+++||++..+.
T Consensus 380 --------------l~~~e~~--~dr~lise~~~----------its~~iS~d~k~~L----vnL~~qei~LWDl~e~~l 429 (519)
T KOG0293|consen 380 --------------LYNREAR--VDRGLISEEQP----------ITSFSISKDGKLAL----VNLQDQEIHLWDLEENKL 429 (519)
T ss_pred --------------eechhhh--hhhccccccCc----------eeEEEEcCCCcEEE----EEcccCeeEEeecchhhH
Confidence 0000000 00011000000 00111122222211 123567899999999899
Q ss_pred EEEeccCCCC--eEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 004255 362 ISQFKAHTSP--ISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC 438 (765)
Q Consensus 362 i~~~~aH~~~--IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~sla 438 (765)
+..+.||+.. |-.-||-- +.+++|+||+|++ |+||+... | ..+.+|. |+. ..|.+++
T Consensus 430 v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~s-------g----------kll~~Ls-GHs-~~vNcVs 489 (519)
T KOG0293|consen 430 VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRIS-------G----------KLLAVLS-GHS-KTVNCVS 489 (519)
T ss_pred HHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccC-------C----------ceeEeec-CCc-ceeeEEe
Confidence 9999999753 44456754 5689999999665 99999755 4 4666774 654 4699999
Q ss_pred EccCC-CEEEEEeCCCcEEEEeCCCC
Q 004255 439 FSHYS-QWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 439 FSpDg-~~Las~S~dgTVhIwdl~~~ 463 (765)
|+|.. .++|++|+||||+||.+.+.
T Consensus 490 wNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 490 WNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred cCCCCHHHhhccCCCCeEEEecCCcc
Confidence 99976 67999999999999998764
No 68
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2e-14 Score=146.46 Aligned_cols=229 Identities=15% Similarity=0.150 Sum_probs=155.6
Q ss_pred EEEEEccCCCcceEeeeec-cCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCC
Q 004255 86 FQVLDVEDASNFNELVSKR-DGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQ 164 (765)
Q Consensus 86 ~qVWdv~~~g~~~ells~~-dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~ 164 (765)
+-|.+++....+.+..+-. ...+..|++.++- .+ .+++++||
T Consensus 40 L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~----------e~--~~~~a~GD------------------------- 82 (311)
T KOG0277|consen 40 LFILEVTDPKGIQECQSYDTEDGLFDVAWSENH----------EN--QVIAASGD------------------------- 82 (311)
T ss_pred EEEEecCCCCCeEEEEeeecccceeEeeecCCC----------cc--eEEEEecC-------------------------
Confidence 6777775455565554432 2468889998641 22 44444443
Q ss_pred CCCCCCCCCEEEEEECC-CCeEEEEEe-CCCCEEEEEecC----CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCC
Q 004255 165 SGNCVNSPTAVRFYSFQ-SHCYEHVLR-FRSSVCMVRCSP----RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQ 238 (765)
Q Consensus 165 ~~~~~~~p~tV~lWdlk-tg~~v~tL~-~~s~V~sV~~s~----~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~ 238 (765)
+.++|||+. ....++.++ +..+|++|..|. .+|..+.+++|++||..-.+-+.|..+|..
T Consensus 83 --------GSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~------ 148 (311)
T KOG0277|consen 83 --------GSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS------ 148 (311)
T ss_pred --------ceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCcc------
Confidence 589999974 335677775 456999999886 345556788999999876666666554332
Q ss_pred CccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeeccccc
Q 004255 239 GAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 318 (765)
Q Consensus 239 ~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~ 318 (765)
+.|... ++|....
T Consensus 149 ------------------~Iy~a~-----------------------~sp~~~n-------------------------- 161 (311)
T KOG0277|consen 149 ------------------CIYQAA-----------------------FSPHIPN-------------------------- 161 (311)
T ss_pred ------------------EEEEEe-----------------------cCCCCCC--------------------------
Confidence 112110 0111000
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEE
Q 004255 319 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIF 397 (765)
Q Consensus 319 ~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVW 397 (765)
-.++++.||+++|||++.......|.+|...|.++.|+. +-.+|||++.| +.||+|
T Consensus 162 ----------------------lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd-~~vr~w 218 (311)
T KOG0277|consen 162 ----------------------LFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVD-NLVRGW 218 (311)
T ss_pred ----------------------eEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCC-ceEEEE
Confidence 012446789999999987555555999999999999997 67789999995 569999
Q ss_pred eCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCC-Cccccccc
Q 004255 398 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGG-DSGFQTLS 473 (765)
Q Consensus 398 di~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~gg-~~~~~~h~ 473 (765)
|++.. . .++.+|. |+. -.|..+.|||.. ..||++|-|=|++|||...... ......|+
T Consensus 219 Dir~~------r----------~pl~eL~-gh~-~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht 278 (311)
T KOG0277|consen 219 DIRNL------R----------TPLFELN-GHG-LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT 278 (311)
T ss_pred ehhhc------c----------ccceeec-CCc-eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc
Confidence 99652 1 5788884 543 359999999975 6899999999999999874333 33445554
No 69
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.60 E-value=8.3e-14 Score=151.27 Aligned_cols=112 Identities=19% Similarity=0.342 Sum_probs=83.9
Q ss_pred cccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc--ccCCc
Q 004255 343 ADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY--DWNSS 418 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~-~~i~~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~--~~~~s 418 (765)
++++.|++|.|||+++. +++.+|.+|...|..|.|||. .+.|||++.|+. +.|||+..- |.... +-...
T Consensus 289 AT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~i------g~eq~~eda~dg 361 (422)
T KOG0264|consen 289 ATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRI------GEEQSPEDAEDG 361 (422)
T ss_pred EeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEecccc------ccccChhhhccC
Confidence 35567999999999985 478899999999999999995 678999998765 899999542 21110 00111
Q ss_pred ceEEEEEecccccccEEEEEEccCCCE-EEEEeCCCcEEEEeCCC
Q 004255 419 HVHLYKLHRGITSATIQDICFSHYSQW-IAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 419 ~~~l~~l~rG~~~a~I~slaFSpDg~~-Las~S~dgTVhIwdl~~ 462 (765)
...+.-.++|++ +.|.+++|+|.--| ||+++.|+.++||....
T Consensus 362 ppEllF~HgGH~-~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 362 PPELLFIHGGHT-AKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CcceeEEecCcc-cccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 123333466754 67999999999877 68889999999999863
No 70
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=1.3e-14 Score=162.49 Aligned_cols=240 Identities=18% Similarity=0.158 Sum_probs=163.3
Q ss_pred CCCeEEEEEecCc-EEEEEccCCCc-----ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCC
Q 004255 73 VFKQVLLLGYQNG-FQVLDVEDASN-----FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAP 146 (765)
Q Consensus 73 ~~~~vL~~G~~~G-~qVWdv~~~g~-----~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~ 146 (765)
..++.|.+|.++| |++|++....+ ....+..|..+|..+.+.-+ ++ .|..++
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~------------~~-tlIS~S--------- 92 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN------------GK-TLISAS--------- 92 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC------------CC-ceEEec---------
Confidence 3466888888888 89999954333 23446677788888776522 22 333322
Q ss_pred CCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC--eEEEEEe-CCCCEEEEEe---cCCeEEE-EeCCeEEEEECC
Q 004255 147 GQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--CYEHVLR-FRSSVCMVRC---SPRIVAV-GLATQIYCFDAL 219 (765)
Q Consensus 147 ~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg--~~v~tL~-~~s~V~sV~~---s~~~LaV-~~~~~I~iwD~~ 219 (765)
++++|++|+...+ -+..+|+ +...|.+++. +..++|. |++.+|++||+.
T Consensus 93 ------------------------sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin 148 (735)
T KOG0308|consen 93 ------------------------SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN 148 (735)
T ss_pred ------------------------CCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence 3579999999877 5666775 4568887776 3345554 568899999999
Q ss_pred CCce--eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeee
Q 004255 220 TLEN--KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARY 297 (765)
Q Consensus 220 t~~~--l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~ 297 (765)
++.. ..+...-+. ..+..||+ +. .|
T Consensus 149 ~~~~~l~~s~n~~t~---------------~sl~sG~k-------~s-------------------------------iY 175 (735)
T KOG0308|consen 149 TGTATLVASFNNVTV---------------NSLGSGPK-------DS-------------------------------IY 175 (735)
T ss_pred Ccchhhhhhcccccc---------------ccCCCCCc-------cc-------------------------------ee
Confidence 8732 222111000 00000110 00 00
Q ss_pred hhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE
Q 004255 298 AMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF 377 (765)
Q Consensus 298 a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaF 377 (765)
+ +.-|+.+ .-++.|+..+.+++||.++++.+..|+||+..|.+|-.
T Consensus 176 S------------------------------LA~N~t~----t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~ 221 (735)
T KOG0308|consen 176 S------------------------------LAMNQTG----TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLV 221 (735)
T ss_pred e------------------------------eecCCcc----eEEEecCcccceEEeccccccceeeeeccccceEEEEE
Confidence 0 0001000 11345678899999999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEE
Q 004255 378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (765)
Q Consensus 378 SpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhI 457 (765)
++||+.++|||.||+ |||||+... +++..+.- |...||++.-+|+=+.+.+|+.||.|..
T Consensus 222 ~dDGt~~ls~sSDgt-IrlWdLgqQ-----------------rCl~T~~v--H~e~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 222 NDDGTRLLSASSDGT-IRLWDLGQQ-----------------RCLATYIV--HKEGVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred cCCCCeEeecCCCce-EEeeecccc-----------------ceeeeEEe--ccCceEEEeeCCCcceEEecCCCCcEEe
Confidence 999999999999775 999999431 56666642 3345999999999999999999999999
Q ss_pred EeCCCCCC
Q 004255 458 FVLSPFGG 465 (765)
Q Consensus 458 wdl~~~gg 465 (765)
=|+..+..
T Consensus 282 Tdl~n~~~ 289 (735)
T KOG0308|consen 282 TDLRNPAK 289 (735)
T ss_pred cccCCchh
Confidence 88887643
No 71
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=5.6e-14 Score=146.52 Aligned_cols=228 Identities=18% Similarity=0.255 Sum_probs=149.2
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEE
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL 134 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLa 134 (765)
+..-++-+.|-- ..+++..|.++.++++|++ ++ -...+..|+++|++|+..+- .. .+
T Consensus 53 ~~~plL~c~F~d-------~~~~~~G~~dg~vr~~Dln-~~-~~~~igth~~~i~ci~~~~~-----------~~--~v- 109 (323)
T KOG1036|consen 53 HGAPLLDCAFAD-------ESTIVTGGLDGQVRRYDLN-TG-NEDQIGTHDEGIRCIEYSYE-----------VG--CV- 109 (323)
T ss_pred cCCceeeeeccC-------CceEEEeccCceEEEEEec-CC-cceeeccCCCceEEEEeecc-----------CC--eE-
Confidence 445566666632 1345555555569999994 44 45678889999999998841 12 33
Q ss_pred EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEe-CCeE
Q 004255 135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQI 213 (765)
Q Consensus 135 vv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~-~~~I 213 (765)
++| +|| ++|+|||.+....+.++.-...|+++..+.++|+||. +.+|
T Consensus 110 -Isg---------------------sWD----------~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v 157 (323)
T KOG1036|consen 110 -ISG---------------------SWD----------KTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKV 157 (323)
T ss_pred -EEc---------------------ccC----------ccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceE
Confidence 333 454 6999999998777777777779999999998888855 5679
Q ss_pred EEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcc
Q 004255 214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSL 293 (765)
Q Consensus 214 ~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gsl 293 (765)
.+||+++++..+..++.+. ++....+++-|.-=.| ..
T Consensus 158 ~iyDLRn~~~~~q~reS~l-----------kyqtR~v~~~pn~eGy------~~-------------------------- 194 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRRESSL-----------KYQTRCVALVPNGEGY------VV-------------------------- 194 (323)
T ss_pred EEEEcccccchhhhccccc-----------eeEEEEEEEecCCCce------EE--------------------------
Confidence 9999999987665554433 2223334432210011 00
Q ss_pred eeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC----cEEEEeccCC
Q 004255 294 VARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR----AIISQFKAHT 369 (765)
Q Consensus 294 va~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~----~~i~~~~aH~ 369 (765)
++.+|.|.+=.+... +....|++|.
T Consensus 195 ---------------------------------------------------sSieGRVavE~~d~s~~~~skkyaFkCHr 223 (323)
T KOG1036|consen 195 ---------------------------------------------------SSIEGRVAVEYFDDSEEAQSKKYAFKCHR 223 (323)
T ss_pred ---------------------------------------------------EeecceEEEEccCCchHHhhhceeEEeee
Confidence 011222222111111 1222344442
Q ss_pred ---------CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 004255 370 ---------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (765)
Q Consensus 370 ---------~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS 440 (765)
-||++|+|+|--..||||+.|| .|.+||+.+- +++.+|.+- ...|-+++|+
T Consensus 224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG-~V~~Wd~~~r-----------------Krl~q~~~~--~~SI~slsfs 283 (323)
T KOG1036|consen 224 LSEKDTEIIYPVNAIAFHPIHGTFATGGSDG-IVNIWDLFNR-----------------KRLKQLAKY--ETSISSLSFS 283 (323)
T ss_pred cccCCceEEEEeceeEeccccceEEecCCCc-eEEEccCcch-----------------hhhhhccCC--CCceEEEEec
Confidence 2899999999988899999977 5999998541 466777642 2359999999
Q ss_pred cCCCEEEEEeC
Q 004255 441 HYSQWIAIVSS 451 (765)
Q Consensus 441 pDg~~Las~S~ 451 (765)
.||..||++++
T Consensus 284 ~dG~~LAia~s 294 (323)
T KOG1036|consen 284 MDGSLLAIASS 294 (323)
T ss_pred cCCCeEEEEec
Confidence 99999999974
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.59 E-value=1.8e-13 Score=145.75 Aligned_cols=222 Identities=15% Similarity=0.171 Sum_probs=154.5
Q ss_pred EEEEEecC-cEEEEEccCCCcceEee---eeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255 77 VLLLGYQN-GFQVLDVEDASNFNELV---SKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (765)
Q Consensus 77 vL~~G~~~-G~qVWdv~~~g~~~ell---s~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~ 152 (765)
.|+++..+ .+++|-.+...+..+.+ .+|.++|.+|...++. . .+ +++
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-----------t--r~--~Sg-------------- 211 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-----------T--RF--CSG-------------- 211 (423)
T ss_pred eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-----------C--eE--Eee--------------
Confidence 45555555 59999987655444433 3788899999988541 1 22 222
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECC-------------------------CCeEEEEEeCC-CCEEEEEecCC--e
Q 004255 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQ-------------------------SHCYEHVLRFR-SSVCMVRCSPR--I 204 (765)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlk-------------------------tg~~v~tL~~~-s~V~sV~~s~~--~ 204 (765)
+| +++|+||+.. ++..+-+|..| .+|.+|.+++. +
T Consensus 212 -------S~----------D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~ 274 (423)
T KOG0313|consen 212 -------SW----------DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVI 274 (423)
T ss_pred -------cc----------cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCce
Confidence 33 4789999921 22344555544 68999999873 3
Q ss_pred EEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCC
Q 004255 205 VAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (765)
Q Consensus 205 LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~ 282 (765)
..++.|.+|+.||+.++++.-++.+... ...++.+| ++||
T Consensus 275 yS~SwDHTIk~WDletg~~~~~~~~~ks--------------l~~i~~~~~~~Ll~------------------------ 316 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKSTLTTNKS--------------LNCISYSPLSKLLA------------------------ 316 (423)
T ss_pred EeecccceEEEEEeecccceeeeecCcc--------------eeEeecccccceee------------------------
Confidence 3456778999999999998887765322 22333332 2222
Q ss_pred CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc--
Q 004255 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-- 360 (765)
Q Consensus 283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~-- 360 (765)
.++.|..++|||-+++.
T Consensus 317 -------------------------------------------------------------~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 317 -------------------------------------------------------------SGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred -------------------------------------------------------------ecCCCCceeecCCCCCCCc
Confidence 23456678888877653
Q ss_pred -EEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 004255 361 -IISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC 438 (765)
Q Consensus 361 -~i~~~~aH~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~sla 438 (765)
+..+|.+|++.|.++.++|... +|+++|.|+ ++++||++.. . ..||.+.+ +...|.++.
T Consensus 336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~-t~klWDvRS~-----k-----------~plydI~~--h~DKvl~vd 396 (423)
T KOG0313|consen 336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN-TVKLWDVRST-----K-----------APLYDIAG--HNDKVLSVD 396 (423)
T ss_pred eeEEeeecchhhhhheecCCCCceEEEEEecCC-eEEEEEeccC-----C-----------Ccceeecc--CCceEEEEe
Confidence 5667999999999999999655 578888865 5999999652 1 37899975 356799999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 439 FSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 439 FSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
|+ ++..|++|+.|.+++||.-.+.
T Consensus 397 W~-~~~~IvSGGaD~~l~i~~~~~~ 420 (423)
T KOG0313|consen 397 WN-EGGLIVSGGADNKLRIFKGSPI 420 (423)
T ss_pred cc-CCceEEeccCcceEEEeccccc
Confidence 98 5679999999999999976543
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.58 E-value=1.9e-13 Score=161.04 Aligned_cols=249 Identities=16% Similarity=0.170 Sum_probs=172.8
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC------CCc-----------ceEeeeeccCCEEEEEEec
Q 004255 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED------ASN-----------FNELVSKRDGPVSFLQMQP 115 (765)
Q Consensus 54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~------~g~-----------~~ells~~dg~V~~v~~lP 115 (765)
++...|.+++|-. +++.|+.|+++. +.||.-.. -+. +..++.+|++.|..+.+.|
T Consensus 67 ~h~~sv~CVR~S~-------dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 67 DHDGSVNCVRFSP-------DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred cccCceeEEEECC-------CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 3555677888754 588999999998 79999862 111 4567888999999999998
Q ss_pred CCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CC
Q 004255 116 FPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SS 194 (765)
Q Consensus 116 ~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~ 194 (765)
+ ++ +||.++. +++|.|||.++.+.+..++.| +.
T Consensus 140 ~-----------~~--~lvS~s~---------------------------------DnsViiwn~~tF~~~~vl~~H~s~ 173 (942)
T KOG0973|consen 140 D-----------DS--LLVSVSL---------------------------------DNSVIIWNAKTFELLKVLRGHQSL 173 (942)
T ss_pred C-----------cc--EEEEecc---------------------------------cceEEEEccccceeeeeeeccccc
Confidence 5 23 6765432 469999999999999999865 68
Q ss_pred EEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCC
Q 004255 195 VCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNS 269 (765)
Q Consensus 195 V~sV~~s~--~~LaV~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~ 269 (765)
|..|.+.| +++|+- .|..|++|+..+....+++..+-.. +++.. -+..+.+|| .+||.+.
T Consensus 174 VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~---~~~~T----~f~RlSWSPDG~~las~n-------- 238 (942)
T KOG0973|consen 174 VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE---SPLTT----FFLRLSWSPDGHHLASPN-------- 238 (942)
T ss_pred ccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh---CCCcc----eeeecccCCCcCeecchh--------
Confidence 99999998 899985 4557999998887676766542210 00000 011122222 2222211
Q ss_pred ccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCC
Q 004255 270 GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG 349 (765)
Q Consensus 270 G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG 349 (765)
+.-...-
T Consensus 239 -------------------------------------------------------------------------A~n~~~~ 245 (942)
T KOG0973|consen 239 -------------------------------------------------------------------------AVNGGKS 245 (942)
T ss_pred -------------------------------------------------------------------------hccCCcc
Confidence 0001122
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECC--------CC-----C----EEEEEEcCCCEEEEEeCCCCcccCCCCCCc
Q 004255 350 IVVVKDFVTRAIISQFKAHTSPISALCFDP--------SG-----T----LLVTASVYGNNINIFRIMPSCMRSGSGNHK 412 (765)
Q Consensus 350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp--------dG-----~----lLATaS~dGt~IrVWdi~~~~~~~~sG~~~ 412 (765)
++.|.+-.+-+.-..|-+|.+|+.+++|+| +| + .+|+||.|+ .|-||....
T Consensus 246 ~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr-SlSVW~T~~----------- 313 (942)
T KOG0973|consen 246 TIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR-SLSVWNTAL----------- 313 (942)
T ss_pred eeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc-cEEEEecCC-----------
Confidence 566666666677778999999999999998 12 1 578888865 599999732
Q ss_pred cccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 413 ~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
.++++..+. ..+..|.+++|||||.-|.++|.||||.++..+.
T Consensus 314 ------~RPl~vi~~-lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 314 ------PRPLFVIHN-LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred ------CCchhhhhh-hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 134443321 2235699999999999999999999999998864
No 74
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.58 E-value=1.8e-13 Score=145.84 Aligned_cols=264 Identities=14% Similarity=0.121 Sum_probs=165.8
Q ss_pred CeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEE-EecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQ-MQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 75 ~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~-~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
+.+|..+|++-.+|||. .|++..++.+|.++++.+. +.+++. ..++++ ++
T Consensus 116 ~~IltgsYDg~~riWd~--~Gk~~~~~~Ght~~ik~v~~v~~n~~-----------~~~fvs-as--------------- 166 (423)
T KOG0313|consen 116 KWILTGSYDGTSRIWDL--KGKSIKTIVGHTGPIKSVAWVIKNSS-----------SCLFVS-AS--------------- 166 (423)
T ss_pred ceEEEeecCCeeEEEec--CCceEEEEecCCcceeeeEEEecCCc-----------cceEEE-ec---------------
Confidence 56666667777999998 5899999999999999554 444432 123433 21
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE----eC-CCCEEEEEecC--CeEEE-EeCCeEEEEECCCCceeE
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL----RF-RSSVCMVRCSP--RIVAV-GLATQIYCFDALTLENKF 225 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL----~~-~s~V~sV~~s~--~~LaV-~~~~~I~iwD~~t~~~l~ 225 (765)
.++++++|-.+.++.+-.. +. ...|-+|+.++ .+++. +.|..|.||+.. .+..-
T Consensus 167 -----------------~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~-~~~~~ 228 (423)
T KOG0313|consen 167 -----------------MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVE-TDEED 228 (423)
T ss_pred -----------------CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccC-CCccc
Confidence 2479999999888754333 13 35888998766 44554 456789999932 22223
Q ss_pred EEEecCCcccCCCCccccccccceeEEccceEEEec-CCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhh
Q 004255 226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYAS-NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ 304 (765)
Q Consensus 226 tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas-~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~ 304 (765)
++....+.....+ .. --.++ ..|++
T Consensus 229 ~~E~~s~~rrk~~-----------~~-----~~~~~~r~P~v-------------------------------------- 254 (423)
T KOG0313|consen 229 ELESSSNRRRKKQ-----------KR-----EKEGGTRTPLV-------------------------------------- 254 (423)
T ss_pred cccccchhhhhhh-----------hh-----hhcccccCceE--------------------------------------
Confidence 3332222100000 00 00000 00000
Q ss_pred hhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEE
Q 004255 305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLL 384 (765)
Q Consensus 305 la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lL 384 (765)
+|.+|... ++++.+.+ ...+.+++.|.+|++||+.++..+.++.+. .+++++..+|...+|
T Consensus 255 -------tl~GHt~~------Vs~V~w~d-----~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll 315 (423)
T KOG0313|consen 255 -------TLEGHTEP------VSSVVWSD-----ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLL 315 (423)
T ss_pred -------Eecccccc------eeeEEEcC-----CCceEeecccceEEEEEeecccceeeeecC-cceeEeeccccccee
Confidence 11111110 00000000 001235678999999999999998888765 579999999999999
Q ss_pred EEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEEeCCCcEEEEeCCCC
Q 004255 385 VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 385 ATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~Las~S~dgTVhIwdl~~~ 463 (765)
|+||.| ..|||||-+.. +|. ...+.| -|+. ..|.++.|+|... .|+++|.|+|+++||+...
T Consensus 316 ~~gssd-r~irl~DPR~~-----~gs---------~v~~s~-~gH~-nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 316 ASGSSD-RHIRLWDPRTG-----DGS---------VVSQSL-IGHK-NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred eecCCC-CceeecCCCCC-----CCc---------eeEEee-ecch-hhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 999995 56999997541 221 233444 3654 4899999999875 5899999999999999887
Q ss_pred CC-CcccccccCC
Q 004255 464 GG-DSGFQTLSSQ 475 (765)
Q Consensus 464 gg-~~~~~~h~~~ 475 (765)
.+ ..++.+|+.+
T Consensus 379 k~plydI~~h~DK 391 (423)
T KOG0313|consen 379 KAPLYDIAGHNDK 391 (423)
T ss_pred CCcceeeccCCce
Confidence 74 4577888644
No 75
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.58 E-value=1.3e-14 Score=155.64 Aligned_cols=231 Identities=12% Similarity=0.113 Sum_probs=162.9
Q ss_pred eEEEEEecCc-EEEEEccCCC-cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 76 QVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 76 ~vL~~G~~~G-~qVWdv~~~g-~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
..|+.|..+. |++|++.... ++..+|.+..|++..+.+-+. .+..||. +
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~------------~~~~iAa--s--------------- 238 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD------------NKHVIAA--S--------------- 238 (459)
T ss_pred chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC------------CceEEee--c---------------
Confidence 3677776664 9999995322 255667777889999998752 3345543 1
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCC--eEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~--~LaV~~-~~~I~iwD~~t~~~l~tl~t 229 (765)
.++.+++|++...+..++|..| ..|+++.|... .++.+. +.+|++||+....|..++.-
T Consensus 239 -----------------~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~ 301 (459)
T KOG0288|consen 239 -----------------NDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP 301 (459)
T ss_pred -----------------CCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc
Confidence 1368999999999999999976 59999998762 244443 45799999988766555431
Q ss_pred cCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccc
Q 004255 230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (765)
Q Consensus 230 ~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~ 309 (765)
-.. + .-+.+ ...
T Consensus 302 ~S~----------c----nDI~~-------~~~----------------------------------------------- 313 (459)
T KOG0288|consen 302 GSQ----------C----NDIVC-------SIS----------------------------------------------- 313 (459)
T ss_pred ccc----------c----cceEe-------cce-----------------------------------------------
Confidence 000 0 00000 000
Q ss_pred ceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 004255 310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV 389 (765)
Q Consensus 310 ~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~ 389 (765)
...++..|+.|+.||+.+..+......|. .|++|..+++|..|.+++.
T Consensus 314 -------------------------------~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR 361 (459)
T KOG0288|consen 314 -------------------------------DVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR 361 (459)
T ss_pred -------------------------------eeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC
Confidence 01134568899999999999999998885 9999999999999999999
Q ss_pred CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc-ccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcc
Q 004255 390 YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI-TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 468 (765)
Q Consensus 390 dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~-~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~ 468 (765)
|++ ++|+|+++. . ..+.|... |. .....+.+.||||+.|+|+||.||.|+||++...+.+-.
T Consensus 362 Ddt-l~viDlRt~------e---------I~~~~sA~-g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~ 424 (459)
T KOG0288|consen 362 DDT-LKVIDLRTK------E---------IRQTFSAE-GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV 424 (459)
T ss_pred CCc-eeeeecccc------c---------EEEEeecc-ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE
Confidence 765 999999653 1 12333322 21 223578899999999999999999999999987665543
Q ss_pred c
Q 004255 469 F 469 (765)
Q Consensus 469 ~ 469 (765)
+
T Consensus 425 l 425 (459)
T KOG0288|consen 425 L 425 (459)
T ss_pred e
Confidence 3
No 76
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.58 E-value=2.1e-13 Score=141.92 Aligned_cols=255 Identities=18% Similarity=0.175 Sum_probs=167.5
Q ss_pred Ccceeeeccccccccceeccc-CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCE
Q 004255 30 ASTVASTVRSAGASVAASISN-ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPV 108 (765)
Q Consensus 30 ~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V 108 (765)
|++=..+||--....+|.... .-..+...|+.+.|.. |+ .+|++.|.++..++||+. ++ ....+..|+++|
T Consensus 45 A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd----dg--skVf~g~~Dk~~k~wDL~-S~-Q~~~v~~Hd~pv 116 (347)
T KOG0647|consen 45 AGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD----DG--SKVFSGGCDKQAKLWDLA-SG-QVSQVAAHDAPV 116 (347)
T ss_pred ecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc----CC--ceEEeeccCCceEEEEcc-CC-Ceeeeeecccce
Confidence 444555666553333333322 1234566788777755 32 456666666679999995 45 446688999999
Q ss_pred EEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEE
Q 004255 109 SFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHV 188 (765)
Q Consensus 109 ~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~t 188 (765)
+.+.+.+.+. .++|+. |+|| +||++||++....+.+
T Consensus 117 kt~~wv~~~~-----------~~cl~T-----------------------GSWD----------KTlKfWD~R~~~pv~t 152 (347)
T KOG0647|consen 117 KTCHWVPGMN-----------YQCLVT-----------------------GSWD----------KTLKFWDTRSSNPVAT 152 (347)
T ss_pred eEEEEecCCC-----------cceeEe-----------------------cccc----------cceeecccCCCCeeee
Confidence 9999997532 235532 4565 6999999999999999
Q ss_pred EeCCCCEEEEEecCCeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceec
Q 004255 189 LRFRSSVCMVRCSPRIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLS 267 (765)
Q Consensus 189 L~~~s~V~sV~~s~~~LaV~~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~ 267 (765)
+..+.+||++.+-..+++|++.+ .|.+|++++....+.....|.. +-.|-+|...+....
T Consensus 153 ~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk------------------~Q~R~va~f~d~~~~- 213 (347)
T KOG0647|consen 153 LQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLK------------------WQTRCVACFQDKDGF- 213 (347)
T ss_pred eeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCccc------------------ceeeEEEEEecCCce-
Confidence 99999999999988888888766 5999999876544433333321 111334433221000
Q ss_pred CCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCC
Q 004255 268 NSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDN 347 (765)
Q Consensus 268 ~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~ 347 (765)
+-++.
T Consensus 214 ---------------------------------------------------------------------------alGsi 218 (347)
T KOG0647|consen 214 ---------------------------------------------------------------------------ALGSI 218 (347)
T ss_pred ---------------------------------------------------------------------------Eeeee
Confidence 01123
Q ss_pred CCeEEEEECCCC--cEEEEeccCCC---------CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccC
Q 004255 348 AGIVVVKDFVTR--AIISQFKAHTS---------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 416 (765)
Q Consensus 348 dG~V~IwDl~s~--~~i~~~~aH~~---------~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~ 416 (765)
.|.|-|..+..+ +.-.+|++|.. +|+.|+|+|.-..|||++.||+ +..||-.. .
T Consensus 219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FWDkda-------r------- 283 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFWDKDA-------R------- 283 (347)
T ss_pred cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEecchh-------h-------
Confidence 455555555544 33445667752 5788999999889999999886 99999632 1
Q ss_pred CcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 004255 417 SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (765)
Q Consensus 417 ~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S 450 (765)
.+|.... .+...|++++|+.+|.++|-+.
T Consensus 284 ---~kLk~s~--~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 284 ---TKLKTSE--THPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ---hhhhccC--cCCCccceeEecCCCCEEEEEe
Confidence 2343322 2456899999999999887653
No 77
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.58 E-value=2.5e-13 Score=139.26 Aligned_cols=212 Identities=14% Similarity=0.129 Sum_probs=155.4
Q ss_pred eeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEE
Q 004255 100 LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYS 179 (765)
Q Consensus 100 lls~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWd 179 (765)
++.+|+-|+..|++.- ...||..++- +.+..+|-
T Consensus 5 ~l~GHERplTqiKyN~-------------eGDLlFscaK---------------------------------D~~~~vw~ 38 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNR-------------EGDLLFSCAK---------------------------------DSTPTVWY 38 (327)
T ss_pred ccccCccccceEEecC-------------CCcEEEEecC---------------------------------CCCceEEE
Confidence 4667888999999873 3458765432 34778999
Q ss_pred CCCCeEEEEEeCC-CCEEEEEecC--CeEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-
Q 004255 180 FQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP- 254 (765)
Q Consensus 180 lktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp- 254 (765)
..+|+.+.+++.| +.|+++..+. +.|+.|.+ ..+++||+.+++++.++.+... +..+.|+.
T Consensus 39 s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~--------------Vk~~~F~~~ 104 (327)
T KOG0643|consen 39 SLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSP--------------VKRVDFSFG 104 (327)
T ss_pred ecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCe--------------eEEEeeccC
Confidence 9899999999976 6899888765 67777654 5699999999999999875221 12333432
Q ss_pred -ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCC
Q 004255 255 -RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS 333 (765)
Q Consensus 255 -r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~ 333 (765)
.++.+..++
T Consensus 105 gn~~l~~tD~---------------------------------------------------------------------- 114 (327)
T KOG0643|consen 105 GNLILASTDK---------------------------------------------------------------------- 114 (327)
T ss_pred CcEEEEEehh----------------------------------------------------------------------
Confidence 333332221
Q ss_pred ccccccccccccCCCCeEEEEECC-------CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC
Q 004255 334 VWKVGRHAGADMDNAGIVVVKDFV-------TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 406 (765)
Q Consensus 334 ~~~~~~~~~~~~~~dG~V~IwDl~-------s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~ 406 (765)
..++.+.|.++|++ +.++...+..+.+.|+.+-|+|-|..|++|-++|. |++||++.
T Consensus 115 ----------~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~-is~~da~~----- 178 (327)
T KOG0643|consen 115 ----------QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS-ISIYDART----- 178 (327)
T ss_pred ----------hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc-EEEEEccc-----
Confidence 11244567777776 45678888899999999999999999999999876 99999976
Q ss_pred CCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccc
Q 004255 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 470 (765)
Q Consensus 407 ~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~ 470 (765)
| ..+.+-.+ .+...|.+|.||+|..+++++|.|.|.++||+.+.....++.
T Consensus 179 --g----------~~~v~s~~-~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 179 --G----------KELVDSDE-EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred --C----------ceeeechh-hhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 3 23333222 234579999999999999999999999999998865544433
No 78
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.7e-13 Score=148.85 Aligned_cols=249 Identities=15% Similarity=0.235 Sum_probs=164.7
Q ss_pred CCCcEEEEEEeeccCCC---CCCCe-EEEEEecCc-EEEEEccCCCcceEee---eeccCCEEEEEEecCCCCCCCCCCc
Q 004255 55 LKDQVTWAGFDRLEYGP---SVFKQ-VLLLGYQNG-FQVLDVEDASNFNELV---SKRDGPVSFLQMQPFPVKDDGCEGF 126 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~---~~~~~-vL~~G~~~G-~qVWdv~~~g~~~ell---s~~dg~V~~v~~lP~p~~~~~~d~f 126 (765)
-+..|+-+.|.++++.- ...++ +++++...- +.+||++. .++.++- ...+..++.-+++|+
T Consensus 246 ~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~-ak~~k~~~~~g~e~~~~e~FeVShd---------- 314 (514)
T KOG2055|consen 246 VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET-AKVTKLKPPYGVEEKSMERFEVSHD---------- 314 (514)
T ss_pred cChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc-cccccccCCCCcccchhheeEecCC----------
Confidence 34466667776654431 11233 666666655 79999964 4444331 111223445555543
Q ss_pred cccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC---C
Q 004255 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---R 203 (765)
Q Consensus 127 ~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~---~ 203 (765)
.++||+.+. -+-|.|-..+|++.+.+++..+.|.++.|+. .
T Consensus 315 ---~~fia~~G~---------------------------------~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 315 ---SNFIAIAGN---------------------------------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKE 358 (514)
T ss_pred ---CCeEEEccc---------------------------------CceEEeehhhhhhhhheeeeccEEeeEEEecCCcE
Confidence 247766321 1579999999999999999999999999875 5
Q ss_pred eEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCC
Q 004255 204 IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSG 281 (765)
Q Consensus 204 ~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~ 281 (765)
+++++.+++|++||+.+..++++....-. +....++++. +|||.+++
T Consensus 359 l~~~~~~GeV~v~nl~~~~~~~rf~D~G~------------v~gts~~~S~ng~ylA~GS~------------------- 407 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQNSCLHRFVDDGS------------VHGTSLCISLNGSYLATGSD------------------- 407 (514)
T ss_pred EEEEcCCceEEEEecCCcceEEEEeecCc------------cceeeeeecCCCceEEeccC-------------------
Confidence 67777788999999999988888764221 0112344333 56666553
Q ss_pred CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC----
Q 004255 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV---- 357 (765)
Q Consensus 282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~---- 357 (765)
.|.|.|||..
T Consensus 408 ------------------------------------------------------------------~GiVNIYd~~s~~~ 421 (514)
T KOG2055|consen 408 ------------------------------------------------------------------SGIVNIYDGNSCFA 421 (514)
T ss_pred ------------------------------------------------------------------cceEEEeccchhhc
Confidence 3455555533
Q ss_pred --CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccE
Q 004255 358 --TRAIISQFKAHTSPISALCFDPSGTLLVTASVY-GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATI 434 (765)
Q Consensus 358 --s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d-Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I 434 (765)
+.+++..+..-+..|+.|+|+||+++||.||.. ...+|+--+ |. .+...+|... +..-..|
T Consensus 422 s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv-PS------~TVFsNfP~~---------n~~vg~v 485 (514)
T KOG2055|consen 422 STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV-PS------CTVFSNFPTS---------NTKVGHV 485 (514)
T ss_pred cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec-cc------eeeeccCCCC---------CCcccce
Confidence 245677777778899999999999999999862 234777666 21 2222223221 1122358
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 435 QDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 435 ~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
+|++|||.|.+||.|..+|.++||.|..|
T Consensus 486 tc~aFSP~sG~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 486 TCMAFSPNSGYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred EEEEecCCCceEEeecCCCceeeEeeccC
Confidence 99999999999999999999999999754
No 79
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.2e-12 Score=137.02 Aligned_cols=261 Identities=20% Similarity=0.168 Sum_probs=151.8
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeecc----CCEEEEEEecCCCCCCCCCCcc
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRD----GPVSFLQMQPFPVKDDGCEGFR 127 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~d----g~V~~v~~lP~p~~~~~~d~f~ 127 (765)
-+|++.|..+.|-. +++.|++...++ |+||++.+-. .++--+.|. +--..|.|.|+.
T Consensus 83 KgH~~~vt~~~FsS-------dGK~lat~~~Dr~Ir~w~~~DF~-~~eHr~~R~nve~dhpT~V~FapDc---------- 144 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSS-------DGKKLATISGDRSIRLWDVRDFE-NKEHRCIRQNVEYDHPTRVVFAPDC---------- 144 (420)
T ss_pred hccCCceeeeEEcC-------CCceeEEEeCCceEEEEecchhh-hhhhhHhhccccCCCceEEEECCCc----------
Confidence 35677788887743 477888888886 9999996521 111111110 122344555542
Q ss_pred ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC---CeEEE------EEeCCC----C
Q 004255 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS---HCYEH------VLRFRS----S 194 (765)
Q Consensus 128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlkt---g~~v~------tL~~~s----~ 194 (765)
+-+++. +. ...++++|-+.. |..-+ .+.|+. .
T Consensus 145 --~s~vv~-~~--------------------------------~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~ 189 (420)
T KOG2096|consen 145 --KSVVVS-VK--------------------------------RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVD 189 (420)
T ss_pred --ceEEEE-Ec--------------------------------cCCEEEEEEeeecccCCCCcccccccccccchhcccc
Confidence 112221 11 124788886643 22221 122331 3
Q ss_pred EEE--EEecCCeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCC
Q 004255 195 VCM--VRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNS 269 (765)
Q Consensus 195 V~s--V~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~ 269 (765)
|.+ ++-+.++|+.+. +..|.|||+. |+++.++.+.... ..-.|+|| |+||.++-.+-
T Consensus 190 ~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~-------------n~~aavSP~GRFia~~gFTpD---- 251 (420)
T KOG2096|consen 190 IINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS-------------NYDAAVSPDGRFIAVSGFTPD---- 251 (420)
T ss_pred eEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc-------------ccceeeCCCCcEEEEecCCCC----
Confidence 433 344557888765 5579999998 9999999875541 23478888 89988864310
Q ss_pred ccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCC
Q 004255 270 GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG 349 (765)
Q Consensus 270 G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG 349 (765)
...|+. --..||
T Consensus 252 -VkVwE~-------------------------------------------------------------------~f~kdG 263 (420)
T KOG2096|consen 252 -VKVWEP-------------------------------------------------------------------IFTKDG 263 (420)
T ss_pred -ceEEEE-------------------------------------------------------------------EeccCc
Confidence 000000 001233
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC--------C------CCC-----
Q 004255 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS--------G------SGN----- 410 (765)
Q Consensus 350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~--------~------sG~----- 410 (765)
+++ .-..+.+|++|.+.|.++|||++.+.++|+|.||+ +||||+.-.+... + .|.
T Consensus 264 ~fq-----ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL 337 (420)
T KOG2096|consen 264 TFQ-----EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRL 337 (420)
T ss_pred chh-----hhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeeccceEecCCCchHhhcCCcchhhcCCCceEE
Confidence 321 22345678999999999999999999999999886 9999985321100 0 000
Q ss_pred ---Cc----cccCCcceEEEEEeccc--------ccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255 411 ---HK----YDWNSSHVHLYKLHRGI--------TSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (765)
Q Consensus 411 ---~~----~~~~~s~~~l~~l~rG~--------~~a~I~slaFSpDg~~Las~S~dgTVhIwd 459 (765)
.. .....+..+++.-++|. +...|.+|+|++||+++|+++++ .++|+.
T Consensus 338 ~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr-~vrv~~ 400 (420)
T KOG2096|consen 338 ELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR-YVRVIR 400 (420)
T ss_pred EeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce-eeeeec
Confidence 00 00011123444434442 23359999999999999998754 577765
No 80
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.54 E-value=5.1e-13 Score=144.27 Aligned_cols=226 Identities=15% Similarity=0.197 Sum_probs=160.0
Q ss_pred eEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCC
Q 004255 76 QVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (765)
Q Consensus 76 ~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~ 154 (765)
..+++|..+ ..-++|. +.+....++.+|.-.|..+.+.|+ +.++...
T Consensus 232 ~~ilTGG~d~~av~~d~-~s~q~l~~~~Gh~kki~~v~~~~~---------------~~~v~~a---------------- 279 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDK-PSNQILATLKGHTKKITSVKFHKD---------------LDTVITA---------------- 279 (506)
T ss_pred CcceecCCCCceEEEec-chhhhhhhccCcceEEEEEEeccc---------------hhheeec----------------
Confidence 456666666 7999998 457788899999989999988764 1122111
Q ss_pred CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEec
Q 004255 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTY 230 (765)
Q Consensus 155 ~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~ 230 (765)
..+..|++|+.-...+...++. ..+|..+...+ .+|+.+. ++.+.+.|..++.++......
T Consensus 280 ---------------Sad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~ 344 (506)
T KOG0289|consen 280 ---------------SADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE 344 (506)
T ss_pred ---------------CCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence 0235899999987776666654 46898888766 6666655 556777889998766554321
Q ss_pred CCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccc
Q 004255 231 PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS 310 (765)
Q Consensus 231 p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ 310 (765)
.+ .+.+.+.+|.|.-|-
T Consensus 345 ~s-----------~v~~ts~~fHpDgLi---------------------------------------------------- 361 (506)
T KOG0289|consen 345 TS-----------DVEYTSAAFHPDGLI---------------------------------------------------- 361 (506)
T ss_pred cc-----------cceeEEeeEcCCceE----------------------------------------------------
Confidence 11 112333333321111
Q ss_pred eeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC
Q 004255 311 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY 390 (765)
Q Consensus 311 ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d 390 (765)
.+.+..||.|+|||+.++..+..|.+|+++|.+++|+.+|-+|||+.+|
T Consensus 362 -------------------------------fgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add 410 (506)
T KOG0289|consen 362 -------------------------------FGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADD 410 (506)
T ss_pred -------------------------------EeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecC
Confidence 1234568999999999999999999999999999999999999999997
Q ss_pred CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 391 Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
|. |++||++... . -+.+.+. ....|.+++|.+.|++|++++.|=+|++++-.
T Consensus 411 ~~-V~lwDLRKl~-----n----------~kt~~l~---~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~ 462 (506)
T KOG0289|consen 411 GS-VKLWDLRKLK-----N----------FKTIQLD---EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKK 462 (506)
T ss_pred Ce-EEEEEehhhc-----c----------cceeecc---ccccceeEEEcCCCCeEEeecceeEEEEEecc
Confidence 75 9999996420 0 1222332 12258899999999999999988888888743
No 81
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=3e-13 Score=137.89 Aligned_cols=250 Identities=13% Similarity=0.109 Sum_probs=168.6
Q ss_pred CCCCCCcEEEEEEeeccC------CCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCC
Q 004255 52 SEDLKDQVTWAGFDRLEY------GPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEG 125 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~------~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~ 125 (765)
..+.+.-.....||.-+. ..+...++++...++.+||||+.........+..|...|..+.+.+.
T Consensus 45 ~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~--------- 115 (311)
T KOG0277|consen 45 VTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV--------- 115 (311)
T ss_pred cCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc---------
Confidence 335666677778875221 12222444444445559999997777777788888888999887752
Q ss_pred ccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--
Q 004255 126 FRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-- 202 (765)
Q Consensus 126 f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~-- 202 (765)
.|..+++ + +| ++||+|||...++-+++++.+ +.|+...++|
T Consensus 116 ---~r~~~lt-s----------------------SW----------D~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 116 ---RRRIFLT-S----------------------SW----------DGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHI 159 (311)
T ss_pred ---cceeEEe-e----------------------cc----------CCceEeecCCCCcceEeecCCccEEEEEecCCCC
Confidence 1223322 1 34 379999999999999999875 5899999998
Q ss_pred -CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCC
Q 004255 203 -RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (765)
Q Consensus 203 -~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~ 280 (765)
++++.+. ++..++||++..-....|..|... +++..|
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~E-----------------il~cdw------------------------ 198 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSE-----------------ILCCDW------------------------ 198 (311)
T ss_pred CCeEEEccCCceEEEEEecCCCceeEEEeccce-----------------eEeecc------------------------
Confidence 6777654 567999998754333334333220 111111
Q ss_pred CCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 004255 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (765)
Q Consensus 281 ~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~ 360 (765)
++|- ...+++++.|+.|++||+++.+
T Consensus 199 ---------------------------------~ky~---------------------~~vl~Tg~vd~~vr~wDir~~r 224 (311)
T KOG0277|consen 199 ---------------------------------SKYN---------------------HNVLATGGVDNLVRGWDIRNLR 224 (311)
T ss_pred ---------------------------------cccC---------------------CcEEEecCCCceEEEEehhhcc
Confidence 1110 1123466789999999998854
Q ss_pred -EEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 004255 361 -IISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC 438 (765)
Q Consensus 361 -~i~~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~sla 438 (765)
++..|.+|.-.|..++|||. ..+|||||-| -++||||.+.. .+ ....++ +|..-+..+.
T Consensus 225 ~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD-mT~riw~~~~~-----ds---------~~e~~~----~HtEFv~g~D 285 (311)
T KOG0277|consen 225 TPLFELNGHGLAVRKVKFSPHHASLLASASYD-MTVRIWDPERQ-----DS---------AIETVD----HHTEFVCGLD 285 (311)
T ss_pred ccceeecCCceEEEEEecCcchhhHhhhcccc-ceEEecccccc-----hh---------hhhhhh----ccceEEeccc
Confidence 68889999999999999995 6689999995 56999998631 01 012222 1223467788
Q ss_pred Ecc-CCCEEEEEeCCCcEEEEeC
Q 004255 439 FSH-YSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 439 FSp-Dg~~Las~S~dgTVhIwdl 460 (765)
||+ +..++|+++-|+++.||+-
T Consensus 286 ws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 286 WSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccccCceeeecccccceeeecc
Confidence 885 5689999999999999973
No 82
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.53 E-value=5.2e-13 Score=146.56 Aligned_cols=112 Identities=16% Similarity=0.237 Sum_probs=84.2
Q ss_pred cccCCCCeEEEEECCCCc-EEEEec-----cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccC
Q 004255 343 ADMDNAGIVVVKDFVTRA-IISQFK-----AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 416 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~~-~i~~~~-----aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~ 416 (765)
.+++.||+++|||+...+ ....|+ +-.-+++.++|+|||+++|+|..||. |.+||.... .
T Consensus 285 lT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~------~------- 350 (641)
T KOG0772|consen 285 LTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSR------T------- 350 (641)
T ss_pred EEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-eeeeecCCc------c-------
Confidence 467899999999997643 223332 33558899999999999999999876 999997321 1
Q ss_pred CcceEEEEEeccccc-ccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccc
Q 004255 417 SSHVHLYKLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 470 (765)
Q Consensus 417 ~s~~~l~~l~rG~~~-a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~ 470 (765)
.+..+..+..|.. ..|+||+||+||++|++-+.|++++||||..+..+...+
T Consensus 351 --v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 351 --VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred --cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhh
Confidence 1233444333332 269999999999999999999999999999987765433
No 83
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.8e-12 Score=150.39 Aligned_cols=239 Identities=15% Similarity=0.169 Sum_probs=164.0
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
..|++..+=+.||. + +..|+++..+| +++|+.....+.-+++..+...|.+++.- +.
T Consensus 10 yaht~G~t~i~~d~----~---gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~-------------s~-- 67 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP----D---GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY-------------SN-- 67 (933)
T ss_pred hhccCceEEEEEcC----C---CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec-------------cc--
Confidence 34566655555654 2 33555555555 99999965435566666666777777653 12
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE---EEEEeCCCCEEEEEecCCeEEEE
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY---EHVLRFRSSVCMVRCSPRIVAVG 208 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~---v~tL~~~s~V~sV~~s~~~LaV~ 208 (765)
.+++ +. .+++|.+|.+-.++. +..+.++-.++++.-+++.+|.|
T Consensus 68 ~f~~-~s--------------------------------~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaag 114 (933)
T KOG1274|consen 68 HFLT-GS--------------------------------EQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAG 114 (933)
T ss_pred ceEE-ee--------------------------------ccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEee
Confidence 3333 21 236999999887764 44444544555555556788887
Q ss_pred eCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCC
Q 004255 209 LAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (765)
Q Consensus 209 ~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s 285 (765)
.++ .|+|-++.+....+.+++|..| +..+.+.| .+||.
T Consensus 115 sdD~~vK~~~~~D~s~~~~lrgh~ap-------------Vl~l~~~p~~~fLAv-------------------------- 155 (933)
T KOG1274|consen 115 SDDTAVKLLNLDDSSQEKVLRGHDAP-------------VLQLSYDPKGNFLAV-------------------------- 155 (933)
T ss_pred cCceeEEEEeccccchheeecccCCc-------------eeeeeEcCCCCEEEE--------------------------
Confidence 766 5999999998888888887764 12234433 22222
Q ss_pred cCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 004255 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (765)
Q Consensus 286 ~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~ 365 (765)
...||.|+|||+.++.+..++
T Consensus 156 -----------------------------------------------------------ss~dG~v~iw~~~~~~~~~tl 176 (933)
T KOG1274|consen 156 -----------------------------------------------------------SSCDGKVQIWDLQDGILSKTL 176 (933)
T ss_pred -----------------------------------------------------------EecCceEEEEEcccchhhhhc
Confidence 245889999999988776665
Q ss_pred cc-------C-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEE
Q 004255 366 KA-------H-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDI 437 (765)
Q Consensus 366 ~a-------H-~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~sl 437 (765)
.+ - ...+..++|+|+|..||..+.|+ .|++|+... . .++++|+-......+.++
T Consensus 177 ~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-~Vkvy~r~~-------w----------e~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 177 TGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-TVKVYSRKG-------W----------ELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred ccCCccccccccceeeeeeecCCCCeEEeeccCC-eEEEEccCC-------c----------eeheeecccccccceEEE
Confidence 43 1 45677899999966666666645 599999753 2 477888644444469999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 438 CFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 438 aFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
+|||.|+|||+++.||-|-|||+++
T Consensus 239 ~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 239 QWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEcCCCcEEeeeccCCcEEEEeccc
Confidence 9999999999999999999999984
No 84
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=6.4e-12 Score=126.19 Aligned_cols=254 Identities=14% Similarity=0.119 Sum_probs=172.9
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcc-----eEeeeeccCCEEEEEEecCCCCCCCCCCc
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF-----NELVSKRDGPVSFLQMQPFPVKDDGCEGF 126 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~-----~ells~~dg~V~~v~~lP~p~~~~~~d~f 126 (765)
--+|..|.+..|-.| +.+|++|.++- |++.-.+. +.+ .--++-|||.|+.++|+-+|..
T Consensus 86 khhkgsiyc~~ws~~-------geliatgsndk~ik~l~fn~-dt~~~~g~dle~nmhdgtirdl~fld~~~s------- 150 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPC-------GELIATGSNDKTIKVLPFNA-DTCNATGHDLEFNMHDGTIRDLAFLDDPES------- 150 (350)
T ss_pred cccCccEEEEEecCc-------cCeEEecCCCceEEEEeccc-ccccccCcceeeeecCCceeeeEEecCCCc-------
Confidence 346677777777553 67999999875 78876632 222 2236789999999999977632
Q ss_pred cccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEE-ecCCe
Q 004255 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVR-CSPRI 204 (765)
Q Consensus 127 ~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~-~s~~~ 204 (765)
..-+|+. ++ . -+++|.+=|-.+|+..+.+..+ +.|+++- +|.-.
T Consensus 151 --~~~il~s--~g----a--------------------------gdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m 196 (350)
T KOG0641|consen 151 --GGAILAS--AG----A--------------------------GDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAM 196 (350)
T ss_pred --CceEEEe--cC----C--------------------------CcceEEEeecCCCCcceeecCCcccEEEEEEecCcE
Confidence 2235544 21 0 1368888899999999999876 5788875 67777
Q ss_pred EEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccc-cccceeEEccceEEEecCCceecCCccccCCCCCCCCC
Q 004255 205 VAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN-VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (765)
Q Consensus 205 LaV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~-~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~ 282 (765)
++.|.. .+|++||++-..+..++...-.- . +.. ..+..+++.|
T Consensus 197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~------~-glessavaav~vdp---------------------------- 241 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHD------G-GLESSAVAAVAVDP---------------------------- 241 (350)
T ss_pred EEccCCCceEEEEeeeccceeeeccCcccC------C-CcccceeEEEEECC----------------------------
Confidence 777664 56999998876666665431110 0 000 0001111111
Q ss_pred CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE
Q 004255 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (765)
Q Consensus 283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i 362 (765)
.++ .++++..|....+||++.++.+
T Consensus 242 ---------------------------------------------------sgr----ll~sg~~dssc~lydirg~r~i 266 (350)
T KOG0641|consen 242 ---------------------------------------------------SGR----LLASGHADSSCMLYDIRGGRMI 266 (350)
T ss_pred ---------------------------------------------------Ccc----eeeeccCCCceEEEEeeCCcee
Confidence 011 0224556778899999999999
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (765)
Q Consensus 363 ~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD 442 (765)
..|..|+..|.|+.|||...+|+|+|- +..|+|=|++-. +. +.|-.+--+.+...+..+.|.|.
T Consensus 267 q~f~phsadir~vrfsp~a~yllt~sy-d~~ikltdlqgd------------la---~el~~~vv~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 267 QRFHPHSADIRCVRFSPGAHYLLTCSY-DMKIKLTDLQGD------------LA---HELPIMVVAEHKDKAIQCRWHPQ 330 (350)
T ss_pred eeeCCCccceeEEEeCCCceEEEEecc-cceEEEeecccc------------hh---hcCceEEEEeccCceEEEEecCc
Confidence 999999999999999999999999999 456999998521 00 11111112334455666899999
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 004255 443 SQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 443 g~~Las~S~dgTVhIwdl~ 461 (765)
.--+.++|.|.|+.+|.++
T Consensus 331 d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 DFSFISSSADKTATLWALN 349 (350)
T ss_pred cceeeeccCcceEEEeccC
Confidence 8888999999999999876
No 85
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.53 E-value=5.1e-12 Score=145.32 Aligned_cols=120 Identities=19% Similarity=0.261 Sum_probs=87.0
Q ss_pred cCCCCeEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc----CCCCCCcc----
Q 004255 345 MDNAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR----SGSGNHKY---- 413 (765)
Q Consensus 345 ~~~dG~V~IwDl~s~~~i~~~---~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~----~~sG~~~~---- 413 (765)
|...|+|-+|++++|-....| ++|..+|..|+.+--+++++||+.+|. ++.||....... -+.+.+..
T Consensus 466 G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi-lkfw~f~~k~l~~~l~l~~~~~~iv~hr 544 (910)
T KOG1539|consen 466 GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI-LKFWDFKKKVLKKSLRLGSSITGIVYHR 544 (910)
T ss_pred eccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce-EEEEecCCcceeeeeccCCCcceeeeee
Confidence 456799999999999998999 699999999999999999999999774 999998652100 00000000
Q ss_pred --c-----cCCcceEEEEE--------ecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255 414 --D-----WNSSHVHLYKL--------HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 414 --~-----~~~s~~~l~~l--------~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~ 466 (765)
+ .+.-...++.. .+|+ ...|++++|||||+||++++.|+||++||+.+....
T Consensus 545 ~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 545 VSDLLAIALDDFSIRVVDVVTRKVVREFWGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred hhhhhhhhcCceeEEEEEchhhhhhHHhhcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 0 00000112211 2454 357999999999999999999999999999875443
No 86
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.51 E-value=1.1e-12 Score=151.53 Aligned_cols=193 Identities=19% Similarity=0.177 Sum_probs=126.6
Q ss_pred CCCCcccCCcCCCCCCC---CCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC---CeEEE-EeCCeEEEEECCCCcee
Q 004255 152 HLGGVRDGMMDSQSGNC---VNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAV-GLATQIYCFDALTLENK 224 (765)
Q Consensus 152 ~~~~~r~g~~~~~~~~~---~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~---~~LaV-~~~~~I~iwD~~t~~~l 224 (765)
|.+.+=|=+|.. .++ ..+++|||||++...+|++.+.+++-|.+|+|+| ++++. ++|++|+||++..-+.
T Consensus 368 Ht~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V- 444 (712)
T KOG0283|consen 368 HTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV- 444 (712)
T ss_pred cchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCee-
Confidence 444555556642 112 2478999999999999999999999999999999 56665 5788999999876542
Q ss_pred EEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhh
Q 004255 225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ 304 (765)
Q Consensus 225 ~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~ 304 (765)
.......+. ...+ +|.. +
T Consensus 445 --v~W~Dl~~l-----------ITAv-------cy~P---------------------------d--------------- 462 (712)
T KOG0283|consen 445 --VDWNDLRDL-----------ITAV-------CYSP---------------------------D--------------- 462 (712)
T ss_pred --Eeehhhhhh-----------heeE-------Eecc---------------------------C---------------
Confidence 111111100 0111 1111 1
Q ss_pred hhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec---------cCCCCeEEE
Q 004255 305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK---------AHTSPISAL 375 (765)
Q Consensus 305 la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~---------aH~~~IsaL 375 (765)
++. ..-|..+|.+++|+....+.+..+. .|. .|+.+
T Consensus 463 ------------------------------Gk~----avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~ 507 (712)
T KOG0283|consen 463 ------------------------------GKG----AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGL 507 (712)
T ss_pred ------------------------------Cce----EEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeee
Confidence 000 1134567888888887776655443 133 79999
Q ss_pred EECCCCC--EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCCEEEEEeCC
Q 004255 376 CFDPSGT--LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSK 452 (765)
Q Consensus 376 aFSpdG~--lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a-~I~slaFSpDg~~Las~S~d 452 (765)
.|.|... +|+| |. |..|||||.... ..+.+|+ |..+. .-...+|+.||++|+++|+|
T Consensus 508 Q~~p~~~~~vLVT-Sn-DSrIRI~d~~~~-----------------~lv~KfK-G~~n~~SQ~~Asfs~Dgk~IVs~seD 567 (712)
T KOG0283|consen 508 QFFPGDPDEVLVT-SN-DSRIRIYDGRDK-----------------DLVHKFK-GFRNTSSQISASFSSDGKHIVSASED 567 (712)
T ss_pred EecCCCCCeEEEe-cC-CCceEEEeccch-----------------hhhhhhc-ccccCCcceeeeEccCCCEEEEeecC
Confidence 9997543 5655 55 345999998541 2334443 43332 33568999999999999999
Q ss_pred CcEEEEeCCCCC
Q 004255 453 GTCHVFVLSPFG 464 (765)
Q Consensus 453 gTVhIwdl~~~g 464 (765)
.-|+||++....
T Consensus 568 s~VYiW~~~~~~ 579 (712)
T KOG0283|consen 568 SWVYIWKNDSFN 579 (712)
T ss_pred ceEEEEeCCCCc
Confidence 999999986654
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.51 E-value=2.8e-12 Score=131.34 Aligned_cols=229 Identities=15% Similarity=0.214 Sum_probs=164.6
Q ss_pred eeccCCCCCCCeEEEEEec-CcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCC
Q 004255 65 DRLEYGPSVFKQVLLLGYQ-NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNT 143 (765)
Q Consensus 65 d~l~~~~~~~~~vL~~G~~-~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~ 143 (765)
|||.+.+.. ...|++.+. ..+++||+- .+++...+....+.+ .+.+.|.. ..+++..
T Consensus 68 dql~w~~~~-~d~~atas~dk~ir~wd~r-~~k~~~~i~~~~eni-~i~wsp~g-------------~~~~~~~------ 125 (313)
T KOG1407|consen 68 DQLCWDPKH-PDLFATASGDKTIRIWDIR-SGKCTARIETKGENI-NITWSPDG-------------EYIAVGN------ 125 (313)
T ss_pred hhheeCCCC-CcceEEecCCceEEEEEec-cCcEEEEeeccCcce-EEEEcCCC-------------CEEEEec------
Confidence 444444333 345555554 469999994 566665555555544 44567642 2555421
Q ss_pred CCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeE-EEEeCCeEEEEECCC
Q 004255 144 LAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIV-AVGLATQIYCFDALT 220 (765)
Q Consensus 144 ~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~L-aV~~~~~I~iwD~~t 220 (765)
.+..|.+.|.++.+.+++.+|.-.+..+.++- +++ +...-+.|.|..-..
T Consensus 126 ---------------------------kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps 178 (313)
T KOG1407|consen 126 ---------------------------KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS 178 (313)
T ss_pred ---------------------------CcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccc
Confidence 13479999999999999999988888777764 333 333336899988888
Q ss_pred CceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeeh
Q 004255 221 LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA 298 (765)
Q Consensus 221 ~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a 298 (765)
++.+++|..||.. --.+.|+| ||+|.++
T Consensus 179 Lkpv~si~AH~sn-------------CicI~f~p~GryfA~Gs------------------------------------- 208 (313)
T KOG1407|consen 179 LKPVQSIKAHPSN-------------CICIEFDPDGRYFATGS------------------------------------- 208 (313)
T ss_pred cccccccccCCcc-------------eEEEEECCCCceEeecc-------------------------------------
Confidence 9999999988862 13456666 6666654
Q ss_pred hhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEC
Q 004255 299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFD 378 (765)
Q Consensus 299 ~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFS 378 (765)
.|-.|-+||+...-++..|.-|.-||..|+||
T Consensus 209 ------------------------------------------------ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS 240 (313)
T KOG1407|consen 209 ------------------------------------------------ADALVSLWDVDELICERCISRLDWPVRTLSFS 240 (313)
T ss_pred ------------------------------------------------ccceeeccChhHhhhheeeccccCceEEEEec
Confidence 24467799999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC------
Q 004255 379 PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK------ 452 (765)
Q Consensus 379 pdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d------ 452 (765)
.||++||+||+ ++.|-|=++.+ | .++++.. ..+.-..++|+|....||-+.+|
T Consensus 241 ~dg~~lASaSE-Dh~IDIA~vet-------G----------d~~~eI~---~~~~t~tVAWHPk~~LLAyA~ddk~~d~~ 299 (313)
T KOG1407|consen 241 HDGRMLASASE-DHFIDIAEVET-------G----------DRVWEIP---CEGPTFTVAWHPKRPLLAYACDDKDGDSN 299 (313)
T ss_pred cCcceeeccCc-cceEEeEeccc-------C----------CeEEEee---ccCCceeEEecCCCceeeEEecCCCCccc
Confidence 99999999999 67787777765 5 4777775 34567889999999999988765
Q ss_pred ---CcEEEEeCC
Q 004255 453 ---GTCHVFVLS 461 (765)
Q Consensus 453 ---gTVhIwdl~ 461 (765)
|+++||-+.
T Consensus 300 reag~vKiFG~~ 311 (313)
T KOG1407|consen 300 REAGTVKIFGLS 311 (313)
T ss_pred cccceeEEecCC
Confidence 466666543
No 88
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.51 E-value=3.6e-13 Score=146.35 Aligned_cols=106 Identities=18% Similarity=0.297 Sum_probs=88.5
Q ss_pred ccCCCCeEEEEECC--CCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255 344 DMDNAGIVVVKDFV--TRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (765)
Q Consensus 344 ~~~~dG~V~IwDl~--s~~~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~ 420 (765)
+.+.|+.+.|||++ +.++....++|+.+|+|++|+| ++.+|||||.|++ |+|||++.. . .
T Consensus 245 sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL------~----------~ 307 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLRNL------N----------K 307 (422)
T ss_pred eecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeechhc------c----------c
Confidence 45789999999999 5667777899999999999999 6788999999665 999999652 1 4
Q ss_pred EEEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCCCcc
Q 004255 421 HLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDSG 468 (765)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~gg~~~ 468 (765)
+++.+. | +...|..|.|||+- ..||+++.|+.++|||+...|.+..
T Consensus 308 ~lh~~e-~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 308 PLHTFE-G-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred Cceecc-C-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 677775 3 34679999999986 6789999999999999999887753
No 89
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.51 E-value=5.2e-12 Score=145.23 Aligned_cols=96 Identities=22% Similarity=0.335 Sum_probs=80.8
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
.+..|-.|+|+|..+.+++..|.+|...|++++|||||++|++|+.|++ ||+||+-+ | .++-
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDlpt-------~----------~lID 612 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDLPT-------G----------TLID 612 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEeccC-------c----------ceee
Confidence 4456778999999999999999999999999999999999999999765 99999955 3 2333
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCC-CcEEEEeC
Q 004255 424 KLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVL 460 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~Las~S~d-gTVhIwdl 460 (765)
-+. ...+..+++|||+|.+||++..| .-|.+|.=
T Consensus 613 ~~~---vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 613 GLL---VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred eEe---cCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 332 23468899999999999999998 56999964
No 90
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.50 E-value=5.4e-13 Score=150.39 Aligned_cols=218 Identities=17% Similarity=0.239 Sum_probs=145.5
Q ss_pred CEEEEEECCCCeEEEEEeCC-CCEEEEEecC-----CeEEEEeCCe-EEEEECC-CCceeEEEEecCCcccCCCCccccc
Q 004255 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-----RIVAVGLATQ-IYCFDAL-TLENKFSVLTYPVPQLAGQGAVGIN 244 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~-----~~LaV~~~~~-I~iwD~~-t~~~l~tl~t~p~p~~~~~~~~~~~ 244 (765)
+++++|||..-++.+.++-| +.|+++.++. ++||.+..++ ||+||+. +..++++|.+|...
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss----------- 549 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS----------- 549 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc-----------
Confidence 68999999999998888854 7999999875 6888877654 9999975 56677788777652
Q ss_pred cccceeEE--cc---ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccc
Q 004255 245 VGYGPMAV--GP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 319 (765)
Q Consensus 245 ~~~~~~Al--sp---r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~ 319 (765)
...+-| .. +.|.++.+..+.-.. -|.. +.|. ....+. +++++.+
T Consensus 550 --ITsvKFa~~gln~~MiscGADksimFr~----~qk~-----------~~g~-----------~f~r~t-~t~~ktT-- 598 (1080)
T KOG1408|consen 550 --ITSVKFACNGLNRKMISCGADKSIMFRV----NQKA-----------SSGR-----------LFPRHT-QTLSKTT-- 598 (1080)
T ss_pred --eeEEEEeecCCceEEEeccCchhhheeh----hccc-----------cCce-----------eccccc-cccccce--
Confidence 122222 11 334333332211000 0000 0000 000000 1222111
Q ss_pred cCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc---CCCCeEEEEECCCCCEEEEEEcCCCEEEE
Q 004255 320 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA---HTSPISALCFDPSGTLLVTASVYGNNINI 396 (765)
Q Consensus 320 ~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a---H~~~IsaLaFSpdG~lLATaS~dGt~IrV 396 (765)
+. .....|.|+. .+.+.+|..|+|||+.+++..+.|++ |.+..-.+..+|+|-||||... ++++.+
T Consensus 599 -lY-----Dm~Vdp~~k~----v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs-dktl~~ 667 (1080)
T KOG1408|consen 599 -LY-----DMAVDPTSKL----VVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS-DKTLCF 667 (1080)
T ss_pred -EE-----EeeeCCCcce----EEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec-CCceEE
Confidence 00 1111223332 34678999999999999999999985 6778889999999999999988 556999
Q ss_pred EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 397 Wdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
||.-. | .++.++. |+ ...|+.+.|++|.+.|.+.+.||-|.||.+..
T Consensus 668 ~Df~s-------g----------EcvA~m~-GH-sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 668 VDFVS-------G----------ECVAQMT-GH-SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEecc-------c----------hhhhhhc-Cc-chheeeeeecccchhheeecCCceEEEEECch
Confidence 99854 4 4666654 53 34699999999999999999999999999875
No 91
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.49 E-value=8e-14 Score=152.21 Aligned_cols=207 Identities=14% Similarity=0.125 Sum_probs=157.0
Q ss_pred cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEE
Q 004255 96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV 175 (765)
Q Consensus 96 ~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV 175 (765)
....++++|...|.++++.|. +..||+. ++ .+++|
T Consensus 205 k~~~~~~gH~kgvsai~~fp~------------~~hLlLS--~g-------------------------------mD~~v 239 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPK------------KGHLLLS--GG-------------------------------MDGLV 239 (503)
T ss_pred hheeeccCCccccchhhhccc------------eeeEEEe--cC-------------------------------CCceE
Confidence 355677888899999999873 3346654 21 35799
Q ss_pred EEEECCC-CeEEEEEeCCC-CEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccccee
Q 004255 176 RFYSFQS-HCYEHVLRFRS-SVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM 250 (765)
Q Consensus 176 ~lWdlkt-g~~v~tL~~~s-~V~sV~~s~---~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~ 250 (765)
+||++.. +.+++++.+|+ +|.++++|. ++|.++++..|++||++||+++.++.+.-.| ..+
T Consensus 240 klW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~--------------~cv 305 (503)
T KOG0282|consen 240 KLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVP--------------TCV 305 (503)
T ss_pred EEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCc--------------eee
Confidence 9999986 89999998775 899999987 6888999999999999999998887643221 111
Q ss_pred EEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCcc
Q 004255 251 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS 330 (765)
Q Consensus 251 Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s 330 (765)
.+.| ++-
T Consensus 306 kf~p----------------------------------d~~--------------------------------------- 312 (503)
T KOG0282|consen 306 KFHP----------------------------------DNQ--------------------------------------- 312 (503)
T ss_pred ecCC----------------------------------CCC---------------------------------------
Confidence 1111 100
Q ss_pred CCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCC
Q 004255 331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410 (765)
Q Consensus 331 ~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~ 410 (765)
.....|..|+.|+.||++++++++.+..|-+.|..+.|=++|+.++|+|+|+ .+|||+.... .
