Query 004255
Match_columns 765
No_of_seqs 509 out of 2246
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 19:17:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vu4_A KMHSV2; beta-propeller 100.0 7.4E-29 2.5E-33 268.8 38.4 241 52-463 15-272 (355)
2 3ow8_A WD repeat-containing pr 100.0 1.1E-25 3.7E-30 240.8 37.4 287 50-461 26-320 (321)
3 4gqb_B Methylosome protein 50; 99.9 2.7E-25 9.3E-30 241.1 34.2 237 58-463 84-332 (344)
4 1got_B GT-beta; complex (GTP-b 99.9 9.5E-25 3.2E-29 234.2 37.2 254 52-473 51-312 (340)
5 1vyh_C Platelet-activating fac 99.9 5.3E-25 1.8E-29 243.0 34.7 251 53-473 105-380 (410)
6 1vyh_C Platelet-activating fac 99.9 1.6E-24 5.5E-29 239.2 33.6 259 52-460 146-409 (410)
7 2ynn_A Coatomer subunit beta'; 99.9 3.4E-24 1.2E-28 226.3 34.4 252 52-472 9-269 (304)
8 4h5i_A Guanine nucleotide-exch 99.9 4E-24 1.4E-28 232.9 34.5 223 85-462 105-343 (365)
9 4g56_B MGC81050 protein; prote 99.9 2E-24 6.7E-29 234.4 29.9 244 55-466 93-347 (357)
10 3frx_A Guanine nucleotide-bind 99.9 2E-23 6.8E-28 222.2 36.3 267 52-462 13-317 (319)
11 2pm7_B Protein transport prote 99.9 1.1E-23 3.6E-28 221.8 33.3 264 52-464 5-287 (297)
12 2pbi_B Guanine nucleotide-bind 99.9 1.7E-23 6E-28 226.4 33.9 256 52-473 60-326 (354)
13 1got_B GT-beta; complex (GTP-b 99.9 9.5E-23 3.2E-27 218.6 35.9 233 55-459 96-340 (340)
14 3iz6_a 40S ribosomal protein R 99.9 1E-22 3.5E-27 222.0 35.1 275 52-462 62-375 (380)
15 2ymu_A WD-40 repeat protein; u 99.9 7.7E-23 2.6E-27 232.1 34.0 302 55-459 261-577 (577)
16 4gqb_B Methylosome protein 50; 99.9 4.2E-23 1.4E-27 223.8 29.5 249 55-473 29-299 (344)
17 1erj_A Transcriptional repress 99.9 1.4E-22 4.7E-27 222.0 33.5 261 55-473 63-352 (393)
18 4ery_A WD repeat-containing pr 99.9 4E-22 1.4E-26 209.3 34.6 253 52-473 19-279 (312)
19 3ow8_A WD repeat-containing pr 99.9 5.4E-23 1.8E-27 219.8 28.4 259 97-473 24-290 (321)
20 1erj_A Transcriptional repress 99.9 3.6E-22 1.2E-26 218.7 35.3 241 59-462 126-389 (393)
21 4gga_A P55CDC, cell division c 99.9 6.7E-22 2.3E-26 217.9 36.3 273 75-464 116-397 (420)
22 2ynn_A Coatomer subunit beta'; 99.9 1.5E-22 5.2E-27 213.6 29.3 214 97-473 5-228 (304)
23 1nr0_A Actin interacting prote 99.9 3.4E-22 1.1E-26 232.1 34.8 259 52-463 55-356 (611)
24 2pbi_B Guanine nucleotide-bind 99.9 9.2E-22 3.1E-26 212.9 35.5 222 74-459 117-354 (354)
25 3fm0_A Protein CIAO1; WDR39,SG 99.9 7.4E-22 2.5E-26 212.4 34.2 257 53-463 12-284 (345)
26 3k26_A Polycomb protein EED; W 99.9 6.4E-22 2.2E-26 209.1 32.9 316 52-461 14-365 (366)
27 1nr0_A Actin interacting prote 99.9 2E-22 6.9E-27 234.0 31.5 241 55-465 17-273 (611)
28 3bg1_A Protein SEC13 homolog; 99.9 6E-23 2.1E-27 218.2 24.9 266 52-463 9-294 (316)
29 3jrp_A Fusion protein of prote 99.9 7.1E-22 2.4E-26 209.8 30.9 262 52-463 7-288 (379)
30 3mmy_A MRNA export factor; mRN 99.9 7.2E-22 2.5E-26 208.5 30.2 292 52-464 35-348 (368)
31 3zwl_B Eukaryotic translation 99.9 5E-21 1.7E-25 202.1 35.8 263 52-472 28-314 (369)
32 1r5m_A SIR4-interacting protei 99.9 8.5E-22 2.9E-26 212.1 30.4 293 55-461 107-424 (425)
33 3f3f_A Nucleoporin SEH1; struc 99.9 3.1E-21 1.1E-25 200.5 32.8 273 52-465 7-340 (351)
34 2xzm_R RACK1; ribosome, transl 99.9 6.5E-21 2.2E-25 204.3 36.2 259 52-463 17-286 (343)
35 1gxr_A ESG1, transducin-like e 99.9 6.9E-21 2.4E-25 198.8 34.5 275 54-460 49-335 (337)
36 2hes_X YDR267CP; beta-propelle 99.9 4.2E-21 1.4E-25 205.2 33.5 247 52-461 10-279 (330)
37 4ery_A WD repeat-containing pr 99.9 1.4E-20 5E-25 197.4 36.6 240 53-461 62-311 (312)
38 2hes_X YDR267CP; beta-propelle 99.9 2.7E-21 9.2E-26 206.7 31.6 244 55-462 57-328 (330)
39 4ggc_A P55CDC, cell division c 99.9 1.9E-20 6.5E-25 194.6 36.5 270 76-462 37-315 (318)
40 3fm0_A Protein CIAO1; WDR39,SG 99.9 6.2E-21 2.1E-25 205.2 33.8 250 53-464 58-337 (345)
41 2ymu_A WD-40 repeat protein; u 99.9 4.4E-21 1.5E-25 217.7 34.1 315 55-473 220-549 (577)
42 4aow_A Guanine nucleotide-bind 99.9 2.1E-20 7.3E-25 196.1 36.6 264 52-462 34-337 (340)
43 3odt_A Protein DOA1; ubiquitin 99.9 1.7E-20 5.7E-25 194.2 34.2 275 52-463 14-297 (313)
44 4a11_B DNA excision repair pro 99.9 2.3E-20 7.8E-25 200.2 36.1 265 52-466 39-369 (408)
45 2xzm_R RACK1; ribosome, transl 99.9 7.5E-21 2.6E-25 203.8 31.7 237 53-462 73-340 (343)
46 1sq9_A Antiviral protein SKI8; 99.9 5.7E-21 2E-25 205.6 29.2 252 52-470 12-330 (397)
47 4aez_A CDC20, WD repeat-contai 99.9 2.8E-20 9.5E-25 203.4 34.7 270 75-465 104-383 (401)
48 3dm0_A Maltose-binding peripla 99.9 5.6E-21 1.9E-25 224.5 30.7 281 20-465 344-635 (694)
49 3ei3_B DNA damage-binding prot 99.9 9.4E-21 3.2E-25 204.4 30.0 283 52-462 69-382 (383)
50 1sq9_A Antiviral protein SKI8; 99.9 8.2E-21 2.8E-25 204.5 29.3 248 53-462 59-395 (397)
51 4g56_B MGC81050 protein; prote 99.9 4.7E-21 1.6E-25 207.8 27.1 241 53-462 39-301 (357)
52 3vl1_A 26S proteasome regulato 99.9 1.1E-20 3.7E-25 205.4 30.0 252 75-464 109-367 (420)
53 3iz6_a 40S ribosomal protein R 99.9 1.9E-21 6.6E-26 211.9 22.8 264 86-464 48-331 (380)
54 3dm0_A Maltose-binding peripla 99.9 2.6E-20 8.8E-25 218.9 33.8 239 53-463 427-694 (694)
55 2ovr_B FBW7, F-BOX/WD repeat p 99.9 7.2E-20 2.5E-24 202.4 34.8 275 53-463 156-443 (445)
56 3v7d_B Cell division control p 99.9 9.4E-20 3.2E-24 201.7 35.8 257 53-463 118-382 (464)
57 3i2n_A WD repeat-containing pr 99.9 1.2E-20 4.1E-25 199.0 27.2 267 55-463 64-354 (357)
58 3sfz_A APAF-1, apoptotic pepti 99.9 7.9E-20 2.7E-24 227.2 39.1 285 53-462 612-913 (1249)
59 3gre_A Serine/threonine-protei 99.9 6.1E-21 2.1E-25 209.5 25.5 252 53-473 60-370 (437)
60 2pm9_A Protein WEB1, protein t 99.9 4.8E-21 1.6E-25 207.2 24.1 250 55-468 66-343 (416)
61 2pm9_A Protein WEB1, protein t 99.9 1E-21 3.6E-26 212.4 18.4 262 54-463 111-415 (416)
62 1k8k_C P40, ARP2/3 complex 41 99.9 4E-20 1.4E-24 196.5 29.9 239 55-462 7-274 (372)
63 1p22_A F-BOX/WD-repeat protein 99.9 8.8E-20 3E-24 201.6 33.0 231 53-463 130-366 (435)
64 3vl1_A 26S proteasome regulato 99.9 1.6E-20 5.5E-25 204.1 26.3 226 75-465 68-325 (420)
65 3dw8_B Serine/threonine-protei 99.9 1.8E-20 6E-25 205.1 25.7 259 55-472 27-382 (447)
66 3frx_A Guanine nucleotide-bind 99.9 8.6E-20 3E-24 194.1 29.8 207 97-465 9-230 (319)
67 1p22_A F-BOX/WD-repeat protein 99.9 4.2E-20 1.4E-24 204.2 28.3 241 53-464 170-416 (435)
68 1r5m_A SIR4-interacting protei 99.9 1.3E-19 4.4E-24 195.1 31.2 288 57-463 46-362 (425)
69 2ovr_B FBW7, F-BOX/WD repeat p 99.9 4E-19 1.4E-23 196.4 35.3 259 76-463 130-392 (445)
70 2j04_B YDR362CP, TAU91; beta p 99.9 3E-20 1E-24 213.6 27.2 262 56-462 207-517 (524)
71 3v7d_B Cell division control p 99.9 4.2E-19 1.4E-23 196.4 34.9 238 53-463 159-422 (464)
72 2j04_B YDR362CP, TAU91; beta p 99.9 7.3E-21 2.5E-25 218.7 21.1 233 76-462 174-428 (524)
73 3dwl_C Actin-related protein 2 99.9 3.4E-21 1.2E-25 206.6 17.0 237 57-462 12-281 (377)
74 3zwl_B Eukaryotic translation 99.9 5.2E-19 1.8E-23 186.6 33.1 242 53-462 71-346 (369)
75 3mkq_A Coatomer beta'-subunit; 99.9 2.4E-19 8.3E-24 211.9 33.9 252 52-472 9-269 (814)
76 3i2n_A WD repeat-containing pr 99.9 1.9E-18 6.4E-23 182.2 36.6 258 53-464 15-293 (357)
77 4e54_B DNA damage-binding prot 99.9 3.7E-20 1.3E-24 205.1 23.6 284 55-463 118-431 (435)
78 1pgu_A Actin interacting prote 99.9 4.5E-19 1.5E-23 201.4 33.0 308 58-463 208-573 (615)
79 2w18_A PALB2, fancn, partner a 99.8 4E-19 1.4E-23 193.3 30.4 269 75-460 54-355 (356)
80 1pgu_A Actin interacting prote 99.8 2.9E-19 9.9E-24 203.0 30.8 250 52-472 14-293 (615)
81 1yfq_A Cell cycle arrest prote 99.8 1.5E-19 5E-24 190.2 26.3 256 52-472 7-292 (342)
82 2oaj_A Protein SNI1; WD40 repe 99.8 1.4E-19 4.7E-24 220.6 30.0 122 328-473 493-675 (902)
83 2aq5_A Coronin-1A; WD40 repeat 99.8 1.2E-19 4.1E-24 197.9 25.8 228 77-463 49-300 (402)
84 3sfz_A APAF-1, apoptotic pepti 99.8 5.9E-20 2E-24 228.4 23.3 243 74-472 972-1217(1249)
85 3lrv_A PRE-mRNA-splicing facto 99.8 2.6E-19 8.8E-24 191.6 25.2 101 345-463 188-293 (343)
86 3jro_A Fusion protein of prote 99.8 2.2E-19 7.4E-24 214.2 26.8 264 52-464 5-287 (753)
87 2pm7_B Protein transport prote 99.8 7.5E-19 2.6E-23 184.7 27.4 207 100-462 4-238 (297)
88 2xyi_A Probable histone-bindin 99.8 8.9E-19 3E-23 194.0 29.2 239 75-462 141-410 (430)
89 2vdu_B TRNA (guanine-N(7)-)-me 99.8 1.3E-18 4.5E-23 193.3 30.6 176 173-460 125-337 (450)
90 2aq5_A Coronin-1A; WD40 repeat 99.8 8.2E-19 2.8E-23 191.3 28.2 249 52-463 77-343 (402)
91 3gre_A Serine/threonine-protei 99.8 9.5E-19 3.3E-23 192.0 28.9 268 55-459 110-437 (437)
92 1k8k_C P40, ARP2/3 complex 41 99.8 1.1E-18 3.9E-23 185.3 28.1 257 53-462 49-361 (372)
93 3ei3_B DNA damage-binding prot 99.8 3.3E-18 1.1E-22 184.4 30.6 222 95-473 63-293 (383)
94 4e54_B DNA damage-binding prot 99.8 1.8E-19 6.2E-24 199.6 20.5 220 97-473 111-338 (435)
95 4a11_B DNA excision repair pro 99.8 5.9E-19 2E-23 189.2 23.9 223 85-465 24-279 (408)
96 1gxr_A ESG1, transducin-like e 99.8 1.1E-18 3.7E-23 182.1 24.9 225 74-463 20-256 (337)
97 1l0q_A Surface layer protein; 99.8 2E-17 6.8E-22 178.2 35.0 223 75-463 2-234 (391)
98 3dwl_C Actin-related protein 2 99.8 9.2E-20 3.2E-24 195.5 15.2 199 173-473 33-251 (377)
99 1yfq_A Cell cycle arrest prote 99.8 5.6E-18 1.9E-22 178.1 28.2 237 54-460 54-322 (342)
100 3bg1_A Protein SEC13 homolog; 99.8 9.4E-19 3.2E-23 185.8 21.7 208 98-462 6-247 (316)
101 3vu4_A KMHSV2; beta-propeller 99.8 3.1E-18 1E-22 185.3 26.0 116 343-463 211-337 (355)
102 3bws_A Protein LP49; two-domai 99.8 6.4E-17 2.2E-21 176.7 36.8 226 74-462 180-432 (433)
103 3jrp_A Fusion protein of prote 99.8 5.4E-18 1.9E-22 179.8 27.3 212 96-463 2-241 (379)
104 4h5i_A Guanine nucleotide-exch 99.8 5.3E-18 1.8E-22 184.5 27.3 187 172-473 103-312 (365)
105 1l0q_A Surface layer protein; 99.8 9.5E-17 3.3E-21 172.9 36.8 245 58-472 33-285 (391)
106 3k26_A Polycomb protein EED; W 99.8 2.3E-18 8E-23 181.7 22.9 225 99-465 12-263 (366)
107 2oaj_A Protein SNI1; WD40 repe 99.8 1.6E-17 5.6E-22 202.3 32.8 247 54-461 15-311 (902)
108 3odt_A Protein DOA1; ubiquitin 99.8 1.4E-16 4.7E-21 164.7 34.4 210 95-473 8-225 (313)
109 4gq1_A NUP37; propeller, trans 99.8 3.5E-18 1.2E-22 187.4 21.8 257 75-462 101-389 (393)
110 4aow_A Guanine nucleotide-bind 99.8 5.3E-17 1.8E-21 170.2 29.9 213 96-469 29-253 (340)
111 3mkq_A Coatomer beta'-subunit; 99.8 8.7E-17 3E-21 190.0 35.2 243 53-463 52-303 (814)
112 3f3f_A Nucleoporin SEH1; struc 99.8 8.4E-17 2.9E-21 167.0 30.5 210 97-464 3-251 (351)
113 3dw8_B Serine/threonine-protei 99.8 4.8E-17 1.6E-21 177.8 24.8 113 343-472 193-326 (447)
114 4gga_A P55CDC, cell division c 99.7 2.5E-16 8.7E-21 173.3 27.9 227 172-473 124-364 (420)
115 2xyi_A Probable histone-bindin 99.7 1.7E-16 5.7E-21 175.7 26.2 103 344-465 249-356 (430)
116 4aez_A CDC20, WD repeat-contai 99.7 1.8E-16 6.3E-21 173.1 25.1 216 172-463 112-337 (401)
117 2vdu_B TRNA (guanine-N(7)-)-me 99.7 1.3E-16 4.3E-21 177.3 24.0 100 346-465 168-274 (450)
118 2w18_A PALB2, fancn, partner a 99.7 1.7E-16 5.7E-21 172.7 22.7 55 344-399 300-355 (356)
119 3lrv_A PRE-mRNA-splicing facto 99.7 9.7E-17 3.3E-21 171.5 20.6 104 344-467 144-249 (343)
120 4ggc_A P55CDC, cell division c 99.7 1.4E-15 4.7E-20 157.8 27.0 225 173-473 45-284 (318)
121 3mmy_A MRNA export factor; mRN 99.7 3.8E-16 1.3E-20 164.5 23.0 260 95-473 29-315 (368)
122 3bws_A Protein LP49; two-domai 99.7 3E-15 1E-19 163.4 30.8 229 74-462 133-390 (433)
123 4gq1_A NUP37; propeller, trans 99.7 5.9E-16 2E-20 169.6 24.1 199 172-472 110-358 (393)
124 2hqs_A Protein TOLB; TOLB, PAL 99.7 4E-15 1.4E-19 164.9 30.9 236 75-474 144-398 (415)
125 3jro_A Fusion protein of prote 99.7 8.1E-16 2.8E-20 183.3 25.5 211 98-464 2-240 (753)
126 1pby_B Quinohemoprotein amine 99.7 4.3E-14 1.5E-18 147.5 31.8 280 76-465 2-313 (337)
127 2j04_A TAU60, YPL007P, hypothe 99.7 1.9E-15 6.5E-20 173.8 23.3 240 73-461 25-296 (588)
128 3u4y_A Uncharacterized protein 99.7 2.8E-14 9.4E-19 150.0 27.5 274 75-462 10-304 (331)
129 1nir_A Nitrite reductase; hemo 99.6 5.9E-14 2E-18 161.7 31.5 287 75-465 149-461 (543)
130 2j04_A TAU60, YPL007P, hypothe 99.6 1.3E-14 4.5E-19 166.9 24.7 232 57-450 86-349 (588)
131 2hqs_A Protein TOLB; TOLB, PAL 99.6 1E-13 3.6E-18 153.5 27.3 172 173-462 159-344 (415)
132 1ri6_A Putative isomerase YBHE 99.6 3.7E-13 1.3E-17 140.8 26.4 278 76-465 6-311 (343)
133 1nir_A Nitrite reductase; hemo 99.6 9.7E-13 3.3E-17 151.5 29.6 282 74-469 189-521 (543)
134 3vgz_A Uncharacterized protein 99.6 9.6E-12 3.3E-16 131.0 34.4 172 173-463 111-304 (353)
135 2ojh_A Uncharacterized protein 99.5 4.3E-13 1.5E-17 136.1 21.4 218 172-463 21-259 (297)
136 1jmx_B Amine dehydrogenase; ox 99.5 1.1E-11 3.7E-16 130.1 29.9 88 353-463 237-326 (349)
137 2ecf_A Dipeptidyl peptidase IV 99.5 5.9E-13 2E-17 156.4 21.3 282 56-465 36-370 (741)
138 3hfq_A Uncharacterized protein 99.5 1.3E-11 4.6E-16 130.9 29.8 105 348-468 208-323 (347)
139 2z3z_A Dipeptidyl aminopeptida 99.5 1.7E-12 5.8E-17 151.8 22.4 220 173-465 101-345 (706)
140 1xfd_A DIP, dipeptidyl aminope 99.5 1.1E-12 3.8E-17 153.4 19.9 279 74-461 27-341 (723)
141 3scy_A Hypothetical bacterial 99.4 2.8E-11 9.6E-16 129.4 27.5 106 347-468 231-343 (361)
142 3vgz_A Uncharacterized protein 99.4 1.3E-10 4.5E-15 122.3 30.9 218 76-453 102-335 (353)
143 2ojh_A Uncharacterized protein 99.4 1.5E-11 5.2E-16 124.6 21.4 222 74-453 52-293 (297)
144 2ecf_A Dipeptidyl peptidase IV 99.4 1.8E-11 6E-16 143.8 24.1 99 347-465 310-416 (741)
145 3u4y_A Uncharacterized protein 99.4 1.8E-10 6E-15 120.8 29.0 180 173-464 20-209 (331)
146 2oit_A Nucleoporin 214KDA; NH2 99.4 1.7E-11 5.8E-16 137.0 21.9 103 344-465 167-281 (434)
147 3o4h_A Acylamino-acid-releasin 99.3 1.2E-11 4.1E-16 141.8 18.3 91 349-460 175-274 (582)
148 1jof_A Carboxy-CIS,CIS-muconat 99.3 1.3E-10 4.5E-15 125.4 25.0 78 371-463 255-342 (365)
149 3scy_A Hypothetical bacterial 99.3 5.9E-10 2E-14 119.1 29.8 104 347-465 175-294 (361)
150 3hfq_A Uncharacterized protein 99.3 5.3E-10 1.8E-14 118.6 29.1 103 347-462 160-271 (347)
151 2z3z_A Dipeptidyl aminopeptida 99.3 3.4E-10 1.2E-14 132.3 28.4 97 346-463 330-436 (706)
152 2oit_A Nucleoporin 214KDA; NH2 99.3 1.3E-11 4.4E-16 138.0 15.6 98 344-461 113-222 (434)
153 1k32_A Tricorn protease; prote 99.3 7.4E-11 2.5E-15 145.4 22.7 95 347-461 398-501 (1045)
154 1xfd_A DIP, dipeptidyl aminope 99.3 5.7E-11 2E-15 138.8 20.3 103 347-465 278-396 (723)
155 1z68_A Fibroblast activation p 99.3 1.3E-11 4.4E-16 144.8 14.1 284 75-465 27-347 (719)
156 1ri6_A Putative isomerase YBHE 99.3 3.2E-10 1.1E-14 118.3 23.2 103 347-465 104-212 (343)
157 1k32_A Tricorn protease; prote 99.3 1.1E-10 3.8E-15 143.8 21.8 94 348-462 357-461 (1045)
158 1jof_A Carboxy-CIS,CIS-muconat 99.2 1.4E-09 4.9E-14 117.3 26.3 102 348-462 166-291 (365)
159 1pby_B Quinohemoprotein amine 99.2 8.4E-10 2.9E-14 114.8 23.3 217 173-462 11-269 (337)
160 1jmx_B Amine dehydrogenase; ox 99.2 2.7E-09 9.2E-14 111.7 23.3 57 173-229 21-83 (349)
161 3o4h_A Acylamino-acid-releasin 99.1 1.7E-09 5.9E-14 123.8 22.1 85 350-461 219-312 (582)
162 4a5s_A Dipeptidyl peptidase 4 99.1 7.9E-10 2.7E-14 131.1 17.6 292 74-466 27-355 (740)
163 1q7f_A NHL, brain tumor CG1071 99.1 5E-07 1.7E-11 92.9 35.5 95 348-462 184-280 (286)
164 1z68_A Fibroblast activation p 99.1 5.7E-10 2E-14 130.8 14.6 51 173-223 36-102 (719)
165 3pe7_A Oligogalacturonate lyas 99.1 1.9E-08 6.4E-13 107.7 25.1 97 349-462 216-329 (388)
166 3pe7_A Oligogalacturonate lyas 99.1 2E-08 6.9E-13 107.5 24.6 255 74-462 91-382 (388)
167 2oiz_A Aromatic amine dehydrog 99.0 1.5E-07 5E-12 102.2 28.6 95 347-463 219-335 (361)
168 3dsm_A Uncharacterized protein 98.9 5.2E-07 1.8E-11 96.2 28.7 230 75-461 54-301 (328)
169 3c5m_A Oligogalacturonate lyas 98.9 4.6E-08 1.6E-12 104.4 18.2 100 349-469 264-389 (396)
170 3azo_A Aminopeptidase; POP fam 98.9 1.3E-07 4.4E-12 109.6 22.7 98 349-465 217-326 (662)
171 2gop_A Trilobed protease; beta 98.9 8.2E-07 2.8E-11 93.5 26.7 96 348-473 243-340 (347)
172 4a5s_A Dipeptidyl peptidase 4 98.8 2.4E-08 8.3E-13 118.3 15.2 169 191-465 15-205 (740)
173 3c5m_A Oligogalacturonate lyas 98.8 6.5E-07 2.2E-11 95.4 24.8 91 349-462 216-329 (396)
174 3fvz_A Peptidyl-glycine alpha- 98.8 2E-06 6.8E-11 91.4 28.3 98 347-462 216-322 (329)
175 3dsm_A Uncharacterized protein 98.8 4.9E-06 1.7E-10 88.6 30.4 178 173-462 64-253 (328)
176 2gop_A Trilobed protease; beta 98.7 1E-06 3.5E-11 92.8 23.2 82 350-461 201-290 (347)
177 3e5z_A Putative gluconolactona 98.7 4.2E-06 1.4E-10 86.7 27.4 89 348-463 192-285 (296)
178 2dg1_A DRP35, lactonase; beta 98.7 1.7E-05 5.7E-10 83.2 32.3 106 75-223 56-174 (333)
179 3no2_A Uncharacterized protein 98.7 2.6E-05 8.9E-10 81.5 30.3 230 74-464 4-253 (276)
180 3azo_A Aminopeptidase; POP fam 98.6 1E-06 3.5E-11 102.0 20.7 97 350-466 266-371 (662)
181 2xdw_A Prolyl endopeptidase; a 98.6 1.3E-05 4.5E-10 94.2 29.1 97 348-463 310-415 (710)
182 1qks_A Cytochrome CD1 nitrite 98.6 1.3E-05 4.4E-10 92.9 27.5 181 173-463 177-374 (567)
183 1qks_A Cytochrome CD1 nitrite 98.6 6.3E-05 2.2E-09 87.1 33.2 235 75-463 167-422 (567)
184 1pjx_A Dfpase, DIISOPROPYLFLUO 98.6 6.8E-05 2.3E-09 77.4 29.9 97 348-464 197-301 (314)
185 1q7f_A NHL, brain tumor CG1071 98.5 1.8E-05 6.2E-10 81.2 24.5 93 348-460 141-236 (286)
186 2dg1_A DRP35, lactonase; beta 98.5 7.1E-05 2.4E-09 78.4 28.5 99 349-461 162-262 (333)
187 1xip_A Nucleoporin NUP159; bet 98.5 5.6E-06 1.9E-10 91.5 19.9 80 346-449 143-231 (388)
188 3no2_A Uncharacterized protein 98.4 1.2E-05 4E-10 84.2 20.5 172 172-462 14-195 (276)
189 2oiz_A Aromatic amine dehydrog 98.4 3.7E-05 1.3E-09 83.2 24.0 58 172-230 30-100 (361)
190 2xdw_A Prolyl endopeptidase; a 98.4 2.1E-05 7.2E-10 92.5 23.5 99 348-462 258-366 (710)
191 1rwi_B Serine/threonine-protei 98.4 5.8E-05 2E-09 76.2 23.3 95 348-462 170-264 (270)
192 3fvz_A Peptidyl-glycine alpha- 98.4 0.00011 3.9E-09 77.7 26.2 53 347-400 266-321 (329)
193 2mad_H Methylamine dehydrogena 98.3 0.00015 5.2E-09 79.2 25.8 81 174-261 48-143 (373)
194 3e5z_A Putative gluconolactona 98.3 0.00041 1.4E-08 71.5 27.8 92 349-461 153-245 (296)
195 2ece_A 462AA long hypothetical 98.2 0.00047 1.6E-08 77.3 27.4 81 371-465 322-428 (462)
196 3g4e_A Regucalcin; six bladed 98.2 0.0013 4.4E-08 68.5 29.3 84 349-452 171-262 (297)
197 3sjl_D Methylamine dehydrogena 98.2 0.00066 2.2E-08 74.9 28.2 100 346-465 244-366 (386)
198 3c75_H MADH, methylamine dehyd 98.2 0.0006 2E-08 76.2 27.3 116 75-229 85-218 (426)
199 1yr2_A Prolyl oligopeptidase; 98.2 0.0002 6.7E-09 84.8 24.8 96 348-462 340-441 (741)
200 2ghs_A AGR_C_1268P; regucalcin 98.1 0.0036 1.2E-07 66.2 31.9 68 365-453 225-293 (326)
201 2bkl_A Prolyl endopeptidase; m 98.1 0.00015 5.3E-09 85.0 22.5 98 350-465 253-352 (695)
202 2z2n_A Virginiamycin B lyase; 98.1 0.01 3.5E-07 60.0 33.4 92 348-460 161-253 (299)
203 1xip_A Nucleoporin NUP159; bet 98.1 5.1E-05 1.7E-09 83.9 15.9 89 347-463 104-192 (388)
204 3hrp_A Uncharacterized protein 98.1 0.0019 6.4E-08 71.3 28.5 73 371-461 324-409 (409)
205 2bkl_A Prolyl endopeptidase; m 98.0 0.0002 6.8E-09 84.1 21.6 96 348-462 294-397 (695)
206 2qe8_A Uncharacterized protein 97.9 0.00037 1.3E-08 74.3 19.1 57 173-229 93-163 (343)
207 1yr2_A Prolyl oligopeptidase; 97.9 0.0014 4.7E-08 77.6 25.4 98 349-465 294-396 (741)
208 3g4e_A Regucalcin; six bladed 97.8 0.005 1.7E-07 64.0 25.4 50 173-223 35-85 (297)
209 1mda_H Methylamine dehydrogena 97.8 0.0012 4E-08 72.4 21.1 54 174-229 47-114 (368)
210 2z2n_A Virginiamycin B lyase; 97.8 0.045 1.5E-06 55.1 32.3 92 348-462 203-295 (299)
211 3iuj_A Prolyl endopeptidase; h 97.7 0.005 1.7E-07 72.3 25.7 94 348-462 304-405 (693)
212 1rwi_B Serine/threonine-protei 97.6 0.0017 6E-08 65.2 17.4 95 348-462 128-222 (270)
213 1kb0_A Quinohemoprotein alcoho 97.6 0.0062 2.1E-07 71.7 24.6 53 392-464 457-509 (677)
214 2hz6_A Endoplasmic reticulum t 97.6 1.8E-05 6.3E-10 86.0 2.5 91 346-462 99-192 (369)
215 2qc5_A Streptogramin B lactona 97.6 0.079 2.7E-06 53.3 32.1 91 349-460 167-258 (300)
216 2ece_A 462AA long hypothetical 97.5 0.0092 3.2E-07 66.9 22.9 100 346-462 161-289 (462)
217 3hrp_A Uncharacterized protein 97.5 0.018 6E-07 63.4 24.3 95 348-461 239-353 (409)
218 2iwa_A Glutamine cyclotransfer 97.4 0.051 1.8E-06 56.7 26.3 175 173-464 44-239 (266)
219 2ghs_A AGR_C_1268P; regucalcin 97.4 0.04 1.4E-06 58.1 26.0 97 349-460 161-258 (326)
220 3c75_H MADH, methylamine dehyd 97.4 0.006 2E-07 68.1 20.2 56 173-229 99-167 (426)
221 1pjx_A Dfpase, DIISOPROPYLFLUO 97.4 0.014 4.9E-07 59.7 21.8 100 348-461 152-255 (314)
222 3dr2_A Exported gluconolactona 97.4 0.029 9.8E-07 58.2 24.3 63 371-457 240-302 (305)
223 3sjl_D Methylamine dehydrogena 97.4 0.00053 1.8E-08 75.6 10.7 98 348-464 58-171 (386)
224 2qc5_A Streptogramin B lactona 97.3 0.17 5.7E-06 50.9 28.3 89 349-460 209-298 (300)
225 3nol_A Glutamine cyclotransfer 97.3 0.035 1.2E-06 57.9 22.2 57 173-229 65-125 (262)
226 3nok_A Glutaminyl cyclase; bet 97.2 0.035 1.2E-06 58.0 21.7 56 173-229 75-134 (268)
227 2mad_H Methylamine dehydrogena 97.2 0.0031 1.1E-07 68.7 13.8 94 350-463 48-157 (373)
228 1mda_H Methylamine dehydrogena 97.1 0.0014 4.9E-08 71.7 9.9 94 350-462 47-158 (368)
229 3q7m_A Lipoprotein YFGL, BAMB; 97.1 0.43 1.5E-05 50.5 31.7 93 345-462 245-337 (376)
230 3iuj_A Prolyl endopeptidase; h 97.0 0.036 1.2E-06 64.9 22.2 94 348-461 258-358 (693)
231 3mbr_X Glutamine cyclotransfer 97.0 0.13 4.6E-06 52.9 23.3 57 173-229 43-103 (243)
232 3dr2_A Exported gluconolactona 97.0 0.31 1.1E-05 50.3 26.3 92 349-460 169-265 (305)
233 1yiq_A Quinohemoprotein alcoho 96.9 0.044 1.5E-06 64.6 21.8 41 420-463 466-506 (689)
234 1fwx_A Nitrous oxide reductase 96.9 0.095 3.2E-06 60.6 23.6 220 173-462 112-361 (595)
235 1kb0_A Quinohemoprotein alcoho 96.9 0.04 1.4E-06 64.8 21.1 58 173-230 87-157 (677)