T Consensus 313 ---------n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk-s~riWe~~~~-------v 375 (503)
T KOG0282|consen 313 ---------NIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK-SVRIWENRIP-------V 375 (503)
T ss_pred ---------cEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc-cEEEEEcCCC-------c
Confidence 0012356789999999999999999999999999999999999999999965 5999998541 0
Q ss_pred CccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 411 ~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
...+...-.++ ...+|..+|.+.|+++=|.|+.|-||.+.+
T Consensus 376 ---------~ik~i~~~~~h--smP~~~~~P~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 376 ---------PIKNIADPEMH--TMPCLTLHPNGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred ---------cchhhcchhhc--cCcceecCCCCCeehhhccCceEEEEeccc
Confidence 11122222222 367899999999999999999999999765
No 92
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.49 E-value=2.9e-13 Score=154.33 Aligned_cols=113 Identities=16% Similarity=0.255 Sum_probs=85.9
Q ss_pred ccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 344 DMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~-~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
++...|.+++||++.. ++..+|.||.+||.|+.|+|++.+||||+.| +.|+|||.... ....+
T Consensus 194 s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD-K~vkiWd~t~~---------------~~~~~ 257 (839)
T KOG0269|consen 194 SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD-KMVKIWDMTDS---------------RAKPK 257 (839)
T ss_pred EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCC-ccEEEEeccCC---------------Cccce
Confidence 3456799999999864 5778899999999999999999999999985 56999998531 01233
Q ss_pred EEEecccccccEEEEEEccCCCE-EEEEeC--CCcEEEEeCCC-CCCCcccccccCC
Q 004255 423 YKLHRGITSATIQDICFSHYSQW-IAIVSS--KGTCHVFVLSP-FGGDSGFQTLSSQ 475 (765)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~-Las~S~--dgTVhIwdl~~-~gg~~~~~~h~~~ 475 (765)
.... +.++|..+.|-|+-++ ||+++. |-.||||||.. |=-...+..|...
T Consensus 258 ~tIn---Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~ 311 (839)
T KOG0269|consen 258 HTIN---TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDS 311 (839)
T ss_pred eEEe---ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcc
Confidence 4443 4578999999999865 666664 67799999964 4444567777643
No 93
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.48 E-value=4.7e-12 Score=144.15 Aligned_cols=301 Identities=14% Similarity=0.115 Sum_probs=201.6
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcce--------EeeeeccCCEEEEEEecCCCCCCCCCCcc
Q 004255 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFN--------ELVSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (765)
Q Consensus 56 ~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~--------ells~~dg~V~~v~~lP~p~~~~~~d~f~ 127 (765)
+.+|.|+.+-. . +...+.|++=.++.+..|.++..+.-. -.+.+|...|+.+.++-
T Consensus 320 ~~kiks~dv~~--~--~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~------------ 383 (888)
T KOG0306|consen 320 SAKIKSFDVTP--S--GGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS------------ 383 (888)
T ss_pred hhheeEEEEEe--c--CCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec------------
Confidence 45566644422 2 222356666557789999997633320 12335556788888773
Q ss_pred ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeE
Q 004255 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIV 205 (765)
Q Consensus 128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~L 205 (765)
+.-+|+ ++. .+.++||+.+++++++++... -+++..|-| +.+
T Consensus 384 -d~~~~~--Sga--------------------------------~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~I 427 (888)
T KOG0306|consen 384 -DSILLA--SGA--------------------------------GESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYI 427 (888)
T ss_pred -Cceeee--ecC--------------------------------CCcEEEEEccCcceeEEeccc-cEEEEEecCCCceE
Confidence 212333 221 147999999999999999876 677777766 677
Q ss_pred EEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCc--eecCCccccCCCCCCC
Q 004255 206 AVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTL--LLSNSGRLSPQNLTPS 280 (765)
Q Consensus 206 aV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~--~~~~~G~~s~~~lt~~ 280 (765)
++|.. +.+.+||+....++.+++.|.. ..++++++| +..+.++.+. ..+...-+
T Consensus 428 v~G~k~Gel~vfdlaS~~l~Eti~AHdg-------------aIWsi~~~pD~~g~vT~saDktVkfWdf~l~-------- 486 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASASLVETIRAHDG-------------AIWSISLSPDNKGFVTGSADKTVKFWDFKLV-------- 486 (888)
T ss_pred EEeccCCceEEEEeehhhhhhhhhcccc-------------ceeeeeecCCCCceEEecCCcEEEEEeEEEE--------
Confidence 77776 4699999999888888877654 257888988 6666665442 22211100
Q ss_pred CCCCCcCCCCCcceeeehhhhhhhhhcccceeecc-cccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 004255 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSK-YCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (765)
Q Consensus 281 ~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~-~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~ 359 (765)
++ .+|+ .+ |.|+= +...+--.........+|+++..+. +--|.+|+||-+.+.
T Consensus 487 -----~~-~~gt---------~~-------k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV----sLLdnTVkVyflDtl 540 (888)
T KOG0306|consen 487 -----VS-VPGT---------QK-------KVLSLKHTRTLELEDDVLCVSVSPDGKLLAV----SLLDNTVKVYFLDTL 540 (888)
T ss_pred -----ec-cCcc---------cc-------eeeeeccceEEeccccEEEEEEcCCCcEEEE----EeccCeEEEEEecce
Confidence 00 0000 00 00100 0000001122345566777776553 346789999999999
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 004255 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (765)
Q Consensus 360 ~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaF 439 (765)
+-.-.+-||.-||.||..|||+++++|||. |++|+||-+.- |. +-.-+. + |...|.++.|
T Consensus 541 KFflsLYGHkLPV~smDIS~DSklivTgSA-DKnVKiWGLdF-------GD----------CHKS~f-A-HdDSvm~V~F 600 (888)
T KOG0306|consen 541 KFFLSLYGHKLPVLSMDISPDSKLIVTGSA-DKNVKIWGLDF-------GD----------CHKSFF-A-HDDSVMSVQF 600 (888)
T ss_pred eeeeeecccccceeEEeccCCcCeEEeccC-CCceEEecccc-------ch----------hhhhhh-c-ccCceeEEEE
Confidence 999999999999999999999999999999 56699998754 31 212222 2 3356999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccCC
Q 004255 440 SHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ 475 (765)
Q Consensus 440 SpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~~ 475 (765)
-|+...+.+++.|+.|+-||-..+.....+.+|...
T Consensus 601 ~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e 636 (888)
T KOG0306|consen 601 LPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE 636 (888)
T ss_pred cccceeEEEecCcceEEeechhhhhhheeeccchhe
Confidence 999999999999999999999999999999998654
No 94
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.48 E-value=1.9e-12 Score=131.82 Aligned_cols=283 Identities=13% Similarity=0.093 Sum_probs=181.3
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEE
Q 004255 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (765)
Q Consensus 54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLL 133 (765)
+++-.|.-..|-.. . ..+-.|+.+..+|--+..-.++|...-++.+|.|.|....+..+- +.
T Consensus 12 ghtrpvvdl~~s~i--t--p~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na--------------~~ 73 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPI--T--PDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNA--------------TR 73 (334)
T ss_pred CCCcceeEEeccCC--C--CCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchh--------------hh
Confidence 34555555555432 1 246789999998854444456788999999999999988765331 22
Q ss_pred EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEE-eC
Q 004255 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG-LA 210 (765)
Q Consensus 134 avv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~-~~ 210 (765)
|. ++ ..+-+-++||.-+|..++++.+..-|.+++|+. +.|+.| .+
T Consensus 74 aa-sa-------------------------------aadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~e 121 (334)
T KOG0278|consen 74 AA-SA-------------------------------AADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQE 121 (334)
T ss_pred hh-hh-------------------------------cccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchH
Confidence 21 10 023477899999999999999999999999987 455554 44
Q ss_pred CeEEEEECCCCce-eEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCceecCCccccCCCCCCCCCCCCcCC
Q 004255 211 TQIYCFDALTLEN-KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (765)
Q Consensus 211 ~~I~iwD~~t~~~-l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp-r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp 288 (765)
.-++|||+...+. +..+.+|+.. + ....+..+- ..|..+.+.. ++.||..+...+
T Consensus 122 kllrvfdln~p~App~E~~ghtg~---------I--r~v~wc~eD~~iLSSadd~t------VRLWD~rTgt~v------ 178 (334)
T KOG0278|consen 122 KLLRVFDLNRPKAPPKEISGHTGG---------I--RTVLWCHEDKCILSSADDKT------VRLWDHRTGTEV------ 178 (334)
T ss_pred HHhhhhhccCCCCCchhhcCCCCc---------c--eeEEEeccCceEEeeccCCc------eEEEEeccCcEE------
Confidence 4589999876542 2333344431 1 112222332 5566666542 234665543111
Q ss_pred CCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC
Q 004255 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH 368 (765)
Q Consensus 289 ~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH 368 (765)
++|. + ...+.+.-.+++++. .+....+.|..||..+...++.++..
T Consensus 179 ----------------------~sL~------~-~s~VtSlEvs~dG~i-----lTia~gssV~Fwdaksf~~lKs~k~P 224 (334)
T KOG0278|consen 179 ----------------------QSLE------F-NSPVTSLEVSQDGRI-----LTIAYGSSVKFWDAKSFGLLKSYKMP 224 (334)
T ss_pred ----------------------EEEe------c-CCCCcceeeccCCCE-----EEEecCceeEEeccccccceeeccCc
Confidence 0100 0 000011111122222 12345678999999999988887654
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (765)
Q Consensus 369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las 448 (765)
..|.+.+++|+-..++.++.|+. ++.||..+ | ..+-.+..|+. .+|.|+.|||||..-|+
T Consensus 225 -~nV~SASL~P~k~~fVaGged~~-~~kfDy~T-------g----------eEi~~~nkgh~-gpVhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 225 -CNVESASLHPKKEFFVAGGEDFK-VYKFDYNT-------G----------EEIGSYNKGHF-GPVHCVRFSPDGELYAS 284 (334)
T ss_pred -cccccccccCCCceEEecCcceE-EEEEeccC-------C----------ceeeecccCCC-CceEEEEECCCCceeec
Confidence 45889999999999999999765 88999866 3 23333335644 57999999999999999
Q ss_pred EeCCCcEEEEeCCCC
Q 004255 449 VSSKGTCHVFVLSPF 463 (765)
Q Consensus 449 ~S~dgTVhIwdl~~~ 463 (765)
||.||||+||...+.
T Consensus 285 GSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 285 GSEDGTIRLWQTTPG 299 (334)
T ss_pred cCCCceEEEEEecCC
Confidence 999999999998764
No 95
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.1e-12 Score=143.09 Aligned_cols=238 Identities=16% Similarity=0.171 Sum_probs=179.4
Q ss_pred CCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 74 ~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
..++|++|....+.+|+- ..+.+.++.+.+...|..+.+.++ ...||+-.
T Consensus 187 s~n~laValg~~vylW~~-~s~~v~~l~~~~~~~vtSv~ws~~-------------G~~LavG~---------------- 236 (484)
T KOG0305|consen 187 SANVLAVALGQSVYLWSA-SSGSVTELCSFGEELVTSVKWSPD-------------GSHLAVGT---------------- 236 (484)
T ss_pred cCCeEEEEecceEEEEec-CCCceEEeEecCCCceEEEEECCC-------------CCEEEEee----------------
Confidence 467999999999999998 467788888887889999999864 23677622
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC--CCCEEEEEecCCeEEEEeC-CeEEEEECCCCceeEE-EEe
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSPRIVAVGLA-TQIYCFDALTLENKFS-VLT 229 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~--~s~V~sV~~s~~~LaV~~~-~~I~iwD~~t~~~l~t-l~t 229 (765)
..++|.|||.++.+.+.++.+ ...|-+++.+...|.+|.. ..|..+|++..+.... +..
T Consensus 237 -----------------~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~ 299 (484)
T KOG0305|consen 237 -----------------SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQG 299 (484)
T ss_pred -----------------cCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhc
Confidence 236899999999999999987 4689999999988888764 5799999887654333 222
Q ss_pred cCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccc
Q 004255 230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (765)
Q Consensus 230 ~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~ 309 (765)
|..- .+. |+...
T Consensus 300 H~qe---------------VCg-----Lkws~------------------------------------------------ 311 (484)
T KOG0305|consen 300 HRQE---------------VCG-----LKWSP------------------------------------------------ 311 (484)
T ss_pred ccce---------------eee-----eEECC------------------------------------------------
Confidence 2210 011 11111
Q ss_pred ceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEE
Q 004255 310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTAS 388 (765)
Q Consensus 310 ~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp-dG~lLATaS 388 (765)
.+..+++++.|..+.|||......+..|..|+..|-+|+|+| ...+||||+
T Consensus 312 ----------------------------d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 312 ----------------------------DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred ----------------------------CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcC
Confidence 111234567889999999988889999999999999999999 677999974
Q ss_pred -cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE--eCCCcEEEEeCCCCCC
Q 004255 389 -VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV--SSKGTCHVFVLSPFGG 465 (765)
Q Consensus 389 -~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~--S~dgTVhIwdl~~~gg 465 (765)
..|..|++||+.+ | .++.... +...|.+|.||+..+-|+++ -.++-|.||+......
T Consensus 364 Gs~D~~i~fwn~~~-------g----------~~i~~vd---tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 364 GSADRCIKFWNTNT-------G----------ARIDSVD---TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL 423 (484)
T ss_pred CCcccEEEEEEcCC-------C----------cEecccc---cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence 3356799999865 4 3444443 34579999999999766655 3466899999999888
Q ss_pred CcccccccC
Q 004255 466 DSGFQTLSS 474 (765)
Q Consensus 466 ~~~~~~h~~ 474 (765)
...+.+|+.
T Consensus 424 ~~~l~gH~~ 432 (484)
T KOG0305|consen 424 VAELLGHTS 432 (484)
T ss_pred eeeecCCcc
Confidence 888899974
No 96
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1e-13 Score=156.92 Aligned_cols=213 Identities=14% Similarity=0.235 Sum_probs=157.4
Q ss_pred CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
.++++.|..+. +-+|.+.... ..--|-+|+++|.+|.+.+. . -||+. +.
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~-~i~S~~~hespIeSl~f~~~-----------E--~Llaa--gs-------------- 89 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPN-AITSLTGHESPIESLTFDTS-----------E--RLLAA--GS-------------- 89 (825)
T ss_pred ceeeccCCCceeeccccccCCc-hhheeeccCCcceeeecCcc-----------h--hhhcc--cc--------------
Confidence 47888887776 5699986533 33346689999999998742 1 25432 20
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t 229 (765)
..++|+|||+..++.+++|.++ ..+.+|.|+| .+.|.+. +..+.+||.+..-|.++..+
T Consensus 90 -----------------asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s 152 (825)
T KOG0267|consen 90 -----------------ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS 152 (825)
T ss_pred -----------------cCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC
Confidence 1379999999999999999865 6999999999 4556554 45699999997778787776
Q ss_pred cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhc
Q 004255 230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (765)
Q Consensus 230 ~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~ 307 (765)
|+- ....++|+| ||+|.+
T Consensus 153 ~~~-------------vv~~l~lsP~Gr~v~~g----------------------------------------------- 172 (825)
T KOG0267|consen 153 HTR-------------VVDVLRLSPDGRWVASG----------------------------------------------- 172 (825)
T ss_pred Ccc-------------eeEEEeecCCCceeecc-----------------------------------------------
Confidence 543 134455555 444333
Q ss_pred ccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEE
Q 004255 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTA 387 (765)
Q Consensus 308 G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATa 387 (765)
+.|.+++|||+..|+.+..|+.|...|.++.|+|..-+|+++
T Consensus 173 --------------------------------------~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 173 --------------------------------------GEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPG 214 (825)
T ss_pred --------------------------------------CCcceeeeecccccccccccccccccccccccCchhhhhccC
Confidence 346789999999999999999999999999999999999999
Q ss_pred EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 004255 388 SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (765)
Q Consensus 388 S~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d 452 (765)
|.|. ++++||+++. ..+-. .+.....|.+++|+||++.+++|-..
T Consensus 215 s~d~-tv~f~dletf-----------------e~I~s--~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 215 SSDR-TVRFWDLETF-----------------EVISS--GKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CCCc-eeeeecccee-----------------EEeec--cCCccCCceeeeecCCceeeecCchh
Confidence 9965 5999999652 11111 11123469999999999988877544
No 97
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=5e-13 Score=139.62 Aligned_cols=109 Identities=24% Similarity=0.341 Sum_probs=95.3
Q ss_pred cccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255 343 ADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~ 421 (765)
+++..||.|+||.+.+|.++..|. +|+..|.|+.||.|+..+.++|. +.++||.-++. | .+
T Consensus 279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf-D~tvRiHGlKS-------G----------K~ 340 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF-DQTVRIHGLKS-------G----------KC 340 (508)
T ss_pred hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc-cceEEEecccc-------c----------hh
Confidence 456789999999999999999997 99999999999999999999999 56799998864 4 56
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccc
Q 004255 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471 (765)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~ 471 (765)
+.++ ||+. .-|....|++||.++.++|.||||+||+..+..+..+++.
T Consensus 341 LKEf-rGHs-Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~ 388 (508)
T KOG0275|consen 341 LKEF-RGHS-SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP 388 (508)
T ss_pred HHHh-cCcc-ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC
Confidence 7777 5754 4599999999999999999999999999998877766654
No 98
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.45 E-value=2.9e-13 Score=145.25 Aligned_cols=210 Identities=16% Similarity=0.225 Sum_probs=145.6
Q ss_pred CCCCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCce
Q 004255 191 FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLL 265 (765)
Q Consensus 191 ~~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~ 265 (765)
-..+|..|+..| |.|++|. .+...+|+..+..-...+..|..| +..|.+++ .|+.+++....
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~-------------Vr~m~ws~~g~wmiSgD~gG~ 161 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSP-------------VRTMKWSHNGTWMISGDKGGM 161 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhccc-------------ceeEEEccCCCEEEEcCCCce
Confidence 445889999987 5666655 568999998654333333456653 34577776 78888776532
Q ss_pred ecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCC-ccccccccccc
Q 004255 266 LSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS-VWKVGRHAGAD 344 (765)
Q Consensus 266 ~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~-~~~~~~~~~~~ 344 (765)
+ .-||.-... .+ .+..+-.+ ....+++++ +.+ ..+
T Consensus 162 i-----KyWqpnmnn---------------------Vk--------~~~ahh~e-----aIRdlafSpnDsk-----F~t 197 (464)
T KOG0284|consen 162 I-----KYWQPNMNN---------------------VK--------IIQAHHAE-----AIRDLAFSPNDSK-----FLT 197 (464)
T ss_pred E-----Eecccchhh---------------------hH--------HhhHhhhh-----hhheeccCCCCce-----eEE
Confidence 2 124322110 00 00000000 000011111 111 346
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 004255 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (765)
Q Consensus 345 ~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~ 424 (765)
+..||+|+|||....+....|.+|--.|.++.|+|.-.+||++|. ++.|++||.++ | .++..
T Consensus 198 ~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk-DnlVKlWDprS-------g----------~cl~t 259 (464)
T KOG0284|consen 198 CSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK-DNLVKLWDPRS-------G----------SCLAT 259 (464)
T ss_pred ecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC-CceeEeecCCC-------c----------chhhh
Confidence 788999999999999998999999999999999999999999999 55899999865 4 46777
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccCCCC
Q 004255 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGG 477 (765)
Q Consensus 425 l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~~~~ 477 (765)
++ ++ ...|..+.|+++++||+++|.|..+++|||...+....+++|...+.
T Consensus 260 lh-~H-KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~ 310 (464)
T KOG0284|consen 260 LH-GH-KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVT 310 (464)
T ss_pred hh-hc-cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhe
Confidence 75 33 34699999999999999999999999999998888888899965443
No 99
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=3.8e-12 Score=147.02 Aligned_cols=105 Identities=17% Similarity=0.303 Sum_probs=85.6
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~ 421 (765)
.++.-|.+|+||++....++..| .|..-|+|++|+| |.+++++||.||+ ||||+|... .+..
T Consensus 384 LSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~K-vRiWsI~d~---------------~Vv~ 446 (712)
T KOG0283|consen 384 LSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGK-VRLWSISDK---------------KVVD 446 (712)
T ss_pred EeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCCCcEeecccccc-eEEeecCcC---------------eeEe
Confidence 35678999999999999999998 5899999999999 8899999999876 999999541 0111
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccc
Q 004255 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 469 (765)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~ 469 (765)
-++++ ..|++++|+|||++.++|+.+|.+++|+.....-....
T Consensus 447 W~Dl~-----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 447 WNDLR-----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred ehhhh-----hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 12232 46999999999999999999999999998765544443
No 100
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.45 E-value=9.4e-12 Score=129.17 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=100.6
Q ss_pred CCEEEEEECCCCeEEEEEeCCCCEEEEEecC-----CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 004255 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-----RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~-----~~LaV~~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~ 245 (765)
+.+|++||..|-+..-.+++++.||+-+++| -+||+|..+ +|++.|+..|..-++|.+|...
T Consensus 123 DhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~------------ 190 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG------------ 190 (397)
T ss_pred cceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc------------
Confidence 5799999999999999999999999888876 477888766 7999999999999999888751
Q ss_pred ccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCC
Q 004255 246 GYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 323 (765)
Q Consensus 246 ~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~ 323 (765)
+-.+.++| .|+
T Consensus 191 -vlaV~Wsp~~e~v------------------------------------------------------------------ 203 (397)
T KOG4283|consen 191 -VLAVEWSPSSEWV------------------------------------------------------------------ 203 (397)
T ss_pred -eEEEEeccCceeE------------------------------------------------------------------
Confidence 12233333 121
Q ss_pred CCCCCccCCCccccccccccccCCCCeEEEEECCCC------------c---EEEEeccCCCCeEEEEECCCCCEEEEEE
Q 004255 324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------------A---IISQFKAHTSPISALCFDPSGTLLVTAS 388 (765)
Q Consensus 324 ~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~------------~---~i~~~~aH~~~IsaLaFSpdG~lLATaS 388 (765)
+++++.||.|++||++.. + .+.+-.+|.+.|+.+||..||.+|++++
T Consensus 204 ------------------LatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 204 ------------------LATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG 265 (397)
T ss_pred ------------------EEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence 123456777777777532 1 1222347889999999999999999999
Q ss_pred cCCCEEEEEeCCC
Q 004255 389 VYGNNINIFRIMP 401 (765)
Q Consensus 389 ~dGt~IrVWdi~~ 401 (765)
.|++ +|+|+...
T Consensus 266 td~r-~r~wn~~~ 277 (397)
T KOG4283|consen 266 TDDR-IRVWNMES 277 (397)
T ss_pred Cccc-eEEeeccc
Confidence 9776 99999754
No 101
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=5.2e-11 Score=124.52 Aligned_cols=277 Identities=16% Similarity=0.212 Sum_probs=162.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEc-cCCCcceEe--eeeccCCEEEEEEecCCCCCCCCCCcc
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDV-EDASNFNEL--VSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv-~~~g~~~el--ls~~dg~V~~v~~lP~p~~~~~~d~f~ 127 (765)
..+++|-|..+.||.- ++-+++|..++ ++|||. .+.++...+ ..-|+|.|..|.+.+ |. |
T Consensus 9 ~s~h~DlihdVs~D~~-------GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAh-PE-------f- 72 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFY-------GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAH-PE-------F- 72 (361)
T ss_pred ccCCcceeeeeeeccc-------CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecC-cc-------c-
Confidence 3568899999999982 55677777775 999994 445555544 345788898888885 32 2
Q ss_pred ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEEC-----CCC--e--EEEEEe-CCCCEEE
Q 004255 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-----QSH--C--YEHVLR-FRSSVCM 197 (765)
Q Consensus 128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdl-----ktg--~--~v~tL~-~~s~V~s 197 (765)
+..||.++- +++|+||.- +.. + ...+|. -++.|++
T Consensus 73 --GqvvA~cS~---------------------------------Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~D 117 (361)
T KOG2445|consen 73 --GQVVATCSY---------------------------------DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTD 117 (361)
T ss_pred --cceEEEEec---------------------------------CCceeeeeecccccccccceeEEEEEeecCCcceeE
Confidence 347776542 478999964 221 1 233443 4679999
Q ss_pred EEecCC----eEE-EEeCCeEEEEECCCCceeE--EEEecCCcccCCCCccccc-cccceeEEccceEEEecCCceecCC
Q 004255 198 VRCSPR----IVA-VGLATQIYCFDALTLENKF--SVLTYPVPQLAGQGAVGIN-VGYGPMAVGPRWLAYASNTLLLSNS 269 (765)
Q Consensus 198 V~~s~~----~La-V~~~~~I~iwD~~t~~~l~--tl~t~p~p~~~~~~~~~~~-~~~~~~Alspr~LAyas~~~~~~~~ 269 (765)
|.|.|+ .|| ++.++.++||++.+.-.+. +|. |..... ...++.+ ....++.+.+
T Consensus 118 V~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq-~Ei~~~--~~pp~~~~~~~~CvsWn~--------------- 179 (361)
T KOG2445|consen 118 VKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ-HEIQNV--IDPPGKNKQPCFCVSWNP--------------- 179 (361)
T ss_pred EEecchhcceEEEEeccCcEEEEEecCCccccccchhh-hhhhhc--cCCcccccCcceEEeecc---------------
Confidence 999983 344 4556789999876533222 111 110000 0000000 0000111110
Q ss_pred ccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCC
Q 004255 270 GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG 349 (765)
Q Consensus 270 G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG 349 (765)
++... .+.| -|. + .++..-+
T Consensus 180 sr~~~-----------------p~iA-----------vgs----------------------~----------e~a~~~~ 199 (361)
T KOG2445|consen 180 SRMHE-----------------PLIA-----------VGS----------------------D----------EDAPHLN 199 (361)
T ss_pred ccccC-----------------ceEE-----------EEc----------------------c----------cCCcccc
Confidence 00000 0000 000 0 0122345
Q ss_pred eEEEEECCCC----cEEEEeccCCCCeEEEEECCC----CCEEEEEEcCCCEEEEEeCCCCccc-CCCCCC--ccccCCc
Q 004255 350 IVVVKDFVTR----AIISQFKAHTSPISALCFDPS----GTLLVTASVYGNNINIFRIMPSCMR-SGSGNH--KYDWNSS 418 (765)
Q Consensus 350 ~V~IwDl~s~----~~i~~~~aH~~~IsaLaFSpd----G~lLATaS~dGt~IrVWdi~~~~~~-~~sG~~--~~~~~~s 418 (765)
.++||..... ..+.++.+|+.||..|+|.|+ -.+||+|+.|| |+||.+...+.. -..+.. ....+-.
T Consensus 200 ~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~ 277 (361)
T KOG2445|consen 200 KVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLP 277 (361)
T ss_pred ceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccccc
Confidence 7888876553 256778899999999999995 34799999977 999999752100 000000 0000111
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 419 ~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
.+.+.++ +.|++.|+.+.|+--|..|+++++||+|++|..+
T Consensus 278 v~~vs~~--~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 278 VEKVSEL--DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eEEeeec--cCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 1223333 4467789999999999999999999999999865
No 102
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.43 E-value=2.5e-12 Score=134.14 Aligned_cols=98 Identities=17% Similarity=0.244 Sum_probs=82.0
Q ss_pred CeEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255 349 GIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~---~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l 425 (765)
-++++||+++.++...- ..|++.|+++.+|+.|++.+|||.||. |+|||=-. .+++..+
T Consensus 238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS-----------------~rCv~t~ 299 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA-IKLWDGVS-----------------NRCVRTI 299 (430)
T ss_pred CceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCc-EEeecccc-----------------HHHHHHH
Confidence 47889999987765432 369999999999999999999999886 99999422 2566666
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g 464 (765)
.+.+..+.|++..|+.||+||.+++.|.++++|.|.+..
T Consensus 300 ~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 300 GNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred HhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 666666789999999999999999999999999998743
No 103
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.42 E-value=8.8e-12 Score=130.81 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=91.5
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG 428 (765)
..+-||.-..++++..+-+|.+.|+.|+|.+||+.|.+++.++-.|-.||++.. + ..+|.|.|.
T Consensus 230 q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~------~----------~pv~~L~rh 293 (406)
T KOG2919|consen 230 QRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS------R----------DPVYALERH 293 (406)
T ss_pred ceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc------c----------chhhhhhhh
Confidence 345556556677888888999999999999999999999998888999999652 2 577888764
Q ss_pred c--ccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcc-cccccCCCCCCcccccc
Q 004255 429 I--TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG-FQTLSSQGGDPYLFPVL 485 (765)
Q Consensus 429 ~--~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~-~~~h~~~~~~~~~~p~~ 485 (765)
. ++..|+ ....|+|++||+|+.||.|++||++.+|.++. +..|...+.+-.+.|+.
T Consensus 294 v~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m 352 (406)
T KOG2919|consen 294 VGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM 352 (406)
T ss_pred ccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccc
Confidence 3 333444 44569999999999999999999999888554 34454445555555553
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=9e-12 Score=126.70 Aligned_cols=262 Identities=15% Similarity=0.209 Sum_probs=168.3
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC--cceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS--NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g--~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
.|+|.|.-+-.|. -++.|+++..++ ++||.+.+++ ++...|.+|.|||.-+.+. .|. | +
T Consensus 9 ~H~D~IHda~lDy-------ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wa-hPk-------~-G-- 70 (299)
T KOG1332|consen 9 QHEDMIHDAQLDY-------YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWA-HPK-------F-G-- 70 (299)
T ss_pred hhhhhhhHhhhhh-------hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeec-ccc-------c-C--
Confidence 4556665444443 245677777665 9999998877 5677889999999999987 332 2 2
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC---CCCEEEEEecC----C
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF---RSSVCMVRCSP----R 203 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~---~s~V~sV~~s~----~ 203 (765)
.+||.++ .+++|.||.-.+|+--+...+ .+.|.+|++-| -
T Consensus 71 ~iLAScs---------------------------------YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl 117 (299)
T KOG1332|consen 71 TILASCS---------------------------------YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGL 117 (299)
T ss_pred cEeeEee---------------------------------cCceEEEEecCCCchhhhhhhhhhcccceeecccccccce
Confidence 3887643 257999999998865444443 46899999987 2
Q ss_pred eEEEE-eCCeEEEEECCCC-ce-eEEE-EecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCC
Q 004255 204 IVAVG-LATQIYCFDALTL-EN-KFSV-LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP 279 (765)
Q Consensus 204 ~LaV~-~~~~I~iwD~~t~-~~-l~tl-~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~ 279 (765)
+||++ .|+.|.|++..+- .- -..+ ..|+. +.+++...| +.-+
T Consensus 118 ~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-------------GvnsVswap-----a~~~---------------- 163 (299)
T KOG1332|consen 118 LLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-------------GVNSVSWAP-----ASAP---------------- 163 (299)
T ss_pred EEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-------------ccceeeecC-----cCCC----------------
Confidence 56664 4678998876543 11 0111 12222 123333322 0000
Q ss_pred CCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 004255 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (765)
Q Consensus 280 ~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~ 359 (765)
|.++.+. .++.+ .-+++++.|..|+||+..++
T Consensus 164 -----------g~~~~~~-------~~~~~------------------------------krlvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 164 -----------GSLVDQG-------PAAKV------------------------------KRLVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred -----------ccccccC-------ccccc------------------------------ceeeccCCccceeeeecCCc
Confidence 1111000 00000 01346778999999999886
Q ss_pred c--EEEEeccCCCCeEEEEECCCC----CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccccc
Q 004255 360 A--IISQFKAHTSPISALCFDPSG----TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT 433 (765)
Q Consensus 360 ~--~i~~~~aH~~~IsaLaFSpdG----~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~ 433 (765)
+ ...+|++|++.|..+++.|.- ..||+||.||+ +-||..... + ..|.. ..|.+| ...
T Consensus 196 ~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-viIwt~~~e------~---e~wk~--tll~~f-----~~~ 258 (299)
T KOG1332|consen 196 SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-VIIWTKDEE------Y---EPWKK--TLLEEF-----PDV 258 (299)
T ss_pred chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-EEEEEecCc------c---Ccccc--cccccC-----Ccc
Confidence 4 344599999999999999964 46999999887 779986421 1 11211 222222 346
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 434 IQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 434 I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
++.++||..|+.||++..|+.|.+|.-+..|.
T Consensus 259 ~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 259 VWRVSWSLSGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred eEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence 99999999999999999999999998665443
No 105
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.42 E-value=4.9e-12 Score=139.04 Aligned_cols=106 Identities=20% Similarity=0.233 Sum_probs=77.3
Q ss_pred cccCCCCeEEEEECCCCcE---EEEeccCCC--CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 004255 343 ADMDNAGIVVVKDFVTRAI---ISQFKAHTS--PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~~~---i~~~~aH~~--~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~ 417 (765)
+.+..||.|++||..+..+ ...=+||.. .|+||+||+||++|++-+.|++ ++|||++.. .
T Consensus 333 Aagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDLrq~------k-------- 397 (641)
T KOG0772|consen 333 AAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDLRQF------K-------- 397 (641)
T ss_pred hhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeecccc------c--------
Confidence 3456799999999865432 222358988 9999999999999999999776 999999642 1
Q ss_pred cceEEEEEecccc-cccEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCCCC
Q 004255 418 SHVHLYKLHRGIT-SATIQDICFSHYSQWIAIVSS------KGTCHVFVLSPFGGD 466 (765)
Q Consensus 418 s~~~l~~l~rG~~-~a~I~slaFSpDg~~Las~S~------dgTVhIwdl~~~gg~ 466 (765)
.+|.... |.- ...-++++||||.+.|++|+. -|++.+||-.++...
T Consensus 398 --kpL~~~t-gL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v 450 (641)
T KOG0772|consen 398 --KPLNVRT-GLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV 450 (641)
T ss_pred --cchhhhc-CCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE
Confidence 3343322 222 224578999999999999975 467888887776543
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.41 E-value=3.5e-11 Score=136.34 Aligned_cols=203 Identities=15% Similarity=0.177 Sum_probs=132.6
Q ss_pred CCEEEEEECCCCeEEEEEeCCC---CEE-EEEe---cCCeEEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCcccc
Q 004255 172 PTAVRFYSFQSHCYEHVLRFRS---SVC-MVRC---SPRIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 243 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~s---~V~-sV~~---s~~~LaV-~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~ 243 (765)
+++++||+-+.++++.+..|-+ -|- .+++ .+-+|++ +.|..|.+|...+.+.+++|.+|..
T Consensus 34 d~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~s----------- 102 (745)
T KOG0301|consen 34 DGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKS----------- 102 (745)
T ss_pred CCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcccc-----------
Confidence 3689999998888877554432 221 1332 2334554 5567899999999999999999876
Q ss_pred ccccceeEEcc---ceEEEecCC--ceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeeccccc
Q 004255 244 NVGYGPMAVGP---RWLAYASNT--LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 318 (765)
Q Consensus 244 ~~~~~~~Alsp---r~LAyas~~--~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~ 318 (765)
+.++++. -.|.+++-+ ..+|..|.+ + -.+.+|..
T Consensus 103 ----nVC~ls~~~~~~~iSgSWD~TakvW~~~~l---------------------~----------------~~l~gH~a 141 (745)
T KOG0301|consen 103 ----NVCSLSIGEDGTLISGSWDSTAKVWRIGEL---------------------V----------------YSLQGHTA 141 (745)
T ss_pred ----ceeeeecCCcCceEecccccceEEecchhh---------------------h----------------cccCCcch
Confidence 2344432 112333322 111111100 0 01111111
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 004255 319 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR 398 (765)
Q Consensus 319 ~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWd 398 (765)
.++ +..+-+. ....+++.|.+|++|.- ++.+.+|.+|++-|..|++=+++. +++||.|| .||+|+
T Consensus 142 sVW------Av~~l~e-----~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg-~Ir~w~ 206 (745)
T KOG0301|consen 142 SVW------AVASLPE-----NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDG-SIRLWD 206 (745)
T ss_pred hee------eeeecCC-----CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCc-eEEEEe
Confidence 100 0000000 02347889999999975 788999999999999999988764 66899977 599999
Q ss_pred CCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 399 i~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
+. | ..++++. |++ .-|++++-.++++.+++++.|+|++||+..
T Consensus 207 ~~--------g----------e~l~~~~-ght-n~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 207 LD--------G----------EVLLEMH-GHT-NFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred cc--------C----------ceeeeee-ccc-eEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 83 4 4777775 544 569999988888999999999999999976
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.41 E-value=1e-12 Score=147.65 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=93.6
Q ss_pred ccCCCCeEEEEECCCCc--EE--------EEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc
Q 004255 344 DMDNAGIVVVKDFVTRA--II--------SQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK 412 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~--~i--------~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~ 412 (765)
+++-|+.|.|||+.++. .+ ..+. +|..+|++++-++.|+.+++|+..+ .+|+||.++ +
T Consensus 135 SgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek-~lr~wDprt-------~--- 203 (735)
T KOG0308|consen 135 SGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK-DLRLWDPRT-------C--- 203 (735)
T ss_pred ecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc-ceEEecccc-------c---
Confidence 45678999999999772 22 2333 8899999999999999999999954 699999866 2
Q ss_pred cccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccC
Q 004255 413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (765)
Q Consensus 413 ~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~ 474 (765)
.++.+|+ |++ ..|.+|-.++||+.+.++|+||||+||||....+..++.-|..
T Consensus 204 -------~kimkLr-GHT-dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e 256 (735)
T KOG0308|consen 204 -------KKIMKLR-GHT-DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE 256 (735)
T ss_pred -------cceeeee-ccc-cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC
Confidence 5778886 755 4699999999999999999999999999999999988888864
No 108
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=8.1e-11 Score=123.60 Aligned_cols=97 Identities=12% Similarity=0.237 Sum_probs=80.1
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
.|-+|+.-++.+.+.+.-|.||...|++|+.+|-+..++++|.|+ +||+||++.. . ++.+..+.
T Consensus 78 ~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~-tvrLWDlR~~------~---------cqg~l~~~ 141 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDK-TVRLWDLRVK------K---------CQGLLNLS 141 (311)
T ss_pred CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCC-eEEeeEecCC------C---------CceEEecC
Confidence 467899999999999999999999999999999999999999955 5999999742 0 12232332
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
+ . ..+||.|.|-++|++...+.|+|||+..++.
T Consensus 142 -~-~----pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk 174 (311)
T KOG1446|consen 142 -G-R----PIAAFDPEGLIFALANGSELIKLYDLRSFDK 174 (311)
T ss_pred -C-C----cceeECCCCcEEEEecCCCeEEEEEecccCC
Confidence 1 1 2379999999999999999999999999854
No 109
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.7e-12 Score=153.68 Aligned_cols=246 Identities=18% Similarity=0.235 Sum_probs=166.4
Q ss_pred EEeeccCCCCCC--CeEEEEEecCc-EEEEEccCC--CcceE---eeeeccCCEEEEEEecCCCCCCCCCCccccCCEEE
Q 004255 63 GFDRLEYGPSVF--KQVLLLGYQNG-FQVLDVEDA--SNFNE---LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL 134 (765)
Q Consensus 63 ~fd~l~~~~~~~--~~vL~~G~~~G-~qVWdv~~~--g~~~e---lls~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLa 134 (765)
+|++|..+.... .-+|+.|..+| |-+||.... ++-.+ ..+.|.|+|+.+.|.| |..+ +||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~----------~q~n--lLA 133 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNP----------FQGN--LLA 133 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccc----------cCCc--eee
Confidence 466655432211 24788888887 999999762 33333 4567889999999986 5444 776
Q ss_pred EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE---eCCCCEEEEEecC---CeEEEE
Q 004255 135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL---RFRSSVCMVRCSP---RIVAVG 208 (765)
Q Consensus 135 vv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL---~~~s~V~sV~~s~---~~LaV~ 208 (765)
. |++ .+.|.|||+..-+.--++ .+.+.|..++.|+ .+||.+
T Consensus 134 S--Ga~-------------------------------~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~ 180 (1049)
T KOG0307|consen 134 S--GAD-------------------------------DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASG 180 (1049)
T ss_pred c--cCC-------------------------------CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhcc
Confidence 5 321 368999999874433333 3567899999998 588887
Q ss_pred eCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcC
Q 004255 209 LAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (765)
Q Consensus 209 ~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~s 287 (765)
... ++.|||++.-+.+..+..++.. .....+++.|
T Consensus 181 s~sg~~~iWDlr~~~pii~ls~~~~~-----------~~~S~l~WhP--------------------------------- 216 (1049)
T KOG0307|consen 181 SPSGRAVIWDLRKKKPIIKLSDTPGR-----------MHCSVLAWHP--------------------------------- 216 (1049)
T ss_pred CCCCCceeccccCCCcccccccCCCc-----------cceeeeeeCC---------------------------------
Confidence 765 8999999876544433333220 0001122222
Q ss_pred CCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC-cEEEEec
Q 004255 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFK 366 (765)
Q Consensus 288 p~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~-~~i~~~~ 366 (765)
++.+.++ .. ...+..-.|.+||++.- ..++.++
T Consensus 217 -~~aTql~---------------------------------~A------------s~dd~~PviqlWDlR~assP~k~~~ 250 (1049)
T KOG0307|consen 217 -DHATQLL---------------------------------VA------------SGDDSAPVIQLWDLRFASSPLKILE 250 (1049)
T ss_pred -CCceeee---------------------------------ee------------cCCCCCceeEeecccccCCchhhhc
Confidence 1000000 00 01123447999998754 4677889
Q ss_pred cCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-C
Q 004255 367 AHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-Q 444 (765)
Q Consensus 367 aH~~~IsaLaFSpdG-~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~ 444 (765)
+|...|.+|.|.+.+ .+|+|++.|++ |-+|+..+ | ..++++-+ ...++.++.|.|-. .
T Consensus 251 ~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~t-------g----------Evl~~~p~--~~nW~fdv~w~pr~P~ 310 (1049)
T KOG0307|consen 251 GHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNT-------G----------EVLGELPA--QGNWCFDVQWCPRNPS 310 (1049)
T ss_pred ccccceeeeccCCCCchhhhcccCCCC-eeEecCCC-------c----------eEeeecCC--CCcceeeeeecCCCcc
Confidence 999999999999977 88999999776 88999865 4 57888864 33579999999876 4
Q ss_pred EEEEEeCCCcEEEEeCCCC
Q 004255 445 WIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 445 ~Las~S~dgTVhIwdl~~~ 463 (765)
.+|+++.||.|-||.+...
T Consensus 311 ~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 311 VMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred hhhhheeccceeeeeeecC
Confidence 8999999999999999753
No 110
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.39 E-value=7.7e-12 Score=136.90 Aligned_cols=262 Identities=16% Similarity=0.166 Sum_probs=166.7
Q ss_pred CCeEEEEEecCcEEEEEccCCCcce---Eeee-eccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCC
Q 004255 74 FKQVLLLGYQNGFQVLDVEDASNFN---ELVS-KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQN 149 (765)
Q Consensus 74 ~~~vL~~G~~~G~qVWdv~~~g~~~---ells-~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~ 149 (765)
+-+-+-+|.+++++|||+...++-. .+-. .+|.-++.++++|+ .|.|| |+|+.
T Consensus 430 ~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd------------grtLi--vGGea--------- 486 (705)
T KOG0639|consen 430 PTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD------------GRTLI--VGGEA--------- 486 (705)
T ss_pred CcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCC------------CceEE--ecccc---------
Confidence 3445667778999999996654321 1211 25667888888875 34554 34321
Q ss_pred cCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC---CEEEEEecC--CeEE-EEeCCeEEEEECCCCce
Q 004255 150 RSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS---SVCMVRCSP--RIVA-VGLATQIYCFDALTLEN 223 (765)
Q Consensus 150 ~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s---~V~sV~~s~--~~La-V~~~~~I~iwD~~t~~~ 223 (765)
.+|.||||.+-...-..+..+ ..++++.|+ ++.. ++.++.|.|||+.+-..
T Consensus 487 -----------------------stlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 487 -----------------------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred -----------------------ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 489999998766554444544 457888887 4444 45577899999999988
Q ss_pred eEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhh
Q 004255 224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH 301 (765)
Q Consensus 224 l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~ 301 (765)
.+.+.+|+. +..++.++. .-|=.++-+. ..++||..+..
T Consensus 544 VrqfqGhtD-------------GascIdis~dGtklWTGGlDn-----tvRcWDlregr--------------------- 584 (705)
T KOG0639|consen 544 VRQFQGHTD-------------GASCIDISKDGTKLWTGGLDN-----TVRCWDLREGR--------------------- 584 (705)
T ss_pred eecccCCCC-------------CceeEEecCCCceeecCCCcc-----ceeehhhhhhh---------------------
Confidence 899999886 234566654 1122222221 12345543320
Q ss_pred hhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC
Q 004255 302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG 381 (765)
Q Consensus 302 ~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG 381 (765)
++.+ +.|+. .+. .-...++.+| ++.+...+.|.|-... +....++.-|.+-|.+|.|.+-|
T Consensus 585 --qlqq---hdF~S---QIf----SLg~cP~~dW------lavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 585 --QLQQ---HDFSS---QIF----SLGYCPTGDW------LAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCG 645 (705)
T ss_pred --hhhh---hhhhh---hhe----ecccCCCccc------eeeecccCcEEEEecC-CccceeecccccEEEEEEecccC
Confidence 0000 00000 000 0001112223 2345566777666543 44456788899999999999999
Q ss_pred CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255 382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 382 ~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl 460 (765)
+++++.+. |..++.|.+ |+ | ..+++.. ....|.++..|-|.+||++||.|....||.+
T Consensus 646 kwfvStGk-DnlLnawrt-Py------G----------asiFqsk---E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 646 KWFVSTGK-DNLLNAWRT-PY------G----------ASIFQSK---ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeeecCc-hhhhhhccC-cc------c----------cceeecc---ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999 557999997 43 5 3566654 2356999999999999999999999999876
No 111
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.39 E-value=4.9e-11 Score=124.72 Aligned_cols=274 Identities=15% Similarity=0.145 Sum_probs=173.1
Q ss_pred cccceecccCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCC
Q 004255 42 ASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120 (765)
Q Consensus 42 ~s~~~~~~~~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~ 120 (765)
.+|+..+....+++||.|--+.-|. .+.++.+++.+ .-+||.++ .+.|.-.+.+|.|.|.+|+|.|
T Consensus 134 ~t~~~~lvre~~GHkDGiW~Vaa~~-------tqpi~gtASADhTA~iWs~E-sg~CL~~Y~GH~GSVNsikfh~----- 200 (481)
T KOG0300|consen 134 GTVKFRLVRELEGHKDGIWHVAADS-------TQPICGTASADHTARIWSLE-SGACLATYTGHTGSVNSIKFHN----- 200 (481)
T ss_pred CceeEeehhhhcccccceeeehhhc-------CCcceeecccccceeEEeec-cccceeeecccccceeeEEecc-----
Confidence 3466667767899999986665544 23477777766 48999996 6889999999999999999875
Q ss_pred CCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCC---C-------CCCCEEEEEEC-------CCC
Q 004255 121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNC---V-------NSPTAVRFYSF-------QSH 183 (765)
Q Consensus 121 ~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~---~-------~~p~tV~lWdl-------ktg 183 (765)
++.|++..+||++.--= + ..-.|+.+..+. + -++...+.-|- .-.
T Consensus 201 --------s~~L~lTaSGD~taHIW--~--------~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR 262 (481)
T KOG0300|consen 201 --------SGLLLLTASGDETAHIW--K--------AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR 262 (481)
T ss_pred --------ccceEEEccCCcchHHH--H--------HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee
Confidence 44576665555431000 0 000011000000 0 00111111110 001
Q ss_pred eEEEEEeCC-CCEEEEEe--cC-CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEE
Q 004255 184 CYEHVLRFR-SSVCMVRC--SP-RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAY 259 (765)
Q Consensus 184 ~~v~tL~~~-s~V~sV~~--s~-~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAy 259 (765)
..+..|..+ +.|.+... .. +++..+.+.+-.+||++|++.++.|.+|... + .-+.-.|
T Consensus 263 vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E-L------------tHcstHp----- 324 (481)
T KOG0300|consen 263 VPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSE-L------------THCSTHP----- 324 (481)
T ss_pred eeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchh-c------------cccccCC-----
Confidence 244555544 34544442 23 4555566778999999999998888776641 0 1111100
Q ss_pred ecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCcccccc
Q 004255 260 ASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGR 339 (765)
Q Consensus 260 as~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~ 339 (765)
. ..||
T Consensus 325 --t----------------------------QrLV--------------------------------------------- 329 (481)
T KOG0300|consen 325 --T----------------------------QRLV--------------------------------------------- 329 (481)
T ss_pred --c----------------------------ceEE---------------------------------------------
Confidence 0 0011
Q ss_pred ccccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 004255 340 HAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (765)
Q Consensus 340 ~~~~~~~~dG~V~IwDl~s~-~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s 418 (765)
.+...|-+.++||+... ..+..|++|+..|+++.|.-|. .++++|+ +.+|+|||++.. .
T Consensus 330 ---vTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD-DrTvKvWdLrNM------R--------- 389 (481)
T KOG0300|consen 330 ---VTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD-DRTVKVWDLRNM------R--------- 389 (481)
T ss_pred ---EEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC-CceEEEeeeccc------c---------
Confidence 12346778999999843 4678899999999999998875 5678887 567999999652 1
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 419 ~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
..+.+++ +...+.-++.|.-+..||.--++..|+|||++-.
T Consensus 390 -splATIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 390 -SPLATIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred -Ccceeee---cCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 2556665 3346888999988889999999999999999753
No 112
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=2e-11 Score=127.76 Aligned_cols=249 Identities=18% Similarity=0.195 Sum_probs=160.3
Q ss_pred EEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEE
Q 004255 59 VTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVA 137 (765)
Q Consensus 59 v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~ 137 (765)
-..+.|+++ +..|++|..+| +-|||... -..-++++.|--||.++.++++. | +|+..+
T Consensus 26 a~~~~Fs~~-------G~~lAvGc~nG~vvI~D~~T-~~iar~lsaH~~pi~sl~WS~dg------------r-~LltsS 84 (405)
T KOG1273|consen 26 AECCQFSRW-------GDYLAVGCANGRVVIYDFDT-FRIARMLSAHVRPITSLCWSRDG------------R-KLLTSS 84 (405)
T ss_pred cceEEeccC-------cceeeeeccCCcEEEEEccc-cchhhhhhccccceeEEEecCCC------------C-Eeeeec
Confidence 345667763 56999999998 99999964 55788999999999999999752 3 444322
Q ss_pred cCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecCC---e-EEEEeCCeE
Q 004255 138 GEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR---I-VAVGLATQI 213 (765)
Q Consensus 138 ~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~---~-LaV~~~~~I 213 (765)
. +..|.+||+..|.+++.++|+++|+.+.+.|+ . ||.-....-
T Consensus 85 ~---------------------------------D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp 131 (405)
T KOG1273|consen 85 R---------------------------------DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESP 131 (405)
T ss_pred C---------------------------------CceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCc
Confidence 1 36899999999999999999999999999872 2 222223333
Q ss_pred EEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcc
Q 004255 214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSL 293 (765)
Q Consensus 214 ~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gsl 293 (765)
++-++.+. .+++ |+..++.- ...+++-+
T Consensus 132 ~vi~~s~~--~h~~-----------------------------Lp~d~d~d-------------------ln~sas~~-- 159 (405)
T KOG1273|consen 132 VVIDFSDP--KHSV-----------------------------LPKDDDGD-------------------LNSSASHG-- 159 (405)
T ss_pred EEEEecCC--ceee-----------------------------ccCCCccc-------------------cccccccc--
Confidence 33332221 1111 11111100 00000000
Q ss_pred eeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCC-CCe
Q 004255 294 VARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT-SPI 372 (765)
Q Consensus 294 va~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~-~~I 372 (765)
.+...++ .+.+|...|.+.|+|..+.++++.|+--+ ..|
T Consensus 160 ------------------------------------~fdr~g~----yIitGtsKGkllv~~a~t~e~vas~rits~~~I 199 (405)
T KOG1273|consen 160 ------------------------------------VFDRRGK----YIITGTSKGKLLVYDAETLECVASFRITSVQAI 199 (405)
T ss_pred ------------------------------------cccCCCC----EEEEecCcceEEEEecchheeeeeeeechheee
Confidence 0000111 12356678999999999999999998766 789
Q ss_pred EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 004255 373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (765)
Q Consensus 373 saLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d 452 (765)
..+-|+..|+.|++-+. +.+||+|++..--..+..| .....++++--.....-.+++||.||.|++++|..
T Consensus 200 K~I~~s~~g~~liiNts-DRvIR~ye~~di~~~~r~~--------e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~ 270 (405)
T KOG1273|consen 200 KQIIVSRKGRFLIINTS-DRVIRTYEISDIDDEGRDG--------EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSAR 270 (405)
T ss_pred eEEEEeccCcEEEEecC-CceEEEEehhhhcccCccC--------CcChhHHHHHHHhhhhhhheeecCCccEEEecccc
Confidence 99999999999999998 6789999986311111111 11222333211111234679999999999888754
Q ss_pred -CcEEEEeCCC
Q 004255 453 -GTCHVFVLSP 462 (765)
Q Consensus 453 -gTVhIwdl~~ 462 (765)
..+.||.-..
T Consensus 271 aHaLYIWE~~~ 281 (405)
T KOG1273|consen 271 AHALYIWEKSI 281 (405)
T ss_pred ceeEEEEecCC
Confidence 5688998543
No 113
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.39 E-value=3.9e-11 Score=135.97 Aligned_cols=214 Identities=16% Similarity=0.144 Sum_probs=155.8
Q ss_pred EEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCC
Q 004255 77 VLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGG 155 (765)
Q Consensus 77 vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~ 155 (765)
.|++|..++ +-||.+. ..+-.-+|.+|...|+++..... +.| ++
T Consensus 73 ~l~~g~~D~~i~v~~~~-~~~P~~~LkgH~snVC~ls~~~~--------------~~~--iS------------------ 117 (745)
T KOG0301|consen 73 RLVVGGMDTTIIVFKLS-QAEPLYTLKGHKSNVCSLSIGED--------------GTL--IS------------------ 117 (745)
T ss_pred ceEeecccceEEEEecC-CCCchhhhhccccceeeeecCCc--------------Cce--Ee------------------
Confidence 466677665 7899985 56677889999999999986532 122 33
Q ss_pred cccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC-CeEEEEe-CCeEEEEECCCCceeEEEEecCC
Q 004255 156 VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-RIVAVGL-ATQIYCFDALTLENKFSVLTYPV 232 (765)
Q Consensus 156 ~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~-~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~ 232 (765)
|+|| +|+++|-. ++++.+++.| ..|++|..=+ +.+++|. |..|++|.. ++++.++.+|..
T Consensus 118 ---gSWD----------~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD 180 (745)
T KOG0301|consen 118 ---GSWD----------STAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTD 180 (745)
T ss_pred ---cccc----------cceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccchh
Confidence 3554 69999965 6777778765 6899998655 5555554 557999986 566778877765
Q ss_pred cccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccccee
Q 004255 233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 312 (765)
Q Consensus 233 p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~kt 312 (765)
- + |-||.-+..
T Consensus 181 ~------------------V--RgL~vl~~~------------------------------------------------- 191 (745)
T KOG0301|consen 181 C------------------V--RGLAVLDDS------------------------------------------------- 191 (745)
T ss_pred h------------------e--eeeEEecCC-------------------------------------------------
Confidence 1 0 333332211
Q ss_pred ecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 004255 313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN 392 (765)
Q Consensus 313 ls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt 392 (765)
...++++||.|++||+ +++++....+|++-|.+++..+++.+++|+++|++
T Consensus 192 ----------------------------~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt 242 (745)
T KOG0301|consen 192 ----------------------------HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT 242 (745)
T ss_pred ----------------------------CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCce
Confidence 0124578999999999 78899999999999999998888899999999765
Q ss_pred EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 393 ~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
+|+|+.. .+...+.- ....||++.+=++|. |++|++||.|+||...+.
T Consensus 243 -lriW~~~-------------------e~~q~I~l--PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 243 -LRIWKKD-------------------ECVQVITL--PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred -EEEeecC-------------------ceEEEEec--CccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 9999973 23333321 112599999988886 678889999999988753
No 114
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.38 E-value=3.6e-11 Score=142.09 Aligned_cols=117 Identities=15% Similarity=0.202 Sum_probs=89.6
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255 341 AGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (765)
Q Consensus 341 ~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~ 420 (765)
-+++.+.|++|.|||..+.+.+..|++|.+.|-.+.|+|-|++|||-|. |++|+||++..- |. .
T Consensus 143 ~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsd-Drtikvwrt~dw------~i---------~ 206 (942)
T KOG0973|consen 143 LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSD-DRTLKVWRTSDW------GI---------E 206 (942)
T ss_pred EEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecC-CceEEEEEcccc------ee---------e
Confidence 3557789999999999999999999999999999999999999999998 556999997431 10 1
Q ss_pred EEE-EE-e-cccccccEEEEEEccCCCEEEEEeC----CCcEEEEeCCCCCCCcccccccC
Q 004255 421 HLY-KL-H-RGITSATIQDICFSHYSQWIAIVSS----KGTCHVFVLSPFGGDSGFQTLSS 474 (765)
Q Consensus 421 ~l~-~l-~-rG~~~a~I~slaFSpDg~~Las~S~----dgTVhIwdl~~~gg~~~~~~h~~ 474 (765)
+.. +. . -+. ...+.-++|||||++||+.-. ..++.|.+-.......++-+|..
T Consensus 207 k~It~pf~~~~~-~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~ 266 (942)
T KOG0973|consen 207 KSITKPFEESPL-TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA 266 (942)
T ss_pred EeeccchhhCCC-cceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC
Confidence 111 10 0 011 113677999999999998743 45788888888887888888864
No 115
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.38 E-value=1.1e-10 Score=122.49 Aligned_cols=176 Identities=14% Similarity=0.114 Sum_probs=121.0
Q ss_pred CCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeE-EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 004255 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIV-AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~L-aV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (765)
+++|++||+.+++.+..+.....+..+.+++ +.| +++. ++.|++||+.+++.+..+..+..+
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------------- 75 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP-------------- 75 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc--------------
Confidence 3689999999999999998777777788876 455 4443 468999999998766555332111
Q ss_pred ceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (765)
Q Consensus 248 ~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~ 327 (765)
..+++..+. ..+.
T Consensus 76 -------~~~~~~~~g---------------------------~~l~--------------------------------- 88 (300)
T TIGR03866 76 -------ELFALHPNG---------------------------KILY--------------------------------- 88 (300)
T ss_pred -------cEEEECCCC---------------------------CEEE---------------------------------
Confidence 112222110 0000
Q ss_pred CccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCC
Q 004255 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG 407 (765)
Q Consensus 328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~ 407 (765)
+....++.|++||+.+.+.+..+..+ ..+.+++|+|+|.+|++++.++..+.+||...
T Consensus 89 ---------------~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~------ 146 (300)
T TIGR03866 89 ---------------IANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT------ 146 (300)
T ss_pred ---------------EEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCC------
Confidence 01234679999999998888887643 34678999999999999998777788889743
Q ss_pred CCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCC
Q 004255 408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG 464 (765)
Q Consensus 408 sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~g 464 (765)
+ ..+..+..+ ..+.+++|+|||++|++++ .+++|++||+....
T Consensus 147 -~----------~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 147 -Y----------EIVDNVLVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK 190 (300)
T ss_pred -C----------eEEEEEEcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence 2 233222222 2356799999999986554 59999999998643
No 116
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.37 E-value=3.4e-10 Score=124.51 Aligned_cols=263 Identities=17% Similarity=0.181 Sum_probs=158.2
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEE
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLL 133 (765)
+|..|+.+.|.. .+ . +++|..+| |-||+... ....+....|+|.|.++-|+.+ ..||
T Consensus 245 ekk~Vl~v~F~e--ng-----d-viTgDS~G~i~Iw~~~~-~~~~k~~~aH~ggv~~L~~lr~-------------Gtll 302 (626)
T KOG2106|consen 245 EKKFVLCVTFLE--NG-----D-VITGDSGGNILIWSKGT-NRISKQVHAHDGGVFSLCMLRD-------------GTLL 302 (626)
T ss_pred cceEEEEEEEcC--CC-----C-EEeecCCceEEEEeCCC-ceEEeEeeecCCceEEEEEecC-------------ccEe
Confidence 556677777744 22 2 55666666 89999854 3344444499999999999943 2243
Q ss_pred EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC---CCEEEEEecCCeEEEEeC
Q 004255 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSPRIVAVGLA 210 (765)
Q Consensus 134 avv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~---s~V~sV~~s~~~LaV~~~ 210 (765)
. |+ .+++|..|| ..-+.++.++.+ ++|..|+-++.-|.+|..
T Consensus 303 -S--Gg-------------------------------KDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTt 347 (626)
T KOG2106|consen 303 -S--GG-------------------------------KDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTT 347 (626)
T ss_pred -e--cC-------------------------------ccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeec
Confidence 2 32 258999999 334445555555 588988887744666554
Q ss_pred CeEEEE-ECCCCceeEEEE--ecCCcccCCCCccccccccceeEEcc--ceEEEecCCc--eecCCccccCCCCCC-CCC
Q 004255 211 TQIYCF-DALTLENKFSVL--TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTL--LLSNSGRLSPQNLTP-SGV 282 (765)
Q Consensus 211 ~~I~iw-D~~t~~~l~tl~--t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~--~~~~~G~~s~~~lt~-~~~ 282 (765)
..--+. .+.+ -+++. +|.. ...-+|..| ..++.++.+. .+++.-+..|..... +..
T Consensus 348 rN~iL~Gt~~~---~f~~~v~gh~d-------------elwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~ 411 (626)
T KOG2106|consen 348 RNFILQGTLEN---GFTLTVQGHGD-------------ELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAE 411 (626)
T ss_pred cceEEEeeecC---CceEEEEeccc-------------ceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCcee
Confidence 332222 2222 22222 2222 012244444 3444444332 222211122222111 222
Q ss_pred CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE
Q 004255 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (765)
Q Consensus 283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i 362 (765)
...++|+| .++.+...|...|.|.++...+
T Consensus 412 ~~~fhpsg--------------------------------------------------~va~Gt~~G~w~V~d~e~~~lv 441 (626)
T KOG2106|consen 412 CADFHPSG--------------------------------------------------VVAVGTATGRWFVLDTETQDLV 441 (626)
T ss_pred EeeccCcc--------------------------------------------------eEEEeeccceEEEEecccceeE
Confidence 22222222 1234556788889999985544
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (765)
Q Consensus 363 ~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD 442 (765)
..-.. ..++++++|+|+|.+||.||.|+ .|.||.+... | ....++.+ .+.+.|+.+.||+|
T Consensus 442 ~~~~d-~~~ls~v~ysp~G~~lAvgs~d~-~iyiy~Vs~~------g----------~~y~r~~k-~~gs~ithLDwS~D 502 (626)
T KOG2106|consen 442 TIHTD-NEQLSVVRYSPDGAFLAVGSHDN-HIYIYRVSAN------G----------RKYSRVGK-CSGSPITHLDWSSD 502 (626)
T ss_pred EEEec-CCceEEEEEcCCCCEEEEecCCC-eEEEEEECCC------C----------cEEEEeee-ecCceeEEeeecCC
Confidence 43334 88999999999999999999966 5999998542 3 23333322 22368999999999
Q ss_pred CCEEEEEeCCCcEEEEe
Q 004255 443 SQWIAIVSSKGTCHVFV 459 (765)
Q Consensus 443 g~~Las~S~dgTVhIwd 459 (765)
+++|.+-|-|-.+-.|+
T Consensus 503 s~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 503 SQFLVSNSGDYEILYWK 519 (626)
T ss_pred CceEEeccCceEEEEEc
Confidence 99999999999999993
No 117
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=7.6e-13 Score=150.02 Aligned_cols=173 Identities=17% Similarity=0.226 Sum_probs=134.7
Q ss_pred CEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 004255 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (765)
.++-||....-..+..|..+ ++|.+|.|+. .+|+.|.. +.|++||+...+.+++|.+|..+. .
T Consensus 50 ~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~-------------~ 116 (825)
T KOG0267|consen 50 EKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNI-------------T 116 (825)
T ss_pred eeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCc-------------c
Confidence 56778888766666677765 6999999987 56666554 589999999999989988876631 2
Q ss_pred eeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCC
Q 004255 249 PMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (765)
Q Consensus 249 ~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~ 326 (765)
.++|.| .|.
T Consensus 117 sv~f~P~~~~~--------------------------------------------------------------------- 127 (825)
T KOG0267|consen 117 SVDFHPYGEFF--------------------------------------------------------------------- 127 (825)
T ss_pred eeeeccceEEe---------------------------------------------------------------------
Confidence 233433 000
Q ss_pred CCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC
Q 004255 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 406 (765)
Q Consensus 327 ~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~ 406 (765)
+.+..|+.+.+||.....++..+++|...|..+.|+|+|++++.+++ +.+++|||...
T Consensus 128 ----------------a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-d~tvki~d~~a----- 185 (825)
T KOG0267|consen 128 ----------------ASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-DNTVKIWDLTA----- 185 (825)
T ss_pred ----------------ccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC-cceeeeecccc-----
Confidence 12346778899999999999999999999999999999999999998 66799999843
Q ss_pred CCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 407 ~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
| ..+.+|. + +.+.|.++.|+|..-.|+.||.|+|+++||++++
T Consensus 186 --g----------k~~~ef~-~-~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 186 --G----------KLSKEFK-S-HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred --c----------ccccccc-c-ccccccccccCchhhhhccCCCCceeeeecccee
Confidence 3 2444553 2 3457899999999999999999999999999954
No 118
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.37 E-value=1.7e-11 Score=128.30 Aligned_cols=255 Identities=14% Similarity=0.167 Sum_probs=181.5
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeee--------eccCCEEEEEEecCCCCCCCCCC
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVS--------KRDGPVSFLQMQPFPVKDDGCEG 125 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells--------~~dg~V~~v~~lP~p~~~~~~d~ 125 (765)
.|..+-+|.|- .+++.|++|+-+| |.|||.. +|++++-|. -+|.+|.|+.|+.+
T Consensus 212 ~KSh~EcA~FS-------PDgqyLvsgSvDGFiEVWny~-~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD--------- 274 (508)
T KOG0275|consen 212 QKSHVECARFS-------PDGQYLVSGSVDGFIEVWNYT-TGKLRKDLKYQAQDNFMMMDDAVLCISFSRD--------- 274 (508)
T ss_pred cccchhheeeC-------CCCceEeeccccceeeeehhc-cchhhhhhhhhhhcceeecccceEEEeeccc---------
Confidence 34445555553 3589999999999 5999994 677776554 34578888887643
Q ss_pred ccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe--CCCCEEEEEecC-
Q 004255 126 FRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR--FRSSVCMVRCSP- 202 (765)
Q Consensus 126 f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~--~~s~V~sV~~s~- 202 (765)
.-+||. |. -+++|++|-+.+|.|++.++ +...|.++.|++
T Consensus 275 ----sEMlAs--Gs-------------------------------qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD 317 (508)
T KOG0275|consen 275 ----SEMLAS--GS-------------------------------QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD 317 (508)
T ss_pred ----HHHhhc--cC-------------------------------cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC
Confidence 125553 20 14799999999999999886 345899999987
Q ss_pred --CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCC
Q 004255 203 --RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (765)
Q Consensus 203 --~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~ 280 (765)
++|..+.+..|+|.-+..++++..+++|..- + +...| ..+
T Consensus 318 ~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy---------v----n~a~f-------t~d------------------ 359 (508)
T KOG0275|consen 318 NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY---------V----NEATF-------TDD------------------ 359 (508)
T ss_pred cchhhcccccceEEEeccccchhHHHhcCcccc---------c----cceEE-------cCC------------------
Confidence 6788888889999999999999988887651 0 01111 110
Q ss_pred CCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 004255 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (765)
Q Consensus 281 ~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~ 360 (765)
|. .+.+++.||+|+||+..+.+
T Consensus 360 ---------G~-------------------------------------------------~iisaSsDgtvkvW~~Ktte 381 (508)
T KOG0275|consen 360 ---------GH-------------------------------------------------HIISASSDGTVKVWHGKTTE 381 (508)
T ss_pred ---------CC-------------------------------------------------eEEEecCCccEEEecCcchh
Confidence 00 11245679999999999999
Q ss_pred EEEEecc--CCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-ccEEE
Q 004255 361 IISQFKA--HTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-ATIQD 436 (765)
Q Consensus 361 ~i~~~~a--H~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~-a~I~s 436 (765)
++.+|+. ..-+|+.+-.=|. -..++.|-. .+++.|-++. | +.+..+..|... +...+
T Consensus 382 C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr-sntv~imn~q--------G----------QvVrsfsSGkREgGdFi~ 442 (508)
T KOG0275|consen 382 CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR-SNTVYIMNMQ--------G----------QVVRSFSSGKREGGDFIN 442 (508)
T ss_pred hhhhccCCCCcccceeEEEcCCCCceEEEEcC-CCeEEEEecc--------c----------eEEeeeccCCccCCceEE
Confidence 9999984 4568888777664 456666766 5568887773 4 345555444322 34667
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccCCCCC
Q 004255 437 ICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478 (765)
Q Consensus 437 laFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~~~~~ 478 (765)
++.||.|.|+.+.+.|+.+.-|.+...+-+..+.-|...+.|
T Consensus 443 ~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIG 484 (508)
T KOG0275|consen 443 AILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIG 484 (508)
T ss_pred EEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccc
Confidence 889999999999999999999998877667666666544433
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.37 E-value=1.3e-10 Score=122.02 Aligned_cols=212 Identities=13% Similarity=0.106 Sum_probs=131.1
Q ss_pred CCEEEEEECCCCeEEEEEeC-CCCEEEEEecC-----CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 004255 172 PTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP-----RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~-----~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~ 245 (765)
+-+|+|||+++...+..|-. .+.|.++.|.+ .+|..+.+++|.+|++...+++.+++.|.-.
T Consensus 62 DetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~------------ 129 (362)
T KOG0294|consen 62 DETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ------------ 129 (362)
T ss_pred CCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc------------
Confidence 46999999999988888765 46899999876 3455556678999999999999999987651
Q ss_pred ccceeEEcc-ceEEE--ecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCC
Q 004255 246 GYGPMAVGP-RWLAY--ASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 322 (765)
Q Consensus 246 ~~~~~Alsp-r~LAy--as~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p 322 (765)
++-+++.| .-||. +++..+ +.|...+.. +.++ ..|..+..
T Consensus 130 -Vt~lsiHPS~KLALsVg~D~~l------r~WNLV~Gr----------~a~v----------------~~L~~~at---- 172 (362)
T KOG0294|consen 130 -VTDLSIHPSGKLALSVGGDQVL------RTWNLVRGR----------VAFV----------------LNLKNKAT---- 172 (362)
T ss_pred -cceeEecCCCceEEEEcCCcee------eeehhhcCc----------ccee----------------eccCCcce----
Confidence 34567777 33333 343321 112211110 0000 01111100
Q ss_pred CCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 004255 323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 402 (765)
Q Consensus 323 ~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~ 402 (765)
.+.+.+.+.. ........|-||.+.+-++...+.-. ..+.++.|.. +..|++|.+++ .|++||...