236 3q7m_A Lipoprotein YFGL, BAMB; 96.9 0.14 4.9E-06 54.2 23.8 89 347-459 285-375 (376)
237 2qe8_A Uncharacterized protein 96.9 0.051 1.8E-06 57.6 20.1 79 371-460 196-276 (343)
238 3nol_A Glutamine cyclotransfer 96.8 0.17 5.9E-06 52.6 22.7 57 173-229 107-164 (262)
239 2iwa_A Glutamine cyclotransfer 96.8 0.37 1.3E-05 50.2 25.1 57 173-229 86-144 (266)
240 1yiq_A Quinohemoprotein alcoho 96.8 0.068 2.3E-06 63.0 21.4 57 173-229 80-149 (689)
241 3nok_A Glutaminyl cyclase; bet 96.7 0.13 4.4E-06 53.7 20.8 57 173-229 116-173 (268)
242 3hxj_A Pyrrolo-quinoline quino 96.6 0.13 4.5E-06 52.8 19.7 91 349-463 235-325 (330)
243 3mbr_X Glutamine cyclotransfer 96.5 0.9 3.1E-05 46.7 24.8 57 173-229 85-142 (243)
244 2hz6_A Endoplasmic reticulum t 96.4 0.00078 2.7E-08 73.1 1.5 93 346-463 56-150 (369)
245 1kv9_A Type II quinohemoprotei 96.4 0.15 5.3E-06 59.6 21.1 57 173-229 76-145 (668)
246 2ad6_A Methanol dehydrogenase 96.2 0.27 9.4E-06 56.5 21.4 26 438-463 470-495 (571)
247 1fwx_A Nitrous oxide reductase 95.6 0.21 7.3E-06 57.7 16.9 98 345-451 295-407 (595)
248 3amr_A 3-phytase; beta-propell 95.5 2.1 7E-05 46.4 23.1 101 347-461 151-262 (355)
249 1kv9_A Type II quinohemoprotei 95.2 0.78 2.7E-05 53.7 20.3 40 420-462 449-488 (668)
250 1npe_A Nidogen, entactin; glyc 94.7 3.9 0.00013 40.8 32.9 71 370-462 167-238 (267)
251 2ad6_A Methanol dehydrogenase 94.2 3.9 0.00013 46.8 22.4 58 173-230 125-195 (571)
252 1w6s_A Methanol dehydrogenase 94.1 2.5 8.7E-05 48.8 20.6 59 172-230 181-297 (599)
253 1bpo_A Protein (clathrin); cla 93.7 11 0.00037 42.2 26.7 198 173-465 86-292 (494)
254 1k3i_A Galactose oxidase precu 93.4 2 6.7E-05 49.8 18.3 50 173-222 265-325 (656)
255 1flg_A Protein (quinoprotein e 93.3 1.7 5.9E-05 50.0 17.4 85 347-451 464-549 (582)
256 3ei3_A DNA damage-binding prot 93.1 23 0.00079 44.1 28.3 95 349-462 904-999 (1158)
257 2fp8_A Strictosidine synthase; 93.0 9.4 0.00032 39.3 25.4 72 372-462 231-313 (322)
258 2xe4_A Oligopeptidase B; hydro 93.0 0.28 9.4E-06 58.2 10.2 97 348-463 200-305 (751)
259 3hxj_A Pyrrolo-quinoline quino 92.6 2.8 9.7E-05 42.6 16.2 88 349-460 195-282 (330)
260 1flg_A Protein (quinoprotein e 92.6 12 0.0004 43.0 22.9 56 174-229 79-145 (582)
261 2xzh_A Clathrin heavy chain 1; 92.5 13 0.00046 39.9 29.8 48 173-220 87-135 (365)
262 1ijq_A LDL receptor, low-densi 91.7 14 0.00048 38.3 27.6 95 348-461 98-194 (316)
263 3amr_A 3-phytase; beta-propell 90.8 4.9 0.00017 43.4 16.0 98 346-462 47-162 (355)
264 1w6s_A Methanol dehydrogenase 90.3 15 0.00052 42.3 20.7 57 173-229 73-149 (599)
265 2xzh_A Clathrin heavy chain 1; 90.2 10 0.00034 40.9 17.4 196 348-586 86-290 (365)
266 1bpo_A Protein (clathrin); cla 90.1 9.9 0.00034 42.5 17.7 196 348-586 85-289 (494)
267 3pbp_A Nucleoporin NUP82; beta 89.9 2.6 9E-05 46.8 13.0 109 347-462 39-158 (452)
268 2xe4_A Oligopeptidase B; hydro 89.8 2.5 8.6E-05 49.9 14.0 30 371-400 272-303 (751)
269 3ei3_A DNA damage-binding prot 89.6 50 0.0017 41.2 34.1 91 350-462 493-591 (1158)
270 1npe_A Nidogen, entactin; glyc 89.5 6.2 0.00021 39.4 14.9 95 348-461 57-154 (267)
271 3tc9_A Hypothetical hydrolase; 88.1 12 0.00042 40.9 17.2 72 372-462 228-301 (430)
272 3v65_B Low-density lipoprotein 86.6 37 0.0013 36.3 23.3 73 370-461 202-276 (386)
273 2p4o_A Hypothetical protein; p 86.1 5.4 0.00018 41.0 12.2 79 359-460 22-102 (306)
274 1xi4_A Clathrin heavy chain; a 85.9 21 0.00073 45.4 18.9 48 173-220 86-134 (1630)
275 3v64_C Agrin; beta propeller, 84.5 43 0.0015 35.2 23.9 93 349-461 138-233 (349)
276 3tc9_A Hypothetical hydrolase; 84.5 44 0.0015 36.4 19.2 53 348-400 247-300 (430)
277 3p5b_L Low density lipoprotein 81.9 60 0.002 34.9 25.9 95 348-461 180-276 (400)
278 2fp8_A Strictosidine synthase; 81.7 12 0.00042 38.3 12.7 86 347-451 163-248 (322)
279 4a2l_A BT_4663, two-component 81.5 87 0.003 36.5 33.4 96 346-462 374-480 (795)
280 4hw6_A Hypothetical protein, I 80.3 72 0.0024 34.8 21.2 100 347-459 248-371 (433)
281 4hw6_A Hypothetical protein, I 79.2 45 0.0015 36.4 16.8 73 372-463 230-305 (433)
282 2p9w_A MAL S 1 allergenic prot 78.7 9.9 0.00034 40.7 10.8 98 347-461 98-214 (334)
283 1k3i_A Galactose oxidase precu 77.5 4.6 0.00016 46.7 8.4 95 350-462 220-323 (656)
284 3m0c_C LDL receptor, low-densi 76.7 1.3E+02 0.0045 35.7 24.9 95 348-461 492-588 (791)
285 3kya_A Putative phosphatase; s 76.6 84 0.0029 35.3 18.2 29 371-399 311-339 (496)
286 4a2l_A BT_4663, two-component 75.7 1.3E+02 0.0043 35.1 30.8 70 369-461 542-613 (795)
287 3pbp_A Nucleoporin NUP82; beta 75.5 1.1E+02 0.0036 34.1 20.3 77 368-463 123-211 (452)
288 2p4o_A Hypothetical protein; p 73.9 43 0.0015 34.0 14.0 95 347-461 51-146 (306)
289 1n7d_A LDL receptor, low-densi 73.5 25 0.00085 41.2 13.4 52 349-400 519-570 (699)
290 3sre_A PON1, serum paraoxonase 72.5 13 0.00046 39.9 9.9 97 348-464 138-254 (355)
291 3qqz_A Putative uncharacterize 72.0 90 0.0031 31.7 29.0 73 370-459 173-250 (255)
292 3qqz_A Putative uncharacterize 71.5 32 0.0011 35.1 12.1 82 364-465 21-103 (255)
293 1xi4_A Clathrin heavy chain; a 65.6 32 0.0011 43.8 12.2 106 348-473 85-198 (1630)
294 3sov_A LRP-6, low-density lipo 65.4 1.3E+02 0.0045 31.1 23.5 94 349-461 101-196 (318)
295 3zwu_A Alkaline phosphatase PH 65.3 17 0.00057 42.0 9.2 29 421-449 520-548 (592)
296 2vpj_A Kelch-like protein 12; 54.3 1.7E+02 0.006 29.0 22.6 50 173-222 78-139 (301)
297 3m0c_C LDL receptor, low-densi 53.8 3.4E+02 0.012 32.1 33.9 50 350-399 538-587 (791)
298 3v65_B Low-density lipoprotein 52.8 2.3E+02 0.0079 29.9 30.5 71 370-460 246-316 (386)
299 2p9w_A MAL S 1 allergenic prot 51.7 93 0.0032 33.1 11.5 102 347-465 33-169 (334)
300 1ijq_A LDL receptor, low-densi 50.7 2.2E+02 0.0075 29.0 32.4 75 370-462 164-238 (316)
301 3s94_A LRP-6, low-density lipo 50.2 3.3E+02 0.011 31.0 20.7 183 131-461 10-201 (619)
302 1zgk_A Kelch-like ECH-associat 47.0 2.3E+02 0.008 28.3 15.2 50 173-222 39-101 (308)
303 3sre_A PON1, serum paraoxonase 46.6 80 0.0027 33.8 10.2 51 348-401 202-252 (355)
304 3q6k_A 43.2 kDa salivary prote 46.4 1.9E+02 0.0066 31.2 13.2 109 349-462 123-253 (381)
305 2xbg_A YCF48-like protein; pho 45.3 1.6E+02 0.0054 30.3 12.1 72 367-459 160-231 (327)
306 4a9v_A PHOX; hydrolase, beta-p 43.3 66 0.0023 37.0 9.2 62 372-449 478-548 (592)
307 1cru_A Protein (soluble quinop 42.8 1E+02 0.0035 33.9 10.6 64 371-450 28-98 (454)
308 3ii7_A Kelch-like protein 7; p 41.6 2.8E+02 0.0094 27.6 17.7 50 173-222 70-129 (306)
309 3p5b_L Low density lipoprotein 41.1 3.5E+02 0.012 28.7 34.4 73 370-461 246-319 (400)
310 3sov_A LRP-6, low-density lipo 40.8 3.2E+02 0.011 28.1 31.1 72 371-462 167-238 (318)
311 3v9f_A Two-component system se 40.3 4.8E+02 0.016 30.0 27.4 51 173-223 427-481 (781)
312 3v9f_A Two-component system se 39.3 5E+02 0.017 29.9 28.0 72 369-461 494-567 (781)
313 2ism_A Putative oxidoreductase 39.0 1.1E+02 0.0037 32.1 9.7 89 347-450 49-153 (352)
314 3a9g_A Putative uncharacterize 38.7 1.3E+02 0.0044 31.7 10.3 93 347-451 47-154 (354)
315 2vpj_A Kelch-like protein 12; 37.5 3.1E+02 0.011 27.0 17.8 50 173-222 31-89 (301)
316 3kya_A Putative phosphatase; s 36.8 71 0.0024 35.9 8.1 80 373-462 250-341 (496)
317 1zgk_A Kelch-like ECH-associat 34.8 3.6E+02 0.012 26.9 17.0 50 173-222 90-148 (308)
318 2ism_A Putative oxidoreductase 34.6 2E+02 0.0068 30.0 10.9 70 371-461 32-113 (352)
319 1n7d_A LDL receptor, low-densi 34.6 43 0.0015 39.1 6.2 96 347-461 473-570 (699)
320 2wg3_C Hedgehog-interacting pr 33.1 3.9E+02 0.013 29.4 13.4 101 346-453 33-160 (463)
321 2xbg_A YCF48-like protein; pho 30.2 1E+02 0.0034 31.8 7.6 61 372-454 124-184 (327)
322 2xn4_A Kelch-like protein 2; s 30.0 4.1E+02 0.014 26.2 15.7 50 173-222 30-88 (302)
323 4asc_A Kelch repeat and BTB do 29.9 4.3E+02 0.015 26.3 17.7 50 173-222 67-128 (315)
324 3a9g_A Putative uncharacterize 28.9 1.9E+02 0.0064 30.4 9.6 26 371-398 30-55 (354)
325 3v64_C Agrin; beta propeller, 28.8 5E+02 0.017 26.8 31.7 70 370-459 203-272 (349)
326 3das_A Putative oxidoreductase 27.6 3.1E+02 0.011 29.0 10.9 29 370-399 32-60 (347)
327 4gq2_M Nucleoporin NUP120; bet 26.0 2.1E+02 0.0071 34.7 10.3 33 433-465 237-269 (950)
328 2xn4_A Kelch-like protein 2; s 25.9 4.8E+02 0.017 25.6 18.8 50 173-222 77-135 (302)
329 4gq2_M Nucleoporin NUP120; bet 25.4 3.1E+02 0.011 33.2 11.6 31 371-402 237-267 (950)
330 4a0p_A LRP6, LRP-6, low-densit 25.0 8E+02 0.027 27.9 24.1 181 130-461 6-196 (628)
331 1tl2_A L10, protein (tachylect 25.0 1E+02 0.0036 31.2 6.1 71 371-458 42-112 (236)
332 1cru_A Protein (soluble quinop 22.1 3.9E+02 0.013 29.1 10.8 21 433-453 145-165 (454)
333 3ii7_A Kelch-like protein 7; p 21.6 5.8E+02 0.02 25.0 16.8 50 173-222 24-81 (306)
334 3das_A Putative oxidoreductase 20.0 7.7E+02 0.027 25.9 12.3 97 348-451 52-159 (347)
No 1
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=7.4e-29 Score=268.75 Aligned_cols=241 Identities=20% Similarity=0.245 Sum_probs=189.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
...+++.|..+.|.. ++++|++|..+|++|||++. ...+...+.+.+..+++++. .+
T Consensus 15 ~~~h~~~V~~v~fs~-------dg~~la~g~~~~~~iw~~~~---~~~~~~~~~~~~~~~~~~~~-----------~~-- 71 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQ-------DQSCLILSTLKSFEIYNVHP---VAHIMSQEMRHLSKVRMLHR-----------TN-- 71 (355)
T ss_dssp ----CCCCCEEEECT-------TSSEEEEECSSEEEEEEETT---EEEEEEEECSCCCEEEECTT-----------SS--
T ss_pred cccCCCceEEEEECC-------CCCEEEEEcCCEEEEEecCC---cceeeeeecCCeEEEEEcCC-----------CC--
Confidence 356788999999976 36799999999999999864 34445555556888888843 23
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEeCC
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLAT 211 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~~~ 211 (765)
++++++++ +++|+|||+++++++.++.+++.|.+++++++.++++.++
T Consensus 72 ~~~~~~~~--------------------------------d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~ 119 (355)
T 3vu4_A 72 YVAFVTGV--------------------------------KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGD 119 (355)
T ss_dssp EEEEECSS--------------------------------TTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETT
T ss_pred EEEEEECC--------------------------------ccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcC
Confidence 66654321 3699999999999999999999999999999999999999
Q ss_pred eEEEEECCCC-ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCC
Q 004255 212 QIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGG 290 (765)
Q Consensus 212 ~I~iwD~~t~-~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~ 290 (765)
.|++||+.++ +.++++.+ + .+.+++++.+||+++
T Consensus 120 ~i~i~d~~~~~~~~~~~~~-~---------------~~~~~~s~~~la~~s----------------------------- 154 (355)
T 3vu4_A 120 VISVFKFGNPWKRITDDIR-F---------------GGVCEFSNGLLVYSN----------------------------- 154 (355)
T ss_dssp EEEEEESSTTCCBSSCCEE-E---------------EEEEEEETTEEEEEE-----------------------------
T ss_pred EEEEEECCCCceeeEEecc-C---------------CceEEEEccEEEEeC-----------------------------
Confidence 9999999988 66655544 1 134555555555541
Q ss_pred CcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc----------
Q 004255 291 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---------- 360 (765)
Q Consensus 291 gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~---------- 360 (765)
+..+|.|+|||+.+++
T Consensus 155 ------------------------------------------------------g~~~g~v~iwd~~~~~~~~~~~~~~~ 180 (355)
T 3vu4_A 155 ------------------------------------------------------EFNLGQIHITKLQSSGSATTQDQGVQ 180 (355)
T ss_dssp ------------------------------------------------------SSCTTCEEEEECCC------------
T ss_pred ------------------------------------------------------CCcCcEEEEEECCCCCcccccccccc
Confidence 2357889999998765
Q ss_pred ------EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccE
Q 004255 361 ------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATI 434 (765)
Q Consensus 361 ------~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I 434 (765)
.+..+.+|..+|.+|+|+|+|++|||||.||+.|+|||+.+ + .++..+.+|.+...|
T Consensus 181 ~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~-------~----------~~~~~~~~g~h~~~v 243 (355)
T 3vu4_A 181 QKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED-------G----------VLVREFRRGLDRADV 243 (355)
T ss_dssp ------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT-------C----------CEEEEEECTTCCSCE
T ss_pred ccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC-------C----------cEEEEEEcCCCCCcE
Confidence 26889999999999999999999999999765599999965 3 577888767556789
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 435 QDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 435 ~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
++++|+|||++|++++.|++|+|||+...
T Consensus 244 ~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 244 VDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 99999999999999999999999999764
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.95 E-value=1.1e-25 Score=240.80 Aligned_cols=287 Identities=12% Similarity=0.133 Sum_probs=208.4
Q ss_pred cCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-cceEeeeeccCCEEEEEEecCCCCCCCCCCcc
Q 004255 50 NASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (765)
Q Consensus 50 ~~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g-~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~ 127 (765)
.....|++.|..+.|.... ...+..|++|..++ ++|||+.... .+...+.+|.+.|.++.+.|+
T Consensus 26 ~~~~~H~~~V~~v~~~~~~---~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~----------- 91 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNK---KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT----------- 91 (321)
T ss_dssp EETTSSSSCEEEEEEC----------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS-----------
T ss_pred eecccCCCcEEEEEEecCC---CCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC-----------
Confidence 3356799999999996521 12356888888776 9999996422 123457789999999998864
Q ss_pred ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--Ce
Q 004255 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RI 204 (765)
Q Consensus 128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~ 204 (765)
.++|+..+ .+++|++||+.+++.+..+..+ ..|..+++++ ++
T Consensus 92 --~~~l~s~s---------------------------------~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~ 136 (321)
T 3ow8_A 92 --LPIAASSS---------------------------------LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 136 (321)
T ss_dssp --SSEEEEEE---------------------------------TTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSE
T ss_pred --CCEEEEEe---------------------------------CCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCE
Confidence 34665422 1369999999999999999764 5788999988 67
Q ss_pred EEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCC
Q 004255 205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSG 281 (765)
Q Consensus 205 LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~ 281 (765)
|+++. ++.|++||+.+++...++..+... ...++++| ++||+++.+..+ ..|+..+.
T Consensus 137 l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~-------------v~~~~~spdg~~lasg~~dg~i-----~iwd~~~~-- 196 (321)
T 3ow8_A 137 LATGTHVGKVNIFGVESGKKEYSLDTRGKF-------------ILSIAYSPDGKYLASGAIDGII-----NIFDIATG-- 196 (321)
T ss_dssp EEEECTTSEEEEEETTTCSEEEEEECSSSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEETTTT--
T ss_pred EEEEcCCCcEEEEEcCCCceeEEecCCCce-------------EEEEEECCCCCEEEEEcCCCeE-----EEEECCCC--
Confidence 88766 467999999999988888765442 35688888 899998765311 12322111
Q ss_pred CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 004255 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (765)
Q Consensus 282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~ 361 (765)
.+ .+++.++. .....+.++++++ .+++++.||+|+|||+.+++.
T Consensus 197 ----------~~----------------~~~~~~h~------~~v~~l~~spd~~----~l~s~s~dg~i~iwd~~~~~~ 240 (321)
T 3ow8_A 197 ----------KL----------------LHTLEGHA------MPIRSLTFSPDSQ----LLVTASDDGYIKIYDVQHANL 240 (321)
T ss_dssp ----------EE----------------EEEECCCS------SCCCEEEECTTSC----EEEEECTTSCEEEEETTTCCE
T ss_pred ----------cE----------------EEEEcccC------CceeEEEEcCCCC----EEEEEcCCCeEEEEECCCcce
Confidence 00 01222211 1112233344333 245778999999999999999
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 004255 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (765)
Q Consensus 362 i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp 441 (765)
+..+.+|..+|.+++|+|+|++|++++.|++ |+|||+.. + .++..+. + +...|++++|+|
T Consensus 241 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~-------~----------~~~~~~~-~-h~~~v~~v~~s~ 300 (321)
T 3ow8_A 241 AGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGT-------R----------TCVHTFF-D-HQDQVWGVKYNG 300 (321)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEEC-C-CSSCEEEEEECT
T ss_pred eEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCC-------C----------EEEEEEc-C-CCCcEEEEEECC
Confidence 9999999999999999999999999999775 99999965 3 4666664 3 345799999999
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 004255 442 YSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 442 Dg~~Las~S~dgTVhIwdl~ 461 (765)
|+++|++++.||+|+|||..
T Consensus 301 ~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 301 NGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TSSEEEEEETTCCEEEEECC
T ss_pred CCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999963
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.95 E-value=2.7e-25 Score=241.10 Aligned_cols=237 Identities=13% Similarity=0.123 Sum_probs=168.9
Q ss_pred cEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceE----eeeeccCCEEEEEEecCCCCCCCCCCccccCCE
Q 004255 58 QVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNE----LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (765)
Q Consensus 58 ~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~e----lls~~dg~V~~v~~lP~p~~~~~~d~f~~srpL 132 (765)
.|.-+.|.. +++ |++|..+| ++|||++. ++... .+..|.+.|.+|++.|+ ..+
T Consensus 84 ~v~~~~~s~-------d~~-l~~~s~dg~v~lWd~~~-~~~~~~~~~~~~~H~~~V~~v~~spd-------------g~~ 141 (344)
T 4gqb_B 84 GVADLTWVG-------ERG-ILVASDSGAVELWELDE-NETLIVSKFCKYEHDDIVSTVSVLSS-------------GTQ 141 (344)
T ss_dssp CEEEEEEET-------TTE-EEEEETTSEEEEEEECT-TSSCEEEEEEEECCSSCEEEEEECTT-------------SSE
T ss_pred CEEEEEEeC-------CCe-EEEEECCCEEEEEeccC-CCceeEeeccccCCCCCEEEEEECCC-------------CCE
Confidence 456666643 234 55666665 99999964 44333 34478899999999975 236
Q ss_pred EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---CeEEEE
Q 004255 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAVG 208 (765)
Q Consensus 133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~~LaV~ 208 (765)
|++.+. +++|++||+++++++.++..+ ..|.+++|++ .+|+++
T Consensus 142 l~sgs~---------------------------------d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~ 188 (344)
T 4gqb_B 142 AVSGSK---------------------------------DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSC 188 (344)
T ss_dssp EEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred EEEEeC---------------------------------CCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeee
Confidence 665221 368999999999999999865 6999999986 466665
Q ss_pred e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcC
Q 004255 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (765)
Q Consensus 209 ~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~s 287 (765)
. ++.|++||+.+++...++..+... .....+++ ...+
T Consensus 189 s~D~~v~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~-------~p~~------------------------ 226 (344)
T 4gqb_B 189 SEDNRILLWDTRCPKPASQIGCSAPG-----------YLPTSLAW-------HPQQ------------------------ 226 (344)
T ss_dssp ETTSCEEEEETTSSSCEEECC----C-----------CCEEEEEE-------CSSC------------------------
T ss_pred ccccccccccccccceeeeeecceee-----------ccceeeee-------cCCC------------------------
Confidence 4 678999999999877766432110 00112222 2110
Q ss_pred CCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 004255 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (765)
Q Consensus 288 p~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a 367 (765)
+.+ ++.+..||+|+|||+.+++++.+|.+
T Consensus 227 ---~~~------------------------------------------------l~sg~~dg~v~~wd~~~~~~~~~~~~ 255 (344)
T 4gqb_B 227 ---SEV------------------------------------------------FVFGDENGTVSLVDTKSTSCVLSSAV 255 (344)
T ss_dssp ---TTE------------------------------------------------EEEEETTSEEEEEESCC--CCEEEEC
T ss_pred ---Ccc------------------------------------------------eEEeccCCcEEEEECCCCcEEEEEcC
Confidence 000 12345789999999999999999999
Q ss_pred CCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-E
Q 004255 368 HTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-W 445 (765)
Q Consensus 368 H~~~IsaLaFSpdG-~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~ 445 (765)
|..+|.+|+|+|+| ++|||||.|++ |+|||+.. + .+.++. |+ ...|++|+||||++ +
T Consensus 256 h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~-------~-----------~~~~~~-~H-~~~V~~v~~sp~~~~l 314 (344)
T 4gqb_B 256 HSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSL-------S-----------ELFRSQ-AH-RDFVRDATWSPLNHSL 314 (344)
T ss_dssp CSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTC-------C-----------EEEEEC-CC-SSCEEEEEECSSSTTE
T ss_pred CCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCC-------C-----------cEEEEc-CC-CCCEEEEEEeCCCCeE
Confidence 99999999999998 58999999775 99999854 2 455553 54 45799999999986 5
Q ss_pred EEEEeCCCcEEEEeCCCC
Q 004255 446 IAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 446 Las~S~dgTVhIwdl~~~ 463 (765)
|++++.|++|++|++...