T Consensus 173 -----~v~w~~~Gd~-----F~v~~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~-~~~L~vG~d~~-~i~~~D~ds- 238 (362)
T KOG0294|consen 173 -----LVSWSPQGDH-----FVVSGRNKIDIYQLDNASVFREIENP-KRILCATFLD-GSELLVGGDNE-WISLKDTDS- 238 (362)
T ss_pred -----eeEEcCCCCE-----EEEEeccEEEEEecccHhHhhhhhcc-ccceeeeecC-CceEEEecCCc-eEEEeccCC-
Confidence 0111111100 01234456778887765544433322 4477788864 55677888755 599999743
Q ss_pred cccCCCCCCccccCCcceEEEEEecccccccEEEEEE--ccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255 403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--SHYSQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 403 ~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaF--SpDg~~Las~S~dgTVhIwdl~~~g 464 (765)
+ .++..+. + |.+.|-++.+ .|++.+|+++|+||.|+|||++...
T Consensus 239 ------~----------~~~~~~~-A-H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 239 ------D----------TPLTEFL-A-HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred ------C----------ccceeee-c-chhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 2 3555554 3 3467888884 5789999999999999999998653
No 120
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=3.2e-10 Score=114.10 Aligned_cols=247 Identities=17% Similarity=0.235 Sum_probs=167.7
Q ss_pred CCCCCCcEEEEEEeeccCCCC-------CCCeEEEEEecC-cEEEEEccCCCcce----------Eeee----eccCCEE
Q 004255 52 SEDLKDQVTWAGFDRLEYGPS-------VFKQVLLLGYQN-GFQVLDVEDASNFN----------ELVS----KRDGPVS 109 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~-------~~~~vL~~G~~~-G~qVWdv~~~g~~~----------ells----~~dg~V~ 109 (765)
.|+++++-.|...+.|+.... ..+.+.++|.+. .|+|-.....-.++ .++. .|.|.+.
T Consensus 14 eedd~~k~~f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiy 93 (350)
T KOG0641|consen 14 EEDDKEKKHFEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIY 93 (350)
T ss_pred ccccccccceEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEE
Confidence 567788888888888775432 357788999876 58887653321111 1222 2347788
Q ss_pred EEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC--CCeEE-
Q 004255 110 FLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ--SHCYE- 186 (765)
Q Consensus 110 ~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlk--tg~~v- 186 (765)
+.+++|.. .|||. |. . +++|++.-+. |.+.+
T Consensus 94 c~~ws~~g-------------eliat--gs---------------------n----------dk~ik~l~fn~dt~~~~g 127 (350)
T KOG0641|consen 94 CTAWSPCG-------------ELIAT--GS---------------------N----------DKTIKVLPFNADTCNATG 127 (350)
T ss_pred EEEecCcc-------------CeEEe--cC---------------------C----------CceEEEEecccccccccC
Confidence 88888742 37654 21 1 3567766543 32222
Q ss_pred EEEeC---CCCEEEEEecC------CeEEEEeCC--eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccc
Q 004255 187 HVLRF---RSSVCMVRCSP------RIVAVGLAT--QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPR 255 (765)
Q Consensus 187 ~tL~~---~s~V~sV~~s~------~~LaV~~~~--~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr 255 (765)
+.++| .+.|.+++|-. .+|+.+..+ +||+-|..+++-++-+.+|.. ..+++
T Consensus 128 ~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg---------------hilal--- 189 (350)
T KOG0641|consen 128 HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG---------------HILAL--- 189 (350)
T ss_pred cceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc---------------cEEEE---
Confidence 33444 46899998842 577775543 699989888876666655543 11222
Q ss_pred eEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCcc
Q 004255 256 WLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVW 335 (765)
Q Consensus 256 ~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~ 335 (765)
|. | ++
T Consensus 190 ---ys-------------w---------------------------------------n~-------------------- 194 (350)
T KOG0641|consen 190 ---YS-------------W---------------------------------------NG-------------------- 194 (350)
T ss_pred ---EE-------------e---------------------------------------cC--------------------
Confidence 11 0 00
Q ss_pred ccccccccccCCCCeEEEEECCCCcEEEEecc--C-----CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 004255 336 KVGRHAGADMDNAGIVVVKDFVTRAIISQFKA--H-----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (765)
Q Consensus 336 ~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a--H-----~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~s 408 (765)
-..+++++|.+|+.||++-..++.++.. | .+.|.+++.+|.|++||++-.| ....+|||+-
T Consensus 195 ----~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d-ssc~lydirg------- 262 (350)
T KOG0641|consen 195 ----AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD-SSCMLYDIRG------- 262 (350)
T ss_pred ----cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCC-CceEEEEeeC-------
Confidence 0123567899999999998888887742 3 3679999999999999999884 5689999963
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 409 G~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
| +.+..++- +.+.|.|+.|||...||.++|-|..|++=|+.
T Consensus 263 ~----------r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 263 G----------RMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred C----------ceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 3 56666653 55789999999999999999999999998875
No 121
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.36 E-value=1.5e-11 Score=134.69 Aligned_cols=112 Identities=22% Similarity=0.367 Sum_probs=87.2
Q ss_pred cccCCCCeEEEEECCCCcEEEEe-ccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255 343 ADMDNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~~~i~~~-~aH~~~IsaLaFSpdG-~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~ 420 (765)
..++.+|.|.|||+....++..+ ++|..|...+||+|.. .+||+.+. |+.|.+||+... .
T Consensus 181 ~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~-Dkki~~yD~~s~-----------------~ 242 (673)
T KOG4378|consen 181 SIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY-DKKINIYDIRSQ-----------------A 242 (673)
T ss_pred EeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc-cceEEEeecccc-----------------c
Confidence 35678999999999988887775 6899999999999965 56788888 566999998531 1
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccc-ccccCC
Q 004255 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF-QTLSSQ 475 (765)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~-~~h~~~ 475 (765)
....|. ..++...++|+++|.+|++|+.+|.|..||+...+.++.. ..|...
T Consensus 243 s~~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s 295 (673)
T KOG4378|consen 243 STDRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS 295 (673)
T ss_pred ccceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccc
Confidence 111121 1246889999999999999999999999999988877764 466543
No 122
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.36 E-value=2e-11 Score=127.64 Aligned_cols=239 Identities=15% Similarity=0.140 Sum_probs=150.1
Q ss_pred EECCCCeEEEEE----eC-CCCEEEEEecC--CeEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 004255 178 YSFQSHCYEHVL----RF-RSSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 249 (765)
Q Consensus 178 Wdlktg~~v~tL----~~-~s~V~sV~~s~--~~LaV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~ 249 (765)
=.++++.....+ .. ...|+.|+... .++..+.. .+-.||.+++++|+.+..+|.. .+++
T Consensus 129 ssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G-------------SVNs 195 (481)
T KOG0300|consen 129 SSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG-------------SVNS 195 (481)
T ss_pred eeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeeccccc-------------ceee
Confidence 345666544443 33 46899998765 46666554 4699999999999998888765 2567
Q ss_pred eEEcc-c-eEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhh-hhh--hc------cc--c---eee
Q 004255 250 MAVGP-R-WLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS-KQF--AA------GL--S---KTL 313 (765)
Q Consensus 250 ~Alsp-r-~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~-k~l--a~------G~--~---ktl 313 (765)
+.|.+ + +++.++.+. ..| .|+..-...++....|.+-+- ..-.|.+ ++. .. |. . -.|
T Consensus 196 ikfh~s~~L~lTaSGD~-taH----IW~~av~~~vP~~~a~~~hSs--EeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l 268 (481)
T KOG0300|consen 196 IKFHNSGLLLLTASGDE-TAH----IWKAAVNWEVPSNNAPSDHSS--EEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL 268 (481)
T ss_pred EEeccccceEEEccCCc-chH----HHHHhhcCcCCCCCCCCCCCc--hhhhhcccccccccccccccCCceeeeeeeee
Confidence 88888 3 444443331 111 222111111111111111000 0000000 000 00 00 0 011
Q ss_pred cccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCE
Q 004255 314 SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN 393 (765)
Q Consensus 314 s~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~ 393 (765)
+++. ......+|-.++.+..++.-|.+..+||++++.++..|.+|...++.++-+|..++++|+|. +++
T Consensus 269 tgH~----------~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr-DtT 337 (481)
T KOG0300|consen 269 TGHR----------AVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR-DTT 337 (481)
T ss_pred eccc----------cceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc-Cce
Confidence 2211 11122356566666678888999999999999999999999999999999999999999999 677
Q ss_pred EEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255 394 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 394 IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~ 466 (765)
+|+||.++. .+.+..| .|++ ..|+++.|.-|.+ +++||+|.||+|||+.....+
T Consensus 338 FRLWDFRea----------------I~sV~VF-QGHt-dtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsp 391 (481)
T KOG0300|consen 338 FRLWDFREA----------------IQSVAVF-QGHT-DTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSP 391 (481)
T ss_pred eEeccchhh----------------cceeeee-cccc-cceeEEEEecCCc-eeecCCCceEEEeeeccccCc
Confidence 999999752 0233344 4654 5799999998864 789999999999999876543
No 123
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.36 E-value=1.2e-10 Score=126.27 Aligned_cols=241 Identities=18% Similarity=0.227 Sum_probs=163.7
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
..++.-.|+|+.|.+. ...++++..+ .|+||.+.. .....++.-|+++|..+..-|+.
T Consensus 257 ~~Gh~kki~~v~~~~~-------~~~v~~aSad~~i~vws~~~-~s~~~~~~~h~~~V~~ls~h~tg------------- 315 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHKD-------LDTVITASADEIIRVWSVPL-SSEPTSSRPHEEPVTGLSLHPTG------------- 315 (506)
T ss_pred ccCcceEEEEEEeccc-------hhheeecCCcceEEeecccc-ccCccccccccccceeeeeccCC-------------
Confidence 4566677888888762 2345566665 599999954 44666778899999999998753
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-C--CEEEEEecCC--eE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-S--SVCMVRCSPR--IV 205 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s--~V~sV~~s~~--~L 205 (765)
..|+..+ .+++..|.|.++|.++...... + .+.+..|.|. ++
T Consensus 316 eYllsAs---------------------------------~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLif 362 (506)
T KOG0289|consen 316 EYLLSAS---------------------------------NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIF 362 (506)
T ss_pred cEEEEec---------------------------------CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEE
Confidence 2554321 1368899999999988777664 3 4689999984 44
Q ss_pred EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCC
Q 004255 206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (765)
Q Consensus 206 aV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~ 284 (765)
+.|. ++.|+|||+........+.+|..| . +-|+|+.+
T Consensus 363 gtgt~d~~vkiwdlks~~~~a~Fpght~~-------------v-------k~i~FsEN---------------------- 400 (506)
T KOG0289|consen 363 GTGTPDGVVKIWDLKSQTNVAKFPGHTGP-------------V-------KAISFSEN---------------------- 400 (506)
T ss_pred eccCCCceEEEEEcCCccccccCCCCCCc-------------e-------eEEEeccC----------------------
Confidence 4554 457999999877655554444442 1 22333321
Q ss_pred CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE
Q 004255 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ 364 (765)
Q Consensus 285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~ 364 (765)
+|+ ++.+..|+.|++||++..+...+
T Consensus 401 ------------------------------GY~------------------------Lat~add~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 401 ------------------------------GYW------------------------LATAADDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred ------------------------------ceE------------------------EEEEecCCeEEEEEehhhcccce
Confidence 111 23445678899999998887777
Q ss_pred eccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 004255 365 FKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (765)
Q Consensus 365 ~~aH-~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg 443 (765)
|.-. ..+|.+++|+++|++|+.++. .++||-.... +-.| .++.++. .+.+..+.+.|..+.
T Consensus 427 ~~l~~~~~v~s~~fD~SGt~L~~~g~---~l~Vy~~~k~---------~k~W----~~~~~~~--~~sg~st~v~Fg~~a 488 (506)
T KOG0289|consen 427 IQLDEKKEVNSLSFDQSGTYLGIAGS---DLQVYICKKK---------TKSW----TEIKELA--DHSGLSTGVRFGEHA 488 (506)
T ss_pred eeccccccceeEEEcCCCCeEEeecc---eeEEEEEecc---------cccc----eeeehhh--hcccccceeeecccc
Confidence 7643 348999999999999999855 4777765320 0112 2333332 122456789999999
Q ss_pred CEEEEEeCCCcEEEEeC
Q 004255 444 QWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 444 ~~Las~S~dgTVhIwdl 460 (765)
++|+++|.|..++|+.+
T Consensus 489 q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 489 QYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEeeccchhheEEeec
Confidence 99999999999999875
No 124
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.34 E-value=3.8e-11 Score=124.75 Aligned_cols=110 Identities=16% Similarity=0.257 Sum_probs=81.5
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCE-EEEEEcCCCEEEEEeCCCCcccCCCCC-CccccCCcceEEE
Q 004255 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTL-LVTASVYGNNINIFRIMPSCMRSGSGN-HKYDWNSSHVHLY 423 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~l-LATaS~dGt~IrVWdi~~~~~~~~sG~-~~~~~~~s~~~l~ 423 (765)
..+-.|++.|+.+|..-++|.+|...|.++.|+|...+ |||||.||. ||+||++.. +|. ...|.... ....
T Consensus 165 tr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~-irlWDiRra-----sgcf~~lD~hn~-k~~p 237 (397)
T KOG4283|consen 165 TRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA-IRLWDIRRA-----SGCFRVLDQHNT-KRPP 237 (397)
T ss_pred cCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce-EEEEEeecc-----cceeEEeecccC-ccCc
Confidence 34557999999999999999999999999999998765 799999775 999999752 121 00010000 0111
Q ss_pred EEe-cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 424 KLH-RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 424 ~l~-rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
.++ +-.+...|..+||+.||++|++.+.|..+++|+...
T Consensus 238 ~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 238 ILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 111 223445799999999999999999999999999764
No 125
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.33 E-value=2.2e-11 Score=130.98 Aligned_cols=243 Identities=14% Similarity=0.139 Sum_probs=152.6
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeec-cCCEEEEEEecCCCCCCCCCCcccc
Q 004255 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKR-DGPVSFLQMQPFPVKDDGCEGFRKL 129 (765)
Q Consensus 51 ~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~-dg~V~~v~~lP~p~~~~~~d~f~~s 129 (765)
..+++...|.+..|-. .++.+|++|.+.-+.+||++ +|+++..+... .-.|.++++.|+. |+
T Consensus 264 tlvgh~~~V~yi~wSP------DdryLlaCg~~e~~~lwDv~-tgd~~~~y~~~~~~S~~sc~W~pDg--------~~-- 326 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSP------DDRYLLACGFDEVLSLWDVD-TGDLRHLYPSGLGFSVSSCAWCPDG--------FR-- 326 (519)
T ss_pred eeecccCceEEEEECC------CCCeEEecCchHheeeccCC-cchhhhhcccCcCCCcceeEEccCC--------ce--
Confidence 3566778888888854 24788888888889999995 67777777654 4578899999863 32
Q ss_pred CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CCEEEEEecC---Ce
Q 004255 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP---RI 204 (765)
Q Consensus 130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~--s~V~sV~~s~---~~ 204 (765)
+ |+|. .++++.-||+. |+.+...+.- -.|+++++.. .+
T Consensus 327 --~---V~Gs-------------------------------~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~v 369 (519)
T KOG0293|consen 327 --F---VTGS-------------------------------PDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYV 369 (519)
T ss_pred --e---EecC-------------------------------CCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEE
Confidence 2 3331 24789999995 5555555542 3788988775 46
Q ss_pred EEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCceecCCccccCCCCCCCCCC
Q 004255 205 VAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTLLLSNSGRLSPQNLTPSGVS 283 (765)
Q Consensus 205 LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp-r~LAyas~~~~~~~~G~~s~~~lt~~~~s 283 (765)
|+++.+..|++|+..+..+...+.++.. ..++.+|- .-+|...- ...+...|+.....
T Consensus 370 l~v~~d~~i~l~~~e~~~dr~lise~~~--------------its~~iS~d~k~~LvnL----~~qei~LWDl~e~~--- 428 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARVDRGLISEEQP--------------ITSFSISKDGKLALVNL----QDQEIHLWDLEENK--- 428 (519)
T ss_pred EEEecccceeeechhhhhhhccccccCc--------------eeEEEEcCCCcEEEEEc----ccCeeEEeecchhh---
Confidence 6677778899999988765544433211 23455544 11222110 01122234322110
Q ss_pred CCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEE
Q 004255 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS 363 (765)
Q Consensus 284 ~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~ 363 (765)
+|-+| .|. +.+.|.-. .+-+ ..+-.-+++|+.|+.|+||+..+++.+.
T Consensus 429 ---------lv~kY---------~Gh--kq~~fiIr-SCFg-----------g~~~~fiaSGSED~kvyIWhr~sgkll~ 476 (519)
T KOG0293|consen 429 ---------LVRKY---------FGH--KQGHFIIR-SCFG-----------GGNDKFIASGSEDSKVYIWHRISGKLLA 476 (519)
T ss_pred ---------HHHHh---------hcc--cccceEEE-eccC-----------CCCcceEEecCCCceEEEEEccCCceeE
Confidence 00000 011 00111000 0000 0000124578899999999999999999
Q ss_pred EeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCC
Q 004255 364 QFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMP 401 (765)
Q Consensus 364 ~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~ 401 (765)
.+.||...|+|++++| +-.+||+||+||+ ||||-..+
T Consensus 477 ~LsGHs~~vNcVswNP~~p~m~ASasDDgt-IRIWg~~~ 514 (519)
T KOG0293|consen 477 VLSGHSKTVNCVSWNPADPEMFASASDDGT-IRIWGPSD 514 (519)
T ss_pred eecCCcceeeEEecCCCCHHHhhccCCCCe-EEEecCCc
Confidence 9999999999999999 4568999999775 99998743
No 126
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.33 E-value=1.3e-11 Score=141.23 Aligned_cols=224 Identities=15% Similarity=0.208 Sum_probs=149.5
Q ss_pred CeEEEEEecCc-EEEEEccCC--CcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcC
Q 004255 75 KQVLLLGYQNG-FQVLDVEDA--SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (765)
Q Consensus 75 ~~vL~~G~~~G-~qVWdv~~~--g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~ 151 (765)
.++|+++..+| |-|||+... .....++..|.-.|..+.|.+ ..|-+++ +|+ |
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~-------------tep~ili-SGS--------Q--- 154 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHS-------------TEPNILI-SGS--------Q--- 154 (839)
T ss_pred hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeecc-------------CCccEEE-ecC--------C---
Confidence 57999999998 899999652 344557888998999998774 2344443 331 2
Q ss_pred CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---CeEEEEeCC-eEEEEECCCCc-eeE
Q 004255 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAVGLAT-QIYCFDALTLE-NKF 225 (765)
Q Consensus 152 ~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~~LaV~~~~-~I~iwD~~t~~-~l~ 225 (765)
+++|++||++..+-+.++... ..|.+|.|+| ..++.+.++ .+.+||++... +.+
T Consensus 155 --------------------Dg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~ 214 (839)
T KOG0269|consen 155 --------------------DGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK 214 (839)
T ss_pred --------------------CceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH
Confidence 479999999988877777665 4899999998 567777664 69999987543 222
Q ss_pred EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhh
Q 004255 226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (765)
Q Consensus 226 tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~l 305 (765)
.+..|..| .-.+.+.|
T Consensus 215 k~~AH~Gp-------------V~c~nwhP--------------------------------------------------- 230 (839)
T KOG0269|consen 215 KLTAHNGP-------------VLCLNWHP--------------------------------------------------- 230 (839)
T ss_pred HhhcccCc-------------eEEEeecC---------------------------------------------------
Confidence 22233322 11122222
Q ss_pred hcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc-CCCCeEEEEECCCCC-E
Q 004255 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA-HTSPISALCFDPSGT-L 383 (765)
Q Consensus 306 a~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a-H~~~IsaLaFSpdG~-l 383 (765)
++.-+++++.|++|+|||..+.+.-..+.- -..||.+|+|-|.-+ +
T Consensus 231 --------------------------------nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~h 278 (839)
T KOG0269|consen 231 --------------------------------NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYH 278 (839)
T ss_pred --------------------------------CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccch
Confidence 111234556789999999987543222221 246999999999755 5
Q ss_pred EEEEEc-CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCcEEE
Q 004255 384 LVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHV 457 (765)
Q Consensus 384 LATaS~-dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp-Dg~~Las~S~dgTVhI 457 (765)
|||+|. +++.|+|||++..+ .+-..+. .+...++.++|-. |-..|.+++.||||..
T Consensus 279 LAtcsmv~dtsV~VWDvrRPY----------------IP~~t~~--eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 279 LATCSMVVDTSVHVWDVRRPY----------------IPYATFL--EHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred hhhhhccccceEEEEeecccc----------------ccceeee--ccCccccceeccCCCceeeEeecCccHHHH
Confidence 788764 57889999996421 1222232 1334688899964 6678899999999743
No 127
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.32 E-value=7.7e-11 Score=128.53 Aligned_cols=217 Identities=16% Similarity=0.188 Sum_probs=149.1
Q ss_pred CCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcC
Q 004255 73 VFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (765)
Q Consensus 73 ~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~ 151 (765)
.++++|++|..+. |+|||++ +.+-...+.+|-+.|..+.|--.| + .| .+.+
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~-t~ehv~~~~ghr~~V~~L~fr~gt-----------~-~l-ys~s-------------- 263 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCD-TLEHVKVFKGHRGAVSSLAFRKGT-----------S-EL-YSAS-------------- 263 (479)
T ss_pred CCCcEEEecCCCceEEEecCc-ccchhhcccccccceeeeeeecCc-----------c-ce-eeee--------------
Confidence 4688999998875 8999996 566777899999999999876322 1 23 3322
Q ss_pred CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEE
Q 004255 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSV 227 (765)
Q Consensus 152 ~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~--~~LaV~-~~~~I~iwD~~t~~~l~tl 227 (765)
.+++|++|++..-.++.++-. ++.|.+|.... +.+.|| -|.++++|++..-. ....
T Consensus 264 -------------------~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlif 323 (479)
T KOG0299|consen 264 -------------------ADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIF 323 (479)
T ss_pred -------------------cCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeee
Confidence 247999999999999988864 57899998654 566666 46789999983211 1111
Q ss_pred EecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhc
Q 004255 228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (765)
Q Consensus 228 ~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~ 307 (765)
..+.. ++..+|+-++.-
T Consensus 324 rg~~~--------------------sidcv~~In~~H------------------------------------------- 340 (479)
T KOG0299|consen 324 RGGEG--------------------SIDCVAFINDEH------------------------------------------- 340 (479)
T ss_pred eCCCC--------------------CeeeEEEecccc-------------------------------------------
Confidence 11100 001122222210
Q ss_pred ccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec-cC-----------CCCeEEE
Q 004255 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AH-----------TSPISAL 375 (765)
Q Consensus 308 G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~-aH-----------~~~IsaL 375 (765)
.++++.+|.|.+|++...+++.+.+ +| ...|++|
T Consensus 341 ----------------------------------fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsl 386 (479)
T KOG0299|consen 341 ----------------------------------FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSL 386 (479)
T ss_pred ----------------------------------eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeee
Confidence 1245678999999999988877664 44 1278999
Q ss_pred EECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 004255 376 CFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS 451 (765)
Q Consensus 376 aFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~ 451 (765)
+.-|...+||++|.+|. ||||-+.+.. .....++.+. -..-|++|+|+++|++|++|-.
T Consensus 387 a~i~~sdL~asGS~~G~-vrLW~i~~g~-------------r~i~~l~~ls---~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 387 AVIPGSDLLASGSWSGC-VRLWKIEDGL-------------RAINLLYSLS---LVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred EecccCceEEecCCCCc-eEEEEecCCc-------------cccceeeecc---cccEEEEEEEccCCCEEEEecc
Confidence 99999999999999775 9999997621 0114556654 2346999999999998877743
No 128
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.32 E-value=3.6e-11 Score=125.52 Aligned_cols=259 Identities=18% Similarity=0.270 Sum_probs=164.2
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC---CCc--------------ceEeeeeccCCEEEEEEecC
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED---ASN--------------FNELVSKRDGPVSFLQMQPF 116 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~---~g~--------------~~ells~~dg~V~~v~~lP~ 116 (765)
||.-+..+.|.. ++.++++|..+. |+|+|++- ..+ +.++|=.|-.+|..+.|-|.
T Consensus 111 HK~~cR~aafs~-------DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 111 HKSPCRAAAFSP-------DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred cccceeeeeeCC-------CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 455566666644 588999999985 99999971 011 23333344567777777763
Q ss_pred CCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE---eCCC
Q 004255 117 PVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL---RFRS 193 (765)
Q Consensus 117 p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL---~~~s 193 (765)
..+|+. +. -+++|+|+|+..-..-+-+ .--.
T Consensus 184 -------------e~ILiS--~s-------------------------------rD~tvKlFDfsK~saKrA~K~~qd~~ 217 (430)
T KOG0640|consen 184 -------------ETILIS--GS-------------------------------RDNTVKLFDFSKTSAKRAFKVFQDTE 217 (430)
T ss_pred -------------hheEEe--cc-------------------------------CCCeEEEEecccHHHHHHHHHhhccc
Confidence 235543 21 1479999999754433333 3345
Q ss_pred CEEEEEecC--CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCc
Q 004255 194 SVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSG 270 (765)
Q Consensus 194 ~V~sV~~s~--~~LaV~~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G 270 (765)
+|.+|.|.| .+|++|.+. .+++||+.|.+|.-.- .|.- |.. -++ .-+-|.+..
T Consensus 218 ~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa--nPd~----qht---------~ai--~~V~Ys~t~------- 273 (430)
T KOG0640|consen 218 PVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA--NPDD----QHT---------GAI--TQVRYSSTG------- 273 (430)
T ss_pred eeeeEeecCCCceEEEecCCCceeEEeccceeEeeec--Cccc----ccc---------cce--eEEEecCCc-------
Confidence 899999987 788888875 6999999998763321 1210 000 001 011111110
Q ss_pred cccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCe
Q 004255 271 RLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGI 350 (765)
Q Consensus 271 ~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~ 350 (765)
+ .-++++.||.
T Consensus 274 -----------------------------------------------------------------~----lYvTaSkDG~ 284 (430)
T KOG0640|consen 274 -----------------------------------------------------------------S----LYVTASKDGA 284 (430)
T ss_pred -----------------------------------------------------------------c----EEEEeccCCc
Confidence 0 0125678999
Q ss_pred EEEEECCCCcEEEEec-cCCC-CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc-----c-CCCCCCc----------
Q 004255 351 VVVKDFVTRAIISQFK-AHTS-PISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-----R-SGSGNHK---------- 412 (765)
Q Consensus 351 V~IwDl~s~~~i~~~~-aH~~-~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~-----~-~~sG~~~---------- 412 (765)
|+|||=.+++++.+|. +|.+ .|.+..|..+|+++++.+. +.++++|.+.+... + ...|.+.
T Consensus 285 IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~-DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNht 363 (430)
T KOG0640|consen 285 IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK-DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHT 363 (430)
T ss_pred EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC-cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCc
Confidence 9999999999999985 7854 6889999999999999998 56799999976421 0 0011100
Q ss_pred --c------------ccCCcc-eEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 413 --Y------------DWNSSH-VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 413 --~------------~~~~s~-~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
+ .|++.. .++..+.-|+ +..+..|.-||.+--++++|+|..++.|--.
T Consensus 364 EdyVl~pDEas~slcsWdaRtadr~~l~slgH-n~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 364 EDYVLFPDEASNSLCSWDARTADRVALLSLGH-NGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred cceEEccccccCceeeccccchhhhhhcccCC-CCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 0 122110 1111222343 4568889999999999999999999999643
No 129
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.32 E-value=2.4e-10 Score=121.85 Aligned_cols=205 Identities=16% Similarity=0.209 Sum_probs=156.7
Q ss_pred ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 004255 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (765)
Q Consensus 97 ~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~ 176 (765)
-...|..|.++|.++.+.|+ -+|+|. |++ +..-.
T Consensus 56 S~~tF~~H~~svFavsl~P~-------------~~l~aT--GGg-------------------------------DD~Af 89 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPN-------------NNLVAT--GGG-------------------------------DDLAF 89 (399)
T ss_pred ceeehhhcCCceEEEEeCCC-------------CceEEe--cCC-------------------------------CceEE
Confidence 45678899999999999874 246543 322 24788
Q ss_pred EEECCCCeEEEEEeC-CCCEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEE
Q 004255 177 FYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAV 252 (765)
Q Consensus 177 lWdlktg~~v~tL~~-~s~V~sV~~s~--~~LaV~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Al 252 (765)
||++.+|+...++.. ...|.++.|+. .+||+| ++++|.||++.++...+.+.. +.. - +
T Consensus 90 lW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~---------------d--i 151 (399)
T KOG0296|consen 90 LWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVE---------------D--I 151 (399)
T ss_pred EEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec-ccC---------------c--e
Confidence 999999999999875 47999999987 688876 477999999999988777751 110 0 1
Q ss_pred ccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCC
Q 004255 253 GPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPN 332 (765)
Q Consensus 253 spr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s 332 (765)
.||-.-... +
T Consensus 152 --eWl~WHp~a--------------------------------~------------------------------------ 161 (399)
T KOG0296|consen 152 --EWLKWHPRA--------------------------------H------------------------------------ 161 (399)
T ss_pred --EEEEecccc--------------------------------c------------------------------------
Confidence 233332210 0
Q ss_pred CccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc
Q 004255 333 SVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK 412 (765)
Q Consensus 333 ~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~ 412 (765)
.+..+..||.|-.|.+.++...+.|.+|..++++=.|.|||++++|+..||+ |++|+.++ |
T Consensus 162 --------illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt-i~~Wn~kt-------g--- 222 (399)
T KOG0296|consen 162 --------ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT-IIVWNPKT-------G--- 222 (399)
T ss_pred --------EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce-EEEEecCC-------C---
Confidence 0124578999999999998889999999999999999999999999999775 99999976 4
Q ss_pred cccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 413 ~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
++++++.. .......+++++.++..+..++.++.+++-+...
T Consensus 223 -------~p~~~~~~-~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 223 -------QPLHKITQ-AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS 264 (399)
T ss_pred -------ceeEEecc-cccCcCCccccccccceeEeccCCccEEEEcccc
Confidence 56777642 2233578899999999999999999999876544
No 130
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.31 E-value=7.6e-11 Score=125.94 Aligned_cols=105 Identities=20% Similarity=0.227 Sum_probs=84.3
Q ss_pred ccccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 004255 342 GADMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (765)
Q Consensus 342 ~~~~~~dG~V~IwDl~s~---~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s 418 (765)
+++++.||.|+|||++++ .++. .++|.+-|+.|.|+.+-.+||+|+.+|+ ++|||++.... +
T Consensus 273 faScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~~----~--------- 337 (440)
T KOG0302|consen 273 FASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGT-LSIWDLRQFKS----G--------- 337 (440)
T ss_pred EEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCce-EEEEEhhhccC----C---------
Confidence 346788999999999987 3443 3899999999999999999999999775 99999976421 1
Q ss_pred ceEEEEEecccccccEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCC
Q 004255 419 HVHLYKLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 419 ~~~l~~l~rG~~~a~I~slaFSpD-g~~Las~S~dgTVhIwdl~~~g 464 (765)
+.+..+.+ |.++|++|.|+|. ...||+++.|.+|.|||+.-..
T Consensus 338 -~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 338 -QPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred -CcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 35555553 4568999999975 4678999999999999997543
No 131
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.30 E-value=1.5e-10 Score=126.34 Aligned_cols=176 Identities=12% Similarity=0.125 Sum_probs=129.4
Q ss_pred CCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 004255 172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (765)
++.|.|||..+.+.++.+..+ +.|.+++|-. ++.+.+.+..|++|++..+..+.++.+|+.
T Consensus 223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd--------------- 287 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD--------------- 287 (479)
T ss_pred CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc---------------
Confidence 368999999999999998865 6999888865 566677788899999998888788877775
Q ss_pred ceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (765)
Q Consensus 248 ~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~ 327 (765)
+.++++. .+ .+++
T Consensus 288 ~v~~Ida----L~--------reR~------------------------------------------------------- 300 (479)
T KOG0299|consen 288 GVLGIDA----LS--------RERC------------------------------------------------------- 300 (479)
T ss_pred ceeeech----hc--------ccce-------------------------------------------------------
Confidence 1222210 00 0000
Q ss_pred CccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCC
Q 004255 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG 407 (765)
Q Consensus 328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~ 407 (765)
...++.|.+++||++. ......|.+|.+.|-|++|=.+ ..++|||.+|. |-+|++..-
T Consensus 301 --------------vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KK----- 358 (479)
T KOG0299|consen 301 --------------VTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKK----- 358 (479)
T ss_pred --------------EEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeeccc-----
Confidence 0123578999999994 3445678999999999999754 67889999775 999998541
Q ss_pred CCCCccccCCcceEEEEE--eccccc--------ccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 408 SGNHKYDWNSSHVHLYKL--HRGITS--------ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 408 sG~~~~~~~~s~~~l~~l--~rG~~~--------a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
..++.. --|... .+|++|+-.|....+|+||.+|.|+||.+++.
T Consensus 359 ------------kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 359 ------------KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ------------CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 122221 112111 27999999999999999999999999999863
No 132
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.30 E-value=9.3e-11 Score=127.46 Aligned_cols=180 Identities=14% Similarity=0.139 Sum_probs=121.0
Q ss_pred CCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 004255 172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~~LaV~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~ 246 (765)
++||++||+.+|++..++.++ .+|.++.+.+ .+|+.| .+++|.++|.+...+ .
T Consensus 265 D~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-------s--------------- 322 (463)
T KOG0270|consen 265 DKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-------S--------------- 322 (463)
T ss_pred CceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-------c---------------
Confidence 589999999999999999955 5999999987 566665 567899999764210 0
Q ss_pred cceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCC
Q 004255 247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (765)
Q Consensus 247 ~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~ 326 (765)
.. .|=+-+.- -++.|+...+.
T Consensus 323 --~~----~wk~~g~V-------Ekv~w~~~se~---------------------------------------------- 343 (463)
T KOG0270|consen 323 --GK----EWKFDGEV-------EKVAWDPHSEN---------------------------------------------- 343 (463)
T ss_pred --Cc----eEEeccce-------EEEEecCCCce----------------------------------------------
Confidence 00 11111110 01122221110
Q ss_pred CCccCCCccccccccccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcc
Q 004255 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCM 404 (765)
Q Consensus 327 ~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~-~~i~~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~ 404 (765)
....+..||+|+-+|++.. +++-++++|..+|++|++++. -.+|+|+|.++ +++||++....
T Consensus 344 --------------~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~-~Vklw~~~~~~- 407 (463)
T KOG0270|consen 344 --------------SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK-VVKLWKFDVDS- 407 (463)
T ss_pred --------------eEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccc-eEEEEeecCCC-
Confidence 0112357899999999875 899999999999999999985 45789999955 69999985321
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCC
Q 004255 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 405 ~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~g 464 (765)
+...+.+.+.-| ...|.++.|+- -+||.|+..+.++|||+....
T Consensus 408 ------------~~~v~~~~~~~~----rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 408 ------------PKSVKEHSFKLG----RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ------------Cccccccccccc----ceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 111122222222 25677888875 468889999999999997653
No 133
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.30 E-value=8.6e-10 Score=115.27 Aligned_cols=252 Identities=15% Similarity=0.194 Sum_probs=163.9
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcc-eEeeeeccCCEEEEEEecCCCCCCCCCCccccCCE
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF-NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~-~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpL 132 (765)
..|.|.-..|-.. ...+|+.|+.+| +|+|++++.|.. -+....|+|||-++.+.-+ ...
T Consensus 26 P~DsIS~l~FSP~------~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd-------------gsk 86 (347)
T KOG0647|consen 26 PEDSISALAFSPQ------ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD-------------GSK 86 (347)
T ss_pred cccchheeEeccc------cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC-------------Cce
Confidence 4567777778651 245777888776 999999876432 3455678899999998843 235
Q ss_pred EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC----CeEEEE
Q 004255 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP----RIVAVG 208 (765)
Q Consensus 133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~----~~LaV~ 208 (765)
+++.++ ++.+++|||.+++....--+..+|..+++=+ ..|++|
T Consensus 87 Vf~g~~---------------------------------Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG 133 (347)
T KOG0647|consen 87 VFSGGC---------------------------------DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTG 133 (347)
T ss_pred EEeecc---------------------------------CCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEec
Confidence 554222 3689999999997766666778999998744 366775
Q ss_pred e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcC
Q 004255 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (765)
Q Consensus 209 ~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~s 287 (765)
. |.+|+.||.+.-..+.++.- |+ | .|+-
T Consensus 134 SWDKTlKfWD~R~~~pv~t~~L---Pe--------------------R--vYa~-------------------------- 162 (347)
T KOG0647|consen 134 SWDKTLKFWDTRSSNPVATLQL---PE--------------------R--VYAA-------------------------- 162 (347)
T ss_pred ccccceeecccCCCCeeeeeec---cc--------------------e--eeeh--------------------------
Confidence 4 67899999987666555532 11 0 0111
Q ss_pred CCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 004255 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (765)
Q Consensus 288 p~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a 367 (765)
|....+ .+.+..+..|.+|+|+++. ..|+.
T Consensus 163 ------------Dv~~pm------------------------------------~vVata~r~i~vynL~n~~--te~k~ 192 (347)
T KOG0647|consen 163 ------------DVLYPM------------------------------------AVVATAERHIAVYNLENPP--TEFKR 192 (347)
T ss_pred ------------hccCce------------------------------------eEEEecCCcEEEEEcCCCc--chhhh
Confidence 100000 0012234567788886653 34555
Q ss_pred CCCC----eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-----cccEEEEE
Q 004255 368 HTSP----ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-----SATIQDIC 438 (765)
Q Consensus 368 H~~~----IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~-----~a~I~sla 438 (765)
+.+| +.||+.-+|....|-||.+|. +-|..+.+. . ....-.++.+|-.. -..|.+|+
T Consensus 193 ~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~-------~------~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 193 IESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDP-------N------PKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred hcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCC-------C------ccCceeEEEeccCCCCCCceEEecceE
Confidence 5554 568888888777899999887 778887541 0 01123455555211 12478999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255 439 FSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 439 FSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
|+|.-..|++++.|||+-.||-+.....-...+|.
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~ 293 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP 293 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcCC
Confidence 99999999999999999999987655444444454
No 134
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.28 E-value=2.4e-10 Score=119.97 Aligned_cols=222 Identities=14% Similarity=0.135 Sum_probs=142.1
Q ss_pred CCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255 74 FKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (765)
Q Consensus 74 ~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~ 152 (765)
.+..+++|..+ .|+|||+.... ..-.+..|.|.|.+++|.|. ++.+ .|| . +.+
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~-qlg~ll~HagsitaL~F~~~---------~S~s-hLl-S-~sd------------- 105 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRK-QLGILLSHAGSITALKFYPP---------LSKS-HLL-S-GSD------------- 105 (362)
T ss_pred cceeEeccCCCCcEEEEeccchh-hhcceeccccceEEEEecCC---------cchh-hee-e-ecC-------------
Confidence 36788888876 59999996544 34556677999999999874 3333 344 2 221
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC-Ce--EEEEeCCeEEEEECCCCceeEEEE
Q 004255 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-RI--VAVGLATQIYCFDALTLENKFSVL 228 (765)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~-~~--LaV~~~~~I~iwD~~t~~~l~tl~ 228 (765)
++.|.+|+...=+++++++.+ ..|..|++.| .. |.|+.|+.++.||+.+|+.-+.+.
T Consensus 106 -------------------DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~ 166 (362)
T KOG0294|consen 106 -------------------DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN 166 (362)
T ss_pred -------------------CCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec
Confidence 368999999999999999865 5899999988 33 456778889999999998777665
Q ss_pred ecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhh
Q 004255 229 TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (765)
Q Consensus 229 t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la 306 (765)
-...+ ..+.++| .+.+....+. ...+|.-.. +..++...+
T Consensus 167 L~~~a--------------t~v~w~~~Gd~F~v~~~~~------i~i~q~d~A----------------~v~~~i~~~-- 208 (362)
T KOG0294|consen 167 LKNKA--------------TLVSWSPQGDHFVVSGRNK------IDIYQLDNA----------------SVFREIENP-- 208 (362)
T ss_pred cCCcc--------------eeeEEcCCCCEEEEEeccE------EEEEecccH----------------hHhhhhhcc--
Confidence 32221 1133333 1111111110 001111000 000000000
Q ss_pred cccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE--CCCCCEE
Q 004255 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF--DPSGTLL 384 (765)
Q Consensus 307 ~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaF--SpdG~lL 384 (765)
.+. .|. .+. ....+..+..++.|.+||..+..+...|.||...|-.+.+ +|++.+|
T Consensus 209 ---~r~---l~~--~~l--------------~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 209 ---KRI---LCA--TFL--------------DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL 266 (362)
T ss_pred ---ccc---eee--eec--------------CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence 000 000 000 0012335677899999999999999999999999999884 6889999
Q ss_pred EEEEcCCCEEEEEeCCC
Q 004255 385 VTASVYGNNINIFRIMP 401 (765)
Q Consensus 385 ATaS~dGt~IrVWdi~~ 401 (765)
+|+|.||. |+|||+..
T Consensus 267 vTaSSDG~-I~vWd~~~ 282 (362)
T KOG0294|consen 267 VTASSDGF-IKVWDIDM 282 (362)
T ss_pred EEeccCce-EEEEEccc
Confidence 99999775 99999954
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=1.6e-09 Score=113.68 Aligned_cols=247 Identities=15% Similarity=0.085 Sum_probs=158.4
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
...+|.|.-++|+. ..+-|+++..+| +++||++.. -..+.-.|++|+-..+|-+. +
T Consensus 10 npP~d~IS~v~f~~-------~~~~LLvssWDgslrlYdv~~~--~l~~~~~~~~plL~c~F~d~------------~-- 66 (323)
T KOG1036|consen 10 NPPEDGISSVKFSP-------SSSDLLVSSWDGSLRLYDVPAN--SLKLKFKHGAPLLDCAFADE------------S-- 66 (323)
T ss_pred CCChhceeeEEEcC-------cCCcEEEEeccCcEEEEeccch--hhhhheecCCceeeeeccCC------------c--
Confidence 34578999999973 134566666776 999999643 23344467788888876631 1
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC---CeEEEE
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVG 208 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~---~~LaV~ 208 (765)
-+++ |+ .++.|+.+|+.+++......+...|.+|..++ .+|+.+
T Consensus 67 ~~~~--G~-------------------------------~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgs 113 (323)
T KOG1036|consen 67 TIVT--GG-------------------------------LDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGS 113 (323)
T ss_pred eEEE--ec-------------------------------cCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcc
Confidence 2222 21 24799999999998887778888999999885 466667
Q ss_pred eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCC
Q 004255 209 LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (765)
Q Consensus 209 ~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp 288 (765)
.+++|++||.++-....++.. +. .+..+.++..
T Consensus 114 WD~~ik~wD~R~~~~~~~~d~-~k-------------kVy~~~v~g~--------------------------------- 146 (323)
T KOG1036|consen 114 WDKTIKFWDPRNKVVVGTFDQ-GK-------------KVYCMDVSGN--------------------------------- 146 (323)
T ss_pred cCccEEEEecccccccccccc-Cc-------------eEEEEeccCC---------------------------------
Confidence 888999999886222111110 00 0111111100
Q ss_pred CCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc-
Q 004255 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA- 367 (765)
Q Consensus 289 ~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a- 367 (765)
. +..+..+..|.+||+.+.....+.+.
T Consensus 147 ---~-------------------------------------------------LvVg~~~r~v~iyDLRn~~~~~q~reS 174 (323)
T KOG1036|consen 147 ---R-------------------------------------------------LVVGTSDRKVLIYDLRNLDEPFQRRES 174 (323)
T ss_pred ---E-------------------------------------------------EEEeecCceEEEEEcccccchhhhccc
Confidence 0 11234567899999998765544433
Q ss_pred -CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-----ccEEEEEEcc
Q 004255 368 -HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----ATIQDICFSH 441 (765)
Q Consensus 368 -H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~-----a~I~slaFSp 441 (765)
-.-.+.||++-|++.=.|.+|.+|. |-|=.+.+.. - ..+..-.++.+|-... .+|.+|+|+|
T Consensus 175 ~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~-----~------~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 175 SLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSE-----E------AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred cceeEEEEEEEecCCCceEEEeecce-EEEEccCCch-----H------HhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 2447899999999998999999887 4443332210 0 0000111222221111 2589999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255 442 YSQWIAIVSSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 442 Dg~~Las~S~dgTVhIwdl~~~gg~ 466 (765)
--+.||+|+.||.|.+||+.+.+..
T Consensus 243 ~~~tfaTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 243 IHGTFATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred ccceEEecCCCceEEEccCcchhhh
Confidence 9999999999999999999876543
No 136
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.25 E-value=3.5e-11 Score=127.96 Aligned_cols=214 Identities=16% Similarity=0.146 Sum_probs=134.8
Q ss_pred CCEEEEEECCCCeEEEEEeCC-CCEEEEEecC-CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 004255 172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 249 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~-~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~ 249 (765)
++.|+|||+.+.+++.+++.+ +.|..|.+.. .++.||.+.+|+.|-+.- ..++++.+...- .++. .
T Consensus 88 DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~-------~gId----h 155 (433)
T KOG0268|consen 88 DGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGKSVY-------LGID----H 155 (433)
T ss_pred CceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeeccccc-------cccc----c
Confidence 468999999999999999976 5999999887 677788888999998654 356666542220 0000 0
Q ss_pred eEEccceEEEecCCceecCCccccCCCCCC-CCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCC
Q 004255 250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTP-SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (765)
Q Consensus 250 ~Alspr~LAyas~~~~~~~~G~~s~~~lt~-~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~ 328 (765)
.. ...-.|+++.+.- .|+.... |..+.+. |. .+...
T Consensus 156 ~~-~~~~FaTcGe~i~-------IWD~~R~~Pv~smsw---------------------G~--------------Dti~s 192 (433)
T KOG0268|consen 156 HR-KNSVFATCGEQID-------IWDEQRDNPVSSMSW---------------------GA--------------DSISS 192 (433)
T ss_pred cc-ccccccccCceee-------ecccccCCccceeec---------------------CC--------------CceeE
Confidence 00 0022344444322 2332211 1111000 00 00111
Q ss_pred ccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 004255 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (765)
Q Consensus 329 ~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~s 408 (765)
..+||... .-++.+..|+.|.|||+....++..+.- +..-+.|+|+|.+--+++|++ |+.+..||++..
T Consensus 193 vkfNpvET---sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~E-D~nlY~~DmR~l------ 261 (433)
T KOG0268|consen 193 VKFNPVET---SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANE-DHNLYTYDMRNL------ 261 (433)
T ss_pred EecCCCcc---hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccc-cccceehhhhhh------
Confidence 22233211 1245677899999999999877665432 223467999998877777777 677999998542
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 409 G~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
- +.+. .++|+.. .|.++.|||.|+-+++||-|.||+||.++..
T Consensus 262 ~----------~p~~-v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 262 S----------RPLN-VHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred c----------ccch-hhcccce-eEEEeccCCCcchhccccccceEEEeecCCC
Confidence 0 2222 2345544 4999999999999999999999999999863
No 137
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=7.2e-11 Score=123.78 Aligned_cols=108 Identities=12% Similarity=0.222 Sum_probs=86.4
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (765)
Q Consensus 342 ~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~ 421 (765)
+.++..|-.|.|||+. |+.+.++......-...+.||+|++||.++-.-. ++||.+-- ..+ |. -....+
T Consensus 202 imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD-VkVwE~~f--~kd--G~-----fqev~r 270 (420)
T KOG2096|consen 202 IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD-VKVWEPIF--TKD--GT-----FQEVKR 270 (420)
T ss_pred EEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCC-ceEEEEEe--ccC--cc-----hhhhhh
Confidence 4567788899999999 8999999888888888999999999999988544 89999743 121 21 112346
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
++.|. |+. +.|..++||++++.+++.|.||+++|||++-
T Consensus 271 vf~Lk-GH~-saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 271 VFSLK-GHQ-SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred hheec-cch-hheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 67775 644 5699999999999999999999999999873
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=3.6e-10 Score=123.60 Aligned_cols=122 Identities=13% Similarity=0.146 Sum_probs=85.2
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
+++.|.++++||+..+..+.++.- ..+|.|++.+|-++.+..|+.+|. |-+.++......+ .|...-..........
T Consensus 193 TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~~~~-~~v~~k~~~~~~t~~~ 269 (476)
T KOG0646|consen 193 TASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLSGQS-AGVNQKGRHEENTQIN 269 (476)
T ss_pred EecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcce-EEeeehhcCCccc-ccccccccccccceee
Confidence 567899999999999998887643 468999999999999999999775 7777664321000 0000000000112333
Q ss_pred EEeccccc-ccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccc
Q 004255 424 KLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 469 (765)
Q Consensus 424 ~l~rG~~~-a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~ 469 (765)
.+. |+.. ..|+|++.|-||..|++|+.||+|.|||+........+
T Consensus 270 ~~~-Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 270 VLV-GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred eec-cccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 343 4333 47999999999999999999999999999876554443
No 139
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.24 E-value=3.6e-09 Score=116.66 Aligned_cols=297 Identities=14% Similarity=0.179 Sum_probs=174.2
Q ss_pred CcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcce---Eeeeecc-CCEEEEEEecCCCCCCCCCCccccCCE
Q 004255 57 DQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFN---ELVSKRD-GPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (765)
Q Consensus 57 ~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~---ells~~d-g~V~~v~~lP~p~~~~~~d~f~~srpL 132 (765)
|-|.-|.|-. .+++++++..++.|-.|+... +.+. .++.+++ .-|.+|+|+++. ..
T Consensus 201 e~v~~a~FHP------td~nliit~Gk~H~~Fw~~~~-~~l~k~~~~fek~ekk~Vl~v~F~eng-------------dv 260 (626)
T KOG2106|consen 201 EVVFLATFHP------TDPNLIITCGKGHLYFWTLRG-GSLVKRQGIFEKREKKFVLCVTFLENG-------------DV 260 (626)
T ss_pred ceEEEEEecc------CCCcEEEEeCCceEEEEEccC-CceEEEeeccccccceEEEEEEEcCCC-------------CE
Confidence 3455555533 236788888888899999853 3333 2455555 457888888652 22
Q ss_pred EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCCEEEEEecC-CeEEEEe-
Q 004255 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP-RIVAVGL- 209 (765)
Q Consensus 133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~-~~s~V~sV~~s~-~~LaV~~- 209 (765)
+++|. .++|.||+-.+.+..+... ++..|+++..-+ ..|+.|.
T Consensus 261 ---iTgDS-------------------------------~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgK 306 (626)
T KOG2106|consen 261 ---ITGDS-------------------------------GGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGK 306 (626)
T ss_pred ---EeecC-------------------------------CceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCc
Confidence 34432 3689999998887777665 457899888765 3444454
Q ss_pred CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCceecCCccccCCCCCCCCCCCCcCC
Q 004255 210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (765)
Q Consensus 210 ~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp-r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp 288 (765)
|.+|..|| .+.+. ++....|+ ++++ |-+|=...+. +....+-
T Consensus 307 DRki~~Wd-~~y~k---~r~~elPe----------------~~G~iRtv~e~~~di-~vGTtrN---------------- 349 (626)
T KOG2106|consen 307 DRKIILWD-DNYRK---LRETELPE----------------QFGPIRTVAEGKGDI-LVGTTRN---------------- 349 (626)
T ss_pred cceEEecc-ccccc---cccccCch----------------hcCCeeEEecCCCcE-EEeeccc----------------
Confidence 45799999 44433 33323332 1222 3333332221 1100000
Q ss_pred CCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC
Q 004255 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH 368 (765)
Q Consensus 289 ~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH 368 (765)
. +-... +..+...+..++..+++ +.+.+++. ....++++|+.|+||+ ..+++-+.. -
T Consensus 350 --~--iL~Gt------~~~~f~~~v~gh~delw----gla~hps~------~q~~T~gqdk~v~lW~--~~k~~wt~~-~ 406 (626)
T KOG2106|consen 350 --F--ILQGT------LENGFTLTVQGHGDELW----GLATHPSK------NQLLTCGQDKHVRLWN--DHKLEWTKI-I 406 (626)
T ss_pred --e--EEEee------ecCCceEEEEeccccee----eEEcCCCh------hheeeccCcceEEEcc--CCceeEEEE-e
Confidence 0 00000 00000001111111111 00111110 1245778999999999 344433322 2
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (765)
Q Consensus 369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las 448 (765)
..|+.|+.|+|.| .||.+...|. --|.|+.+ +.+..++. .+..|..++|||||.+||+
T Consensus 407 ~d~~~~~~fhpsg-~va~Gt~~G~-w~V~d~e~------------------~~lv~~~~--d~~~ls~v~ysp~G~~lAv 464 (626)
T KOG2106|consen 407 EDPAECADFHPSG-VVAVGTATGR-WFVLDTET------------------QDLVTIHT--DNEQLSVVRYSPDGAFLAV 464 (626)
T ss_pred cCceeEeeccCcc-eEEEeeccce-EEEEeccc------------------ceeEEEEe--cCCceEEEEEcCCCCEEEE
Confidence 4688999999999 8999999886 56788754 34445543 2568999999999999999
Q ss_pred EeCCCcEEEEeCCCCCCCccc-ccccCCCCCCccccccCCCcccCCCCC
Q 004255 449 VSSKGTCHVFVLSPFGGDSGF-QTLSSQGGDPYLFPVLSLPWWCTSSGI 496 (765)
Q Consensus 449 ~S~dgTVhIwdl~~~gg~~~~-~~h~~~~~~~~~~p~~~l~~~~~s~~~ 496 (765)
+|.|+.|.||.++..|..... .-|. .+|+..|-|...+.+.
T Consensus 465 gs~d~~iyiy~Vs~~g~~y~r~~k~~-------gs~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 465 GSHDNHIYIYRVSANGRKYSRVGKCS-------GSPITHLDWSSDSQFL 506 (626)
T ss_pred ecCCCeEEEEEECCCCcEEEEeeeec-------CceeEEeeecCCCceE
Confidence 999999999999987765443 2222 2677888776666543
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=1.3e-09 Score=127.05 Aligned_cols=222 Identities=15% Similarity=0.197 Sum_probs=153.9
Q ss_pred EEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCC
Q 004255 77 VLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGG 155 (765)
Q Consensus 77 vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~ 155 (765)
.|++|..+ .+++|.. +.++...+|-+-.-|++.+++. +++.++|. ++
T Consensus 68 ~f~~~s~~~tv~~y~f-ps~~~~~iL~Rftlp~r~~~v~-------------g~g~~iaa-gs----------------- 115 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKF-PSGEEDTILARFTLPIRDLAVS-------------GSGKMIAA-GS----------------- 115 (933)
T ss_pred ceEEeeccceEEEeeC-CCCCccceeeeeeccceEEEEe-------------cCCcEEEe-ec-----------------
Confidence 46666654 5999999 4576777888878889998876 45557654 22
Q ss_pred cccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEecC
Q 004255 156 VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYP 231 (765)
Q Consensus 156 ~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~--~~LaV~-~~~~I~iwD~~t~~~l~tl~t~p 231 (765)
.+..|++-++.+......++. ..+|+.|.++| ++|||+ .+++|+|||+.++.+.+++..-+
T Consensus 116 ---------------dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~ 180 (933)
T KOG1274|consen 116 ---------------DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD 180 (933)
T ss_pred ---------------CceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCC
Confidence 146899999999888888875 47999999998 688875 57799999999999888886422
Q ss_pred -CcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccc
Q 004255 232 -VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS 310 (765)
Q Consensus 232 -~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ 310 (765)
.-+ +-. .. + .++ ++.+|.+|.+++
T Consensus 181 k~n~---------------~~~---------s~--i--~~~------------~aW~Pk~g~la~--------------- 205 (933)
T KOG1274|consen 181 KDNE---------------FIL---------SR--I--CTR------------LAWHPKGGTLAV--------------- 205 (933)
T ss_pred cccc---------------ccc---------cc--e--eee------------eeecCCCCeEEe---------------
Confidence 100 000 00 0 000 111233343321
Q ss_pred eeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc--CCCCeEEEEECCCCCEEEEEE
Q 004255 311 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA--HTSPISALCFDPSGTLLVTAS 388 (765)
Q Consensus 311 ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a--H~~~IsaLaFSpdG~lLATaS 388 (765)
...|+.|++|+..+......++. |.+.+..++|||.|+|||+++
T Consensus 206 ----------------------------------~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 206 ----------------------------------PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred ----------------------------------eccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeec
Confidence 23578999999998887777753 455599999999999999999
Q ss_pred cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 004255 389 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458 (765)
Q Consensus 389 ~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIw 458 (765)
.+|. |-|||+.++ ..++++ ..|++++|-|++.-|-.-...|+.-+|
T Consensus 252 ~~g~-I~vWnv~t~------------------~~~~~~-----~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 252 LDGQ-ILVWNVDTH------------------ERHEFK-----RAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cCCc-EEEEecccc------------------hhcccc-----ceeEEEecCCCCCeeEEEeeccccccC
Confidence 9775 999998642 112222 248999999998877666555554444
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=5.4e-09 Score=118.72 Aligned_cols=248 Identities=13% Similarity=0.140 Sum_probs=167.5
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 51 ~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
+.+.+-|.+.|+ +.++++.+|..+.+--||+. +.+....+....|++..|++.|. .
T Consensus 67 ~~drsIE~L~W~----------e~~RLFS~g~sg~i~EwDl~-~lk~~~~~d~~gg~IWsiai~p~-------------~ 122 (691)
T KOG2048|consen 67 PEDRSIESLAWA----------EGGRLFSSGLSGSITEWDLH-TLKQKYNIDSNGGAIWSIAINPE-------------N 122 (691)
T ss_pred CCCCceeeEEEc----------cCCeEEeecCCceEEEEecc-cCceeEEecCCCcceeEEEeCCc-------------c
Confidence 444567888888 13678888888889999995 45555556666789999999863 1
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC---CCCEEEEEecCC--eE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF---RSSVCMVRCSPR--IV 205 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~---~s~V~sV~~s~~--~L 205 (765)
..|++ +||+ +.+.+.+...++......| .++|+++++++. .|
T Consensus 123 ~~l~I-gcdd--------------------------------Gvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i 169 (691)
T KOG2048|consen 123 TILAI-GCDD--------------------------------GVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI 169 (691)
T ss_pred ceEEe-ecCC--------------------------------ceEEEEecCCceEEEEeecccccceEEEEEecCCccEE
Confidence 24554 5543 4677777777776665554 379999999993 36
Q ss_pred EEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCC
Q 004255 206 AVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (765)
Q Consensus 206 aV~~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~ 284 (765)
+.|..+ .|+|||+.++..++.+.-.-. + ... +-..+.++- .|-.+
T Consensus 170 ~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d----~--l~k---~~~~iVWSv---~~Lrd---------------------- 215 (691)
T KOG2048|consen 170 AGGSIDGVIRIWDVKSGQTLHIITMQLD----R--LSK---REPTIVWSV---LFLRD---------------------- 215 (691)
T ss_pred EecccCceEEEEEcCCCceEEEeeeccc----c--ccc---CCceEEEEE---EEeec----------------------
Confidence 776655 599999999887773321000 0 000 001112110 01000
Q ss_pred CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE
Q 004255 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ 364 (765)
Q Consensus 285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~ 364 (765)
.++++++..|+|++||...++.+..
T Consensus 216 -------------------------------------------------------~tI~sgDS~G~V~FWd~~~gTLiqS 240 (691)
T KOG2048|consen 216 -------------------------------------------------------STIASGDSAGTVTFWDSIFGTLIQS 240 (691)
T ss_pred -------------------------------------------------------CcEEEecCCceEEEEcccCcchhhh
Confidence 0234567789999999999999999
Q ss_pred eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 004255 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ 444 (765)
Q Consensus 365 ~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~ 444 (765)
+..|...|.||+-++++.+|++|+.|+++|++... +. +. .| +...+|-.+...|.+++-.++
T Consensus 241 ~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~-~~------~~---~w------v~~~~r~~h~hdvrs~av~~~-- 302 (691)
T KOG2048|consen 241 HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT-TN------KS---EW------VINSRRDLHAHDVRSMAVIEN-- 302 (691)
T ss_pred hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEec-CC------cc---ce------eeeccccCCcccceeeeeecc--
Confidence 99999999999999999999999999987766554 21 10 01 112233344556999999887
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 004255 445 WIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 445 ~Las~S~dgTVhIwdl~~ 462 (765)
.|.+|+.|.++.+=....
T Consensus 303 ~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 303 ALISGGRDFTLAICSSRE 320 (691)
T ss_pred eEEecceeeEEEEccccc
Confidence 889999999987755443
No 142
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.19 E-value=2.4e-08 Score=108.79 Aligned_cols=105 Identities=11% Similarity=0.123 Sum_probs=69.8
Q ss_pred CCCCeEEEEECCC--C--cEEEEeccC------CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 004255 346 DNAGIVVVKDFVT--R--AIISQFKAH------TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (765)
Q Consensus 346 ~~dG~V~IwDl~s--~--~~i~~~~aH------~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~ 415 (765)
..+++|.+||+.. + +.+..+..+ ......+.|+|||++|+++...++.|.||++... +.
T Consensus 194 ~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~------~~----- 262 (330)
T PRK11028 194 ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED------GS----- 262 (330)
T ss_pred cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC------CC-----
Confidence 3479999999973 3 334444322 1123468999999999998776678999998542 10
Q ss_pred CCcceEEEEEecccccccEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCCCC
Q 004255 416 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGGD 466 (765)
Q Consensus 416 ~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~-dgTVhIwdl~~~gg~ 466 (765)
....+.....| .....++|+|||++|+++.. +++|.||+++...+.
T Consensus 263 --~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~ 309 (330)
T PRK11028 263 --VLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGL 309 (330)
T ss_pred --eEEEeEEEecc---ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCc
Confidence 00112222222 12457899999999998876 899999999765443
No 143
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=8.4e-10 Score=120.77 Aligned_cols=220 Identities=16% Similarity=0.210 Sum_probs=140.9
Q ss_pred CCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcC
Q 004255 73 VFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (765)
Q Consensus 73 ~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~ 151 (765)
..+..|+.|.-.| +.+|-+ .+|++..+++.|=..|.++++.-+ .-++. +++
T Consensus 91 n~G~~l~ag~i~g~lYlWel-ssG~LL~v~~aHYQ~ITcL~fs~d-------------gs~ii--Tgs------------ 142 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWEL-SSGILLNVLSAHYQSITCLKFSDD-------------GSHII--TGS------------ 142 (476)
T ss_pred CCceEEEeecccCcEEEEEe-ccccHHHHHHhhccceeEEEEeCC-------------CcEEE--ecC------------
Confidence 4578888885554 999999 579999999999999999998843 22443 331
Q ss_pred CCCCcccCCcCCCCCCCCCCCCEEEEEECC---------CCeEEEEEeCCC-CEEEEEecC-----CeEEEEeCCeEEEE
Q 004255 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ---------SHCYEHVLRFRS-SVCMVRCSP-----RIVAVGLATQIYCF 216 (765)
Q Consensus 152 ~~~~~r~g~~~~~~~~~~~~p~tV~lWdlk---------tg~~v~tL~~~s-~V~sV~~s~-----~~LaV~~~~~I~iw 216 (765)
.++.|.+|++. +-++++.+..|. +|.++.+.. +++.++.|.+|+||
T Consensus 143 -------------------kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~w 203 (476)
T KOG0646|consen 143 -------------------KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLW 203 (476)
T ss_pred -------------------CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEE
Confidence 13678888752 223455555444 788887643 66667788899999
Q ss_pred ECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecC-CceecCCccccCCCCCCCCCCCCcCCCCCcce
Q 004255 217 DALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLV 294 (765)
Q Consensus 217 D~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp-r~LAyas~-~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslv 294 (765)
|+..+.++.++.. |. ....+++.| ....|.+. +..+ ++.+-
T Consensus 204 dlS~g~LLlti~f-p~-------------si~av~lDpae~~~yiGt~~G~I-------~~~~~---------------- 246 (476)
T KOG0646|consen 204 DLSLGVLLLTITF-PS-------------SIKAVALDPAERVVYIGTEEGKI-------FQNLL---------------- 246 (476)
T ss_pred EeccceeeEEEec-CC-------------cceeEEEcccccEEEecCCcceE-------Eeeeh----------------
Confidence 9999998887764 22 135678888 33444432 2111 00000
Q ss_pred eeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCC--Ce
Q 004255 295 ARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTS--PI 372 (765)
Q Consensus 295 a~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~--~I 372 (765)
-++.+ .. .+=..+.++. .+..+..|.+|.. +|
T Consensus 247 ----------------~~~~~-------------------~~----------~~v~~k~~~~-~~t~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 247 ----------------FKLSG-------------------QS----------AGVNQKGRHE-ENTQINVLVGHENESAI 280 (476)
T ss_pred ----------------hcCCc-------------------cc----------cccccccccc-ccceeeeeccccCCcce
Confidence 00000 00 0000222222 2455677889988 99
Q ss_pred EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255 373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (765)
Q Consensus 373 saLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD 442 (765)
+||+.+-||++|++|+.||+ ++|||+.. .+++..+.. ...+|+.+.|.|-
T Consensus 281 TcLais~DgtlLlSGd~dg~-VcvWdi~S-----------------~Q~iRtl~~--~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDEDGK-VCVWDIYS-----------------KQCIRTLQT--SKGPVTNLQINPL 330 (476)
T ss_pred eEEEEecCccEEEeeCCCCC-EEEEecch-----------------HHHHHHHhh--hccccceeEeecc
Confidence 99999999999999999886 99999843 145544431 1246777877654
No 144
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=3.6e-09 Score=115.72 Aligned_cols=172 Identities=14% Similarity=0.250 Sum_probs=115.9
Q ss_pred CCEEEEEEC--CCCeEEEEEeCC-CCEEEEEecC--C-eEEEEeCC-eEEEEECCCCceeEE--EEecCCcccCCCCccc
Q 004255 172 PTAVRFYSF--QSHCYEHVLRFR-SSVCMVRCSP--R-IVAVGLAT-QIYCFDALTLENKFS--VLTYPVPQLAGQGAVG 242 (765)
Q Consensus 172 p~tV~lWdl--ktg~~v~tL~~~-s~V~sV~~s~--~-~LaV~~~~-~I~iwD~~t~~~l~t--l~t~p~p~~~~~~~~~ 242 (765)
+++++||-+ ++...++++.|. .+|...+|.+ . .++++.-. -.|.||+.+.+.... +.+.+.+
T Consensus 234 d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~--------- 304 (514)
T KOG2055|consen 234 DGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEK--------- 304 (514)
T ss_pred CCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccc---------
Confidence 478999966 567789999886 4888777766 3 55555443 499999988763221 1111110
Q ss_pred cccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeeccccccc
Q 004255 243 INVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 320 (765)
Q Consensus 243 ~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~ 320 (765)
....+.+++ .+||..+
T Consensus 305 ---~~e~FeVShd~~fia~~G----------------------------------------------------------- 322 (514)
T KOG2055|consen 305 ---SMERFEVSHDSNFIAIAG----------------------------------------------------------- 322 (514)
T ss_pred ---hhheeEecCCCCeEEEcc-----------------------------------------------------------
Confidence 122344444 3444433
Q ss_pred CCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 004255 321 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (765)
Q Consensus 321 ~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~ 400 (765)
..|.|.|.-..+++.+..|+- .+.|..++|+.||+.|..++.+| .|.|||+.
T Consensus 323 --------------------------~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~G-eV~v~nl~ 374 (514)
T KOG2055|consen 323 --------------------------NNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTG-EVYVWNLR 374 (514)
T ss_pred --------------------------cCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCc-eEEEEecC
Confidence 445566666666666666653 36789999999999998888878 59999996
Q ss_pred CCcccCCCCCCccccCCcceEEEEE--ecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 401 PSCMRSGSGNHKYDWNSSHVHLYKL--HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 401 ~~~~~~~sG~~~~~~~~s~~~l~~l--~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
.. .+++++ ..+.+ =+++|.|++|+|||+||..|.|.|||.+.
T Consensus 375 ~~-----------------~~~~rf~D~G~v~---gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 375 QN-----------------SCLHRFVDDGSVH---GTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred Cc-----------------ceEEEEeecCccc---eeeeeecCCCceEEeccCcceEEEeccch
Confidence 42 234443 22222 36789999999999999999999999765
No 145
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.16 E-value=2.1e-10 Score=125.94 Aligned_cols=226 Identities=20% Similarity=0.237 Sum_probs=138.4
Q ss_pred EEEEeCCCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEec
Q 004255 186 EHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS 261 (765)
Q Consensus 186 v~tL~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas 261 (765)
+++|.+-.-|+++.++. +.+.+|..+.|+|||+..-....-+.. .+++. .-|+ ...+-|.| |-|-.++
T Consensus 413 ~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~Pvsq--Ldcl~-----rdny-iRSckL~pdgrtLivGG 484 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQ--LDCLN-----RDNY-IRSCKLLPDGRTLIVGG 484 (705)
T ss_pred hhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCcccc--ccccC-----cccc-eeeeEecCCCceEEecc
Confidence 44555556789999876 788899899999999976533222111 10000 0111 23455655 6666665
Q ss_pred CCceecCCccccCCCCCC-CCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccc
Q 004255 262 NTLLLSNSGRLSPQNLTP-SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRH 340 (765)
Q Consensus 262 ~~~~~~~~G~~s~~~lt~-~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~ 340 (765)
... ..-.||...+ +.+-... ++.+ -|.| ++..+++.+.
T Consensus 485 eas-----tlsiWDLAapTprikael-tssa--paCy------------------------------ALa~spDakv--- 523 (705)
T KOG0639|consen 485 EAS-----TLSIWDLAAPTPRIKAEL-TSSA--PACY------------------------------ALAISPDAKV--- 523 (705)
T ss_pred ccc-----eeeeeeccCCCcchhhhc-CCcc--hhhh------------------------------hhhcCCccce---
Confidence 521 1124665544 1111000 0000 0111 2223333332
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc----------cCCCCC
Q 004255 341 AGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM----------RSGSGN 410 (765)
Q Consensus 341 ~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~----------~~~sG~ 410 (765)
-..+..||.|.|||+.+...+.+|++|+..+.||.+++||+.|-|++-| .++|-||++.... .+..-+
T Consensus 524 -cFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD-ntvRcWDlregrqlqqhdF~SQIfSLg~c 601 (705)
T KOG0639|consen 524 -CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD-NTVRCWDLREGRQLQQHDFSSQIFSLGYC 601 (705)
T ss_pred -eeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc-cceeehhhhhhhhhhhhhhhhhheecccC
Confidence 1246689999999999999999999999999999999999999999994 5699999976321 000011
Q ss_pred CccccC-------------CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 411 HKYDWN-------------SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 411 ~~~~~~-------------~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
..-+|- .+....|.|. .+..-|.++.|++-|+|+++.+.|+-+..|.. +||.