T Consensus 315 las~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 315 LTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEEETTSCEEEEECCC-
T ss_pred EEEEcCCCeEEEEECCCC
Confidence 779999999999999753
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.95 E-value=9.5e-25 Score=234.21 Aligned_cols=254 Identities=14% Similarity=0.114 Sum_probs=191.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
..+|++.|..+.|.. +++.|++|..+| ++|||+. .++....+..|.+.|..+++.|+ .
T Consensus 51 l~gH~~~v~~~~~s~-------d~~~l~s~s~Dg~v~iWd~~-~~~~~~~~~~~~~~v~~~~~s~~-------------~ 109 (340)
T 1got_B 51 LRGHLAKIYAMHWGT-------DSRLLLSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPS-------------G 109 (340)
T ss_dssp ECCCSSCEEEEEECT-------TSSEEEEEETTTEEEEEETT-TCCEEEEEECSSSCEEEEEECTT-------------S
T ss_pred ecCCCCceEEEEECC-------CCCEEEEEeCCCcEEEEECC-CCCcceEeecCCccEEEEEECCC-------------C
Confidence 457889999999864 356888888877 9999995 56677778889999999999874 2
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe----EEEEEeCC-CCEEEEEecC-Ce
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC----YEHVLRFR-SSVCMVRCSP-RI 204 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~----~v~tL~~~-s~V~sV~~s~-~~ 204 (765)
.+|++.+. +++|++||+.+++ ....+..+ ..|.++.+++ ..
T Consensus 110 ~~l~s~~~---------------------------------d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (340)
T 1got_B 110 NYVACGGL---------------------------------DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156 (340)
T ss_dssp SEEEEEET---------------------------------TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE
T ss_pred CEEEEEeC---------------------------------CCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc
Confidence 36655221 3689999998763 55566544 6899998876 34
Q ss_pred EE-EEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCC
Q 004255 205 VA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS 283 (765)
Q Consensus 205 La-V~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s 283 (765)
|+ .+.++.|++||+.+++++.++..|..+ ...++++| +.
T Consensus 157 l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~-------------v~~~~~~~-------~~-------------------- 196 (340)
T 1got_B 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGD-------------VMSLSLAP-------DT-------------------- 196 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECT-------TS--------------------
T ss_pred EEEEECCCcEEEEECCCCcEEEEEcCCCCc-------------eEEEEECC-------CC--------------------
Confidence 44 455678999999999988887766542 22334432 10
Q ss_pred CCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEE
Q 004255 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS 363 (765)
Q Consensus 284 ~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~ 363 (765)
. .+++++.||+|+|||+.+++.+.
T Consensus 197 -------~-------------------------------------------------~l~sg~~d~~v~~wd~~~~~~~~ 220 (340)
T 1got_B 197 -------R-------------------------------------------------LFVSGACDASAKLWDVREGMCRQ 220 (340)
T ss_dssp -------S-------------------------------------------------EEEEEETTSCEEEEETTTCSEEE
T ss_pred -------C-------------------------------------------------EEEEEeCCCcEEEEECCCCeeEE
Confidence 0 01134568999999999999999
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 004255 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (765)
Q Consensus 364 ~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg 443 (765)
.|.+|..+|.+++|+|+|.+||+++.||+ |+|||+.. + ..+..+........|.+++|+|||
T Consensus 221 ~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~-------~----------~~~~~~~~~~~~~~v~~~~~s~~g 282 (340)
T 1got_B 221 TFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRA-------D----------QELMTYSHDNIICGITSVSFSKSG 282 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEECCTTCCSCEEEEEECTTS
T ss_pred EEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCC-------C----------cEEEEEccCCcccceEEEEECCCC
Confidence 99999999999999999999999999775 99999964 2 344444322223469999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255 444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 444 ~~Las~S~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
++|++++.|++|+|||+........+.+|.
T Consensus 283 ~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~ 312 (340)
T 1got_B 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHD 312 (340)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred CEEEEECCCCeEEEEEcccCcEeeEeecCC
Confidence 999999999999999998765555566664
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.94 E-value=5.3e-25 Score=243.05 Aligned_cols=251 Identities=14% Similarity=0.171 Sum_probs=195.8
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
.+|++.|..+.|.. .+.+|++|..+| ++|||++ .+++...+..|.++|.++++.|+ ..
T Consensus 105 ~gh~~~V~~~~~~p-------~~~~l~s~s~Dg~i~vwd~~-~~~~~~~l~~h~~~V~~v~~~~~-------------~~ 163 (410)
T 1vyh_C 105 SGHRSPVTRVIFHP-------VFSVMVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDHS-------------GK 163 (410)
T ss_dssp ECCSSCEEEEEECS-------SSSEEEEEESSSCEEEEETT-TCCCCEEECCCSSCEEEEEECTT-------------SS
T ss_pred cccCCcEEEEEEcC-------CCCEEEEEeCCCeEEEEECC-CCcEEEEEeccCCcEEEEEEcCC-------------CC
Confidence 35777888888865 256888888776 9999995 57788899999999999999864 23
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEE
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG 208 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~ 208 (765)
+|++.+. +++|+|||+.+++++.++..+ ..|.++++++ ++|+++
T Consensus 164 ~l~sgs~---------------------------------D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~ 210 (410)
T 1vyh_C 164 LLASCSA---------------------------------DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA 210 (410)
T ss_dssp EEEEEET---------------------------------TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEE
T ss_pred EEEEEeC---------------------------------CCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 6665321 368999999999999998755 5899999987 567665
Q ss_pred e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcC
Q 004255 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (765)
Q Consensus 209 ~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~s 287 (765)
. ++.|++||+.+++++.++..|... ...+++ ..+.
T Consensus 211 s~D~~i~~wd~~~~~~~~~~~~h~~~-------------v~~~~~-------~~~g------------------------ 246 (410)
T 1vyh_C 211 SRDKTIKMWEVQTGYCVKTFTGHREW-------------VRMVRP-------NQDG------------------------ 246 (410)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEE-------CTTS------------------------
T ss_pred eCCCeEEEEECCCCcEEEEEeCCCcc-------------EEEEEE-------CCCC------------------------
Confidence 4 568999999999998888776542 112222 1110
Q ss_pred CCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 004255 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (765)
Q Consensus 288 p~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a 367 (765)
. .+++++.||+|+|||+.+++....+.+
T Consensus 247 ----~------------------------------------------------~l~s~s~D~~v~vwd~~~~~~~~~~~~ 274 (410)
T 1vyh_C 247 ----T------------------------------------------------LIASCSNDQTVRVWVVATKECKAELRE 274 (410)
T ss_dssp ----S------------------------------------------------EEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ----C------------------------------------------------EEEEEcCCCeEEEEECCCCceeeEecC
Confidence 0 012345789999999999999999999
Q ss_pred CCCCeEEEEECCC--------------------CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 368 HTSPISALCFDPS--------------------GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 368 H~~~IsaLaFSpd--------------------G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
|...|.+++|+|+ |.+|+||+.|+ .|+|||+.. | .++..+.
T Consensus 275 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~-~i~iwd~~~-------~----------~~~~~~~- 335 (410)
T 1vyh_C 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK-TIKMWDVST-------G----------MCLMTLV- 335 (410)
T ss_dssp CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS-EEEEEETTT-------T----------EEEEEEE-
T ss_pred CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC-eEEEEECCC-------C----------ceEEEEE-
Confidence 9999999999996 77999999966 599999965 3 4666664
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
|+ ...|.+++|+|+|++|++++.||+|+|||+........+..|.
T Consensus 336 ~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~ 380 (410)
T 1vyh_C 336 GH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 380 (410)
T ss_dssp CC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS
T ss_pred CC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC
Confidence 43 4579999999999999999999999999998766555566664
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.94 E-value=1.6e-24 Score=239.20 Aligned_cols=259 Identities=12% Similarity=0.119 Sum_probs=190.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
..++.+.|..+.|.. .+++|++|..+| ++|||+. .+++...+..|++.|.++.+.|+.
T Consensus 146 l~~h~~~V~~v~~~~-------~~~~l~sgs~D~~i~iwd~~-~~~~~~~~~~h~~~V~~v~~~p~~------------- 204 (410)
T 1vyh_C 146 LKGHTDSVQDISFDH-------SGKLLASCSADMTIKLWDFQ-GFECIRTMHGHDHNVSSVSIMPNG------------- 204 (410)
T ss_dssp ECCCSSCEEEEEECT-------TSSEEEEEETTSCCCEEETT-SSCEEECCCCCSSCEEEEEECSSS-------------
T ss_pred EeccCCcEEEEEEcC-------CCCEEEEEeCCCeEEEEeCC-CCceeEEEcCCCCCEEEEEEeCCC-------------
Confidence 345777888888864 256888888876 9999995 567788889999999999999752
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV 207 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV 207 (765)
.+|++.+. +++|++||+++++++.++..+ ..|..+.+++ ++|++
T Consensus 205 ~~l~s~s~---------------------------------D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s 251 (410)
T 1vyh_C 205 DHIVSASR---------------------------------DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251 (410)
T ss_dssp SEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred CEEEEEeC---------------------------------CCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEE
Confidence 25654221 369999999999999999865 5899999987 57776
Q ss_pred Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (765)
Q Consensus 208 ~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~ 286 (765)
+. ++.|++||+.++++..++..|..+ ...++++| ...... . ....
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~-------------v~~~~~~~-------~~~~~~----~--~~~~-------- 297 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELREHRHV-------------VECISWAP-------ESSYSS----I--SEAT-------- 297 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSC-------------EEEEEECC-------SCGGGG----G--GGCC--------
T ss_pred EcCCCeEEEEECCCCceeeEecCCCce-------------EEEEEEcC-------cccccc----h--hhhc--------
Confidence 55 568999999999988888776652 23344433 110000 0 0000
Q ss_pred CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (765)
Q Consensus 287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~ 366 (765)
+ . . ...... .+..+++++.||+|+|||+.+++++..+.
T Consensus 298 ----~-----------------~----------------~-~~~~~~----~g~~l~sgs~D~~i~iwd~~~~~~~~~~~ 335 (410)
T 1vyh_C 298 ----G-----------------S----------------E-TKKSGK----PGPFLLSGSRDKTIKMWDVSTGMCLMTLV 335 (410)
T ss_dssp ----S-----------------C----------------C------------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ----c-----------------c----------------c-ccccCC----CCCEEEEEeCCCeEEEEECCCCceEEEEE
Confidence 0 0 0 000000 00123467789999999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 004255 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (765)
Q Consensus 367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L 446 (765)
+|..+|.+++|+|+|++|+||+.|| .|+|||+.. + .++..+. + +...|++++|+|++.+|
T Consensus 336 ~h~~~v~~v~~~~~g~~l~s~s~D~-~i~vwd~~~-------~----------~~~~~~~-~-h~~~v~~l~~~~~~~~l 395 (410)
T 1vyh_C 336 GHDNWVRGVLFHSGGKFILSCADDK-TLRVWDYKN-------K----------RCMKTLN-A-HEHFVTSLDFHKTAPYV 395 (410)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTT-EEEEECCTT-------S----------CCCEEEE-C-CSSCEEEEEECSSSSCE
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEECCC-------C----------ceEEEEc-C-CCCcEEEEEEcCCCCEE
Confidence 9999999999999999999999966 599999854 2 3445554 3 34579999999999999
Q ss_pred EEEeCCCcEEEEeC
Q 004255 447 AIVSSKGTCHVFVL 460 (765)
Q Consensus 447 as~S~dgTVhIwdl 460 (765)
++++.||+|+||++
T Consensus 396 ~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 396 VTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEETTSEEEEEC-
T ss_pred EEEeCCCcEEEEeC
Confidence 99999999999986
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.94 E-value=3.4e-24 Score=226.30 Aligned_cols=252 Identities=13% Similarity=0.070 Sum_probs=187.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
..++.+.|..+.|.. +++.|++|..+| ++|||++ .+.....+..|.++|..+++.|+ .
T Consensus 9 ~~~h~~~V~~~~fsp-------~~~~l~s~~~dg~v~lWd~~-~~~~~~~~~~~~~~v~~~~~~~~-------------~ 67 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHP-------TEPWVLTTLYSGRVELWNYE-TQVEVRSIQVTETPVRAGKFIAR-------------K 67 (304)
T ss_dssp EEEECSCEEEEEECS-------SSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEEEGG-------------G
T ss_pred ecCCCCceEEEEECC-------CCCEEEEEcCCCcEEEEECC-CCceeEEeeccCCcEEEEEEeCC-------------C
Confidence 345778899999965 356777777766 9999995 56677788889999999999974 2
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV 207 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV 207 (765)
.+|++.+. +++|++||+.+++++.+++.+ ..|.+|++++ ++|++
T Consensus 68 ~~l~s~s~---------------------------------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 114 (304)
T 2ynn_A 68 NWIIVGSD---------------------------------DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114 (304)
T ss_dssp TEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred CEEEEECC---------------------------------CCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEE
Confidence 36655221 369999999999999999865 6899999998 57776
Q ss_pred Ee-CCeEEEEECCCCcee-EEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCC
Q 004255 208 GL-ATQIYCFDALTLENK-FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (765)
Q Consensus 208 ~~-~~~I~iwD~~t~~~l-~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s 285 (765)
+. ++.|++||+.+...+ .++..|..+ ...++++| .+
T Consensus 115 gs~D~~v~lWd~~~~~~~~~~~~~h~~~-------------v~~v~~~p-------~~---------------------- 152 (304)
T 2ynn_A 115 GSDDLTVKLWNWENNWALEQTFEGHEHF-------------VMCVAFNP-------KD---------------------- 152 (304)
T ss_dssp EETTSCEEEEEGGGTTEEEEEECCCCSC-------------EEEEEECT-------TC----------------------
T ss_pred ECCCCeEEEEECCCCcchhhhhcccCCc-------------EEEEEECC-------CC----------------------
Confidence 65 567999999887443 444455431 12333322 10
Q ss_pred cCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 004255 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (765)
Q Consensus 286 ~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~ 365 (765)
+. .+++++.||+|+|||+.++.....+
T Consensus 153 -----~~------------------------------------------------~l~sgs~D~~v~iwd~~~~~~~~~~ 179 (304)
T 2ynn_A 153 -----PS------------------------------------------------TFASGCLDRTVKVWSLGQSTPNFTL 179 (304)
T ss_dssp -----TT------------------------------------------------EEEEEETTSEEEEEETTCSSCSEEE
T ss_pred -----CC------------------------------------------------EEEEEeCCCeEEEEECCCCCcccee
Confidence 00 0123457899999999887766555
Q ss_pred c-cCCCCeEEEEECC--CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255 366 K-AHTSPISALCFDP--SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (765)
Q Consensus 366 ~-aH~~~IsaLaFSp--dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD 442 (765)
. +|...|.+++|+| ++.+||||+.|+ .|+|||+.. + .++..+. |+ ...|.+++|+|+
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~s~s~D~-~i~iWd~~~-------~----------~~~~~~~-~h-~~~v~~~~~~p~ 239 (304)
T 2ynn_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDL-TIKIWDYQT-------K----------SCVATLE-GH-MSNVSFAVFHPT 239 (304)
T ss_dssp ECCCTTCEEEEEECCSTTCCEEEEEETTS-EEEEEETTT-------T----------EEEEEEE-CC-SSCEEEEEECSS
T ss_pred ccCCcCcEEEEEEEEcCCCCEEEEEcCCC-eEEEEeCCC-------C----------ccceeeC-CC-CCCEEEEEECCC
Confidence 4 5678999999987 788999999966 599999965 3 4666765 43 456999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCcccccc
Q 004255 443 SQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (765)
Q Consensus 443 g~~Las~S~dgTVhIwdl~~~gg~~~~~~h 472 (765)
+++|++++.||+|+|||+........+..|
T Consensus 240 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~ 269 (304)
T 2ynn_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (304)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred CCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence 999999999999999999876554444444
No 8
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=4e-24 Score=232.89 Aligned_cols=223 Identities=14% Similarity=0.115 Sum_probs=164.1
Q ss_pred cEEEEEccCCCcceEeeee--------ccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCc
Q 004255 85 GFQVLDVEDASNFNELVSK--------RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV 156 (765)
Q Consensus 85 G~qVWdv~~~g~~~ells~--------~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~ 156 (765)
.+++|+++...+..+.+.. ++..|+.++|+|+. .+||+++++
T Consensus 105 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-------------~~la~as~~----------------- 154 (365)
T 4h5i_A 105 HLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-------------TVAAIASSK----------------- 154 (365)
T ss_dssp CEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-------------SCEEEEESC-----------------
T ss_pred cEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-------------CEEEEEECC-----------------
Confidence 4999999765444433332 23568999999863 266664432
Q ss_pred ccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcc
Q 004255 157 RDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQ 234 (765)
Q Consensus 157 r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~ 234 (765)
.+++|+|||+++++++.+++++..|++|+|+| ++|+++.++.+.+|+..+++.+.........
T Consensus 155 --------------~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~- 219 (365)
T 4h5i_A 155 --------------VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKN- 219 (365)
T ss_dssp --------------SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTT-
T ss_pred --------------CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCC-
Confidence 14799999999999999999989999999998 7899998899999999988765543221110
Q ss_pred cCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccccee
Q 004255 235 LAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 312 (765)
Q Consensus 235 ~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~kt 312 (765)
.....++|+| ++|+.++.+
T Consensus 220 ----------~~v~~v~fspdg~~l~~~s~d------------------------------------------------- 240 (365)
T 4h5i_A 220 ----------WSLSKINFIADDTVLIAASLK------------------------------------------------- 240 (365)
T ss_dssp ----------EEEEEEEEEETTEEEEEEEES-------------------------------------------------
T ss_pred ----------CCEEEEEEcCCCCEEEEEecC-------------------------------------------------
Confidence 0123455554 334333211
Q ss_pred ecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE----EEEeccCCCCeEEEEECCCCCEEEEEE
Q 004255 313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI----ISQFKAHTSPISALCFDPSGTLLVTAS 388 (765)
Q Consensus 313 ls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~----i~~~~aH~~~IsaLaFSpdG~lLATaS 388 (765)
......+++||+..... ...+.+|..+|++|+|||||++||+|+
T Consensus 241 --------------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs 288 (365)
T 4h5i_A 241 --------------------------------KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS 288 (365)
T ss_dssp --------------------------------SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred --------------------------------CcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence 01123577888766542 456789999999999999999999999
Q ss_pred cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 389 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 389 ~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
.|++ |+|||+.+ + ..+..+.+|+. ..|++|+|||||++||++|.|+||+||+|..
T Consensus 289 ~D~~-V~iwd~~~-------~----------~~~~~~~~gH~-~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 289 NDNS-IALVKLKD-------L----------SMSKIFKQAHS-FAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TTSC-EEEEETTT-------T----------EEEEEETTSSS-SCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCCE-EEEEECCC-------C----------cEEEEecCccc-CCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9775 99999965 3 56777766754 5799999999999999999999999999964
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.93 E-value=2e-24 Score=234.42 Aligned_cols=244 Identities=12% Similarity=0.046 Sum_probs=168.1
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceE----eeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNE----LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~e----lls~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
+.+.|..+.|.. .+++|+.+.++.++|||+.. ++... ....|.++|.+|++.|+.
T Consensus 93 ~~~~V~~~~~s~-------d~~~l~~s~dg~v~lWd~~~-~~~~~~~~~~~~~h~~~V~~v~~spdg------------- 151 (357)
T 4g56_B 93 TEAGVTDVAWVS-------EKGILVASDSGAVELWEILE-KESLLVNKFAKYEHDDIVKTLSVFSDG------------- 151 (357)
T ss_dssp CSSCEEEEEEET-------TTEEEEEETTSCEEEC---------CCCCEEECCCSSCEEEEEECSSS-------------
T ss_pred CCCCEEEEEEcC-------CCCEEEEECCCEEEEeeccc-cceeEEEeeccCCCCCCEEEEEECCCC-------------
Confidence 456677777754 25666666556699999964 33222 233678999999999752
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---CeEE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVA 206 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~~La 206 (765)
.+|++.+. +++|++||+++++++..++.+ ..|.+|++++ .+++
T Consensus 152 ~~l~sgs~---------------------------------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~ 198 (357)
T 4g56_B 152 TQAVSGGK---------------------------------DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFL 198 (357)
T ss_dssp SEEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEE
T ss_pred CEEEEEeC---------------------------------CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceee
Confidence 36654221 368999999999999999865 6899999976 3565
Q ss_pred EE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCC
Q 004255 207 VG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (765)
Q Consensus 207 V~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s 285 (765)
++ .++.|++||+.+++....+...... .....++++| +
T Consensus 199 s~~~dg~v~~wd~~~~~~~~~~~~~~~~-----------~~v~~v~~sp-------~----------------------- 237 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKPATRIDFCASD-----------TIPTSVTWHP-------E----------------------- 237 (357)
T ss_dssp EEETTSCEEECCTTSSSCBCBCCCTTCC-----------SCEEEEEECT-------T-----------------------
T ss_pred eeccCCceEEEECCCCceeeeeeecccc-----------ccccchhhhh-------c-----------------------
Confidence 54 4568999999988765444321110 0011222221 1
Q ss_pred cCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 004255 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (765)
Q Consensus 286 ~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~ 365 (765)
++.+ ++.+..||.|+|||+.+++.+..+
T Consensus 238 ----~~~~------------------------------------------------la~g~~d~~i~~wd~~~~~~~~~~ 265 (357)
T 4g56_B 238 ----KDDT------------------------------------------------FACGDETGNVSLVNIKNPDSAQTS 265 (357)
T ss_dssp ----STTE------------------------------------------------EEEEESSSCEEEEESSCGGGCEEE
T ss_pred ----ccce------------------------------------------------EEEeecccceeEEECCCCcEeEEE
Confidence 1100 123456889999999999999999
Q ss_pred ccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-CC
Q 004255 366 KAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YS 443 (765)
Q Consensus 366 ~aH~~~IsaLaFSpdG-~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp-Dg 443 (765)
.+|..+|.+|+|+|+| ++|||+|.|++ |+|||+.. + +.+ ... + |...|++|+||| |+
T Consensus 266 ~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~-------~----------~~~-~~~-~-H~~~V~~vafsP~d~ 324 (357)
T 4g56_B 266 AVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADF-------S----------EVF-RDL-S-HRDFVTGVAWSPLDH 324 (357)
T ss_dssp CCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTS-------C----------EEE-EEC-C-CSSCEEEEEECSSST
T ss_pred eccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCC-------C----------cEe-EEC-C-CCCCEEEEEEeCCCC
Confidence 9999999999999997 68999999775 99999864 3 333 332 4 446799999998 89
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCC
Q 004255 444 QWIAIVSSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 444 ~~Las~S~dgTVhIwdl~~~gg~ 466 (765)
++||+++.||+|+||++...+..
T Consensus 325 ~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 325 SKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp TEEEEEETTSCEEEEECC-----
T ss_pred CEEEEEcCCCeEEEEECCCCCcc
Confidence 99999999999999999876544
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.93 E-value=2e-23 Score=222.22 Aligned_cols=267 Identities=14% Similarity=0.107 Sum_probs=182.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC----cceEeeeeccCCEEEEEEecCCCCCCCCCCc
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS----NFNELVSKRDGPVSFLQMQPFPVKDDGCEGF 126 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g----~~~ells~~dg~V~~v~~lP~p~~~~~~d~f 126 (765)
.++|++.|..+.|.. + .+++|++|..+| ++|||+.... .....+..|.++|..+++.|+.
T Consensus 13 l~gH~~~V~~l~~~~----~--~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg--------- 77 (319)
T 3frx_A 13 LEGHNGWVTSLATSA----G--QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG--------- 77 (319)
T ss_dssp ECCCSSCEEEEEECS----S--CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS---------
T ss_pred EccccceEEEEEccC----C--CccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC---------
Confidence 567899999888854 1 246788888776 9999995322 2345678899999999998752
Q ss_pred cccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--C
Q 004255 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--R 203 (765)
Q Consensus 127 ~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~ 203 (765)
.+|+..+. +++|+|||+++++++.++..+ ..|.++++++ +
T Consensus 78 ----~~l~s~s~---------------------------------D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 120 (319)
T 3frx_A 78 ----AYALSASW---------------------------------DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120 (319)
T ss_dssp ----SEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC
T ss_pred ----CEEEEEeC---------------------------------CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC
Confidence 36655221 369999999999999999855 6899999987 5
Q ss_pred eEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCC
Q 004255 204 IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (765)
Q Consensus 204 ~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~ 282 (765)
+|+++. ++.|++||+. ++++.++..|..+ ...+++.| ...
T Consensus 121 ~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~-------------v~~~~~~~-------~~~------------------ 161 (319)
T 3frx_A 121 MIISGSRDKTIKVWTIK-GQCLATLLGHNDW-------------VSQVRVVP-------NEK------------------ 161 (319)
T ss_dssp EEEEEETTSCEEEEETT-SCEEEEECCCSSC-------------EEEEEECC-------C--------------------
T ss_pred EEEEEeCCCeEEEEECC-CCeEEEEeccCCc-------------EEEEEEcc-------CCC------------------
Confidence 677655 5679999986 4566666655442 12223221 100
Q ss_pred CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE
Q 004255 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (765)
Q Consensus 283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i 362 (765)
..+. + ..+++++.||+|++||+.+.+..
T Consensus 162 ---~~~~-~------------------------------------------------~~l~s~~~d~~i~~wd~~~~~~~ 189 (319)
T 3frx_A 162 ---ADDD-S------------------------------------------------VTIISAGNDKMVKAWNLNQFQIE 189 (319)
T ss_dssp --------C------------------------------------------------CEEEEEETTSCEEEEETTTTEEE
T ss_pred ---CCCC-c------------------------------------------------cEEEEEeCCCEEEEEECCcchhh
Confidence 0000 0 01234567999999999999999
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc---CCCC-CCccccCC----------cceEEEE----
Q 004255 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR---SGSG-NHKYDWNS----------SHVHLYK---- 424 (765)
Q Consensus 363 ~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~---~~sG-~~~~~~~~----------s~~~l~~---- 424 (765)
..+.+|..+|.+++|+|+|++|||++.|| .|+|||+...... .... .....++. ...+++.
T Consensus 190 ~~~~~h~~~v~~~~~sp~g~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~ 268 (319)
T 3frx_A 190 ADFIGHNSNINTLTASPDGTLIASAGKDG-EIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268 (319)
T ss_dssp EEECCCCSCEEEEEECTTSSEEEEEETTC-EEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTE
T ss_pred eeecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcC
Confidence 99999999999999999999999999966 5999998652100 0000 00000000 0112222
Q ss_pred -----Eecc------cccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 425 -----LHRG------ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 425 -----l~rG------~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
++.. .+...|.+++|||||++|++++.||+|+|||+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 2111 0123588999999999999999999999999864
No 11
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.93 E-value=1.1e-23 Score=221.79 Aligned_cols=264 Identities=11% Similarity=0.103 Sum_probs=181.1
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC-CCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED-ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~-~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~s 129 (765)
..+|++.|.-+.|+. +++.|++|..+| ++|||++. ..++...+..|.++|..|++.|.. .
T Consensus 5 ~~~h~~~V~~~~~s~-------~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-----------~ 66 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDY-------YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------F 66 (297)
T ss_dssp CCSCSSCEEEEEECT-------TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-----------G
T ss_pred ccCCcCceEEEEECC-------CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-----------c
Confidence 457889999999975 256788888776 99999964 235667888999999999997521 1
Q ss_pred CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeC-CCCEEEEEecC----
Q 004255 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRF-RSSVCMVRCSP---- 202 (765)
Q Consensus 130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~--~v~tL~~-~s~V~sV~~s~---- 202 (765)
..+||..+. +++|+|||+++++ .+.++.. ...|.+|++++
T Consensus 67 g~~l~s~s~---------------------------------D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g 113 (297)
T 2pm7_B 67 GTILASCSY---------------------------------DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 113 (297)
T ss_dssp CSEEEEEET---------------------------------TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGC
T ss_pred CCEEEEEcC---------------------------------CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCC
Confidence 236665321 3699999999874 5566664 46899999986
Q ss_pred CeEEEEe-CCeEEEEECCCCce--eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCC
Q 004255 203 RIVAVGL-ATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP 279 (765)
Q Consensus 203 ~~LaV~~-~~~I~iwD~~t~~~--l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~ 279 (765)
++|+++. ++.|++||+.+.+. ...+..|..+ ...++++|...... +.
T Consensus 114 ~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~-------------v~~~~~~p~~~~~~---------~~-------- 163 (297)
T 2pm7_B 114 PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VNSASWAPATIEED---------GE-------- 163 (297)
T ss_dssp SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSC-------------EEEEEECCCC-----------------------
T ss_pred cEEEEEECCCcEEEEEecCCCceeeeeeecccCc-------------cceEeecCCccccc---------cc--------
Confidence 3677655 56899999987632 3444445431 23344443110000 00
Q ss_pred CCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 004255 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (765)
Q Consensus 280 ~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~ 359 (765)
+ . . .. ....+++++.||+|+|||+.++
T Consensus 164 -----------~-----------------~-----------~----------~~----~~~~l~sgs~D~~v~lwd~~~~ 190 (297)
T 2pm7_B 164 -----------H-----------------N-----------G----------TK----ESRKFVTGGADNLVKIWKYNSD 190 (297)
T ss_dssp -----------------------------------------------------------CCEEEEEETTSCEEEEEEETT
T ss_pred -----------C-----------------C-----------C----------CC----CcceEEEEcCCCcEEEEEEcCC
Confidence 0 0 0 00 0001345678999999999876
Q ss_pred c----EEEEeccCCCCeEEEEECCCC---CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 004255 360 A----IISQFKAHTSPISALCFDPSG---TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 432 (765)
Q Consensus 360 ~----~i~~~~aH~~~IsaLaFSpdG---~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a 432 (765)
+ .+..|.+|..+|.+|+|+|++ .+|||+|.|++ |+|||+.... + ......+....+..
T Consensus 191 ~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iWd~~~~~-----~---------~~~~~~~~~~~~~~ 255 (297)
T 2pm7_B 191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIWTQDNEQ-----G---------PWKKTLLKEEKFPD 255 (297)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESSTT-----S---------CCEEEESSSSCCSS
T ss_pred CceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEEEeCCCC-----C---------ccceeeeecccCCC
Confidence 6 677899999999999999995 89999999765 9999985410 1 01111221112345
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 433 ~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g 464 (765)
.|++++|+|||++||+++.|++|+||+....|
T Consensus 256 ~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp CEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence 79999999999999999999999999987543
No 12
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.93 E-value=1.7e-23 Score=226.42 Aligned_cols=256 Identities=11% Similarity=0.039 Sum_probs=189.7
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
..+|++.|..+.|.. +++.|++|..+| ++|||+. .++....+..+...|..+++.|+ .
T Consensus 60 l~gH~~~V~~~~~s~-------d~~~l~s~s~Dg~v~vWd~~-~~~~~~~~~~~~~~v~~~~~sp~-------------g 118 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCK-------DKRRIVSSSQDGKVIVWDSF-TTNKEHAVTMPCTWVMACAYAPS-------------G 118 (354)
T ss_dssp EECCSSCEEEEEECT-------TSSEEEEEETTSEEEEEETT-TCCEEEEEECSSSCCCEEEECTT-------------S
T ss_pred ecCCCCeEEEEEECC-------CCCEEEEEeCCCeEEEEECC-CCCcceEEecCCCCEEEEEECCC-------------C
Confidence 467899999999965 256788888877 9999985 56677778888899999999975 2
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC------eEEEEEe-CCCCEEEEEecC-
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH------CYEHVLR-FRSSVCMVRCSP- 202 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg------~~v~tL~-~~s~V~sV~~s~- 202 (765)
.+||+ ++ .++++++|++... .....+. +...|.++++++
T Consensus 119 ~~las-g~--------------------------------~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 165 (354)
T 2pbi_B 119 CAIAC-GG--------------------------------LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS 165 (354)
T ss_dssp SEEEE-ES--------------------------------TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSS
T ss_pred CEEEE-ee--------------------------------CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCC
Confidence 36654 21 1368999998653 2344554 446899999987
Q ss_pred -CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCC
Q 004255 203 -RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (765)
Q Consensus 203 -~~LaV~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~ 280 (765)
+.|+++ .++.|++||+.+++++.++.+|..+ ...+++.| +.
T Consensus 166 ~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~-------------v~~~~~~~-------~~----------------- 208 (354)
T 2pbi_B 166 DMQILTASGDGTCALWDVESGQLLQSFHGHGAD-------------VLCLDLAP-------SE----------------- 208 (354)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEECC-------CS-----------------
T ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC-------------eEEEEEEe-------CC-----------------
Confidence 455554 5678999999999998888876652 12233321 10
Q ss_pred CCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 004255 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (765)
Q Consensus 281 ~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~ 360 (765)
. +. .+++++.||.|++||+.+++
T Consensus 209 --------~-g~------------------------------------------------~l~sgs~Dg~v~~wd~~~~~ 231 (354)
T 2pbi_B 209 --------T-GN------------------------------------------------TFVSGGCDKKAMVWDMRSGQ 231 (354)
T ss_dssp --------S-CC------------------------------------------------EEEEEETTSCEEEEETTTCC
T ss_pred --------C-CC------------------------------------------------EEEEEeCCCeEEEEECCCCc
Confidence 0 00 01245678999999999999
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 004255 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (765)
Q Consensus 361 ~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS 440 (765)
++..+.+|..+|.+++|+|+|.+||||+.|++ |+|||+.. + ..+..+........+.+++|+
T Consensus 232 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~-------~----------~~~~~~~~~~~~~~~~~~~~s 293 (354)
T 2pbi_B 232 CVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRA-------D----------REVAIYSKESIIFGASSVDFS 293 (354)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEECCTTCCSCEEEEEEC
T ss_pred EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCC-------C----------cEEEEEcCCCcccceeEEEEe
Confidence 99999999999999999999999999999775 99999964 2 244444322223368999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255 441 HYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 441 pDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
|||++|++++.|++|+|||+........+..|.
T Consensus 294 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~ 326 (354)
T 2pbi_B 294 LSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 326 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred CCCCEEEEEECCCcEEEEECCCCceEEEEECCC
Confidence 999999999999999999997654444455664
No 13
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.92 E-value=9.5e-23 Score=218.63 Aligned_cols=233 Identities=11% Similarity=0.101 Sum_probs=174.9
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC---cceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g---~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
+...|..+.|.. .++.|++|..++ ++|||+.... .+...+..|.+.|.++.+.|+ .
T Consensus 96 ~~~~v~~~~~s~-------~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------~- 155 (340)
T 1got_B 96 RSSWVMTCAYAP-------SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD------------N- 155 (340)
T ss_dssp SSSCEEEEEECT-------TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET------------T-
T ss_pred CCccEEEEEECC-------CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC------------C-
Confidence 344455555543 356788887776 8999996432 244567788999999999863 1
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV 207 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV 207 (765)
.|++.+. +++|++||+++++.+.++..+ ..|.++++++ ++|++
T Consensus 156 -~l~s~s~---------------------------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 156 -QIVTSSG---------------------------------DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp -EEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred -cEEEEEC---------------------------------CCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 3443221 368999999999999999854 6899999987 56776
Q ss_pred Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCC
Q 004255 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (765)
Q Consensus 208 ~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~ 284 (765)
+. ++.|++||+.++++..++..|..+ ...++++| ++|
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~-------------v~~v~~~p~~~~l--------------------------- 241 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESD-------------INAICFFPNGNAF--------------------------- 241 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSC-------------EEEEEECTTSSEE---------------------------
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCC-------------EEEEEEcCCCCEE---------------------------
Confidence 55 568999999999988888766542 23344433 111
Q ss_pred CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE
Q 004255 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ 364 (765)
Q Consensus 285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~ 364 (765)
++++.||+|+|||+.+++.+..
T Consensus 242 ----------------------------------------------------------~s~s~d~~v~iwd~~~~~~~~~ 263 (340)
T 1got_B 242 ----------------------------------------------------------ATGSDDATCRLFDLRADQELMT 263 (340)
T ss_dssp ----------------------------------------------------------EEEETTSCEEEEETTTTEEEEE
T ss_pred ----------------------------------------------------------EEEcCCCcEEEEECCCCcEEEE
Confidence 1345688999999999988777
Q ss_pred ecc--CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255 365 FKA--HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (765)
Q Consensus 365 ~~a--H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD 442 (765)
+.. +...|.+++|+|+|++|++++.|| .|+|||+.. + ..+..+. |+ ...|.+++|+||
T Consensus 264 ~~~~~~~~~v~~~~~s~~g~~l~~g~~d~-~i~vwd~~~-------~----------~~~~~~~-~h-~~~v~~~~~s~d 323 (340)
T 1got_B 264 YSHDNIICGITSVSFSKSGRLLLAGYDDF-NCNVWDALK-------A----------DRAGVLA-GH-DNRVSCLGVTDD 323 (340)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTS-EEEEEETTT-------C----------CEEEEEE-CC-SSCEEEEEECTT
T ss_pred EccCCcccceEEEEECCCCCEEEEECCCC-eEEEEEccc-------C----------cEeeEee-cC-CCcEEEEEEcCC
Confidence 753 345899999999999999999966 599999854 2 3555564 53 457999999999
Q ss_pred CCEEEEEeCCCcEEEEe
Q 004255 443 SQWIAIVSSKGTCHVFV 459 (765)
Q Consensus 443 g~~Las~S~dgTVhIwd 459 (765)
|++||+++.|++|+|||
T Consensus 324 g~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 324 GMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSCEEEEETTSCEEEEC
T ss_pred CCEEEEEcCCccEEecC
Confidence 99999999999999996
No 14
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.92 E-value=1e-22 Score=221.96 Aligned_cols=275 Identities=11% Similarity=0.078 Sum_probs=188.1
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
..+|++.|..+.|.. .++.|++|..+| ++|||+. .++....+..|...|..+++.|+.
T Consensus 62 l~gH~~~V~~~~~sp-------~~~~l~s~s~D~~v~iWd~~-~~~~~~~~~~h~~~v~~~~~s~~g------------- 120 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTP-------EKNWIVSASQDGRLIVWNAL-TSQKTHAIKLHCPWVMECAFAPNG------------- 120 (380)
T ss_dssp ECCCSSCEEEEEECT-------TSSCEEEEETTSEEEEEETT-TTEEEEEEECCCTTCCCCEECTTS-------------
T ss_pred ccccccEEEEEEEcC-------CCCEEEEEeCCCeEEEEECC-CCccceEEecCCCCEEEEEECCCC-------------
Confidence 467889999999865 256788888876 9999995 566777888999999999998752
Q ss_pred CEEEEEEcCCCCC-----CC---CC------CCcCCCCCcccCCcCCCCCCCC---CCCCEEEEEECCCCeEEEEEe---
Q 004255 131 PFLLVVAGEDTNT-----LA---PG------QNRSHLGGVRDGMMDSQSGNCV---NSPTAVRFYSFQSHCYEHVLR--- 190 (765)
Q Consensus 131 pLLavv~~d~~~~-----~~---~~------~~~~~~~~~r~g~~~~~~~~~~---~~p~tV~lWdlktg~~v~tL~--- 190 (765)
.+||+.+.|.... .. .. ...++.+.+....+.+..+..+ ..+++|++||+++++.+..+.
T Consensus 121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~ 200 (380)
T 3iz6_a 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200 (380)
T ss_dssp SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence 3555422221100 00 00 0001111111111111111111 256899999999999998883
Q ss_pred ---CCCCEEEEEecC---CeEEEEe-CCeEEEEECC-CCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecC
Q 004255 191 ---FRSSVCMVRCSP---RIVAVGL-ATQIYCFDAL-TLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASN 262 (765)
Q Consensus 191 ---~~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~-t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~ 262 (765)
+...|.++.+++ ++|++|. ++.|++||+. +.+.+.++.+|..+ ...++++| +
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~-------------v~~v~~~p-------~ 260 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD-------------INSVKFFP-------D 260 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC-------------CCEEEECT-------T
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC-------------eEEEEEec-------C
Confidence 235899999865 6777665 5689999997 44666666666542 23344433 1
Q ss_pred CceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccc
Q 004255 263 TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG 342 (765)
Q Consensus 263 ~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~ 342 (765)
. . .+
T Consensus 261 ~---------------------------~-------------------------------------------------~l 264 (380)
T 3iz6_a 261 G---------------------------Q-------------------------------------------------RF 264 (380)
T ss_dssp S---------------------------S-------------------------------------------------EE
T ss_pred C---------------------------C-------------------------------------------------eE
Confidence 0 0 01
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCC-------CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 004255 343 ADMDNAGIVVVKDFVTRAIISQFKAHTS-------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~-------~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~ 415 (765)
++++.||+|+|||+.+++.+..+..|.. .|.+++|+|+|++|++++.||. |+|||+.. +
T Consensus 265 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~~-------~------ 330 (380)
T 3iz6_a 265 GTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTLL-------A------ 330 (380)
T ss_dssp EEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETTT-------C------
T ss_pred EEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC-EEEEECCC-------C------
Confidence 2345789999999999999888876533 4899999999999999999775 99999854 2
Q ss_pred CCcceEEEEEe---cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 416 NSSHVHLYKLH---RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 416 ~~s~~~l~~l~---rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
..+..+. .+ +...|.+++|||||++|+++|.|++|+||++..
T Consensus 331 ----~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 331 ----EMVLNLGTLQNS-HEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp ----CEEEEECCSCSS-CCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred ----ceEEEEecccCC-CCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 3444542 23 345799999999999999999999999999875
No 15
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.92 E-value=7.7e-23 Score=232.14 Aligned_cols=302 Identities=18% Similarity=0.182 Sum_probs=202.1
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEE
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLL 133 (765)
+...|..+.|.. +++.|++|..++ +++||. .+++.+.+..|.++|..+++.|+ ..+|
T Consensus 261 ~~~~v~~v~~~~-------d~~~l~~~~~d~~i~~w~~--~~~~~~~~~~h~~~v~~~~~~~~-------------~~~l 318 (577)
T 2ymu_A 261 HSSSVNGVAFRP-------DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPD-------------GQTI 318 (577)
T ss_dssp CSSCEEEEEECT-------TSSEEEEEETTSCEEEEET--TSCEEEEECCCSSCEEEEEECTT-------------SSEE
T ss_pred CCCCEEEEEEcC-------CCCEEEEEeCCCEEEEEeC--CCcEEEEEecCCCCeEEEEECCC-------------CCEE
Confidence 344455555532 356788887776 999997 35677888899999999999874 2366
Q ss_pred EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCCEEEEEecC--CeEEEEeC
Q 004255 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGLA 210 (765)
Q Consensus 134 avv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~-~~s~V~sV~~s~--~~LaV~~~ 210 (765)
++.+. +++|++||+... .+..+. +...|.++++++ ++|+++..
T Consensus 319 ~t~~~---------------------------------d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 364 (577)
T 2ymu_A 319 ASASD---------------------------------DKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASD 364 (577)
T ss_dssp EEEET---------------------------------TSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEeC---------------------------------CCeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEEeC
Confidence 55321 358999998654 455665 456899999987 67887764
Q ss_pred -CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCce--ecCC-ccc--cCCCCCCCCC
Q 004255 211 -TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLL--LSNS-GRL--SPQNLTPSGV 282 (765)
Q Consensus 211 -~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~--~~~~-G~~--s~~~lt~~~~ 282 (765)
+.|++||. +++++.++..|..+ ...++++| ++||+++.+.. ++.. +.. ..........
T Consensus 365 dg~v~~~~~-~~~~~~~~~~~~~~-------------v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~ 430 (577)
T 2ymu_A 365 DKTVKLWNR-NGQLLQTLTGHSSS-------------VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 430 (577)
T ss_dssp TSEEEEEET-TCCEEEEEECCSSC-------------EEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEE
T ss_pred CCEEEEEcC-CCCEEEEecCCCCC-------------eEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeE
Confidence 57999995 67778888776652 35688888 88998876532 2221 111 0000111222
Q ss_pred CCCcCCCCCcceeeehhhhh---hhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 004255 283 SPSTSPGGSSLVARYAMEHS---KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (765)
Q Consensus 283 s~s~sp~~gslva~~a~d~~---k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~ 359 (765)
...++|++..++... .+.. +.+.....+++.++. .....+.++++++. ++.+..||.|+|||. ++
T Consensus 431 ~~~~s~d~~~l~~~~-~d~~v~~w~~~~~~~~~~~~~~------~~v~~~~~spd~~~----las~~~d~~i~iw~~-~~ 498 (577)
T 2ymu_A 431 GVAFSPDDQTIASAS-DDKTVKLWNRNGQLLQTLTGHS------SSVRGVAFSPDGQT----IASASDDKTVKLWNR-NG 498 (577)
T ss_dssp EEEECTTSSEEEEEE-TTSEEEEEETTSCEEEEEECCS------SCEEEEEECTTSCE----EEEEETTSEEEEEET-TS
T ss_pred EEEECCCCCEEEEEc-CCCEEEEEECCCCEEEEEcCCC------CCEEEEEEcCCCCE----EEEEeCCCEEEEEcC-CC
Confidence 334566554443211 1111 111111112332222 11223344454443 456788999999995 67
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 004255 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (765)
Q Consensus 360 ~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaF 439 (765)
+.+..+.+|..+|.+|+|+|||++|||++.|| .|+|||. + | ..+..+. |+ ...|++|+|
T Consensus 499 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg-~v~lwd~-~-------~----------~~~~~~~-~h-~~~v~~~~f 557 (577)
T 2ymu_A 499 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDK-TVKLWNR-N-------G----------QLLQTLT-GH-SSSVWGVAF 557 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTS-EEEEECT-T-------S----------CEEEEEE-CC-SSCEEEEEE
T ss_pred CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcC-EEEEEeC-C-------C----------CEEEEEc-CC-CCCEEEEEE
Confidence 88999999999999999999999999999966 5999996 2 3 4666664 53 467999999
Q ss_pred ccCCCEEEEEeCCCcEEEEe
Q 004255 440 SHYSQWIAIVSSKGTCHVFV 459 (765)
Q Consensus 440 SpDg~~Las~S~dgTVhIwd 459 (765)
+|||++|++++.|++|+|||
T Consensus 558 s~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 558 SPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CTTSSCEEEEETTSCEEEEC
T ss_pred cCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999997
No 16
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.92 E-value=4.2e-23 Score=223.83 Aligned_cols=249 Identities=16% Similarity=0.064 Sum_probs=174.8
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccC----------CCcceEeeeeccCCEEEEEEecCCCCCCCCC
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVED----------ASNFNELVSKRDGPVSFLQMQPFPVKDDGCE 124 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~----------~g~~~ells~~dg~V~~v~~lP~p~~~~~~d 124 (765)
....|..+.|.. ++++|+.|.+..+++||... ........-.++.+|..+++.|+
T Consensus 29 ~~~~v~~~~fs~-------dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-------- 93 (344)
T 4gqb_B 29 MERQLEAARYRS-------DGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-------- 93 (344)
T ss_dssp CCSEEEEEEECT-------TSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT--------
T ss_pred ccCCEEEEEECC-------CCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC--------
Confidence 456688888865 36788888877788887320 11111222345678999999974
Q ss_pred CccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-----CCCCEEEEE
Q 004255 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-----FRSSVCMVR 199 (765)
Q Consensus 125 ~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~-----~~s~V~sV~ 199 (765)
+ .|++ +++ +++|+|||+.+++.+..++ +.+.|.+|+
T Consensus 94 -----~-~l~~-~s~--------------------------------dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~ 134 (344)
T 4gqb_B 94 -----R-GILV-ASD--------------------------------SGAVELWELDENETLIVSKFCKYEHDDIVSTVS 134 (344)
T ss_dssp -----T-EEEE-EET--------------------------------TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEE
T ss_pred -----C-eEEE-EEC--------------------------------CCEEEEEeccCCCceeEeeccccCCCCCEEEEE
Confidence 1 3443 221 3699999999998766554 346899999
Q ss_pred ecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCC
Q 004255 200 CSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQN 276 (765)
Q Consensus 200 ~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~ 276 (765)
|++ ++|+++. ++.|++||+.++++++++.+|..+ ...+++++ +.
T Consensus 135 ~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~-------------V~~~~~~~-------~~------------- 181 (344)
T 4gqb_B 135 VLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ-------------VTCVAASP-------HK------------- 181 (344)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECS-------SC-------------
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc-------------eEEEEecC-------CC-------------
Confidence 987 6788765 557999999999999988877652 22333322 10
Q ss_pred CCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEEC
Q 004255 277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 356 (765)
Q Consensus 277 lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl 356 (765)
.. .+++++.||+|+|||+
T Consensus 182 --------------~~------------------------------------------------~l~s~s~D~~v~iwd~ 199 (344)
T 4gqb_B 182 --------------DS------------------------------------------------VFLSCSEDNRILLWDT 199 (344)
T ss_dssp --------------TT------------------------------------------------EEEEEETTSCEEEEET
T ss_pred --------------CC------------------------------------------------ceeeeccccccccccc
Confidence 00 0123456899999999
Q ss_pred CCCcEEEEec--cCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccccc
Q 004255 357 VTRAIISQFK--AHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT 433 (765)
Q Consensus 357 ~s~~~i~~~~--aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~ 433 (765)
.+++.+..+. .|...+.+++|+| ++.+||+|+.|| .|+|||+.. + ..+..+. |+ ...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg-~v~~wd~~~-------~----------~~~~~~~-~h-~~~ 259 (344)
T 4gqb_B 200 RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG-TVSLVDTKS-------T----------SCVLSSA-VH-SQC 259 (344)
T ss_dssp TSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS-EEEEEESCC-------------------CCEEEE-CC-SSC
T ss_pred cccceeeeeecceeeccceeeeecCCCCcceEEeccCC-cEEEEECCC-------C----------cEEEEEc-CC-CCC
Confidence 9999888875 4666899999999 467899999966 599999965 3 3555664 43 456
Q ss_pred EEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255 434 IQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 434 I~slaFSpDg-~~Las~S~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
|++|+|+||| ++||++|.|++|+|||+... ....+..|.
T Consensus 260 v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~-~~~~~~~H~ 299 (344)
T 4gqb_B 260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLS-ELFRSQAHR 299 (344)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTCC-EEEEECCCS
T ss_pred EEEEEEccCCCeEEEEEeCCCeEEEEECCCC-cEEEEcCCC
Confidence 9999999998 68999999999999998753 233345553
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.92 E-value=1.4e-22 Score=222.02 Aligned_cols=261 Identities=14% Similarity=0.112 Sum_probs=180.1
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeecc------------------CCEEEEEEecC
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRD------------------GPVSFLQMQPF 116 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~d------------------g~V~~v~~lP~ 116 (765)
+++.|..+.|.. +++.|++|.++.++||++. .+++...+..+. ..|.++++.|+
T Consensus 63 h~~~V~~v~fsp-------dg~~la~g~~~~v~i~~~~-~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 134 (393)
T 1erj_A 63 HTSVVCCVKFSN-------DGEYLATGCNKTTQVYRVS-DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134 (393)
T ss_dssp CSSCCCEEEECT-------TSSEEEEECBSCEEEEETT-TCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred CCCEEEEEEECC-------CCCEEEEEcCCcEEEEEec-CCCEEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence 666677777744 4678999998889999995 455555554432 24888888864
Q ss_pred CCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCE
Q 004255 117 PVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSV 195 (765)
Q Consensus 117 p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V 195 (765)
..+||+.+. +++|+|||+.+++.+..+..+ ..|
T Consensus 135 -------------g~~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~h~~~v 168 (393)
T 1erj_A 135 -------------GKFLATGAE---------------------------------DRLIRIWDIENRKIVMILQGHEQDI 168 (393)
T ss_dssp -------------SSEEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCE
T ss_pred -------------CCEEEEEcC---------------------------------CCeEEEEECCCCcEEEEEccCCCCE
Confidence 236665221 368999999999999999855 689
Q ss_pred EEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccc
Q 004255 196 CMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL 272 (765)
Q Consensus 196 ~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~ 272 (765)
.++++++ ++|+++. ++.|++||+.++++..++..+.. ...++++| .+
T Consensus 169 ~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~--------------v~~~~~~~-------~~--------- 218 (393)
T 1erj_A 169 YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG--------------VTTVAVSP-------GD--------- 218 (393)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC--------------EEEEEECS-------TT---------
T ss_pred EEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCC--------------cEEEEEEC-------CC---------
Confidence 9999987 5666654 66899999999987766642111 12233321 00
Q ss_pred cCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEE
Q 004255 273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV 352 (765)
Q Consensus 273 s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~ 352 (765)
+.+ ++.+..||.|+
T Consensus 219 ------------------~~~------------------------------------------------l~~~s~d~~v~ 232 (393)
T 1erj_A 219 ------------------GKY------------------------------------------------IAAGSLDRAVR 232 (393)
T ss_dssp ------------------CCE------------------------------------------------EEEEETTSCEE
T ss_pred ------------------CCE------------------------------------------------EEEEcCCCcEE
Confidence 000 12345689999
Q ss_pred EEECCCCcEEEEe-------ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255 353 VKDFVTRAIISQF-------KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (765)
Q Consensus 353 IwDl~s~~~i~~~-------~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l 425 (765)
|||+.+++.+..+ .+|..+|.+++|+|+|++|++++.|| .|+|||+........ ........+...+
T Consensus 233 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~-~v~~wd~~~~~~~~~-----~~~~~~~~~~~~~ 306 (393)
T 1erj_A 233 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR-SVKLWNLQNANNKSD-----SKTPNSGTCEVTY 306 (393)
T ss_dssp EEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS-EEEEEEC--------------------CEEEEE
T ss_pred EEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC-EEEEEECCCCCCccc-----ccCCCCCcceEEE
Confidence 9999999888777 68999999999999999999999966 599999864210000 0000011234444
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
. |+ ...|.+++|+||+++|++++.|++|+|||+........+.+|.
T Consensus 307 ~-~h-~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~ 352 (393)
T 1erj_A 307 I-GH-KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR 352 (393)
T ss_dssp E-CC-SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred e-cc-cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC
Confidence 3 43 3569999999999999999999999999998754444555663
No 18
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.92 E-value=4e-22 Score=209.32 Aligned_cols=253 Identities=13% Similarity=0.152 Sum_probs=187.7
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
..+|++.|..+.|.. .++.|++|..+| ++|||+. .+++...+..|.++|..+++.|+.
T Consensus 19 ~~gh~~~v~~~~~s~-------~~~~l~s~~~dg~i~iw~~~-~~~~~~~~~~h~~~v~~~~~~~~~------------- 77 (312)
T 4ery_A 19 LAGHTKAVSSVKFSP-------NGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS------------- 77 (312)
T ss_dssp ECCCSSCEEEEEECT-------TSSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTS-------------
T ss_pred EcccCCcEEEEEECC-------CCCEEEEeeCCCeEEEEeCC-CcccchhhccCCCceEEEEEcCCC-------------
Confidence 456888999999965 256788887776 9999995 577888899999999999999752
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV 207 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV 207 (765)
.+|++.+. +++|++||+++++++..+..+ ..|.++.+++ ++|++
T Consensus 78 ~~l~s~~~---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 124 (312)
T 4ery_A 78 NLLVSASD---------------------------------DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 124 (312)
T ss_dssp SEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred CEEEEECC---------------------------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 36654221 368999999999999999865 6899999987 57776
Q ss_pred Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (765)
Q Consensus 208 ~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~ 286 (765)
+. ++.|++||+.+++++..+..|..+ ...++++| +.
T Consensus 125 ~~~d~~i~iwd~~~~~~~~~~~~~~~~-------------v~~~~~~~-------~~----------------------- 161 (312)
T 4ery_A 125 GSFDESVRIWDVKTGKCLKTLPAHSDP-------------VSAVHFNR-------DG----------------------- 161 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSC-------------EEEEEECT-------TS-----------------------
T ss_pred EeCCCcEEEEECCCCEEEEEecCCCCc-------------EEEEEEcC-------CC-----------------------
Confidence 55 568999999999888877665442 12233322 10
Q ss_pred CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (765)
Q Consensus 287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~ 366 (765)
. .++.+..||.|+|||+.+++.+..+.