T Consensus 602 P~~dWlavGMens~vevlh~skp~kyqlh--lheScVLSlKFa~cGkwfvStGkDnlLnawrt-PyGa 666 (705)
T KOG0639|consen 602 PTGDWLAVGMENSNVEVLHTSKPEKYQLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT-PYGA 666 (705)
T ss_pred CCccceeeecccCcEEEEecCCccceeec--ccccEEEEEEecccCceeeecCchhhhhhccC-cccc
Confidence 112221 1112233442 34445999999999999999999999999985 4553
No 146
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.14 E-value=1.2e-09 Score=119.41 Aligned_cols=100 Identities=23% Similarity=0.286 Sum_probs=77.4
Q ss_pred CCCCeEEEEECCCCcE-EEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 346 DNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~~-i~~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
+.=|...+||+++++. ...++-|...|..|+|+|- -.+|||||.|++ .+|||++... +. .+ -.|+
T Consensus 298 ~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T-~kIWD~R~l~-----~K------~s-p~ls 364 (498)
T KOG4328|consen 298 DNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT-AKIWDLRQLR-----GK------AS-PFLS 364 (498)
T ss_pred ecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc-eeeeehhhhc-----CC------CC-ccee
Confidence 3446888999998764 6778889999999999995 567999999665 9999996521 11 11 1244
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
.+. |...|.+..|||+|-.|++.+.|.+|+|||..
T Consensus 365 t~~---HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 365 TLP---HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ccc---ccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 442 34569999999999889999999999999985
No 147
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.14 E-value=1.2e-09 Score=119.22 Aligned_cols=233 Identities=15% Similarity=0.118 Sum_probs=145.8
Q ss_pred CCCCeEEEEEecCc-EEEEEcc---CCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCC
Q 004255 72 SVFKQVLLLGYQNG-FQVLDVE---DASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPG 147 (765)
Q Consensus 72 ~~~~~vL~~G~~~G-~qVWdv~---~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~ 147 (765)
.+.++++++|...| +-+||+. +-..-.-++-.|.++|..|.+.|.- .+ .+...+
T Consensus 197 t~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n----------~s--~i~ssS---------- 254 (498)
T KOG4328|consen 197 TENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPAN----------TS--QIYSSS---------- 254 (498)
T ss_pred cCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCC----------hh--heeeec----------
Confidence 34578999999988 9999994 2222234667888999999999852 12 222211
Q ss_pred CCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeCCC-CEEEEEecC---CeEEEEeCCeEEEEECCCC
Q 004255 148 QNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRFRS-SVCMVRCSP---RIVAVGLATQIYCFDALTL 221 (765)
Q Consensus 148 ~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~--~v~tL~~~s-~V~sV~~s~---~~LaV~~~~~I~iwD~~t~ 221 (765)
+++++|+-|++++. .+.+++-.. ..+++.++. .+|++..-+...+||.++.
T Consensus 255 -----------------------yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~ 311 (498)
T KOG4328|consen 255 -----------------------YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTD 311 (498)
T ss_pred -----------------------cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecC
Confidence 35799999998764 333333122 345566653 4555554457899998876
Q ss_pred ce-eEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeee
Q 004255 222 EN-KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARY 297 (765)
Q Consensus 222 ~~-l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~ 297 (765)
.. ...++-|... .+.+++.| .+
T Consensus 312 ~s~~~~~~lh~kK-------------I~sv~~NP~~p~~----------------------------------------- 337 (498)
T KOG4328|consen 312 GSEYENLRLHKKK-------------ITSVALNPVCPWF----------------------------------------- 337 (498)
T ss_pred Cccchhhhhhhcc-------------cceeecCCCCchh-----------------------------------------
Confidence 53 2222222221 13344433 11
Q ss_pred hhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc----EEEEeccCCCCeE
Q 004255 298 AMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA----IISQFKAHTSPIS 373 (765)
Q Consensus 298 a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~----~i~~~~aH~~~Is 373 (765)
+++++.|++++|||++... ++...-.|..+|+
T Consensus 338 --------------------------------------------laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~ 373 (498)
T KOG4328|consen 338 --------------------------------------------LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVN 373 (498)
T ss_pred --------------------------------------------eeecccCcceeeeehhhhcCCCCcceecccccceee
Confidence 2345678899999997632 2334458999999
Q ss_pred EEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc-ccc--cEEEEEEccCCCEEEEEe
Q 004255 374 ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI-TSA--TIQDICFSHYSQWIAIVS 450 (765)
Q Consensus 374 aLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~-~~a--~I~slaFSpDg~~Las~S 450 (765)
+..|||+|-.|+|.+.|. .|||||..- . + +....+....-.+ +.. .....+|.||..+|+++-
T Consensus 374 sAyFSPs~gtl~TT~~D~-~IRv~dss~--~----s-------a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~ 439 (498)
T KOG4328|consen 374 SAYFSPSGGTLLTTCQDN-EIRVFDSSC--I----S-------AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGR 439 (498)
T ss_pred eeEEcCCCCceEeeccCC-ceEEeeccc--c----c-------ccCCccceeeccCcccccccchhheeCCCccEEEEec
Confidence 999999887799999955 599999731 0 0 0001111221000 101 244578999999999999
Q ss_pred CCCcEEEEeCC
Q 004255 451 SKGTCHVFVLS 461 (765)
Q Consensus 451 ~dgTVhIwdl~ 461 (765)
.-.-|-|||-+
T Consensus 440 ~~r~IDv~~~~ 450 (498)
T KOG4328|consen 440 YPRPIDVFDGN 450 (498)
T ss_pred cCcceeEEcCC
Confidence 98889998754
No 148
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.13 E-value=6.7e-11 Score=129.07 Aligned_cols=208 Identities=15% Similarity=0.179 Sum_probs=138.7
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEEEEEe--cCCeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccccee
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRC--SPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM 250 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~--s~~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~ 250 (765)
+.|-.+|..++.+.+++.....|.+|.| |.+++||+....+||||-. |..+++|+.+.. +..+
T Consensus 151 GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHClk~~~~--------------v~rL 215 (545)
T KOG1272|consen 151 GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCLKRHIR--------------VARL 215 (545)
T ss_pred cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeehhhcCc--------------hhhh
Confidence 5688899999999999999999999997 4589999999999999954 566888876432 2334
Q ss_pred EEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCC
Q 004255 251 AVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (765)
Q Consensus 251 Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~ 328 (765)
.|=| =+||.++... -..++..+ -|.+|+.+. .|. +- .-.
T Consensus 216 eFLPyHfLL~~~~~~G------~L~Y~DVS-----------~GklVa~~~--------t~~-----G~---------~~v 256 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAG------FLKYQDVS-----------TGKLVASIR--------TGA-----GR---------TDV 256 (545)
T ss_pred cccchhheeeecccCC------ceEEEeec-----------hhhhhHHHH--------ccC-----Cc---------cch
Confidence 4545 3455555442 22222221 133333211 010 00 000
Q ss_pred ccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 004255 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (765)
Q Consensus 329 ~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~s 408 (765)
...||- ++ .+-.+...|+|.+|.-.+.+++..+.+|.++|++|+++++|+|+||++. |+.++|||++..
T Consensus 257 m~qNP~---Na-Vih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~-Dr~~kIWDlR~~------ 325 (545)
T KOG1272|consen 257 MKQNPY---NA-VIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL-DRKVKIWDLRNF------ 325 (545)
T ss_pred hhcCCc---cc-eEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc-ccceeEeeeccc------
Confidence 111111 11 1224677899999999999999999999999999999999999999999 556999999642
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 409 G~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
.++..++ +......++||.-| .||. |.-..|+||.=.
T Consensus 326 -----------~ql~t~~---tp~~a~~ls~Sqkg-lLA~-~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 326 -----------YQLHTYR---TPHPASNLSLSQKG-LLAL-SYGDHVQIWKDA 362 (545)
T ss_pred -----------cccceee---cCCCcccccccccc-ceee-ecCCeeeeehhh
Confidence 2333333 22346779999776 3444 444569999643
No 149
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.12 E-value=7.7e-09 Score=117.54 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=71.0
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 004255 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (765)
Q Consensus 370 ~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~ 449 (765)
..+..|+.+|+.++++|+.. |+.|||||+.. |. ..+.++-.+++. +....+...|.|.|||++
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQ-Drnirif~i~s-------gK--------q~k~FKgs~~~e-G~lIKv~lDPSgiY~atS 659 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQ-DRNIRIFDIES-------GK--------QVKSFKGSRDHE-GDLIKVILDPSGIYLATS 659 (1080)
T ss_pred ceEEEeeeCCCcceEEEEec-ccceEEEeccc-------cc--------eeeeecccccCC-CceEEEEECCCccEEEEe
Confidence 46889999999999999999 55699999965 41 123333333332 356679999999999999
Q ss_pred eCCCcEEEEeCCCCCCCcccccccCCCCC
Q 004255 450 SSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478 (765)
Q Consensus 450 S~dgTVhIwdl~~~gg~~~~~~h~~~~~~ 478 (765)
..|.|+-+||.....+.....+|..-++|
T Consensus 660 csdktl~~~Df~sgEcvA~m~GHsE~VTG 688 (1080)
T KOG1408|consen 660 CSDKTLCFVDFVSGECVAQMTGHSEAVTG 688 (1080)
T ss_pred ecCCceEEEEeccchhhhhhcCcchheee
Confidence 99999999999887777777888765544
No 150
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1.1e-09 Score=122.47 Aligned_cols=98 Identities=19% Similarity=0.251 Sum_probs=77.8
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
....|+|||+.....+..+..-...|+.|+.+|.|.-|+.+|.|.+ +.+||+.- + ...|+-.
T Consensus 585 Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k-~~WfDldl-------s----------skPyk~l 646 (733)
T KOG0650|consen 585 TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK-MCWFDLDL-------S----------SKPYKTL 646 (733)
T ss_pred eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe-eEEEEccc-------C----------cchhHHh
Confidence 4568999999998888888877889999999999999999999665 88999843 1 1223322
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
|- |...|++++|++-=-.+|++|+|||++||--.-|
T Consensus 647 r~-H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY 682 (733)
T KOG0650|consen 647 RL-HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVY 682 (733)
T ss_pred hh-hhhhhhhhhhccccceeeeecCCCcEEEEeeeee
Confidence 33 3456999999999999999999999999965433
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.10 E-value=5.7e-09 Score=110.24 Aligned_cols=102 Identities=20% Similarity=0.290 Sum_probs=77.7
Q ss_pred CeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCC
Q 004255 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (765)
Q Consensus 75 ~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~ 154 (765)
.-+.+.|+.+-|+|.|+. .+++..-+-+|.+.|..+++.|. +|.|++ ++.
T Consensus 106 p~la~~G~~GvIrVid~~-~~~~~~~~~ghG~sINeik~~p~-------------~~qlvl-s~S--------------- 155 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVV-SGQCSKNYRGHGGSINEIKFHPD-------------RPQLVL-SAS--------------- 155 (385)
T ss_pred eeEEeecceeEEEEEecc-hhhhccceeccCccchhhhcCCC-------------CCcEEE-Eec---------------
Confidence 344555555559999994 67788889999999999998873 444444 221
Q ss_pred CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe----CCCCEEEEEecC--CeEEE-EeCCeEEEEECCCCc
Q 004255 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR----FRSSVCMVRCSP--RIVAV-GLATQIYCFDALTLE 222 (765)
Q Consensus 155 ~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~----~~s~V~sV~~s~--~~LaV-~~~~~I~iwD~~t~~ 222 (765)
.+..||+||++++.++..+- ++..|++|.++. ++|+. |.|.+|++|++...+
T Consensus 156 ----------------kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 156 ----------------KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred ----------------CCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence 24799999999999999985 467999999987 45554 677899999988543
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.09 E-value=3.1e-09 Score=112.18 Aligned_cols=100 Identities=19% Similarity=0.312 Sum_probs=85.7
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 345 ~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG-~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
++.-|.|+|.|+.++++...+.+|-..|+.|.|.|+- ++|++||. |+.||+|++++. .++.
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~Sk-D~svRlwnI~~~-----------------~Cv~ 172 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASK-DHSVRLWNIQTD-----------------VCVA 172 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecC-CceEEEEeccCC-----------------eEEE
Confidence 4567999999999999999999999999999999974 68889998 678999999762 4565
Q ss_pred EEe--cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 424 KLH--RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 424 ~l~--rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
.+- .| |+..|.++.|++||.+||+++.|.++++|+|+..
T Consensus 173 VfGG~eg-HrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 173 VFGGVEG-HRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred Eeccccc-ccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 552 22 4467999999999999999999999999999843
No 153
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1e-09 Score=111.89 Aligned_cols=101 Identities=19% Similarity=0.279 Sum_probs=75.2
Q ss_pred ccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEECCC---C-----------CEEEEEEcCCCEEEEEeCCCCcccC
Q 004255 344 DMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPS---G-----------TLLVTASVYGNNINIFRIMPSCMRS 406 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~---~~i~~~~aH~~~IsaLaFSpd---G-----------~lLATaS~dGt~IrVWdi~~~~~~~ 406 (765)
.+..||.|.|.++.+. .......+|.-.|+++++.|. | +.||||+. |+.|+||+...
T Consensus 121 casSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGc-Dn~VkiW~~~~----- 194 (299)
T KOG1332|consen 121 CASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGC-DNLVKIWKFDS----- 194 (299)
T ss_pred EeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCC-ccceeeeecCC-----
Confidence 4556788888777654 233446799999999999996 6 67999999 56799999743
Q ss_pred CCCCCccccCCcceEEEEEecccccccEEEEEEccCC----CEEEEEeCCCcEEEEeCCC
Q 004255 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS----QWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 407 ~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg----~~Las~S~dgTVhIwdl~~ 462 (765)
+. ..+-...+|+ ...|.++||.|.- .+||++|.||+|.||....
T Consensus 195 --~~---------w~~e~~l~~H-~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 195 --DS---------WKLERTLEGH-KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred --cc---------hhhhhhhhhc-chhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 10 2222223454 4679999999975 5799999999999998874
No 154
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.09 E-value=2.8e-07 Score=97.48 Aligned_cols=179 Identities=22% Similarity=0.293 Sum_probs=126.4
Q ss_pred CCEEEEEECCC-CeEEEEEeCC-CCEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 004255 172 PTAVRFYSFQS-HCYEHVLRFR-SSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (765)
Q Consensus 172 p~tV~lWdlkt-g~~v~tL~~~-s~V~sV~~s~--~~LaV~~--~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~ 245 (765)
++++++||... ...+..+..+ ..|..+.+++ +.++++. +..+++||+.+.+.+.++..|..+
T Consensus 133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 200 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP------------ 200 (466)
T ss_pred CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc------------
Confidence 46899999998 7777777765 5888899988 4566654 678999999987666666553321
Q ss_pred ccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCC
Q 004255 246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (765)
Q Consensus 246 ~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s 325 (765)
...+++ .... ..
T Consensus 201 -v~~~~~-------~~~~---------------------------~~--------------------------------- 212 (466)
T COG2319 201 -VSSLAF-------SPDG---------------------------GL--------------------------------- 212 (466)
T ss_pred -eEEEEE-------cCCc---------------------------ce---------------------------------
Confidence 111222 2110 00
Q ss_pred CCCccCCCccccccccccccCCCCeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc
Q 004255 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 404 (765)
Q Consensus 326 ~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~-~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~ 404 (765)
....+..|+.|++||...+..+. .+.+|...+ ...|+|++.++++++.++ .+++|++...
T Consensus 213 ---------------~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~-~~~~~~~~~~-- 273 (466)
T COG2319 213 ---------------LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDG-TIRLWDLRSS-- 273 (466)
T ss_pred ---------------EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCC-cEEEeeecCC--
Confidence 00112568899999999888888 699998886 448999999999898866 5999998642
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 405 ~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
. ..+..+ .++ ...|.++.|+|++..+++++.|+++++|++.....
T Consensus 274 ----~----------~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 274 ----S----------SLLRTL-SGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred ----C----------cEEEEE-ecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence 1 123333 232 45799999999999999999999999998776543
No 155
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=3.4e-08 Score=112.18 Aligned_cols=78 Identities=17% Similarity=0.124 Sum_probs=52.8
Q ss_pred EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 004255 373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (765)
Q Consensus 373 saLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d 452 (765)
..++|+|||++|+.++. +. +.+||+.. | .. ..+..+. ...+++|+|||++|+.++.+
T Consensus 336 ~~~~~SpDG~~ia~~~~-~~-i~~~Dl~~-------g----------~~-~~lt~~~---~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 336 YSAQISADGKTLVMING-DN-VVKQDLTS-------G----------ST-EVLSSTF---LDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred CCccCCCCCCEEEEEcC-CC-EEEEECCC-------C----------Ce-EEecCCC---CCCCceECCCCCEEEEEEcC
Confidence 45789999999998887 44 55689854 3 11 1222121 23568899999999999999
Q ss_pred CcEEEEeCCCCCC--Cccccccc
Q 004255 453 GTCHVFVLSPFGG--DSGFQTLS 473 (765)
Q Consensus 453 gTVhIwdl~~~gg--~~~~~~h~ 473 (765)
+.+.+|.+....| ...+.+|.
T Consensus 393 g~~~~l~~~~~~G~~~~~l~~~~ 415 (429)
T PRK01742 393 GLGKVLQLVSADGRFKARLPGSD 415 (429)
T ss_pred CCceEEEEEECCCCceEEccCCC
Confidence 9999998754333 23344554
No 156
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=1.8e-08 Score=114.58 Aligned_cols=189 Identities=19% Similarity=0.239 Sum_probs=127.3
Q ss_pred CCEEEEEECCCCeE-EEEEeC--CCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 004255 172 PTAVRFYSFQSHCY-EHVLRF--RSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (765)
Q Consensus 172 p~tV~lWdlktg~~-v~tL~~--~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~ 246 (765)
.+.|.||++..+=+ ...+.. ...|-++++.+ +++-+++.+.|.-||+.+++.++.+..... .
T Consensus 46 ~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg-------------~ 112 (691)
T KOG2048|consen 46 DGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGG-------------A 112 (691)
T ss_pred CCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCc-------------c
Confidence 36899999987643 233443 35899999874 677778889999999999998777653222 1
Q ss_pred cceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCC
Q 004255 247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (765)
Q Consensus 247 ~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~ 326 (765)
..++|+.| . +..
T Consensus 113 IWsiai~p-------~---------------------------~~~---------------------------------- 124 (691)
T KOG2048|consen 113 IWSIAINP-------E---------------------------NTI---------------------------------- 124 (691)
T ss_pred eeEEEeCC-------c---------------------------cce----------------------------------
Confidence 23444432 0 000
Q ss_pred CCccCCCccccccccccccCCCCeEEEEECCCCcEEE--EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc
Q 004255 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS--QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 404 (765)
Q Consensus 327 ~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~--~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~ 404 (765)
++-+..||.+..++...++... .|.-.++.|.+|+|+|+|+.||+||.|| .||+||+..
T Consensus 125 ---------------l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg-~Iriwd~~~--- 185 (691)
T KOG2048|consen 125 ---------------LAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG-VIRIWDVKS--- 185 (691)
T ss_pred ---------------EEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc-eEEEEEcCC---
Confidence 0123456766666666655432 3445578999999999999999999966 699999965
Q ss_pred cCCCCCCccccCCcceE-----EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccC
Q 004255 405 RSGSGNHKYDWNSSHVH-----LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (765)
Q Consensus 405 ~~~sG~~~~~~~~s~~~-----l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~ 474 (765)
|. ..+ +..+.++ ...-||++.|=.|+ .|++|.+.|+|.+||-....-...+..|..
T Consensus 186 ----~~--------t~~~~~~~~d~l~k~-~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a 246 (691)
T KOG2048|consen 186 ----GQ--------TLHIITMQLDRLSKR-EPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDA 246 (691)
T ss_pred ----Cc--------eEEEeeecccccccC-CceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhc
Confidence 21 012 2223222 23458999998776 688999999999999877655555555544
No 157
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.03 E-value=1.5e-08 Score=105.55 Aligned_cols=246 Identities=15% Similarity=0.198 Sum_probs=150.2
Q ss_pred CCeEEEEEec--------CcEEEEEccCCCcc-----eEeeee----ccCCEEEEEEecCCCCCCCCCCccccCCEEEEE
Q 004255 74 FKQVLLLGYQ--------NGFQVLDVEDASNF-----NELVSK----RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVV 136 (765)
Q Consensus 74 ~~~vL~~G~~--------~G~qVWdv~~~g~~-----~ells~----~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv 136 (765)
++++|++.|. .+.-||.+...-+- .|.++. +-|.|.+|++-|+. . .|+.+
T Consensus 75 d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns----------~---klasm 141 (370)
T KOG1007|consen 75 DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS----------D---KLASM 141 (370)
T ss_pred CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC----------C---eeEEe
Confidence 5789999997 34789999543222 233333 33789999999862 1 23332
Q ss_pred EcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-EEEEeCC------CCEEEEEecC----CeE
Q 004255 137 AGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-EHVLRFR------SSVCMVRCSP----RIV 205 (765)
Q Consensus 137 ~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~-v~tL~~~------s~V~sV~~s~----~~L 205 (765)
. ++.|.||++..+.. +..+.-+ ..-.+=+.+| +.+
T Consensus 142 ~----------------------------------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 142 D----------------------------------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred c----------------------------------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence 1 25799999987765 5555322 2334444555 688
Q ss_pred EEEeCCeEEEEECCCCceeEEEEe-cCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCC
Q 004255 206 AVGLATQIYCFDALTLENKFSVLT-YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (765)
Q Consensus 206 aV~~~~~I~iwD~~t~~~l~tl~t-~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~ 284 (765)
++..+.++.+||++|+++...|.. |--. +..+.+.| +.
T Consensus 188 ~tt~d~tl~~~D~RT~~~~~sI~dAHgq~-------------vrdlDfNp-------nk--------------------- 226 (370)
T KOG1007|consen 188 ATTSDSTLQFWDLRTMKKNNSIEDAHGQR-------------VRDLDFNP-------NK--------------------- 226 (370)
T ss_pred EEeCCCcEEEEEccchhhhcchhhhhcce-------------eeeccCCC-------Cc---------------------
Confidence 888899999999999987776653 2110 01112211 00
Q ss_pred CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC-cEEE
Q 004255 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIIS 363 (765)
Q Consensus 285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~-~~i~ 363 (765)
. --+++++.||.|+|||.+.- .++.
T Consensus 227 ---------------------------------------------------q---~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 227 ---------------------------------------------------Q---HILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ---------------------------------------------------e---EEEEEcCCCccEEEEeccCCCcccc
Confidence 0 01245678999999999764 5788
Q ss_pred EeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccC--CCCCCccc--cCCcceEEEEEecc------cccc
Q 004255 364 QFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRS--GSGNHKYD--WNSSHVHLYKLHRG------ITSA 432 (765)
Q Consensus 364 ~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~--~sG~~~~~--~~~s~~~l~~l~rG------~~~a 432 (765)
.+.+|...|.++.|+|. .++++|++.| ..+.+|....-.... ..+....+ -..+..+..-|.-| .+..
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~SD-s~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED 331 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGGSD-SAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED 331 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecCCC-ceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc
Confidence 99999999999999995 6678898885 458898763210000 00000000 00011111111111 2335
Q ss_pred cEEEEEEccCCCE-EEEEeCCCcEEEEeCCC
Q 004255 433 TIQDICFSHYSQW-IAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 433 ~I~slaFSpDg~~-Las~S~dgTVhIwdl~~ 462 (765)
.|++++||.-.-| +|+-|-||.+-|=.+.+
T Consensus 332 SVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 332 SVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 6999999977667 56678899998866654
No 158
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=2.5e-08 Score=111.92 Aligned_cols=312 Identities=16% Similarity=0.136 Sum_probs=177.6
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCE
Q 004255 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (765)
Q Consensus 54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpL 132 (765)
+|++.|.....|- .+..|+.|.++| ++||-+. +|.|...+.- |+-|++|+|.|.+ +.++
T Consensus 398 GHtg~Vr~iSvdp-------~G~wlasGsdDGtvriWEi~-TgRcvr~~~~-d~~I~~vaw~P~~-----------~~~v 457 (733)
T KOG0650|consen 398 GHTGLVRSISVDP-------SGEWLASGSDDGTVRIWEIA-TGRCVRTVQF-DSEIRSVAWNPLS-----------DLCV 457 (733)
T ss_pred ccCCeEEEEEecC-------CcceeeecCCCCcEEEEEee-cceEEEEEee-cceeEEEEecCCC-----------Ccee
Confidence 4556666555443 477999999998 9999994 6777666654 4689999999874 4578
Q ss_pred EEEEEcCCCCCCCCCCCcCCCCCcccCCcC---CCCCCCCCCCCEEEEEECC---CCe--EEEEEeCCCCEEEEEecC--
Q 004255 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMD---SQSGNCVNSPTAVRFYSFQ---SHC--YEHVLRFRSSVCMVRCSP-- 202 (765)
Q Consensus 133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~---~~~~~~~~~p~tV~lWdlk---tg~--~v~tL~~~s~V~sV~~s~-- 202 (765)
||+..++...-..+ .++ .-+-.+..+ ....+....+..|-.|.-. .++ .-.++++..+|..|...+
T Consensus 458 LAvA~~~~~~ivnp--~~G--~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 458 LAVAVGECVLIVNP--IFG--DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred EEEEecCceEEeCc--ccc--chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 88755432100000 000 000000000 0000111234578889643 222 234567888999999887
Q ss_pred CeEEEEeC----CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCC
Q 004255 203 RIVAVGLA----TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQN 276 (765)
Q Consensus 203 ~~LaV~~~----~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~ 276 (765)
++||+... ..|.|+++...+-. .| +.........+.|.| -+|-.++...+ +..+.
T Consensus 534 DYlatV~~~~~~~~VliHQLSK~~sQ-------~P------F~kskG~vq~v~FHPs~p~lfVaTq~~v------RiYdL 594 (733)
T KOG0650|consen 534 DYLATVMPDSGNKSVLIHQLSKRKSQ-------SP------FRKSKGLVQRVKFHPSKPYLFVATQRSV------RIYDL 594 (733)
T ss_pred ceEEEeccCCCcceEEEEeccccccc-------Cc------hhhcCCceeEEEecCCCceEEEEeccce------EEEeh
Confidence 68887654 35999987644211 11 000000112244555 23333322110 00000
Q ss_pred CCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEEC
Q 004255 277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 356 (765)
Q Consensus 277 lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl 356 (765)
. ..+..|.+..|. |-++ .++..+.+. .+.-++.|+.+..+|+
T Consensus 595 ~--------------------kqelvKkL~tg~-kwiS-------------~msihp~GD----nli~gs~d~k~~WfDl 636 (733)
T KOG0650|consen 595 S--------------------KQELVKKLLTGS-KWIS-------------SMSIHPNGD----NLILGSYDKKMCWFDL 636 (733)
T ss_pred h--------------------HHHHHHHHhcCC-eeee-------------eeeecCCCC----eEEEecCCCeeEEEEc
Confidence 0 001123333332 1111 111111111 1335678999999999
Q ss_pred CCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc--CCcceEEEEEeccccc--
Q 004255 357 VTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW--NSSHVHLYKLHRGITS-- 431 (765)
Q Consensus 357 ~s~-~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~--~~s~~~l~~l~rG~~~-- 431 (765)
.-. ++..+++-|...|.+++|++.=.++|+||.||+ +.||--+- ..|+ ..-...+..|+ |+..
T Consensus 637 dlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt-v~Vfhg~V----------Y~Dl~qnpliVPlK~L~-gH~~~~ 704 (733)
T KOG0650|consen 637 DLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT-VIVFHGMV----------YNDLLQNPLIVPLKRLR-GHEKTN 704 (733)
T ss_pred ccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc-EEEEeeee----------ehhhhcCCceEeeeecc-Cceeec
Confidence 754 577889999999999999999999999999876 66774321 1111 11124555553 4432
Q ss_pred -ccEEEEEEccCCCEEEEEeCCCcEEEE
Q 004255 432 -ATIQDICFSHYSQWIAIVSSKGTCHVF 458 (765)
Q Consensus 432 -a~I~slaFSpDg~~Las~S~dgTVhIw 458 (765)
--|.++.|+|.--||.+++.||||++|
T Consensus 705 ~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 705 DLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccceEeecccCCCceEEecCCCceEEee
Confidence 138899999999999999999999998
No 159
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.02 E-value=6.3e-09 Score=117.45 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=74.2
Q ss_pred CCCCeEEEEECCCCcEEE--------EeccC---CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccc
Q 004255 346 DNAGIVVVKDFVTRAIIS--------QFKAH---TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 414 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~~i~--------~~~aH---~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~ 414 (765)
..|+.|+|||+....... .+.-| .-.+.+|..+..|++|.....|+ .|..|++..+..
T Consensus 237 a~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~-sIy~ynm~s~s~---------- 305 (720)
T KOG0321|consen 237 AADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN-SIYFYNMRSLSI---------- 305 (720)
T ss_pred CCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC-cEEEEeccccCc----------
Confidence 359999999998653221 22233 33688999999999886666655 599999865310
Q ss_pred cCCcceEEEEEecccccccE-EEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcc-cccccCC
Q 004255 415 WNSSHVHLYKLHRGITSATI-QDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG-FQTLSSQ 475 (765)
Q Consensus 415 ~~~s~~~l~~l~rG~~~a~I-~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~-~~~h~~~ 475 (765)
..+..+ .|..+..+ ..-..|||+.+|++++.|+.+.+|.++.....+. +.+|+..
T Consensus 306 -----sP~~~~-sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~e 362 (720)
T KOG0321|consen 306 -----SPVAEF-SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTRE 362 (720)
T ss_pred -----Cchhhc-cCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceE
Confidence 111111 12111111 1234799999999999999999999988766554 4567543
No 160
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=1.6e-07 Score=106.84 Aligned_cols=213 Identities=17% Similarity=0.130 Sum_probs=126.8
Q ss_pred cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCC
Q 004255 85 GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQ 164 (765)
Q Consensus 85 G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~ 164 (765)
.+.|||.+ ..+.+. +-.+.+.+...+++|+. ..||.+..+.
T Consensus 180 ~l~~~d~d-g~~~~~-lt~~~~~~~~p~wSPDG-------------~~la~~s~~~------------------------ 220 (429)
T PRK03629 180 ELRVSDYD-GYNQFV-VHRSPQPLMSPAWSPDG-------------SKLAYVTFES------------------------ 220 (429)
T ss_pred eEEEEcCC-CCCCEE-eecCCCceeeeEEcCCC-------------CEEEEEEecC------------------------
Confidence 37777764 334444 44456789999999862 2566544211
Q ss_pred CCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe--CC--eEEEEECCCCceeEEEEecCCcccCCC
Q 004255 165 SGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--AT--QIYCFDALTLENKFSVLTYPVPQLAGQ 238 (765)
Q Consensus 165 ~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~--~~--~I~iwD~~t~~~l~tl~t~p~p~~~~~ 238 (765)
....|.+||+.+|+......++..+.+++++| +.|+... ++ +|++||+.+++.. .+.....
T Consensus 221 ------g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~------ 287 (429)
T PRK03629 221 ------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRS------ 287 (429)
T ss_pred ------CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCC------
Confidence 01479999999997665555666666788887 5666542 22 5999999887643 2221111
Q ss_pred CccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeeccc
Q 004255 239 GAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKY 316 (765)
Q Consensus 239 ~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~ 316 (765)
.....+++| ++|+|.++..
T Consensus 288 -------~~~~~~wSPDG~~I~f~s~~~---------------------------------------------------- 308 (429)
T PRK03629 288 -------NNTEPTWFPDSQNLAYTSDQA---------------------------------------------------- 308 (429)
T ss_pred -------CcCceEECCCCCEEEEEeCCC----------------------------------------------------
Confidence 012345555 5555554210
Q ss_pred ccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEE
Q 004255 317 CQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNI 394 (765)
Q Consensus 317 ~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG--t~I 394 (765)
..-.|.++|+.+++. ..+..+.......+|+|||++|+..+.++ ..|
T Consensus 309 ------------------------------g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I 357 (429)
T PRK03629 309 ------------------------------GRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHI 357 (429)
T ss_pred ------------------------------CCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceE
Confidence 001344456655543 33333444556789999999998877543 347
Q ss_pred EEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCc---EEEEeC
Q 004255 395 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGT---CHVFVL 460 (765)
Q Consensus 395 rVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgT---VhIwdl 460 (765)
.+||+.. | ....+..+. ...+.+|||||++|+.++.++. +.++++
T Consensus 358 ~~~dl~~-------g-----------~~~~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 358 AKQDLAT-------G-----------GVQVLTDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred EEEECCC-------C-----------CeEEeCCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 7788754 2 122333221 2346889999999999998876 445555
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.98 E-value=4.2e-08 Score=105.31 Aligned_cols=112 Identities=16% Similarity=0.311 Sum_probs=71.6
Q ss_pred cccCCCCeEEEEECCC---CcEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCC--CccccC
Q 004255 343 ADMDNAGIVVVKDFVT---RAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGN--HKYDWN 416 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s---~~~i~~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~--~~~~~~ 416 (765)
++++.+|+++|||++. ++++++|+-|..||++|.|+|. ...||.++. +..|.|||+.........+. .....+
T Consensus 318 asG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~-D~QitiWDlsvE~D~ee~~~~a~~~L~d 396 (440)
T KOG0302|consen 318 ASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE-DNQITIWDLSVEADEEEIDQEAAEGLQD 396 (440)
T ss_pred eecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC-CCcEEEEEeeccCChhhhccccccchhc
Confidence 4677899999999875 5789999999999999999994 344555555 45699999965321000000 000000
Q ss_pred CcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEe
Q 004255 417 SSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFV 459 (765)
Q Consensus 417 ~s~~~l~~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwd 459 (765)
--.+.|+ .+.|. ..|-.+.|++.- .+|++.+.||. .||.
T Consensus 397 lPpQLLF-VHqGQ--ke~KevhWH~QiPG~lvsTa~dGf-nVfk 436 (440)
T KOG0302|consen 397 LPPQLLF-VHQGQ--KEVKEVHWHRQIPGLLVSTAIDGF-NVFK 436 (440)
T ss_pred CCceeEE-Eecch--hHhhhheeccCCCCeEEEecccce-eEEE
Confidence 0112333 33343 358889999875 57888888884 4553
No 162
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=8.6e-09 Score=109.43 Aligned_cols=186 Identities=17% Similarity=0.196 Sum_probs=124.5
Q ss_pred CEEEEEECCCCeEEEEEeCC-CCEEEEEe----cCCeEEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 004255 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRC----SPRIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~-s~V~sV~~----s~~~LaV-~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~ 246 (765)
+.|++||..||+.+..++.+ ..+-.|+| ++..|.+ +.++.|++||+++......+..-..| + .+
T Consensus 50 gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-----~-----~~ 119 (376)
T KOG1188|consen 50 GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-----G-----TP 119 (376)
T ss_pred CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-----C-----Cc
Confidence 68999999999999999875 34444444 4455554 55779999999987665555421111 0 01
Q ss_pred cceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCC
Q 004255 247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (765)
Q Consensus 247 ~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~ 324 (765)
+.+++++. +.+|.+...
T Consensus 120 f~~ld~nck~~ii~~GtE~------------------------------------------------------------- 138 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTEL------------------------------------------------------------- 138 (376)
T ss_pred ceEeeccCcCCeEEecccc-------------------------------------------------------------
Confidence 23344432 233332210
Q ss_pred CCCCccCCCccccccccccccCCCCeEEEEECCCCcE-EEE-eccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCC
Q 004255 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQ-FKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMP 401 (765)
Q Consensus 325 s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~-i~~-~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~ 401 (765)
...+-.|.+||++..+. +.. +..|..-|++|+|+| +-++|+|||.|| .|+|||++-
T Consensus 139 --------------------~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG-LvnlfD~~~ 197 (376)
T KOG1188|consen 139 --------------------TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG-LVNLFDTKK 197 (376)
T ss_pred --------------------ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccc-eEEeeecCC
Confidence 01244789999988654 444 468999999999999 567999999976 699999964
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCCC
Q 004255 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 402 ~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~gg~ 466 (765)
.. . ....+..+. +...|-++.|..++ +.|.+-+..+|..+|+++....+
T Consensus 198 d~---E----------eDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 198 DN---E----------EDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred Cc---c----------hhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 20 0 002223332 22459999999888 55889999999999999986543
No 163
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.97 E-value=8.2e-09 Score=106.39 Aligned_cols=69 Identities=23% Similarity=0.297 Sum_probs=54.7
Q ss_pred eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 004255 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS 451 (765)
Q Consensus 372 IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~ 451 (765)
|+.+..-||++.||||+.|+. ||||..++ + ..|..|.. |.+.|.+++||||...+|++|.
T Consensus 254 v~gvrIRpD~KIlATAGWD~R-iRVyswrt-------l----------~pLAVLky--Hsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATAGWDHR-IRVYSWRT-------L----------NPLAVLKY--HSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred ccceEEccCCcEEeecccCCc-EEEEEecc-------C----------Cchhhhhh--hhcceeEEEeCCCCchhhhccC
Confidence 344556688899999999776 89998765 2 35555542 4467999999999999999999
Q ss_pred CCcEEEEeC
Q 004255 452 KGTCHVFVL 460 (765)
Q Consensus 452 dgTVhIwdl 460 (765)
|++|-+|++
T Consensus 314 D~rISLWkL 322 (323)
T KOG0322|consen 314 DARISLWKL 322 (323)
T ss_pred CceEEeeec
Confidence 999999986
No 164
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=6e-07 Score=102.19 Aligned_cols=204 Identities=15% Similarity=0.154 Sum_probs=123.6
Q ss_pred EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCC
Q 004255 86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS 165 (765)
Q Consensus 86 ~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~ 165 (765)
+.+||. .+.-.+.+..+.++|...++.|+. ..|+.+....
T Consensus 184 l~~~d~--dg~~~~~lt~~~~~v~~p~wSpDG-------------~~lay~s~~~------------------------- 223 (435)
T PRK05137 184 LAIMDQ--DGANVRYLTDGSSLVLTPRFSPNR-------------QEITYMSYAN------------------------- 223 (435)
T ss_pred EEEECC--CCCCcEEEecCCCCeEeeEECCCC-------------CEEEEEEecC-------------------------
Confidence 555555 344445566777899999999862 2556544211
Q ss_pred CCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeC----CeEEEEECCCCceeEEEEecCCcccCCCC
Q 004255 166 GNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA----TQIYCFDALTLENKFSVLTYPVPQLAGQG 239 (765)
Q Consensus 166 ~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~----~~I~iwD~~t~~~l~tl~t~p~p~~~~~~ 239 (765)
....|.+||+.+|+......+...+.+.+++| +.|+.... ..|++||+.+++. ..|..++..
T Consensus 224 -----g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~------ 291 (435)
T PRK05137 224 -----GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAI------ 291 (435)
T ss_pred -----CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCc------
Confidence 02479999999988755445677778888887 56654432 2599999988764 333222210
Q ss_pred ccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccc
Q 004255 240 AVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC 317 (765)
Q Consensus 240 ~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~ 317 (765)
....+++| ++|+|.++.
T Consensus 292 -------~~~~~~spDG~~i~f~s~~------------------------------------------------------ 310 (435)
T PRK05137 292 -------DTSPSYSPDGSQIVFESDR------------------------------------------------------ 310 (435)
T ss_pred -------cCceeEcCCCCEEEEEECC------------------------------------------------------
Confidence 12234554 455554321
Q ss_pred cccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEE
Q 004255 318 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNIN 395 (765)
Q Consensus 318 ~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG--t~Ir 395 (765)
.....|.++|+.+++. ..+..+...+...+|+|||++||..+.++ ..|.
T Consensus 311 ----------------------------~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~ 361 (435)
T PRK05137 311 ----------------------------SGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIG 361 (435)
T ss_pred ----------------------------CCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEE
Confidence 0012577778776554 33433445567789999999999877543 3567
Q ss_pred EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 004255 396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (765)
Q Consensus 396 VWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d 452 (765)
+||+.. + ....+..+ ..+.+.+|||||++|+..+.+
T Consensus 362 ~~d~~~-------~-----------~~~~lt~~---~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 362 VMKPDG-------S-----------GERILTSG---FLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred EEECCC-------C-----------ceEeccCC---CCCCCCeECCCCCEEEEEEcc
Confidence 777632 1 11223222 236778999999999887654
No 165
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.95 E-value=4.8e-08 Score=111.36 Aligned_cols=252 Identities=14% Similarity=0.134 Sum_probs=147.5
Q ss_pred CeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCC
Q 004255 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (765)
Q Consensus 75 ~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~ 154 (765)
+..++-|....|+|||-... .....+.+|.++|.|+.++|.-. + -+.+ |+|+
T Consensus 25 ~~~vafGa~~~Iav~dp~k~-~i~t~l~GH~a~VnC~~~l~~s~-------~---~a~~--vsG~--------------- 76 (764)
T KOG1063|consen 25 GGLVAFGAGPAIAVADPEKI-LIVTTLDGHVARVNCVHWLPTSE-------I---VAEM--VSGD--------------- 76 (764)
T ss_pred cceEEecCCceEEEeCcccc-eeEEeccCCccceEEEEEccccc-------c---cceE--EEcc---------------
Confidence 55788888888999998654 35567889999999999998521 1 1233 3342
Q ss_pred CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC---CCEEEEEecCCeEEE-EeCCeEEEEECCCCc--eeEEEE
Q 004255 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSPRIVAV-GLATQIYCFDALTLE--NKFSVL 228 (765)
Q Consensus 155 ~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~---s~V~sV~~s~~~LaV-~~~~~I~iwD~~t~~--~l~tl~ 228 (765)
++++|++|-++....++.+.+. ..+.+|...+....+ +.++.+++||...-+ ++..+.
T Consensus 77 ----------------sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~r 140 (764)
T KOG1063|consen 77 ----------------SDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLR 140 (764)
T ss_pred ----------------CCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehhee
Confidence 2579999999855555544433 245555555544444 567789999985443 222221
Q ss_pred ecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcc
Q 004255 229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (765)
Q Consensus 229 t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G 308 (765)
- .... .-++.| +...++ +++
T Consensus 141 f-~~k~------------~ipLcL-----~~~~~~---------------------------~~~--------------- 160 (764)
T KOG1063|consen 141 F-EIKE------------AIPLCL-----AALKNN---------------------------KTF--------------- 160 (764)
T ss_pred h-hhhh------------HhhHHH-----hhhccC---------------------------CcE---------------
Confidence 0 0000 000000 000000 000
Q ss_pred cceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC--CCcEEEEeccCCCCeEEEEECCCCC---E
Q 004255 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV--TRAIISQFKAHTSPISALCFDPSGT---L 383 (765)
Q Consensus 309 ~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~--s~~~i~~~~aH~~~IsaLaFSpdG~---l 383 (765)
.++-++.+..|.|+--. .-+.+..+++|+..|..|+|...|. +
T Consensus 161 --------------------------------lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~ 208 (764)
T KOG1063|consen 161 --------------------------------LLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLL 208 (764)
T ss_pred --------------------------------EEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEE
Confidence 00111222233333222 2356788999999999999998655 7
Q ss_pred EEEEEcCCCEEEEEeCCCCcccC-CCC----CCccccCCcceEEEEE---------ecccccccEEEEEEccCCCEEEEE
Q 004255 384 LVTASVYGNNINIFRIMPSCMRS-GSG----NHKYDWNSSHVHLYKL---------HRGITSATIQDICFSHYSQWIAIV 449 (765)
Q Consensus 384 LATaS~dGt~IrVWdi~~~~~~~-~sG----~~~~~~~~s~~~l~~l---------~rG~~~a~I~slaFSpDg~~Las~ 449 (765)
|||+|. |+.||||.+...-..+ ... +.-++ ......+.++ .-|+ ...|+++.|+|++..|.++
T Consensus 209 laS~SQ-D~yIRiW~i~~~~~~~~~~~e~~~t~~~~-~~~f~~l~~i~~~is~eall~GH-eDWV~sv~W~p~~~~LLSA 285 (764)
T KOG1063|consen 209 LASSSQ-DRYIRIWRIVLGDDEDSNEREDSLTTLSN-LPVFMILEEIQYRISFEALLMGH-EDWVYSVWWHPEGLDLLSA 285 (764)
T ss_pred EEecCC-ceEEEEEEEEecCCccccccccccccccC-CceeeeeeeEEEEEehhhhhcCc-ccceEEEEEccchhhheec
Confidence 888888 6789999986521000 000 00000 0111122122 2354 3579999999999999999
Q ss_pred eCCCcEEEEeCCCCCC
Q 004255 450 SSKGTCHVFVLSPFGG 465 (765)
Q Consensus 450 S~dgTVhIwdl~~~gg 465 (765)
|.|.|+.||.-....|
T Consensus 286 SaDksmiiW~pd~~tG 301 (764)
T KOG1063|consen 286 SADKSMIIWKPDENTG 301 (764)
T ss_pred ccCcceEEEecCCccc
Confidence 9999999998776533
No 166
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.93 E-value=2.9e-09 Score=122.74 Aligned_cols=279 Identities=17% Similarity=0.198 Sum_probs=176.1
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
.-+|..-|.+|-||+ .++.+++||++- ++||..+ ++.+...+.+|.|.++.+++. .++
T Consensus 186 LlgH~naVyca~fDr-------tg~~Iitgsdd~lvKiwS~e-t~~~lAs~rGhs~ditdlavs-------------~~n 244 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDR-------TGRYIITGSDDRLVKIWSME-TARCLASCRGHSGDITDLAVS-------------SNN 244 (1113)
T ss_pred HHhhhhheeeeeecc-------ccceEeecCccceeeeeecc-chhhhccCCCCccccchhccc-------------hhh
Confidence 556788899999998 367899999997 7999974 577888889999999998876 222
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEEEe
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL 209 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV~~ 209 (765)
-++|..+ .+..|++|-+.++..|..|..+ +.|.+|+|+|+. +.+.
T Consensus 245 ~~iaaaS---------------------------------~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-sss~ 290 (1113)
T KOG0644|consen 245 TMIAAAS---------------------------------NDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-SSSD 290 (1113)
T ss_pred hhhhhcc---------------------------------cCceEEEEecCCCchHHHHhccccceeeeccCccc-cCCC
Confidence 3443311 2478999999999999999865 699999999976 5666
Q ss_pred CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCC
Q 004255 210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (765)
Q Consensus 210 ~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~ 289 (765)
++++.+||+. ++ .+...|.|-. +.... -..++-+-..|.++.... .
T Consensus 291 dgt~~~wd~r-~~---~~~y~prp~~----~~~~~-~~~s~~~~~~~~~f~Tgs--------~----------------- 336 (1113)
T KOG0644|consen 291 DGTCRIWDAR-LE---PRIYVPRPLK----FTEKD-LVDSILFENNGDRFLTGS--------R----------------- 336 (1113)
T ss_pred CCceEecccc-cc---ccccCCCCCC----ccccc-ceeeeecccccccccccc--------C-----------------
Confidence 7899999987 22 2222333310 00000 001111111222222110 0
Q ss_pred CCcceeeehhhhhhhhhccccee-ecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC
Q 004255 290 GSSLVARYAMEHSKQFAAGLSKT-LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH 368 (765)
Q Consensus 290 ~gslva~~a~d~~k~la~G~~kt-ls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH 368 (765)
+..++ ..++..-..+. +-.|. ...+ + ... -..++-.+-.+.+|++.++...+.+.+|
T Consensus 337 --d~ea~-----n~e~~~l~~~~~~lif~----t~ss--------d--~~~-~~~~ar~~~~~~vwnl~~g~l~H~l~gh 394 (1113)
T KOG0644|consen 337 --DGEAR-----NHEFEQLAWRSNLLIFV----TRSS--------D--LSS-IVVTARNDHRLCVWNLYTGQLLHNLMGH 394 (1113)
T ss_pred --Ccccc-----cchhhHhhhhccceEEE----eccc--------c--ccc-cceeeeeeeEeeeeecccchhhhhhccc
Confidence 00000 00000000000 00000 0000 0 000 0113345678889999999999999999
Q ss_pred CCCeEEEEECCCCCEE-EEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 004255 369 TSPISALCFDPSGTLL-VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (765)
Q Consensus 369 ~~~IsaLaFSpdG~lL-ATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~La 447 (765)
..++..|.|+|-...+ .+|+.||+ +-|||+.. | ...+.|. .| ...+.+.+||+||+.++
T Consensus 395 sd~~yvLd~Hpfn~ri~msag~dgs-t~iwdi~e-------g--------~pik~y~--~g--h~kl~d~kFSqdgts~~ 454 (1113)
T KOG0644|consen 395 SDEVYVLDVHPFNPRIAMSAGYDGS-TIIWDIWE-------G--------IPIKHYF--IG--HGKLVDGKFSQDGTSIA 454 (1113)
T ss_pred ccceeeeeecCCCcHhhhhccCCCc-eEeeeccc-------C--------Ccceeee--cc--cceeeccccCCCCceEe
Confidence 9999999999966554 57888776 67999943 3 2234444 34 24578899999999999
Q ss_pred EEeCCCcEEEEeCC
Q 004255 448 IVSSKGTCHVFVLS 461 (765)
Q Consensus 448 s~S~dgTVhIwdl~ 461 (765)
...+-|.+.|+...
T Consensus 455 lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 455 LSDDHGQLYILGTG 468 (1113)
T ss_pred cCCCCCceEEeccC
Confidence 99999998887654
No 167
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.92 E-value=1.4e-06 Score=92.13 Aligned_cols=223 Identities=17% Similarity=0.228 Sum_probs=148.0
Q ss_pred EecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccC
Q 004255 81 GYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDG 159 (765)
Q Consensus 81 G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g 159 (765)
+..+ .+++||+.........+..|...|..+.+.|+. ..+++ +..
T Consensus 130 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~~--~~~------------------- 175 (466)
T COG2319 130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-------------KLLAS--GSS------------------- 175 (466)
T ss_pred CCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-------------CEEEe--cCC-------------------
Confidence 4424 499999964245667788888899999988742 13433 210
Q ss_pred CcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecCC---eEEE-EeCCeEEEEECCCCceeE-EEEecCCc
Q 004255 160 MMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR---IVAV-GLATQIYCFDALTLENKF-SVLTYPVP 233 (765)
Q Consensus 160 ~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~~---~LaV-~~~~~I~iwD~~t~~~l~-tl~t~p~p 233 (765)
.++.+++|++.++..+..+.. ...|..+++++. +++. +.++.|++||..+++... .+..|...
T Consensus 176 -----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 244 (466)
T COG2319 176 -----------LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244 (466)
T ss_pred -----------CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc
Confidence 136899999999999999986 468999998873 3444 456679999888666555 23333321
Q ss_pred ccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceee
Q 004255 234 QLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTL 313 (765)
Q Consensus 234 ~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktl 313 (765)
....+++ .+ .
T Consensus 245 --------------~~~~~~~----------------------------------~~-~--------------------- 254 (466)
T COG2319 245 --------------VVSSFSP----------------------------------DG-S--------------------- 254 (466)
T ss_pred --------------eeEeECC----------------------------------CC-C---------------------
Confidence 0001111 00 0
Q ss_pred cccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE-EEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 004255 314 SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPSGTLLVTASVYGN 392 (765)
Q Consensus 314 s~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~-i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt 392 (765)
....+..++.+++||+..... +..+..|..+|.++.|+|++..+++++.| .
T Consensus 255 ---------------------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-~ 306 (466)
T COG2319 255 ---------------------------LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD-G 306 (466)
T ss_pred ---------------------------EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCC-C
Confidence 001235688999999987664 55557899999999999999999998887 5
Q ss_pred EEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-cccccccEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCC
Q 004255 393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFG 464 (765)
Q Consensus 393 ~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~-rG~~~a~I~slaFSpDg~~Las~-S~dgTVhIwdl~~~g 464 (765)
.+++||+... ....... .++ ...|..+.|++++..++.+ ..|+.+.+|++....
T Consensus 307 ~~~~~~~~~~-----------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 307 TVRLWDLETG-----------------KLLSSLTLKGH-EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred cEEEEEcCCC-----------------ceEEEeeeccc-CCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 5999987541 1222221 222 2358899995443566666 688999999998754
No 168
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.92 E-value=1.1e-06 Score=94.51 Aligned_cols=194 Identities=19% Similarity=0.287 Sum_probs=126.9
Q ss_pred EEEEEECCCCeEEEEEeCC----CCEEEEEecCC--eEEEEe---CCeEEEEECCCCceeEEEEecCCcccCCCCccccc
Q 004255 174 AVRFYSFQSHCYEHVLRFR----SSVCMVRCSPR--IVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 244 (765)
Q Consensus 174 tV~lWdlktg~~v~tL~~~----s~V~sV~~s~~--~LaV~~---~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~ 244 (765)
.|.|||+++-+++|+++-. ..+.++.+|.. +||.=. .+.|++||+.+++..-+|..|..+
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~----------- 175 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP----------- 175 (391)
T ss_pred cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc-----------
Confidence 5999999999999999743 25777777773 787522 346999999999988888887663
Q ss_pred cccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCC
Q 004255 245 VGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 322 (765)
Q Consensus 245 ~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p 322 (765)
...+||++ .+||.+++
T Consensus 176 --lAalafs~~G~llATASe------------------------------------------------------------ 193 (391)
T KOG2110|consen 176 --LAALAFSPDGTLLATASE------------------------------------------------------------ 193 (391)
T ss_pred --eeEEEECCCCCEEEEecc------------------------------------------------------------
Confidence 24566655 45555543
Q ss_pred CCCCCCccCCCccccccccccccCCCC-eEEEEECCCCcEEEEeccCC--CCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255 323 DGSSSPVSPNSVWKVGRHAGADMDNAG-IVVVKDFVTRAIISQFKAHT--SPISALCFDPSGTLLVTASVYGNNINIFRI 399 (765)
Q Consensus 323 ~~s~~~~s~s~~~~~~~~~~~~~~~dG-~V~IwDl~s~~~i~~~~aH~--~~IsaLaFSpdG~lLATaS~dGt~IrVWdi 399 (765)
.| .|||+++.+|+.+.+|+.-. ..|.+|+|+||+++|+..|..++ |+||.+
T Consensus 194 -------------------------KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL 247 (391)
T KOG2110|consen 194 -------------------------KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIFKL 247 (391)
T ss_pred -------------------------CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEEEe
Confidence 23 47899999999999997543 35789999999999998888665 999998
Q ss_pred CCCccc-CC---CCCCcc-cc--------CCcceEEEEEecc------cccccEEEEEEc--cCCCEEEEEeCCCcEEEE
Q 004255 400 MPSCMR-SG---SGNHKY-DW--------NSSHVHLYKLHRG------ITSATIQDICFS--HYSQWIAIVSSKGTCHVF 458 (765)
Q Consensus 400 ~~~~~~-~~---sG~~~~-~~--------~~s~~~l~~l~rG------~~~a~I~slaFS--pDg~~Las~S~dgTVhIw 458 (765)
...... .. .+.... .+ ...........|. .....=..++|+ ++..++.+++.||++..|
T Consensus 248 ~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y 327 (391)
T KOG2110|consen 248 EKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSY 327 (391)
T ss_pred cccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEE
Confidence 653210 00 000000 00 0000001111111 001101234455 577899999999999999
Q ss_pred eCCCC-CCC
Q 004255 459 VLSPF-GGD 466 (765)
Q Consensus 459 dl~~~-gg~ 466 (765)
.+++. ||+
T Consensus 328 ~l~~~~gGe 336 (391)
T KOG2110|consen 328 RLPPKEGGE 336 (391)
T ss_pred EcCCCCCce
Confidence 99985 444
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=2.9e-09 Score=126.87 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=78.6
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCC--CeEEEEECCCC-CEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCc
Q 004255 344 DMDNAGIVVVKDFVTRAIISQFKAHTS--PISALCFDPSG-TLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSS 418 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~--~IsaLaFSpdG-~lLATaS~dGt--~IrVWdi~~~~~~~~sG~~~~~~~~s 418 (765)
++..+|.+.|||++..+.+..|.-|.. .++.|+|+|++ +.|++|+.|++ +|.+||++.. .
T Consensus 179 S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a--------------s- 243 (1049)
T KOG0307|consen 179 SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA--------------S- 243 (1049)
T ss_pred ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc--------------C-
Confidence 445678999999999988888876644 47899999974 57888888765 7999998642 0
Q ss_pred ceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCC
Q 004255 419 HVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 419 ~~~l~~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~ 462 (765)
..+.++ +||.. -|.+++|++.+ ++|++++.|+.|.+|+.++
T Consensus 244 -sP~k~~-~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 244 -SPLKIL-EGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred -Cchhhh-ccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 233444 34443 48999999876 9999999999999999987
No 170
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.91 E-value=4.2e-08 Score=107.17 Aligned_cols=129 Identities=19% Similarity=0.289 Sum_probs=100.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
.++|+|-|+...|+++ .++||++|+.+ .+++||++ .+++..++..|.+.|..++|-|. .
T Consensus 239 ~~gHTdavl~Ls~n~~------~~nVLaSgsaD~TV~lWD~~-~g~p~~s~~~~~k~Vq~l~wh~~----------~--- 298 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRN------FRNVLASGSADKTVKLWDVD-TGKPKSSITHHGKKVQTLEWHPY----------E--- 298 (463)
T ss_pred cccchHHHHHHHhccc------cceeEEecCCCceEEEEEcC-CCCcceehhhcCCceeEEEecCC----------C---
Confidence 4568888888888875 47899999987 59999994 79999999999999999999873 2
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC-CeEEEEEeCCCCEEEEEecC---CeEE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS-HCYEHVLRFRSSVCMVRCSP---RIVA 206 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlkt-g~~v~tL~~~s~V~sV~~s~---~~La 206 (765)
|.+++ +|. .+++|.+.|.+. ++.-..++|.+.|-.|+.++ ..+.
T Consensus 299 p~~LL-sGs-------------------------------~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 299 PSVLL-SGS-------------------------------YDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFF 346 (463)
T ss_pred ceEEE-ecc-------------------------------ccceEEeeeccCccccCceEEeccceEEEEecCCCceeEE
Confidence 33333 221 257999999984 44556778999999999876 4555
Q ss_pred EEe-CCeEEEEECCCC-ceeEEEEecCC
Q 004255 207 VGL-ATQIYCFDALTL-ENKFSVLTYPV 232 (765)
Q Consensus 207 V~~-~~~I~iwD~~t~-~~l~tl~t~p~ 232 (765)
++. ++.+|-||++.. ++++++..|..
T Consensus 347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~ 374 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPGKPVWTLKAHDD 374 (463)
T ss_pred EecCCceEEeeecCCCCCceeEEEeccC
Confidence 555 568999999876 78899888765
No 171
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=1.3e-09 Score=123.42 Aligned_cols=315 Identities=24% Similarity=0.314 Sum_probs=185.7
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (765)
Q Consensus 74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~ 152 (765)
.+.++++||-.| .++|-..-.+.+.+.+.++.|+|..+.++++- ++.+
T Consensus 251 kGy~~isglc~g~~~~g~gpglgg~~~~~vGrvg~vsaesV~g~~--------------~viv----------------- 299 (788)
T KOG2109|consen 251 KGYVLISGLCRGSYQIGTGPGLGGFEEVLVGRVGPVSAESVLGNN--------------LVIV----------------- 299 (788)
T ss_pred chHHHHHHHhhcccCCCCCCCCCCcCceeccccccccceeecccc--------------eEEe-----------------
Confidence 467888999888 89999877788889999999999999988631 3222
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEeCCeEEEEECCCCceeEEEEe-cC
Q 004255 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT-YP 231 (765)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~~~~I~iwD~~t~~~l~tl~t-~p 231 (765)
..|=+++....++..+++..+++++-++.+|++++-..+.|++.+.++..-++.. .+
T Consensus 300 ----------------------kdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~q 357 (788)
T KOG2109|consen 300 ----------------------KDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQ 357 (788)
T ss_pred ----------------------ecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEecccccccccccc
Confidence 1123444556666667777777777777888888776666666666665444432 22
Q ss_pred CcccCCCCccccccccceeEEccceEEEecCC---ceecCCccc--cCCCCCCCC-C----CCC---cCCCCCcceeeeh
Q 004255 232 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNT---LLLSNSGRL--SPQNLTPSG-V----SPS---TSPGGSSLVARYA 298 (765)
Q Consensus 232 ~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~---~~~~~~G~~--s~~~lt~~~-~----s~s---~sp~~gslva~~a 298 (765)
.+. ..+.++.++||++..-. .+.. .|-+ ..-.+++.. + ..+ +..+.+-+++
T Consensus 358 s~~------------~s~ra~t~aviqdicfs~~s~~r~-~gsc~Ge~P~ls~t~~lp~~A~~Sl~~gl~s~g~~aa--- 421 (788)
T KOG2109|consen 358 SLV------------VSPRANTAAVIQDICFSEVSTIRT-AGSCEGEPPALSLTCQLPAYADTSLDLGLQSSGGLAA--- 421 (788)
T ss_pred ccc------------cchhcchHHHHHHHhhhhhcceEe-ecccCCCCcccccccccchhhchhhhccccccCcccc---
Confidence 210 12345555444432111 0000 0000 000000000 0 000 0011111111
Q ss_pred hhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccc-cc-cccCCCCeEEEEEC-----CCC-cEEEEeccCCC
Q 004255 299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRH-AG-ADMDNAGIVVVKDF-----VTR-AIISQFKAHTS 370 (765)
Q Consensus 299 ~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~-~~-~~~~~dG~V~IwDl-----~s~-~~i~~~~aH~~ 370 (765)
.|+.-+-.+|++..+..++....+.-++.+..+. .+ ..-...|.+.+.+. ..+ .+++.+-+|..
T Consensus 422 --------~gla~~sag~~a~s~~asSv~s~s~~pd~ks~gv~~gsv~k~~q~~~~~l~~llv~~psGd~vvqh~vahs~ 493 (788)
T KOG2109|consen 422 --------EGLATSSAGYTAHSYTASSVFSRSVKPDSKSVGVGSGSVTKANQGVITVLNLLLVGEPSGDGVVQHYVAHSD 493 (788)
T ss_pred --------eeeeeccccccccccccceeeccccccchhhccceeeeccccCccchhhhhheeeecCCCCceeEEEeeccC
Confidence 1111111233333221111111111112221111 00 01111233333322 123 46677889999
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S 450 (765)
++..+.|+++++++.|++..++.+.+|-++|+...+. -....++|++.||.+.+.|..++|+-|++|+|...
T Consensus 494 ~gv~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~wss--------laav~hly~l~rG~TsaKv~~~afs~dsrw~A~~t 565 (788)
T KOG2109|consen 494 PGVYIEFSPDQRLVLSADANENEFNIFLVMPHATWSS--------LAAVQHLYKLNRGSTSAKVVSTAFSEDSRWLAITT 565 (788)
T ss_pred ccceeeecccccceecccccccccceEEeecccccHH--------HhhhhhhhhccCCCccceeeeeEeecchhhhhhhh
Confidence 9999999999999999999888879999988643211 12346899999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCccccccc
Q 004255 451 SKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 451 ~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
..+|-|||.+.+|++....++|.
T Consensus 566 ~~~TthVfk~hpYgg~aeqrth~ 588 (788)
T KOG2109|consen 566 NHATTHVFKVHPYGGKAEQRTHG 588 (788)
T ss_pred cCCceeeeeeccccccccceecC
Confidence 99999999999999999999986
No 172
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.90 E-value=3.5e-08 Score=108.65 Aligned_cols=207 Identities=14% Similarity=0.274 Sum_probs=140.7
Q ss_pred CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
...++.|..+| ++|||+. ..-+++-+..|...|.+|.+.-+ + -.||.|.-+
T Consensus 91 S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~-----------D--eyiAsvs~g-------------- 142 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNT-----------D--EYIASVSDG-------------- 142 (673)
T ss_pred ceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCC-----------c--ceeEEeccC--------------
Confidence 45666777666 8999996 56688888899999999987632 2 267765421
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC--CEEEEEecC--C-eEEE-EeCCeEEEEECCCCceeEEE
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP--R-IVAV-GLATQIYCFDALTLENKFSV 227 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s--~V~sV~~s~--~-~LaV-~~~~~I~iwD~~t~~~l~tl 227 (765)
+-|.|-+++++..-.+|..++ .|.-+++++ + +|.+ +.++.|++||+..+...+..
T Consensus 143 -------------------Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~ 203 (673)
T KOG4378|consen 143 -------------------GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA 203 (673)
T ss_pred -------------------CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence 358899999998888888763 667888876 4 4444 44567999999877655544
Q ss_pred E-ecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhh
Q 004255 228 L-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (765)
Q Consensus 228 ~-t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la 306 (765)
. .|..|. .-+.|+| ++--+
T Consensus 204 ~~~HsAP~-------------~gicfsp----------------------------------sne~l------------- 223 (673)
T KOG4378|consen 204 SEAHSAPC-------------RGICFSP----------------------------------SNEAL------------- 223 (673)
T ss_pred hhhccCCc-------------CcceecC----------------------------------Cccce-------------
Confidence 3 243331 0012221 11111
Q ss_pred cccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 004255 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT 386 (765)
Q Consensus 307 ~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLAT 386 (765)
+++.+.|..|.+||..+.+....|.. ..|.++++|+++|.+|+.
T Consensus 224 -----------------------------------~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~a 267 (673)
T KOG4378|consen 224 -----------------------------------LVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCA 267 (673)
T ss_pred -----------------------------------EEEecccceEEEeecccccccceeee-cCCcceeeecCCceEEEe
Confidence 12335688999999998776666543 469999999999999999
Q ss_pred EEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 004255 387 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (765)
Q Consensus 387 aS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg 443 (765)
|+..|. |.-||++.. ..++..+. .+.+.|++|+|-|--
T Consensus 268 G~s~G~-~i~YD~R~~----------------k~Pv~v~s--ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 268 GNSKGE-LIAYDMRST----------------KAPVAVRS--AHDASVTRVAFQPSP 305 (673)
T ss_pred ecCCce-EEEEecccC----------------CCCceEee--ecccceeEEEeeecc
Confidence 999887 778999531 12444433 234569999998754
No 173
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=5.5e-09 Score=109.80 Aligned_cols=129 Identities=21% Similarity=0.278 Sum_probs=86.5
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC----
Q 004255 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS---- 417 (765)
Q Consensus 342 ~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~---- 417 (765)
++.|..+|.|.|||+.+..+-..|.+|..||.+|+||+||++|+|+|. +..|.+||+........-.-.+..|..
T Consensus 38 lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~-D~si~lwDl~~gs~l~rirf~spv~~~q~hp 116 (405)
T KOG1273|consen 38 LAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR-DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHP 116 (405)
T ss_pred eeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC-CceeEEEeccCCCceeEEEccCccceeeecc
Confidence 456889999999999999988999999999999999999999999999 567999999652100000000000100
Q ss_pred cc--eE----------EEEEecccc-----------cccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccc
Q 004255 418 SH--VH----------LYKLHRGIT-----------SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471 (765)
Q Consensus 418 s~--~~----------l~~l~rG~~-----------~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~ 471 (765)
.. .. +..+.-+.+ +..-.+..|.+-|++|.+|+.+|.++|++..+..+...++.
T Consensus 117 ~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri 193 (405)
T KOG1273|consen 117 RKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI 193 (405)
T ss_pred ccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeee
Confidence 00 00 111110000 00112334888899999999999999999998877655543
No 174
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.88 E-value=2.3e-06 Score=90.65 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=77.0
Q ss_pred ccCCCCe-EEEEECCCCcEEEEecc--CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCC--CCCCccc-c--
Q 004255 344 DMDNAGI-VVVKDFVTRAIISQFKA--HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG--SGNHKYD-W-- 415 (765)
Q Consensus 344 ~~~~dG~-V~IwDl~s~~~i~~~~a--H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~--sG~~~~~-~-- 415 (765)
+++..|+ |||||..+|+.+..|+. -...|.+|+|||++.+||.+|++|+ ++||.++....... +..+... +
T Consensus 198 TaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~~~~~~lp 276 (346)
T KOG2111|consen 198 TASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLSFKRLVLP 276 (346)
T ss_pred EeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCccccccccccccccc
Confidence 3445565 89999999999999974 2357999999999999999999886 99999976321000 0000000 0
Q ss_pred --CCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 416 --NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 416 --~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
-.+.+-..+++- ......-++|-.+.+-++....||+-+=+.+.+..+
T Consensus 277 ky~~S~wS~~~f~l--~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~~~ 326 (346)
T KOG2111|consen 277 KYFSSEWSFAKFQL--PQGTQCIIAFGSETNTVIAICADGSYYKFKFDPKNG 326 (346)
T ss_pred hhcccceeEEEEEc--cCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccccc
Confidence 001122222221 122345688998877777888899988777766533
No 175
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.87 E-value=1.2e-07 Score=99.15 Aligned_cols=176 Identities=18% Similarity=0.301 Sum_probs=113.8
Q ss_pred CCEEEEEECCCCeE--EEE--EeCCCCEEEEEecC---CeEE-EEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccc
Q 004255 172 PTAVRFYSFQSHCY--EHV--LRFRSSVCMVRCSP---RIVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 243 (765)
Q Consensus 172 p~tV~lWdlktg~~--v~t--L~~~s~V~sV~~s~---~~La-V~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~ 243 (765)
++|..|||+.+|.. |++ +-+..+|++|+|.+ +++| ||.++.|++||++.++.-..+...|.|..
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~-------- 243 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPST-------- 243 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCC--------
Confidence 58999999999732 332 34667999999987 5555 56778899999998875444444444200
Q ss_pred ccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCC
Q 004255 244 NVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 323 (765)
Q Consensus 244 ~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~ 323 (765)
-.+- |+....++ +|..
T Consensus 244 ----pLlR-----LswnkqDp--------------------------------------------------nymA----- 259 (364)
T KOG0290|consen 244 ----PLLR-----LSWNKQDP--------------------------------------------------NYMA----- 259 (364)
T ss_pred ----ccee-----eccCcCCc--------------------------------------------------hHHh-----
Confidence 0011 11111110 0000
Q ss_pred CCCCCccCCCccccccccccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCC
Q 004255 324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMP 401 (765)
Q Consensus 324 ~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~-~~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~ 401 (765)
..+.....|.|.|++.. ..+..|++|.+.|++++|.| +...|+||++ +..+-+||+..
T Consensus 260 -------------------Tf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD-D~qaliWDl~q 319 (364)
T KOG0290|consen 260 -------------------TFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD-DCQALIWDLQQ 319 (364)
T ss_pred -------------------hhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC-cceEEEEeccc
Confidence 01223457889999875 57889999999999999999 5778999998 67799999965
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc-cCCCEEEEEeCCC
Q 004255 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS-HYSQWIAIVSSKG 453 (765)
Q Consensus 402 ~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS-pDg~~Las~S~dg 453 (765)
.+..+ + ......|.. .+.|..|.|+ -.+.||+++..+.
T Consensus 320 ~~~~~--~-------~dPilay~a-----~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 320 MPREN--G-------EDPILAYTA-----GGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred ccccC--C-------CCchhhhhc-----cceeeeeeecccCCCEEEEEecCe
Confidence 32101 1 011223332 2469999999 4678999987653
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.86 E-value=3.2e-08 Score=106.67 Aligned_cols=107 Identities=12% Similarity=0.131 Sum_probs=80.9
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
+++.|.+|.|||+.+++.+.++. |..-|.+++|+.||.+|+|++. |+.|||||.+. | ..+.