T Consensus 162 ----~-------------------------------------------------~l~~~~~d~~i~~wd~~~~~~~~~~~ 188 (312)
T 4ery_A 162 ----S-------------------------------------------------LIVSSSYDGLCRIWDTASGQCLKTLI 188 (312)
T ss_dssp ----S-------------------------------------------------EEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ----C-------------------------------------------------EEEEEeCCCcEEEEECCCCceeeEEe
Confidence 0 01133568899999999998887764
Q ss_pred -cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc--cEEEEEEccCC
Q 004255 367 -AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYS 443 (765)
Q Consensus 367 -aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a--~I~slaFSpDg 443 (765)
.|..+|.+++|+|+|++|++++.|| .|+|||+.. + ..+..+. ++... .+....+.+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~-------~----------~~~~~~~-~~~~~~~~~~~~~~~~~~ 249 (312)
T 4ery_A 189 DDDNPPVSFVKFSPNGKYILAATLDN-TLKLWDYSK-------G----------KCLKTYT-GHKNEKYCIFANFSVTGG 249 (312)
T ss_dssp CSSCCCEEEEEECTTSSEEEEEETTT-EEEEEETTT-------T----------EEEEEEC-SSCCSSSCCCEEEECSSS
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCC-eEEEEECCC-------C----------cEEEEEE-ecCCceEEEEEEEEeCCC
Confidence 5677899999999999999999966 599999965 3 3455553 33221 13333344789
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255 444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 444 ~~Las~S~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
++|++++.||+|+|||+........+..|.
T Consensus 250 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~ 279 (312)
T 4ery_A 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 279 (312)
T ss_dssp CEEEECCTTSCEEEEETTTCCEEEEECCCS
T ss_pred cEEEEECCCCEEEEEECCCchhhhhhhccC
Confidence 999999999999999998765555566664
No 19
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.92 E-value=5.4e-23 Score=219.82 Aligned_cols=259 Identities=18% Similarity=0.135 Sum_probs=179.0
Q ss_pred ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 004255 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (765)
Q Consensus 97 ~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~ 176 (765)
+.+.+..|+++|.+|++.|+.. ....+|+..+ .+++|+
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~---------~~~~~l~tgs---------------------------------~D~~v~ 61 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKK---------ENSETVVTGS---------------------------------LDDLVK 61 (321)
T ss_dssp EEEETTSSSSCEEEEEEC----------------CEEEEEE---------------------------------TTSCEE
T ss_pred eeeecccCCCcEEEEEEecCCC---------CCCCEEEEEc---------------------------------CCCCEE
Confidence 3445567999999999987521 1123665422 136899
Q ss_pred EEECCCCeEE--EEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCcccccccccee
Q 004255 177 FYSFQSHCYE--HVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM 250 (765)
Q Consensus 177 lWdlktg~~v--~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~ 250 (765)
|||+.+++.. .+++.+ ..|.++++++ .+|+++. ++.|++||+.+++++.++..++.. ...+
T Consensus 62 vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~-------------~~~~ 128 (321)
T 3ow8_A 62 VWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD-------------AWTL 128 (321)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC-------------CCCE
T ss_pred EEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCcc-------------EEEE
Confidence 9999887654 345544 5899999987 5666654 668999999999998888766542 2458
Q ss_pred EEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCC
Q 004255 251 AVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (765)
Q Consensus 251 Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~ 328 (765)
+++| ++||+++.+..+ ..|+..+. ... .++..+ ......
T Consensus 129 ~~spdg~~l~~g~~dg~v-----~i~~~~~~------------~~~----------------~~~~~~------~~~v~~ 169 (321)
T 3ow8_A 129 AFSPDSQYLATGTHVGKV-----NIFGVESG------------KKE----------------YSLDTR------GKFILS 169 (321)
T ss_dssp EECTTSSEEEEECTTSEE-----EEEETTTC------------SEE----------------EEEECS------SSCEEE
T ss_pred EECCCCCEEEEEcCCCcE-----EEEEcCCC------------cee----------------EEecCC------CceEEE
Confidence 8888 889988765311 11221110 000 001000 000112
Q ss_pred ccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 004255 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (765)
Q Consensus 329 ~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~s 408 (765)
..++++++ .++.+..||.|+|||+.+++.+..+.+|..+|.+|+|+|+|++||+|+.||+ |+|||+..
T Consensus 170 ~~~spdg~----~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~------- 237 (321)
T 3ow8_A 170 IAYSPDGK----YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQH------- 237 (321)
T ss_dssp EEECTTSS----EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTT-------
T ss_pred EEECCCCC----EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCC-------
Confidence 22333333 2456788999999999999999999999999999999999999999999775 99999964
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 409 G~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
+ ..+..+. |+ ...|.+++|+||+++|++++.|++|+|||+........+..|.
T Consensus 238 ~----------~~~~~~~-~h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~ 290 (321)
T 3ow8_A 238 A----------NLAGTLS-GH-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ 290 (321)
T ss_dssp C----------CEEEEEC-CC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred c----------ceeEEEc-CC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC
Confidence 2 3455554 43 4579999999999999999999999999998755544555553
No 20
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.91 E-value=3.6e-22 Score=218.67 Aligned_cols=241 Identities=12% Similarity=0.129 Sum_probs=174.0
Q ss_pred EEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEE
Q 004255 59 VTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVA 137 (765)
Q Consensus 59 v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~ 137 (765)
|..+.|.. +++.|++|..+| ++|||++ .+++...+..|.++|..+++.|+ ..+|++.+
T Consensus 126 v~~v~~s~-------dg~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~p~-------------~~~l~s~s 184 (393)
T 1erj_A 126 IRSVCFSP-------DGKFLATGAEDRLIRIWDIE-NRKIVMILQGHEQDIYSLDYFPS-------------GDKLVSGS 184 (393)
T ss_dssp EEEEEECT-------TSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTT-------------SSEEEEEE
T ss_pred EEEEEECC-------CCCEEEEEcCCCeEEEEECC-CCcEEEEEccCCCCEEEEEEcCC-------------CCEEEEec
Confidence 55555543 367888888776 9999995 56777888999999999999874 23565422
Q ss_pred cCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC---CeEEEEe-CCeE
Q 004255 138 GEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGL-ATQI 213 (765)
Q Consensus 138 ~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~---~~LaV~~-~~~I 213 (765)
. +++|++||+++++++.++..+..|..+++++ ++|+++. ++.|
T Consensus 185 ~---------------------------------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v 231 (393)
T 1erj_A 185 G---------------------------------DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 231 (393)
T ss_dssp T---------------------------------TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred C---------------------------------CCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence 1 3699999999999999999999999999986 5777765 5679
Q ss_pred EEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcc
Q 004255 214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSL 293 (765)
Q Consensus 214 ~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gsl 293 (765)
++||+.+++++..+...... ...+ ......++|+| +
T Consensus 232 ~iwd~~~~~~~~~~~~~~~~-~~~h-----~~~v~~v~~~~-------~------------------------------- 267 (393)
T 1erj_A 232 RVWDSETGFLVERLDSENES-GTGH-----KDSVYSVVFTR-------D------------------------------- 267 (393)
T ss_dssp EEEETTTCCEEEEEC-------CCC-----SSCEEEEEECT-------T-------------------------------
T ss_pred EEEECCCCcEEEeecccccC-CCCC-----CCCEEEEEECC-------C-------------------------------
Confidence 99999999877665321110 0000 00011222221 0
Q ss_pred eeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC------------CcE
Q 004255 294 VARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT------------RAI 361 (765)
Q Consensus 294 va~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s------------~~~ 361 (765)
++ .+++++.||.|+|||+.+ +.+
T Consensus 268 -----------------------------------------g~----~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~ 302 (393)
T 1erj_A 268 -----------------------------------------GQ----SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 302 (393)
T ss_dssp -----------------------------------------SS----EEEEEETTSEEEEEEC---------------CE
T ss_pred -----------------------------------------CC----EEEEEeCCCEEEEEECCCCCCcccccCCCCCcc
Confidence 00 112445788999999875 345
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 004255 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (765)
Q Consensus 362 i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp 441 (765)
...+.+|...|.+++|+|+|.+|++++.|| .|+|||+.. + ..+..+. |+ ...|.+++|++
T Consensus 303 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~-~v~iwd~~~-------~----------~~~~~l~-~h-~~~v~~v~~~~ 362 (393)
T 1erj_A 303 EVTYIGHKDFVLSVATTQNDEYILSGSKDR-GVLFWDKKS-------G----------NPLLMLQ-GH-RNSVISVAVAN 362 (393)
T ss_dssp EEEEECCSSCEEEEEECGGGCEEEEEETTS-EEEEEETTT-------C----------CEEEEEE-CC-SSCEEEEEECS
T ss_pred eEEEecccCcEEEEEECCCCCEEEEEeCCC-eEEEEECCC-------C----------eEEEEEC-CC-CCCEEEEEecC
Confidence 667889999999999999999999999966 599999865 3 3566664 53 45699999986
Q ss_pred ------CCCEEEEEeCCCcEEEEeCCC
Q 004255 442 ------YSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 442 ------Dg~~Las~S~dgTVhIwdl~~ 462 (765)
|+++||+++.||+|+||++..
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccc
Confidence 789999999999999999865
No 21
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.91 E-value=6.7e-22 Score=217.91 Aligned_cols=273 Identities=14% Similarity=0.131 Sum_probs=189.1
Q ss_pred CeEEEEEecCcEEEEEccCCCcceEeee--eccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255 75 KQVLLLGYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (765)
Q Consensus 75 ~~vL~~G~~~G~qVWdv~~~g~~~ells--~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~ 152 (765)
.++|++|.++.++|||++ ++++.+++. .|.+.|.+|+|.|+ ..+||+.+.
T Consensus 116 ~n~lAvgld~tV~lWd~~-tg~~~~~~~~~~~~~~V~sv~fspd-------------g~~lasgs~-------------- 167 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIKE-------------GNYLAVGTS-------------- 167 (420)
T ss_dssp TSEEEEEETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECTT-------------SSEEEEEET--------------
T ss_pred CCEEEEEeCCEEEEEECC-CCCEEEEEEecCCCCcEEEEEECCC-------------CCEEEEEEC--------------
Confidence 569999998889999995 688888776 45578999999975 236765221
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEEEeC-CeEEEEECCCCc-eeEEEEe
Q 004255 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGLA-TQIYCFDALTLE-NKFSVLT 229 (765)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV~~~-~~I~iwD~~t~~-~l~tl~t 229 (765)
+++|+|||++++++++++..+ ..|.++.+++++|+++.. ..|++||..+.. ...++..
T Consensus 168 -------------------Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~ 228 (420)
T 4gga_A 168 -------------------SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG 228 (420)
T ss_dssp -------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred -------------------CCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecc
Confidence 368999999999999999865 589999999999988765 579999988754 3455556
Q ss_pred cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhc
Q 004255 230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (765)
Q Consensus 230 ~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~ 307 (765)
|... ...+.+.+ ++|++++.+..+ ..|+..+......
T Consensus 229 h~~~-------------~~~~~~~~~g~~l~s~~~D~~v-----~i~~~~~~~~~~~----------------------- 267 (420)
T 4gga_A 229 HSQE-------------VCGLRWAPDGRHLASGGNDNLV-----NVWPSAPGEGGWV----------------------- 267 (420)
T ss_dssp CSSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEESSCCSSCSC-----------------------
T ss_pred cccc-------------eeeeeecCCCCeeeeeeccccc-----eEEeeccccccce-----------------------
Confidence 5542 23456666 788887765311 1222211100000
Q ss_pred ccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEE
Q 004255 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTA 387 (765)
Q Consensus 308 G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATa 387 (765)
..+.+..+. +......+.+... .....+.+..||+|+|||+.+++++..+..| ..+.++.|+|++..|+++
T Consensus 268 -~~~~~~~~~------~~V~~~~~~p~~~-~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~ 338 (420)
T 4gga_A 268 -PLQTFTQHQ------GAVKAVAWCPWQS-NVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG 338 (420)
T ss_dssp -CSEEECCCS------SCEEEEEECTTCT-TEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEE
T ss_pred -eeeeecccC------CceeeeeeCCCcc-cEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEE
Confidence 000000000 0000111111111 0111234678999999999999999988877 568899999999999987
Q ss_pred E--cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255 388 S--VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 388 S--~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g 464 (765)
+ .|+ .|+|||+.. + .++.+|. || ...|++|+|||||++||+++.|+||+|||+....
T Consensus 339 sg~~d~-~I~iwd~~~-------~----------~~v~~l~-gH-~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 339 HGFAQN-QLVIWKYPT-------M----------AKVAELK-GH-TSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp ECTTTC-CEEEEETTT-------C----------CEEEEEC-CC-SSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred EecCCC-EEEEEECCC-------C----------cEEEEEc-CC-CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 6 445 599999854 3 5777775 54 4579999999999999999999999999997643
No 22
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.91 E-value=1.5e-22 Score=213.60 Aligned_cols=214 Identities=13% Similarity=0.210 Sum_probs=166.6
Q ss_pred ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 004255 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (765)
Q Consensus 97 ~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~ 176 (765)
+.+++..|.+.|..|++.|+ .++||+.+. +++|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~-------------~~~l~s~~~---------------------------------dg~v~ 38 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPT-------------EPWVLTTLY---------------------------------SGRVE 38 (304)
T ss_dssp CEEEEEEECSCEEEEEECSS-------------SSEEEEEET---------------------------------TSEEE
T ss_pred eEEeecCCCCceEEEEECCC-------------CCEEEEEcC---------------------------------CCcEE
Confidence 56789999999999999975 347765321 36999
Q ss_pred EEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEE
Q 004255 177 FYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAV 252 (765)
Q Consensus 177 lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Al 252 (765)
|||+.+++.+.++..+ .+|.+++|++ ++|+++. ++.|++||+.+++++.++..|+.+ ...+++
T Consensus 39 lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~-------------v~~~~~ 105 (304)
T 2ynn_A 39 LWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY-------------IRSIAV 105 (304)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEE
T ss_pred EEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCc-------------EEEEEE
Confidence 9999999999999865 5899999987 6777765 557999999999999998887652 234444
Q ss_pred cc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCcc
Q 004255 253 GP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS 330 (765)
Q Consensus 253 sp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s 330 (765)
+| ++|
T Consensus 106 ~~~~~~l------------------------------------------------------------------------- 112 (304)
T 2ynn_A 106 HPTKPYV------------------------------------------------------------------------- 112 (304)
T ss_dssp CSSSSEE-------------------------------------------------------------------------
T ss_pred cCCCCEE-------------------------------------------------------------------------
Confidence 33 111
Q ss_pred CCCccccccccccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 004255 331 PNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (765)
Q Consensus 331 ~s~~~~~~~~~~~~~~~dG~V~IwDl~s~-~~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~s 408 (765)
++++.||+|+|||+.++ .....+.+|...|.+++|+| ++.+||||+.|+ .|+|||+..
T Consensus 113 ------------~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~-~v~iwd~~~------- 172 (304)
T 2ynn_A 113 ------------LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR-TVKVWSLGQ------- 172 (304)
T ss_dssp ------------EEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS-EEEEEETTC-------
T ss_pred ------------EEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC-eEEEEECCC-------
Confidence 13456899999999887 45677899999999999999 689999999966 599999854
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSH--YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 409 G~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp--Dg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
+ ...+.+..++ ...|..++|+| |+++|++++.|++|+|||+........+..|.
T Consensus 173 ~----------~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~ 228 (304)
T 2ynn_A 173 S----------TPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228 (304)
T ss_dssp S----------SCSEEEECCC-TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred C----------CccceeccCC-cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC
Confidence 1 1334444443 34588899986 78999999999999999998766566677775
No 23
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.91 E-value=3.4e-22 Score=232.13 Aligned_cols=259 Identities=16% Similarity=0.142 Sum_probs=183.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC-CcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA-SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~-g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~s 129 (765)
..+|++.|..+.|.. +++.|++|..+| ++|||+... ..+...+..|.++|..|+|.|+.
T Consensus 55 ~~~h~~~v~~~~~sp-------dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg------------ 115 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSP-------SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES------------ 115 (611)
T ss_dssp ECCCSSCEEEEEECT-------TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS------------
T ss_pred ecCCCCceEEEEECC-------CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCC------------
Confidence 456788888888854 467999999887 999999532 23445677889999999999852
Q ss_pred CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCC---eE
Q 004255 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR---IV 205 (765)
Q Consensus 130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~---~L 205 (765)
.+||+++.+.. ...+|++|| +++.+.++..+ ..|.+|+|+|. +|
T Consensus 116 -~~l~~~~~~~~-----------------------------~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l 163 (611)
T 1nr0_A 116 -KRIAAVGEGRE-----------------------------RFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRI 163 (611)
T ss_dssp -CEEEEEECCSS-----------------------------CSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEE
T ss_pred -CEEEEEECCCC-----------------------------ceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEE
Confidence 26665432110 014788888 46667777655 58999999983 46
Q ss_pred EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCC
Q 004255 206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (765)
Q Consensus 206 aV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~ 282 (765)
+++. ++.|++||..+++++.++.+|..+ ...++|+| ++||
T Consensus 164 ~s~s~D~~v~lwd~~~~~~~~~l~~H~~~-------------V~~v~fspdg~~la------------------------ 206 (611)
T 1nr0_A 164 ISGSDDNTVAIFEGPPFKFKSTFGEHTKF-------------VHSVRYNPDGSLFA------------------------ 206 (611)
T ss_dssp EEEETTSCEEEEETTTBEEEEEECCCSSC-------------EEEEEECTTSSEEE------------------------
T ss_pred EEEeCCCeEEEEECCCCeEeeeeccccCc-------------eEEEEECCCCCEEE------------------------
Confidence 7655 567999999999888888777652 23455543 2222
Q ss_pred CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE
Q 004255 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (765)
Q Consensus 283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i 362 (765)
+++.||+|+|||+.+++.+
T Consensus 207 -------------------------------------------------------------s~s~D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 207 -------------------------------------------------------------STGGDGTIVLYNGVDGTKT 225 (611)
T ss_dssp -------------------------------------------------------------EEETTSCEEEEETTTCCEE
T ss_pred -------------------------------------------------------------EEECCCcEEEEECCCCcEe
Confidence 3456889999999999999
Q ss_pred EEec-------cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC----C----------------------CC
Q 004255 363 SQFK-------AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS----G----------------------SG 409 (765)
Q Consensus 363 ~~~~-------aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~----~----------------------sG 409 (765)
..+. +|..+|.+++|+|||++|||++.|+ +|+|||+....... . .|
T Consensus 226 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~-~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~ 304 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 304 (611)
T ss_dssp EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred eeeccccccccccCCCEEEEEECCCCCEEEEEeCCC-eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCC
Confidence 8884 8999999999999999999999965 59999986521000 0 00
Q ss_pred CCccccCC-cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 410 NHKYDWNS-SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 410 ~~~~~~~~-s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
. -..|+. ....+.. ..|+ ...|++++|||||++|++++.|++|++||+...
T Consensus 305 ~-i~~~~~~~~~~~~~-~~gh-~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 305 F-INFVNPELGSIDQV-RYGH-NKAITALSSSADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp C-EEEEETTTTEEEEE-ECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred c-EEEEeCCCCCcceE-EcCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence 0 000000 0011122 2343 457999999999999999999999999999864
No 24
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.91 E-value=9.2e-22 Score=212.90 Aligned_cols=222 Identities=14% Similarity=0.095 Sum_probs=169.9
Q ss_pred CCeEEEEEecCc-EEEEEccCC-----CcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCC
Q 004255 74 FKQVLLLGYQNG-FQVLDVEDA-----SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPG 147 (765)
Q Consensus 74 ~~~vL~~G~~~G-~qVWdv~~~-----g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~ 147 (765)
.+..|++|..++ ++||++... ......+..|.+.|..+.+.|+. ..|++.+.
T Consensus 117 ~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~~l~t~s~--------- 174 (354)
T 2pbi_B 117 SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-------------MQILTASG--------- 174 (354)
T ss_dssp TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-------------SEEEEEET---------
T ss_pred CCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-------------CEEEEEeC---------
Confidence 467888888776 899998532 12445677899999999998742 25554332
Q ss_pred CCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC----CeEEEEe-CCeEEEEECCCC
Q 004255 148 QNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP----RIVAVGL-ATQIYCFDALTL 221 (765)
Q Consensus 148 ~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~----~~LaV~~-~~~I~iwD~~t~ 221 (765)
+++|++||+++++++.++..+ ..|.++++++ ++|+++. ++.|++||+.++
T Consensus 175 ------------------------D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~ 230 (354)
T 2pbi_B 175 ------------------------DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230 (354)
T ss_dssp ------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC
T ss_pred ------------------------CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 369999999999999999865 5898888865 4777655 568999999999
Q ss_pred ceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehh
Q 004255 222 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 299 (765)
Q Consensus 222 ~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~ 299 (765)
+++.++..|..+ ...++++| ++|
T Consensus 231 ~~~~~~~~h~~~-------------v~~v~~~p~~~~l------------------------------------------ 255 (354)
T 2pbi_B 231 QCVQAFETHESD-------------VNSVRYYPSGDAF------------------------------------------ 255 (354)
T ss_dssp CEEEEECCCSSC-------------EEEEEECTTSSEE------------------------------------------
T ss_pred cEEEEecCCCCC-------------eEEEEEeCCCCEE------------------------------------------
Confidence 988888766552 23344433 111
Q ss_pred hhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC--CCCeEEEEE
Q 004255 300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH--TSPISALCF 377 (765)
Q Consensus 300 d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH--~~~IsaLaF 377 (765)
++++.||+|+|||+.+++.+..+..+ ...+.+++|
T Consensus 256 -------------------------------------------~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (354)
T 2pbi_B 256 -------------------------------------------ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF 292 (354)
T ss_dssp -------------------------------------------EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred -------------------------------------------EEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence 23456889999999998887777644 457999999
Q ss_pred CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEE
Q 004255 378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (765)
Q Consensus 378 SpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhI 457 (765)
+|+|++|++++.|++ |+|||+.. + ..+..+. |+ ...|.+++|||||++||+++.|++|+|
T Consensus 293 s~~g~~l~~g~~d~~-i~vwd~~~-------~----------~~~~~l~-~h-~~~v~~l~~spdg~~l~sgs~D~~v~v 352 (354)
T 2pbi_B 293 SLSGRLLFAGYNDYT-INVWDVLK-------G----------SRVSILF-GH-ENRVSTLRVSPDGTAFCSGSWDHTLRV 352 (354)
T ss_dssp CTTSSEEEEEETTSC-EEEEETTT-------C----------SEEEEEC-CC-SSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred eCCCCEEEEEECCCc-EEEEECCC-------C----------ceEEEEE-CC-CCcEEEEEECCCCCEEEEEcCCCCEEe
Confidence 999999999999765 99999854 3 3555554 43 457999999999999999999999999
Q ss_pred Ee
Q 004255 458 FV 459 (765)
Q Consensus 458 wd 459 (765)
|+
T Consensus 353 W~ 354 (354)
T 2pbi_B 353 WA 354 (354)
T ss_dssp EC
T ss_pred cC
Confidence 96
No 25
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.91 E-value=7.4e-22 Score=212.39 Aligned_cols=257 Identities=16% Similarity=0.163 Sum_probs=175.1
Q ss_pred CCCCC-cEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcc--e-EeeeeccCCEEEEEEecCCCCCCCCCCcc
Q 004255 53 EDLKD-QVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF--N-ELVSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (765)
Q Consensus 53 ~~~~~-~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~--~-ells~~dg~V~~v~~lP~p~~~~~~d~f~ 127 (765)
.++++ .|..+.|.. ++++|++|..+| ++|||++. +.. . .+...|.+.|..+++.|+
T Consensus 12 ~~h~~~~v~~l~~sp-------~g~~las~~~D~~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~sp~----------- 72 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNP-------AGTLLASCGGDRRIRIWGTEG-DSWICKSVLSEGHQRTVRKVAWSPC----------- 72 (345)
T ss_dssp CCSTTSCEEEEEECT-------TSSCEEEEETTSCEEEEEEET-TEEEEEEEECSSCSSCEEEEEECTT-----------
T ss_pred cCCCCCcEEEEEECC-------CCCEEEEEcCCCeEEEEEcCC-CcceeeeeeccccCCcEEEEEECCC-----------
Confidence 45566 777777854 356788888776 99999964 322 2 233578899999999975
Q ss_pred ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeCC-CCEEEEEecC--
Q 004255 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRFR-SSVCMVRCSP-- 202 (765)
Q Consensus 128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~--~v~tL~~~-s~V~sV~~s~-- 202 (765)
..+||+.+. +++|+|||+.+++ ++.++..+ ..|.+|++++
T Consensus 73 --g~~l~s~s~---------------------------------D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 117 (345)
T 3fm0_A 73 --GNYLASASF---------------------------------DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG 117 (345)
T ss_dssp --SSEEEEEET---------------------------------TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS
T ss_pred --CCEEEEEEC---------------------------------CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC
Confidence 236665321 3689999998774 56777754 6899999987
Q ss_pred CeEEEEe-CCeEEEEECCCCceeE---EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCC
Q 004255 203 RIVAVGL-ATQIYCFDALTLENKF---SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT 278 (765)
Q Consensus 203 ~~LaV~~-~~~I~iwD~~t~~~l~---tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt 278 (765)
++|+++. ++.|++||+.+.+... .+..|..+ ...++++| +.
T Consensus 118 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~-------------v~~~~~~p-------~~--------------- 162 (345)
T 3fm0_A 118 NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD-------------VKHVVWHP-------SQ--------------- 162 (345)
T ss_dssp SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC-------------EEEEEECS-------SS---------------
T ss_pred CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC-------------eEEEEECC-------CC---------------
Confidence 6777765 5679999998765332 23233221 12233322 10
Q ss_pred CCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC
Q 004255 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358 (765)
Q Consensus 279 ~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s 358 (765)
. .++.+..||+|+|||+.+
T Consensus 163 ------------~-------------------------------------------------~l~s~s~d~~i~~w~~~~ 181 (345)
T 3fm0_A 163 ------------E-------------------------------------------------LLASASYDDTVKLYREEE 181 (345)
T ss_dssp ------------S-------------------------------------------------CEEEEETTSCEEEEEEET
T ss_pred ------------C-------------------------------------------------EEEEEeCCCcEEEEEecC
Confidence 0 012345688999999988
Q ss_pred Cc--EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEE
Q 004255 359 RA--IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQD 436 (765)
Q Consensus 359 ~~--~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~s 436 (765)
++ +...+.+|..+|.+|+|+|+|++||+++.|++ |+|||+.... ...+...........++..+. |.+...|++
T Consensus 182 ~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~ 257 (345)
T 3fm0_A 182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPG--NEQGVACSGSDPSWKCICTLS-GFHSRTIYD 257 (345)
T ss_dssp TEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTT--CTTCCCCC---CEEEEEEEEC-SSCSSCEEE
T ss_pred CCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCC--CCccceeeccCCccceeEEec-CCCCCcEEE
Confidence 75 45789999999999999999999999999775 9999973210 000000000011123444443 445567999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 437 ICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 437 laFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
++|+|++.+|++++.|++|+||++.+.
T Consensus 258 v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 258 IAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp EEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred EEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 999999999999999999999998753
No 26
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.91 E-value=6.4e-22 Score=209.13 Aligned_cols=316 Identities=10% Similarity=-0.019 Sum_probs=200.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeee-----ccCCEEEEEEecCCCCCCCCCCc
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSK-----RDGPVSFLQMQPFPVKDDGCEGF 126 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~-----~dg~V~~v~~lP~p~~~~~~d~f 126 (765)
.+++.+.|..+.|.... ......+++.+..+.++|||+.. ++....+.. |++.|..+++.|+..
T Consensus 14 ~~~h~~~v~~i~~~p~~--~~~~~~~~~~~~~~~v~vw~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------- 82 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHS--KEGDPLVFATVGSNRVTLYECHS-QGEIRLLQSYVDADADENFYTCAWTYDSN-------- 82 (366)
T ss_dssp ECTTCSCEEEEEECTTC--CTTSCEEEEEEETTEEEEEEECG-GGCEEEEEEEECSCTTCCEEEEEEEECTT--------
T ss_pred ecCCCCceEEEEEeccc--CCCCceEEEECCCCEEEEEEcCC-CcEEEeeeeccccCCCCcEEEEEeccCCC--------
Confidence 35688999999997521 01234577777777899999964 445555554 447799999998631
Q ss_pred cccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCCEEEEEecC---
Q 004255 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--- 202 (765)
Q Consensus 127 ~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~-~~s~V~sV~~s~--- 202 (765)
..+.+|++.+. +++|++||+.+++.+..+. +...|.++++++
T Consensus 83 -~~~~~l~~~~~---------------------------------dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 128 (366)
T 3k26_A 83 -TSHPLLAVAGS---------------------------------RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 128 (366)
T ss_dssp -TCCEEEEEEET---------------------------------TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT
T ss_pred -CCCCEEEEecC---------------------------------CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC
Confidence 11346655221 3689999999999999998 457999999976
Q ss_pred CeEEEEe-CCeEEEEECCCCceeEEEE---ecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCC
Q 004255 203 RIVAVGL-ATQIYCFDALTLENKFSVL---TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQN 276 (765)
Q Consensus 203 ~~LaV~~-~~~I~iwD~~t~~~l~tl~---t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~ 276 (765)
++|+++. ++.|++||+.+++.+..+. .|.. ....++++| ++|++++.+..+ ..|+.
T Consensus 129 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------------~v~~~~~~~~~~~l~~~~~dg~i-----~i~d~ 190 (366)
T 3k26_A 129 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD-------------EVLSADYDLLGEKIMSCGMDHSL-----KLWRI 190 (366)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS-------------CEEEEEECTTSSEEEEEETTSCE-----EEEES
T ss_pred CEEEEEeCCCeEEEEEeecCeEEEEecccccccC-------------ceeEEEECCCCCEEEEecCCCCE-----EEEEC
Confidence 5777765 5689999999998887773 3333 235678887 788888765311 12221
Q ss_pred CCCCCC-----CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeE
Q 004255 277 LTPSGV-----SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351 (765)
Q Consensus 277 lt~~~~-----s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V 351 (765)
.+.... ...++|.+..+... . ..........+.. .......+.++ +..++.+..||.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~------~~~~v~~~~~~------~~~l~~~~~d~~i 253 (366)
T 3k26_A 191 NSKRMMNAIKESYDYNPNKTNRPFI-S----QKIHFPDFSTRDI------HRNYVDCVRWL------GDLILSKSCENAI 253 (366)
T ss_dssp CSHHHHHHHHHHHTCCGGGCSSCCC-C----EEECCCSEEECSS------CSSCCCEEEEE------TTEEEEECSSSEE
T ss_pred CCCccccccceeEEecCCCCccccc-c----eeeccCccccccC------CcceEEEEEEc------CCEEEEEecCCEE
Confidence 110000 00000000000000 0 0000000000000 00111111111 1124567889999
Q ss_pred EEEECCCCc--------------EEEEeccCCCCeEEEEECCC--CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 004255 352 VVKDFVTRA--------------IISQFKAHTSPISALCFDPS--GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (765)
Q Consensus 352 ~IwDl~s~~--------------~i~~~~aH~~~IsaLaFSpd--G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~ 415 (765)
++||+.+++ .+..+.+|..+|.+++|+|+ |++||+++.||. |+|||+... .
T Consensus 254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~-i~vwd~~~~-------~----- 320 (366)
T 3k26_A 254 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK-LYVWDLEVE-------D----- 320 (366)
T ss_dssp EEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC-EEEEECCSS-------S-----
T ss_pred EEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc-EEEEECCCC-------C-----
Confidence 999998764 48889999999999999999 999999999775 999999652 0
Q ss_pred CCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 416 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 416 ~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
.....+..+....+...|++++|+||+++|++++.||+|+|||+.
T Consensus 321 -~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 321 -PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp -GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred -CccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 001244455422224679999999999999999999999999985
No 27
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.91 E-value=2e-22 Score=234.00 Aligned_cols=241 Identities=12% Similarity=0.126 Sum_probs=178.5
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEE
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL 134 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLa 134 (765)
++.++.-+.|+. +++.|+.|..+.++|||+. .++...++..|.++|.++++.|+ ..+||
T Consensus 17 ~~g~~~~~~~sp-------dg~~l~~~~~~~v~l~~~~-~~~~~~~~~~h~~~v~~~~~spd-------------g~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTP-------AGDKIQYCNGTSVYTVPVG-SLTDTEIYTEHSHQTTVAKTSPS-------------GYYCA 75 (611)
T ss_dssp CTTCCCCCEECT-------TSSEEEEEETTEEEEEETT-CSSCCEEECCCSSCEEEEEECTT-------------SSEEE
T ss_pred ccCceeEEeeCC-------CCCEEEeCCCCEEEEecCC-CcccCeEecCCCCceEEEEECCC-------------CcEEE
Confidence 455555555643 4678889988889999995 46677889999999999999985 23776
Q ss_pred EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeC-CCCEEEEEecC--CeEEEEe
Q 004255 135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRF-RSSVCMVRCSP--RIVAVGL 209 (765)
Q Consensus 135 vv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~--~v~tL~~-~s~V~sV~~s~--~~LaV~~ 209 (765)
+... +++|+|||+.+++ ...++.. ..+|.+|+|++ ++|+++.
T Consensus 76 sg~~---------------------------------d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~ 122 (611)
T 1nr0_A 76 SGDV---------------------------------HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVG 122 (611)
T ss_dssp EEET---------------------------------TSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEE
T ss_pred EEeC---------------------------------CCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEE
Confidence 5221 3699999997544 4556664 57999999998 6777655
Q ss_pred CC-----eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCC
Q 004255 210 AT-----QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (765)
Q Consensus 210 ~~-----~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~ 284 (765)
++ .|++|| +++.+.++.+|..+ ...++|+| +.
T Consensus 123 ~~~~~~~~v~~wd--~~~~~~~l~gh~~~-------------v~~v~f~p-------~~--------------------- 159 (611)
T 1nr0_A 123 EGRERFGHVFLFD--TGTSNGNLTGQARA-------------MNSVDFKP-------SR--------------------- 159 (611)
T ss_dssp CCSSCSEEEEETT--TCCBCBCCCCCSSC-------------EEEEEECS-------SS---------------------
T ss_pred CCCCceeEEEEee--CCCCcceecCCCCC-------------ceEEEECC-------CC---------------------
Confidence 42 588887 45555555555431 23344433 10
Q ss_pred CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE
Q 004255 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ 364 (765)
Q Consensus 285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~ 364 (765)
.. .+++++.|++|+|||..+++.+..
T Consensus 160 ------~~------------------------------------------------~l~s~s~D~~v~lwd~~~~~~~~~ 185 (611)
T 1nr0_A 160 ------PF------------------------------------------------RIISGSDDNTVAIFEGPPFKFKST 185 (611)
T ss_dssp ------SC------------------------------------------------EEEEEETTSCEEEEETTTBEEEEE
T ss_pred ------Ce------------------------------------------------EEEEEeCCCeEEEEECCCCeEeee
Confidence 00 012345789999999999999999
Q ss_pred eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec------ccccccEEEEE
Q 004255 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR------GITSATIQDIC 438 (765)
Q Consensus 365 ~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r------G~~~a~I~sla 438 (765)
|.+|...|.+++|+|||++||||+.|++ |+|||+.. | ..+..+.. | +...|++++
T Consensus 186 l~~H~~~V~~v~fspdg~~las~s~D~~-i~lwd~~~-------g----------~~~~~~~~~~~~~~~-h~~~V~~v~ 246 (611)
T 1nr0_A 186 FGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVD-------G----------TKTGVFEDDSLKNVA-HSGSVFGLT 246 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------C----------CEEEECBCTTSSSCS-SSSCEEEEE
T ss_pred eccccCceEEEEECCCCCEEEEEECCCc-EEEEECCC-------C----------cEeeeeccccccccc-cCCCEEEEE
Confidence 9999999999999999999999999775 99999865 3 34555532 3 445799999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 439 FSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 439 FSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
|+|||++|++++.|++|+|||+.....
T Consensus 247 ~spdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 247 WSPDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 999999999999999999999986543
No 28
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.91 E-value=6e-23 Score=218.20 Aligned_cols=266 Identities=15% Similarity=0.118 Sum_probs=173.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-cceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g-~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~s 129 (765)
..+|++.|..+.|+. .++.|++|..++ ++|||+.... .+...+..|.++|..|++.|.. .
T Consensus 9 ~~~H~~~V~~v~~s~-------~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~-----------~ 70 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDY-------YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM-----------Y 70 (316)
T ss_dssp -----CCEEEEEECG-------GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG-----------G
T ss_pred cccccCeEEEeeEcC-------CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC-----------C
Confidence 457889999999976 256888888776 9999996432 2345678899999999997521 1
Q ss_pred CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeC-CCCEEEEEecC----
Q 004255 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRF-RSSVCMVRCSP---- 202 (765)
Q Consensus 130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~--~v~tL~~-~s~V~sV~~s~---- 202 (765)
..+|+..+. +++|+|||+++++ .+.++.. ...|.+|++++
T Consensus 71 ~~~l~s~s~---------------------------------D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g 117 (316)
T 3bg1_A 71 GNILASCSY---------------------------------DRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYG 117 (316)
T ss_dssp SSCEEEEET---------------------------------TSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTC
T ss_pred CCEEEEEEC---------------------------------CCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCC
Confidence 236665332 3689999999884 5666654 46899999987
Q ss_pred CeEEEEe-CCeEEEEECCCCceeEE---EEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCC
Q 004255 203 RIVAVGL-ATQIYCFDALTLENKFS---VLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT 278 (765)
Q Consensus 203 ~~LaV~~-~~~I~iwD~~t~~~l~t---l~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt 278 (765)
.+|+++. ++.|++||+.+...... +..|.. ....++++|... .
T Consensus 118 ~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~-------------~v~~~~~~~~~~-----~--------------- 164 (316)
T 3bg1_A 118 LILACGSSDGAISLLTYTGEGQWEVKKINNAHTI-------------GCNAVSWAPAVV-----P--------------- 164 (316)
T ss_dssp SCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS-------------CBCCCEECCCCC-----C---------------
T ss_pred cEEEEEcCCCCEEEEecCCCCCcceeeeeccccC-------------CcceEEEccccC-----C---------------
Confidence 3677765 56799999887532211 112221 112344433100 0
Q ss_pred CCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC
Q 004255 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358 (765)
Q Consensus 279 ~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s 358 (765)
+.++.. +.+.. .. ....+++++.||+|+|||+..
T Consensus 165 ------------~~~~~~-------------------------~~~~~-----~~----~~~~l~sgs~D~~v~lWd~~~ 198 (316)
T 3bg1_A 165 ------------GSLIDH-------------------------PSGQK-----PN----YIKRFASGGCDNLIKLWKEEE 198 (316)
T ss_dssp -------------------------------------------CCSCC-----CC----CCCBEECCBTTSBCCEEEECT
T ss_pred ------------cccccc-------------------------ccccC-----cc----ccceEEEecCCCeEEEEEeCC
Confidence 000000 00000 00 001234677899999999976
Q ss_pred C---cEEEEeccCCCCeEEEEECCCC----CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc
Q 004255 359 R---AIISQFKAHTSPISALCFDPSG----TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS 431 (765)
Q Consensus 359 ~---~~i~~~~aH~~~IsaLaFSpdG----~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~ 431 (765)
. +.+..|.+|..+|.+++|+|++ .+|||+|.|| .|+|||+.... .+. .....+. + +.
T Consensus 199 ~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~-~v~iw~~~~~~----~~~---------~~~~~~~-~-~~ 262 (316)
T 3bg1_A 199 DGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG-RVFIWTCDDAS----SNT---------WSPKLLH-K-FN 262 (316)
T ss_dssp TSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC-EEEEEECSSTT----CCC---------CBCCEEE-E-CS
T ss_pred CCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC-eEEEEEccCcc----ccc---------hhhhhhh-c-CC
Confidence 5 4677899999999999999997 8999999966 59999985410 000 0111121 2 24
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 432 a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
..|++++|+|||++||+++.|++|+||++...
T Consensus 263 ~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 263 DVVWHVSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp SCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 57999999999999999999999999998754
No 29
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.1e-22 Score=209.78 Aligned_cols=262 Identities=11% Similarity=0.103 Sum_probs=180.1
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC-CCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED-ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~-~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~s 129 (765)
..+|++.|..+.|+. .++.|++|..+| ++|||++. .......+..|.++|.++++.|+. .
T Consensus 7 ~~~h~~~v~~~~~s~-------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~ 68 (379)
T 3jrp_A 7 ANAHNELIHDAVLDY-------YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------F 68 (379)
T ss_dssp EEECCCCEEEEEECS-------SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-----------G
T ss_pred ecCCcccEEEEEEcC-------CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC-----------C
Confidence 456889999999975 256888887766 99999963 344556778899999999998631 1
Q ss_pred CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEe-CCCCEEEEEecCC---
Q 004255 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSPR--- 203 (765)
Q Consensus 130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~--~v~tL~-~~s~V~sV~~s~~--- 203 (765)
..+|++++. +++|++||+.+++ .+..+. +...|.++++++.
T Consensus 69 ~~~l~s~~~---------------------------------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 115 (379)
T 3jrp_A 69 GTILASCSY---------------------------------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 115 (379)
T ss_dssp CSEEEEEET---------------------------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred CCEEEEecc---------------------------------CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC
Confidence 236665332 3589999999997 666665 3469999999864
Q ss_pred -eEEEEe-CCeEEEEECCCCcee--EEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCC
Q 004255 204 -IVAVGL-ATQIYCFDALTLENK--FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP 279 (765)
Q Consensus 204 -~LaV~~-~~~I~iwD~~t~~~l--~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~ 279 (765)
+|+++. ++.|++||+.+.+.. ..+..|..+ ...++++|...+.....
T Consensus 116 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~~~~~~---------------- 166 (379)
T 3jrp_A 116 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VNSASWAPATIEEDGEH---------------- 166 (379)
T ss_dssp SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC-------------EEEEEECCCC-----------------------
T ss_pred CEEEEecCCCcEEEEecCCCCceeeEEecCCCCc-------------eEEEEEcCccccccccc----------------
Confidence 566654 568999999887433 333334331 22344433111000000
Q ss_pred CCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 004255 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (765)
Q Consensus 280 ~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~ 359 (765)
.. .++. ..++.+..||.|+|||+.++
T Consensus 167 -----~~---------------------------------------------~~~~----~~l~~~~~dg~i~i~d~~~~ 192 (379)
T 3jrp_A 167 -----NG---------------------------------------------TKES----RKFVTGGADNLVKIWKYNSD 192 (379)
T ss_dssp -----------------------------------------------------CTT----CEEEEEETTSCEEEEEEETT
T ss_pred -----cC---------------------------------------------CCCC----CEEEEEeCCCeEEEEEecCC
Confidence 00 0000 01234567999999999876
Q ss_pred c----EEEEeccCCCCeEEEEECCC---CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE-eccccc
Q 004255 360 A----IISQFKAHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL-HRGITS 431 (765)
Q Consensus 360 ~----~i~~~~aH~~~IsaLaFSpd---G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l-~rG~~~ 431 (765)
+ .+..+.+|..+|.+++|+|+ |.+||+++.||. |+|||+.... . .....+ ....+.
T Consensus 193 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~iwd~~~~~-----~----------~~~~~~~~~~~~~ 256 (379)
T 3jrp_A 193 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQ-----G----------PWKKTLLKEEKFP 256 (379)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESSTT-----S----------CCEEEESSSSCCS
T ss_pred CcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EEEEeCCCCC-----c----------cceeeeeccccCC
Confidence 4 55678899999999999999 999999999775 9999986510 0 111222 222234
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 432 a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
..|++++|+|||++|++++.||+|+||++...
T Consensus 257 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 257 DVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 57999999999999999999999999999864
No 30
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.90 E-value=7.2e-22 Score=208.46 Aligned_cols=292 Identities=15% Similarity=0.125 Sum_probs=194.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcce-EeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFN-ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~-ells~~dg~V~~v~~lP~p~~~~~~d~f~~s 129 (765)
...+++.|..+.|.. +...++.|++|..+| ++|||++..+... ..+..|.++|..+++.|+
T Consensus 35 ~~~h~~~v~~~~~~~----~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------- 97 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSP----PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD------------- 97 (368)
T ss_dssp SSCCSSCEEEEEECC----TTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT-------------
T ss_pred ccCCCCceEEEEEcC----CCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC-------------
Confidence 456889999999976 211257888888876 9999997634443 788899999999999974
Q ss_pred CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEe--cC--CeE
Q 004255 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRC--SP--RIV 205 (765)
Q Consensus 130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~--s~--~~L 205 (765)
..+|++.+. +++|++||+.+++.+....+...|.++++ ++ ++|
T Consensus 98 ~~~l~s~~~---------------------------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 144 (368)
T 3mmy_A 98 GSKVFTASC---------------------------------DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCV 144 (368)
T ss_dssp SSEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEE
T ss_pred CCEEEEEcC---------------------------------CCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEE
Confidence 236665321 36899999999999998888899999999 65 456
Q ss_pred EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCC
Q 004255 206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (765)
Q Consensus 206 aV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~ 284 (765)
+++. ++.|++||+.+++.+.++..+.. ...+.+.+..++.+..+.. ...|+.....
T Consensus 145 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~---- 201 (368)
T 3mmy_A 145 MTGSWDKTLKFWDTRSSNPMMVLQLPER--------------CYCADVIYPMAVVATAERG-----LIVYQLENQP---- 201 (368)
T ss_dssp EEEETTSEEEEECSSCSSCSEEEECSSC--------------EEEEEEETTEEEEEEGGGC-----EEEEECSSSC----
T ss_pred EEccCCCcEEEEECCCCcEEEEEecCCC--------------ceEEEecCCeeEEEeCCCc-----EEEEEecccc----
Confidence 6654 66899999999998888875432 1123333333333322210 0111111100
Q ss_pred CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC---cE
Q 004255 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR---AI 361 (765)
Q Consensus 285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~---~~ 361 (765)
... . .+...... ...+ ............ .++.+..+|.|+|||+... ..
T Consensus 202 -------~~~-~-------~~~~~~~~--~~~~---------~~~~~~~~~~~~--~~~~~~~dg~i~i~~~~~~~~~~~ 253 (368)
T 3mmy_A 202 -------SEF-R-------RIESPLKH--QHRC---------VAIFKDKQNKPT--GFALGSIEGRVAIHYINPPNPAKD 253 (368)
T ss_dssp -------EEE-E-------ECCCSCSS--CEEE---------EEEEECTTSCEE--EEEEEETTSEEEEEESSCSCHHHH
T ss_pred -------chh-h-------hccccccC--CCce---------EEEcccCCCCCC--eEEEecCCCcEEEEecCCCCcccc
Confidence 000 0 00000000 0000 000000001111 1456778999999999987 56
Q ss_pred EEEeccCCC------------CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 004255 362 ISQFKAHTS------------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (765)
Q Consensus 362 i~~~~aH~~------------~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~ 429 (765)
+..+.+|.. +|.+++|+|+|++||+++.||. |+|||+.. + ..+..+. +
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~-------~----------~~~~~~~-~- 313 (368)
T 3mmy_A 254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDA-------R----------TKLKTSE-Q- 313 (368)
T ss_dssp SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTT-------T----------EEEEECC-C-
T ss_pred ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe-EEEEECCC-------C----------cEEEEec-C-
Confidence 778888876 7999999999999999999776 99999965 3 4566654 3
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255 430 TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 430 ~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g 464 (765)
+...|++++|+|||++||+++.|+..+.|++-...
T Consensus 314 ~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 314 LDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp CSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred CCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence 34579999999999999999999977777665433
No 31
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5e-21 Score=202.09 Aligned_cols=263 Identities=11% Similarity=0.065 Sum_probs=188.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
..++++.|..+.|.. .++.|++|..+| ++|||+. .++....+..|.++|..+++.|+ .
T Consensus 28 l~~h~~~v~~~~~s~-------~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~-------------~ 86 (369)
T 3zwl_B 28 LTGHERPLTQVKYNK-------EGDLLFSCSKDSSASVWYSL-NGERLGTLDGHTGTIWSIDVDCF-------------T 86 (369)
T ss_dssp EECCSSCEEEEEECT-------TSCEEEEEESSSCEEEEETT-TCCEEEEECCCSSCEEEEEECTT-------------S
T ss_pred EEEeeceEEEEEEcC-------CCCEEEEEeCCCEEEEEeCC-CchhhhhhhhcCCcEEEEEEcCC-------------C
Confidence 456888899999865 256788887776 9999995 57788888899999999999874 2
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG 208 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~ 208 (765)
.+|++.+. +++|++||+.+++.+..+.+...|.++++++ ++|+++
T Consensus 87 ~~l~s~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 133 (369)
T 3zwl_B 87 KYCVTGSA---------------------------------DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAI 133 (369)
T ss_dssp SEEEEEET---------------------------------TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CEEEEEeC---------------------------------CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEe
Confidence 36655321 3689999999999999999889999999998 677766
Q ss_pred eC------CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCC
Q 004255 209 LA------TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (765)
Q Consensus 209 ~~------~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~ 282 (765)
.. +.|++||+.+.+....+....... ...+ ....+...
T Consensus 134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~--------------~~~~----~~~~~~~~------------------ 177 (369)
T 3zwl_B 134 LDNVMKNPGSINIYEIERDSATHELTKVSEEP--------------IHKI----ITHEGLDA------------------ 177 (369)
T ss_dssp ECCBTTBCCEEEEEEEEECTTTCCEEEECSSC--------------SEEE----ECCTTCCC------------------
T ss_pred cCCccCCCCEEEEEEecCCccceeecccccce--------------eeec----cCCcCccc------------------
Confidence 54 589999987765443333211100 0000 00000000
Q ss_pred CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC-CcE
Q 004255 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAI 361 (765)
Q Consensus 283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s-~~~ 361 (765)
+. ...++++++ .++.+..+|.|++||+.+ ++.
T Consensus 178 -----------~~--------------------------------~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~ 210 (369)
T 3zwl_B 178 -----------AT--------------------------------VAGWSTKGK----YIIAGHKDGKISKYDVSNNYEY 210 (369)
T ss_dssp -----------EE--------------------------------EEEECGGGC----EEEEEETTSEEEEEETTTTTEE
T ss_pred -----------ee--------------------------------EEEEcCCCC----EEEEEcCCCEEEEEECCCCcEe
Confidence 00 000011111 123456789999999999 788
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 004255 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (765)
Q Consensus 362 i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp 441 (765)
+..+..|..+|.+++|+|+|++|++++.|| .|+|||+.. + ..+..+. ....+.+++|+|
T Consensus 211 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~v~d~~~-------~----------~~~~~~~---~~~~~~~~~~~~ 269 (369)
T 3zwl_B 211 VDSIDLHEKSISDMQFSPDLTYFITSSRDT-NSFLVDVST-------L----------QVLKKYE---TDCPLNTAVITP 269 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTS-EEEEEETTT-------C----------CEEEEEE---CSSCEEEEEECS
T ss_pred EEEEecCCCceeEEEECCCCCEEEEecCCc-eEEEEECCC-------C----------ceeeeec---CCCCceeEEecC
Confidence 999999999999999999999999999966 599999965 2 3555554 335699999999
Q ss_pred CCCEEEEEeCCC--------------cEEEEeCCCCCCCcccccc
Q 004255 442 YSQWIAIVSSKG--------------TCHVFVLSPFGGDSGFQTL 472 (765)
Q Consensus 442 Dg~~Las~S~dg--------------TVhIwdl~~~gg~~~~~~h 472 (765)
++++|++++.++ ++++||+........+..|
T Consensus 270 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 314 (369)
T 3zwl_B 270 LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH 314 (369)
T ss_dssp SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC
T ss_pred CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc
Confidence 999999999999 7888888765544444455
No 32
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.90 E-value=8.5e-22 Score=212.12 Aligned_cols=293 Identities=12% Similarity=0.074 Sum_probs=196.7
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEE
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLL 133 (765)
+++.|..+.|.. .++.|++|..+| ++|||. .++....+..|.++|..+++.|+ ..+|
T Consensus 107 ~~~~v~~~~~s~-------~~~~l~~~~~dg~i~i~~~--~~~~~~~~~~~~~~v~~~~~~~~-------------~~~l 164 (425)
T 1r5m_A 107 TTNQVTCLAWSH-------DGNSIVTGVENGELRLWNK--TGALLNVLNFHRAPIVSVKWNKD-------------GTHI 164 (425)
T ss_dssp -CBCEEEEEECT-------TSSEEEEEETTSCEEEEET--TSCEEEEECCCCSCEEEEEECTT-------------SSEE
T ss_pred CCCceEEEEEcC-------CCCEEEEEeCCCeEEEEeC--CCCeeeeccCCCccEEEEEECCC-------------CCEE
Confidence 455788877755 356888888776 999994 56677888889999999999874 2366
Q ss_pred EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-C---------------EEE
Q 004255 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-S---------------VCM 197 (765)
Q Consensus 134 avv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s-~---------------V~s 197 (765)
++++. +++|++||+.+++.+..+..+. . |.+
T Consensus 165 ~~~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (425)
T 1r5m_A 165 ISMDV---------------------------------ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVD 211 (425)
T ss_dssp EEEET---------------------------------TCCEEEEETTTTEEEEEECCC---------------CCCBSC
T ss_pred EEEec---------------------------------CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeE
Confidence 55321 2589999999999999998654 3 778
Q ss_pred EEecC-CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCcccc
Q 004255 198 VRCSP-RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLS 273 (765)
Q Consensus 198 V~~s~-~~LaV~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s 273 (765)
+.+++ ..++++ .++.|++||+.+++.+..+..|..+ ...++++| ++|++++.+..+ ..
T Consensus 212 ~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~d~~i-----~i 273 (425)
T 1r5m_A 212 VEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGP-------------ISVLEFNDTNKLLLSASDDGTL-----RI 273 (425)
T ss_dssp CEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSC-------------EEEEEEETTTTEEEEEETTSCE-----EE
T ss_pred EEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCc-------------eEEEEECCCCCEEEEEcCCCEE-----EE
Confidence 88776 445554 4568999999999888887766542 35678887 788887754211 12
Q ss_pred CCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEE
Q 004255 274 PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVV 353 (765)
Q Consensus 274 ~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~I 353 (765)
|+..+.. .+ +++..+. .....+.+++++ .++.+..+|.|+|
T Consensus 274 ~d~~~~~------------~~----------------~~~~~~~------~~i~~~~~~~~~-----~l~~~~~d~~i~i 314 (425)
T 1r5m_A 274 WHGGNGN------------SQ----------------NCFYGHS------QSIVSASWVGDD-----KVISCSMDGSVRL 314 (425)
T ss_dssp ECSSSBS------------CS----------------EEECCCS------SCEEEEEEETTT-----EEEEEETTSEEEE
T ss_pred EECCCCc------------cc----------------eEecCCC------ccEEEEEECCCC-----EEEEEeCCCcEEE
Confidence 2221110 00 0111100 001111112211 2345678999999
Q ss_pred EECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc--CCCCCCccccCC-cceEEEEEecccc
Q 004255 354 KDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR--SGSGNHKYDWNS-SHVHLYKLHRGIT 430 (765)
Q Consensus 354 wDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~--~~sG~~~~~~~~-s~~~l~~l~rG~~ 430 (765)
||+.+++.+..+..|..+|.+++|+|+|++||+++.+|. |+|||+...... ...+.....+.. ....+..+. ++.
T Consensus 315 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 392 (425)
T 1r5m_A 315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ-VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQ 392 (425)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC-EEEEECHHHHC--------------CEECCEEEEEC-CTT
T ss_pred EECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe-EEEEECCCCccceeeeecccccccCcccchhhhhhc-Ccc
Confidence 999999999999999999999999999999999999775 999998642100 000000000000 001445554 433
Q ss_pred cc-cEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 431 SA-TIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 431 ~a-~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
.. .|.+++|+||+++|++++.||+|+||+++
T Consensus 393 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 393 DNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred cCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 33 79999999999999999999999999985
No 33
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.90 E-value=3.1e-21 Score=200.48 Aligned_cols=273 Identities=12% Similarity=0.130 Sum_probs=179.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC---cceEeeeeccCCEEEEEEecCCCCCCCCCCcc
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g---~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~ 127 (765)
..+|++.|..+.|.. .++.|++|..+| ++|||+.... .+...+..|.++|.++++.|..