T Consensus 149 sag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck-DKkvRv~dpr~-------~----------~~v~ 209 (472)
T KOG0303|consen 149 SAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK-DKKVRVIDPRR-------G----------TVVS 209 (472)
T ss_pred hccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc-cceeEEEcCCC-------C----------cEee
Confidence 45678899999999999988888 9999999999999999999999 56699999865 3 3444
Q ss_pred EEecccccccEEEEEEccCCCEEEEEe---CCCcEEEEeCCCCCCCcccc
Q 004255 424 KLHRGITSATIQDICFSHYSQWIAIVS---SKGTCHVFVLSPFGGDSGFQ 470 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~Las~S---~dgTVhIwdl~~~gg~~~~~ 470 (765)
+. .++..+.-.-+-|=.+|..+.+|- ++..+-|||-.....+..++
T Consensus 210 e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~ 258 (472)
T KOG0303|consen 210 EG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ 258 (472)
T ss_pred ec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeE
Confidence 43 344444445567888998544442 35678999987666554443
No 177
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.84 E-value=3.7e-08 Score=110.85 Aligned_cols=102 Identities=13% Similarity=0.241 Sum_probs=76.6
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
.+..|-+|+|||+.+++....|.+|++.|..++|||||+++||.+.||+ ||||+-+.. .+.+|
T Consensus 695 ~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~----------------e~pv~ 757 (1012)
T KOG1445|consen 695 VASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSR----------------EQPVY 757 (1012)
T ss_pred hhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCC----------------CCccc
Confidence 4567889999999999999999999999999999999999999999876 999986431 13444
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCC----cEEEEeCCCC
Q 004255 424 KLHRGITSATIQDICFSHYSQWIAIVSSKG----TCHVFVLSPF 463 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dg----TVhIwdl~~~ 463 (765)
+-. |.....=--|.|--||++|++.+.|. .|.+|+....
T Consensus 758 Eg~-gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 758 EGK-GPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred cCC-CCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 421 11111112366888999999988775 3666666544
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.84 E-value=2.4e-07 Score=107.32 Aligned_cols=276 Identities=15% Similarity=0.159 Sum_probs=156.2
Q ss_pred cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCC
Q 004255 85 GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQ 164 (765)
Q Consensus 85 G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~ 164 (765)
.+-||++.+..+. +..-....+|.++++.| |..+ +|| .++
T Consensus 223 ~~~vW~~~~p~~P-e~~~~~~s~v~~~~f~p----------~~p~--ll~-gG~-------------------------- 262 (555)
T KOG1587|consen 223 VLLVWSLKNPNTP-ELVLESPSEVTCLKFCP----------FDPN--LLA-GGC-------------------------- 262 (555)
T ss_pred eEEEEecCCCCCc-eEEEecCCceeEEEecc----------CCcc--eEE-eec--------------------------
Confidence 5899999876444 44444456899999987 4333 443 221
Q ss_pred CCCCCCCCCEEEEEECCCCeE--EEEEe-----CCCCEEEEEecC-----CeEEEEeCCeEEEEECCCCceeE-EEEecC
Q 004255 165 SGNCVNSPTAVRFYSFQSHCY--EHVLR-----FRSSVCMVRCSP-----RIVAVGLATQIYCFDALTLENKF-SVLTYP 231 (765)
Q Consensus 165 ~~~~~~~p~tV~lWdlktg~~--v~tL~-----~~s~V~sV~~s~-----~~LaV~~~~~I~iwD~~t~~~l~-tl~t~p 231 (765)
..+.|.+||++.+.. ...+. ++.+|.+|.... +++.++.|++|..|++..+.+.. .+...+
T Consensus 263 ------y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~ 336 (555)
T KOG1587|consen 263 ------YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLES 336 (555)
T ss_pred ------cCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccc
Confidence 126899999998876 44443 456787777543 47778889999999877654321 111111
Q ss_pred CcccCCCCccccccccceeEEcc----ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhc
Q 004255 232 VPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (765)
Q Consensus 232 ~p~~~~~~~~~~~~~~~~~Alsp----r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~ 307 (765)
......+ . ...++...++|-+ +++.- ++.+.+.+ ...+.+++... .+
T Consensus 337 ~~~~~~~-~-~~~~~~t~~~F~~~~p~~FiVG-Te~G~v~~---~~r~g~~~~~~---------------------~~-- 387 (555)
T KOG1587|consen 337 KKHKGQQ-S-SKAVGATSLKFEPTDPNHFIVG-TEEGKVYK---GCRKGYTPAPE---------------------VS-- 387 (555)
T ss_pred ccccccc-c-ccccceeeEeeccCCCceEEEE-cCCcEEEE---EeccCCccccc---------------------cc--
Confidence 1100000 0 0011233455544 33332 22222111 01111111000 00
Q ss_pred ccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC-CCcEEEEeccCCCCeEEEEECCCC-CEEE
Q 004255 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSG-TLLV 385 (765)
Q Consensus 308 G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~-s~~~i~~~~aH~~~IsaLaFSpdG-~lLA 385 (765)
+..+..-...++....+.+||-+..+- .+ ..|-+|+||.-. ...++..+..+...|.+++|||.- ..+|
T Consensus 388 -----~~~~~~~~~h~g~v~~v~~nPF~~k~f---ls-~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 388 -----YKGHSTFITHIGPVYAVSRNPFYPKNF---LS-VGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred -----ccccccccccCcceEeeecCCCcccee---ee-eccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE
Confidence 000000011112222233333222111 12 238999999988 677888888999999999999964 5678
Q ss_pred EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 386 TaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
++..+|+ |.|||+..... ..+.....+ ......+.|+++|+.|++|...|++|+|++..
T Consensus 459 ~~d~~G~-l~iWDLl~~~~---------------~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 459 TVDGDGN-LDIWDLLQDDE---------------EPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEcCCCc-eehhhhhcccc---------------CCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 8887775 99999964211 122222222 23467788999999999999999999999964
No 179
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.79 E-value=2.7e-08 Score=107.63 Aligned_cols=133 Identities=15% Similarity=0.161 Sum_probs=95.0
Q ss_pred ccccCCCCeEEEEECCCC---------cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc
Q 004255 342 GADMDNAGIVVVKDFVTR---------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK 412 (765)
Q Consensus 342 ~~~~~~dG~V~IwDl~s~---------~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~ 412 (765)
+++++.|..|+||-+... +.+..|..|+..|+++.|+|+|.+||||+++| .|.+|-........ ....
T Consensus 29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g-~v~lWk~~~~~~~~--~d~e 105 (434)
T KOG1009|consen 29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG-EVFLWKQGDVRIFD--ADTE 105 (434)
T ss_pred eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc-eEEEEEecCcCCcc--ccch
Confidence 356778899999987542 23456788999999999999999999999955 69999764210000 0001
Q ss_pred cccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccCCCCC
Q 004255 413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478 (765)
Q Consensus 413 ~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~~~~~ 478 (765)
.+.....+.+.+..|| +...|++++|+||++++++++.|.++++||+....-...+..|..-+-+
T Consensus 106 ~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 106 ADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred hhhCccceEEEEEecc-cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence 1111222455555566 4567999999999999999999999999999976555566677654444
No 180
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=3.2e-06 Score=96.16 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=46.8
Q ss_pred eEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 004255 372 ISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (765)
Q Consensus 372 IsaLaFSpdG~lLATaS~dGt--~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~ 449 (765)
....+|||||++||.++.++. .|.+||+.. + ....+..+ ....+.+|+|||++|+.+
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-------g-----------~~~~lt~~---~~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-------G-----------QVTALTDT---TRDESPSFAPNGRYILYA 388 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCC-------C-----------CeEEccCC---CCccCceECCCCCEEEEE
Confidence 345789999999998776543 588999854 2 12223222 124578999999999888
Q ss_pred eCCC-cEEEEeCCCCC
Q 004255 450 SSKG-TCHVFVLSPFG 464 (765)
Q Consensus 450 S~dg-TVhIwdl~~~g 464 (765)
+.++ .-.||-+...|
T Consensus 389 ~~~~g~~~l~~~~~~g 404 (427)
T PRK02889 389 TQQGGRSVLAAVSSDG 404 (427)
T ss_pred EecCCCEEEEEEECCC
Confidence 8654 33455444433
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=1.4e-07 Score=100.42 Aligned_cols=105 Identities=13% Similarity=0.245 Sum_probs=75.0
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (765)
Q Consensus 74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~ 152 (765)
+.+.+++|+.+| +++||.. +++..+.++.+.+.+..++|+-. ++-..|.+ ++
T Consensus 39 ~e~~vav~lSngsv~lyd~~-tg~~l~~fk~~~~~~N~vrf~~~-----------ds~h~v~s-~s-------------- 91 (376)
T KOG1188|consen 39 FETAVAVSLSNGSVRLYDKG-TGQLLEEFKGPPATTNGVRFISC-----------DSPHGVIS-CS-------------- 91 (376)
T ss_pred cceeEEEEecCCeEEEEecc-chhhhheecCCCCcccceEEecC-----------CCCCeeEE-ec--------------
Confidence 446788898887 9999996 58888999999888888887731 12123333 22
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC----CEEEEE--ecCCeEEEEeCC-----eEEEEECCCC
Q 004255 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS----SVCMVR--CSPRIVAVGLAT-----QIYCFDALTL 221 (765)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s----~V~sV~--~s~~~LaV~~~~-----~I~iwD~~t~ 221 (765)
++++||+||+++...+..+.+.. +-.+++ |+.++++.|... .|++||++.-
T Consensus 92 ------------------sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~ 153 (376)
T KOG1188|consen 92 ------------------SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE 153 (376)
T ss_pred ------------------cCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccc
Confidence 24799999999998888887632 334444 466888887643 4999999865
Q ss_pred ce
Q 004255 222 EN 223 (765)
Q Consensus 222 ~~ 223 (765)
+.
T Consensus 154 qq 155 (376)
T KOG1188|consen 154 QQ 155 (376)
T ss_pred cc
Confidence 43
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=6e-07 Score=106.40 Aligned_cols=103 Identities=19% Similarity=0.221 Sum_probs=76.8
Q ss_pred ccCCCCeEEEEECCCC---cEEEEeccCCCC--eEEEEECCCCCE-EEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 004255 344 DMDNAGIVVVKDFVTR---AIISQFKAHTSP--ISALCFDPSGTL-LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~---~~i~~~~aH~~~--IsaLaFSpdG~l-LATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~ 417 (765)
.|-.||.|++||.+.. ..+...+.|... |..+.|.+.|-- |++||.+|. |++||++... .. .
T Consensus 1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~-----~e------~ 1293 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSS-----KE------T 1293 (1387)
T ss_pred EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCc-----cc------c
Confidence 3457999999998764 357778899887 999999998876 999999875 9999996421 00 0
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 418 s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
.....+....| ...+++..+++...||+|+. +.|.||++.-
T Consensus 1294 ~~~iv~~~~yG---s~lTal~VH~hapiiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1294 FLTIVAHWEYG---SALTALTVHEHAPIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred cceeeeccccC---ccceeeeeccCCCeeeecCc-ceEEEEecCh
Confidence 00112222223 23788999999999999999 9999999863
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.74 E-value=6.8e-07 Score=93.43 Aligned_cols=103 Identities=19% Similarity=0.231 Sum_probs=81.5
Q ss_pred CCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 346 DNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
..+++++.||+++.+....|+ +|-..|..|.|+|+-+ +||||++||. ||+||++.. . ..+.
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~t------k----------~pv~ 252 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKT------K----------FPVQ 252 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCC------C----------cccc
Confidence 468899999999988777775 8999999999999855 5889998776 999998641 1 3566
Q ss_pred EEecccccccEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCc
Q 004255 424 KLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFGGDS 467 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpD-g~~Las~S~dgTVhIwdl~~~gg~~ 467 (765)
++. + |..+|+++.|+|- .+.|.+++.|..|.+|.......++
T Consensus 253 el~-~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 253 ELP-G-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred ccC-C-CceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence 664 3 4468999999985 4788999999999999877655443
No 184
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=3.3e-06 Score=96.07 Aligned_cols=93 Identities=12% Similarity=0.132 Sum_probs=55.3
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (765)
Q Consensus 351 V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG--t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG 428 (765)
|.++|+.+++.. .+..+.......+|||||++|+..+.++ ..|.+||+.. | ....+..+
T Consensus 318 iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-------g-----------~~~~Lt~~ 378 (433)
T PRK04922 318 IYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-------G-----------SVRTLTPG 378 (433)
T ss_pred EEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-------C-----------CeEECCCC
Confidence 555666655432 2222223345689999999998876543 2588999854 2 12233322
Q ss_pred cccccEEEEEEccCCCEEEEEeCC-CcEEEEeCCCCCC
Q 004255 429 ITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGG 465 (765)
Q Consensus 429 ~~~a~I~slaFSpDg~~Las~S~d-gTVhIwdl~~~gg 465 (765)
. ...+.+|||||++|+..+.+ +.-+||-++..++
T Consensus 379 ~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 379 S---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred C---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 1 23467999999998887764 3444554444343
No 185
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.72 E-value=6e-07 Score=97.08 Aligned_cols=129 Identities=11% Similarity=0.045 Sum_probs=94.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcce------EeeeeccCCEEEEEEecCCCCCCCCC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFN------ELVSKRDGPVSFLQMQPFPVKDDGCE 124 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~------ells~~dg~V~~v~~lP~p~~~~~~d 124 (765)
.-+|+..|+-+.|+.. + .++|++|+.+. ++||++-+.+..+ ..|.+|...|..|++-|.
T Consensus 77 v~GHt~~vLDi~w~Pf--n----D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPt-------- 142 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPF--N----DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPT-------- 142 (472)
T ss_pred ccCccccccccccCcc--C----CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeeccc--------
Confidence 4567888775555331 2 36899999885 9999996554332 345678888999999874
Q ss_pred CccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--
Q 004255 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-- 202 (765)
Q Consensus 125 ~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~-- 202 (765)
.++.|+..+ .+++|.+||+.||+.+-+|+++.-|+++.||.
T Consensus 143 ----A~NVLlsag---------------------------------~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 143 ----APNVLLSAG---------------------------------SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDG 185 (472)
T ss_pred ----chhhHhhcc---------------------------------CCceEEEEeccCCceeeecCCCCeEEEEEeccCC
Confidence 233555422 24699999999999999999999999999987
Q ss_pred CeEEEEe-CCeEEEEECCCCceeEEEEecC
Q 004255 203 RIVAVGL-ATQIYCFDALTLENKFSVLTYP 231 (765)
Q Consensus 203 ~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p 231 (765)
.+|++.. |.+|+|||.++++.+..-..|.
T Consensus 186 s~l~TtckDKkvRv~dpr~~~~v~e~~~he 215 (472)
T KOG0303|consen 186 SLLCTTCKDKKVRVIDPRRGTVVSEGVAHE 215 (472)
T ss_pred ceeeeecccceeEEEcCCCCcEeeeccccc
Confidence 5666654 5679999999998776654443
No 186
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.70 E-value=6.2e-07 Score=93.82 Aligned_cols=104 Identities=14% Similarity=0.218 Sum_probs=82.2
Q ss_pred ccCCCCeEEEEECCCCcEEEEec---cCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 004255 344 DMDNAGIVVVKDFVTRAIISQFK---AHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~~~---aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~ 419 (765)
+.+.||.||+||++..+--..+- ....|+..|++++ |-++|||-..|...|.|-|++-. +
T Consensus 214 SvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P------~---------- 277 (364)
T KOG0290|consen 214 SVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP------C---------- 277 (364)
T ss_pred EecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC------C----------
Confidence 44679999999999876444432 3256899999997 56789999888888999999652 2
Q ss_pred eEEEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCC
Q 004255 420 VHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~gg 465 (765)
..+.+|++ |.+.|..|+|.|.+ ..|+++++|..+-|||+.....
T Consensus 278 tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 278 TPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred cceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 36677753 45789999999986 6899999999999999987654
No 187
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.69 E-value=3.6e-08 Score=112.29 Aligned_cols=99 Identities=13% Similarity=0.292 Sum_probs=79.0
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG 428 (765)
-.|+||+..+-..+..|.+|.-.|+.|+|||||++|+++|. |.++.||..+... .. ..-+....
T Consensus 552 AvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR-DRt~sl~~~~~~~----~~----------e~~fa~~k- 615 (764)
T KOG1063|consen 552 AVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR-DRTVSLYEVQEDI----KD----------EFRFACLK- 615 (764)
T ss_pred eEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec-CceEEeeeeeccc----ch----------hhhhcccc-
Confidence 47999999988888899999999999999999999999999 5569999885410 00 00111111
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 429 ~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
.|...|++++|+||+.++|++|.|++|.||.+...
T Consensus 616 ~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 616 AHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 23346999999999999999999999999998764
No 188
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.69 E-value=2.5e-08 Score=112.19 Aligned_cols=100 Identities=23% Similarity=0.307 Sum_probs=80.1
Q ss_pred cccCCCCeEEEEECCCC-------cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccc
Q 004255 343 ADMDNAGIVVVKDFVTR-------AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 414 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~-------~~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~ 414 (765)
+.+..||.|+||-+..+ +....|.+|...|.+|.|+| -...||++|. +.+|++||+.. +
T Consensus 644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy-d~Ti~lWDl~~-------~----- 710 (1012)
T KOG1445|consen 644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY-DSTIELWDLAN-------A----- 710 (1012)
T ss_pred eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc-cceeeeeehhh-------h-----
Confidence 45678999999998653 45667889999999999999 4668999999 55699999965 2
Q ss_pred cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 415 ~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
....+| .|++ ..|.+++|||||+.+|+.+.||+++||.-..
T Consensus 711 -----~~~~~l-~gHt-dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 711 -----KLYSRL-VGHT-DQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred -----hhhhee-ccCc-CceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 122234 3544 5699999999999999999999999997543
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=2.7e-06 Score=99.76 Aligned_cols=107 Identities=20% Similarity=0.265 Sum_probs=80.9
Q ss_pred ccccCCCCeEEEEE-CC-CC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 004255 342 GADMDNAGIVVVKD-FV-TR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (765)
Q Consensus 342 ~~~~~~dG~V~IwD-l~-s~--~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~ 417 (765)
.+.++.||.|.||. +. ++ ...+.|.=|..+|.+|+|++||.+|.||+..| .+-+|.+.+. +
T Consensus 220 ~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~-VLv~Wq~~T~------~-------- 284 (792)
T KOG1963|consen 220 LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG-VLVLWQLETG------K-------- 284 (792)
T ss_pred EEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccce-EEEEEeecCC------C--------
Confidence 45677889999995 33 12 23456777889999999999999999999965 6889998652 1
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccc
Q 004255 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 469 (765)
Q Consensus 418 s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~ 469 (765)
.+-|-+| .+.|..+.+|||+.+.+....|+.||+-..........+
T Consensus 285 -kqfLPRL-----gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tI 330 (792)
T KOG1963|consen 285 -KQFLPRL-----GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTI 330 (792)
T ss_pred -ccccccc-----CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhc
Confidence 0222222 367999999999999999999999999887655444333
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.69 E-value=2.4e-06 Score=93.23 Aligned_cols=104 Identities=17% Similarity=0.207 Sum_probs=67.3
Q ss_pred CCeEEEEECCCC----cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 348 AGIVVVKDFVTR----AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 348 dG~V~IwDl~s~----~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
++.|.+||+.+. +.+..+.++ .....++|+|+|++|++++..+..|.|||+.+. |. .........
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~------g~----l~~~~~~~~ 169 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD------GH----LVAQEPAEV 169 (330)
T ss_pred CCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC------Cc----ccccCCCce
Confidence 567788887632 223333332 345678999999999888877678999999542 20 000000111
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCCC
Q 004255 424 KLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGG 465 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~Las~S~-dgTVhIwdl~~~gg 465 (765)
....|. ....++|+|||++|+++.. +++|.+|+++...+
T Consensus 170 ~~~~g~---~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~ 209 (330)
T PRK11028 170 TTVEGA---GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG 209 (330)
T ss_pred ecCCCC---CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC
Confidence 222232 2567999999999988876 99999999986433
No 191
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.68 E-value=4.3e-07 Score=102.95 Aligned_cols=93 Identities=9% Similarity=0.087 Sum_probs=58.0
Q ss_pred ccCCCCeEE---EEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-cccEEEEEEcc
Q 004255 366 KAHTSPISA---LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-SATIQDICFSH 441 (765)
Q Consensus 366 ~aH~~~Isa---LaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~-~a~I~slaFSp 441 (765)
++|...|.. +-|..|...||||+.-|..|+||||+..+..-..+ ......+....+ .-.+.++....
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~e---------p~~~~~~~t~skrs~G~~nL~lDs 281 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQE---------PRGSDKYPTHSKRSVGQVNLILDS 281 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccC---------CCcccCccCcccceeeeEEEEecC
Confidence 355555555 55668889999999955569999997642110000 001111100000 11366777777
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCc
Q 004255 442 YSQWIAIVSSKGTCHVFVLSPFGGDS 467 (765)
Q Consensus 442 Dg~~Las~S~dgTVhIwdl~~~gg~~ 467 (765)
-|.+|.+.+.|++|..|++...+..+
T Consensus 282 sGt~L~AsCtD~sIy~ynm~s~s~sP 307 (720)
T KOG0321|consen 282 SGTYLFASCTDNSIYFYNMRSLSISP 307 (720)
T ss_pred CCCeEEEEecCCcEEEEeccccCcCc
Confidence 78999888889999999998776543
No 192
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.67 E-value=9.7e-07 Score=89.85 Aligned_cols=127 Identities=20% Similarity=0.290 Sum_probs=87.9
Q ss_pred CEEEEEECC-CCeEEEEEeC--CCCEEEEEecC--CeEEEEe---CCeEEEEECCCCceeEEEEecCCcccCCCCccccc
Q 004255 173 TAVRFYSFQ-SHCYEHVLRF--RSSVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 244 (765)
Q Consensus 173 ~tV~lWdlk-tg~~v~tL~~--~s~V~sV~~s~--~~LaV~~---~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~ 244 (765)
+...||.++ .+..+..+.. .++|.+++++| +.+|+.. ..+|.+||+. ++.++++...+
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~------------- 102 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQP------------- 102 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCC-------------
Confidence 345555552 2345666654 45799999998 4555442 3479999996 55556554321
Q ss_pred cccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCC
Q 004255 245 VGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 322 (765)
Q Consensus 245 ~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p 322 (765)
.+.+.++| ++||.++-.
T Consensus 103 --~n~i~wsP~G~~l~~~g~~----------------------------------------------------------- 121 (194)
T PF08662_consen 103 --RNTISWSPDGRFLVLAGFG----------------------------------------------------------- 121 (194)
T ss_pred --ceEEEECCCCCEEEEEEcc-----------------------------------------------------------
Confidence 24577777 677666521
Q ss_pred CCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-----CCEEEEE
Q 004255 323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-----GNNINIF 397 (765)
Q Consensus 323 ~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d-----Gt~IrVW 397 (765)
...|.|.+||+.+.+.+.++... .++.++|||||++|+|++.. ++.++||
T Consensus 122 -----------------------n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw 176 (194)
T PF08662_consen 122 -----------------------NLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIW 176 (194)
T ss_pred -----------------------CCCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEE
Confidence 23478999999998888877543 47899999999999999863 5669999
Q ss_pred eC
Q 004255 398 RI 399 (765)
Q Consensus 398 di 399 (765)
+.
T Consensus 177 ~~ 178 (194)
T PF08662_consen 177 SF 178 (194)
T ss_pred Ee
Confidence 97
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=2e-06 Score=100.85 Aligned_cols=231 Identities=15% Similarity=0.095 Sum_probs=130.0
Q ss_pred CEEEEEECCCCeEEEEEeCC-CCEEEEEecCC-----eE-EEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 004255 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR-----IV-AVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~-----~L-aV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~ 245 (765)
++|+||+..||++++.|.++ .++..+.+.++ ++ ...+++.|++||-..++++.++..+-.+
T Consensus 37 ~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v------------ 104 (792)
T KOG1963|consen 37 NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPV------------ 104 (792)
T ss_pred CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCce------------
Confidence 58999999999999999876 58888887762 22 4467889999999999988887632110
Q ss_pred ccceeEEcc-----ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeeccccccc
Q 004255 246 GYGPMAVGP-----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 320 (765)
Q Consensus 246 ~~~~~Alsp-----r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~ 320 (765)
..+-+.| +.++|.+.... .+..... .+..++.....+-+......++
T Consensus 105 --~~~~~~~~~a~~s~~~~~s~~~~------~~~~~~s--------------------~~~~~q~~~~~~~t~~~~~~d~ 156 (792)
T KOG1963|consen 105 --HALVYKPAQADISANVYVSVEDY------SILTTFS--------------------KKLSKQSSRFVLATFDSAKGDF 156 (792)
T ss_pred --eEEEechhHhCccceeEeecccc------eeeeecc--------------------cccccceeeeEeeeccccchhh
Confidence 1111111 12233221100 0000000 0000111111110110000000
Q ss_pred CCCC-CCCCccCCCccccccccccccCCCCeEEEEECCCCcEEE-E---eccCCCCeEEEEECCCCCEEEEEEcCCCEEE
Q 004255 321 LPDG-SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS-Q---FKAHTSPISALCFDPSGTLLVTASVYGNNIN 395 (765)
Q Consensus 321 ~p~~-s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~-~---~~aH~~~IsaLaFSpdG~lLATaS~dGt~Ir 395 (765)
.... -..+...++.+. ......+..+.+|+..++.... . -..|+.++.+.+|||.++++|+|..||+ |.
T Consensus 157 ~~~~~~~~~I~~~~~ge-----~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGr-I~ 230 (792)
T KOG1963|consen 157 LKEHQEPKSIVDNNSGE-----FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGR-IL 230 (792)
T ss_pred hhhhcCCccEEEcCCce-----EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCc-EE
Confidence 0000 001111111111 1112344567788887754111 1 1257888999999999999999999887 99
Q ss_pred EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255 396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 396 VWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g 464 (765)
||.---. ++. + .....|+. |.+.|.+++||+||.+|.+|+..+.+-+|.+.+.+
T Consensus 231 vw~d~~~-----~~~-----~---~t~t~lHW--H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 231 VWRDFGS-----SDD-----S---ETCTLLHW--HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred EEecccc-----ccc-----c---ccceEEEe--cccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 9963110 010 0 11122333 33579999999999999999999999999998865
No 194
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1.2e-06 Score=92.43 Aligned_cols=39 Identities=15% Similarity=0.389 Sum_probs=34.9
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (765)
Q Consensus 360 ~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi 399 (765)
+.+..|..|.++|..+.|+-.|+.|++.+.||. +|+|..
T Consensus 279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~-VRLWka 317 (361)
T KOG2445|consen 279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC-VRLWKA 317 (361)
T ss_pred EEeeeccCCCCceEEEEEeeeeeEEeecCCCce-eeehhh
Confidence 356778899999999999999999999999775 999985
No 195
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=1.5e-06 Score=103.23 Aligned_cols=106 Identities=14% Similarity=0.177 Sum_probs=75.0
Q ss_pred cccCCCCeEEEEECCCCcE--EEEeccCC--C-CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 004255 343 ADMDNAGIVVVKDFVTRAI--ISQFKAHT--S-PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~~~--i~~~~aH~--~-~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~ 417 (765)
++++++|.|++||++.... ..++..|. + .+++|..+++...+|+|+. + .|+||++. |..-..
T Consensus 1273 vSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q-~ikIy~~~--------G~~l~~--- 1339 (1387)
T KOG1517|consen 1273 VSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q-LIKIYSLS--------GEQLNI--- 1339 (1387)
T ss_pred eeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c-eEEEEecC--------hhhhcc---
Confidence 4567899999999987432 23344554 4 5999999999999999997 4 69999984 210000
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 418 s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
.+-+...-|.....+.|++|+|---.||+|+.|.+|-||...+.
T Consensus 1340 --~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1340 --IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred --cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 01011111222335799999999999999999999999987653
No 196
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.63 E-value=4.2e-06 Score=90.98 Aligned_cols=93 Identities=17% Similarity=0.286 Sum_probs=65.2
Q ss_pred eEEEEECCC-CcEEEEeccCCCCeEEEEECC------------------CCCEEEEEEcCCCEEEEEeCCCCcccCCCCC
Q 004255 350 IVVVKDFVT-RAIISQFKAHTSPISALCFDP------------------SGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410 (765)
Q Consensus 350 ~V~IwDl~s-~~~i~~~~aH~~~IsaLaFSp------------------dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~ 410 (765)
+..+++-.. .+++..+.+-..+..++.|+| -+..+|.|.. + .+-|||.++.
T Consensus 262 ~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~-svyvydtq~~-------- 331 (434)
T KOG1009|consen 262 TSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-N-SVYVYDTQTL-------- 331 (434)
T ss_pred eeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-c-eEEEeccccc--------
Confidence 344554332 356677777777777777775 2345677777 3 4899998542
Q ss_pred CccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 411 ~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
.+++... +.|-..|++++||+||.+|+.+|.||.+-+--+++
T Consensus 332 ---------~P~~~v~-nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 332 ---------EPLAVVD-NIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred ---------cceEEEe-eeeeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence 3555443 44556799999999999999999999988766654
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=5.4e-07 Score=98.22 Aligned_cols=74 Identities=23% Similarity=0.325 Sum_probs=61.9
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 004255 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (765)
Q Consensus 370 ~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~ 449 (765)
..|++|+.|+||+++|-|+.+|. |-|++.... +.++..++- |...|+.|.|+||.+++++.
T Consensus 282 ~siSsl~VS~dGkf~AlGT~dGs-Vai~~~~~l-----------------q~~~~vk~a-H~~~VT~ltF~Pdsr~~~sv 342 (398)
T KOG0771|consen 282 KSISSLAVSDDGKFLALGTMDGS-VAIYDAKSL-----------------QRLQYVKEA-HLGFVTGLTFSPDSRYLASV 342 (398)
T ss_pred CcceeEEEcCCCcEEEEeccCCc-EEEEEecee-----------------eeeEeehhh-heeeeeeEEEcCCcCccccc
Confidence 57999999999999999999776 889998542 455555443 44579999999999999999
Q ss_pred eCCCcEEEEeCCC
Q 004255 450 SSKGTCHVFVLSP 462 (765)
Q Consensus 450 S~dgTVhIwdl~~ 462 (765)
|.+.+++|..|.-
T Consensus 343 Ss~~~~~v~~l~v 355 (398)
T KOG0771|consen 343 SSDNEAAVTKLAV 355 (398)
T ss_pred ccCCceeEEEEee
Confidence 9999999999864
No 198
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.63 E-value=3.3e-07 Score=93.27 Aligned_cols=93 Identities=15% Similarity=0.296 Sum_probs=71.4
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 345 ~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG--t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
+..++.|.|||+. ++.+..|. ..+++.|.|||+|++||+|+.++ ..+.+||+.. . ..+
T Consensus 79 g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-------~----------~~i 138 (194)
T PF08662_consen 79 GSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-------K----------KKI 138 (194)
T ss_pred ccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-------C----------EEe
Confidence 3456689999997 66667774 56889999999999999998631 2499999854 1 345
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeC------CCcEEEEeCC
Q 004255 423 YKLHRGITSATIQDICFSHYSQWIAIVSS------KGTCHVFVLS 461 (765)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~------dgTVhIwdl~ 461 (765)
.+.. + ..+..++|||||++|++++. |+.++||+..
T Consensus 139 ~~~~---~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 139 STFE---H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eccc---c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 4443 2 23789999999999999875 7889999975
No 199
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=2.3e-06 Score=92.65 Aligned_cols=105 Identities=21% Similarity=0.205 Sum_probs=85.4
Q ss_pred cccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255 343 ADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~-~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~ 421 (765)
+++..-+.|++||...+ +++.+|.--..+|+++...|+|+++.+|...|. +..||++. + .+
T Consensus 220 at~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~-------~----------kl 281 (412)
T KOG3881|consen 220 ATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRG-------G----------KL 281 (412)
T ss_pred EEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccC-------c----------ee
Confidence 34556689999999875 578889888899999999999999999999775 89999864 2 23
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~ 466 (765)
+.....|.+ +.|.+|--+|..++||+++.|..++|||+.+.+-.
T Consensus 282 ~g~~~kg~t-Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 282 LGCGLKGIT-GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred eccccCCcc-CCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 333234544 46999999999999999999999999999985443
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.59 E-value=1.4e-06 Score=99.00 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=60.0
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 004255 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT 430 (765)
Q Consensus 351 V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~ 430 (765)
|.+||+.+++ +..+..|...+.+.+|+|||+.|+.++..+...+||++... + .....+ +..
T Consensus 274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~------~----------~~~~~l--~~~ 334 (429)
T PRK01742 274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS------G----------GGASLV--GGR 334 (429)
T ss_pred EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC------C----------CCeEEe--cCC
Confidence 5556776665 45566777778899999999988877754445899987431 1 011111 111
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 431 SATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 431 ~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
. .+++|||||++|+.++.++ +.+||+..
T Consensus 335 -~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~ 362 (429)
T PRK01742 335 -G--YSAQISADGKTLVMINGDN-VVKQDLTS 362 (429)
T ss_pred -C--CCccCCCCCCEEEEEcCCC-EEEEECCC
Confidence 1 4578999999999988866 44588764
No 201
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=4.4e-05 Score=86.60 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=36.5
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe--CC--eEEEEECCCCce
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--AT--QIYCFDALTLEN 223 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~--~~--~I~iwD~~t~~~ 223 (765)
..|.+||+.+|+......+...+.+.+++| +.|+... ++ .|++||+.+++.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL 279 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 379999999998765555666666778887 5666543 22 599999988763
No 202
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=2.1e-07 Score=104.31 Aligned_cols=111 Identities=18% Similarity=0.239 Sum_probs=83.8
Q ss_pred ccccCCCCeEEEEECCC--------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 004255 342 GADMDNAGIVVVKDFVT--------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (765)
Q Consensus 342 ~~~~~~dG~V~IwDl~s--------~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~ 413 (765)
+.++..+|++.+|.+.. -+.+.+|++|.+||.|++..+.|..+.||+.||+ ||.|++-+... -.-++
T Consensus 309 lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~-I~~w~~p~n~d----p~ds~ 383 (577)
T KOG0642|consen 309 LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT-IRCWNLPPNQD----PDDSY 383 (577)
T ss_pred EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce-eeeeccCCCCC----ccccc
Confidence 34788999999999932 2478899999999999999999999999999775 99998843210 00001
Q ss_pred ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 414 ~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
+. ..+-...-|++. .||.+++|..-..|+++|.|||+++|....
T Consensus 384 dp----~vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 384 DP----SVLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTE 427 (577)
T ss_pred Cc----chhccceecccc-ceeeeeecccccceeeecCCceEEeeccCC
Confidence 10 112222246654 599999999999999999999999998753
No 203
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.52 E-value=2.7e-05 Score=87.44 Aligned_cols=86 Identities=15% Similarity=0.187 Sum_probs=55.2
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt--~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
.|.++|+.+++. ..+..+...+...+|+|||++|+.++.++. .|.+||+.. + ....+..
T Consensus 303 ~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-------~-----------~~~~l~~ 363 (417)
T TIGR02800 303 QIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-------G-----------GERVLTD 363 (417)
T ss_pred eEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-------C-----------CeEEccC
Confidence 566777776654 334444556778899999999998887542 466777643 2 1122221
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCcEEE
Q 004255 428 GITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~dgTVhI 457 (765)
+ ......+|+|||++|+..+.++....
T Consensus 364 ~---~~~~~p~~spdg~~l~~~~~~~~~~~ 390 (417)
T TIGR02800 364 T---GLDESPSFAPNGRMILYATTRGGRGV 390 (417)
T ss_pred C---CCCCCceECCCCCEEEEEEeCCCcEE
Confidence 1 12345689999999998888764433
No 204
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.50 E-value=0.00026 Score=78.38 Aligned_cols=99 Identities=14% Similarity=0.155 Sum_probs=67.5
Q ss_pred CCCeEEEEECCCC-----cEEEEecc-------CCCCeEEEEECCCCCEEEEEEc---------CCCEEEEEeCCCCccc
Q 004255 347 NAGIVVVKDFVTR-----AIISQFKA-------HTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMR 405 (765)
Q Consensus 347 ~dG~V~IwDl~s~-----~~i~~~~a-------H~~~IsaLaFSpdG~lLATaS~---------dGt~IrVWdi~~~~~~ 405 (765)
..|.|.+.|+... +.+..+.. ..+.+.-++|+|+|+.|..+.. .++.|.|+|+.+
T Consensus 213 ~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t---- 288 (352)
T TIGR02658 213 YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT---- 288 (352)
T ss_pred cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC----
Confidence 3389999996443 33333321 1223334999999999888542 125789999865
Q ss_pred CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEEe-CCCcEEEEeCCCCCC
Q 004255 406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVS-SKGTCHVFVLSPFGG 465 (765)
Q Consensus 406 ~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~Las~S-~dgTVhIwdl~~~gg 465 (765)
+ +.+.++.-| ..+..|+||||++ +|.+.. .+++|.|+|+...+.
T Consensus 289 ---~----------kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 289 ---G----------KRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred ---C----------eEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 2 466666544 3589999999999 877776 589999999876543
No 205
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.48 E-value=2.4e-05 Score=89.11 Aligned_cols=90 Identities=12% Similarity=0.174 Sum_probs=59.5
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt--~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
.|.+||+.+++. ..+..|.......+|+|||+.|+.++..+. .|.+||+.. + ....+..
T Consensus 271 ~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-------~-----------~~~~lt~ 331 (435)
T PRK05137 271 DIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-------S-----------NPRRISF 331 (435)
T ss_pred eEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-------C-----------CeEEeec
Confidence 577888887764 456666666778999999999998875432 466667532 1 1222322
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCC---cEEEEeC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSSKG---TCHVFVL 460 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~dg---TVhIwdl 460 (765)
+ ...+...+|||||++|+..+.++ .|.+||+
T Consensus 332 ~--~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 332 G--GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred C--CCcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence 2 12356688999999999887543 3555665
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=5.9e-07 Score=97.91 Aligned_cols=130 Identities=15% Similarity=0.221 Sum_probs=89.4
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc--cC-------------
Q 004255 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM--RS------------- 406 (765)
Q Consensus 342 ~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~--~~------------- 406 (765)
++.++.||++|||+..+...+..+.+|...|..|.|||||++||+-+.+ ..+||++.+... ..
T Consensus 159 latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d--~~~VW~~~~g~~~a~~t~~~k~~~~~~cR 236 (398)
T KOG0771|consen 159 LATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD--SARVWSVNTGAALARKTPFSKDEMFSSCR 236 (398)
T ss_pred eeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC--ceEEEEeccCchhhhcCCcccchhhhhce
Confidence 3467899999999999888888999999999999999999999999995 489999976310 00
Q ss_pred --CCCCC-cccc-----CCcceEEEEE--ecc---------cc-cccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255 407 --GSGNH-KYDW-----NSSHVHLYKL--HRG---------IT-SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 407 --~sG~~-~~~~-----~~s~~~l~~l--~rG---------~~-~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~ 466 (765)
....+ ..-. ......++++ ..+ .. ...|.+++-|+||+++|.|+.||.|-|++.......
T Consensus 237 F~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~ 316 (398)
T KOG0771|consen 237 FSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL 316 (398)
T ss_pred ecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeee
Confidence 00000 0000 0000111111 111 00 125899999999999999999999999999876553
Q ss_pred cc-ccccc
Q 004255 467 SG-FQTLS 473 (765)
Q Consensus 467 ~~-~~~h~ 473 (765)
.- -+.|.
T Consensus 317 ~~vk~aH~ 324 (398)
T KOG0771|consen 317 QYVKEAHL 324 (398)
T ss_pred Eeehhhhe
Confidence 32 24564
No 207
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.45 E-value=1.9e-05 Score=89.95 Aligned_cols=93 Identities=22% Similarity=0.262 Sum_probs=61.2
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEE--eCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF--RIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVW--di~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
..|.+||+.+++. ..+..|.......+|+|||+.|+..+..+....|| |+.. +. .+.+ .+
T Consensus 272 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-------g~--------~~~l-t~- 333 (433)
T PRK04922 272 PEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-------GS--------AERL-TF- 333 (433)
T ss_pred ceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-------CC--------eEEe-ec-
Confidence 3688999988764 45666666667789999999999887644334555 4422 20 1122 22
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCC---cEEEEeCCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 462 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S~dg---TVhIwdl~~ 462 (765)
.| ......+|||||++|+..+.++ .|.+||+..
T Consensus 334 ~g---~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~ 369 (433)
T PRK04922 334 QG---NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST 369 (433)
T ss_pred CC---CCccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence 12 1234689999999999876543 578888754
No 208
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.45 E-value=0.00032 Score=77.54 Aligned_cols=84 Identities=19% Similarity=0.363 Sum_probs=59.1
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S 450 (765)
....|+++|||++|..+......|-+|++... .| ....+..+..+ ...-..++|+|||++|+++.
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-----~g--------~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPA-----TG--------TLTLVQTVPTG--GKFPRHFAFSPDGRYLYVAN 310 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-----TT--------TEEEEEEEEES--SSSEEEEEE-TTSSEEEEEE
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecC-----CC--------ceEEEEEEeCC--CCCccEEEEeCCCCEEEEEe
Confidence 57889999999999988887778999999431 12 11233333321 12368999999999999887
Q ss_pred -CCCcEEEEeCCCCCCCccc
Q 004255 451 -SKGTCHVFVLSPFGGDSGF 469 (765)
Q Consensus 451 -~dgTVhIwdl~~~gg~~~~ 469 (765)
.+++|.+|+++...|....
T Consensus 311 ~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 311 QDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp TTTTEEEEEEEETTTTEEEE
T ss_pred cCCCeEEEEEEeCCCCcEEE
Confidence 5679999999877765443
No 209
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.42 E-value=2.3e-07 Score=103.36 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=70.2
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 004255 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (765)
Q Consensus 361 ~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS 440 (765)
++....--++.|+..+|+|||++||+.|.||. +||||... ++|.-+.+-. -+-..|++||
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt------------------~eLlg~mkSY-FGGLLCvcWS 341 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDT------------------QELLGVMKSY-FGGLLCVCWS 341 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccH------------------HHHHHHHHhh-ccceEEEEEc
Confidence 34444334568999999999999999999775 99999854 1221111110 1248899999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCCCcccccccCCCCC
Q 004255 441 HYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478 (765)
Q Consensus 441 pDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~~~~~ 478 (765)
|||+||++|+.|.-|.||.+....-..--++|.+.+..
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~ 379 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSV 379 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceee
Confidence 99999999999999999999865433334677765433
No 210
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.42 E-value=1.4e-05 Score=86.07 Aligned_cols=98 Identities=20% Similarity=0.317 Sum_probs=70.5
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
+..|+|||..++..+....---+.++-|.|||||.+|..|+-|+ +.+||+.... |- ...+.+-
T Consensus 217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~da-vfrlw~e~q~------------wt---~erw~lg- 279 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA-VFRLWQENQS------------WT---KERWILG- 279 (445)
T ss_pred cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccc-eeeeehhccc------------ce---ecceecc-
Confidence 56899999999887665544557889999999999999999965 5999976321 10 1112222
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~ 466 (765)
...|+.-+|+|+|++|.-+.... -.||.+.-.+..
T Consensus 280 ---sgrvqtacWspcGsfLLf~~sgs-p~lysl~f~~~~ 314 (445)
T KOG2139|consen 280 ---SGRVQTACWSPCGSFLLFACSGS-PRLYSLTFDGED 314 (445)
T ss_pred ---CCceeeeeecCCCCEEEEEEcCC-ceEEEEeecCCC
Confidence 23699999999999987776554 468887655443
No 211
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=2.8e-05 Score=88.61 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=61.0
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 004255 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (765)
Q Consensus 350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~ 429 (765)
.|.+||+.+++.. .+..+...+...+|+|||+.|+..+.++...+||.+... .| ...++...
T Consensus 268 ~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-----~g-----------~~~~lt~~- 329 (429)
T PRK03629 268 NLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-----GG-----------APQRITWE- 329 (429)
T ss_pred EEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-----CC-----------CeEEeecC-
Confidence 4888999887654 444455577889999999999888876545677754221 01 11222211
Q ss_pred ccccEEEEEEccCCCEEEEEeCC-C--cEEEEeCCC
Q 004255 430 TSATIQDICFSHYSQWIAIVSSK-G--TCHVFVLSP 462 (765)
Q Consensus 430 ~~a~I~slaFSpDg~~Las~S~d-g--TVhIwdl~~ 462 (765)
.....+.+|||||++|+..+.+ + .+.+||+..
T Consensus 330 -~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~ 364 (429)
T PRK03629 330 -GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 364 (429)
T ss_pred -CCCccCEEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 1235678999999999887654 3 366667653
No 212
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.41 E-value=7.4e-06 Score=91.51 Aligned_cols=202 Identities=19% Similarity=0.202 Sum_probs=130.1
Q ss_pred CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
..+|++++.+| |.|.+ ..+.+.+.++.|-|.|.+-.+.|+.. -|| . +|+
T Consensus 75 ~d~~~i~s~DGkf~il~--k~~rVE~sv~AH~~A~~~gRW~~dGt------------gLl-t-~GE-------------- 124 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN--KSARVERSISAHAAAISSGRWSPDGA------------GLL-T-AGE-------------- 124 (737)
T ss_pred cceEEEEcCCceEEEec--ccchhhhhhhhhhhhhhhcccCCCCc------------eee-e-ecC--------------
Confidence 45788888777 88876 46889999999999999999998642 133 2 332
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE-eCCCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEec
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL-RFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTY 230 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL-~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~ 230 (765)
++.|++|+- +|-+..++ ++..+|++++..| .-++-+..++++|=-+.-.-..
T Consensus 125 ------------------DG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~------ 179 (737)
T KOG1524|consen 125 ------------------DGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKI------ 179 (737)
T ss_pred ------------------CceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccce------
Confidence 368999985 56555555 4678999999877 3444455556654322111000
Q ss_pred CCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccc
Q 004255 231 PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS 310 (765)
Q Consensus 231 p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ 310 (765)
+ +|=|--+ .+++ +.|
T Consensus 180 ---------------------i--~WkAHDG--iiL~----~~W------------------------------------ 194 (737)
T KOG1524|consen 180 ---------------------I--RWRAHDG--LVLS----LSW------------------------------------ 194 (737)
T ss_pred ---------------------e--EEeccCc--EEEE----eec------------------------------------
Confidence 0 2222211 0000 001
Q ss_pred eeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC
Q 004255 311 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY 390 (765)
Q Consensus 311 ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d 390 (765)
.+-..-+++++.|-..+|||.. |..+.+-.+|..||++++|+|+ +++|.+|.
T Consensus 195 -------------------------~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~- 246 (737)
T KOG1524|consen 195 -------------------------STQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY- 246 (737)
T ss_pred -------------------------CccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-
Confidence 0000013466788899999975 5666667789999999999999 77777776
Q ss_pred CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcE
Q 004255 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTC 455 (765)
Q Consensus 391 Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTV 455 (765)
++.|+ . +. ..+.|..++||+||..+++|+..|.+
T Consensus 247 -nt~R~-~-------------------------~p----~~GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 247 -NTARF-S-------------------------SP----RVGSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred -eeeee-c-------------------------CC----CccceEEEEEcCCCceeeccccCceE
Confidence 23441 1 11 12358899999999999999998864
No 213
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.37 E-value=3.6e-06 Score=87.27 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=51.6
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi 399 (765)
++++=||.||||..++.++++.++-|...|++++|+||..++|.||.|+ .|-+|++
T Consensus 267 ATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~-rISLWkL 322 (323)
T KOG0322|consen 267 ATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDA-RISLWKL 322 (323)
T ss_pred eecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCc-eEEeeec
Confidence 4667899999999999999999999999999999999999999999966 4999986
No 214
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=0.00011 Score=75.72 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=54.3
Q ss_pred CEEEEEECCCCeEEEEEeCC-CCEEEEEe---cCCeEEEEeCCeEEEEECCCCceeEEEEecCCcccCC
Q 004255 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRC---SPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAG 237 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~-s~V~sV~~---s~~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~ 237 (765)
+.+.-||+++|+.-.+++.| +.|.+|.. ++++|..+-|+++++||.+|.++..+|..+.+|...+
T Consensus 136 ~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lR 204 (325)
T KOG0649|consen 136 GVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLR 204 (325)
T ss_pred eEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcC
Confidence 58999999999999999977 47888775 4577777778899999999999999998877765443
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.36 E-value=3e-05 Score=88.25 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=59.3
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 004255 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT 430 (765)
Q Consensus 351 V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~ 430 (765)
|.++|+.++. +..+..|...+...+|+|||+.|+..+..+....||.+... .+ ..+.+ .+. |
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~-----~g--------~~~~l-t~~-g-- 327 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS-----GG--------AAQRV-TFT-G-- 327 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC-----CC--------ceEEE-ecC-C--
Confidence 4445555444 45566666556678999999999887765555788876321 01 01222 222 2
Q ss_pred cccEEEEEEccCCCEEEEEeCCC---cEEEEeCCC
Q 004255 431 SATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 462 (765)
Q Consensus 431 ~a~I~slaFSpDg~~Las~S~dg---TVhIwdl~~ 462 (765)
......+|||||++|+..+.++ .|.+||+..
T Consensus 328 -~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~ 361 (427)
T PRK02889 328 -SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT 361 (427)
T ss_pred -CCcCceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence 1234678999999999888665 588888765
No 216
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.36 E-value=1.2e-05 Score=82.55 Aligned_cols=108 Identities=12% Similarity=0.154 Sum_probs=73.0
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE-CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF-DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaF-SpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
.++.||.+.-||+++|+...++++|+.-|-++.- +.+| .+.|+++||+ +||||+++......-+ . ..-
T Consensus 131 ~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~-qilsG~EDGt-vRvWd~kt~k~v~~ie-----~----yk~ 199 (325)
T KOG0649|consen 131 FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG-QILSGAEDGT-VRVWDTKTQKHVSMIE-----P----YKN 199 (325)
T ss_pred EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc-ceeecCCCcc-EEEEeccccceeEEec-----c----ccC
Confidence 3457899999999999999999999999999998 5555 5669999886 9999998731100000 0 000
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
..+.|-+-..+|-+++-+ ..||++|... .+-||.+.....
T Consensus 200 ~~~lRp~~g~wigala~~--edWlvCGgGp-~lslwhLrsse~ 239 (325)
T KOG0649|consen 200 PNLLRPDWGKWIGALAVN--EDWLVCGGGP-KLSLWHLRSSES 239 (325)
T ss_pred hhhcCcccCceeEEEecc--CceEEecCCC-ceeEEeccCCCc
Confidence 011232222357666655 4599888654 478999976543
No 217
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.36 E-value=0.00028 Score=80.92 Aligned_cols=51 Identities=22% Similarity=0.204 Sum_probs=34.7
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEE-e-CC--eEEEEECCCCce
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG-L-AT--QIYCFDALTLEN 223 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~-~-~~--~I~iwD~~t~~~ 223 (765)
..|.+||+.+++......+.....+.+++| +.|+.. . ++ +|+++|+.+++.
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence 379999999987654444555555677877 556643 2 22 499999988763
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.34 E-value=1e-06 Score=98.44 Aligned_cols=71 Identities=15% Similarity=0.278 Sum_probs=60.6
Q ss_pred CCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (765)
Q Consensus 326 ~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~ 401 (765)
...+.+++++++++ ..++||.+||||+.+.+++..++.--+.+.|++|||||+++||+++|| .+.||.+..
T Consensus 293 in~f~FS~DG~~LA----~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVtVwSf~e 363 (636)
T KOG2394|consen 293 INEFAFSPDGKYLA----TVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVTVWSFEE 363 (636)
T ss_pred ccceeEcCCCceEE----EEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc-eEEEEEecc
Confidence 44566777777654 668999999999999998888888888999999999999999999966 799999853
No 219
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.31 E-value=1.1e-06 Score=64.98 Aligned_cols=38 Identities=26% Similarity=0.655 Sum_probs=35.2
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 004255 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR 398 (765)
Q Consensus 360 ~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWd 398 (765)
+++.+|++|.++|.+|+|+|++.+|||++.|+ .|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~-~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDG-TIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTS-EEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCC-EEEEEC
Confidence 57889999999999999999999999999965 699997
No 220
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.31 E-value=2.7e-05 Score=87.42 Aligned_cols=79 Identities=22% Similarity=0.245 Sum_probs=59.7
Q ss_pred eEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 004255 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (765)
Q Consensus 98 ~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~l 177 (765)
...|.+|.|.|.++++.-+ +-|||. |.+ +..+.|
T Consensus 43 E~eL~GH~GCVN~LeWn~d-------------G~lL~S--GSD-------------------------------D~r~iv 76 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNAD-------------GELLAS--GSD-------------------------------DTRLIV 76 (758)
T ss_pred hhhhccccceecceeecCC-------------CCEEee--cCC-------------------------------cceEEe
Confidence 3567899999999999843 347754 321 368999
Q ss_pred EECCCCeEEEEEe--CCCCEEEEEecC----CeEEEEeC-CeEEEEECCCCc
Q 004255 178 YSFQSHCYEHVLR--FRSSVCMVRCSP----RIVAVGLA-TQIYCFDALTLE 222 (765)
Q Consensus 178 Wdlktg~~v~tL~--~~s~V~sV~~s~----~~LaV~~~-~~I~iwD~~t~~ 222 (765)
||.-..+++|.+. +...|++++|-| ++|+.|.. ..|++||+...+
T Consensus 77 Wd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~ 128 (758)
T KOG1310|consen 77 WDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSK 128 (758)
T ss_pred ecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccc
Confidence 9999999999996 446899999976 56666554 469999987643
No 221
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=0.00028 Score=80.46 Aligned_cols=80 Identities=14% Similarity=0.197 Sum_probs=51.2
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 004255 362 ISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (765)
Q Consensus 362 i~~~~aH~~~IsaLaFSpdG~lLATaS~dG--t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaF 439 (765)
...+..+...+...+|||||++||..+.++ ..|.+||+.. | ....+..+ ...+.+.+|
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-------g-----------~~~~Lt~~--~~~~~~p~w 378 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-------G-----------RDYQLTTS--PENKESPSW 378 (428)
T ss_pred eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-------C-----------CeEEccCC--CCCccceEE
Confidence 344545555677889999999998776543 3588899854 2 22233322 123677999
Q ss_pred ccCCCEEEEEeC-CC--cEEEEeCC
Q 004255 440 SHYSQWIAIVSS-KG--TCHVFVLS 461 (765)
Q Consensus 440 SpDg~~Las~S~-dg--TVhIwdl~ 461 (765)
+|||++|+..+. ++ .+.++++.
T Consensus 379 SpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 379 AIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECC
Confidence 999999886543 33 35555554
No 222
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.24 E-value=0.00013 Score=81.78 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=61.2
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt--~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
..|.+||+.++.. ..+..|.......+|+|||+.|+..+.++. .|.++|+.. + ....+.
T Consensus 258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-------~-----------~~~~l~ 318 (417)
T TIGR02800 258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-------G-----------EVRRLT 318 (417)
T ss_pred ccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-------C-----------CEEEee
Confidence 3578888887654 445555555567799999999987776543 355555532 1 122222
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCC---cEEEEeCCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 462 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S~dg---TVhIwdl~~ 462 (765)
.+ ...+...+|||||++|+.++.++ .|.+||+..
T Consensus 319 ~~--~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 319 FR--GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred cC--CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 11 12356789999999999998876 677777764
No 223
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=1.3e-05 Score=90.16 Aligned_cols=56 Identities=21% Similarity=0.408 Sum_probs=51.8
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 004255 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~ 400 (765)
.+..++.|+++|..+++.+....+|...++++++.|+|-+|++++.|+. +++|.+.
T Consensus 506 ~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld 561 (577)
T KOG0642|consen 506 TAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLD 561 (577)
T ss_pred ecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhcc
Confidence 4568999999999999999999999999999999999999999999775 9999873
No 224
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.22 E-value=3e-06 Score=96.31 Aligned_cols=144 Identities=15% Similarity=0.155 Sum_probs=106.3
Q ss_pred CEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCcc
Q 004255 194 SVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGR 271 (765)
Q Consensus 194 ~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~ 271 (765)
.|++|+|.| ..|+++.++++++||..+|.++++|++|... + .-+||+-+..
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDt-------------V-------ycVAys~dGk------- 66 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDT-------------V-------YCVAYAKDGK------- 66 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccce-------------E-------EEEEEccCCc-------
Confidence 788899987 5677777899999999999999999988752 1 1245543210
Q ss_pred ccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeE
Q 004255 272 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351 (765)
Q Consensus 272 ~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V 351 (765)
. .++++.|..|
T Consensus 67 --------------------------------r-------------------------------------FASG~aDK~V 77 (1081)
T KOG1538|consen 67 --------------------------------R-------------------------------------FASGSADKSV 77 (1081)
T ss_pred --------------------------------e-------------------------------------eccCCCceeE
Confidence 0 1234678899
Q ss_pred EEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 004255 352 VVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT 430 (765)
Q Consensus 352 ~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~ 430 (765)
.||.-.- ...++ .|...|.||.|+|-...|||+|-.+ .-+|.... ..+.+.+ .
T Consensus 78 I~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsd--FglWS~~q------------------K~V~K~k---s 131 (1081)
T KOG1538|consen 78 IIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSD--FGLWSPEQ------------------KSVSKHK---S 131 (1081)
T ss_pred EEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhh--ccccChhh------------------hhHHhhh---h
Confidence 9997543 23343 6999999999999999999999844 67887632 1121211 2
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255 431 SATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (765)
Q Consensus 431 ~a~I~slaFSpDg~~Las~S~dgTVhIwd 459 (765)
.+.|.+++|..||++|+.|-.+|||.|-+
T Consensus 132 s~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 132 SSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred heeEEEeeecCCCcEEEEeccCceEEeec
Confidence 34689999999999999999999999863
No 225
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.21 E-value=3.1e-05 Score=90.14 Aligned_cols=101 Identities=17% Similarity=0.080 Sum_probs=71.2
Q ss_pred ccCCCCeEEEEECCCC--------cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 004255 344 DMDNAGIVVVKDFVTR--------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~--------~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~ 415 (765)
-|...|.|.--+-... +....+..|.++|.++.++|=+..+...+-|. ++|||..... -
T Consensus 365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW-~vriWs~~~~------~------ 431 (555)
T KOG1587|consen 365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDW-TVRIWSEDVI------A------ 431 (555)
T ss_pred EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccc-eeEeccccCC------C------
Confidence 4566787766332221 23446778999999999999888776666644 5999987421 0
Q ss_pred CCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCC
Q 004255 416 NSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 416 ~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~ 463 (765)
..++.+.+. .+.|++++|||-- ..+|++..||++.||||...
T Consensus 432 ----~Pl~~~~~~--~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 432 ----SPLLSLDSS--PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ----Ccchhhhhc--cceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 255555442 2349999999975 57888899999999999764
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.19 E-value=7.6e-05 Score=85.27 Aligned_cols=257 Identities=15% Similarity=0.108 Sum_probs=151.6
Q ss_pred CCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 74 ~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
++.-|+++..+.+-|||+++ |.+..+|.+|...|.+|++..+ +.+.|. |.
T Consensus 23 DGsqL~lAAg~rlliyD~nd-G~llqtLKgHKDtVycVAys~d-------------GkrFAS--G~-------------- 72 (1081)
T KOG1538|consen 23 DGTQLILAAGSRLLVYDTSD-GTLLQPLKGHKDTVYCVAYAKD-------------GKRFAS--GS-------------- 72 (1081)
T ss_pred CCceEEEecCCEEEEEeCCC-cccccccccccceEEEEEEccC-------------Cceecc--CC--------------
Confidence 46678888888999999964 7788999999999999999854 225543 21
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecC
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYP 231 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~p 231 (765)
+++.|.+|+-+ .+-+-.+.+.+.|.++.||| ..|+++.-...-+|....-. +.-|.
T Consensus 73 -----------------aDK~VI~W~~k-lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~----V~K~k 130 (1081)
T KOG1538|consen 73 -----------------ADKSVIIWTSK-LEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS----VSKHK 130 (1081)
T ss_pred -----------------CceeEEEeccc-ccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhh----HHhhh
Confidence 25789999875 33333445667999999999 67887766677788654321 11111
Q ss_pred CcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccc
Q 004255 232 VPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (765)
Q Consensus 232 ~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~ 309 (765)
.. . ....+++.. .|||.+--+. .++.-..+. . .++.
T Consensus 131 ss-------~----R~~~CsWtnDGqylalG~~nG------TIsiRNk~g------------E-------------ek~~ 168 (1081)
T KOG1538|consen 131 SS-------S----RIICCSWTNDGQYLALGMFNG------TISIRNKNG------------E-------------EKVK 168 (1081)
T ss_pred hh-------e----eEEEeeecCCCcEEEEeccCc------eEEeecCCC------------C-------------cceE
Confidence 10 0 123345544 5666653221 110000000 0 0000
Q ss_pred ceeecccccccCCCCCCCC---ccCCCccccccccccccCCCCeEEEEECC--------CCcEEEEeccCCCCeEEEEEC
Q 004255 310 SKTLSKYCQELLPDGSSSP---VSPNSVWKVGRHAGADMDNAGIVVVKDFV--------TRAIISQFKAHTSPISALCFD 378 (765)
Q Consensus 310 ~ktls~~~~~~~p~~s~~~---~s~s~~~~~~~~~~~~~~~dG~V~IwDl~--------s~~~i~~~~aH~~~IsaLaFS 378 (765)
+ -.|++.+++ ...+|...+ +.+.++-|-|.. +|+.+..=+.-.-.-.|+.+-
T Consensus 169 ---I------~Rpgg~Nspiwsi~~~p~sg~--------G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf 231 (1081)
T KOG1538|consen 169 ---I------ERPGGSNSPIWSICWNPSSGE--------GRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYF 231 (1081)
T ss_pred ---E------eCCCCCCCCceEEEecCCCCC--------CccceEEEEeccceeEEEEecceeecccccCCCCchhheec
Confidence 0 123332222 111221111 122334444432 133332212222233478888
Q ss_pred CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 004255 379 PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458 (765)
Q Consensus 379 pdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIw 458 (765)
++|.++..|+.|+. +++|--. | .++-++ |....+||.++..|+|++++.|..|||+--|
T Consensus 232 ~NGEy~LiGGsdk~-L~~fTR~--------G----------vrLGTv--g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 232 TNGEYILLGGSDKQ-LSLFTRD--------G----------VRLGTV--GEQDSWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred cCCcEEEEccCCCc-eEEEeec--------C----------eEEeec--cccceeEEEEEEccCCceEEEEEccCeeehh
Confidence 99999999999664 8888632 4 456555 2234579999999999999999999999999
Q ss_pred eCCC
Q 004255 459 VLSP 462 (765)
Q Consensus 459 dl~~ 462 (765)
++-.
T Consensus 291 Nl~f 294 (1081)
T KOG1538|consen 291 NLIF 294 (1081)
T ss_pred hhHH
Confidence 8853
No 227
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.19 E-value=0.0034 Score=68.18 Aligned_cols=85 Identities=19% Similarity=0.238 Sum_probs=59.8
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCCEEE
Q 004255 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIA 447 (765)
Q Consensus 369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a-~I~slaFSpDg~~La 447 (765)
.....+|..+|||++|..+-.--..|-+|.+.+. + .+|--+.+-.+.+ .-.+..|+++|++|+
T Consensus 243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~------~----------g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD------G----------GKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC------C----------CEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 3467899999999999887764457889998663 2 1232222111222 246899999999998
Q ss_pred EEeCC-CcEEEEeCCCCCCCccc
Q 004255 448 IVSSK-GTCHVFVLSPFGGDSGF 469 (765)
Q Consensus 448 s~S~d-gTVhIwdl~~~gg~~~~ 469 (765)
++..+ .+++||.+++..|..+.
T Consensus 307 aa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 307 AANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EEccCCCcEEEEEEcCCCceEEe
Confidence 88765 57999999988776543
No 228
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=9.8e-05 Score=80.02 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=50.4
Q ss_pred EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc------cccEEEEEEccCCCEE
Q 004255 373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT------SATIQDICFSHYSQWI 446 (765)
Q Consensus 373 saLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~------~a~I~slaFSpDg~~L 446 (765)
..+.|+|+|+.|.+--. |..--+||+.. ++++.|+..+. .+.|.+++|--|- -+
T Consensus 248 M~~~~~~~G~Q~msiRR-~~~P~~~D~~S------------------~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v 307 (609)
T KOG4227|consen 248 MGSLWSPSGNQFMSIRR-GKCPLYFDFIS------------------QRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TV 307 (609)
T ss_pred hheeeCCCCCeehhhhc-cCCCEEeeeec------------------ccceeEeccCCCCcceeeeeeeeeeeecce-ee
Confidence 45789999999987766 66667888854 23344432211 1358899998765 49
Q ss_pred EEEeCCCcEEEEeCCC
Q 004255 447 AIVSSKGTCHVFVLSP 462 (765)
Q Consensus 447 as~S~dgTVhIwdl~~ 462 (765)
++||++=.+|+|.|..
T Consensus 308 ~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 308 ATGSDHWGIHIWKLPR 323 (609)
T ss_pred eccCcccceEEEecCC
Confidence 9999999999999853
No 229
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.15 E-value=0.00043 Score=77.48 Aligned_cols=176 Identities=15% Similarity=0.112 Sum_probs=111.8
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEE-EEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVC-MVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~-sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (765)
+.|.|.|..+++.+.++.....+. .+.+++ +++.++. ++.|.++|+.+++.+.++.....| .
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~--------------~ 81 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP--------------R 81 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE--------------E
T ss_pred CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc--------------c
Confidence 689999999999999998766554 466776 6666654 678999999999988888753321 2
Q ss_pred eeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCC
Q 004255 249 PMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (765)
Q Consensus 249 ~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~ 326 (765)
.+++++ |||+.+.
T Consensus 82 ~i~~s~DG~~~~v~n----------------------------------------------------------------- 96 (369)
T PF02239_consen 82 GIAVSPDGKYVYVAN----------------------------------------------------------------- 96 (369)
T ss_dssp EEEE--TTTEEEEEE-----------------------------------------------------------------
T ss_pred eEEEcCCCCEEEEEe-----------------------------------------------------------------
Confidence 255544 4443332
Q ss_pred CCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC-------CCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-------TSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (765)
Q Consensus 327 ~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH-------~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi 399 (765)
..++.+.|+|..+.+.+.++... .+.+.+|..+|....++.+-.+...|-+-|.
T Consensus 97 -------------------~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 97 -------------------YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp -------------------EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred -------------------cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 13468899999999999888643 3468899999999977777776555655565
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCC
Q 004255 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFG 464 (765)
Q Consensus 400 ~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~-S~dgTVhIwdl~~~g 464 (765)
... .......+..| ....+..|+||++|+.++ ..++.+-++|..+.+
T Consensus 158 ~d~---------------~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 158 SDP---------------KNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp TTS---------------SCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred ccc---------------cccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccce
Confidence 331 00222333333 236789999999987654 567789999987643
No 230
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.12 E-value=0.00026 Score=81.14 Aligned_cols=94 Identities=18% Similarity=0.280 Sum_probs=59.6
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEE--eCCCCcccCCCCCCccccCCcceEEEEEe-
Q 004255 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF--RIMPSCMRSGSGNHKYDWNSSHVHLYKLH- 426 (765)
Q Consensus 350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVW--di~~~~~~~~sG~~~~~~~~s~~~l~~l~- 426 (765)
.|.++|+.+++. ..+..|.......+|+|||+.|+..+..+....|| |+.. | ....+.
T Consensus 287 ~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-------g-----------~~~~Lt~ 347 (448)
T PRK04792 287 EIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-------G-----------KVSRLTF 347 (448)
T ss_pred EEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-------C-----------CEEEEec
Confidence 577888887764 45555656667889999999998777644334555 5432 2 112221
Q ss_pred cccccccEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGG 465 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S~-dgTVhIwdl~~~gg 465 (765)
.+. .....+|||||++|+..+. ++..+||-++..++
T Consensus 348 ~g~---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 348 EGE---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred CCC---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 121 2345789999999988765 45667776655444
No 231
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.09 E-value=1.1e-06 Score=102.05 Aligned_cols=96 Identities=23% Similarity=0.374 Sum_probs=82.4
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (765)
Q Consensus 342 ~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~ 421 (765)
+.++..|..|+||...++.+++..+||.+.|+.++.+....++|+||. |.+||||.+.. | ..
T Consensus 205 Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~-D~vIrvWrl~~-------~----------~p 266 (1113)
T KOG0644|consen 205 IITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASN-DKVIRVWRLPD-------G----------AP 266 (1113)
T ss_pred EeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhccc-CceEEEEecCC-------C----------ch
Confidence 346778899999999999999999999999999999999999999999 67899999954 3 24
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
+-.| ||++. .|++|+|||-- +++.|||+++||..
T Consensus 267 vsvL-rghtg-avtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 267 VSVL-RGHTG-AVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred HHHH-hcccc-ceeeeccCccc----cCCCCCceEecccc
Confidence 4334 67664 59999999964 88999999999986
No 232
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.09 E-value=7.6e-06 Score=90.25 Aligned_cols=181 Identities=18% Similarity=0.319 Sum_probs=122.1
Q ss_pred CEEEEEECCCCeEEEEEeCC-CCEEEEEecCC--eEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 004255 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~--~LaV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (765)
+-++.-|+.+|++|..+.-. +.+..++-||. ++-+|-. ++|.+|....-+.+-.+.+|..| +.
T Consensus 231 G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~-------------V~ 297 (545)
T KOG1272|consen 231 GFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGP-------------VS 297 (545)
T ss_pred CceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCC-------------cc
Confidence 46888899999999998754 67888888994 3444443 47999998888887778888764 34
Q ss_pred eeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCC
Q 004255 249 PMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (765)
Q Consensus 249 ~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~ 326 (765)
.+|+.+ +|+|.+
T Consensus 298 siAv~~~G~YMaTt------------------------------------------------------------------ 311 (545)
T KOG1272|consen 298 SIAVDRGGRYMATT------------------------------------------------------------------ 311 (545)
T ss_pred eEEECCCCcEEeec------------------------------------------------------------------
Confidence 556643 344333
Q ss_pred CCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC
Q 004255 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 406 (765)
Q Consensus 327 ~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~ 406 (765)
+.|..|+|||+.....+.++.. ..+...++||..|.+ .+|. |..+.||.=.- +
T Consensus 312 -------------------G~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglL--A~~~-G~~v~iw~d~~----~ 364 (545)
T KOG1272|consen 312 -------------------GLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLL--ALSY-GDHVQIWKDAL----K 364 (545)
T ss_pred -------------------ccccceeEeeeccccccceeec-CCCccccccccccce--eeec-CCeeeeehhhh----c
Confidence 3466899999998776665544 457888999988743 3455 66799995321 1
Q ss_pred CCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccc
Q 004255 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471 (765)
Q Consensus 407 ~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~ 471 (765)
+++ .....|--+ ...+.|.++.|-|-...|.+|-..|.--| |-|..|++++.+
T Consensus 365 ~s~--------~~~~pYm~H--~~~~~V~~l~FcP~EDvLGIGH~~G~tsi--lVPGsGePN~Ds 417 (545)
T KOG1272|consen 365 GSG--------HGETPYMNH--RCGGPVEDLRFCPYEDVLGIGHAGGITSI--LVPGSGEPNYDS 417 (545)
T ss_pred CCC--------CCCcchhhh--ccCcccccceeccHHHeeeccccCCceeE--eccCCCCCCcch
Confidence 011 011222111 12347999999999999999988887666 456666665543
No 233
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.06 E-value=0.00068 Score=76.94 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=57.4
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt--~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
.|.+||+.+++. ..+..+........|+|||+.|+..+..+. .|.++|+.. |. ...+ .+ .