T Consensus 7 ~~gH~~~v~~~~~~~-------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------- 69 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDF-------YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE---------- 69 (351)
T ss_dssp ECCCSSCEEEEEECS-------SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG----------
T ss_pred CcccccceeEEEEcC-------CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC----------
Confidence 356889999999976 256788888777 9999996433 2455667889999999998720
Q ss_pred ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC---------eEEEEEeC-CCCEEE
Q 004255 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH---------CYEHVLRF-RSSVCM 197 (765)
Q Consensus 128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg---------~~v~tL~~-~s~V~s 197 (765)
...+|++.+. +++|++||+.++ +.+..+.. ...|.+
T Consensus 70 -d~~~l~s~~~---------------------------------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 115 (351)
T 3f3f_A 70 -YGRIIASASY---------------------------------DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS 115 (351)
T ss_dssp -GCSEEEEEET---------------------------------TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEE
T ss_pred -CCCEEEEEcC---------------------------------CCeEEEEecCCCcccccccCcceeeeecccCCceeE
Confidence 1236665321 368999999987 56777764 468999
Q ss_pred EEecCC----eEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-------ceEEEecCCce
Q 004255 198 VRCSPR----IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-------RWLAYASNTLL 265 (765)
Q Consensus 198 V~~s~~----~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp-------r~LAyas~~~~ 265 (765)
+++++. +|+++. ++.|++||+.+++.+..+...... ..+.+.+ ..+++.
T Consensus 116 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~----- 176 (351)
T 3f3f_A 116 VKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM--------------KVLSIPPANHLQSDFCLSWC----- 176 (351)
T ss_dssp EEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE--------------ESCSCCCSSCSCCCEEEEEC-----
T ss_pred EEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc--------------cccccccCCcccceeEEEec-----
Confidence 999863 666654 568999999988754433210000 0000000 000000
Q ss_pred ecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCcccccccccccc
Q 004255 266 LSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADM 345 (765)
Q Consensus 266 ~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~ 345 (765)
|+. .....++.+
T Consensus 177 --------------------------------------------------------p~~------------~~~~~l~~~ 188 (351)
T 3f3f_A 177 --------------------------------------------------------PSR------------FSPEKLAVS 188 (351)
T ss_dssp --------------------------------------------------------CCS------------SSCCEEEEE
T ss_pred --------------------------------------------------------cCC------------CCCcEEEEe
Confidence 000 000012345
Q ss_pred CCCCeEEEEECCCCcE--EEEeccCCCCeEEEEECCCC----CEEEEEEcCCCEEEEEeCCCCcccCC------------
Q 004255 346 DNAGIVVVKDFVTRAI--ISQFKAHTSPISALCFDPSG----TLLVTASVYGNNINIFRIMPSCMRSG------------ 407 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~~--i~~~~aH~~~IsaLaFSpdG----~lLATaS~dGt~IrVWdi~~~~~~~~------------ 407 (765)
..+|.+.+|+...++. +..+.+|..+|.+++|+|+| ++|++++.||. |+|||+........
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~ 267 (351)
T 3f3f_A 189 ALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR-IRIFKITEKLSPLASEESLTNSNMFD 267 (351)
T ss_dssp ETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC-EEEEEEEECC----------------
T ss_pred cCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe-EEEEeCCCCcCccccCCcccceeccC
Confidence 6788888888887765 77889999999999999998 89999999775 99999864210000
Q ss_pred ---------CCC-------CccccC-CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 408 ---------SGN-------HKYDWN-SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 408 ---------sG~-------~~~~~~-~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
.+. ....+. .....+..+. + +...|++++|+||+++|++++.||+|+||+++..+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 268 NSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-D-HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp -----------------------CCSEEEEEEEEEC-T-TSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred CCcccccccccccccccceeeeecccccccEEEEEe-c-ccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 000 000000 0113344443 4 345799999999999999999999999999987543
No 34
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.90 E-value=6.5e-21 Score=204.32 Aligned_cols=259 Identities=19% Similarity=0.177 Sum_probs=174.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC------CcceEeeeeccCCEEEEEEecCCCCCCCCC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA------SNFNELVSKRDGPVSFLQMQPFPVKDDGCE 124 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~------g~~~ells~~dg~V~~v~~lP~p~~~~~~d 124 (765)
..+|++.|..+.|...... ..++++|++|..++ ++|||+... +.....+..|.++|..+++.|+
T Consensus 17 l~gH~~~V~~~~~~~s~~~-~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-------- 87 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKE-NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE-------- 87 (343)
T ss_dssp EECCSSCEEEEEECCCSST-TCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS--------
T ss_pred eccchhhhhheeeEEEeec-CCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC--------
Confidence 4678899999988431111 11367888888876 999999642 2345678889999999999874
Q ss_pred CccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC-
Q 004255 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP- 202 (765)
Q Consensus 125 ~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~- 202 (765)
..+|+..+ .+++|+|||+++++.+.++..+ ..|.+|++++
T Consensus 88 -----~~~l~s~s---------------------------------~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~ 129 (343)
T 2xzm_R 88 -----NCFAISSS---------------------------------WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129 (343)
T ss_dssp -----TTEEEEEE---------------------------------TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS
T ss_pred -----CCEEEEEc---------------------------------CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC
Confidence 23665422 1369999999999999999854 6999999997
Q ss_pred -CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCC
Q 004255 203 -RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (765)
Q Consensus 203 -~~LaV~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~ 280 (765)
++|+++ .++.|++||+.. +....+...... ......+++ ..... . ...
T Consensus 130 ~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~----------~~~v~~~~~-------~~~~~-------~-~~~---- 179 (343)
T 2xzm_R 130 NRQILSAGAEREIKLWNILG-ECKFSSAEKENH----------SDWVSCVRY-------SPIMK-------S-ANK---- 179 (343)
T ss_dssp TTEEEEEETTSCEEEEESSS-CEEEECCTTTSC----------SSCEEEEEE-------CCCCC-------S-CSC----
T ss_pred CCEEEEEcCCCEEEEEeccC-CceeeeecccCC----------Cceeeeeee-------ccccc-------c-ccc----
Confidence 566665 466899999873 333322210000 000122232 22110 0 000
Q ss_pred CCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 004255 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (765)
Q Consensus 281 ~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~ 360 (765)
+.| ....++.++.||.|+||| ...+
T Consensus 180 ---------------------------------------~~~---------------~~~~l~s~~~d~~i~iwd-~~~~ 204 (343)
T 2xzm_R 180 ---------------------------------------VQP---------------FAPYFASVGWDGRLKVWN-TNFQ 204 (343)
T ss_dssp ---------------------------------------CCS---------------SCCEEEEEETTSEEEEEE-TTTE
T ss_pred ---------------------------------------cCC---------------CCCEEEEEcCCCEEEEEc-CCCc
Confidence 000 000123567899999999 4567
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 004255 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (765)
Q Consensus 361 ~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS 440 (765)
....+.+|..+|.+++|+|+|++|||++.|| .|+|||+... + .....+..+ ..|.+++|+
T Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg-~v~iwd~~~~------~----------~~~~~~~~~---~~v~~v~~s 264 (343)
T 2xzm_R 205 IRYTFKAHESNVNHLSISPNGKYIATGGKDK-KLLIWDILNL------T----------YPQREFDAG---STINQIAFN 264 (343)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTC-EEEEEESSCC------S----------SCSEEEECS---SCEEEEEEC
T ss_pred eeEEEcCccccceEEEECCCCCEEEEEcCCC-eEEEEECCCC------c----------ccceeecCC---CcEEEEEEC
Confidence 7888999999999999999999999999966 5999998431 1 122233222 359999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCC
Q 004255 441 HYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 441 pDg~~Las~S~dgTVhIwdl~~~ 463 (765)
||+++|+++ .|++|+||++...
T Consensus 265 p~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 265 PKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp SSSCEEEEE-ESSCEEEEESSSC
T ss_pred CCCCEEEEE-CCCCEEEEEeCCC
Confidence 999998765 5778999999764
No 35
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.90 E-value=6.9e-21 Score=198.82 Aligned_cols=275 Identities=13% Similarity=0.053 Sum_probs=187.3
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcce--Eeee--eccCCEEEEEEecCCCCCCCCCCcccc
Q 004255 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFN--ELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (765)
Q Consensus 54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~--ells--~~dg~V~~v~~lP~p~~~~~~d~f~~s 129 (765)
.+.+.|..+.|.. .++.|++|.++.++|||++...... ..+. .|.++|..+++.|+
T Consensus 49 ~h~~~v~~~~~~~-------~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------- 108 (337)
T 1gxr_A 49 NHGEVVCAVTISN-------PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD------------- 108 (337)
T ss_dssp CCSSCCCEEEECS-------SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT-------------
T ss_pred cCCCceEEEEEec-------CCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC-------------
Confidence 3556666666643 3678888886569999996543222 2222 67889999999974
Q ss_pred CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeC-CCCEEEEEecC--Ce
Q 004255 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRF-RSSVCMVRCSP--RI 204 (765)
Q Consensus 130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~--~v~tL~~-~s~V~sV~~s~--~~ 204 (765)
..+|++.+. +++|++||+++++ .+..+.. ...|.++++++ ++
T Consensus 109 ~~~l~~~~~---------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (337)
T 1gxr_A 109 GCTLIVGGE---------------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV 155 (337)
T ss_dssp SSEEEEEES---------------------------------SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSE
T ss_pred CCEEEEEcC---------------------------------CCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCE
Confidence 236655221 3689999999987 5555554 45899999987 57
Q ss_pred EEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCC
Q 004255 205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSG 281 (765)
Q Consensus 205 LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~ 281 (765)
|+++. ++.|++||+.+++.+..+..|..+ ...++++| ++|+.++.+..+ ..|+..+.
T Consensus 156 l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~dg~i-----~~~d~~~~-- 215 (337)
T 1gxr_A 156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-------------ASCIDISNDGTKLWTGGLDNTV-----RSWDLREG-- 215 (337)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTSSEEEEEETTSEE-----EEEETTTT--
T ss_pred EEEEeCCCcEEEEeCCCCceeeeeecccCc-------------eEEEEECCCCCEEEEEecCCcE-----EEEECCCC--
Confidence 77765 567999999999888887765542 35678877 688887655211 12221110
Q ss_pred CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 004255 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (765)
Q Consensus 282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~ 361 (765)
..+. .+. .........++++++ .++.+..+|.|++||+.+++.
T Consensus 216 ----------~~~~----------------~~~-------~~~~v~~~~~s~~~~----~l~~~~~~~~i~~~~~~~~~~ 258 (337)
T 1gxr_A 216 ----------RQLQ----------------QHD-------FTSQIFSLGYCPTGE----WLAVGMESSNVEVLHVNKPDK 258 (337)
T ss_dssp ----------EEEE----------------EEE-------CSSCEEEEEECTTSS----EEEEEETTSCEEEEETTSSCE
T ss_pred ----------ceEe----------------eec-------CCCceEEEEECCCCC----EEEEEcCCCcEEEEECCCCCe
Confidence 0000 000 000011112222222 234566789999999998875
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 004255 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (765)
Q Consensus 362 i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp 441 (765)
..+..|..+|.+++|+|+|++|++++.|| .|++||+.. + ..+..+. +...|.+++|+|
T Consensus 259 -~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~~~~~~-------~----------~~~~~~~---~~~~v~~~~~s~ 316 (337)
T 1gxr_A 259 -YQLHLHESCVLSLKFAYCGKWFVSTGKDN-LLNAWRTPY-------G----------ASIFQSK---ESSSVLSCDISV 316 (337)
T ss_dssp -EEECCCSSCEEEEEECTTSSEEEEEETTS-EEEEEETTT-------C----------CEEEEEE---CSSCEEEEEECT
T ss_pred -EEEcCCccceeEEEECCCCCEEEEecCCC-cEEEEECCC-------C----------eEEEEec---CCCcEEEEEECC
Confidence 46789999999999999999999999966 599999865 2 2443332 345799999999
Q ss_pred CCCEEEEEeCCCcEEEEeC
Q 004255 442 YSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 442 Dg~~Las~S~dgTVhIwdl 460 (765)
|+++|++++.||+|+||++
T Consensus 317 ~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 317 DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TSCEEEEEETTSCEEEEEE
T ss_pred CCCEEEEecCCCeEEEEEE
Confidence 9999999999999999997
No 36
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.2e-21 Score=205.21 Aligned_cols=247 Identities=12% Similarity=0.116 Sum_probs=168.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-cceEee-ee-ccCCEEEEEEecCCCCCCCCCCcc
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELV-SK-RDGPVSFLQMQPFPVKDDGCEGFR 127 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g-~~~ell-s~-~dg~V~~v~~lP~p~~~~~~d~f~ 127 (765)
..++++.|..+.|+. . +|++|..+| ++|||+.... .+..++ .. |.++|..|++.|+
T Consensus 10 ~~~h~~~v~~~~~s~--------~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~----------- 69 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQ--------G-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH----------- 69 (330)
T ss_dssp EECCSSCEEEEEEET--------T-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT-----------
T ss_pred eccCCCceeeeccCC--------C-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC-----------
Confidence 346788888888864 1 788888776 9999995421 334445 33 8899999999974
Q ss_pred ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC-------CCeEEEEEeCC-CCEEEEE
Q 004255 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ-------SHCYEHVLRFR-SSVCMVR 199 (765)
Q Consensus 128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlk-------tg~~v~tL~~~-s~V~sV~ 199 (765)
..+||+.+. +++|+|||+. +.+++..+..+ ..|.+|+
T Consensus 70 --~~~las~s~---------------------------------D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 114 (330)
T 2hes_X 70 --TSLLAAGSF---------------------------------DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114 (330)
T ss_dssp --SSEEEEEET---------------------------------TSCEEEEEC-------CCCEEEEEEC----CEEEEE
T ss_pred --CCEEEEEeC---------------------------------CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEE
Confidence 236765332 3689999985 34567777654 6899999
Q ss_pred ecC--CeEEEEe-CCeEEEEECCCC----ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccc
Q 004255 200 CSP--RIVAVGL-ATQIYCFDALTL----ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL 272 (765)
Q Consensus 200 ~s~--~~LaV~~-~~~I~iwD~~t~----~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~ 272 (765)
+++ ++||++. ++.|++||+.+. +++.++..|..+ ...++++| +.
T Consensus 115 ~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~-------------v~~v~~~p-------~~--------- 165 (330)
T 2hes_X 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD-------------VKHVIWHP-------SE--------- 165 (330)
T ss_dssp ECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC-------------EEEEEECS-------SS---------
T ss_pred ECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc-------------eEEEEECC-------CC---------
Confidence 987 6777765 568999999432 344445444431 12333332 10
Q ss_pred cCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEE
Q 004255 273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV 352 (765)
Q Consensus 273 s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~ 352 (765)
. .+++++.||+|+
T Consensus 166 ------------------~-------------------------------------------------~l~s~s~D~~i~ 178 (330)
T 2hes_X 166 ------------------A-------------------------------------------------LLASSSYDDTVR 178 (330)
T ss_dssp ------------------S-------------------------------------------------EEEEEETTSCEE
T ss_pred ------------------C-------------------------------------------------EEEEEcCCCeEE
Confidence 0 012345689999
Q ss_pred EEECCCC--cEEEEeccCCCCeEEEEECCC--CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255 353 VKDFVTR--AIISQFKAHTSPISALCFDPS--GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (765)
Q Consensus 353 IwDl~s~--~~i~~~~aH~~~IsaLaFSpd--G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG 428 (765)
|||+.++ +++..+.+|..+|.+++|+|+ +.+|+|++.|++ |+|||+..... .+ ......+..+ .+
T Consensus 179 iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~---~~------~~~~~~~~~~-~~ 247 (330)
T 2hes_X 179 IWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDE---DD------QQEWVCEAIL-PD 247 (330)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECT---TS------CEEEEEEEEC-CS
T ss_pred EEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCc---cc------cceeEEeeec-cc
Confidence 9998876 678899999999999999999 789999999765 99999853100 00 0000122223 23
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 429 ~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
.+...|++++|++++ +|++++.||+|+||++.
T Consensus 248 ~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 248 VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEV 279 (330)
T ss_dssp CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEE
T ss_pred ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcC
Confidence 345679999999765 89999999999999975
No 37
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.90 E-value=1.4e-20 Score=197.43 Aligned_cols=240 Identities=12% Similarity=0.113 Sum_probs=177.1
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
..++..|..+.|.. .++.|++|..+| ++|||+. .+++...+..|.+.|.++.+.|+. .
T Consensus 62 ~~h~~~v~~~~~~~-------~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~-------------~ 120 (312)
T 4ery_A 62 SGHKLGISDVAWSS-------DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQS-------------N 120 (312)
T ss_dssp CCCSSCEEEEEECT-------TSSEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECSSS-------------S
T ss_pred ccCCCceEEEEEcC-------CCCEEEEECCCCEEEEEECC-CCcEEEEEcCCCCCEEEEEEcCCC-------------C
Confidence 45667777777754 356788888776 9999995 567778888999999999998742 3
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEE
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG 208 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~ 208 (765)
+|++.+. +++|++||+++++.+..+..+ .+|.++.+++ ++|+++
T Consensus 121 ~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 121 LIVSGSF---------------------------------DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp EEEEEET---------------------------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEeC---------------------------------CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 6654221 368999999999999999865 6899999987 567765
Q ss_pred e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcC
Q 004255 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (765)
Q Consensus 209 ~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~s 287 (765)
. ++.|++||+.+++.+..+.....+ ....++++| +.
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~------------~~~~~~~~~-------~~------------------------ 204 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNP------------PVSFVKFSP-------NG------------------------ 204 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCC------------CEEEEEECT-------TS------------------------
T ss_pred eCCCcEEEEECCCCceeeEEeccCCC------------ceEEEEECC-------CC------------------------
Confidence 5 568999999999877766432221 012233322 11
Q ss_pred CCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 004255 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (765)
Q Consensus 288 p~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a 367 (765)
. .++.+..||.|+|||+.+++.+..+.+
T Consensus 205 ---~-------------------------------------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~ 232 (312)
T 4ery_A 205 ---K-------------------------------------------------YILAATLDNTLKLWDYSKGKCLKTYTG 232 (312)
T ss_dssp ---S-------------------------------------------------EEEEEETTTEEEEEETTTTEEEEEECS
T ss_pred ---C-------------------------------------------------EEEEEcCCCeEEEEECCCCcEEEEEEe
Confidence 0 011234688999999999999999999
Q ss_pred CCCCeE---EEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 004255 368 HTSPIS---ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ 444 (765)
Q Consensus 368 H~~~Is---aLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~ 444 (765)
|...+. .....++|.+|++++.||. |+|||+.. + ..+.++. |+ ...|.+++|+|+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~-i~vwd~~~-------~----------~~~~~~~-~h-~~~v~~~~~~p~~~ 292 (312)
T 4ery_A 233 HKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQT-------K----------EIVQKLQ-GH-TDVVISTACHPTEN 292 (312)
T ss_dssp SCCSSSCCCEEEECSSSCEEEECCTTSC-EEEEETTT-------C----------CEEEEEC-CC-SSCEEEEEECSSSS
T ss_pred cCCceEEEEEEEEeCCCcEEEEECCCCE-EEEEECCC-------c----------hhhhhhh-cc-CCcEEEEeecCcCC
Confidence 977543 3334478999999999775 99999965 2 3555664 43 45799999999999
Q ss_pred EEEEEe--CCCcEEEEeCC
Q 004255 445 WIAIVS--SKGTCHVFVLS 461 (765)
Q Consensus 445 ~Las~S--~dgTVhIwdl~ 461 (765)
+|++++ .|++|+||+.+
T Consensus 293 ~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 293 IIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEEECTTTCCEEEEECC
T ss_pred ceEEEEccCCccEEEecCC
Confidence 999997 69999999864
No 38
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.7e-21 Score=206.69 Aligned_cols=244 Identities=11% Similarity=0.081 Sum_probs=163.1
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC------CcceEeeeeccCCEEEEEEecCCCCCCCCCCcc
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA------SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~------g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~ 127 (765)
+++.|..+.|.. .+++|++|..++ ++|||++.. .++...+..|.++|..|++.|+.
T Consensus 57 h~~~v~~v~~sp-------~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g---------- 119 (330)
T 2hes_X 57 HKKAIRSVAWRP-------HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG---------- 119 (330)
T ss_dssp CCSCEEEEEECT-------TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS----------
T ss_pred ccCCEEEEEECC-------CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC----------
Confidence 777888888865 256888888776 999998531 23456778899999999999752
Q ss_pred ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC----CeEEEEEeCC-CCEEEEEecC
Q 004255 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS----HCYEHVLRFR-SSVCMVRCSP 202 (765)
Q Consensus 128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlkt----g~~v~tL~~~-s~V~sV~~s~ 202 (765)
.+||..+. +++|++||+.. .+++..+..+ ..|.+|+++|
T Consensus 120 ---~~las~s~---------------------------------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p 163 (330)
T 2hes_X 120 ---YYLATCSR---------------------------------DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP 163 (330)
T ss_dssp ---CEEEEEET---------------------------------TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred ---CEEEEEeC---------------------------------CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence 36665321 36899999943 3567778754 6899999987
Q ss_pred --CeEEEEe-CCeEEEEECCCC--ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCC
Q 004255 203 --RIVAVGL-ATQIYCFDALTL--ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNL 277 (765)
Q Consensus 203 --~~LaV~~-~~~I~iwD~~t~--~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~l 277 (765)
++|+++. ++.|++||+.+. +++.++.+|..+ ...++|+| +..
T Consensus 164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~-------------v~~~~~~~-------~~~------------- 210 (330)
T 2hes_X 164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT-------------VWSSDFDK-------TEG------------- 210 (330)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------EEEEEECC-------SSS-------------
T ss_pred CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCc-------------EEEEEecC-------CCC-------------
Confidence 5777765 568999998766 455666555542 12233322 100
Q ss_pred CCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC
Q 004255 278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV 357 (765)
Q Consensus 278 t~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~ 357 (765)
+ ..+++++.||+|+|||+.
T Consensus 211 -------------~------------------------------------------------~~l~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 211 -------------V------------------------------------------------FRLCSGSDDSTVRVWKYM 229 (330)
T ss_dssp -------------S------------------------------------------------CEEEEEETTSCEEEEEEE
T ss_pred -------------e------------------------------------------------eEEEEEeCCCeEEEEEec
Confidence 0 001244578999999987
Q ss_pred CC--------cEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255 358 TR--------AIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (765)
Q Consensus 358 s~--------~~i~~~~a-H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG 428 (765)
++ ..+..+.. |..+|.+++|++++ +||+++.||+ |+|||+.. +. ...+.....+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~-------~~--------~~~~~~~~~~ 292 (330)
T 2hes_X 230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVD-------GE--------WKVFAKRALC 292 (330)
T ss_dssp EECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEET-------TE--------EEEEEEESCT
T ss_pred CCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCC-------Cc--------eEEEeccccc
Confidence 64 45556665 99999999999776 8999999775 99999853 20 0122233234
Q ss_pred cccccEEEEEEcc--CCCEEEEEeCCCcEEEEeCCC
Q 004255 429 ITSATIQDICFSH--YSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 429 ~~~a~I~slaFSp--Dg~~Las~S~dgTVhIwdl~~ 462 (765)
+....|.+++|+| |+++||+++.||+|+||+++.
T Consensus 293 h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 293 HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 4333799999999 799999999999999999864
No 39
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.89 E-value=1.9e-20 Score=194.62 Aligned_cols=270 Identities=14% Similarity=0.132 Sum_probs=183.0
Q ss_pred eEEEEEecCcEEEEEccCCCcceEeee--eccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 76 QVLLLGYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 76 ~vL~~G~~~G~qVWdv~~~g~~~ells--~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
++|++|.++.++|||++ ++++.+++. .|.+.|.+|++.|+ ..+||+.+
T Consensus 37 ~~lAvg~D~tV~iWd~~-tg~~~~~~~~~~~~~~V~~v~~~~~-------------~~~l~sgs---------------- 86 (318)
T 4ggc_A 37 NVLAVALDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIKE-------------GNYLAVGT---------------- 86 (318)
T ss_dssp SEEEEEETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECTT-------------SSEEEEEE----------------
T ss_pred CEEEEEeCCEEEEEECC-CCCEEEEEEecCCCCeEEEEEECCC-------------CCEEEEEE----------------
Confidence 48999998889999995 677888776 45678999999974 23666522
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEEEeC-CeEEEEECCCCc-eeEEEEec
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGLA-TQIYCFDALTLE-NKFSVLTY 230 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV~~~-~~I~iwD~~t~~-~l~tl~t~ 230 (765)
.+++|++||++++++++++..+ ..+.++..++++|+++.. +.+++|+..+.. .+.++..|
T Consensus 87 -----------------~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (318)
T 4ggc_A 87 -----------------SSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH 149 (318)
T ss_dssp -----------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred -----------------CCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCc
Confidence 1369999999999999999876 578889999999988765 469999987754 34455555
Q ss_pred CCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcc
Q 004255 231 PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (765)
Q Consensus 231 p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G 308 (765)
... ...+++.+ ++|++++.+..+ ..|+..+....... .
T Consensus 150 ~~~-------------~~~~~~~~~~~~l~s~~~d~~i-----~iwd~~~~~~~~~~--------~-------------- 189 (318)
T 4ggc_A 150 SQE-------------VCGLRWAPDGRHLASGGNDNLV-----NVWPSAPGEGGWVP--------L-------------- 189 (318)
T ss_dssp SSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEESSCBTTBSCC--------S--------------
T ss_pred cCc-------------eEEEEEcCCCCEEEEEecCcce-----eEEECCCCcccccc--------e--------------
Confidence 542 23455655 778887665311 12332221000000 0
Q ss_pred cceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE
Q 004255 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS 388 (765)
Q Consensus 309 ~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS 388 (765)
.....+ .+........+... .....+.+..+++|+|||.......... .|...+..++|+|++..+++++
T Consensus 190 --~~~~~~------~~~v~~~~~~~~~~-~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s 259 (318)
T 4ggc_A 190 --QTFTQH------QGAVKAVAWCPWQS-NVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGH 259 (318)
T ss_dssp --EEECCC------CSCEEEEEECTTST-TEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEE
T ss_pred --eeeccc------CCceEEEEecCCCC-cEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEE
Confidence 000000 00000000111100 1112235678899999999988776554 5667899999999999998876
Q ss_pred --cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 389 --VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 389 --~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
.|+ .|+|||+.. + .++.+|. |+ ...|++|+|||||++||++|.||+|+|||+..
T Consensus 260 g~~d~-~i~iwd~~~-------~----------~~~~~l~-gH-~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 260 GFAQN-QLVIWKYPT-------M----------AKVAELK-GH-TSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp CTTTC-CEEEEETTT-------C----------CEEEEEC-CC-SSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EcCCC-EEEEEECCC-------C----------cEEEEEc-CC-CCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 444 599999965 3 4777775 54 46799999999999999999999999999965
No 40
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.89 E-value=6.2e-21 Score=205.16 Aligned_cols=250 Identities=14% Similarity=0.117 Sum_probs=172.1
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-cceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g-~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
+++++.|..+.|.. .++.|++|..++ ++|||++... ++...+..|.++|..|++.|+ .
T Consensus 58 ~~h~~~v~~~~~sp-------~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~-------------~ 117 (345)
T 3fm0_A 58 EGHQRTVRKVAWSP-------CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS-------------G 117 (345)
T ss_dssp SSCSSCEEEEEECT-------TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT-------------S
T ss_pred cccCCcEEEEEECC-------CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC-------------C
Confidence 56788888888865 356788888765 9999995422 345678889999999999975 2
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe---EEEEEeC-CCCEEEEEecC--Ce
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC---YEHVLRF-RSSVCMVRCSP--RI 204 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~---~v~tL~~-~s~V~sV~~s~--~~ 204 (765)
.+|++.+. +++|++||+.+++ ++..+.. ...|.++++++ ++
T Consensus 118 ~~l~s~s~---------------------------------D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 118 NLLATCSR---------------------------------DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp SEEEEEET---------------------------------TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred CEEEEEEC---------------------------------CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence 36665322 3689999998764 4556654 46899999987 57
Q ss_pred EEEEe-CCeEEEEECCCCc--eeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCC
Q 004255 205 VAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTP 279 (765)
Q Consensus 205 LaV~~-~~~I~iwD~~t~~--~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~ 279 (765)
|+++. ++.|++||+.+.+ +..++..|..+ ...++|+| ++||+++.
T Consensus 165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~-------------v~~l~~sp~g~~l~s~s~----------------- 214 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDDWVCCATLEGHEST-------------VWSLAFDPSGQRLASCSD----------------- 214 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------EEEEEECTTSSEEEEEET-----------------
T ss_pred EEEEeCCCcEEEEEecCCCEEEEEEecCCCCc-------------eEEEEECCCCCEEEEEeC-----------------
Confidence 77765 5679999988765 33455555542 34566666 55555544
Q ss_pred CCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC--
Q 004255 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-- 357 (765)
Q Consensus 280 ~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~-- 357 (765)
||+|+|||..
T Consensus 215 --------------------------------------------------------------------D~~v~iW~~~~~ 226 (345)
T 3fm0_A 215 --------------------------------------------------------------------DRTVRIWRQYLP 226 (345)
T ss_dssp --------------------------------------------------------------------TSCEEEEEEECT
T ss_pred --------------------------------------------------------------------CCeEEEeccccC
Confidence 3444444421
Q ss_pred -------------CCcEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 358 -------------TRAIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 358 -------------s~~~i~~~~a-H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
..+++..+.+ |...|.+++|+|++.+||+++.|+. |+||++.+... .. ........