T Consensus 268 ~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-------g~--------~~~l-t~-~ 329 (430)
T PRK00178 268 EIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-------GR--------AERV-TF-V 329 (430)
T ss_pred eEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-------CC--------EEEe-ec-C
Confidence 577889887764 345556556677899999999887775443 355556532 21 1122 11 1
Q ss_pred ccccccEEEEEEccCCCEEEEEeCC-C--cEEEEeCCC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSSK-G--TCHVFVLSP 462 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~d-g--TVhIwdl~~ 462 (765)
+. .....+|||||++|+..+.+ + .|.+||+..
T Consensus 330 ~~---~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 330 GN---YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred CC---CccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence 21 13457899999999988754 3 355666654
No 234
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.05 E-value=9.2e-06 Score=90.99 Aligned_cols=83 Identities=19% Similarity=0.283 Sum_probs=69.7
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 004255 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (765)
Q Consensus 362 i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp 441 (765)
.+.|.+|++-|+||.|+.||.+||+||+ +.-+.|||.-. .+.++.+..|++ +.|.++.|=|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSD-D~r~ivWd~~~-----------------~KllhsI~TgHt-aNIFsvKFvP 103 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSD-DTRLIVWDPFE-----------------YKLLHSISTGHT-ANIFSVKFVP 103 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCC-cceEEeecchh-----------------cceeeeeecccc-cceeEEeeec
Confidence 4578999999999999999999999998 55689999732 146677777755 6799999988
Q ss_pred C--CCEEEEEeCCCcEEEEeCCCC
Q 004255 442 Y--SQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 442 D--g~~Las~S~dgTVhIwdl~~~ 463 (765)
. .+.|++|..|..|||||++..
T Consensus 104 ~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 104 YTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred cCCCeEEEeccCcceEEEEecccc
Confidence 5 478999999999999999863
No 235
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.03 E-value=9.4e-05 Score=78.78 Aligned_cols=185 Identities=19% Similarity=0.217 Sum_probs=120.8
Q ss_pred CCCeEEEEEecCcEEEEEccCCCcceEee---ee-c---cCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCC
Q 004255 73 VFKQVLLLGYQNGFQVLDVEDASNFNELV---SK-R---DGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLA 145 (765)
Q Consensus 73 ~~~~vL~~G~~~G~qVWdv~~~g~~~ell---s~-~---dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~ 145 (765)
.++.-|..||++.|+|||+.-.|...+.. .+ . .|-+.++++.|.. .+ ++|+ +.
T Consensus 168 ~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~----------~~--~~a~--gs------ 227 (406)
T KOG2919|consen 168 PDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMD----------SK--TLAV--GS------ 227 (406)
T ss_pred CCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCC----------Cc--ceee--ec------
Confidence 35788999999999999996666443332 22 1 2456677777631 12 5665 21
Q ss_pred CCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEe--CCeEEEEECCC
Q 004255 146 PGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL--ATQIYCFDALT 220 (765)
Q Consensus 146 ~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~--~~~I~iwD~~t 220 (765)
..+++-||.-..+..+..|-.+ +.|.-+++.+ +.|.+|. +++|-+||++.
T Consensus 228 -------------------------Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 228 -------------------------YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred -------------------------ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 1257888988888888888655 6899998876 6677665 46899999875
Q ss_pred Cc-eeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehh
Q 004255 221 LE-NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 299 (765)
Q Consensus 221 ~~-~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~ 299 (765)
-+ .++.|..|..- -| ..--+.+-|
T Consensus 283 ~~~pv~~L~rhv~~---------TN-QRI~FDld~--------------------------------------------- 307 (406)
T KOG2919|consen 283 SRDPVYALERHVGD---------TN-QRILFDLDP--------------------------------------------- 307 (406)
T ss_pred ccchhhhhhhhccC---------cc-ceEEEecCC---------------------------------------------
Confidence 42 22222211100 00 000011100
Q ss_pred hhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEEC
Q 004255 300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFKAHTSPISALCFD 378 (765)
Q Consensus 300 d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s-~~~i~~~~aH~~~IsaLaFS 378 (765)
. +. -+++++++|.|++||+.. +..+..+..|..-++.++|+
T Consensus 308 -----------------------~-----------~~----~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsln 349 (406)
T KOG2919|consen 308 -----------------------K-----------GE----ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLN 349 (406)
T ss_pred -----------------------C-----------Cc----eeeccCCCccEEEEecCCCCCcccccccccccccceecC
Confidence 0 00 123567899999999998 67788899999999999999
Q ss_pred CCCCEEEEEEcCCCEEEEEeC
Q 004255 379 PSGTLLVTASVYGNNINIFRI 399 (765)
Q Consensus 379 pdG~lLATaS~dGt~IrVWdi 399 (765)
|-=.+|||+|- . |+|-.
T Consensus 350 P~mpilatssG--q--r~f~~ 366 (406)
T KOG2919|consen 350 PIMPILATSSG--Q--RIFKY 366 (406)
T ss_pred cccceeeeccC--c--eeecC
Confidence 99888999874 3 67765
No 236
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.02 E-value=0.00078 Score=82.00 Aligned_cols=111 Identities=16% Similarity=0.159 Sum_probs=63.0
Q ss_pred CCeEEEEECCCCcEEEEec-cCCCCeEEEEECCC---CCEEEEEEc-CCCEEEEEeCCCCcccCCCCCCccccCCcce-E
Q 004255 348 AGIVVVKDFVTRAIISQFK-AHTSPISALCFDPS---GTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHV-H 421 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpd---G~lLATaS~-dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~-~ 421 (765)
.|.+.+||++=+..+.... +|..+|..|+.+|- ....++++. --+-+-+|++.... +. ..-|.+... .
T Consensus 1216 ~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~-----~~-~vl~~s~~~p~ 1289 (1431)
T KOG1240|consen 1216 RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL-----RQ-TVLWASDGAPI 1289 (1431)
T ss_pred CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc-----ce-EEEEcCCCCcc
Confidence 4678899998877777654 44578888877763 345665555 34568999986621 10 000100000 0
Q ss_pred E-EEEec-----ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 422 L-YKLHR-----GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 422 l-~~l~r-----G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
+ +.+-. -...+ ...+++-.-+.++.+|+.|..|+.||......
T Consensus 1290 ls~~~Ps~~~~kp~~~~-~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1290 LSYALPSNDARKPDSLA-GISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred hhhhcccccCCCCCccc-ceeeecccCCceeeecCCccceeeccCCCccc
Confidence 0 00000 00011 22344555567899999999999999876443
No 237
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.00028 Score=76.89 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=50.4
Q ss_pred ccCCCCeEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255 344 DMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~-~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~ 401 (765)
.+...|.+..||+..++.... |++-++.|.+|..+|.+.+||+|+- |..+||||+.+
T Consensus 264 ~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GL-DRyvRIhD~kt 321 (412)
T KOG3881|consen 264 TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGL-DRYVRIHDIKT 321 (412)
T ss_pred EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecc-ceeEEEeeccc
Confidence 345678889999999998777 8899999999999999999999999 56799999975
No 238
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.99 E-value=0.00013 Score=87.19 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=81.2
Q ss_pred ccCCCCeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 344 DMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~-~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
+.+.|.++++|++.+.+... +.-+|+..|..++|.|+ +++|+++| -+.|+|+.. | ..+
T Consensus 192 s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~ged-ctcrvW~~~--------~----------~~l 250 (967)
T KOG0974|consen 192 SVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGED-CTCRVWGVN--------G----------TQL 250 (967)
T ss_pred EEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccc-eEEEEEecc--------c----------cee
Confidence 34567899999999988665 66799999999999998 99999995 569999763 2 122
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcc
Q 004255 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 468 (765)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~ 468 (765)
-++ +++....|+.++..++.-++.++..|+++++|++...+-+..
T Consensus 251 ~~y-~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~ 295 (967)
T KOG0974|consen 251 EVY-DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGH 295 (967)
T ss_pred hhh-hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccccc
Confidence 222 233334599999999999999999999999999987665543
No 239
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.96 E-value=0.0092 Score=68.01 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=36.3
Q ss_pred EEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeC----CeEEEEECCCCc
Q 004255 174 AVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA----TQIYCFDALTLE 222 (765)
Q Consensus 174 tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~----~~I~iwD~~t~~ 222 (765)
.|.++|+.+|+......+.+.+...+++| +.|+.... .+|+++|+.+++
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred EEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 79999999998766666777666677776 56665432 369999998775
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.93 E-value=3.4e-05 Score=92.13 Aligned_cols=98 Identities=20% Similarity=0.217 Sum_probs=77.4
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
+.+..-|.|.+|+....+....+.+|.+.|.++.|+-||+++||+|+ |.+||+|++.+... .-
T Consensus 149 ~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd-DRsiRlW~i~s~~~----------------~~ 211 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD-DRSIRLWPIDSREV----------------LG 211 (967)
T ss_pred EeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec-Ccceeeeecccccc----------------cC
Confidence 34556789999998854444468999999999999999999999999 56799999965210 11
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
... -| |.+.|+.++|.|. .|++++.|-|.++|+.+
T Consensus 212 ~~~-fg-HsaRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 212 CTG-FG-HSARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred ccc-cc-ccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 111 13 4578999999998 99999999999999654
No 241
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.92 E-value=0.00087 Score=72.15 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=53.7
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---cc-----ccccc---EEEE
Q 004255 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RG-----ITSAT---IQDI 437 (765)
Q Consensus 369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~---rG-----~~~a~---I~sl 437 (765)
-+.|+.+.|+++|++++|-+- -+++|||+.-. . .....|.++ |- ..+.. =..+
T Consensus 272 IsSISDvKFs~sGryilsRDy--ltvk~wD~nme------~--------~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 272 ISSISDVKFSHSGRYILSRDY--LTVKLWDLNME------A--------KPVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred hhhhhceEEccCCcEEEEecc--ceeEEEecccc------C--------CcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 457889999999999998765 36999999321 1 001222221 10 00111 2468
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 438 CFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 438 aFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
+||-|+.++++||-...+|+|++..
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred EEcCCcceEecccccceEEEecCCC
Confidence 9999999999999999999999654
No 242
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.90 E-value=5.8e-05 Score=81.37 Aligned_cols=77 Identities=19% Similarity=0.350 Sum_probs=61.9
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 004255 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (765)
Q Consensus 366 ~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~ 445 (765)
++| .+|++|.+++||+.|+|||-++..|+|||..+ |. ..++.. +|. ..+.-+.|||||.+
T Consensus 193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-------g~--------~~pL~~--~gl--gg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-------GQ--------KIPLIP--KGL--GGFSLLKWSPDGDV 252 (445)
T ss_pred CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-------CC--------cccccc--cCC--CceeeEEEcCCCCE
Confidence 456 79999999999999999999999999999865 21 133332 222 24778999999999
Q ss_pred EEEEeCCCcEEEEeCCC
Q 004255 446 IAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 446 Las~S~dgTVhIwdl~~ 462 (765)
|.+++-|++.+||..+.
T Consensus 253 lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQ 269 (445)
T ss_pred EEEecccceeeeehhcc
Confidence 99999999999997654
No 243
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.90 E-value=0.00013 Score=81.52 Aligned_cols=103 Identities=19% Similarity=0.310 Sum_probs=75.2
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l 425 (765)
..+|.|.|.|..+.+.+..|.....+-..++|+|||++|..++.|| .|.++|+.. + +.+.++
T Consensus 13 ~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg-~vsviD~~~-------~----------~~v~~i 74 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDG-TVSVIDLAT-------G----------KVVATI 74 (369)
T ss_dssp GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTS-EEEEEETTS-------S----------SEEEEE
T ss_pred cCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCC-eEEEEECCc-------c----------cEEEEE
Confidence 4578999999999999999987655545688999999999999866 599999965 2 466777
Q ss_pred ecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCccc
Q 004255 426 HRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGDSGF 469 (765)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~gg~~~~ 469 (765)
+-|. .-.++++|+||++|+++. ..+++.|+|..+..-...+
T Consensus 75 ~~G~---~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 75 KVGG---NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp E-SS---EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred ecCC---CcceEEEcCCCCEEEEEecCCCceeEeccccccceeec
Confidence 7663 357899999999998776 6899999998875444333
No 244
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.87 E-value=0.021 Score=63.13 Aligned_cols=104 Identities=23% Similarity=0.379 Sum_probs=64.3
Q ss_pred eEEEEECCCCc--E--EEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 004255 350 IVVVKDFVTRA--I--ISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (765)
Q Consensus 350 ~V~IwDl~s~~--~--i~~~~a-H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~ 424 (765)
.|.+|++.... . ...+.. .-..-..|+|+|||+++....+....|.+|++.+. .| ....+..
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-----~g--------~~~~~~~ 233 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-----DG--------SLTEIQT 233 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-----TT--------EEEEEEE
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-----CC--------ceeEEEE
Confidence 57777775543 2 222222 22334789999999999999888889999998621 02 1122222
Q ss_pred Ee---cccccc-cEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCC
Q 004255 425 LH---RGITSA-TIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGD 466 (765)
Q Consensus 425 l~---rG~~~a-~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~gg~ 466 (765)
.. .+.... .-..|++||||++|.++. ..++|.+|+++...+.
T Consensus 234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT 280 (345)
T ss_dssp EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred eeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence 21 121111 467899999999988776 4678999999765443
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=0.00083 Score=76.15 Aligned_cols=128 Identities=23% Similarity=0.272 Sum_probs=92.0
Q ss_pred CCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeC---CeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 004255 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA---TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~---~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~ 246 (765)
-+++.++++...+++-.|.-.++|+++.+|+ +-++|+.. .++.|||++ +..++.+.+-|
T Consensus 250 Eq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~egp--------------- 313 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEGP--------------- 313 (566)
T ss_pred cceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCCC---------------
Confidence 4799999999777887888889999999998 55666553 469999975 33444433211
Q ss_pred cceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCC
Q 004255 247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (765)
Q Consensus 247 ~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~ 324 (765)
.+.+-++| ++|+.++-
T Consensus 314 RN~~~fnp~g~ii~lAGF-------------------------------------------------------------- 331 (566)
T KOG2315|consen 314 RNTAFFNPHGNIILLAGF-------------------------------------------------------------- 331 (566)
T ss_pred ccceEECCCCCEEEEeec--------------------------------------------------------------
Confidence 23344544 44444431
Q ss_pred CCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-----CCEEEEEeC
Q 004255 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-----GNNINIFRI 399 (765)
Q Consensus 325 s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d-----Gt~IrVWdi 399 (765)
+.-.|.+-|||+.+.+.+..+.+-.. +-..|+|||.+++||..- ++.|+||+.
T Consensus 332 --------------------GNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 332 --------------------GNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred --------------------CCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 12357899999999999999987654 457899999999999763 445999997
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.84 E-value=0.0013 Score=75.10 Aligned_cols=76 Identities=21% Similarity=0.152 Sum_probs=46.6
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S 450 (765)
.....+|||||+.||..+..+...+||.+... ..+ .....+..+ ...+.+.+|||||++|+..+
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~----~~g----------~~~~~lt~~--~~~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID----PEG----------QSPRLLTKK--YRNSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCCceEEEEECc----ccc----------cceEEeccC--CCCccceeECCCCCEEEEEE
Confidence 34567999999998887754444567754210 001 112222211 12456789999999999876
Q ss_pred CC---CcEEEEeCCC
Q 004255 451 SK---GTCHVFVLSP 462 (765)
Q Consensus 451 ~d---gTVhIwdl~~ 462 (765)
.+ ..|++||+..
T Consensus 346 ~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 346 VIKGVRQICVYDLAT 360 (428)
T ss_pred cCCCCcEEEEEECCC
Confidence 54 3577787754
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=0.0014 Score=74.52 Aligned_cols=206 Identities=15% Similarity=0.164 Sum_probs=126.2
Q ss_pred EEeCCCCEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecC
Q 004255 188 VLRFRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN 262 (765)
Q Consensus 188 tL~~~s~V~sV~~s~---~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~ 262 (765)
.++.+..-.++..+. .++++|....||-+++..|+-+..+.+... ..+.+.+.+ -+||+++.
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~-------------~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG-------------ELNVVSINEEHGLLACGTE 195 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccc-------------cceeeeecCccceEEeccc
Confidence 444444445666554 788888888999999999987766654322 235666766 67888875
Q ss_pred CceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCC----CCCCccCCCccccc
Q 004255 263 TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG----SSSPVSPNSVWKVG 338 (765)
Q Consensus 263 ~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~----s~~~~s~s~~~~~~ 338 (765)
+..+ --||......+ +.. .++.. +. -.|.. ++.++.|+. +
T Consensus 196 ~g~V-----EfwDpR~ksrv------------~~l------~~~~~----v~-----s~pg~~~~~svTal~F~d----~ 239 (703)
T KOG2321|consen 196 DGVV-----EFWDPRDKSRV------------GTL------DAASS----VN-----SHPGGDAAPSVTALKFRD----D 239 (703)
T ss_pred CceE-----EEecchhhhhh------------eee------ecccc----cC-----CCccccccCcceEEEecC----C
Confidence 5321 13444432111 000 00000 00 01111 112233322 2
Q ss_pred cccccccCCCCeEEEEECCCCcEEEEeccC--CCCeEEEEECCC--CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccc
Q 004255 339 RHAGADMDNAGIVVVKDFVTRAIISQFKAH--TSPISALCFDPS--GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 414 (765)
Q Consensus 339 ~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH--~~~IsaLaFSpd--G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~ 414 (765)
++..+.|..+|.|.|||+.+.+++. ++.| ..||..+.|.+. +..|+|+. -..++|||-.+ |
T Consensus 240 gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~pi~~l~~~~~~~q~~v~S~D--k~~~kiWd~~~-------G----- 304 (703)
T KOG2321|consen 240 GLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYELPIKKLDWQDTDQQNKVVSMD--KRILKIWDECT-------G----- 304 (703)
T ss_pred ceeEEeeccCCcEEEEEcccCCcee-ecccCCccceeeecccccCCCceEEecc--hHHhhhccccc-------C-----
Confidence 3445667889999999999987654 3444 568999999876 45666654 46799999644 3
Q ss_pred cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 415 ~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
.....+ .....|.++||=|++-++.++-.+..+|.|=|...|.
T Consensus 305 -----k~~asi---Ept~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 305 -----KPMASI---EPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGP 347 (703)
T ss_pred -----Cceeec---cccCCcCceeeecCCceEEEecCCCcceeEEccccCC
Confidence 111111 1234589999999999999999999999998876554
No 248
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.70 E-value=0.00035 Score=77.92 Aligned_cols=297 Identities=16% Similarity=0.143 Sum_probs=162.0
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (765)
Q Consensus 51 ~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~s 129 (765)
..+.++.-|.-+.|++ .+.+|++|.++- +-|||.........-.++|...|...+|+| |++.
T Consensus 137 kL~~H~GcVntV~FN~-------~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP----------~s~d 199 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQ-------RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIP----------FSGD 199 (559)
T ss_pred cccCCCCccceeeecc-------cCceeeccCccceEEeehhhccCcccccccccccchhhhhccC----------CCCC
Confidence 4677888888888987 266999999885 899999765555666778888898889998 6777
Q ss_pred CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC-CCeEEEEE---eCCCCEEEEEecC---
Q 004255 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ-SHCYEHVL---RFRSSVCMVRCSP--- 202 (765)
Q Consensus 130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlk-tg~~v~tL---~~~s~V~sV~~s~--- 202 (765)
++++ ..+. | +.|++=.+- ++.+..+- +++++|.-++.-|
T Consensus 200 ~ti~-~~s~-------------------d--------------gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp 245 (559)
T KOG1334|consen 200 RTIV-TSSR-------------------D--------------GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP 245 (559)
T ss_pred cCce-eccc-------------------c--------------CceeeeeeccccceecceecccccCccceeeecCCCC
Confidence 7763 2111 1 234443332 33333222 4567787777544
Q ss_pred CeEE-EEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCcee-cCCccccCCCC
Q 004255 203 RIVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLL-SNSGRLSPQNL 277 (765)
Q Consensus 203 ~~La-V~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~-~~~G~~s~~~l 277 (765)
+-+. .|-+..+.=+|+.+......+.+-.+... ..+....+|+.| ..+|.++.+-+. .-.++. .+
T Consensus 246 ~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~-------~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~-~~-- 315 (559)
T KOG1334|consen 246 KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK-------ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRR-ID-- 315 (559)
T ss_pred CcccccccccceeeeeeccCCccceeeeeccCCc-------cceeeeeEecCCCCccccccCChhhhhhhhcccc-hh--
Confidence 4444 45555688889887653333332111000 012344566666 456666554211 000000 00
Q ss_pred CCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCC-CCCC-C-CccCCCccccccccccccCCCCeEEEE
Q 004255 278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP-DGSS-S-PVSPNSVWKVGRHAGADMDNAGIVVVK 354 (765)
Q Consensus 278 t~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p-~~s~-~-~~s~s~~~~~~~~~~~~~~~dG~V~Iw 354 (765)
+.-..|+ +.++|..-+- +..+ . -+..+ ..+.-+...-.|-.|.++
T Consensus 316 -------------------------~e~~n~~---~~~f~p~hl~~d~~v~ITgl~Ys----h~~sElLaSYnDe~IYLF 363 (559)
T KOG1334|consen 316 -------------------------KEENNGV---LDKFCPHHLVEDDPVNITGLVYS----HDGSELLASYNDEDIYLF 363 (559)
T ss_pred -------------------------hccccch---hhhcCCccccccCcccceeEEec----CCccceeeeecccceEEe
Confidence 0000010 0111111000 0000 0 00000 000000112234455555
Q ss_pred ECCC--C----------cEEEE-eccCCC--CeEEEEE-CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 004255 355 DFVT--R----------AIISQ-FKAHTS--PISALCF-DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (765)
Q Consensus 355 Dl~s--~----------~~i~~-~~aH~~--~IsaLaF-SpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s 418 (765)
.-.. | ..+.. +++|.. .|-.+-| -|...++++||+-|+ |-||+-.+ |
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGh-IFiW~K~t-------~--------- 426 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGH-IFIWDKKT-------G--------- 426 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccce-EEEEecch-------h---------
Confidence 3211 1 22333 788864 3556655 688999999999776 99999754 2
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 419 ~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl 460 (765)
+++. +..|.. ..|.||-=+|---.||+++-|.-|+||.-
T Consensus 427 -eii~-~MegDr-~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 427 -EIIR-FMEGDR-HVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred -HHHH-Hhhccc-ceEeccCCCCCCchhhccCCccceeeecC
Confidence 2332 333433 37999999999999999999999999964
No 249
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.69 E-value=0.00014 Score=53.63 Aligned_cols=37 Identities=30% Similarity=0.420 Sum_probs=31.5
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (765)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwd 459 (765)
++..++ | +...|++|+|+|++++|++++.|++|+|||
T Consensus 3 ~~~~~~-~-h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFR-G-HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEE-S-SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEc-C-CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 455664 4 345799999999999999999999999997
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.0042 Score=70.97 Aligned_cols=97 Identities=21% Similarity=0.368 Sum_probs=77.4
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
+.+.|+.|..|+...++.++.+++-...+.+++.+|||..|++||. .|+|||+.+ + ..+.
T Consensus 119 S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~---~ik~~~~~~-------k----------evv~ 178 (541)
T KOG4547|consen 119 SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR---QIKVLDIET-------K----------EVVI 178 (541)
T ss_pred ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc---eEEEEEccC-------c----------eEEE
Confidence 4567899999999999999999999999999999999999999986 699999976 2 3444
Q ss_pred EEecccccccEEEEEEccC-----CCEEEEE-eCCCcEEEEeCCC
Q 004255 424 KLHRGITSATIQDICFSHY-----SQWIAIV-SSKGTCHVFVLSP 462 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpD-----g~~Las~-S~dgTVhIwdl~~ 462 (765)
+| .| |...|.+++|--+ |.++.++ -.+.-+-+|-+..
T Consensus 179 ~f-tg-h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 179 TF-TG-HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Ee-cC-CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 44 45 4568999999888 6665544 3444577887765
No 251
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.62 E-value=0.0014 Score=70.71 Aligned_cols=220 Identities=15% Similarity=0.217 Sum_probs=131.2
Q ss_pred CCCEEEEE-ECCCCeEEEEEeC--CCCEEEEEecC--CeEEEEeCC-eEEEEECC-CCceeEEEEecCCcccCCCCcccc
Q 004255 171 SPTAVRFY-SFQSHCYEHVLRF--RSSVCMVRCSP--RIVAVGLAT-QIYCFDAL-TLENKFSVLTYPVPQLAGQGAVGI 243 (765)
Q Consensus 171 ~p~tV~lW-dlktg~~v~tL~~--~s~V~sV~~s~--~~LaV~~~~-~I~iwD~~-t~~~l~tl~t~p~p~~~~~~~~~~ 243 (765)
.+++|||| ....+++-..+.+ ++++.++.++. ++|.+++++ .+.=|-+. +.+....++.+..- |+.
T Consensus 44 ~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h----~~~--- 116 (404)
T KOG1409|consen 44 EDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH----QAR--- 116 (404)
T ss_pred ccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhh----hcc---
Confidence 35899999 5567888877764 67888888876 788899875 56666532 23222222222221 000
Q ss_pred ccccceeEEccceEEEecCCc-eecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCC
Q 004255 244 NVGYGPMAVGPRWLAYASNTL-LLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 322 (765)
Q Consensus 244 ~~~~~~~Alspr~LAyas~~~-~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p 322 (765)
+..-.+++.+.|+...+.+. +.++. .. +| +.|.+|.-+-.+
T Consensus 117 -v~~~if~~~~e~V~s~~~dk~~~~hc-------~e-----------~~-------------------~~lg~Y~~~~~~ 158 (404)
T KOG1409|consen 117 -VSAIVFSLTHEWVLSTGKDKQFAWHC-------TE-----------SG-------------------NRLGGYNFETPA 158 (404)
T ss_pred -eeeEEecCCceeEEEeccccceEEEe-------ec-----------cC-------------------CcccceEeeccC
Confidence 01123556667887776542 22211 00 01 111222211000
Q ss_pred CCCCCCccCCCccccccccccccCCCCeEEEE--ECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 004255 323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVK--DFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (765)
Q Consensus 323 ~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~Iw--Dl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~ 400 (765)
. +.... .. -...++..|.|.+- +...-..+.++.+|..+|.+++|+|...+|.+++. ++.+-+||+-
T Consensus 159 t----~~~~d----~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~-d~~vi~wdig 227 (404)
T KOG1409|consen 159 S----ALQFD----AL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS-DHSVIMWDIG 227 (404)
T ss_pred C----CCcee----eE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc-cCceEEEecc
Confidence 0 00000 00 01134455555443 33456788999999999999999999999999999 5669999993
Q ss_pred CCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255 401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 401 ~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g 464 (765)
- ..| ..+++.+ ++..|+.++.-+--+.|.+++.||-|-+|+++-..
T Consensus 228 g-----~~g-----------~~~el~g--h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 228 G-----RKG-----------TAYELQG--HNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred C-----Ccc-----------eeeeecc--chhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 1 112 3466653 23457777777777899999999999999998643
No 252
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.0026 Score=72.59 Aligned_cols=53 Identities=21% Similarity=0.449 Sum_probs=45.0
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCC-----CCEEEEEEcCCCEEEEEeCC
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-----GTLLVTASVYGNNINIFRIM 400 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpd-----G~lLATaS~dGt~IrVWdi~ 400 (765)
.+.|++||+++++.+.+|.+|.++|++++|--+ |.++.+...-+..|.+|-+.
T Consensus 163 s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 163 SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 468999999999999999999999999999887 77777665546678888763
No 253
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.57 E-value=0.00097 Score=71.39 Aligned_cols=109 Identities=15% Similarity=0.221 Sum_probs=61.8
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCE--EEE-----EeCCCCcccCCCCCCccccCCcc
Q 004255 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN--INI-----FRIMPSCMRSGSGNHKYDWNSSH 419 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~--IrV-----Wdi~~~~~~~~sG~~~~~~~~s~ 419 (765)
.+-.|.||.+.+.+... ++--+..+-.++|+|||++.|-++..|.. +.| |.+..++..+....+...|++..
T Consensus 112 F~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg 190 (447)
T KOG4497|consen 112 FDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG 190 (447)
T ss_pred ceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC
Confidence 45578889888766432 33233456778999999998888763210 001 11100000000000111222111
Q ss_pred -----------eEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255 420 -----------VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (765)
Q Consensus 420 -----------~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwd 459 (765)
-++|...||. .|..++|||-+++||+|+.|+.++|-+
T Consensus 191 ~~laVwd~~Leykv~aYe~~l---G~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 191 NWLAVWDNVLEYKVYAYERGL---GLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred cEEEEecchhhheeeeeeecc---ceeEEEeccccceEEeeccchhhhhhc
Confidence 2344455553 378899999999999999999998844
No 254
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.56 E-value=0.05 Score=68.94 Aligned_cols=72 Identities=10% Similarity=0.104 Sum_probs=51.7
Q ss_pred EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-ccc-----------ccccEEEEEEc
Q 004255 373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGI-----------TSATIQDICFS 440 (765)
Q Consensus 373 saLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~-rG~-----------~~a~I~slaFS 440 (765)
..|+|+++|.++++-+. ++.|++||.... .+..+. .|. .-.....|+++
T Consensus 807 ~Gvavd~dG~LYVADs~-N~rIrviD~~tg------------------~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd 867 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSY-NHKIKKLDPATK------------------RVTTLAGTGKAGFKDGKALKAQLSEPAGLALG 867 (1057)
T ss_pred ceeeEeCCCcEEEEECC-CCEEEEEECCCC------------------eEEEEeccCCcCCCCCcccccccCCceEEEEe
Confidence 47899999997776665 567999998542 111111 010 00136789999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCC
Q 004255 441 HYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 441 pDg~~Las~S~dgTVhIwdl~~~ 463 (765)
+||+.+++-+.+++|++||+...
T Consensus 868 ~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 868 ENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CCCCEEEEECCCCEEEEEECCCC
Confidence 99999999999999999999764
No 255
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.51 E-value=0.05 Score=61.12 Aligned_cols=162 Identities=17% Similarity=0.147 Sum_probs=97.5
Q ss_pred cccccceecccCCCCCCCcEEEEEEe-eccCC--C--------------CCCCeEEEEEecCcEEEEEccCCCcceEeee
Q 004255 40 AGASVAASISNASEDLKDQVTWAGFD-RLEYG--P--------------SVFKQVLLLGYQNGFQVLDVEDASNFNELVS 102 (765)
Q Consensus 40 ~~~s~~~~~~~~~~~~~~~v~w~~fd-~l~~~--~--------------~~~~~vL~~G~~~G~qVWdv~~~g~~~ells 102 (765)
+.-+.||.|+. .+.++|.+.=.-.+ .++-. . ...+..+++-+++..-|.+... +-+ +--
T Consensus 281 IvFq~~GdIyl-ydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~-~~~--iqv 356 (668)
T COG4946 281 IVFQNAGDIYL-YDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWD-GYS--IQV 356 (668)
T ss_pred EEEecCCcEEE-eCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCC-Cee--EEc
Confidence 44578999998 77777776544343 11100 0 0235667777676644444321 112 222
Q ss_pred eccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC
Q 004255 103 KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS 182 (765)
Q Consensus 103 ~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlkt 182 (765)
.+.+.|+..+++-+|. -+++ +. ++| -.|-+||..+
T Consensus 357 ~~~~~VrY~r~~~~~e-------------~~vi--gt-----------------~dg-------------D~l~iyd~~~ 391 (668)
T COG4946 357 GKKGGVRYRRIQVDPE-------------GDVI--GT-----------------NDG-------------DKLGIYDKDG 391 (668)
T ss_pred CCCCceEEEEEccCCc-------------ceEE--ec-----------------cCC-------------ceEEEEecCC
Confidence 4556799888875441 1222 21 111 2799999999
Q ss_pred CeEEEEEeCCCCEEEEEecC--CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceE
Q 004255 183 HCYEHVLRFRSSVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWL 257 (765)
Q Consensus 183 g~~v~tL~~~s~V~sV~~s~--~~LaV~~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~L 257 (765)
++.-+..+--+.|.+|..++ +.++++.+. +|.+.|+.|+.. +.+.-+.- + -..-++++| ||+
T Consensus 392 ~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv-~~idkS~~-----------~-lItdf~~~~nsr~i 458 (668)
T COG4946 392 GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV-RLIDKSEY-----------G-LITDFDWHPNSRWI 458 (668)
T ss_pred ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-eEeccccc-----------c-eeEEEEEcCCceeE
Confidence 88666666668999999887 678888765 688889999863 22321111 0 123478888 999
Q ss_pred EEecCC
Q 004255 258 AYASNT 263 (765)
Q Consensus 258 Ayas~~ 263 (765)
||+-..
T Consensus 459 AYafP~ 464 (668)
T COG4946 459 AYAFPE 464 (668)
T ss_pred EEecCc
Confidence 998544
No 256
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.50 E-value=0.16 Score=63.59 Aligned_cols=97 Identities=14% Similarity=0.230 Sum_probs=63.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC--CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d--Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
..++||+-+ |....+-..-.+-=.+|+|-|+|+++|+.-.. ...|..|.- | |- .+--+.++
T Consensus 237 R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr------N--GL--------rhgeF~l~ 299 (928)
T PF04762_consen 237 RVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER------N--GL--------RHGEFTLR 299 (928)
T ss_pred eEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec------C--Cc--------EeeeEecC
Confidence 589999965 55433333222223468999999999998762 234555652 2 31 02224554
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
.......|..|+|++|+..||+.-.|. |.+|-...|
T Consensus 300 ~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 300 FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 322334699999999999999987655 999998876
No 257
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.50 E-value=0.0015 Score=79.70 Aligned_cols=96 Identities=14% Similarity=0.314 Sum_probs=71.0
Q ss_pred EECCCCcEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 004255 354 KDFVTRAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 432 (765)
Q Consensus 354 wDl~s~~~i~~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a 432 (765)
|.. .|..++++..|...|..++.++. +.+++|||.||+ |||||+.... +.. + .....+.|.. ...
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGt-VKvW~~~k~~-~~~-~------s~rS~ltys~----~~s 1099 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGT-VKVWNLRKLE-GEG-G------SARSELTYSP----EGS 1099 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCce-EEEeeehhhh-cCc-c------eeeeeEEEec----cCC
Confidence 443 36788999999999999888765 599999999775 9999986421 110 1 0011233332 224
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 433 ~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
.+.++.+-+.|..+|+++.||.|++.+++.+
T Consensus 1100 r~~~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1100 RVEKVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred ceEEEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence 5888999999999999999999999999986
No 258
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.44 E-value=0.003 Score=71.94 Aligned_cols=115 Identities=14% Similarity=0.205 Sum_probs=81.0
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
.-.|.=+++..|+-+.-|.-..++|+++..++--.+||+|..+| .+..||-+.- +.-| ..+... .+-. +-
T Consensus 154 g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g-~VEfwDpR~k---srv~--~l~~~~---~v~s-~p 223 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG-VVEFWDPRDK---SRVG--TLDAAS---SVNS-HP 223 (703)
T ss_pred CcceEEEEccccccccccccccccceeeeecCccceEEecccCc-eEEEecchhh---hhhe--eeeccc---ccCC-Cc
Confidence 34677789999998888888889999999999999999999866 5999997541 1001 000000 0000 01
Q ss_pred cccc-ccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255 428 GITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 428 G~~~-a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
|... ..|++|.|+.||-.+++|+.+|.|.||||.... +.-+..|.
T Consensus 224 g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~-pl~~kdh~ 269 (703)
T KOG2321|consen 224 GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK-PLLVKDHG 269 (703)
T ss_pred cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC-ceeecccC
Confidence 2122 259999999999999999999999999998743 33345554
No 259
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.43 E-value=0.14 Score=52.40 Aligned_cols=94 Identities=18% Similarity=0.172 Sum_probs=61.2
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCC----------e-EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 004255 345 MDNAGIVVVKDFVTRAIISQFKAHTSP----------I-SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (765)
Q Consensus 345 ~~~dG~V~IwDl~s~~~i~~~~aH~~~----------I-saLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~ 413 (765)
+..+|.|..+|+.+|+.+-....+..+ + ..+.++ +| .+..++.+|..+.+ |+.+ |
T Consensus 128 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~t-------g---- 193 (238)
T PF13360_consen 128 GTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLAT-------G---- 193 (238)
T ss_dssp EETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTT-------T----
T ss_pred EeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCC-------C----
Confidence 344899999999999998887765433 1 233333 55 55555555766777 9865 3
Q ss_pred ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 414 ~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
..+++.. .. .+.. ....++..|++++.+++++.||+.+.
T Consensus 194 ------~~~w~~~--~~--~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 194 ------EKLWSKP--IS--GIYS-LPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp ------EEEEEEC--SS---ECE-CEECCCTEEEEEETTTEEEEEETTTT
T ss_pred ------CEEEEec--CC--CccC-CceeeCCEEEEEeCCCEEEEEECCCC
Confidence 3444322 11 1222 25678888888889999999999863
No 260
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.42 E-value=0.0016 Score=73.51 Aligned_cols=104 Identities=13% Similarity=0.184 Sum_probs=74.5
Q ss_pred cccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccc
Q 004255 335 WKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 414 (765)
Q Consensus 335 ~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~ 414 (765)
|.+.+..+.+.+.||.|+||.- +|-...++.....+|.|++|.|+...++-+-. |+ +.|=.+.+.
T Consensus 112 W~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h-~~IKpL~~n------------ 176 (737)
T KOG1524|consen 112 WSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GH-ISIKPLAAN------------ 176 (737)
T ss_pred cCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC-Ce-EEEeecccc------------
Confidence 3333444567889999999984 34333444455679999999999887766654 43 656555431
Q ss_pred cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255 415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 415 ~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl 460 (765)
..+.+.+ .|.+.|.++.|++.+..|++|+.|-..+|||-
T Consensus 177 -----~k~i~Wk--AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 177 -----SKIIRWR--AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA 215 (737)
T ss_pred -----cceeEEe--ccCcEEEEeecCccccceeecCCceeEEeecc
Confidence 2334443 24467999999999999999999999999985
No 261
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.33 E-value=0.0056 Score=72.95 Aligned_cols=185 Identities=15% Similarity=0.175 Sum_probs=129.3
Q ss_pred CCEEEEEECCCCeEEEEEeCCC-CEEEEEecCCeEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 004255 172 PTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSPRIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 249 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~s-~V~sV~~s~~~LaV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~ 249 (765)
+..+..+|+++.++.+.....+ .|.=++-|.+.|.+|.. ++|.+-|..+.+..+++.+|..- ..-
T Consensus 156 Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s-------------iSD 222 (1118)
T KOG1275|consen 156 QEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS-------------ISD 222 (1118)
T ss_pred hhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccc-------------eee
Confidence 3578889999999998888765 78888999888888764 57999999999999999988761 223
Q ss_pred eEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCc
Q 004255 250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV 329 (765)
Q Consensus 250 ~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~ 329 (765)
|.+..+.|+..+... |. |
T Consensus 223 fDv~GNlLitCG~S~------R~-------------------------------------------~------------- 240 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSM------RR-------------------------------------------Y------------- 240 (1118)
T ss_pred eeccCCeEEEeeccc------cc-------------------------------------------c-------------
Confidence 455556666655320 00 0
Q ss_pred cCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 004255 330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGS 408 (765)
Q Consensus 330 s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~s 408 (765)
.-..|-.|+|||+++.+.+.-+.-|.+| ..+.|.|. -+.||.+|..|. ..+-|....
T Consensus 241 --------------~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq-~q~vd~~~l------ 298 (1118)
T KOG1275|consen 241 --------------NLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ-FQFVDTATL------ 298 (1118)
T ss_pred --------------cccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc-eeecccccc------
Confidence 0124668999999999888877777777 67889986 456777777676 666663221
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 409 G~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
+ .....++... ....-|..+.||+.|+.||.+..+|.||+|.-.+
T Consensus 299 s-------NP~~~~~~v~--p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 299 S-------NPPAGVKMVN--PNGSGISAFDISSNGDALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred C-------CCccceeEEc--cCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence 0 0001111111 1112388999999999999999999999998443
No 262
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.32 E-value=0.00069 Score=85.00 Aligned_cols=88 Identities=20% Similarity=0.332 Sum_probs=65.3
Q ss_pred CCCeEEEEECCC--C-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 347 NAGIVVVKDFVT--R-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 347 ~dG~V~IwDl~s--~-~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
.++.+.+||..- + ..+. .+|.+.+++++|-|.-++|.||+.+|. |.|||++.. +..+
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~rqr-----------------ql~h 2372 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIRQR-----------------QLRH 2372 (2439)
T ss_pred CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCc-EEEeehHHH-----------------HHHH
Confidence 356788898542 2 2344 899999999999999999999999886 999999541 1111
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~ 466 (765)
.+ +. +. .-.++++++.+|+++||+++.++-.
T Consensus 2373 ~~---------~~--~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2373 TF---------QA--LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred Hh---------hh--hh-hhheeeccCcccceEEEEccccchh
Confidence 11 11 23 4468999999999999999987543
No 263
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.32 E-value=0.0014 Score=70.23 Aligned_cols=89 Identities=17% Similarity=0.285 Sum_probs=69.6
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 004255 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (765)
Q Consensus 345 ~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~ 424 (765)
+..++.|.+|++...+--..+..-..++++++|||||+.+.+-|+-+-.|.||.+.+. ..+-
T Consensus 67 ~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~------------------~~~~ 128 (447)
T KOG4497|consen 67 AYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ------------------KGYL 128 (447)
T ss_pred eeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc------------------eeEE
Confidence 3568899999999998888898888999999999999777666665667999999651 2233
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCC
Q 004255 425 LHRGITSATIQDICFSHYSQWIAIVSSKG 453 (765)
Q Consensus 425 l~rG~~~a~I~slaFSpDg~~Las~S~dg 453 (765)
+.. ..+.+..++|+|||++.|..+.+.
T Consensus 129 ~~~--pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 129 LPH--PKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred ecc--cccCceeEEECCCCceeeeeeccc
Confidence 321 122368899999999999998763
No 264
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.30 E-value=0.0041 Score=66.57 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=69.0
Q ss_pred CCCCeEEEEECCC-C--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 346 DNAGIVVVKDFVT-R--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 346 ~~dG~V~IwDl~s-~--~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
..|....||.... + +..-.|..|.....++.|+|.++++|++|. ++.|-||=.+.. .+|=-+ .|+
T Consensus 74 s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSg-ar~isVcy~E~E----------NdWWVs-Khi 141 (361)
T KOG1523|consen 74 SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSG-ARLISVCYYEQE----------NDWWVS-KHI 141 (361)
T ss_pred cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccC-ccEEEEEEEecc----------cceehh-hhh
Confidence 3444445555422 2 233345567788999999999999999998 888999876431 122100 122
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
.+- ....|.+++|.|++-.||+||.|+.++||..-
T Consensus 142 kkP----irStv~sldWhpnnVLlaaGs~D~k~rVfSay 176 (361)
T KOG1523|consen 142 KKP----IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY 176 (361)
T ss_pred CCc----cccceeeeeccCCcceecccccCcceeEEEEe
Confidence 111 23469999999999999999999999999753
No 265
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.02 Score=65.16 Aligned_cols=290 Identities=12% Similarity=0.161 Sum_probs=152.1
Q ss_pred CCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 74 ~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
.+..|++=-..||++|--++-+.+++.. .-.|.++.++|+ ...|+.-+.... .
T Consensus 221 ~GTYL~t~Hk~GI~lWGG~~f~r~~RF~---Hp~Vq~idfSP~-------------EkYLVT~s~~p~--~--------- 273 (698)
T KOG2314|consen 221 KGTYLVTFHKQGIALWGGESFDRIQRFY---HPGVQFIDFSPN-------------EKYLVTYSPEPI--I--------- 273 (698)
T ss_pred CceEEEEEeccceeeecCccHHHHHhcc---CCCceeeecCCc-------------cceEEEecCCcc--c---------
Confidence 5778888888899999876544443322 245999999986 125543221110 0
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CC-----CEEEEEecCCeEEEEeCCeEEEEECCCCceeEEE
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RS-----SVCMVRCSPRIVAVGLATQIYCFDALTLENKFSV 227 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s-----~V~sV~~s~~~LaV~~~~~I~iwD~~t~~~l~tl 227 (765)
+..+.. -+..++|||++||.+.+++.. .+ ++..=.++.+++|--..+.|.||+...+.++.
T Consensus 274 --~~~~d~---------e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld-- 340 (698)
T KOG2314|consen 274 --VEEDDN---------EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLD-- 340 (698)
T ss_pred --cCcccC---------CCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeec--
Confidence 000111 246899999999999988864 22 44455566789997777899999987754321
Q ss_pred EecCCcccCCCCccccccccceeEEcc--ceEEEecCC--ceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhh
Q 004255 228 LTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNT--LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK 303 (765)
Q Consensus 228 ~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~--~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k 303 (765)
.-+.. .+ +..-+.++| ..|||=... .+.+..+.+ .-|+...+ | ....-
T Consensus 341 -~Kslk------i~----gIr~FswsP~~~llAYwtpe~~~~parvtL~-------------evPs~~~i--R--t~nlf 392 (698)
T KOG2314|consen 341 -KKSLK------IS----GIRDFSWSPTSNLLAYWTPETNNIPARVTLM-------------EVPSKREI--R--TKNLF 392 (698)
T ss_pred -ccccC------Cc----cccCcccCCCcceEEEEcccccCCcceEEEE-------------ecCcccee--e--eccce
Confidence 11110 00 224477888 889984321 100000000 00110000 0 00000
Q ss_pred hhhcccceeecccccccCCCCCCCCccCCCcccccccccc-ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCC
Q 004255 304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGA-DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT 382 (765)
Q Consensus 304 ~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~-~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~ 382 (765)
+++.. +| |++. ++--+.+.. ...+-. ..+.--.+.|+-+....+...--.-..+|.+.+|.|.|.
T Consensus 393 nVsDc---kL--hWQk-----~gdyLcvkv----dR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gd 458 (698)
T KOG2314|consen 393 NVSDC---KL--HWQK-----SGDYLCVKV----DRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGD 458 (698)
T ss_pred eeecc---EE--Eecc-----CCcEEEEEE----EeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCC
Confidence 00000 00 0000 000000000 000000 011112455666665543333233457889999999999
Q ss_pred EEEEEEcC--CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE---eCCCcEEE
Q 004255 383 LLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV---SSKGTCHV 457 (765)
Q Consensus 383 lLATaS~d--Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~---S~dgTVhI 457 (765)
.+|+-+.. ..++.+|-+.+. + ....++.+|.. .....+.|||.|+|++++ |..|++..
T Consensus 459 kF~vi~g~~~k~tvsfY~~e~~------~-------~~~~lVk~~dk----~~~N~vfwsPkG~fvvva~l~s~~g~l~F 521 (698)
T KOG2314|consen 459 KFAVISGNTVKNTVSFYAVETN------I-------KKPSLVKELDK----KFANTVFWSPKGRFVVVAALVSRRGDLEF 521 (698)
T ss_pred eEEEEEccccccceeEEEeecC------C-------Cchhhhhhhcc----cccceEEEcCCCcEEEEEEecccccceEE
Confidence 99887653 345778877531 1 01123444432 124679999999999877 45688999
Q ss_pred EeCCC
Q 004255 458 FVLSP 462 (765)
Q Consensus 458 wdl~~ 462 (765)
+|..-
T Consensus 522 ~D~~~ 526 (698)
T KOG2314|consen 522 YDTDY 526 (698)
T ss_pred Eecch
Confidence 99874
No 266
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.24 E-value=0.0022 Score=69.88 Aligned_cols=105 Identities=13% Similarity=0.065 Sum_probs=82.9
Q ss_pred ccccCCCCeEEEEECCC------CcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccc
Q 004255 342 GADMDNAGIVVVKDFVT------RAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 414 (765)
Q Consensus 342 ~~~~~~dG~V~IwDl~s------~~~i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~ 414 (765)
+++++.|-.++||.+.. .+++.... .|.+.|.||+|+-..++|.++..+|+ +.+.|+.+.
T Consensus 71 L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~-VI~HDiEt~------------ 137 (609)
T KOG4227|consen 71 LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT-VIKHDIETK------------ 137 (609)
T ss_pred EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce-eEeeecccc------------
Confidence 45778899999999753 35555443 46689999999999999999999886 667898652
Q ss_pred cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255 415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 415 ~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g 464 (765)
+.+|.+......+.|+.+.-+|-.+.|++++.++-|-+||+....
T Consensus 138 -----qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 138 -----QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred -----eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 456666433334579999999999999999999999999997654
No 267
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.08 E-value=0.0014 Score=71.77 Aligned_cols=99 Identities=12% Similarity=0.105 Sum_probs=71.6
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
....+.+|....+.. ..+-+|-+-++.++|+||++++.||..|++ |||=.. | +. .-+..+.
T Consensus 130 D~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~y-p-------a~---------f~Iesfc 190 (390)
T KOG3914|consen 130 DVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRY-P-------AT---------FVIESFC 190 (390)
T ss_pred CceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCce-EEEEec-C-------cc---------cchhhhc
Confidence 345566666655443 445699999999999999999999999776 898665 2 10 1222333
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~ 466 (765)
-||+ .-|..++.-++ +.|+++|.|+|+++||+......
T Consensus 191 lGH~-eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 191 LGHK-EFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred cccH-hheeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence 4544 34777887754 56999999999999999987655
No 268
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.08 E-value=0.0014 Score=45.01 Aligned_cols=39 Identities=31% Similarity=0.681 Sum_probs=33.7
Q ss_pred CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 004255 359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR 398 (765)
Q Consensus 359 ~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWd 398 (765)
++.+..+.+|...|.+++|++++.++++++.|+ .+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~-~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDG-TIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCC-eEEEcC
Confidence 345677889999999999999999999999966 499996
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.18 Score=55.14 Aligned_cols=110 Identities=21% Similarity=0.346 Sum_probs=73.0
Q ss_pred CCCeEEEEECCC-CcE--EEEeccCCCC----------eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 004255 347 NAGIVVVKDFVT-RAI--ISQFKAHTSP----------ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (765)
Q Consensus 347 ~dG~V~IwDl~s-~~~--i~~~~aH~~~----------IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~ 413 (765)
..|.|.++-+.. |.+ +..+-.|+++ +-+..|+|+|++|++.+..-..|.+|++.. |.
T Consensus 109 ~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d-------g~--- 178 (346)
T COG2706 109 HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD-------GK--- 178 (346)
T ss_pred cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc-------Cc---
Confidence 347788887754 322 2233345555 788999999999999987444699999964 31
Q ss_pred ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCc-ccccc
Q 004255 414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGDS-GFQTL 472 (765)
Q Consensus 414 ~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~gg~~-~~~~h 472 (765)
+ .....+.++.|. --..|+|+|++++..+.+ .++||-+|..++..+.. .++.+
T Consensus 179 -L--~~~~~~~v~~G~---GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i 233 (346)
T COG2706 179 -L--TPADPAEVKPGA---GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI 233 (346)
T ss_pred -c--ccccccccCCCC---CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence 0 001223334443 246799999999976665 49999999999875543 34444
No 270
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.24 Score=56.87 Aligned_cols=99 Identities=13% Similarity=0.244 Sum_probs=73.2
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEE-EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTA-SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATa-S~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
.++.+.++....++..+. -.+||.++.|+|+|+-++.+ +--=..+-|||++ | ..++.+-.
T Consensus 251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--------~----------~~v~df~e 311 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--------G----------KPVFDFPE 311 (566)
T ss_pred ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--------C----------CEeEeCCC
Confidence 367788887545555553 36899999999999987654 2223458899984 3 47788865
Q ss_pred ccccccEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCCCCcccc
Q 004255 428 GITSATIQDICFSHYSQWIAIVSS---KGTCHVFVLSPFGGDSGFQ 470 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~---dgTVhIwdl~~~gg~~~~~ 470 (765)
|.. .++-|+|.|++|+.++. .|.+-|||+..++....+.
T Consensus 312 gpR----N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~ 353 (566)
T KOG2315|consen 312 GPR----NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK 353 (566)
T ss_pred CCc----cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc
Confidence 543 45889999999999986 4789999999887765544
No 271
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.01 E-value=0.097 Score=59.77 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=53.6
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEE--eCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF--RIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVW--di~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
..|.++|+.+++. ..+..+........|+|||+.|+-.|..+..-.|| |+.. |. .+++. .
T Consensus 257 ~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-------g~--------~~rlt-~- 318 (419)
T PRK04043 257 PDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-------GS--------VEQVV-F- 318 (419)
T ss_pred cEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-------CC--------eEeCc-c-
Confidence 4677888877653 44444433233458999999888777544334444 5432 21 11221 1
Q ss_pred cccccccEEEEEEccCCCEEEEEeCC-------CcEEEEeCCCCCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVSSK-------GTCHVFVLSPFGG 465 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S~d-------gTVhIwdl~~~gg 465 (765)
.|. ....|||||++|+..+.. +..+||-++..++
T Consensus 319 ~g~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 319 HGK-----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred CCC-----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 122 124899999999888765 3245555544444
No 272
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.01 E-value=0.38 Score=53.50 Aligned_cols=57 Identities=16% Similarity=0.023 Sum_probs=41.6
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEEEE-EecCCeEEE-EeCCeEEEEECCCCceeEEEEe
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVCMV-RCSPRIVAV-GLATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~sV-~~s~~~LaV-~~~~~I~iwD~~t~~~l~tl~t 229 (765)
+.|.-+|.++|+.+....+...+.+. ....+.|.+ ..++.|++||+.+++.++....
T Consensus 115 g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred CEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 58999999999999888776655321 122334444 4567899999999998888764
No 273
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.00 E-value=0.0046 Score=71.04 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=66.6
Q ss_pred EEEECCCCcE--EEEe-ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255 352 VVKDFVTRAI--ISQF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (765)
Q Consensus 352 ~IwDl~s~~~--i~~~-~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG 428 (765)
.+|++...+. +... -.+.+.|.+++++|+.+.|+.|..||. |++||... + +..+.+.
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~-------~------------~t~~~ka 298 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTR-------G------------VTLLAKA 298 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe-EEEEEcCC-------C------------eeeeeee
Confidence 3667655432 2111 257788999999999999999999775 99999854 2 1111111
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 429 ~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
......++|+|||..+++++..|.+.+||+.-.
T Consensus 299 --~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 299 --EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred --cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 124688999999999999999999999998753
No 274
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.00 E-value=0.62 Score=51.80 Aligned_cols=91 Identities=15% Similarity=0.157 Sum_probs=55.9
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCC-CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 345 MDNAGIVVVKDFVTRAIISQFKAHTS-PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 345 ~~~dG~V~IwDl~s~~~i~~~~aH~~-~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
+..+|.+..+|..+++.+-....... ...+... .|.+|++++.+|. +.+||..+ | +.++
T Consensus 285 ~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~-l~~~d~~t-------G----------~~~~ 344 (377)
T TIGR03300 285 TDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY-LHWLSRED-------G----------SFVA 344 (377)
T ss_pred ECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE-EEEEECCC-------C----------CEEE
Confidence 45689999999999987765532111 1222222 3668888888775 89999755 4 4566
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 004255 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIw 458 (765)
++.-+.. ....+.++. |+ .|..++.||+++.|
T Consensus 345 ~~~~~~~-~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 345 RLKTDGS-GIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEcCCC-ccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 6543221 111222333 33 58889999998876
No 275
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.95 E-value=0.011 Score=65.61 Aligned_cols=97 Identities=9% Similarity=0.025 Sum_probs=73.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc---------CCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~---------dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~ 419 (765)
|.|.|.|..+++.+.++..-..|-- + +||||+.|..|.. +...|.|||+.+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~----------------- 87 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH----------------- 87 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-----------------
Confidence 8999999999999999986555543 4 9999999999888 6778999999762
Q ss_pred eEEEEEecccc-----cccEEEEEEccCCCEEEEEe-C-CCcEEEEeCCCCC
Q 004255 420 VHLYKLHRGIT-----SATIQDICFSHYSQWIAIVS-S-KGTCHVFVLSPFG 464 (765)
Q Consensus 420 ~~l~~l~rG~~-----~a~I~slaFSpDg~~Las~S-~-dgTVhIwdl~~~g 464 (765)
..+.++.-|.. ...-..+++||||++|.+.. . +..|-|.|+....
T Consensus 88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k 139 (352)
T TIGR02658 88 LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA 139 (352)
T ss_pred cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc
Confidence 34444442211 11234689999999999876 3 6889999998754
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=96.93 E-value=0.0051 Score=65.26 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=73.8
Q ss_pred ccCCCCeEEEEECCCCcE--EEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255 344 DMDNAGIVVVKDFVTRAI--ISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~--i~~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~ 420 (765)
....+|.+.+-+...... ++..++|.-++....|+.. -+++.||++|+. +.-||++-. + .
T Consensus 138 vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p------~----------~ 200 (339)
T KOG0280|consen 138 VSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIP------K----------T 200 (339)
T ss_pred EEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCC------c----------c
Confidence 344566666555554443 3478999999999999863 468889998665 999999721 2 2
Q ss_pred EEEEEecccccccEEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255 421 HLYKLHRGITSATIQDICFS-HYSQWIAIVSSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFS-pDg~~Las~S~dgTVhIwdl~~~gg~ 466 (765)
.++.-.+- +..-|.+|.=| |+..+|++|+-|.+|++||....+.+
T Consensus 201 ~i~~n~kv-H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 201 FIWHNSKV-HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred eeeeccee-eecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence 33321111 23458888777 56889999999999999999876654
No 277
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.84 E-value=0.021 Score=67.18 Aligned_cols=104 Identities=23% Similarity=0.303 Sum_probs=76.3
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC------CC---EEEEEeCCCCcccCCCCCCcc
Q 004255 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY------GN---NINIFRIMPSCMRSGSGNHKY 413 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d------Gt---~IrVWdi~~~~~~~~sG~~~~ 413 (765)
+-|.+.|+|.|+|+.++.+-+.|..|++.|.+|.|--... |+|.+.. |. .+.|=|+.+ |.
T Consensus 441 AvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrt-------Gl--- 509 (1062)
T KOG1912|consen 441 AVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRT-------GL--- 509 (1062)
T ss_pred EeecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEccc-------cc---
Confidence 3577899999999999999999999999999999976544 5555431 11 133445544 31
Q ss_pred ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 414 ~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
.+-++-.++.....|..|.-|.-|+||+..=.|.-+.|||+...
T Consensus 510 ------sk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 510 ------SKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred ------ccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 11111124556678999999999999999999999999999653
No 278
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.84 E-value=0.0066 Score=65.07 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=78.3
Q ss_pred ccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255 344 DMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~---~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~ 420 (765)
.+.+...|.||..... +..++|..|...|+.+.|+|.++.|+||+.|.+ -.||..... | .|.
T Consensus 27 v~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn-ayVw~~~~~------~----~Wk---- 91 (361)
T KOG1523|consen 27 VSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN-AYVWTQPSG------G----TWK---- 91 (361)
T ss_pred eccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC-ccccccCCC------C----eec----
Confidence 3455678899987654 467889999999999999999999999999665 899987321 2 132
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
+...|.|- +...+++.|+|.++.+|++|.-..|-||-.+.
T Consensus 92 ptlvLlRi--NrAAt~V~WsP~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 92 PTLVLLRI--NRAATCVKWSPKENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred cceeEEEe--ccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence 22334342 23478999999999999999999999987654
No 279
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.67 E-value=0.1 Score=55.95 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=54.9
Q ss_pred eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-----c-----ccccccE
Q 004255 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-----R-----GITSATI 434 (765)
Q Consensus 365 ~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~-----r-----G~~~a~I 434 (765)
|.+-.+.|+.+.|+++|+++++-+- -+++|||+.-. . .++.+.. + -..+..|
T Consensus 276 f~eivsSISD~kFs~ngryIlsRdy--ltvkiwDvnm~------k----------~pikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 276 FEEIVSSISDFKFSDNGRYILSRDY--LTVKIWDVNMA------K----------NPIKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred HHHHhhhhcceEEcCCCcEEEEecc--ceEEEEecccc------c----------CCceeechHHHHHHHHHhhhhccce
Confidence 3444578999999999999987665 46999998542 0 1222110 0 0001112
Q ss_pred ---EEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 435 ---QDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 435 ---~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
..+.||-|.+.+.+||-.+..-||.....
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ss 369 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTDSS 369 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeeccccC
Confidence 35899999999999999999999985543
No 280
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.57 E-value=0.21 Score=56.74 Aligned_cols=91 Identities=14% Similarity=0.246 Sum_probs=63.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE-cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS-VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS-~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
..+.|+++....+... ..-.+||...+|+|+++.+++.+ .....+.+||+.. ...+.+-.
T Consensus 255 snLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~------------------Nl~~~~Pe 315 (561)
T COG5354 255 SNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG------------------NLRFYFPE 315 (561)
T ss_pred ceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeeccccc------------------ceEEecCC
Confidence 4688888875443333 25689999999999999999988 5566789999853 13333322
Q ss_pred ccccccEEEEEEccCCCEEEEEeCC---CcEEEEeCCC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSP 462 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~d---gTVhIwdl~~ 462 (765)
+. =..+.|||.++|++.++.| |.+-|||...
T Consensus 316 ~~----rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 316 QK----RNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred cc----cccccccCcccEEEEecCCccccceEEeccCC
Confidence 21 1347799999999888766 4588887653
No 281
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.56 E-value=0.049 Score=65.30 Aligned_cols=101 Identities=11% Similarity=0.109 Sum_probs=68.6
Q ss_pred CeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCC
Q 004255 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (765)
Q Consensus 75 ~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~ 154 (765)
.+++..|-++.+-.+|+. .....++..-..+.|..|... +| +| .+|+.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~-~~~e~r~~~v~a~~v~imR~N--------------nr-~l--f~G~t-------------- 195 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLN-TEKETRTTNVSASGVTIMRYN--------------NR-NL--FCGDT-------------- 195 (1118)
T ss_pred cceeecchhhheeeeecc-cceeeeeeeccCCceEEEEec--------------Cc-EE--Eeecc--------------
Confidence 345555567778888884 444445555555557776643 22 33 23321
Q ss_pred CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEEEeC-C---------eEEEEECCCCce
Q 004255 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGLA-T---------QIYCFDALTLEN 223 (765)
Q Consensus 155 ~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV~~~-~---------~I~iwD~~t~~~ 223 (765)
-++|.+-|.++.+.+|++..+ +.|.++...+++|+++.. . -|++||++.++.
T Consensus 196 -----------------~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra 258 (1118)
T KOG1275|consen 196 -----------------RGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA 258 (1118)
T ss_pred -----------------cceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhc
Confidence 268999999999999999865 689999999988876542 1 189999988764
Q ss_pred e
Q 004255 224 K 224 (765)
Q Consensus 224 l 224 (765)
+
T Consensus 259 l 259 (1118)
T KOG1275|consen 259 L 259 (1118)
T ss_pred c
Confidence 3
No 282
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.52 E-value=0.16 Score=55.51 Aligned_cols=97 Identities=12% Similarity=0.143 Sum_probs=59.2
Q ss_pred CeEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 349 GIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 349 G~V~IwDl~s~~-~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
+.|.+|++...+ .+.. .-+..++..++....+.+++.|+.... +.++..... + ..+..+.|
T Consensus 107 ~~l~v~~l~~~~~l~~~-~~~~~~~~i~sl~~~~~~I~vgD~~~s-v~~~~~~~~------~----------~~l~~va~ 168 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKK-AFYDSPFYITSLSVFKNYILVGDAMKS-VSLLRYDEE------N----------NKLILVAR 168 (321)
T ss_dssp TEEEEEEEETTSSEEEE-EEE-BSSSEEEEEEETTEEEEEESSSS-EEEEEEETT------T----------E-EEEEEE
T ss_pred CEEEEEEccCcccchhh-heecceEEEEEEeccccEEEEEEcccC-EEEEEEEcc------C----------CEEEEEEe
Confidence 467777777666 3222 122222233334444668988887555 777644221 1 34555555
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
......++++.|-.|++.++++..+|.++++..++.
T Consensus 169 d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 169 DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 444456899999877789999999999999998753
No 283
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=96.49 E-value=0.017 Score=64.89 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=50.2
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (765)
Q Consensus 342 ~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi 399 (765)
+.+++..|.|-|||-.+++.+.-++|-..-|+||.=+|---+|||++. ++-||||--
T Consensus 409 VvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGi-d~DVKIWTP 465 (559)
T KOG1334|consen 409 VVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGI-DHDVKIWTP 465 (559)
T ss_pred EEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCC-ccceeeecC
Confidence 346778899999999999999988887779999999999999999999 567999974
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.42 E-value=0.035 Score=62.32 Aligned_cols=98 Identities=21% Similarity=0.272 Sum_probs=73.6
Q ss_pred ccCCCC-eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 344 DMDNAG-IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 344 ~~~~dG-~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
-+..|| .+-|+|..+++. ..+...-+.|-+|+.+|||++++.|-... .|.|.|+.+ |. .++
T Consensus 376 igt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~-el~vididn-------gn---------v~~ 437 (668)
T COG4946 376 IGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRF-ELWVIDIDN-------GN---------VRL 437 (668)
T ss_pred EeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCce-EEEEEEecC-------CC---------eeE
Confidence 456777 799999988764 55666778999999999999999887644 477778855 31 222
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCC----cEEEEeCCC
Q 004255 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKG----TCHVFVLSP 462 (765)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~dg----TVhIwdl~~ 462 (765)
.+-. ..+-|++++|||+++|||-+=-+| .|||||+..
T Consensus 438 idkS---~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 438 IDKS---EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred eccc---ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 2211 124699999999999999987765 589999875
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.38 E-value=0.27 Score=52.44 Aligned_cols=96 Identities=15% Similarity=0.249 Sum_probs=57.7
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCC----------EEEEEeCCCCc---c-cCCCCCCccccCC---cceEEEE----Ee
Q 004255 368 HTSPISALCFDPSGTLLVTASVYGN----------NINIFRIMPSC---M-RSGSGNHKYDWNS---SHVHLYK----LH 426 (765)
Q Consensus 368 H~~~IsaLaFSpdG~lLATaS~dGt----------~IrVWdi~~~~---~-~~~sG~~~~~~~~---s~~~l~~----l~ 426 (765)
+...|.++.|+|.-++|..|+.... -+..|.+.... . ...... ...... ...++.. .+
T Consensus 146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~-~~~~~~~~~~~~~~~~~~~fs~ 224 (282)
T PF15492_consen 146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED-DITASSKRRGLLRIPSFKFFSR 224 (282)
T ss_pred CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCc-cccccccccceeeccceeeeec
Confidence 4779999999999888877654211 25567664321 0 000000 000000 0011111 12
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g 464 (765)
.+.....|..|+.||||+.||+...+|.+-||++....
T Consensus 225 ~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 225 QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 23334569999999999999999999999999997644
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.36 E-value=0.7 Score=49.38 Aligned_cols=32 Identities=22% Similarity=0.504 Sum_probs=28.7
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (765)
Q Consensus 367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi 399 (765)
.-...|..|+.||||++||+....|. |-||++
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~-lsLW~i 258 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGS-LSLWEI 258 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCe-EEEEec
Confidence 34678999999999999999999776 999999
No 287
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0095 Score=65.56 Aligned_cols=96 Identities=25% Similarity=0.266 Sum_probs=75.4
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 004255 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (765)
Q Consensus 351 V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~ 429 (765)
|++.+-.+.+.+.-+..|..-|..|+|||... +|..+|. |.+|+|+|+.+.+. ...|...
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl-~nkiki~dlet~~~---------------vssy~a~--- 235 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASL-GNKIKIMDLETSCV---------------VSSYIAY--- 235 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeecc-CceEEEEeccccee---------------eeheecc---
Confidence 77777777777777788999999999999888 7778888 78899999976311 2233332
Q ss_pred ccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCCCc
Q 004255 430 TSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDS 467 (765)
Q Consensus 430 ~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~gg~~ 467 (765)
..+++++|.-|. .+|.+|-.+|.|.|||+....++.
T Consensus 236 --~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 236 --NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred --CCceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence 359999999776 678888899999999998776654
No 288
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.21 E-value=0.34 Score=55.16 Aligned_cols=155 Identities=16% Similarity=0.251 Sum_probs=98.1
Q ss_pred CCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe---CCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 004255 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~---~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~ 246 (765)
-.++.|+++....+-..+...++|+++.++| +.+++.. ...+.+||+.+. ..+.+...+
T Consensus 254 esnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~--------------- 317 (561)
T COG5354 254 ESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQK--------------- 317 (561)
T ss_pred cceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcc---------------
Confidence 3689999998555554556678999999977 4444332 346899998764 333332211
Q ss_pred cceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCC
Q 004255 247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (765)
Q Consensus 247 ~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~ 324 (765)
.+-+-|+| ||+-+++-+
T Consensus 318 rNT~~fsp~~r~il~agF~------------------------------------------------------------- 336 (561)
T COG5354 318 RNTIFFSPHERYILFAGFD------------------------------------------------------------- 336 (561)
T ss_pred cccccccCcccEEEEecCC-------------------------------------------------------------
Confidence 12345666 666665522
Q ss_pred CCCCccCCCccccccccccccCCCCeEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEc-----CCCEEEEEe
Q 004255 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASV-----YGNNINIFR 398 (765)
Q Consensus 325 s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~-~i~~~~aH~~~IsaLaFSpdG~lLATaS~-----dGt~IrVWd 398 (765)
..-|.+.|||....- ++..|.+- ..+.+.|+|||.++.++-. .|..|+|||
T Consensus 337 ---------------------nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 337 ---------------------NLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred ---------------------ccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEE
Confidence 123567778876654 33366654 2345789999999887643 255799999
Q ss_pred CCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 004255 399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453 (765)
Q Consensus 399 i~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dg 453 (765)
+. | ...++ .+.+.|.|-|++..+.|.+.
T Consensus 394 v~--------g----------~~~fe---------l~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 394 VY--------G----------AKVFE---------LTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ec--------C----------chhhh---------hhhccccCCcccceeeccCC
Confidence 83 3 12222 34578899899988887766
No 289
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.19 E-value=2.5 Score=46.07 Aligned_cols=50 Identities=10% Similarity=0.195 Sum_probs=40.6
Q ss_pred CEEEEEECCCC-------eEEEEEeCCCCEEEEEecCCeEEEEeCCeEEEEECCCCc
Q 004255 173 TAVRFYSFQSH-------CYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLE 222 (765)
Q Consensus 173 ~tV~lWdlktg-------~~v~tL~~~s~V~sV~~s~~~LaV~~~~~I~iwD~~t~~ 222 (765)
+.|.++++... +.++..+++++|++|..-...|+++..++|++|++...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcc
Confidence 78999999884 455666788999999866766888888999999988776
No 290
>KOG4415 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.0037 Score=62.01 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=43.0
Q ss_pred cccccceecccccccCCCCccccceeEeeeeeEEeccCC-ccccccceeEEEEcCC
Q 004255 666 LDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGR-LPIWQSSKISFFKMDS 720 (765)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~s~~e~~~~~~~-~~~w~~~~~~f~~~~~ 720 (765)
.|+..+++++... .+...+|+..| |+.+|+.+|.++ ..|||.|||.|+.+..
T Consensus 6 gPi~~~~s~dsla--adh~GdEDeeW-l~hVEi~Th~gPHRriWmGPQFef~eih~ 58 (247)
T KOG4415|consen 6 GPIMAFASVDSLA--ADHIGDEDEEW-LPHVEIRTHLGPHRRIWMGPQFEFFEIHE 58 (247)
T ss_pred Cceeeeeeccccc--ccccCcccccc-ccceEEEeccCccceeeecCceeEEEecC
Confidence 5676667766533 26678999999 999999999998 5999999999998876
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.04 E-value=3.1 Score=52.35 Aligned_cols=77 Identities=8% Similarity=0.223 Sum_probs=50.0
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC-CCE
Q 004255 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY-SQW 445 (765)
Q Consensus 367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD-g~~ 445 (765)
.....|..|+||+|++.||..-. +. |.+|-...+ .| -..++++-.. ...+..+.|+|. ...
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~-~~-vqLWt~~NY-----------HW----YLKqei~~~~-~~~~~~~~Wdpe~p~~ 363 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLE-DR-VQLWTRSNY-----------HW----YLKQEIRFSS-SESVNFVKWDPEKPLR 363 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEec-CC-ceEEEeeCC-----------EE----EEEEEEEccC-CCCCCceEECCCCCCE
Confidence 34567899999999999999775 44 999987431 11 1122333211 123445999985 466
Q ss_pred EEEEeCCCcEEEEeCC
Q 004255 446 IAIVSSKGTCHVFVLS 461 (765)
Q Consensus 446 Las~S~dgTVhIwdl~ 461 (765)
|...+.+|.+..++..
T Consensus 364 L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 364 LHVLTSNGQYEIYDFA 379 (928)
T ss_pred EEEEecCCcEEEEEEE
Confidence 8888887887665543
No 292
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.95 E-value=0.0054 Score=72.69 Aligned_cols=122 Identities=16% Similarity=0.122 Sum_probs=77.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
+.++.+...++.|-- .-+-|++|.-.| +++|++. +|...+-++.|..+|..|+=.- .+
T Consensus 1097 frd~~~~fTc~afs~-------~~~hL~vG~~~Geik~~nv~-sG~~e~s~ncH~SavT~vePs~-------------dg 1155 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSG-------GTNHLAVGSHAGEIKIFNVS-SGSMEESVNCHQSAVTLVEPSV-------------DG 1155 (1516)
T ss_pred hhccccceeeEEeec-------CCceEEeeeccceEEEEEcc-CccccccccccccccccccccC-------------Cc
Confidence 444555555555532 246789998877 9999994 6878888999999999887331 12
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC-CCeEEEEEeCCCCEEEEEecC---CeEE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ-SHCYEHVLRFRSSVCMVRCSP---RIVA 206 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlk-tg~~v~tL~~~s~V~sV~~s~---~~La 206 (765)
.+++..+. | +.--..+|++. ++..+|++.-.. +|.|+. ..++
T Consensus 1156 s~~Ltsss----------------------~---------S~PlsaLW~~~s~~~~~Hsf~ed~---~vkFsn~~q~r~~ 1201 (1516)
T KOG1832|consen 1156 STQLTSSS----------------------S---------SSPLSALWDASSTGGPRHSFDEDK---AVKFSNSLQFRAL 1201 (1516)
T ss_pred ceeeeecc----------------------c---------cCchHHHhccccccCccccccccc---eeehhhhHHHHHh
Confidence 24443111 0 01135689986 567777775443 455554 2333
Q ss_pred EEeCCeEEEEECCCCceeEEEE
Q 004255 207 VGLATQIYCFDALTLENKFSVL 228 (765)
Q Consensus 207 V~~~~~I~iwD~~t~~~l~tl~ 228 (765)
....+...+||+.|+..+.++.
T Consensus 1202 gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1202 GTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred cccccceEEEecccCcHHHHhc
Confidence 3444679999999987666543
No 293
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.84 E-value=0.059 Score=63.27 Aligned_cols=105 Identities=14% Similarity=0.240 Sum_probs=68.8
Q ss_pred CCeEEEEEecCcEEEEEccCCCcceEeeeeccC-CEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDG-PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (765)
Q Consensus 74 ~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg-~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~ 152 (765)
.++-++++.+-|+-|-|+++..+-..-|..-+. .|..+++.|-| .+|.-+| ..
T Consensus 35 ~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~-----------a~~~wiV-st-------------- 88 (1081)
T KOG0309|consen 35 SGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHP-----------AKPYWIV-ST-------------- 88 (1081)
T ss_pred ccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCC-----------CCceeEE-ec--------------
Confidence 466788888889999999887766555544443 37788888754 3455443 32
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCC--CeEEEEEe-CC-CCEEEEEecC---CeEEEEeC-CeEEEEECCCCc
Q 004255 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQS--HCYEHVLR-FR-SSVCMVRCSP---RIVAVGLA-TQIYCFDALTLE 222 (765)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlkt--g~~v~tL~-~~-s~V~sV~~s~---~~LaV~~~-~~I~iwD~~t~~ 222 (765)
++.+-.+|++.. .+.|.-+. .+ ..|.++.+++ .+||.+.. ..+++||++...
T Consensus 89 ------------------s~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 89 ------------------SNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred ------------------CcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 123556888853 23333222 23 4789999987 58887664 469999987653
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.53 E-value=4.7 Score=44.05 Aligned_cols=71 Identities=18% Similarity=0.303 Sum_probs=48.3
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (765)
Q Consensus 369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las 448 (765)
...|-+|+|+++|.++|..|-.|+.+-+||..+ | ..+... .-..++.++-.+++ |+++
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-------g----------~~~~~~----~l~D~cGva~~~~~-f~~s 273 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-------G----------RLLGSV----PLPDACGVAPTDDG-FLVS 273 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-------C----------CEeecc----ccCceeeeeecCCc-eEEe
Confidence 467899999999999988888899999999865 3 222221 11346777777777 5555
Q ss_pred EeCCCcEEEEeCCCCC
Q 004255 449 VSSKGTCHVFVLSPFG 464 (765)
Q Consensus 449 ~S~dgTVhIwdl~~~g 464 (765)
++ .|. ++.+...+
T Consensus 274 sG-~G~--~~~~~~~~ 286 (305)
T PF07433_consen 274 SG-QGQ--LIRLSPDG 286 (305)
T ss_pred CC-Ccc--EEEccCcc
Confidence 44 443 55555543
No 295
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.015 Score=65.91 Aligned_cols=85 Identities=20% Similarity=0.309 Sum_probs=61.8
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 004255 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (765)
Q Consensus 361 ~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS 440 (765)
.+..|.+|+..|.+++-=.+.+-+++||. ++++++|.+++.- +.-| ...+.+++.. +...|.++.|=
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASk-DKTVKLWSik~Eg--D~~~--------tsaCQfTY~a--Hkk~i~~igfL 793 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASK-DKTVKLWSIKPEG--DEIG--------TSACQFTYQA--HKKPIHDIGFL 793 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccC-CceEEEEEecccc--Cccc--------cceeeeEhhh--ccCcccceeee
Confidence 35678899999998876667778889999 5679999998741 1111 1124444432 34579999999
Q ss_pred cCCCEEEEEeCCCcEEEEeC
Q 004255 441 HYSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 441 pDg~~Las~S~dgTVhIwdl 460 (765)
.|-+++++ -||-+|+||-
T Consensus 794 ~~lr~i~S--cD~giHlWDP 811 (1034)
T KOG4190|consen 794 ADLRSIAS--CDGGIHLWDP 811 (1034)
T ss_pred eccceeee--ccCcceeecc
Confidence 99998865 4889999984
No 296
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.40 E-value=0.036 Score=58.15 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=71.4
Q ss_pred cccCCCCeEEEEECCCCcE-EEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCccc-CCCCCCccccC-Cc
Q 004255 343 ADMDNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMR-SGSGNHKYDWN-SS 418 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~~~-i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~-~~sG~~~~~~~-~s 418 (765)
..+..+|.+.|||.+.... +..+++|+.+|+-+-|+| ++..|.|+|+||. +.-||..+.+.. +........|- +.
T Consensus 196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~wdas~~~l~i~~~~s~~s~WLsgD 274 (319)
T KOG4714|consen 196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWHWDASTTFLSISNQASVISSWLSGD 274 (319)
T ss_pred EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEEEcCCCceEEecCccccccccccCC
Confidence 3577899999999998754 445789999999999999 6889999999886 666887532211 00000111121 11
Q ss_pred c-eEEEEEecccccccEEEE-EEccCCCEEEEEeCCCcEEEEe
Q 004255 419 H-VHLYKLHRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFV 459 (765)
Q Consensus 419 ~-~~l~~l~rG~~~a~I~sl-aFSpDg~~Las~S~dgTVhIwd 459 (765)
. +-+.++. +.-+....+| +|.--|..|++|++-+-|.|++
T Consensus 275 ~v~s~i~i~-~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 275 PVKSRIEIT-SLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cccceEeee-ccccccceeeeeeeccCceEEeccccceEEEec
Confidence 0 1111221 1111112222 3555678899999999888875
No 297
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.40 E-value=0.053 Score=36.77 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=26.6
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255 431 SATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (765)
Q Consensus 431 ~a~I~slaFSpDg~~Las~S~dgTVhIwd 459 (765)
...|.+++|+++++++++++.|+++++|+
T Consensus 12 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 12 TGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34699999999999999999999999996
No 298
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=95.25 E-value=1.1 Score=47.66 Aligned_cols=80 Identities=13% Similarity=0.071 Sum_probs=57.6
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC--CEEEE
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS--QWIAI 448 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg--~~Las 448 (765)
.=.+.+|+.....+|+++.||+ +-|||++.. +. ......-.|-++++.|..+.||+-| ..|..
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~-~~I~DVR~~------~t--------pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~ 269 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGT-CAIYDVRNM------AT--------PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI 269 (344)
T ss_pred CceeeeeccCcceEEEEecCCc-EEEEEeccc------cc--------chhhhcccCCCCCCceEEEEecCCCcceEEEE
Confidence 3467889999999999999886 899999652 21 0111112244566779999999876 45667
Q ss_pred EeCCCcEEEEeCCCCCC
Q 004255 449 VSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 449 ~S~dgTVhIwdl~~~gg 465 (765)
+-.-+.+||-|+..+..
T Consensus 270 sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 270 SEHFSRVHVVDTRNYVN 286 (344)
T ss_pred ecCcceEEEEEcccCce
Confidence 76778899999988654
No 299
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.17 E-value=2 Score=46.86 Aligned_cols=94 Identities=22% Similarity=0.225 Sum_probs=61.6
Q ss_pred CCeEEEEECCCCcEEEE--e--ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 348 AGIVVVKDFVTRAIISQ--F--KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~--~--~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
+-.+.+-|..+|+.+.+ + .-|.-.|.-|+++++|..++-.=.+|- -++..| .+.
T Consensus 137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~---~~~~~P-------------------Lva 194 (305)
T PF07433_consen 137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGD---PGDAPP-------------------LVA 194 (305)
T ss_pred CCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCC---CCccCC-------------------eEE
Confidence 34566778899998887 5 338889999999999987765433332 112111 111
Q ss_pred EEeccc--------------ccccEEEEEEccCCCEEEEEeCC-CcEEEEeCCCC
Q 004255 424 KLHRGI--------------TSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPF 463 (765)
Q Consensus 424 ~l~rG~--------------~~a~I~slaFSpDg~~Las~S~d-gTVhIwdl~~~ 463 (765)
.+++|. -..-|-+|+|+.|+.++|++|-+ +.+.+||..+.
T Consensus 195 ~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 195 LHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred EEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 111111 01238899999999999877765 57899988763
No 300
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=95.08 E-value=0.053 Score=69.07 Aligned_cols=119 Identities=12% Similarity=0.173 Sum_probs=85.9
Q ss_pred ccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc-----cC-----------
Q 004255 344 DMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-----RS----------- 406 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~-----~~----------- 406 (765)
+++.||.|++|....+..+..++ +-.+.|+.+.|+.+|..+..+..||. +-+|.+.+-+. ++
T Consensus 2225 tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~-l~l~q~~pk~~~s~qchnk~~~Df~Fi~s 2303 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD-LSLWQASPKPYTSWQCHNKALSDFRFIGS 2303 (2439)
T ss_pred ecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCc-eeecccCCcceeccccCCccccceeeeeh
Confidence 67899999999999998888876 33488999999999999999888775 99999876321 00
Q ss_pred --------CCCCCccccCCc----ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCc
Q 004255 407 --------GSGNHKYDWNSS----HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 467 (765)
Q Consensus 407 --------~sG~~~~~~~~s----~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~ 467 (765)
..+...-+|+.- ...+.+. |...++++++-|.-+.|.+|+.+|.|.|||+....-..
T Consensus 2304 ~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~----H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2304 LLATAGRSSDNRNVCLWDTLLPPMNSLVHTC----HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred hhhccccCCCCCcccchhcccCcccceeeee----cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH
Confidence 011111123221 1222222 22347899999999999999999999999998765443
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=94.80 E-value=0.29 Score=51.79 Aligned_cols=101 Identities=12% Similarity=0.050 Sum_probs=64.6
Q ss_pred CCCCeEEEEECCC--CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 346 DNAGIVVVKDFVT--RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 346 ~~dG~V~IwDl~s--~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
..|.++++.++.. .+.+..++. -.++++++|+|++++++.++ -..|-.|.|... + ..++.
T Consensus 135 sndht~k~~~~~~~s~~~~~h~~~--~~~ns~~~snd~~~~~~Vgd-s~~Vf~y~id~~------s---------ey~~~ 196 (344)
T KOG4532|consen 135 SNDHTGKTMVVSGDSNKFAVHNQN--LTQNSLHYSNDPSWGSSVGD-SRRVFRYAIDDE------S---------EYIEN 196 (344)
T ss_pred cCCcceeEEEEecCcccceeeccc--cceeeeEEcCCCceEEEecC-CCcceEEEeCCc------c---------ceeee
Confidence 4455666665543 333333322 23789999999999998877 344667777431 1 01111
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
.+-..+...=.+.+||.....+|+++.||++-|||+...+.
T Consensus 197 -~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 197 -IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred -eEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 11112222346789999999999999999999999987554
No 302
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=94.76 E-value=0.37 Score=57.30 Aligned_cols=99 Identities=17% Similarity=0.301 Sum_probs=71.7
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC---CC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 004255 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP---SG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp---dG-~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s 418 (765)
+.++..|.|.|||+..+..+..|..|.++|..|+|=+ +. .+|+.-.. -..+-+|+..+ |
T Consensus 83 AsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~-ss~lvLwntdt-------G--------- 145 (1062)
T KOG1912|consen 83 ASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHG-SSTLVLWNTDT-------G--------- 145 (1062)
T ss_pred EeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecC-CcEEEEEEccC-------C---------
Confidence 4567789999999999999999999999999999865 33 23433333 34699999865 5
Q ss_pred ceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCcEEEEeCC
Q 004255 419 HVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 419 ~~~l~~l~rG~~~a~I~slaFSp-Dg~~Las~S~dgTVhIwdl~ 461 (765)
.++++...++ ....|+.|.| |.+.++.-+..|.+-+-+.-
T Consensus 146 -~k~Wk~~ys~--~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 146 -EKFWKYDYSH--EILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred -ceeeccccCC--cceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 4666654332 2355688887 56788888888887776654
No 303
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.55 E-value=0.13 Score=58.51 Aligned_cols=118 Identities=18% Similarity=0.223 Sum_probs=76.6
Q ss_pred cccCCCCeEEEEECCC-------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCc--------ccCC
Q 004255 343 ADMDNAGIVVVKDFVT-------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC--------MRSG 407 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s-------~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~--------~~~~ 407 (765)
.++..|.+|++|.++. ..+..+.++|+.+|..+.|=.|-+++|++. |. |++||---.. .+-+
T Consensus 751 iSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD--~g-iHlWDPFigr~Laq~~dapk~~ 827 (1034)
T KOG4190|consen 751 ISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCD--GG-IHLWDPFIGRLLAQMEDAPKEG 827 (1034)
T ss_pred eeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeecc--Cc-ceeecccccchhHhhhcCcccC
Confidence 4678899999999864 236667789999999999999999998764 43 9999942110 0001
Q ss_pred CCCC-----ccc---c-----CCcceEEE---------EEec---ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 408 SGNH-----KYD---W-----NSSHVHLY---------KLHR---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 408 sG~~-----~~~---~-----~~s~~~l~---------~l~r---G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
.|.. ..+ . ..+-.+++ +++- -..++.+.+++.-+.|+|+|++-..|++-+.|...
T Consensus 828 a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 828 AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARN 907 (1034)
T ss_pred CCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCC
Confidence 1100 000 0 00001111 2211 01234588999999999999999999999988765
Q ss_pred C
Q 004255 463 F 463 (765)
Q Consensus 463 ~ 463 (765)
.
T Consensus 908 G 908 (1034)
T KOG4190|consen 908 G 908 (1034)
T ss_pred C
Confidence 3
No 304
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.45 E-value=6.5 Score=40.06 Aligned_cols=57 Identities=11% Similarity=-0.030 Sum_probs=42.3
Q ss_pred CEEEEEECCCCeEEEEE-eCCC------CEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255 173 TAVRFYSFQSHCYEHVL-RFRS------SVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL-~~~s------~V~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t 229 (765)
+.|..+|.++|+.+... .... ......+..+.++++. .+.|+++|+.|++.++....
T Consensus 86 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 86 GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 58999999999999984 4321 1234445577677766 67899999999999888765
No 305
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=94.35 E-value=0.13 Score=54.84 Aligned_cols=104 Identities=16% Similarity=0.112 Sum_probs=70.5
Q ss_pred cccCCCCeEEEEECC-CCcEEEE-eccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 004255 343 ADMDNAGIVVVKDFV-TRAIISQ-FKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~-s~~~i~~-~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~ 419 (765)
.+++.||.+.-||++ .++.+-+ .+-|+..|.++.=+| .+.+++|||-|++ |++||++.- |
T Consensus 182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm------~---------- 244 (339)
T KOG0280|consen 182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNM------G---------- 244 (339)
T ss_pred EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcc------c----------
Confidence 367899999999998 3444444 667999999988876 6999999999665 999998642 2
Q ss_pred eEEEEEecccccccEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCCC
Q 004255 420 VHLYKLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaFSpDg~-~Las~S~dgTVhIwdl~~~gg~ 466 (765)
+++++-.- .+-|+-+.++|--. .|..+..-.-++|-+++....+
T Consensus 245 kPl~~~~v---~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e 289 (339)
T KOG0280|consen 245 KPLFKAKV---GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE 289 (339)
T ss_pred CccccCcc---ccceEEEEecchhhhHHHHHHHhcCceEEEecccccc
Confidence 34443221 23488888887532 2333344444677777654443
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=94.30 E-value=0.11 Score=56.49 Aligned_cols=103 Identities=16% Similarity=0.165 Sum_probs=68.1
Q ss_pred ccCCCCeEEEEECCCC----cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 004255 344 DMDNAGIVVVKDFVTR----AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~----~~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s 418 (765)
.+...|.|.++|++.+ ....+---|.+.|++|..=. ++.+|...+.+|+ |++||++-... +
T Consensus 269 ~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~----~--------- 334 (425)
T KOG2695|consen 269 NGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGK-IKLYDLRATKC----K--------- 334 (425)
T ss_pred ecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCc-eeEeeehhhhc----c---------
Confidence 5678899999999875 22233335889999987655 7788888888776 99999864211 0
Q ss_pred ceEEEEEecccccc-cEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 419 HVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 419 ~~~l~~l~rG~~~a-~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
.-+.... ||-+. .-.-+-..+....|+++++|-..+||.+..
T Consensus 335 -~~V~qYe-GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 335 -KSVMQYE-GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred -cceeeee-cccccccccccccccccceEEEccCeeEEEEEeccc
Confidence 1122222 33221 111123346677899999999999999985
No 307
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.28 E-value=8.4 Score=40.64 Aligned_cols=40 Identities=25% Similarity=0.427 Sum_probs=30.4
Q ss_pred CeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecC
Q 004255 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPF 116 (765)
Q Consensus 75 ~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~ 116 (765)
++.|++|.++|+-++++.......+++.... |.-|+++|.
T Consensus 7 ~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~--I~ql~vl~~ 46 (275)
T PF00780_consen 7 GDRLLVGTEDGLYVYDLSDPSKPTRILKLSS--ITQLSVLPE 46 (275)
T ss_pred CCEEEEEECCCEEEEEecCCccceeEeecce--EEEEEEecc
Confidence 5689999999999999954555666665543 999998863
No 308
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.26 E-value=0.36 Score=55.44 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=57.2
Q ss_pred CeEEEEECCCCcEEEEeccCCC--Ce-EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255 349 GIVVVKDFVTRAIISQFKAHTS--PI-SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~--~I-saLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l 425 (765)
..+.|||+.+|.....|..-.+ ++ .-..||.|++++|--.. ..|.||+... -.+++.
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~--~sisIyEtps------------------f~lld~ 341 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG--NSISIYETPS------------------FMLLDK 341 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc--ceEEEEecCc------------------eeeecc
Confidence 4799999999998888876322 22 24789999999987655 4599999722 123332
Q ss_pred ecccccccEEEEEEccCCCEEEEEeC
Q 004255 426 HRGITSATIQDICFSHYSQWIAIVSS 451 (765)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~Las~S~ 451 (765)
+ ...-..|.+..|||.++.||--+.
T Consensus 342 K-slki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 342 K-SLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred c-ccCCccccCcccCCCcceEEEEcc
Confidence 2 122234888999999999887654
No 309
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.24 E-value=0.2 Score=59.07 Aligned_cols=104 Identities=19% Similarity=0.197 Sum_probs=73.4
Q ss_pred ccccCCCCeEEEEECCCCc-EEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 004255 342 GADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (765)
Q Consensus 342 ~~~~~~dG~V~IwDl~s~~-~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~ 419 (765)
+++...|-.|..||+.+.. .+..+..-...-+.++|+. ++..|| |..|+.|+|||++. |.
T Consensus 130 latcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla--sshg~~i~vwd~r~-------gs--------- 191 (1081)
T KOG0309|consen 130 LATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA--SSHGNDIFVWDLRK-------GS--------- 191 (1081)
T ss_pred eeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh--hccCCceEEEeccC-------CC---------
Confidence 3456678899999998864 4444444344556788886 566664 34588999999965 31
Q ss_pred eEEEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCC
Q 004255 420 VHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~gg 465 (765)
..+..+++ +.+.|+.++|..-- ..+.+++.||||+.|+-+....
T Consensus 192 ~pl~s~K~--~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 192 TPLCSLKG--HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred cceEEecc--cceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence 46677765 44578999987432 4678999999999999876443
No 310
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.26 Score=57.46 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=60.1
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-cccccccE-EEEEEccCCCEEEE
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATI-QDICFSHYSQWIAI 448 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~-rG~~~a~I-~slaFSpDg~~Las 448 (765)
.|-.+.|+|.=.++|++-.+|. +-+..+.. ++++.+. +|. .+ .+++|.|||+.||+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~ge-lli~R~n~------------------qRlwtip~p~~---~v~~sL~W~~DGkllaV 79 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGE-LLIHRLNW------------------QRLWTIPIPGE---NVTASLCWRPDGKLLAV 79 (665)
T ss_pred ceEEEEEcCccchhheeccCCc-EEEEEecc------------------ceeEeccCCCC---ccceeeeecCCCCEEEE
Confidence 5667899999999999999886 56666532 5677765 442 24 49999999999999
Q ss_pred EeCCCcEEEEeCCCCCCCcc
Q 004255 449 VSSKGTCHVFVLSPFGGDSG 468 (765)
Q Consensus 449 ~S~dgTVhIwdl~~~gg~~~ 468 (765)
|=.||||+|-|+...++...
T Consensus 80 g~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred EecCCeEEEEEccCCCceec
Confidence 99999999999998766543
No 311
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=93.52 E-value=1.2 Score=49.45 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=42.1
Q ss_pred ccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255 344 DMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~ 401 (765)
+++.|+.|+|-....--.+..|. ||+.-|+.|+.-++ ..|+++|-|++ +|+||+..
T Consensus 168 taDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t-lr~Wd~~s 224 (390)
T KOG3914|consen 168 TADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT-LRLWDITS 224 (390)
T ss_pred EecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc-EEEEeccc
Confidence 44667777776665555556654 79999999999765 56889999665 99999975
No 312
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.44 E-value=11 Score=39.16 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=60.7
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG 428 (765)
|.|..++.. ++....+. .-..-+.|+|+|||+.|..+......|..|++... +. .+ ...+.+..+..+
T Consensus 115 g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~------~~---~~-~~~~~~~~~~~~ 182 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD------GG---EL-SNRRVFIDFPGG 182 (246)
T ss_dssp EEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT------TC---CE-EEEEEEEE-SSS
T ss_pred cceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEecccc------cc---ce-eeeeeEEEcCCC
Confidence 567677766 44333332 23456889999999988766665666888887431 10 00 001222333322
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 429 ~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
......+++..+|+..++.-..+.|.+|+.+
T Consensus 183 --~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 183 --PGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp --SCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred --CcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 1236789999999988888888888888754
No 313
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=93.26 E-value=0.18 Score=54.99 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=77.7
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l 425 (765)
+.+..|-|-|+++|.. ..|. ..+.|.++.|.-.+.+|.-|...|. |-+.|++..-.++ | ++...|
T Consensus 231 G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rnqG~--~----------~~a~rl 295 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRNQGN--G----------WCAQRL 295 (425)
T ss_pred cccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeecccCC--C----------cceEEE
Confidence 4556788888888753 3444 5678999999999999999999775 8899997521111 1 344444
Q ss_pred ecccccccEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCc---cccccc
Q 004255 426 HRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGDS---GFQTLS 473 (765)
Q Consensus 426 ~rG~~~a~I~slaFSp-Dg~~Las~S~dgTVhIwdl~~~gg~~---~~~~h~ 473 (765)
. +...|+++..=. ++++|++++.+|+|.+||+...++.. ...+|.
T Consensus 296 y---h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv 344 (425)
T KOG2695|consen 296 Y---HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV 344 (425)
T ss_pred E---cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccc
Confidence 4 234466665444 57899999999999999998776643 345664
No 314
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=93.03 E-value=18 Score=40.54 Aligned_cols=56 Identities=9% Similarity=0.005 Sum_probs=34.7
Q ss_pred CCEEEEEECCCCeEEEEEeCCCC--------EEEEE-----ecCCeEEEEeCCeEEEEECCCCceeEEE
Q 004255 172 PTAVRFYSFQSHCYEHVLRFRSS--------VCMVR-----CSPRIVAVGLATQIYCFDALTLENKFSV 227 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~s~--------V~sV~-----~s~~~LaV~~~~~I~iwD~~t~~~l~tl 227 (765)
.+.|.-+|.++|+.+...+...+ ...+. ....+++++.++.++++|+.+++.+++.
T Consensus 214 ~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 214 NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 35677788888887766543211 11111 1224445556678999999999877654
No 315
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.90 E-value=0.25 Score=38.89 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=28.1
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 432 a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
+.|..++|+|....||.++.||.|.||.++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 469999999999999999999999999984
No 316
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.67 E-value=0.35 Score=56.97 Aligned_cols=103 Identities=12% Similarity=0.069 Sum_probs=74.7
Q ss_pred ccCCCCeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 344 DMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~-~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
-|...|.|.+|.-..+.... ...+-++.+..++.|++..++|.|+. +..|-||.+... + ...+
T Consensus 50 ~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~-~g~V~v~ql~~~------~---------p~~~ 113 (726)
T KOG3621|consen 50 MGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTA-SGRVSVFQLNKE------L---------PRDL 113 (726)
T ss_pred EecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcC-CceEEeehhhcc------C---------CCcc
Confidence 35667999999977665322 23345567788999999988888887 456899988531 1 0122
Q ss_pred EEEecccc--cccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 423 YKLHRGIT--SATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 423 ~~l~rG~~--~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
..+.+++. ...|++++||+|+..|.+|.+.|+|+.-.++.
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 23333333 46799999999999999999999999988876
No 317
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=92.44 E-value=1.4 Score=56.17 Aligned_cols=111 Identities=12% Similarity=0.059 Sum_probs=65.7
Q ss_pred CCCCeEEEEECCCCcEEEEecc---------C------CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC-C
Q 004255 346 DNAGIVVVKDFVTRAIISQFKA---------H------TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS-G 409 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~~i~~~~a---------H------~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~s-G 409 (765)
..++.|++||..++... .+.+ + -.....|+|+|+|..|..+..+.+.|++||+......-.. |
T Consensus 702 ~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg 780 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG 780 (1057)
T ss_pred CCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence 45678999998776542 2211 1 1123569999999977777776778999998541000000 0
Q ss_pred CCccccCCcceEEEEEec--cc----ccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 410 NHKYDWNSSHVHLYKLHR--GI----TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 410 ~~~~~~~~s~~~l~~l~r--G~----~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
... ....++.+-. |. .-..-..++|++||+.+++-+.+++|++||...
T Consensus 781 ~~~-----~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t 834 (1057)
T PLN02919 781 DPT-----FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT 834 (1057)
T ss_pred ccc-----cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC
Confidence 000 0000111100 00 001235899999999999999999999999864
No 318
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=92.19 E-value=2.4 Score=48.69 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=38.4
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeCC----eEEEEECCCCc
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLAT----QIYCFDALTLE 222 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~~----~I~iwD~~t~~ 222 (765)
..+.++|+.+++....+.|...-..-+|+| +.|+.+... .|+++|+.+.+
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~ 273 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN 273 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence 368899999998888888877666677777 777766542 49999998776
No 319
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=92.15 E-value=17 Score=44.89 Aligned_cols=55 Identities=11% Similarity=0.176 Sum_probs=43.1
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 004255 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~ 400 (765)
.++.+|.||+||-...+....|++-..||..|..+.||++|+..+. +.+-|+++.
T Consensus 593 vgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t~ 647 (794)
T PF08553_consen 593 VGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDTL 647 (794)
T ss_pred EEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEEe
Confidence 4678999999996555566678888899999999999998754443 468888863
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.60 E-value=0.65 Score=55.51 Aligned_cols=96 Identities=17% Similarity=0.149 Sum_probs=67.7
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
+-+...|.|.+++.... . .+...|... +-+|.++||||.||+ |.|..+-+. ...+.
T Consensus 53 ~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~---------------~~~~~ 108 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTD---------------DEITQ 108 (846)
T ss_pred eeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCc-EEEeeccCC---------------cccee
Confidence 35678899999987643 2 444455443 789999999999887 777776331 11345
Q ss_pred EEEecccccccEEEEEEccC-----CCEEEEEeCCCcEEEEeCCCCCCCcc
Q 004255 423 YKLHRGITSATIQDICFSHY-----SQWIAIVSSKGTCHVFVLSPFGGDSG 468 (765)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpD-----g~~Las~S~dgTVhIwdl~~~gg~~~ 468 (765)
+.++| .|.+|+++|| ++.+++|+..| +-++.-+-.|....
T Consensus 109 ~df~r-----piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~ 153 (846)
T KOG2066|consen 109 YDFKR-----PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS 153 (846)
T ss_pred EecCC-----cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc
Confidence 66654 5889999999 67889999999 87876655544433
No 321
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.38 E-value=0.42 Score=57.21 Aligned_cols=99 Identities=17% Similarity=0.276 Sum_probs=71.4
Q ss_pred ccCCCCeEEEEECCCCcEEEE--eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255 344 DMDNAGIVVVKDFVTRAIISQ--FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~--~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~ 421 (765)
+....|.|.||- .+|++-.. .+-| +++|||+|.--.||.+=..| .+.||...+ ..
T Consensus 36 S~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g-~~~v~~~~~------------------~e 92 (1416)
T KOG3617|consen 36 SPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMG-VSDVQKTNT------------------TE 92 (1416)
T ss_pred cCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccc-eeEEEecCC------------------ce
Confidence 456678898883 34443222 2223 45699999988898887756 599998743 23
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~ 466 (765)
.+... -.+.+.|+-+.|||||..|+++..=|.+|+|.....|..
T Consensus 93 ~htv~-~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~ 136 (1416)
T KOG3617|consen 93 THTVV-ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEI 136 (1416)
T ss_pred eeeec-cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccc
Confidence 33332 235678999999999999999999999999999876544
No 322
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=91.24 E-value=3.4 Score=47.43 Aligned_cols=84 Identities=17% Similarity=0.183 Sum_probs=48.5
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 004255 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (765)
Q Consensus 350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~ 429 (765)
.|.+.|+.++.... +..-.+.-..=.|+|||+.++-+|..++.=+||-.... |. .....++..+.
T Consensus 263 ~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~------g~--------~~~riT~~~~~ 327 (425)
T COG0823 263 DIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE------GS--------QVTRLTFSGGG 327 (425)
T ss_pred cEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC------CC--------ceeEeeccCCC
Confidence 35556666554222 32211111234799999999988877766677765432 21 12233333221
Q ss_pred ccccEEEEEEccCCCEEEEEeCC
Q 004255 430 TSATIQDICFSHYSQWIAIVSSK 452 (765)
Q Consensus 430 ~~a~I~slaFSpDg~~Las~S~d 452 (765)
. . .-.|||||++|+..+..
T Consensus 328 ~--~--~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 328 N--S--NPVWSPDGDKIVFESSS 346 (425)
T ss_pred C--c--CccCCCCCCEEEEEecc
Confidence 1 1 56799999999988854
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.20 E-value=29 Score=42.53 Aligned_cols=50 Identities=8% Similarity=0.135 Sum_probs=34.3
Q ss_pred CCeEEEEECCCCcE-EEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCC
Q 004255 348 AGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIM 400 (765)
Q Consensus 348 dG~V~IwDl~s~~~-i~~~~aH~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~ 400 (765)
...|.+|.+....+ ...+..|-.+++|-+|++.-. ++++++. .+-+||..
T Consensus 192 t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e---~l~fY~sd 243 (933)
T KOG2114|consen 192 TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE---FLYFYDSD 243 (933)
T ss_pred cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc---eEEEEcCC
Confidence 34677788774442 445778888999999997655 4544443 58999873
No 324
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=90.65 E-value=0.48 Score=55.80 Aligned_cols=98 Identities=16% Similarity=0.287 Sum_probs=69.0
Q ss_pred ccccCCCCeEEEEECCCCc---------------EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC
Q 004255 342 GADMDNAGIVVVKDFVTRA---------------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 406 (765)
Q Consensus 342 ~~~~~~dG~V~IwDl~s~~---------------~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~ 406 (765)
++.++.||.++|..+.+.. .-.++.+|...|.-+.|+.+.+.|-|...+ +.|.||=+-.
T Consensus 29 IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~-GlIiVWmlyk----- 102 (1189)
T KOG2041|consen 29 IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS-GLIIVWMLYK----- 102 (1189)
T ss_pred EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC-ceEEEEeeec-----
Confidence 4567788988888775421 224678999999999999999999877775 4799997632
Q ss_pred CCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEE
Q 004255 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (765)
Q Consensus 407 ~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhI 457 (765)
|+ |- ..... .| ....|.+++|..||+.|+..-.||.|.|
T Consensus 103 --gs----W~---EEMiN-nR--nKSvV~SmsWn~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 103 --GS----WC---EEMIN-NR--NKSVVVSMSWNLDGTKICIVYEDGAVIV 141 (1189)
T ss_pred --cc----HH---HHHhh-Cc--CccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence 21 10 00100 11 2346899999999999999888887754
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=90.58 E-value=0.49 Score=54.86 Aligned_cols=57 Identities=16% Similarity=0.252 Sum_probs=44.9
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 004255 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 402 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~ 402 (765)
.-|..||.|++||...+. .++.-+.-..+.++|+|+|.+++.|+..|- +.+||+.-.
T Consensus 275 vlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALs 331 (545)
T PF11768_consen 275 VLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALS 331 (545)
T ss_pred EEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCce-EEEEEeecC
Confidence 357899999999987763 333333455688999999999999999775 999998653
No 326
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=90.43 E-value=0.77 Score=50.19 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=54.8
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc---c-----------cccEE
Q 004255 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI---T-----------SATIQ 435 (765)
Q Consensus 370 ~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~---~-----------~a~I~ 435 (765)
.-|+++.|+.+|.+||||..+|. +-+|.-... . .+.|.++... . ...|.
T Consensus 26 diis~vef~~~Ge~LatGdkgGR-Vv~f~r~~~------~----------~~ey~~~t~fqshepEFDYLkSleieEKin 88 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGR-VVLFEREKL------Y----------KGEYNFQTEFQSHEPEFDYLKSLEIEEKIN 88 (433)
T ss_pred cceeeEEeecccceEeecCCCCe-EEEeecccc------c----------ccceeeeeeeeccCcccchhhhhhhhhhhh
Confidence 46899999999999999999665 777864321 0 0111111110 0 12478
Q ss_pred EEEEccCCC--EEEEEeCCCcEEEEeCCCCCCCc
Q 004255 436 DICFSHYSQ--WIAIVSSKGTCHVFVLSPFGGDS 467 (765)
Q Consensus 436 slaFSpDg~--~Las~S~dgTVhIwdl~~~gg~~ 467 (765)
.|.|-++++ .+..++.|.||++|.+...+...
T Consensus 89 kIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~ 122 (433)
T KOG1354|consen 89 KIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK 122 (433)
T ss_pred hceecCCCCccEEEEecCCcceeeeeeecccccc
Confidence 899998874 56778899999999998765443
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=89.78 E-value=2.9 Score=49.76 Aligned_cols=115 Identities=11% Similarity=0.047 Sum_probs=64.9
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE---cCCCE-----------EEEEeCCCCcccCCCCC-
Q 004255 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS---VYGNN-----------INIFRIMPSCMRSGSGN- 410 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS---~dGt~-----------IrVWdi~~~~~~~~sG~- 410 (765)
...+++.+.|..+.+++.++.--. ...-++|+|||+++.+.+ +.|.+ +.+|++.........|.
T Consensus 212 ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~ 290 (635)
T PRK02888 212 KYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKF 290 (635)
T ss_pred ceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCE
Confidence 456788888988888777765432 235578999999987775 32322 33333321000000010
Q ss_pred --------CccccCC----cceEEEEEecccccccEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCC
Q 004255 411 --------HKYDWNS----SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFG 464 (765)
Q Consensus 411 --------~~~~~~~----s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~-dgTVhIwdl~~~g 464 (765)
.-.|... ....++.+.-| .....|++||||+++.+++. +.||.|.|+....
T Consensus 291 ~~V~gn~V~VID~~t~~~~~~~v~~yIPVG---KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 291 KTIGGSKVPVVDGRKAANAGSALTRYVPVP---KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred EEECCCEEEEEECCccccCCcceEEEEECC---CCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 0000000 00122223222 23568999999999877765 8999999998754
No 328
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=89.74 E-value=3.5 Score=38.42 Aligned_cols=65 Identities=20% Similarity=0.293 Sum_probs=45.7
Q ss_pred eEEEEECC---CC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 004255 372 ISALCFDP---SG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (765)
Q Consensus 372 IsaLaFSp---dG-~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~La 447 (765)
|++|++.. || .-|+.||. +..||||+=. ..++++.. ...|++++=... ..++
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~-D~~IRvf~~~-------------------e~~~Ei~e---~~~v~~L~~~~~-~~F~ 57 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSD-DFEIRVFKGD-------------------EIVAEITE---TDKVTSLCSLGG-GRFA 57 (111)
T ss_pred eeEEEEEecCCCCcceEEEecC-CcEEEEEeCC-------------------cEEEEEec---ccceEEEEEcCC-CEEE
Confidence 55666543 43 46777888 5579999842 36677652 346888887776 5688
Q ss_pred EEeCCCcEEEEeC
Q 004255 448 IVSSKGTCHVFVL 460 (765)
Q Consensus 448 s~S~dgTVhIwdl 460 (765)
.+..+|||-||+-
T Consensus 58 Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 58 YALANGTVGVYDR 70 (111)
T ss_pred EEecCCEEEEEeC
Confidence 9999999988865
No 329
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=89.63 E-value=0.44 Score=50.34 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=61.7
Q ss_pred CeEEEEECCCCcEE-EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 349 GIVVVKDFVTRAII-SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 349 G~V~IwDl~s~~~i-~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
+..++|++.-.+.. ...++- ..|.+++-+|..+.++.++.++..+-|||.+. +. + ..-+++
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~-~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn-------~~--~-----p~S~l~--- 220 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKAL-DAVTALCSHPAQQHLVCCGTDDGIVGLWDARN-------VA--M-----PVSLLK--- 220 (319)
T ss_pred cceeeeccccccccccccccc-ccchhhhCCcccccEEEEecCCCeEEEEEccc-------cc--c-----hHHHHH---
Confidence 34566776543321 111222 34999999997766665555566799999854 10 0 011111
Q ss_pred ccccccEEEEEEccC-CCEEEEEeCCCcEEEEeCCC
Q 004255 428 GITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 428 G~~~a~I~slaFSpD-g~~Las~S~dgTVhIwdl~~ 462 (765)
.+.+.|+.+-|+|. +..|.+++.||.+--||-+.
T Consensus 221 -ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 221 -AHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -HhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 13467999999984 58899999999999998774
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.43 E-value=12 Score=45.29 Aligned_cols=46 Identities=11% Similarity=0.034 Sum_probs=36.4
Q ss_pred CCEEEEEECCCCeEEEEEeCCCCEEEEEecCC-------eEEEEeCCeEEEEE
Q 004255 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR-------IVAVGLATQIYCFD 217 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~-------~LaV~~~~~I~iwD 217 (765)
+++|.|-.+-+.+..+++.|.-++.+|++.|. .+++|....+.++.
T Consensus 92 DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~e 144 (846)
T KOG2066|consen 92 DGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSE 144 (846)
T ss_pred CCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcceEEEeh
Confidence 36899999999999999999999999999873 44554443377764
No 331
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.31 E-value=1.2 Score=52.10 Aligned_cols=58 Identities=17% Similarity=0.314 Sum_probs=48.4
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeE-EEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPIS-ALCFDPSGTLLVTASVYGNNINIFRIMP 401 (765)
Q Consensus 342 ~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~Is-aLaFSpdG~lLATaS~dGt~IrVWdi~~ 401 (765)
++.+..+|.|.+.-+. -+.+.+|.-|..++. +++|.|||++||.|=.||+ |++-|+..
T Consensus 35 iA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~ 93 (665)
T KOG4640|consen 35 IATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEK 93 (665)
T ss_pred hheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccC
Confidence 4456788989888887 566778887777787 9999999999999999775 99999965
No 332
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=88.53 E-value=1.1 Score=35.14 Aligned_cols=30 Identities=20% Similarity=0.471 Sum_probs=26.8
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255 369 TSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (765)
Q Consensus 369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi 399 (765)
..+|.+++|+|...+||.++.+|. |.||++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCe-EEEEEC
Confidence 356999999999999999999876 899988
No 333
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=88.09 E-value=11 Score=39.89 Aligned_cols=48 Identities=13% Similarity=-0.077 Sum_probs=38.6
Q ss_pred CCeEEE--EEeCCCCEEEEEecCCeEEEEeCCeEEEEECCCCceeEEEEe
Q 004255 182 SHCYEH--VLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 182 tg~~v~--tL~~~s~V~sV~~s~~~LaV~~~~~I~iwD~~t~~~l~tl~t 229 (765)
.|+..+ .+++.+...++.+...+|++..++.|.||++.++++.+++..
T Consensus 216 ~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 216 NGEPSRKSTIQWSSAPQSVAYSSPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred CCCcCcccEEEcCCchhEEEEECCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 455443 677888888888888777777778899999999999888864
No 334
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.53 E-value=1.7 Score=48.44 Aligned_cols=51 Identities=10% Similarity=0.224 Sum_probs=43.7
Q ss_pred CCEEEEEECCCCeEEEEEeCCCCEEEEEecC---CeEEEEeCC-eEEEEECCCCc
Q 004255 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLAT-QIYCFDALTLE 222 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~---~~LaV~~~~-~I~iwD~~t~~ 222 (765)
.++|+|.|+++...+.++..+..++++++.. ..|-.|+.+ .|+|||++..+
T Consensus 215 ~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 215 GNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred CceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 3699999999999999999899999999876 577788765 59999998755
No 335
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=86.77 E-value=42 Score=34.79 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=40.2
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE-ccCCCEEEEE
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF-SHYSQWIAIV 449 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaF-SpDg~~Las~ 449 (765)
..-.|+++.+|++.++.-. +..|.++|-. | ..+.++.-.. ..+++++| -+|.+.|.+.
T Consensus 185 ~pDG~~vD~~G~l~va~~~-~~~I~~~~p~--------G----------~~~~~i~~p~--~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 185 YPDGLAVDSDGNLWVADWG-GGRIVVFDPD--------G----------KLLREIELPV--PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEEEBTTS-EEEEEET-TTEEEEEETT--------S----------CEEEEEE-SS--SSEEEEEEESTTSSEEEEE
T ss_pred CCCcceEcCCCCEEEEEcC-CCEEEEECCC--------c----------cEEEEEcCCC--CCEEEEEEECCCCCEEEEE
Confidence 3677999999998776555 4568888852 4 3555554331 36899999 4787877776
Q ss_pred eC
Q 004255 450 SS 451 (765)
Q Consensus 450 S~ 451 (765)
+.
T Consensus 244 ta 245 (246)
T PF08450_consen 244 TA 245 (246)
T ss_dssp EB
T ss_pred eC
Confidence 54
No 336
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=86.69 E-value=1.8 Score=48.07 Aligned_cols=103 Identities=15% Similarity=0.234 Sum_probs=60.0
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc--CCCCCCccccCCcceEEEEE
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR--SGSGNHKYDWNSSHVHLYKL 425 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~--~~sG~~~~~~~~s~~~l~~l 425 (765)
.+...|+|+.+++....... ...+....|||+|+.||-... +.|.++++...... ...|. ..++
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~--~nly~~~~~~~~~~~lT~dg~---------~~i~-- 87 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD--NNLYLRDLATGQETQLTTDGE---------PGIY-- 87 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET--TEEEEESSTTSEEEESES--T---------TTEE--
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec--CceEEEECCCCCeEEeccccc---------eeEE--
Confidence 46789999999775444333 677899999999999998875 46888887431100 00010 0000
Q ss_pred ecccc--------cccEEEEEEccCCCEEEEEeCC-CcEEEEeCCCCCC
Q 004255 426 HRGIT--------SATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGG 465 (765)
Q Consensus 426 ~rG~~--------~a~I~slaFSpDg~~Las~S~d-gTVhIwdl~~~gg 465 (765)
-|.. -..-..+.|||||++||....| ..|+.+.+..+..
T Consensus 88 -nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 88 -NGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp -ESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESS
T ss_pred -cCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCC
Confidence 0100 0001347899999999987655 4466666655443
No 337
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=86.59 E-value=17 Score=40.78 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=35.9
Q ss_pred CCEEEEEECCCCeEEEEEeCCCCEEEEEecC-CeEEEEeCCeEEEEECCCCceeEE
Q 004255 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-RIVAVGLATQIYCFDALTLENKFS 226 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~-~~LaV~~~~~I~iwD~~t~~~l~t 226 (765)
.+.+.-+|.++|+.+...++.+.. .+.... ++.++..+++++++|+.+++.+++
T Consensus 265 ~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 265 NGNLVALDLRSGQIVWKREYGSVN-DFAVDGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred CCeEEEEECCCCCEEEeecCCCcc-CcEEECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 467777888888887776654322 223333 445555667899999999876554
No 338
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.39 E-value=44 Score=39.09 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=42.6
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi 399 (765)
+.++.+|.|++||-...+....|++--.+|..+..+.||++|+..+. +.+-|-++
T Consensus 445 vvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~--tyLlLi~t 499 (644)
T KOG2395|consen 445 VVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK--TYLLLIDT 499 (644)
T ss_pred EEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc--cEEEEEEE
Confidence 35678999999998555556668888999999999999998754433 45777776
No 339
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.86 E-value=56 Score=41.62 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=58.7
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC--CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d--Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
..|+|||-+ |..-.+=..-..-=.+++|=|+|.++|+--.+ +..|.+|.-. |- .+--+.++
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN--------GL--------~hg~f~l~ 284 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN--------GL--------RHGEFVLP 284 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC--------Cc--------cccccccC
Confidence 689999976 33211111112222469999999999986432 2248888731 20 01112222
Q ss_pred cccccccEEEEEEccCCCEEEE---EeCCCcEEEEeCCCC
Q 004255 427 RGITSATIQDICFSHYSQWIAI---VSSKGTCHVFVLSPF 463 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las---~S~dgTVhIwdl~~~ 463 (765)
.-.....|..++|+.++..||+ .....-|.+|-+..|
T Consensus 285 ~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 285 FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 2112223889999999999999 444445999988765
No 340
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.37 E-value=1.2 Score=54.94 Aligned_cols=75 Identities=11% Similarity=0.088 Sum_probs=53.2
Q ss_pred CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-cccEEEEEEccCCCEEEEEeCCCcEEE
Q 004255 379 PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-SATIQDICFSHYSQWIAIVSSKGTCHV 457 (765)
Q Consensus 379 pdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~-~a~I~slaFSpDg~~Las~S~dgTVhI 457 (765)
-.+..+|.++..|+ +-.+|... .+..+.+|.. ...|.+++|+.||+.++.|=.+|-|.+
T Consensus 97 ~~~~~ivi~Ts~gh-vl~~d~~~-------------------nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v 156 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGH-VLLSDMTG-------------------NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTV 156 (1206)
T ss_pred eeeeeEEEEcCchh-hhhhhhhc-------------------ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEE
Confidence 35667888888665 77777732 1222333332 347999999999999999999999999
Q ss_pred EeCCCCCCCccccccc
Q 004255 458 FVLSPFGGDSGFQTLS 473 (765)
Q Consensus 458 wdl~~~gg~~~~~~h~ 473 (765)
||+...+....+..|.
T Consensus 157 ~D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 157 WDMHRAKILKVITEHG 172 (1206)
T ss_pred EEccCCcceeeeeecC
Confidence 9998755554444443
No 341
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=83.82 E-value=2.3 Score=47.03 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=44.6
Q ss_pred CCEEEEEECCCCeEEEEEeCCCCEEEEEecC----CeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP----RIVAVGL-ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~----~~LaV~~-~~~I~iwD~~t~~~l~tl~t 229 (765)
.+.|-+||+++++.+..+....++.+|.++. .++++.. ++.+++||+.|++.++++..
T Consensus 268 gteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 268 GTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 3779999999999999999888898888875 3444444 45799999999999998874
No 342
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=83.62 E-value=2.9 Score=32.30 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=25.6
Q ss_pred cEEEEEEccCC---CEEEEEeCCCcEEEEeCCC
Q 004255 433 TIQDICFSHYS---QWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 433 ~I~slaFSpDg---~~Las~S~dgTVhIwdl~~ 462 (765)
.|.++.|||+. .+|+.+-..|.|||+|+..
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 37899999855 4899999999999999983
No 343
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.50 E-value=0.65 Score=55.99 Aligned_cols=100 Identities=13% Similarity=0.145 Sum_probs=77.3
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC-EEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN-NINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt-~IrVWdi~~~~~~~~sG~~~~~~~~s~~~ 421 (765)
+-|...|.|+++++.+|.......+|.++|+-+.=+.||.++.|.|.-.. ..-+|++... + ..
T Consensus 1117 ~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~------~----------~~ 1180 (1516)
T KOG1832|consen 1117 AVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST------G----------GP 1180 (1516)
T ss_pred EeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc------c----------Cc
Confidence 35678899999999999999999999999999999999999888776333 4568987431 1 23
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g 464 (765)
.+.++ + -.++.||...++-+.|+....++|||+.+..
T Consensus 1181 ~Hsf~-e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1181 RHSFD-E-----DKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred ccccc-c-----cceeehhhhHHHHHhcccccceEEEecccCc
Confidence 33332 2 2458899888887888888889999998743
No 344
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.65 E-value=4.8 Score=45.64 Aligned_cols=113 Identities=15% Similarity=0.198 Sum_probs=75.6
Q ss_pred CCCCeEEEEECCCCc-EEEEe-ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC-cceEE
Q 004255 346 DNAGIVVVKDFVTRA-IISQF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS-SHVHL 422 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~-~i~~~-~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~-s~~~l 422 (765)
..+|.+.|+|-.... ....+ +-|.+||.++.+++.|....+... ++.|.-|......+... + ..+|.- +..-+
T Consensus 119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~-~gmVEyWs~e~~~qfPr-~--~l~~~~K~eTdL 194 (558)
T KOG0882|consen 119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI-SGMVEYWSAEGPFQFPR-T--NLNFELKHETDL 194 (558)
T ss_pred ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc-cceeEeecCCCcccCcc-c--cccccccccchh
Confidence 456788888866543 33334 359999999999999999988887 55799998753111000 0 011111 01223
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g 464 (765)
|.+..- .....++.|||||..+++-+.|.+|++|+.....
T Consensus 195 y~f~K~--Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 195 YGFPKA--KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred hccccc--ccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 333211 1247899999999999999999999999987643
No 345
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.09 E-value=6.3 Score=47.93 Aligned_cols=107 Identities=15% Similarity=0.110 Sum_probs=74.8
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCC-eEEEEECCCCCEEEEEEcCCC----EEEEEeCCCCcccCCCCCCccccC
Q 004255 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSP-ISALCFDPSGTLLVTASVYGN----NINIFRIMPSCMRSGSGNHKYDWN 416 (765)
Q Consensus 342 ~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~-IsaLaFSpdG~lLATaS~dGt----~IrVWdi~~~~~~~~sG~~~~~~~ 416 (765)
++-+..+|.|.+.+- .-+.+..|++|... |..|-...+-.+|++-+.|+. .++|||+.... +.
T Consensus 38 vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~-----~n------ 105 (933)
T KOG2114|consen 38 VVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD-----KN------ 105 (933)
T ss_pred EEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC-----CC------
Confidence 345677888777662 33455889999888 666655555589999998887 89999996521 11
Q ss_pred CcceEEEEEe-----cccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255 417 SSHVHLYKLH-----RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 417 ~s~~~l~~l~-----rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl 460 (765)
.+.+++++.+ -+....++.+|+.|.|-+.+|+|=.+|.|..+.=
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G 154 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG 154 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC
Confidence 1124454332 2322346899999999999999999999988753
No 346
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=82.07 E-value=3 Score=43.58 Aligned_cols=104 Identities=14% Similarity=0.123 Sum_probs=64.9
Q ss_pred ccCCCCeEEEEECCCCcEEEE-eccCCCCeEE-EEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255 344 DMDNAGIVVVKDFVTRAIISQ-FKAHTSPISA-LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~-~~aH~~~Isa-LaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~ 421 (765)
-+..+|.|.+|...-...... +..-..+|.+ +.--.++.+..++..+| .||.|++.++ ++
T Consensus 75 vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg-~ir~~n~~p~-----------------k~ 136 (238)
T KOG2444|consen 75 VGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDG-RIRACNIKPN-----------------KV 136 (238)
T ss_pred eecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCC-ceeeeccccC-----------------ce
Confidence 456789999998762111111 1111223333 22234566777888866 5999999873 23
Q ss_pred EEEEeccccc-ccEEEEEEccCCCEEEEE--eCCCcEEEEeCCCCCCCc
Q 004255 422 LYKLHRGITS-ATIQDICFSHYSQWIAIV--SSKGTCHVFVLSPFGGDS 467 (765)
Q Consensus 422 l~~l~rG~~~-a~I~slaFSpDg~~Las~--S~dgTVhIwdl~~~gg~~ 467 (765)
+- .+|.++ ..+..+.-+.-+++|+++ |.|.+++.|++.+.....
T Consensus 137 ~g--~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~ 183 (238)
T KOG2444|consen 137 LG--YVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDES 183 (238)
T ss_pred ee--eeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhccC
Confidence 22 234444 556667777778889888 999999999998765544
No 347
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=81.92 E-value=1.1e+02 Score=35.67 Aligned_cols=57 Identities=14% Similarity=-0.037 Sum_probs=38.8
Q ss_pred CEEEEEECCCCeEEEEEeCCCC-------E--EEEEecC-CeEEE-EeCCeEEEEECCCCceeEEEEe
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSS-------V--CMVRCSP-RIVAV-GLATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~-------V--~sV~~s~-~~LaV-~~~~~I~iwD~~t~~~l~tl~t 229 (765)
+.|.-.|.++|+.+...+.... + ..+.... ..|.+ ..++.|+.+|+.|++.++....
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 5788889999998887765332 1 1122322 44544 4567899999999999888754
No 348
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=81.68 E-value=22 Score=40.44 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=48.9
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC---CCCCCc-----------------------cccCCcceEEEE
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS---GSGNHK-----------------------YDWNSSHVHLYK 424 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~---~sG~~~-----------------------~~~~~s~~~l~~ 424 (765)
.|.++.|.++-.-||.+-..|. +-||........+ ...... .........++-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~Ge-Vv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGE-VVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS--EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCc-EEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 4788999998777888888776 6677654321110 000000 000011122222
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 425 l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
++- ..+.|++++.| |=-++|+|..+|++-|.|+.
T Consensus 82 ~~~--~~g~vtal~~S-~iGFvaigy~~G~l~viD~R 115 (395)
T PF08596_consen 82 LDA--KQGPVTALKNS-DIGFVAIGYESGSLVVIDLR 115 (395)
T ss_dssp E-----S-SEEEEEE--BTSEEEEEETTSEEEEEETT
T ss_pred eec--cCCcEeEEecC-CCcEEEEEecCCcEEEEECC
Confidence 221 24579999998 55599999999999999994
No 349
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=80.86 E-value=29 Score=32.43 Aligned_cols=87 Identities=11% Similarity=0.150 Sum_probs=57.9
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
..++.|..|+||+-. ..+..+..+ +.|.+|+-... ..++.|-..|+ |-||+-. .++
T Consensus 19 lvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGT-VGvY~~~-------------------~Rl 74 (111)
T PF14783_consen 19 LVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGT-VGVYDRS-------------------QRL 74 (111)
T ss_pred EEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCE-EEEEeCc-------------------cee
Confidence 357789999999854 567777665 45667666655 56888888786 9999852 366
Q ss_pred EEEecccccccEEEEEEc---cCC-CEEEEEeCCCcEE
Q 004255 423 YKLHRGITSATIQDICFS---HYS-QWIAIVSSKGTCH 456 (765)
Q Consensus 423 ~~l~rG~~~a~I~slaFS---pDg-~~Las~S~dgTVh 456 (765)
++.+.. ..+.++++. -|| .-|++|=.+|.|-
T Consensus 75 WRiKSK---~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSK---NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccC---CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 666532 235555543 334 3577888888764
No 350
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.83 E-value=3.9 Score=50.72 Aligned_cols=57 Identities=18% Similarity=0.369 Sum_probs=38.8
Q ss_pred ccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255 344 DMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~-~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~ 401 (765)
.+...|.|...|.... +....=..-++||++++|+.||++|+.|=.+| .|.+||+..
T Consensus 104 i~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G-~V~v~D~~~ 161 (1206)
T KOG2079|consen 104 IGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDG-HVTVWDMHR 161 (1206)
T ss_pred EEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCC-cEEEEEccC
Confidence 4445566777776542 11111112367999999999999998887756 499999965
No 351
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=80.79 E-value=1.7e+02 Score=36.97 Aligned_cols=96 Identities=11% Similarity=0.157 Sum_probs=67.5
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
...|+||++.+++.+..=..|..++.+|...-.|..+|.|..-+. |.+-..+.. .| .+++..|
T Consensus 847 n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~-----eg-----------~f~evAr 909 (1096)
T KOG1897|consen 847 NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGD-----EG-----------NFEEVAR 909 (1096)
T ss_pred CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEecc-----CC-----------ceEEeeh
Confidence 347999999998777776788899999999999999999987544 555443221 12 3566666
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
.....+++.+.+=.|..+| .+..+|.+.+-..+
T Consensus 910 D~~p~Wmtaveil~~d~yl-gae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 910 DYNPNWMTAVEILDDDTYL-GAENSGNLFTVRKD 942 (1096)
T ss_pred hhCccceeeEEEecCceEE-eecccccEEEEEec
Confidence 6566677788877665554 45667776665554
No 352
>PRK02888 nitrous-oxide reductase; Validated
Probab=80.70 E-value=13 Score=44.58 Aligned_cols=106 Identities=9% Similarity=0.045 Sum_probs=69.4
Q ss_pred CCeEEEEECCC-----CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 348 AGIVVVKDFVT-----RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 348 dG~V~IwDl~s-----~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
++.|.|.|..+ .+.+..+.--. ....|++||||++++.++.-..++-|.|+......- .+ ..+.. ....
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~-~~--~~~~~--~~vv 368 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF-DG--KIKPR--DAVV 368 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh-hc--cCCcc--ceEE
Confidence 46799999988 45566665332 335789999999999998877789999996521000 00 00000 0122
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
.+..-|.. -...+|.++|+...+--.|..|-.|++..
T Consensus 369 aevevGlG---PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 369 AEPELGLG---PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EeeccCCC---cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22222322 23578999999888888899999999976
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=79.51 E-value=1.3e+02 Score=34.92 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=37.1
Q ss_pred CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255 381 GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 381 G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl 460 (765)
|.+|+..+. + .|.+||+.+ + ..+.++. -..|..+.||+||+++|..+.+ ++.|++.
T Consensus 117 G~LL~~~~~-~-~i~~yDw~~-------~----------~~i~~i~----v~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 117 GNLLGVKSS-D-FICFYDWET-------G----------KLIRRID----VSAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp SSSEEEEET-T-EEEEE-TTT-------------------EEEEES----S-E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred CcEEEEECC-C-CEEEEEhhH-------c----------ceeeEEe----cCCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 888888877 4 599999965 2 3444442 2248899999999999999866 6777765
Q ss_pred CC
Q 004255 461 SP 462 (765)
Q Consensus 461 ~~ 462 (765)
+.
T Consensus 173 ~~ 174 (443)
T PF04053_consen 173 NL 174 (443)
T ss_dssp -H
T ss_pred cc
Confidence 43
No 354
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=78.84 E-value=1.1e+02 Score=33.71 Aligned_cols=52 Identities=19% Similarity=0.299 Sum_probs=36.4
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~ 400 (765)
.|.|..+|. .+..+..+..|-.-=+.|+|||||+.|..+......|.-|++.
T Consensus 142 ~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 142 TGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred cceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 345555554 4566666666555557899999999988888866667777764
No 355
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=78.66 E-value=1.3e+02 Score=34.67 Aligned_cols=67 Identities=9% Similarity=0.089 Sum_probs=34.2
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc--------------cccEE
Q 004255 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT--------------SATIQ 435 (765)
Q Consensus 370 ~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~--------------~a~I~ 435 (765)
.-|+.|.+|.|.++|..+..-...||-|||.... ..+.+.+.+-|-. ..-.+
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~--------------~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq 377 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPF--------------NPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ 377 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTT--------------S-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCC--------------CCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence 4578899999999998888766679999996521 1133333332210 01136
Q ss_pred EEEEccCCCEEEEEe
Q 004255 436 DICFSHYSQWIAIVS 450 (765)
Q Consensus 436 slaFSpDg~~Las~S 450 (765)
-|..|-||+.|...+
T Consensus 378 MvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 378 MVQLSLDGKRLYVTN 392 (461)
T ss_dssp -EEE-TTSSEEEEE-
T ss_pred eEEEccCCeEEEEEe
Confidence 688999999887664
No 356
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.81 E-value=1.1e+02 Score=33.53 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=38.5
Q ss_pred EEEEECCCCeEEEEEeCCCCEEEEEecC---CeEEEEeC--CeEEEEECCCCceeEEEEe
Q 004255 175 VRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLA--TQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 175 V~lWdlktg~~v~tL~~~s~V~sV~~s~---~~LaV~~~--~~I~iwD~~t~~~l~tl~t 229 (765)
+-.++. .|+++..+..+..-..|.++| +-|+.+-. .--++||..+.+.+.++..
T Consensus 51 ~a~~~e-aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s 109 (366)
T COG3490 51 AATLSE-AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS 109 (366)
T ss_pred EEEEcc-CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec
Confidence 344444 589999998888888999887 44444431 2389999998887777653
No 357
>PRK13616 lipoprotein LpqB; Provisional
Probab=77.73 E-value=12 Score=44.94 Aligned_cols=93 Identities=11% Similarity=0.147 Sum_probs=54.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE--EEe
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY--KLH 426 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~--~l~ 426 (765)
..+.+++... .....+.+. ..+.-.|+|||..|++.+.....+++.+-.. .+ .++ .+.
T Consensus 379 s~Lwv~~~gg-~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~------~g-----------ql~~~~vd 438 (591)
T PRK13616 379 SSLWVGPLGG-VAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA------TG-----------QLARTPVD 438 (591)
T ss_pred eEEEEEeCCC-cceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCC------Cc-----------eEEEEecc
Confidence 3566666532 222223333 3777899999999999987435555544311 01 222 221
Q ss_pred cccc----cccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 427 RGIT----SATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 427 rG~~----~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
.|.. ...|.++.|||||++||... +|.|+|=-+..
T Consensus 439 ~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr 477 (591)
T PRK13616 439 ASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQ 477 (591)
T ss_pred CchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEe
Confidence 1111 23599999999999999877 57666644443
No 358
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.28 E-value=38 Score=41.59 Aligned_cols=92 Identities=15% Similarity=0.267 Sum_probs=55.2
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE-EEE----EecccccccEEEEEEccCC-
Q 004255 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH-LYK----LHRGITSATIQDICFSHYS- 443 (765)
Q Consensus 370 ~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~-l~~----l~rG~~~a~I~slaFSpDg- 443 (765)
-.|..|.+||+|++||-++..| |-|-.+ |...+ ..|. ..+-.....+ .+. +.+......|..+.|+|.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~--v~V~~L-P~r~g-~~~~-~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG--VVVLEL-PRRWG-KNGE-FEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE 159 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc--EEEEEe-ccccC-cccc-ccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC
Confidence 3678899999999999999855 555555 21000 0000 0000000001 011 1111223469999999884
Q ss_pred --CEEEEEeCCCcEEEEeCCCCCCC
Q 004255 444 --QWIAIVSSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 444 --~~Las~S~dgTVhIwdl~~~gg~ 466 (765)
..|++=++|+++++||+.....+
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred CCCeEEEEecCCEEEEEecCCCCCC
Confidence 89999999999999999754443
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=76.57 E-value=37 Score=38.21 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=65.9
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc--CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 004255 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV--YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~--dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~ 424 (765)
.+..|.+.|..+.+....+.--. .-..++|+|+|+.+..+.. ....+-+.|..+ + ..+..
T Consensus 94 ~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-------~----------~~~~~ 155 (381)
T COG3391 94 DSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-------N----------KVTAT 155 (381)
T ss_pred CCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-------C----------eEEEE
Confidence 36789999988877766654322 3357999999988877766 245677777644 1 23444
Q ss_pred EecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCC
Q 004255 425 LHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSP 462 (765)
Q Consensus 425 l~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~ 462 (765)
...|.. . ..++|+|||+.+.+.. .++++.++|.+.
T Consensus 156 ~~vG~~--P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 156 IPVGNT--P-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred EecCCC--c-ceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence 555543 2 7899999999665554 789999999543
No 360
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=76.29 E-value=5.8 Score=43.07 Aligned_cols=87 Identities=20% Similarity=0.321 Sum_probs=50.7
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc---CCcceEEEEEecccc-cccEEEEEEccCC--
Q 004255 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW---NSSHVHLYKLHRGIT-SATIQDICFSHYS-- 443 (765)
Q Consensus 370 ~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~---~~s~~~l~~l~rG~~-~a~I~slaFSpDg-- 443 (765)
.-|+++.|+..|.+||||.. |+-+.+|.-.... |+ .+.. -+++..-+....... ...|..|.|-.++
T Consensus 27 d~ItaVefd~tg~YlatGDk-gGRVvlfer~~s~-----~c-eykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r 99 (460)
T COG5170 27 DKITAVEFDETGLYLATGDK-GGRVVLFEREKSY-----GC-EYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR 99 (460)
T ss_pred ceeeEEEeccccceEeecCC-CceEEEeeccccc-----cc-chhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence 46899999999999999988 4457788643210 11 0000 000000011000000 1247778777665
Q ss_pred CEEEEEeCCCcEEEEeCCCC
Q 004255 444 QWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 444 ~~Las~S~dgTVhIwdl~~~ 463 (765)
..+..++.|.||+||.+-..
T Consensus 100 ~hFLlstNdktiKlWKiyek 119 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEK 119 (460)
T ss_pred ceEEEecCCceeeeeeeecc
Confidence 34667789999999999654
No 361
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=76.17 E-value=1e+02 Score=34.19 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=38.4
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeCCeEEEEECCCCc
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLE 222 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~ 222 (765)
+.+.+||+.+++..........+....++| +.||...++.|++++..+++
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~ 74 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ 74 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSE
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCC
Confidence 579999999987665444456777888887 78888888999999988773
No 362
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=75.91 E-value=13 Score=41.09 Aligned_cols=114 Identities=11% Similarity=0.151 Sum_probs=70.4
Q ss_pred CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC-c----------------------ccCCCCCCcc-
Q 004255 358 TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS-C----------------------MRSGSGNHKY- 413 (765)
Q Consensus 358 s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~-~----------------------~~~~sG~~~~- 413 (765)
....+....+|..+|.++-|+-.-+++++++.| +. -.|-.... + .+...|....
T Consensus 103 km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~d-k~-~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~l 180 (404)
T KOG1409|consen 103 KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKD-KQ-FAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITML 180 (404)
T ss_pred hcchhhhhhhhhcceeeEEecCCceeEEEeccc-cc-eEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEE
Confidence 344555667888999999999888888888884 32 24533211 0 0000010000
Q ss_pred c-cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCc-ccccccCC
Q 004255 414 D-WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS-GFQTLSSQ 475 (765)
Q Consensus 414 ~-~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~-~~~~h~~~ 475 (765)
- .......++++. |+ .+.|++++|.+..+.|.++..|..+-+|||.-..+.. .++.|+..
T Consensus 181 r~~~~~~~~i~~~~-~h-~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~k 242 (404)
T KOG1409|consen 181 KLEQNGCQLITTFN-GH-TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDK 242 (404)
T ss_pred EEeecCCceEEEEc-Cc-ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhh
Confidence 0 000112334443 43 3569999999999999999999999999998766643 45677654
No 363
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=75.44 E-value=20 Score=40.31 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=62.6
Q ss_pred CCcccccccccc-ccCCCCeEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCC----------CEEEEEeC
Q 004255 332 NSVWKVGRHAGA-DMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYG----------NNINIFRI 399 (765)
Q Consensus 332 s~~~~~~~~~~~-~~~~dG~V~IwDl~s~~~i~~-~~aH~~~IsaLaFSpdG~lLATaS~dG----------t~IrVWdi 399 (765)
+++++..+.... .|+...+++|+|+.+++.+.. |..- .-..++|.+||+.|.-...+. ..|..|++
T Consensus 132 Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~ 209 (414)
T PF02897_consen 132 SPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKL 209 (414)
T ss_dssp TTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEET
T ss_pred CCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEEC
Confidence 344444333332 233446899999999987653 3321 112399999999877665433 34666666
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEeccccccc-EEEEEEccCCCEEEEEeCCCc--EEEEeCC
Q 004255 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT-IQDICFSHYSQWIAIVSSKGT--CHVFVLS 461 (765)
Q Consensus 400 ~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~-I~slaFSpDg~~Las~S~dgT--VhIwdl~ 461 (765)
.+.. .....+++-. .... ..++..|+|++||+..+..++ -.+|=+.
T Consensus 210 gt~~-------------~~d~lvfe~~---~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d 258 (414)
T PF02897_consen 210 GTPQ-------------SEDELVFEEP---DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLD 258 (414)
T ss_dssp TS-G-------------GG-EEEEC-T---TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEE
T ss_pred CCCh-------------HhCeeEEeec---CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEe
Confidence 3310 0113444432 2233 678999999999887655544 3444443
No 364
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=72.91 E-value=5.9 Score=48.04 Aligned_cols=65 Identities=23% Similarity=0.346 Sum_probs=52.0
Q ss_pred cccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 004255 335 WKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (765)
Q Consensus 335 ~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~ 400 (765)
|.+-...++.+-.-|.+.+|...+.+.-..-..|+.+|.-|.|||+|+.|+|+..-| .+.+|...
T Consensus 67 WHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g-~v~lwr~d 131 (1416)
T KOG3617|consen 67 WHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPG-SVHLWRYD 131 (1416)
T ss_pred cChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCc-eeEEEEee
Confidence 444333445566778999999988776666678999999999999999999999866 58999764
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=72.49 E-value=27 Score=43.21 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=60.5
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCC-eEEEEEC-------CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 004255 346 DNAGIVVVKDFVTRAIISQFKAHTSP-ISALCFD-------PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~~i~~~~aH~~~-IsaLaFS-------pdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~ 417 (765)
.....|.-.|+..|+++...+.|... |..++=+ +..++|.. . ++.+-.||.+-. |. ...+
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGl--s-~n~lfriDpR~~------~~-k~v~-- 568 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGL--S-DNSLFRIDPRLS------GN-KLVD-- 568 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEE--C-CCceEEeccCCC------CC-ceee--
Confidence 35567888899999999999988654 6554422 33334432 2 334666776431 21 0000
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (765)
Q Consensus 418 s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwd 459 (765)
...+.+.+ ....+|++-+.+| +||+||.+|-|+|||
T Consensus 569 --~~~k~Y~~---~~~Fs~~aTt~~G-~iavgs~~G~IRLyd 604 (794)
T PF08553_consen 569 --SQSKQYSS---KNNFSCFATTEDG-YIAVGSNKGDIRLYD 604 (794)
T ss_pred --cccccccc---CCCceEEEecCCc-eEEEEeCCCcEEeec
Confidence 01112222 2357889988888 789999999999998
No 366
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=72.43 E-value=8.7 Score=29.76 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=23.5
Q ss_pred CCeEEEEECCCC---CEEEEEEcCCCEEEEEeCCC
Q 004255 370 SPISALCFDPSG---TLLVTASVYGNNINIFRIMP 401 (765)
Q Consensus 370 ~~IsaLaFSpdG---~lLATaS~dGt~IrVWdi~~ 401 (765)
+.|.++.|||+. .+||-+-..|. |.|+|++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence 368899999854 48887766564 99999963
No 367
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=71.98 E-value=12 Score=27.36 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=20.9
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCC--CEEEEE
Q 004255 367 AHTSPISALCFDPSGTLLVTASVYG--NNINIF 397 (765)
Q Consensus 367 aH~~~IsaLaFSpdG~lLATaS~dG--t~IrVW 397 (765)
.....-..-+|||||+.|+-++..+ +...||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445667889999999999888755 444554
No 368
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=71.32 E-value=4.8 Score=47.90 Aligned_cols=95 Identities=14% Similarity=0.261 Sum_probs=67.1
Q ss_pred ccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255 344 DMDNAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~~~--aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~ 421 (765)
+.+.+|.|.||-+-.+.-...+. ...+-|.+|+|+.||+.++.+-.||. |-|=.+. | .+
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGa-vIVGsvd--------G----------NR 148 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGA-VIVGSVD--------G----------NR 148 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCC-EEEEeec--------c----------ce
Confidence 45789999999987775332221 24567899999999999998888776 4443331 2 12
Q ss_pred EE--EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 422 LY--KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 422 l~--~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
++ +|+ |.. ...+.||+|.+.+..+-..|.+||||..
T Consensus 149 IwgKeLk-g~~---l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 149 IWGKELK-GQL---LAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred ecchhcc-hhe---ccceeecccHHHHHhhhcCCcEEEeccc
Confidence 22 222 322 3468899999998888899999999864
No 369
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=71.22 E-value=22 Score=34.36 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=41.1
Q ss_pred CEEEEEECC--------CCeEEEEEeCCCCEEEEEec-------CCeEEEEeCCeEEEEECCCCceeE
Q 004255 173 TAVRFYSFQ--------SHCYEHVLRFRSSVCMVRCS-------PRIVAVGLATQIYCFDALTLENKF 225 (765)
Q Consensus 173 ~tV~lWdlk--------tg~~v~tL~~~s~V~sV~~s-------~~~LaV~~~~~I~iwD~~t~~~l~ 225 (765)
++|.|++.. ....+..|.+...|.+++.- +..|++|....+-+||+.....++
T Consensus 20 gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~F 87 (136)
T PF14781_consen 20 GKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLF 87 (136)
T ss_pred CEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhh
Confidence 578888765 44578889999999888643 368999999999999998765443
No 370
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=70.34 E-value=30 Score=39.40 Aligned_cols=83 Identities=18% Similarity=0.313 Sum_probs=53.6
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe------cccccccE
Q 004255 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH------RGITSATI 434 (765)
Q Consensus 361 ~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~------rG~~~a~I 434 (765)
+...+....++|++|+.|.=| ++|.|..+| .+-|.|++ |- .-+|.-. .......|
T Consensus 78 P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G-~l~viD~R--------GP---------avI~~~~i~~~~~~~~~~~~v 138 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG-FVAIGYESG-SLVVIDLR--------GP---------AVIYNENIRESFLSKSSSSYV 138 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS-EEEEEETTS-EEEEEETT--------TT---------EEEEEEEGGG--T-SS----E
T ss_pred chhheeccCCcEeEEecCCCc-EEEEEecCC-cEEEEECC--------CC---------eEEeeccccccccccccccCe
Confidence 444556668999999998666 899999867 58999995 21 3444321 11123458
Q ss_pred EEEEEc-----cCC---CEEEEEeCCCcEEEEeCCC
Q 004255 435 QDICFS-----HYS---QWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 435 ~slaFS-----pDg---~~Las~S~dgTVhIwdl~~ 462 (765)
+++.|+ .|+ -.|.+|++.|++.+|.|-+
T Consensus 139 t~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 139 TSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp EEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred eEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEec
Confidence 888887 233 4789999999999999975
No 371
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=70.19 E-value=47 Score=32.15 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=43.3
Q ss_pred CCCEEEEEECCCCeEEEEEeCCCCEEEEEec------CCeEEEEeCCeEEEEECCCCceeEEEE
Q 004255 171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCS------PRIVAVGLATQIYCFDALTLENKFSVL 228 (765)
Q Consensus 171 ~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s------~~~LaV~~~~~I~iwD~~t~~~l~tl~ 228 (765)
+++.|..||+.....+-.-+.++.|.+|.+- ..++++|..-.|..||..-.|..+++.
T Consensus 71 t~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 71 TQTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred ccceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 3578999999988766555667778777762 356667765679999998887777764
No 372
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=69.90 E-value=9.9 Score=27.82 Aligned_cols=26 Identities=15% Similarity=0.335 Sum_probs=19.4
Q ss_pred cEEEEEEccCCCEEEEEeCC---CcEEEE
Q 004255 433 TIQDICFSHYSQWIAIVSSK---GTCHVF 458 (765)
Q Consensus 433 ~I~slaFSpDg~~Las~S~d---gTVhIw 458 (765)
.....+|||||++|+-++.. |..+||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 46778999999998877765 566666
No 373
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=67.75 E-value=25 Score=38.52 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=41.4
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (765)
Q Consensus 369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las 448 (765)
.+.+..+..++||+++|.++. |....-||- |. .....+. |. ....|++|.|+||+...++
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~-G~~~~s~~~---------G~-------~~w~~~~--r~-~~~riq~~gf~~~~~lw~~ 203 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSR-GNFYSSWDP---------GQ-------TTWQPHN--RN-SSRRIQSMGFSPDGNLWML 203 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETT-SSEEEEE-T---------T--------SS-EEEE-----SSS-EEEEEE-TTS-EEEE
T ss_pred cceeEeEEECCCCcEEEEECc-ccEEEEecC---------CC-------ccceEEc--cC-ccceehhceecCCCCEEEE
Confidence 367888999999999998877 988888874 31 1133333 33 3357999999999876654
Q ss_pred EeCCCcEEEEe
Q 004255 449 VSSKGTCHVFV 459 (765)
Q Consensus 449 ~S~dgTVhIwd 459 (765)
+ ..|-++.=+
T Consensus 204 ~-~Gg~~~~s~ 213 (302)
T PF14870_consen 204 A-RGGQIQFSD 213 (302)
T ss_dssp E-TTTEEEEEE
T ss_pred e-CCcEEEEcc
Confidence 4 777776644
No 374
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=67.68 E-value=72 Score=35.94 Aligned_cols=94 Identities=12% Similarity=0.197 Sum_probs=63.4
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE--
Q 004255 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK-- 424 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~-- 424 (765)
.++++.+.|..+.+.+..+..-..| ..++|+|+|+.+..+..++..|-++|.... .+.+
T Consensus 138 ~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~------------------~v~~~~ 198 (381)
T COG3391 138 GNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN------------------SVVRGS 198 (381)
T ss_pred CCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc------------------ceeccc
Confidence 4678999999999888876654456 789999999988777766677999996431 1111
Q ss_pred ----EecccccccEEEEEEccCCCEEEEEeCC---CcEEEEeCCC
Q 004255 425 ----LHRGITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSP 462 (765)
Q Consensus 425 ----l~rG~~~a~I~slaFSpDg~~Las~S~d---gTVhIwdl~~ 462 (765)
...+. .-..++++|||+++.+.-.. +++-+.|...
T Consensus 199 ~~~~~~~~~---~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 199 VGSLVGVGT---GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred cccccccCC---CCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence 11111 13568999999976555443 3666555543
No 375
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=67.31 E-value=25 Score=39.53 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=40.1
Q ss_pred CeEEEEECCCCCEEEEE-EcCC---CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 004255 371 PISALCFDPSGTLLVTA-SVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATa-S~dG---t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L 446 (765)
.+...++||||++||-+ +..| ..++|+|+.+ | ..+-..-.+ ..-..++|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-------g----------~~l~d~i~~---~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-------G----------KFLPDGIEN---PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT-------T----------EEEEEEEEE---EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCC-------C----------cCcCCcccc---cccceEEEeCCCCEE
Confidence 44568999999999865 4433 3699999965 3 233221111 112349999999887
Q ss_pred EEEeCCC
Q 004255 447 AIVSSKG 453 (765)
Q Consensus 447 as~S~dg 453 (765)
.....+.
T Consensus 185 ~y~~~~~ 191 (414)
T PF02897_consen 185 FYTRFDE 191 (414)
T ss_dssp EEEECST
T ss_pred EEEEeCc
Confidence 7666544
No 376
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=66.19 E-value=61 Score=39.13 Aligned_cols=102 Identities=13% Similarity=0.191 Sum_probs=64.2
Q ss_pred CCeEEEEECCCCcEEEEec-cCCCCeEEEEEC--CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 004255 348 AGIVVVKDFVTRAIISQFK-AHTSPISALCFD--PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFS--pdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~ 424 (765)
...+.|||...+.....-. ...++|..+.|. |||+.+.+-+- ++.|.|+.-...-..+ ....| ..+.+
T Consensus 50 ~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf-~~~v~l~~Q~R~dy~~----~~p~w----~~i~~ 120 (631)
T PF12234_consen 50 RSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGF-PHHVLLYTQLRYDYTN----KGPSW----APIRK 120 (631)
T ss_pred CCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEc-CcEEEEEEccchhhhc----CCccc----ceeEE
Confidence 3479999998876433221 446789888875 79999988888 5668888542210000 00112 23333
Q ss_pred Ee-cccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255 425 LH-RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 425 l~-rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl 460 (765)
+. +.++...|.+..|-+||..++.+ .+.++||+-
T Consensus 121 i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 121 IDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred EEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 31 45666789999999999766544 345788864
No 377
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=65.38 E-value=2.6e+02 Score=32.23 Aligned_cols=52 Identities=12% Similarity=0.265 Sum_probs=32.4
Q ss_pred CCCEEEEEECC--CCe----------EEEEEeCCCCEEEEEec-------CCeEEE-EeCCeEEEEECCCCc
Q 004255 171 SPTAVRFYSFQ--SHC----------YEHVLRFRSSVCMVRCS-------PRIVAV-GLATQIYCFDALTLE 222 (765)
Q Consensus 171 ~p~tV~lWdlk--tg~----------~v~tL~~~s~V~sV~~s-------~~~LaV-~~~~~I~iwD~~t~~ 222 (765)
.|+++.||.+. .|. .+-+..|....+++.+- +..|+| +.|+++.+|+-...-
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~ 166 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA 166 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE
Confidence 37899999883 222 11222355566666642 246666 788999999976653
No 378
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=62.29 E-value=53 Score=37.21 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=21.3
Q ss_pred CccccEEEEcCCccEEEEecccCCCC
Q 004255 565 NSLEHLLVYTPSGYVVQHELLPSIGM 590 (765)
Q Consensus 565 ~~~~~Llv~s~~G~l~~y~l~p~~g~ 590 (765)
....+|||+-.+-=+-.|..+|..+.
T Consensus 217 De~g~LYvgEE~~GIW~y~Aep~~~~ 242 (381)
T PF02333_consen 217 DETGRLYVGEEDVGIWRYDAEPEGGN 242 (381)
T ss_dssp TTTTEEEEEETTTEEEEEESSCCC-S
T ss_pred cccCCEEEecCccEEEEEecCCCCCC
Confidence 45678999999999999999997654
No 379
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=61.61 E-value=2.9e+02 Score=31.53 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=38.9
Q ss_pred CCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEeCCeEEEEECCC
Q 004255 172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLATQIYCFDALT 220 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~~~~I~iwD~~t 220 (765)
|..|+||+. .|+.+.++.++ +.|..+.++. ++|+|..++.+++||+..
T Consensus 60 p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 60 PNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred CcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCC
Confidence 447999999 57888888875 6899999977 577777788999999863
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=61.00 E-value=42 Score=40.35 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=59.0
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE---EE
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL---YK 424 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l---~~ 424 (765)
.+.+.+.++..+.... .....|..+.|||||+.||-... |+ |.|=-+... ..|. ..+ .+
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~-g~-v~Va~Vvr~----~~G~---------~~l~~~~~ 490 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG-GK-VYLAVVEQT----EDGQ---------YALTNPRE 490 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC-CE-EEEEEEEeC----CCCc---------eeecccEE
Confidence 3556555776555433 33567999999999999988774 53 555333221 1121 122 22
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 425 l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
+..+.. ..+.+++|..|+.. +++..++...+|.++-.|.
T Consensus 491 l~~~l~-~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~ 529 (591)
T PRK13616 491 VGPGLG-DTAVSLDWRTGDSL-VVGRSDPEHPVWYVNLDGS 529 (591)
T ss_pred eecccC-CccccceEecCCEE-EEEecCCCCceEEEecCCc
Confidence 322221 23578999999985 4666667677888776544
No 381
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=60.10 E-value=68 Score=35.26 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=44.8
Q ss_pred CeEEEEECCCCCEEEEEEc---CCC-----EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255 371 PISALCFDPSGTLLVTASV---YGN-----NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~---dGt-----~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD 442 (765)
..+.+..+|+|.+-++-.. .+. .-.||.+.+. | .+.++..+. -..=..|+||||
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~------g-----------~~~~l~~~~-~~~~NGla~SpD 173 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD------G-----------GVVRLLDDD-LTIPNGLAFSPD 173 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC------C-----------CEEEeecCc-EEecCceEECCC
Confidence 4567888999998876544 011 1135554331 1 122222220 011257999999
Q ss_pred CCEEEEE-eCCCcEEEEeCCCCCCC
Q 004255 443 SQWIAIV-SSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 443 g~~Las~-S~dgTVhIwdl~~~gg~ 466 (765)
++.|..+ |..+.||-|++....+.
T Consensus 174 g~tly~aDT~~~~i~r~~~d~~~g~ 198 (307)
T COG3386 174 GKTLYVADTPANRIHRYDLDPATGP 198 (307)
T ss_pred CCEEEEEeCCCCeEEEEecCcccCc
Confidence 9766555 45588999999864443
No 382
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=57.96 E-value=57 Score=35.15 Aligned_cols=57 Identities=7% Similarity=0.056 Sum_probs=44.4
Q ss_pred CCEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEE
Q 004255 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVL 228 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~ 228 (765)
.++..+||.++-+.+.++.++..=+.++.+.+.|..+. .++|+++|..+++...++.
T Consensus 109 ~~~~f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred CCeEEEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEE
Confidence 36899999999999999999999999998887777665 4689999999999888776
No 383
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=57.14 E-value=3.8e+02 Score=33.05 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=49.5
Q ss_pred CCeEEEEEC--CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC---C
Q 004255 370 SPISALCFD--PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS---Q 444 (765)
Q Consensus 370 ~~IsaLaFS--pdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg---~ 444 (765)
..++.|++. ...+++|.++. ...|.||-......+. .+.... .+...|-+|+|-++. .
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsN-s~~VTVFaf~l~~~r~-------------~~~~s~---~~~hNIP~VSFl~~~~d~~ 226 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSN-SQEVTVFAFALVDERF-------------YHVPSH---QHSHNIPNVSFLDDDLDPN 226 (717)
T ss_pred CceeEEEEEecCcceEEEEecC-CceEEEEEEecccccc-------------cccccc---ccccCCCeeEeecCCCCCc
Confidence 367889998 77777776666 7779998764310000 000011 122358999997654 2
Q ss_pred ---EEEEEeCCCcEEEEeCC
Q 004255 445 ---WIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 445 ---~Las~S~dgTVhIwdl~ 461 (765)
+|++++-.|.+-+|++.
T Consensus 227 G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 227 GHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cceEEEEEeccCcEEEEEEE
Confidence 89999999999999983
No 384
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=56.88 E-value=1.5e+02 Score=34.25 Aligned_cols=107 Identities=15% Similarity=0.236 Sum_probs=53.0
Q ss_pred CCCCeEEEEECCCCcEEEEeccC-CC-CeEEEEE--CCCCCEEEEEEcCCC-EEEEEeCCCCcccCCCCCCccccCCcce
Q 004255 346 DNAGIVVVKDFVTRAIISQFKAH-TS-PISALCF--DPSGTLLVTASVYGN-NINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~~i~~~~aH-~~-~IsaLaF--SpdG~lLATaS~dGt-~IrVWdi~~~~~~~~sG~~~~~~~~s~~ 420 (765)
.....+.+||+.+.+.+++|.-- .+ -...|.| +|+..+=.+++.-.. ..++|.... | .|.+ +
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~-------g----~W~a--~ 285 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD-------G----EWAA--E 285 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET-------T----EEEE--E
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC-------C----Ceee--e
Confidence 34568999999999999988632 22 2345666 455665444444233 233333211 2 1221 2
Q ss_pred EEEEEec---------------ccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCC
Q 004255 421 HLYKLHR---------------GITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGG 465 (765)
Q Consensus 421 ~l~~l~r---------------G~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~gg 465 (765)
++.++.- |....-|++|..|.|.+||..+. .+|.++.|||.....
T Consensus 286 kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 286 KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 2222210 11124589999999999997776 589999999987543
No 385
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=54.74 E-value=1.2e+02 Score=33.19 Aligned_cols=38 Identities=26% Similarity=0.549 Sum_probs=30.4
Q ss_pred eEEEEEecCcEEEEEccCC-CcceEeeeeccCCEEEEEEec
Q 004255 76 QVLLLGYQNGFQVLDVEDA-SNFNELVSKRDGPVSFLQMQP 115 (765)
Q Consensus 76 ~vL~~G~~~G~qVWdv~~~-g~~~ells~~dg~V~~v~~lP 115 (765)
+.|++|++.|+-+.|++.. ++..++++.+ +|..+++++
T Consensus 14 ~~lL~GTe~Gly~~~~~~~~~~~~kl~~~~--~v~q~~v~~ 52 (302)
T smart00036 14 KWLLVGTEEGLYVLNISDQPGTLEKLIGRR--SVTQIWVLE 52 (302)
T ss_pred cEEEEEeCCceEEEEcccCCCCeEEecCcC--ceEEEEEEh
Confidence 5799999999999988543 5677777764 699999985
No 386
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=54.71 E-value=2.3e+02 Score=30.83 Aligned_cols=43 Identities=9% Similarity=-0.152 Sum_probs=34.0
Q ss_pred EEEeCCCCEEEEEecCCeEEEEeCCeEEEEECCCCceeEEEEe
Q 004255 187 HVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 187 ~tL~~~s~V~sV~~s~~~LaV~~~~~I~iwD~~t~~~l~tl~t 229 (765)
..+.+.....++++...+|.+-..+.|.++++.+++..+++..
T Consensus 238 ~~l~w~~~p~~~~~~~pyll~~~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 238 PILHWEFMPESFAYHSPYLLAFHDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred eEEEcCCcccEEEEECCEEEEEcCCcEEEEECCCCceEEEEec
Confidence 4567777888888877666666677899999999998888753
No 387
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=53.53 E-value=1e+02 Score=30.69 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=25.2
Q ss_pred cEEEEEEccCC------CEEEEEeCCCcEEEEeCCC
Q 004255 433 TIQDICFSHYS------QWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 433 ~I~slaFSpDg------~~Las~S~dgTVhIwdl~~ 462 (765)
.|.+++|||-| -.||+-+.++.+.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 58899999954 3789999999999998653
No 388
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=52.66 E-value=1.6e+02 Score=31.09 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=46.6
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEe-CCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFR-IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWd-i~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~ 449 (765)
.+..-+|+++|.+.+.... ....+++. ... |. .....+........|.++.+||||..+|..
T Consensus 67 ~l~~PS~d~~g~~W~v~~~-~~~~~~~~~~~~-------g~---------~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v 129 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDG-SGGVRVVRDSAS-------GT---------GEPVEVDWPGLRGRITALRVSPDGTRVAVV 129 (253)
T ss_pred ccccccccCCCCEEEEEcC-CCceEEEEecCC-------Cc---------ceeEEecccccCCceEEEEECCCCcEEEEE
Confidence 6778899999888776665 44466664 211 11 111122111111169999999999999888
Q ss_pred eC---CCcEEEEeCCC
Q 004255 450 SS---KGTCHVFVLSP 462 (765)
Q Consensus 450 S~---dgTVhIwdl~~ 462 (765)
.. ++.|.|=.|..
T Consensus 130 ~~~~~~~~v~va~V~r 145 (253)
T PF10647_consen 130 VEDGGGGRVYVAGVVR 145 (253)
T ss_pred EecCCCCeEEEEEEEe
Confidence 73 46777776654
No 389
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=52.20 E-value=63 Score=41.21 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=50.5
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (765)
Q Consensus 369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las 448 (765)
...|.++.|--++.-++.+...|..| +-|..+ ...+.- |.....|.+++||||.+++|.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~ii-lvd~et-------------------~~~eiv-g~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDII-LVDPET-------------------LELEIV-GNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEE-EEcccc-------------------cceeee-eeccCceEEEeecCCCcEEEE
Confidence 35788899999999888888878744 446533 112221 333345999999999999999
Q ss_pred EeCCCcEEEE
Q 004255 449 VSSKGTCHVF 458 (765)
Q Consensus 449 ~S~dgTVhIw 458 (765)
.+.++|+-+-
T Consensus 127 iT~~~tll~m 136 (1265)
T KOG1920|consen 127 ITGRQTLLFM 136 (1265)
T ss_pred EeCCcEEEEE
Confidence 9999998653
No 390
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=52.05 E-value=11 Score=46.13 Aligned_cols=108 Identities=13% Similarity=0.175 Sum_probs=60.4
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEE-----------ECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 004255 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALC-----------FDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (765)
Q Consensus 345 ~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLa-----------FSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~ 413 (765)
+..+|+|+|....... ...|++|...+..++ +||||+.||+++.||. ++.|.+--. |.
T Consensus 201 ~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiyi~------g~--- 269 (1283)
T KOG1916|consen 201 GLKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIYIT------GK--- 269 (1283)
T ss_pred ccCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeeeee------cc---
Confidence 4567777776554322 245667765554333 7999999999999885 888876321 11
Q ss_pred ccCCcceEEEEEecccccccEEEEEEccC-------C--CEEEEEeCCC-cEEEEeCCCCCCCc
Q 004255 414 DWNSSHVHLYKLHRGITSATIQDICFSHY-------S--QWIAIVSSKG-TCHVFVLSPFGGDS 467 (765)
Q Consensus 414 ~~~~s~~~l~~l~rG~~~a~I~slaFSpD-------g--~~Las~S~dg-TVhIwdl~~~gg~~ 467 (765)
-.++++++.+-....-.|+.+ |... + +++.++++-+ -+++|.-.+..+..
T Consensus 270 ---~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll 329 (1283)
T KOG1916|consen 270 ---IVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLL 329 (1283)
T ss_pred ---ccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhhh
Confidence 011333333321111123333 3221 2 2345555544 48899988887773
No 391
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=51.39 E-value=4.2e+02 Score=30.23 Aligned_cols=41 Identities=10% Similarity=0.039 Sum_probs=26.6
Q ss_pred CCCEEEEEECCCCeEEEEEeCCCCEEEEEecC---CeEEEEeCC
Q 004255 171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLAT 211 (765)
Q Consensus 171 ~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~---~~LaV~~~~ 211 (765)
.++.|.--|+++|+.-..+.-+..+--+.++| .+|+-|-++
T Consensus 166 p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEG 209 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEG 209 (386)
T ss_dssp --EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S
T ss_pred CCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccC
Confidence 56788888999999777776666777777877 577766654
No 392
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=51.32 E-value=1.7e+02 Score=31.15 Aligned_cols=83 Identities=12% Similarity=0.195 Sum_probs=47.6
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-cccccccEEEEEEccC
Q 004255 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATIQDICFSHY 442 (765)
Q Consensus 364 ~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~-rG~~~a~I~slaFSpD 442 (765)
.+.+-...++.|+|+|+...|++-..+...|--.+.. | ..+.+.. .|. ...-.|++--+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--------G----------~vlr~i~l~g~--~D~EgI~y~g~ 75 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--------G----------KVLRRIPLDGF--GDYEGITYLGN 75 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--------------------EEEEEE-SS---SSEEEEEE-ST
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--------C----------CEEEEEeCCCC--CCceeEEEECC
Confidence 4555556799999999866666555555555444531 3 2333322 232 34678899888
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCC
Q 004255 443 SQWIAIVSSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 443 g~~Las~S~dgTVhIwdl~~~gg~ 466 (765)
++++++.-.++++.++++...+..
T Consensus 76 ~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 76 GRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp TEEEEEETTTTEEEEEEE----TT
T ss_pred CEEEEEEcCCCcEEEEEEeccccc
Confidence 887776667999999999765543
No 393
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=49.93 E-value=4.8e+02 Score=30.42 Aligned_cols=58 Identities=21% Similarity=0.139 Sum_probs=39.3
Q ss_pred CCEEEEEECCCCeEEEEEeCCC---------------------CEE-EEEe--cCCeEEEEeCC----------------
Q 004255 172 PTAVRFYSFQSHCYEHVLRFRS---------------------SVC-MVRC--SPRIVAVGLAT---------------- 211 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~s---------------------~V~-sV~~--s~~~LaV~~~~---------------- 211 (765)
++.|.-+|..||+.+...++.. .|+ ...+ ...+|.++..+
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence 3678888999999988876531 111 1222 34566666432
Q ss_pred ---eEEEEECCCCceeEEEEe
Q 004255 212 ---QIYCFDALTLENKFSVLT 229 (765)
Q Consensus 212 ---~I~iwD~~t~~~l~tl~t 229 (765)
.|+.+|+.|++.++....
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~ 274 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQT 274 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeC
Confidence 699999999999888653
No 394
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=49.89 E-value=56 Score=36.44 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=41.0
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCC
Q 004255 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMP 401 (765)
Q Consensus 350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~~ 401 (765)
.|-++|+.+++.+..+..- .++.+|+.+.|.+ +|.+.+..+..+.|||..+
T Consensus 270 eVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred EEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 6888899999999998742 3688999999887 6666666456799999876
No 395
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=49.50 E-value=1.5e+02 Score=35.95 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=49.6
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc--cCCCEEE
Q 004255 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS--HYSQWIA 447 (765)
Q Consensus 370 ~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS--pDg~~La 447 (765)
.....+.-|.-+ .+|....+++.+.|||++. + ...|+-.- .....|.++.|. |||+.+.
T Consensus 30 ~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~-------~----------~lE~~~~f-~~~~~I~dLDWtst~d~qsiL 90 (631)
T PF12234_consen 30 SNPSLISGSSIK-KIAVVDSSRSELTIWDTRS-------G----------VLEYEESF-SEDDPIRDLDWTSTPDGQSIL 90 (631)
T ss_pred CCcceEeecccC-cEEEEECCCCEEEEEEcCC-------c----------EEEEeeee-cCCCceeeceeeecCCCCEEE
Confidence 344455555544 4555566789999999854 2 22232211 123469999875 8999999
Q ss_pred EEeCCCcEEEEeCCC
Q 004255 448 IVSSKGTCHVFVLSP 462 (765)
Q Consensus 448 s~S~dgTVhIwdl~~ 462 (765)
+.+..+.|.||.--.
T Consensus 91 aVGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 91 AVGFPHHVLLYTQLR 105 (631)
T ss_pred EEEcCcEEEEEEccc
Confidence 999999999997543
No 396
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=49.41 E-value=1e+02 Score=35.52 Aligned_cols=40 Identities=15% Similarity=0.346 Sum_probs=30.8
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (765)
Q Consensus 361 ~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~ 401 (765)
....|....-.+.+|+.+|+|++.|+...-|. |-|+|+..
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~ 338 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGR-VLLIDVAR 338 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCc-EEEEECCC
Confidence 34445555567889999999999988877666 88999965
No 397
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=48.64 E-value=94 Score=22.51 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=18.5
Q ss_pred CCCCEEEEEEcCCCEEEEEeCCC
Q 004255 379 PSGTLLVTASVYGNNINIFRIMP 401 (765)
Q Consensus 379 pdG~lLATaS~dGt~IrVWdi~~ 401 (765)
|+|++|..+...+..|-++|..+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~ 23 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT 23 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC
Confidence 68888888877777899999854
No 398
>PRK10115 protease 2; Provisional
Probab=48.50 E-value=2.8e+02 Score=34.07 Aligned_cols=96 Identities=5% Similarity=0.005 Sum_probs=52.6
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-----CEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-----NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG-----t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
-.++|.|+.+++.+...-.... ..++|.+||+.|+-...+. ..|..+++.+.. .....++
T Consensus 153 ~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~-------------~~d~lv~ 217 (686)
T PRK10115 153 YGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA-------------SQDELVY 217 (686)
T ss_pred EEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh-------------hHCeEEE
Confidence 3677888887764322211222 4599999998776655432 245666664310 0113454
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCC---cEEEEeCCC
Q 004255 424 KLHRGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 462 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dg---TVhIwdl~~ 462 (765)
+-. ....-..+..+.|+++++..+..+ .+.+++...
T Consensus 218 ~e~---~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 218 EEK---DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred eeC---CCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 421 111112445566999887666554 578888543
No 399
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.23 E-value=83 Score=36.94 Aligned_cols=99 Identities=14% Similarity=0.163 Sum_probs=59.0
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCE--EEEE----EcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTL--LVTA----SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~l--LATa----S~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~ 420 (765)
....++=-|++.|+++...+-|.. |+-+.|.|+++. |.+. +.+++.|.-||.+-. |.....| .
T Consensus 354 ~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~------~~~kl~~----~ 422 (644)
T KOG2395|consen 354 EQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ------GKNKLAV----V 422 (644)
T ss_pred CcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEeccccc------Ccceeee----e
Confidence 334566679999999999988877 888888887542 3211 112332333453211 1100111 1
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl 460 (765)
.-+.+.++. .-+|.+-.-+| +||+||.+|-|+|||-
T Consensus 423 q~kqy~~k~---nFsc~aTT~sG-~IvvgS~~GdIRLYdr 458 (644)
T KOG2395|consen 423 QSKQYSTKN---NFSCFATTESG-YIVVGSLKGDIRLYDR 458 (644)
T ss_pred ecccccccc---ccceeeecCCc-eEEEeecCCcEEeehh
Confidence 112233332 35677777776 8999999999999986
No 400
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=44.81 E-value=96 Score=27.63 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=34.5
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~ 400 (765)
-|.|..||-..-+. ...+ -..-+.|+++|++++|..++.-++.|+||..+
T Consensus 35 ~~~Vvyyd~~~~~~--va~g-~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 35 WGNVVYYDGKEVKV--VASG-FSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CceEEEEeCCEeEE--eecc-CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 35677787543222 2222 12346789999999999999888889999863
No 401
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=43.85 E-value=9 Score=45.31 Aligned_cols=92 Identities=13% Similarity=0.218 Sum_probs=59.4
Q ss_pred CCCeEEEEECCCC----cEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255 347 NAGIVVVKDFVTR----AIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (765)
Q Consensus 347 ~dG~V~IwDl~s~----~~i~~~~a-H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~ 421 (765)
.+-.+.|||+.++ +.-..|.+ -....+++++..+-++|.+|.. -+.+++||++..+. .
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~-sr~~~ifdlRqs~~----------------~ 189 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT-SRSVHIFDLRQSLD----------------S 189 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc-cchhhhhhhhhhhh----------------h
Confidence 4567899999876 22223433 3445678899988888888877 55699999864211 0
Q ss_pred EEEEecccccccEEEEEEcc-CCCEEEEEeCCCcEEEEeC
Q 004255 422 LYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 422 l~~l~rG~~~a~I~slaFSp-Dg~~Las~S~dgTVhIwdl 460 (765)
...+. ...++.+..+| .+.|+|+.+ ||.|-+||-
T Consensus 190 ~~svn----Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 190 VSSVN----TKYVQGITVDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred hhhhh----hhhcccceecCCCCCceeccc-cCceeeccc
Confidence 00110 11244566677 667888776 999999994
No 402
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=42.38 E-value=55 Score=37.88 Aligned_cols=49 Identities=14% Similarity=0.316 Sum_probs=33.9
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi 399 (765)
.++.|.+||+.+++.+..+... +|..+.||++|+++|-.+.+. |.|++.
T Consensus 124 ~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~--i~il~~ 172 (443)
T PF04053_consen 124 SSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDS--IYILKY 172 (443)
T ss_dssp ETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-S--EEEEEE
T ss_pred CCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCe--EEEEEe
Confidence 3457999999999999999754 489999999999999998743 666654
No 403
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=41.97 E-value=46 Score=40.01 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=57.5
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 004255 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (765)
Q Consensus 368 H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~La 447 (765)
|...|.--+++..+.+|+-|+.-|. +.+|+-.. | ..++++.. | ....+..++.|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~-lyl~~R~~-------~---------~~~~~~~~-~-~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGS-VYLYNRHT-------G---------EMRKLKNE-G-ATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCceEEEecccce-EEEEecCc-------h---------hhhccccc-C-ccceEEEEEecchhHhhh
Confidence 3445666788999999999998664 88887532 2 02223321 2 223577789999999999
Q ss_pred EEeCCCcEEEEeCCCCCCCc
Q 004255 448 IVSSKGTCHVFVLSPFGGDS 467 (765)
Q Consensus 448 s~S~dgTVhIwdl~~~gg~~ 467 (765)
+|+..|.|-||.++. +++.
T Consensus 93 agt~~g~V~v~ql~~-~~p~ 111 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNK-ELPR 111 (726)
T ss_pred hhcCCceEEeehhhc-cCCC
Confidence 999999999999987 4443
No 404
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=40.54 E-value=1.9e+02 Score=32.99 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=27.8
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
..+..+..- ...|.++.|+.+. .|++...||++++||+.
T Consensus 71 ~ll~~i~w~--~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 71 KLLSSIPWD--SGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CEeEEEEEC--CCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 355544322 1469999999865 55677799999999974
No 405
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=40.30 E-value=5e+02 Score=33.28 Aligned_cols=99 Identities=16% Similarity=0.178 Sum_probs=61.0
Q ss_pred EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCC
Q 004255 86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS 165 (765)
Q Consensus 86 ~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~ 165 (765)
+..|++-..|+-.|+++.-.=+-...++.| |.+- +|+-+
T Consensus 914 ~ytyk~~~~g~~lellh~T~~~~~v~Ai~~----------f~~~--~Lagv----------------------------- 952 (1205)
T KOG1898|consen 914 VYTYKFVRNGDKLELLHKTEIPGPVGAICP----------FQGR--VLAGV----------------------------- 952 (1205)
T ss_pred eEEEEEEecCceeeeeeccCCCccceEEec----------cCCE--EEEec-----------------------------
Confidence 677777666777777776553333345565 5553 44321
Q ss_pred CCCCCCCCEEEEEECCCCeEEEE--EeC-CCCEEEEEecCCeEEEEeCC-eE--EEEECCCCceeEEEEecCC
Q 004255 166 GNCVNSPTAVRFYSFQSHCYEHV--LRF-RSSVCMVRCSPRIVAVGLAT-QI--YCFDALTLENKFSVLTYPV 232 (765)
Q Consensus 166 ~~~~~~p~tV~lWdlktg~~v~t--L~~-~s~V~sV~~s~~~LaV~~~~-~I--~iwD~~t~~~l~tl~t~p~ 232 (765)
.+.+++||+-..++.+. +++ +..|.++.....+|+||... .+ +.|+-... .++.+.+.|.
T Consensus 953 ------G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n-~l~~fadD~~ 1018 (1205)
T KOG1898|consen 953 ------GRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDN-QLIVFADDPV 1018 (1205)
T ss_pred ------ccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCC-eEEEEeCCCc
Confidence 15899999977665543 333 67899999999889988643 34 45554433 3444444444
No 406
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.31 E-value=5.4e+02 Score=28.01 Aligned_cols=55 Identities=11% Similarity=0.013 Sum_probs=37.4
Q ss_pred CEEEEEECCCCeEEEEEeCCCCE--EEEEecCCeEEE-EeCCeEEEEECCCCceeEEEE
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSV--CMVRCSPRIVAV-GLATQIYCFDALTLENKFSVL 228 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V--~sV~~s~~~LaV-~~~~~I~iwD~~t~~~l~tl~ 228 (765)
+.+.--|.++|+.+.+-....+| .++-++ +++++ +..+.+|+.+..|++..+...
T Consensus 33 ~~~~avd~~sG~~~We~ilg~RiE~sa~vvg-dfVV~GCy~g~lYfl~~~tGs~~w~f~ 90 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAILGVRIECSAIVVG-DFVVLGCYSGGLYFLCVKTGSQIWNFV 90 (354)
T ss_pred ceEEEecCCCCcEEeehhhCceeeeeeEEEC-CEEEEEEccCcEEEEEecchhheeeee
Confidence 57777899999888766554444 233334 44555 455689999999997766654
No 407
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=39.15 E-value=2.7e+02 Score=27.62 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=18.1
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 435 QDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 435 ~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
.+|+||.||+ ||+++ +..|||.+...
T Consensus 8 ~~l~WS~Dg~-laV~t-~~~v~IL~~~~ 33 (173)
T PF12657_consen 8 NALAWSEDGQ-LAVAT-GESVHILDPQT 33 (173)
T ss_pred cCeeECCCCC-EEEEc-CCeEEEEeccC
Confidence 4699999996 55554 45688985443
No 408
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.42 E-value=5.6e+02 Score=27.91 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=61.0
Q ss_pred ccCCCCeEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 344 DMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~-~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
-++..|.+.-.|..+|+.+-. +-+-.-+-.++- =|.+++-+...|. +.+-+.++ | .+.
T Consensus 28 igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v---vgdfVV~GCy~g~-lYfl~~~t-------G----------s~~ 86 (354)
T KOG4649|consen 28 IGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV---VGDFVVLGCYSGG-LYFLCVKT-------G----------SQI 86 (354)
T ss_pred EecCCceEEEecCCCCcEEeehhhCceeeeeeEE---ECCEEEEEEccCc-EEEEEecc-------h----------hhe
Confidence 345667777777777765432 222222223333 3667888888665 66667654 4 234
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcc
Q 004255 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 468 (765)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~ 468 (765)
+.+.--.+- .+ .-.-.+|+..|-.+|.|++.+.-|...++..-.
T Consensus 87 w~f~~~~~v-k~-~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 87 WNFVILETV-KV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred eeeeehhhh-cc-ceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 444311010 11 233467899999999999999999888776543
No 409
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=37.36 E-value=13 Score=44.01 Aligned_cols=105 Identities=10% Similarity=0.110 Sum_probs=68.1
Q ss_pred ccCCCCeEEEEECCCCcE--EEEeccCCCCeEEEEECC-CCCEEEEEE---cCCCEEEEEeCCCCcccCCCCCCccccCC
Q 004255 344 DMDNAGIVVVKDFVTRAI--ISQFKAHTSPISALCFDP-SGTLLVTAS---VYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~--i~~~~aH~~~IsaLaFSp-dG~lLATaS---~dGt~IrVWdi~~~~~~~~sG~~~~~~~~ 417 (765)
.|..+|.|.+-.+....- -...++|..++++++|++ |...||.+= ..+..+.|||+....+ ..
T Consensus 75 vG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~lt-----vP------ 143 (783)
T KOG1008|consen 75 VGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLT-----VP------ 143 (783)
T ss_pred hccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccC-----CC------
Confidence 345568888877665432 234568889999999998 455666542 1256789999954211 00
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 418 s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
..-..|..+ +.....+++|-.|-+.|.+|.....+|+||+..
T Consensus 144 --ke~~~fs~~-~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq 185 (783)
T KOG1008|consen 144 --KESPLFSSS-TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ 185 (783)
T ss_pred --ccccccccc-cccCccccccccCcchhhcccccchhhhhhhhh
Confidence 111122221 112345888999999999999999999999973
No 410
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.10 E-value=1.2e+02 Score=35.62 Aligned_cols=83 Identities=13% Similarity=0.273 Sum_probs=49.3
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC--cc--------eEEEEEecccccccEEEEEEc
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS--SH--------VHLYKLHRGITSATIQDICFS 440 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~--s~--------~~l~~l~rG~~~a~I~slaFS 440 (765)
.|..+..|+.|..+|-++.+| |.|-.+-... |..+.--+. .. ..+|. ..+.-.+...+|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~G--i~vMeLp~rw-----G~~s~~eDgk~~v~CRt~~i~~~~ft---ss~~ltl~Qa~WH 174 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKG--LMVMELPKRW-----GKNSEFEDGKSTVNCRTTPVAERFFT---SSTSLTLKQAAWH 174 (741)
T ss_pred EEEEEEecCCCceEEEecCCe--eEEEEchhhc-----CccceecCCCceEEEEeecccceeec---cCCceeeeecccc
Confidence 467788889999988888866 4444441100 100000000 00 11221 1111246788999
Q ss_pred cCC---CEEEEEeCCCcEEEEeCCCC
Q 004255 441 HYS---QWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 441 pDg---~~Las~S~dgTVhIwdl~~~ 463 (765)
||+ ..|..-++|.+++||++...
T Consensus 175 P~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 175 PSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred CCccCCceEEEEecCcEEEEEecCCc
Confidence 997 67888899999999999753
No 411
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=36.21 E-value=1.2e+02 Score=31.70 Aligned_cols=44 Identities=11% Similarity=0.331 Sum_probs=32.7
Q ss_pred CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 004255 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (765)
Q Consensus 391 Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d 452 (765)
|..|.+|++... + ...++.|. |-..|..++.+.-|+||++-=.+
T Consensus 37 g~~Vev~~l~~~------~---------~~~~~~F~---Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 37 GCKVEVYDLEQE------E---------CPLLCTFS---TVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred CCEEEEEEcccC------C---------CceeEEEc---chhheeEEEeccccceEEEEEee
Confidence 667999999631 1 14667764 34579999999999999987543
No 412
>PRK13684 Ycf48-like protein; Provisional
Probab=35.90 E-value=1.5e+02 Score=32.80 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=42.6
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (765)
Q Consensus 369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las 448 (765)
...+.++.++|+|.+++++.. |...+.+|- +. +......++ ....++++++.++++.+++
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~---------gg---------~tW~~~~~~-~~~~l~~i~~~~~g~~~~v 231 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEP---------GQ---------TAWTPHQRN-SSRRLQSMGFQPDGNLWML 231 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcCC---------CC---------CeEEEeeCC-CcccceeeeEcCCCCEEEE
Confidence 356888999999988887776 764443331 10 111122222 3346899999999987766
Q ss_pred EeCCCcEE
Q 004255 449 VSSKGTCH 456 (765)
Q Consensus 449 ~S~dgTVh 456 (765)
+ ..|.+.
T Consensus 232 g-~~G~~~ 238 (334)
T PRK13684 232 A-RGGQIR 238 (334)
T ss_pred e-cCCEEE
Confidence 5 567653
No 413
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=35.88 E-value=1.8e+02 Score=30.71 Aligned_cols=67 Identities=10% Similarity=0.129 Sum_probs=44.4
Q ss_pred CeEEEEECCCCCEEEEEE--cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255 371 PISALCFDPSGTLLVTAS--VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS--~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las 448 (765)
.+.+.+.|+||+.+|... .++..+.++.... ....+..| ..+..-+|++|+...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-------------------~~~~~~~g---~~l~~PS~d~~g~~W~v 82 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-------------------PVRPVLTG---GSLTRPSWDPDGWVWTV 82 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-------------------cceeeccC---CccccccccCCCCEEEE
Confidence 678899999999998877 6566666665421 11122122 24677899999876666
Q ss_pred EeCCCcEEEEe
Q 004255 449 VSSKGTCHVFV 459 (765)
Q Consensus 449 ~S~dgTVhIwd 459 (765)
...+...+++.
T Consensus 83 ~~~~~~~~~~~ 93 (253)
T PF10647_consen 83 DDGSGGVRVVR 93 (253)
T ss_pred EcCCCceEEEE
Confidence 66666666664
No 414
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=35.67 E-value=78 Score=37.48 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=21.5
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEE
Q 004255 421 HLYKLHRGITSATIQDICFSHYSQWIAI 448 (765)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~Las 448 (765)
.+..+..+...+.++.++|+||++.|.+
T Consensus 491 ~~~rf~~~P~gaE~tG~~fspDg~tlFv 518 (524)
T PF05787_consen 491 ELKRFLVGPNGAEITGPCFSPDGRTLFV 518 (524)
T ss_pred ceeeeccCCCCcccccceECCCCCEEEE
Confidence 4445555666678999999999998865
No 415
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=34.70 E-value=41 Score=35.39 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=44.8
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCC-CCeEEEEECCCCCEEEEE--EcCCCEEEEEeCCC
Q 004255 344 DMDNAGIVVVKDFVTRAIISQFKAHT-SPISALCFDPSGTLLVTA--SVYGNNINIFRIMP 401 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~~~aH~-~~IsaLaFSpdG~lLATa--S~dGt~IrVWdi~~ 401 (765)
.+..+|.|+.|.+.-.+.+...-.|. .++..+..+..+.+|+.+ |. +..++.|++.+
T Consensus 119 ~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~-d~~~k~W~ve~ 178 (238)
T KOG2444|consen 119 VGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSH-DRVLKKWNVEK 178 (238)
T ss_pred EeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeecccc-chhhhhcchhh
Confidence 34678999999999888888887887 677777777778888877 77 45688888754
No 416
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.56 E-value=2e+02 Score=30.01 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=44.3
Q ss_pred ECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE----ecccccccEEEEEEccCCCEEEEEeCC
Q 004255 377 FDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL----HRGITSATIQDICFSHYSQWIAIVSSK 452 (765)
Q Consensus 377 FSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l----~rG~~~a~I~slaFSpDg~~Las~S~d 452 (765)
+..+|.+|+.-..+|. +.|||+..... ... ..+..++..- .. .....|.++.++.+|.-|++-+ +
T Consensus 18 l~~~~~~Ll~iT~~G~-l~vWnl~~~k~-------~~~-~~Si~pll~~~~~~~~-~~~~~i~~~~lt~~G~PiV~ls-n 86 (219)
T PF07569_consen 18 LECNGSYLLAITSSGL-LYVWNLKKGKA-------VLP-PVSIAPLLNSSPVSDK-SSSPNITSCSLTSNGVPIVTLS-N 86 (219)
T ss_pred EEeCCCEEEEEeCCCe-EEEEECCCCee-------ccC-CccHHHHhcccccccC-CCCCcEEEEEEcCCCCEEEEEe-C
Confidence 4456778877777675 99999965210 000 0000111100 00 1234689999999998887766 4
Q ss_pred CcEEEEeCCC
Q 004255 453 GTCHVFVLSP 462 (765)
Q Consensus 453 gTVhIwdl~~ 462 (765)
|....|+.+-
T Consensus 87 g~~y~y~~~L 96 (219)
T PF07569_consen 87 GDSYSYSPDL 96 (219)
T ss_pred CCEEEecccc
Confidence 7788888754
No 417
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.44 E-value=1.2e+02 Score=31.48 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=39.2
Q ss_pred CCCCeEEEEECCCCcEEEE-------ec-------cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255 346 DNAGIVVVKDFVTRAIISQ-------FK-------AHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~~i~~-------~~-------aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi 399 (765)
..+|.+.+||+.+++.+.. +. .....|..+.++.+|.-|++-+. |. .-+|+.
T Consensus 29 T~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~-~y~y~~ 94 (219)
T PF07569_consen 29 TSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GD-SYSYSP 94 (219)
T ss_pred eCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CC-EEEecc
Confidence 5789999999998875332 11 24567888999999999988886 65 677875
No 418
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=33.44 E-value=82 Score=22.05 Aligned_cols=25 Identities=28% Similarity=0.635 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255 433 TIQDICFSHYSQWIAIVSSKGTCHVFV 459 (765)
Q Consensus 433 ~I~slaFSpDg~~Las~S~dgTVhIwd 459 (765)
.|.+|+-++ .|+|++++.+.++||.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 377788775 5999999999999983
No 419
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=33.07 E-value=1.2e+02 Score=32.27 Aligned_cols=90 Identities=22% Similarity=0.188 Sum_probs=51.4
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG--t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
.-.+||+.+++....-.....-+++=+|-+||++|.+++..+ +.||+|+-... + + .-+|...... |..
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~---~--~--~~~w~e~~~~---m~~ 116 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTS---D--G--TCDWTESPND---MQS 116 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCC---C--C--CCCceECccc---ccC
Confidence 355899998875433223344556667889999999998743 45888884220 0 0 1122111111 111
Q ss_pred ccccccEEEEEEccCCCEEEEEeCC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSSK 452 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~d 452 (765)
+ .+=-+..-=|||+.|+.|+.+
T Consensus 117 ~---RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 117 G---RWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred C---CccccceECCCCCEEEEeCcC
Confidence 1 111234445899999999887
No 420
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=31.43 E-value=1e+02 Score=21.26 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=17.9
Q ss_pred eEEEEeCCeEEEEECCCCceeEEE
Q 004255 204 IVAVGLATQIYCFDALTLENKFSV 227 (765)
Q Consensus 204 ~LaV~~~~~I~iwD~~t~~~l~tl 227 (765)
+++...++.++.+|+.+++.+++.
T Consensus 9 v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 9 VYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEcCCCEEEEEEcccCcEEEEc
Confidence 444455678999999999887753
No 421
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=30.91 E-value=1.3e+03 Score=29.89 Aligned_cols=94 Identities=12% Similarity=0.151 Sum_probs=54.7
Q ss_pred CeEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 349 GIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~--aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
..+++||+..++.+...+ .-..-|+.+.. .+..++.|..++. ++.+.-++. + .+++.+.
T Consensus 954 ~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeS-V~~~~y~~~------~----------n~l~~fa 1014 (1205)
T KOG1898|consen 954 RFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQES-VHFVRYRRE------D----------NQLIVFA 1014 (1205)
T ss_pred cEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccce-EEEEEEecC------C----------CeEEEEe
Confidence 468888887766554433 22445666655 4677888877665 555444331 1 3555554
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
-......|+++.+= |-.-+|.+..=|.+++-.+.+
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 22222346666655 444677777778777777654
No 422
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=30.49 E-value=1.3e+02 Score=26.92 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=30.6
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 004255 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV 389 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~ 389 (765)
++..+|.+.-||..+++....+.+-. --+.|++++|+.+|+.+-.
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDGLY-FPNGVALSPDESFVLVAET 76 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSEEEEEEG
T ss_pred cCCCCcCEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCEEEEEec
Confidence 45678999999999987654454432 3478999999998877654
No 423
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=30.27 E-value=1.6e+02 Score=34.84 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=42.3
Q ss_pred CEEEEEECCCCeEEEEEeCCCCE--EEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSV--CMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V--~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t 229 (765)
+.|.=+|+.+|+.+...+...+. -.+.....++.++. ++.+++||+.|+|.++..+.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 67899999999999888754432 11233445666654 66899999999999998765
No 424
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=29.92 E-value=2.1e+02 Score=33.75 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=25.7
Q ss_pred cEEEEEEcc----CCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 433 TIQDICFSH----YSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 433 ~I~slaFSp----Dg~~Las~S~dgTVhIwdl~~~gg 465 (765)
.+.+++++. +..+|++.+.|++++|||+.+...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 355666666 778999999999999999998765
No 425
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=29.85 E-value=2.1e+02 Score=31.07 Aligned_cols=57 Identities=5% Similarity=0.018 Sum_probs=38.7
Q ss_pred CEEEEEECCCCeEEEEEeCCCCE-------EEEEecC-------CeEEEEeCC--eEEEEECCCCceeEEEEe
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSV-------CMVRCSP-------RIVAVGLAT--QIYCFDALTLENKFSVLT 229 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V-------~sV~~s~-------~~LaV~~~~--~I~iwD~~t~~~l~tl~t 229 (765)
-+|-.||+++++.++++.|+..+ .++++.. .++-++... .|.+||+.+++-.+.+..
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC
Confidence 48999999999999999987533 4455443 244455543 699999999986555543
No 426
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=27.01 E-value=1.1e+02 Score=20.96 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=20.4
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEE
Q 004255 434 IQDICFSHYSQWIAIVSSKGTCHVF 458 (765)
Q Consensus 434 I~slaFSpDg~~Las~S~dgTVhIw 458 (765)
-.+|+++++|+.+++=+..+.|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4578889999988888888888775
No 427
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=26.51 E-value=32 Score=42.51 Aligned_cols=28 Identities=18% Similarity=0.108 Sum_probs=23.8
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255 439 FSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 439 FSpDg~~Las~S~dgTVhIwdl~~~gg~ 466 (765)
.||||+.+|..+.||.++.|.+--.|..
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~ 270 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKI 270 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccc
Confidence 7999999999999999999887655543
No 428
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=26.02 E-value=1.2e+02 Score=22.17 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=16.9
Q ss_pred EEEEeCCCCE-EEEEecCCeEEE-EeCCeEEEEECCC
Q 004255 186 EHVLRFRSSV-CMVRCSPRIVAV-GLATQIYCFDALT 220 (765)
Q Consensus 186 v~tL~~~s~V-~sV~~s~~~LaV-~~~~~I~iwD~~t 220 (765)
+.+++....+ .++......|.+ +.+++++++|+.|
T Consensus 4 ~W~~~~~~~~~~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 4 LWSYDTGGPIWSSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp EEEEE-SS---S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred eEEEECCCCcCcCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 3333443333 233445555555 4567899999875
No 429
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=26.00 E-value=8.6e+02 Score=26.28 Aligned_cols=107 Identities=12% Similarity=0.166 Sum_probs=56.5
Q ss_pred eEEEEECCCCcEEEEecc------CCCCeEEEEECCCC-----CEEEEEEcCCCEEEEEeCCCCcccC-CCCCCccccCC
Q 004255 350 IVVVKDFVTRAIISQFKA------HTSPISALCFDPSG-----TLLVTASVYGNNINIFRIMPSCMRS-GSGNHKYDWNS 417 (765)
Q Consensus 350 ~V~IwDl~s~~~i~~~~a------H~~~IsaLaFSpdG-----~lLATaS~dGt~IrVWdi~~~~~~~-~sG~~~~~~~~ 417 (765)
.+.+||+.+.++++++.- ..+-++.+.++... .+..-+...+.-|-|+|+....... ..+....+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 688999999998887642 24567888888732 3444455444568899997631100 00000000000
Q ss_pred c----ceEEEEEecccccccEEEEEEcc---CCCEEEEEeCCCcEEEEeCCC
Q 004255 418 S----HVHLYKLHRGITSATIQDICFSH---YSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 418 s----~~~l~~l~rG~~~a~I~slaFSp---Dg~~Las~S~dgTVhIwdl~~ 462 (765)
. ....+.+. ..|..++.+| ||++|.-....++ ++|.+++
T Consensus 115 ~~~~i~g~~~~~~-----dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T 160 (287)
T PF03022_consen 115 GPFTIGGESFQWP-----DGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPT 160 (287)
T ss_dssp EEEEETTEEEEET-----TSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEH
T ss_pred cceeccCceEecC-----CCccccccCCCCCCccEEEEEeCCCC-cEEEEEH
Confidence 0 00111111 1267777765 7778877766553 6676654
No 430
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=25.31 E-value=4.4e+02 Score=33.13 Aligned_cols=111 Identities=15% Similarity=0.119 Sum_probs=62.8
Q ss_pred CeEEEEEecCcEEEEEccCCCcceEeeeecc---------CCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCC
Q 004255 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRD---------GPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLA 145 (765)
Q Consensus 75 ~~vL~~G~~~G~qVWdv~~~g~~~ells~~d---------g~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~ 145 (765)
..-|.+|..+||+|-++++. ....+|.-+| ..++-++|.|- .+. .| +|- ++
T Consensus 1018 k~KlcIgC~kgFeIvsle~l-~~esLL~paD~s~~~~~~ken~kpiai~rv----------~~e--FL-LCy-s~----- 1077 (1175)
T COG5422 1018 KNKLCIGCKKGFEIVSLENL-RTESLLNPADTSPLFFEKKENTKPIAIFRV----------SGE--FL-LCY-SE----- 1077 (1175)
T ss_pred ccceEEeecCCceEeechhh-hhHhhcCcccccHHHHhhcccCceEEEEee----------CCc--EE-EEe-cc-----
Confidence 45689999999999999653 3456777776 23455566542 111 22 221 11
Q ss_pred CCCCcCCCCC-cccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEeCCeEEEEECCCCcee
Q 004255 146 PGQNRSHLGG-VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENK 224 (765)
Q Consensus 146 ~~~~~~~~~~-~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~~~~I~iwD~~t~~~l 224 (765)
.+. |-+.+|-.. +.-+..|.-+-. .++++-.+|++-..+-|.|.+++|++++
T Consensus 1078 -------faFfVN~~Gwrkr-------ts~i~~Weg~Pq-------------~FalsypYIlaf~~~fIeIr~ieTgeLI 1130 (1175)
T COG5422 1078 -------FAFFVNDQGWRKR-------TSWIFHWEGEPQ-------------EFALSYPYILAFEPNFIEIRHIETGELI 1130 (1175)
T ss_pred -------eeEEEcCcCceec-------ccEEEEEcCccc-------------eeeeecceEEEecCceEEEEecccceee
Confidence 111 233344321 234556654322 3344443333333456999999999999
Q ss_pred EEEEecCC
Q 004255 225 FSVLTYPV 232 (765)
Q Consensus 225 ~tl~t~p~ 232 (765)
+++.++-.
T Consensus 1131 ~~ilg~~I 1138 (1175)
T COG5422 1131 RCILGHNI 1138 (1175)
T ss_pred eeeccCce
Confidence 99887543
No 431
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=25.00 E-value=1.1e+02 Score=27.27 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=22.8
Q ss_pred EEEEEccCCCEEEEEe-CCCcEEEEeCCC
Q 004255 435 QDICFSHYSQWIAIVS-SKGTCHVFVLSP 462 (765)
Q Consensus 435 ~slaFSpDg~~Las~S-~dgTVhIwdl~~ 462 (765)
..|++|||+++|.+++ .+++||+|.+..
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 5689999999987665 568999998753
No 432
>PRK10115 protease 2; Provisional
Probab=24.35 E-value=3.3e+02 Score=33.37 Aligned_cols=71 Identities=11% Similarity=0.160 Sum_probs=42.3
Q ss_pred CeEEEEECCCCCEEEEEEcCCC----EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 004255 371 PISALCFDPSGTLLVTASVYGN----NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt----~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L 446 (765)
.+..+.+||||++||-+-+.+. .|+|-|+.+ | ..+-+.-.+ .. ..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t-------g----------~~l~~~i~~---~~-~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET-------G----------NWYPELLDN---VE-PSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC-------C----------CCCCccccC---cc-eEEEEeeCCCEE
Confidence 4677899999999987654332 466666643 2 111111011 11 459999999988
Q ss_pred EEEeCCC------cEEEEeCCC
Q 004255 447 AIVSSKG------TCHVFVLSP 462 (765)
Q Consensus 447 as~S~dg------TVhIwdl~~ 462 (765)
+.+..+. .|..+++.+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt 208 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGT 208 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCC
Confidence 7776542 344555544
No 433
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.21 E-value=3.2e+02 Score=30.09 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=44.4
Q ss_pred EEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC-
Q 004255 374 ALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS- 451 (765)
Q Consensus 374 aLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~- 451 (765)
.|+|+|. ..-+|-|-.-|+...|||...... .....+...+|.| | .=.|||||+||.+.-.
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~------pv~~~s~~~RHfy----G-------HGvfs~dG~~LYATEnd 134 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQE------PVTLVSQEGRHFY----G-------HGVFSPDGRLLYATEND 134 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcC------cEEEecccCceee----c-------ccccCCCCcEEEeecCC
Confidence 3788885 556778888899999999753100 0000000111211 2 1369999999988754
Q ss_pred ----CCcEEEEeCCC
Q 004255 452 ----KGTCHVFVLSP 462 (765)
Q Consensus 452 ----dgTVhIwdl~~ 462 (765)
+|.|-|||...
T Consensus 135 fd~~rGViGvYd~r~ 149 (366)
T COG3490 135 FDPNRGVIGVYDARE 149 (366)
T ss_pred CCCCCceEEEEeccc
Confidence 47899999863
No 434
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=22.95 E-value=1.2e+02 Score=22.18 Aligned_cols=24 Identities=21% Similarity=0.058 Sum_probs=19.4
Q ss_pred EEeCCeEEEEECCCCceeEEEEec
Q 004255 207 VGLATQIYCFDALTLENKFSVLTY 230 (765)
Q Consensus 207 V~~~~~I~iwD~~t~~~l~tl~t~ 230 (765)
...++.|+.+|+.||+.++.....
T Consensus 6 ~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 6 GTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp ETTTSEEEEEETTTTSEEEEEESS
T ss_pred eCCCCEEEEEECCCCCEEEeeeCC
Confidence 344568999999999999988753
No 435
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=22.80 E-value=6.3e+02 Score=26.91 Aligned_cols=47 Identities=9% Similarity=0.023 Sum_probs=29.7
Q ss_pred CCEEEEEECCCCeEEEEEeCCC--CEEEEEecC-CeEEEEeC--CeEEEEECC
Q 004255 172 PTAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP-RIVAVGLA--TQIYCFDAL 219 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~s--~V~sV~~s~-~~LaV~~~--~~I~iwD~~ 219 (765)
+..|.-+|+ +|+.+..+.|.+ -.-+|+.-. ..+++..+ ++++++++.
T Consensus 43 ~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 43 PGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp TTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred CCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 357878886 689999998764 456676654 56666663 468888873
No 436
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.41 E-value=2.3e+02 Score=32.91 Aligned_cols=73 Identities=15% Similarity=0.320 Sum_probs=0.0
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeC---CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 004255 369 TSPISALCFDPSGTLLVTASVYGNNINIFRI---MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (765)
Q Consensus 369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi---~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~ 445 (765)
.++|.++.||+|.+.||.--. +..|.+++. .+ ...+.-.-...+..|....|+.. .-
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~-~~~v~f~nf~~d~~------------------~l~~~~~ck~k~~~IlGF~W~~s-~e 125 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRT-SKTVDFCNFIPDNS------------------QLEYTQECKTKNANILGFCWTSS-TE 125 (657)
T ss_pred CCceeEEEeccCcceEEEEec-CceEEEEecCCCch------------------hhHHHHHhccCcceeEEEEEecC-ee
Q ss_pred EEEEeCCCcEEEEeCCC
Q 004255 446 IAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 446 Las~S~dgTVhIwdl~~ 462 (765)
||..++.| +.+|.+.+
T Consensus 126 ~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 126 IAFITDQG-IEFYQVLP 141 (657)
T ss_pred EEEEecCC-eEEEEEch
No 437
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=21.99 E-value=56 Score=33.91 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=16.3
Q ss_pred cEEEEcCCccEEE--EecccCCCCCC
Q 004255 569 HLLVYTPSGYVVQ--HELLPSIGMGP 592 (765)
Q Consensus 569 ~Llv~s~~G~l~~--y~l~p~~g~~~ 592 (765)
-|-||||||||+| |..+...-|-+
T Consensus 7 altvFSPDGhL~QVEYAqEAvrkGst 32 (249)
T KOG0183|consen 7 ALTVFSPDGHLFQVEYAQEAVRKGST 32 (249)
T ss_pred ceEEECCCCCEEeeHhHHHHHhcCce
Confidence 4889999999988 44444433333
No 438
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=21.92 E-value=4.1e+02 Score=33.01 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=49.5
Q ss_pred CCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec---cc------ccccEEEEEE
Q 004255 370 SPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR---GI------TSATIQDICF 439 (765)
Q Consensus 370 ~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r---G~------~~a~I~slaF 439 (765)
.+...++|+| +...||..+..|+ .-|||+....... .....+.+ |. .......|.|
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~-Wsvw~i~~~~~~~-------------~~~~~~~~~~~gsi~~d~~e~s~w~rI~W 211 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGN-WSVWDIKGRPKRK-------------SSNLRLSRNISGSIIFDPEELSNWKRILW 211 (765)
T ss_pred CccceEEeccCccceEEEEeccCc-EEEEEeccccccC-------------CcceeeccCCCccccCCCcccCcceeeEe
Confidence 3678899998 5668999999775 9999992110000 00111111 11 0112346889
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 440 SHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 440 SpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
.++-..|++++. ..+.++|+...
T Consensus 212 ~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 212 VSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred cCCCCEEEEEcC-CceEEEECCCC
Confidence 999888887764 45889999864
No 439
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=21.53 E-value=1.8e+03 Score=28.42 Aligned_cols=101 Identities=11% Similarity=0.078 Sum_probs=59.8
Q ss_pred cCCCCeEEEEECCCCcEEEEecc--CCCCeEEEEECCCC------CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccC
Q 004255 345 MDNAGIVVVKDFVTRAIISQFKA--HTSPISALCFDPSG------TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 416 (765)
Q Consensus 345 ~~~dG~V~IwDl~s~~~i~~~~a--H~~~IsaLaFSpdG------~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~ 416 (765)
+..++.+...++..+. +..... -...|.|+.|+|-| +++|.|..++..++|.-+.. .
T Consensus 505 A~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd-------~------- 569 (1096)
T KOG1897|consen 505 AGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD-------L------- 569 (1096)
T ss_pred ecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC-------c-------
Confidence 3344555555665544 222222 24689999999742 37899988776666655422 1
Q ss_pred CcceEEEEEecccc--cccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 417 SSHVHLYKLHRGIT--SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 417 ~s~~~l~~l~rG~~--~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
..++...-+.. ...|.-..|--|..+|.++..||.+.-|-+...
T Consensus 570 ---~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~ 615 (1096)
T KOG1897|consen 570 ---ILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDIN 615 (1096)
T ss_pred ---ceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcc
Confidence 11221111111 123566678888999999999999877766543
No 440
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=21.27 E-value=3.8e+02 Score=23.99 Aligned_cols=16 Identities=6% Similarity=0.235 Sum_probs=12.0
Q ss_pred EEEEEEccCCCEEEEE
Q 004255 434 IQDICFSHYSQWIAIV 449 (765)
Q Consensus 434 I~slaFSpDg~~Las~ 449 (765)
-..|++|+|+++|+.+
T Consensus 59 pNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 59 PNGVALSPDESFVLVA 74 (89)
T ss_dssp EEEEEE-TTSSEEEEE
T ss_pred cCeEEEcCCCCEEEEE
Confidence 4689999999977655
No 441
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=20.43 E-value=3.8e+02 Score=30.63 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=41.0
Q ss_pred eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE-EEEecccccccEEEEEEccCCCEEEEEe
Q 004255 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL-YKLHRGITSATIQDICFSHYSQWIAIVS 450 (765)
Q Consensus 372 IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l-~~l~rG~~~a~I~slaFSpDg~~Las~S 450 (765)
...+..++||.+++.+.. |..++-||- |. .. ..+.+. ....++++.|.+|+.+++++
T Consensus 241 f~~v~~~~dG~~~~vg~~-G~~~~s~d~---------G~----------~~W~~~~~~-~~~~l~~v~~~~dg~l~l~g- 298 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSR-GNFYLTWEP---------GQ----------PYWQPHNRA-SARRIQNMGWRADGGLWLLT- 298 (398)
T ss_pred eeeEEEcCCCCEEEEECC-ccEEEecCC---------CC----------cceEEecCC-CccceeeeeEcCCCCEEEEe-
Confidence 455678899999888776 877766763 31 11 112222 23458999999999887655
Q ss_pred CCCcEE
Q 004255 451 SKGTCH 456 (765)
Q Consensus 451 ~dgTVh 456 (765)
..|.+.
T Consensus 299 ~~G~l~ 304 (398)
T PLN00033 299 RGGGLY 304 (398)
T ss_pred CCceEE
Confidence 566643
No 442
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=20.26 E-value=2.3e+02 Score=23.10 Aligned_cols=32 Identities=6% Similarity=-0.021 Sum_probs=24.7
Q ss_pred EEEEEEccCCCEEEEEeC-----CCcEEEEeCCCCCC
Q 004255 434 IQDICFSHYSQWIAIVSS-----KGTCHVFVLSPFGG 465 (765)
Q Consensus 434 I~slaFSpDg~~Las~S~-----dgTVhIwdl~~~gg 465 (765)
+++++.-|||+.|+++.. +....|+.+++-|.
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGs 39 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGS 39 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCC
Confidence 578899999999999964 34567888877654
No 443
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=20.00 E-value=5.2e+02 Score=29.53 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=40.1
Q ss_pred ECCCCcEEEEeccCCCCeE-----EEEECCCCCEEEEEEcCCCEEEEE--eCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 355 DFVTRAIISQFKAHTSPIS-----ALCFDPSGTLLVTASVYGNNINIF--RIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 355 Dl~s~~~i~~~~aH~~~Is-----aLaFSpdG~lLATaS~dGt~IrVW--di~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
|-.+|..+..|..+..-.. -=+|.+||+.|+-+|.-+..-++| |+.+ ..+.+|.-
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t------------------~~i~QLTd 77 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLAT------------------GEITQLTD 77 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-------------------EEEE---
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEccc------------------CEEEECcc
Confidence 5566766666654332222 236889998777666533334555 4433 23444443
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g 464 (765)
|.. ........+|+++.|.-.-...++.-.||.+.+
T Consensus 78 g~g-~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 78 GPG-DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp SS--B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred CCC-CCccceEEecCCCeEEEEECCCeEEEEECCcCc
Confidence 321 112235667888887766666677777776644
Done!