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~~---~~------~~~~~~~~ 296 (345)
T 3fm0_A 227 GNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNSD---PQ------QPTFSLTA 296 (345)
T ss_dssp TCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTSC---TT------SCCEEEEE
T ss_pred CCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCCC---cc------eeeEEEEe
Confidence 1134555655 8999999999999999999999765 99999854210 00 00011122
Q ss_pred EEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCC
Q 004255 424 KLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~g 464 (765)
.+..+ +...|.+|+|+|++ .+||++|.||+|+||++....
T Consensus 297 ~~~~~-h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 297 HLHQA-HSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EETTS-SSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred eeccc-ccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 23334 34579999999998 599999999999999997643
No 41
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.89 E-value=4.4e-21 Score=217.67 Aligned_cols=315 Identities=17% Similarity=0.161 Sum_probs=204.4
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEE
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLL 133 (765)
+...|..+.|.. +++.|++|..+| ++|||. .++..+.+..|.++|..+++.|+ ..+|
T Consensus 220 ~~~~v~~~~~s~-------dg~~l~~~~~d~~i~~w~~--~~~~~~~~~~~~~~v~~v~~~~d-------------~~~l 277 (577)
T 2ymu_A 220 HSSSVRGVAFSP-------DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVNGVAFRPD-------------GQTI 277 (577)
T ss_dssp CSSCEEEEEECT-------TSSCEEEEETTSCEEEECT--TSCEEEEECCCSSCEEEEEECTT-------------SSEE
T ss_pred CCCCEEEEEECC-------CCCEEEEEeCCCEEEEEeC--CCCEEEEEecCCCCEEEEEEcCC-------------CCEE
Confidence 344455555532 355677777766 999997 35677888899999999999874 2356
Q ss_pred EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEe-
Q 004255 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL- 209 (765)
Q Consensus 134 avv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~- 209 (765)
++.+. +++|++||. +++.+..+..+ ..|+++++++ ++|+++.
T Consensus 278 ~~~~~---------------------------------d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~ 323 (577)
T 2ymu_A 278 ASASD---------------------------------DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 323 (577)
T ss_dssp EEEET---------------------------------TSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEeC---------------------------------CCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeC
Confidence 54321 358999996 56778888754 6899999987 5777665
Q ss_pred CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCce--ecCC-ccc--cCCCCCCCCC
Q 004255 210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLL--LSNS-GRL--SPQNLTPSGV 282 (765)
Q Consensus 210 ~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~--~~~~-G~~--s~~~lt~~~~ 282 (765)
++.|++||+.+. .+..+..|..+ ...++++| ++||.++.+.. ++.. +.. ..........
T Consensus 324 d~~i~~w~~~~~-~~~~~~~~~~~-------------v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~ 389 (577)
T 2ymu_A 324 DKTVKLWNRNGQ-HLQTLTGHSSS-------------VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR 389 (577)
T ss_dssp TSCEEEEETTSC-EEEEECCCSSC-------------EEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEE
T ss_pred CCeEEEEeCCCC-eeEEEeCCCCC-------------EEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeE
Confidence 557999997654 45556555442 34678888 78988876532 2211 111 0000111222
Q ss_pred CCCcCCCCCcceeeehhhhh---hhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 004255 283 SPSTSPGGSSLVARYAMEHS---KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (765)
Q Consensus 283 s~s~sp~~gslva~~a~d~~---k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~ 359 (765)
...++|++..++.- ..+.. ++......+++.++. .....+.++++.+. ++.+..||.|+|||+ ++
T Consensus 390 ~~~~s~dg~~l~~~-~~d~~v~~~~~~~~~~~~~~~~~------~~v~~~~~s~d~~~----l~~~~~d~~v~~w~~-~~ 457 (577)
T 2ymu_A 390 GVAFSPDGQTIASA-SDDKTVKLWNRNGQLLQTLTGHS------SSVWGVAFSPDDQT----IASASDDKTVKLWNR-NG 457 (577)
T ss_dssp EEEECTTSSCEEEE-ETTSEEEEECTTCCEEEEEECCS------SCEEEEEECTTSSE----EEEEETTSEEEEEET-TS
T ss_pred EEEECCCCCEEEEE-eCCCEEEEEeCCCCEEEEecCCC------CCeEEEEECCCCCE----EEEEcCCCEEEEEEC-CC
Confidence 34455655444321 11111 011111112222221 11122334444332 456778999999996 56
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 004255 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (765)
Q Consensus 360 ~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaF 439 (765)
+.+..+.+|..+|.+++|+|||++||+++.|+ .|+|||.. | ..+..+. |+ ...|.+|+|
T Consensus 458 ~~~~~~~~~~~~v~~~~~spd~~~las~~~d~-~i~iw~~~--------~----------~~~~~~~-~h-~~~v~~l~~ 516 (577)
T 2ymu_A 458 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDK-TVKLWNRN--------G----------QLLQTLT-GH-SSSVRGVAF 516 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSCEEEEEETTS-EEEEEETT--------S----------CEEEEEE-CC-SSCEEEEEE
T ss_pred CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-EEEEEcCC--------C----------CEEEEEe-CC-CCCEEEEEE
Confidence 78889999999999999999999999999965 59999962 3 3566664 43 457999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255 440 SHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 440 SpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
||||++||+++.||+|+|||+. ......+.+|.
T Consensus 517 s~dg~~l~s~~~dg~v~lwd~~-~~~~~~~~~h~ 549 (577)
T 2ymu_A 517 SPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHS 549 (577)
T ss_dssp CTTSSCEEEEETTSEEEEECTT-SCEEEEEECCS
T ss_pred cCCCCEEEEEECcCEEEEEeCC-CCEEEEEcCCC
Confidence 9999999999999999999963 22234456675
No 42
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.89 E-value=2.1e-20 Score=196.10 Aligned_cols=264 Identities=12% Similarity=0.103 Sum_probs=176.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC----cceEeeeeccCCEEEEEEecCCCCCCCCCCc
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS----NFNELVSKRDGPVSFLQMQPFPVKDDGCEGF 126 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g----~~~ells~~dg~V~~v~~lP~p~~~~~~d~f 126 (765)
..+|++.|..+.|.. + .+++|++|..+| ++|||+.... .....+..|.++|..+.+.|+
T Consensus 34 L~GH~~~V~~v~~sp----~--~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d---------- 97 (340)
T 4aow_A 34 LKGHNGWVTQIATTP----Q--FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD---------- 97 (340)
T ss_dssp ECCCSSCEEEEEECT----T--CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT----------
T ss_pred ECCccCCEEEEEEeC----C--CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC----------
Confidence 467999999999964 1 256888888776 9999996432 234567788999999999875
Q ss_pred cccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--C
Q 004255 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--R 203 (765)
Q Consensus 127 ~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~ 203 (765)
..+|++.+. ++.|++|+...+......... ..+..+.+++ +
T Consensus 98 ---g~~l~s~~~---------------------------------d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (340)
T 4aow_A 98 ---GQFALSGSW---------------------------------DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141 (340)
T ss_dssp ---SSEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred ---CCEEEEEcc---------------------------------cccceEEeecccceeeeecCCCCceeEEEEeecCc
Confidence 236655221 368999999999988887765 4666777665 5
Q ss_pred eEEEEe-CCeEEEEECCCCceeEEEE-ecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCC
Q 004255 204 IVAVGL-ATQIYCFDALTLENKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG 281 (765)
Q Consensus 204 ~LaV~~-~~~I~iwD~~t~~~l~tl~-t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~ 281 (765)
+|+++. ++.+++||+.......... .|... ... +++.....
T Consensus 142 ~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~-------------v~~-------~~~~~~~~----------------- 184 (340)
T 4aow_A 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW-------------VSC-------VRFSPNSS----------------- 184 (340)
T ss_dssp CEEEEETTSCEEEECTTSCEEEEECSSSCSSC-------------EEE-------EEECSCSS-----------------
T ss_pred cceeecCCCeEEEEEeCCCceEEEEeccccCc-------------ccc-------eEEccCCC-----------------
Confidence 666654 5679999987654321111 11110 011 12211100
Q ss_pred CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 004255 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (765)
Q Consensus 282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~ 361 (765)
.. ..+.+..|+.|++||+.+++.
T Consensus 185 ---------~~------------------------------------------------~~~s~~~d~~i~i~d~~~~~~ 207 (340)
T 4aow_A 185 ---------NP------------------------------------------------IIVSCGWDKLVKVWNLANCKL 207 (340)
T ss_dssp ---------SC------------------------------------------------EEEEEETTSCEEEEETTTTEE
T ss_pred ---------Cc------------------------------------------------EEEEEcCCCEEEEEECCCCce
Confidence 00 012345789999999999999
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc----CC----------CCC---Ccc-----ccCC-c
Q 004255 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR----SG----------SGN---HKY-----DWNS-S 418 (765)
Q Consensus 362 i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~----~~----------sG~---~~~-----~~~~-s 418 (765)
+..+.+|..+|.+|+|+|+|++||+|+.|| .|+|||+...... .. .+. ... .|+. .
T Consensus 208 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg-~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~ 286 (340)
T 4aow_A 208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDG-QAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEG 286 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTC-EEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTT
T ss_pred eeEecCCCCcEEEEEECCCCCEEEEEeCCC-eEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCC
Confidence 999999999999999999999999999966 5999998653110 00 000 000 0000 0
Q ss_pred ceEEEEEec-------ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 419 HVHLYKLHR-------GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 419 ~~~l~~l~r-------G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
...+.++.. ..+...|++|+|+|||++|++++.||+|+|||+.+
T Consensus 287 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 287 KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp TEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred CeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 011222211 01234699999999999999999999999999976
No 43
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.7e-20 Score=194.22 Aligned_cols=275 Identities=13% Similarity=0.070 Sum_probs=190.7
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
..++++.|..+.| . + ++.|++|..+| ++|||++ .+.+...+..|.++|..+++.|+ .
T Consensus 14 l~~h~~~v~~~~~-~----~---~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~-------------~ 71 (313)
T 3odt_A 14 LKGHDQDVRDVVA-V----D---DSKVASVSRDGTVRLWSKD-DQWLGTVVYTGQGFLNSVCYDSE-------------K 71 (313)
T ss_dssp ECCCSSCEEEEEE-E----E---TTEEEEEETTSEEEEEEES-SSEEEEEEEECSSCEEEEEEETT-------------T
T ss_pred hhCCCCCcEEEEe-c----C---CCEEEEEEcCCcEEEEECC-CCEEEEEeecCCccEEEEEECCC-------------C
Confidence 4568889999988 3 1 34688888777 9999994 57778888899999999999974 2
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC---eEEEEEeC-CCCEEEEEecCCeEE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH---CYEHVLRF-RSSVCMVRCSPRIVA 206 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg---~~v~tL~~-~s~V~sV~~s~~~La 206 (765)
.+|++.+. ++.|++|++... +.+..+.. ...|.++.+++++|+
T Consensus 72 ~~l~~~~~---------------------------------dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 118 (313)
T 3odt_A 72 ELLLFGGK---------------------------------DTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVI 118 (313)
T ss_dssp TEEEEEET---------------------------------TSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEE
T ss_pred CEEEEecC---------------------------------CCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEE
Confidence 36665321 257999998654 56677764 468999999998888
Q ss_pred EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCCccccCCCCCCCCC
Q 004255 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (765)
Q Consensus 207 V~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s~~~lt~~~~ 282 (765)
++. ++.|++|| +.+....+..+..+ ...+++.+ ++|+.++.+..+ ..|+....
T Consensus 119 ~~~~d~~i~~~d--~~~~~~~~~~~~~~-------------v~~~~~~~~~~~~l~~~~~d~~i-----~i~d~~~~--- 175 (313)
T 3odt_A 119 SGSWDKTAKVWK--EGSLVYNLQAHNAS-------------VWDAKVVSFSENKFLTASADKTI-----KLWQNDKV--- 175 (313)
T ss_dssp EEETTSEEEEEE--TTEEEEEEECCSSC-------------EEEEEEEETTTTEEEEEETTSCE-----EEEETTEE---
T ss_pred EEeCCCCEEEEc--CCcEEEecccCCCc-------------eeEEEEccCCCCEEEEEECCCCE-----EEEecCce---
Confidence 766 55799999 66677777766542 23344433 677777654211 11220000
Q ss_pred CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE
Q 004255 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (765)
Q Consensus 283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i 362 (765)
+ +.+... .........++++.. ++.+..+|.|+|||+.+++.+
T Consensus 176 -----------~----------------~~~~~~-----~~~~i~~~~~~~~~~-----~~~~~~dg~i~i~d~~~~~~~ 218 (313)
T 3odt_A 176 -----------I----------------KTFSGI-----HNDVVRHLAVVDDGH-----FISCSNDGLIKLVDMHTGDVL 218 (313)
T ss_dssp -----------E----------------EEECSS-----CSSCEEEEEEEETTE-----EEEEETTSEEEEEETTTCCEE
T ss_pred -----------E----------------EEEecc-----CcccEEEEEEcCCCe-----EEEccCCCeEEEEECCchhhh
Confidence 0 011000 000001111111111 346778999999999999999
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (765)
Q Consensus 363 ~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD 442 (765)
..+.+|..+|.+++|+|+| .|++++.|| .|+|||+.. + ..+..+. + +...|++++|+||
T Consensus 219 ~~~~~~~~~i~~~~~~~~~-~l~~~~~dg-~v~iwd~~~-------~----------~~~~~~~-~-~~~~i~~~~~~~~ 277 (313)
T 3odt_A 219 RTYEGHESFVYCIKLLPNG-DIVSCGEDR-TVRIWSKEN-------G----------SLKQVIT-L-PAISIWSVDCMSN 277 (313)
T ss_dssp EEEECCSSCEEEEEECTTS-CEEEEETTS-EEEEECTTT-------C----------CEEEEEE-C-SSSCEEEEEECTT
T ss_pred hhhhcCCceEEEEEEecCC-CEEEEecCC-EEEEEECCC-------C----------ceeEEEe-c-cCceEEEEEEccC
Confidence 9999999999999999999 588999866 599999965 3 3555554 2 2347999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCC
Q 004255 443 SQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 443 g~~Las~S~dgTVhIwdl~~~ 463 (765)
++ +++++.||+|+||++...
T Consensus 278 ~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 278 GD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp SC-EEEEETTSCEEEEESCGG
T ss_pred CC-EEEEeCCCcEEEEeCCCC
Confidence 99 557999999999999764
No 44
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.89 E-value=2.3e-20 Score=200.21 Aligned_cols=265 Identities=16% Similarity=0.158 Sum_probs=180.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeee-------------eccCCEEEEEEecCC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVS-------------KRDGPVSFLQMQPFP 117 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells-------------~~dg~V~~v~~lP~p 117 (765)
...+++.|..+.|..- .++.|++|..+| ++|||++. ++....+. .|.++|..+++.|+
T Consensus 39 ~~~h~~~v~~~~~s~~------~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 110 (408)
T 4a11_B 39 ERIHGGGINTLDIEPV------EGRYMLSGGSDGVIVLYDLEN-SSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH- 110 (408)
T ss_dssp CCCCSSCEEEEEECTT------TCCEEEEEETTSCEEEEECCC-CSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-
T ss_pred eeccCCcEEEEEEecC------CCCEEEEEcCCCeEEEEECCC-CcccceEeccccccccccccccCCCcEEEEEEccC-
Confidence 4458899999998541 256788888776 99999965 33333332 48899999999973
Q ss_pred CCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEE
Q 004255 118 VKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCM 197 (765)
Q Consensus 118 ~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~s 197 (765)
...+|++.+. +++|++||+.+++.+..+.+...+..
T Consensus 111 -----------~~~~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~ 146 (408)
T 4a11_B 111 -----------DTGMFTSSSF---------------------------------DKTLKVWDTNTLQTADVFNFEETVYS 146 (408)
T ss_dssp -----------CTTCEEEEET---------------------------------TSEEEEEETTTTEEEEEEECSSCEEE
T ss_pred -----------CCcEEEEEeC---------------------------------CCeEEEeeCCCCccceeccCCCceee
Confidence 1225554221 36899999999999999999999999
Q ss_pred EEecC-----CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCcc
Q 004255 198 VRCSP-----RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGR 271 (765)
Q Consensus 198 V~~s~-----~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~ 271 (765)
+.+++ .+|+++. ++.|++||+.+++.+..+..|..+ ...++++| +.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------------v~~~~~~~-------~~-------- 198 (408)
T 4a11_B 147 HHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE-------------ILAVSWSP-------RY-------- 198 (408)
T ss_dssp EEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSC-------------EEEEEECS-------SC--------
T ss_pred eEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCc-------------EEEEEECC-------CC--------
Confidence 99876 2666655 567999999999888887765542 23344433 10
Q ss_pred ccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeE
Q 004255 272 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351 (765)
Q Consensus 272 ~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V 351 (765)
..+ ++.+..||.|
T Consensus 199 -------------------~~l------------------------------------------------l~~~~~dg~i 211 (408)
T 4a11_B 199 -------------------DYI------------------------------------------------LATASADSRV 211 (408)
T ss_dssp -------------------TTE------------------------------------------------EEEEETTSCE
T ss_pred -------------------CcE------------------------------------------------EEEEcCCCcE
Confidence 000 1123457788
Q ss_pred EEEECCCCc-EEEEe---------------ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC-CCCC----
Q 004255 352 VVKDFVTRA-IISQF---------------KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS-GSGN---- 410 (765)
Q Consensus 352 ~IwDl~s~~-~i~~~---------------~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~-~sG~---- 410 (765)
+|||+.++. .+..+ .+|..+|.+++|+|+|++|++++.||. |+|||+....... ..+.
T Consensus 212 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~ 290 (408)
T 4a11_B 212 KLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR-MRLWNSSNGENTLVNYGKVCNN 290 (408)
T ss_dssp EEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCBCCCCCCCCCCC
T ss_pred EEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe-EEEEECCCCccceecccccccc
Confidence 888887654 33333 679999999999999999999999775 9999986521100 0000
Q ss_pred --C--cc--------------------ccC-CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 411 --H--KY--------------------DWN-SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 411 --~--~~--------------------~~~-~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
. .. .|+ .....+..+. + +...|.+++|+||+++|++++.||+|+||++.....
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 291 SKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK-G-HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp CSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC-C-CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred ccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec-c-CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 0 00 000 1113344443 3 345799999999999999999999999999987654
Q ss_pred C
Q 004255 466 D 466 (765)
Q Consensus 466 ~ 466 (765)
.
T Consensus 369 ~ 369 (408)
T 4a11_B 369 V 369 (408)
T ss_dssp -
T ss_pred c
Confidence 3
No 45
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.89 E-value=7.5e-21 Score=203.83 Aligned_cols=237 Identities=11% Similarity=0.198 Sum_probs=165.0
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
.++.+.|..+.|.. .+.+|++|..+| ++|||+. .+++...+..|.++|..+++.|+. .
T Consensus 73 ~~h~~~V~~~~~~~-------~~~~l~s~s~D~~v~lwd~~-~~~~~~~~~~h~~~v~~v~~sp~~-------------~ 131 (343)
T 2xzm_R 73 TGHNHFVSDLALSQ-------ENCFAISSSWDKTLRLWDLR-TGTTYKRFVGHQSEVYSVAFSPDN-------------R 131 (343)
T ss_dssp CCCSSCEEEEEECS-------STTEEEEEETTSEEEEEETT-SSCEEEEEECCCSCEEEEEECSST-------------T
T ss_pred ccCCCceEEEEECC-------CCCEEEEEcCCCcEEEEECC-CCcEEEEEcCCCCcEEEEEECCCC-------------C
Confidence 45667777777754 256788888776 9999995 567778888999999999999752 2
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe----CCCCEEEEEecCC----
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR----FRSSVCMVRCSPR---- 203 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~----~~s~V~sV~~s~~---- 203 (765)
+|++.+. +++|++||+... ....+. +...|.++++++.
T Consensus 132 ~l~s~~~---------------------------------d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~ 177 (343)
T 2xzm_R 132 QILSAGA---------------------------------EREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSA 177 (343)
T ss_dssp EEEEEET---------------------------------TSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred EEEEEcC---------------------------------CCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccc
Confidence 5654321 368999999844 333332 3458999999873
Q ss_pred --------eEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccc
Q 004255 204 --------IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRL 272 (765)
Q Consensus 204 --------~LaV~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~ 272 (765)
+|+++ .++.|++|| .+.+...++..|..+ ...++++| ++||
T Consensus 178 ~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~-------------v~~~~~s~~g~~l~-------------- 229 (343)
T 2xzm_R 178 NKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESN-------------VNHLSISPNGKYIA-------------- 229 (343)
T ss_dssp SCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSC-------------EEEEEECTTSSEEE--------------
T ss_pred cccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCcccc-------------ceEEEECCCCCEEE--------------
Confidence 46654 467899999 456666677666542 23344433 2222
Q ss_pred cCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEE
Q 004255 273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV 352 (765)
Q Consensus 273 s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~ 352 (765)
+++.||.|+
T Consensus 230 -----------------------------------------------------------------------sgs~dg~v~ 238 (343)
T 2xzm_R 230 -----------------------------------------------------------------------TGGKDKKLL 238 (343)
T ss_dssp -----------------------------------------------------------------------EEETTCEEE
T ss_pred -----------------------------------------------------------------------EEcCCCeEE
Confidence 345688999
Q ss_pred EEECCC-CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-----
Q 004255 353 VKDFVT-RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH----- 426 (765)
Q Consensus 353 IwDl~s-~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~----- 426 (765)
|||+.. ......+ .|...|.+++|+|++.+|++++. ++ |+|||+.+.. . ..+..+.
T Consensus 239 iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~d-~~-v~iw~~~~~~-----~----------~~~~~~~~~~~~ 300 (343)
T 2xzm_R 239 IWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGTD-QG-VKIFNLMTQS-----K----------APVCTIEAEPIT 300 (343)
T ss_dssp EEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEES-SC-EEEEESSSCC-----S----------CSEEECCCCSGG
T ss_pred EEECCCCcccceee-cCCCcEEEEEECCCCCEEEEECC-CC-EEEEEeCCCC-----C----------CceEEeecCcch
Confidence 999954 3344444 35567999999999999886654 55 9999986521 0 1112221
Q ss_pred -----cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 427 -----RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 427 -----rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
+| +...|.+++|+|||++|++++.||+|+||++.+
T Consensus 301 ~~~~~~~-~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 301 KAEGQKG-KNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp GBTTBCC-SCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred hhhhhcC-CCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 13 334699999999999999999999999999864
No 46
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.88 E-value=5.7e-21 Score=205.65 Aligned_cols=252 Identities=11% Similarity=0.058 Sum_probs=180.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc------ceEeeeeccCCEEEEEEecCCCCCCCCC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN------FNELVSKRDGPVSFLQMQPFPVKDDGCE 124 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~------~~ells~~dg~V~~v~~lP~p~~~~~~d 124 (765)
...+++.|..+.|+. +.|++|..+| ++|||++. ++ +...+..|.++|.++++.|+.
T Consensus 12 ~~~h~~~i~~~~~~~---------~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------- 74 (397)
T 1sq9_A 12 GKAHDADIFSVSACN---------SFTVSCSGDGYLKVWDNKL-LDNENPKDKSYSHFVHKSGLHHVDVLQAI------- 74 (397)
T ss_dssp SSCSSSCEEEEEECS---------SEEEEEETTSEEEEEESBC-CTTCCGGGGEEEEECCTTCEEEEEEEEEE-------
T ss_pred hhhhhcCeEEEEecC---------CeEEEEcCCCEEEEEECCC-cccccCCCcceEEecCCCcEEEEEEeccc-------
Confidence 467889999999954 4777777766 99999964 44 567777899999999999741
Q ss_pred CccccC---CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-----EEEEeCC----
Q 004255 125 GFRKLH---PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----EHVLRFR---- 192 (765)
Q Consensus 125 ~f~~sr---pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~-----v~tL~~~---- 192 (765)
.... .+|++.+. +++|++||+.+++. +..+..+
T Consensus 75 --~~~g~~~~~l~s~~~---------------------------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 119 (397)
T 1sq9_A 75 --ERDAFELCLVATTSF---------------------------------SGDLLFYRITREDETKKVIFEKLDLLDSDM 119 (397)
T ss_dssp --ETTTEEEEEEEEEET---------------------------------TSCEEEEEEEECTTTCCEEEEEECCSCTTG
T ss_pred --ccCCccccEEEEEcC---------------------------------CCCEEEEEccCCcccccccceeeccccccc
Confidence 0012 35654221 36899999999887 8888765
Q ss_pred --CCEEEEEec----C--Ce-EEEEe-CCeEEEEECCC------CceeE-----EEEe-------cCCcccCCCCccccc
Q 004255 193 --SSVCMVRCS----P--RI-VAVGL-ATQIYCFDALT------LENKF-----SVLT-------YPVPQLAGQGAVGIN 244 (765)
Q Consensus 193 --s~V~sV~~s----~--~~-LaV~~-~~~I~iwD~~t------~~~l~-----tl~t-------~p~p~~~~~~~~~~~ 244 (765)
..|.+++++ + ++ |+++. ++.|++||+.+ ++.+. ++.. +..
T Consensus 120 ~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 187 (397)
T 1sq9_A 120 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ------------ 187 (397)
T ss_dssp GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCC------------
T ss_pred CCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCC------------
Confidence 799999999 5 56 77664 56899999887 44333 2211 000
Q ss_pred cccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCC
Q 004255 245 VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (765)
Q Consensus 245 ~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~ 324 (765)
....++++
T Consensus 188 -~i~~~~~~----------------------------------------------------------------------- 195 (397)
T 1sq9_A 188 -FATSVDIS----------------------------------------------------------------------- 195 (397)
T ss_dssp -CCCEEEEC-----------------------------------------------------------------------
T ss_pred -CceEEEEC-----------------------------------------------------------------------
Confidence 00011111
Q ss_pred CCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc---C---CCCeEEEEECCCCCEEEEEEcC---CCEEE
Q 004255 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA---H---TSPISALCFDPSGTLLVTASVY---GNNIN 395 (765)
Q Consensus 325 s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a---H---~~~IsaLaFSpdG~lLATaS~d---Gt~Ir 395 (765)
+++ .++.+..+|.|+|||+.+++.+..+.. | ..+|.+++|+|+|++|++++.| | .|+
T Consensus 196 --------~~~-----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g-~i~ 261 (397)
T 1sq9_A 196 --------ERG-----LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG-CIT 261 (397)
T ss_dssp --------TTS-----EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEE-EEE
T ss_pred --------CCc-----eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCc-eEE
Confidence 100 123456789999999999999999999 9 9999999999999999999996 5 599
Q ss_pred EEeCCCCcccCCCCCCccccCCcceEEEEEeccc-----------ccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255 396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI-----------TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 396 VWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~-----------~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g 464 (765)
|||+.. + ..+..+.... +...|.+++|+||+++|++++.||+|+|||+....
T Consensus 262 i~d~~~-------~----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (397)
T 1sq9_A 262 LYETEF-------G----------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 324 (397)
T ss_dssp EEETTT-------C----------CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred EEECCC-------C----------cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 999964 2 3555554200 34579999999999999999999999999998754
Q ss_pred CCcccc
Q 004255 465 GDSGFQ 470 (765)
Q Consensus 465 g~~~~~ 470 (765)
....+.
T Consensus 325 ~~~~~~ 330 (397)
T 1sq9_A 325 RITTLN 330 (397)
T ss_dssp EEEEEE
T ss_pred eeEEEe
Confidence 333333
No 47
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.88 E-value=2.8e-20 Score=203.43 Aligned_cols=270 Identities=11% Similarity=0.050 Sum_probs=185.9
Q ss_pred CeEEEEEecCcEEEEEccCCCcceEeeee-ccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 75 KQVLLLGYQNGFQVLDVEDASNFNELVSK-RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 75 ~~vL~~G~~~G~qVWdv~~~g~~~ells~-~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
..+++.|.++.++|||++ .+++..++.. |.++|.++++.|+ ..+|++.+.
T Consensus 104 ~~l~~~~~d~~v~lw~~~-~~~~~~~~~~~~~~~v~~v~~s~~-------------~~~l~~~~~--------------- 154 (401)
T 4aez_A 104 LNVVAVALERNVYVWNAD-SGSVSALAETDESTYVASVKWSHD-------------GSFLSVGLG--------------- 154 (401)
T ss_dssp TSEEEEEETTEEEEEETT-TCCEEEEEECCTTCCEEEEEECTT-------------SSEEEEEET---------------
T ss_pred CCEEEEECCCeEEEeeCC-CCcEeEeeecCCCCCEEEEEECCC-------------CCEEEEECC---------------
Confidence 457777767779999995 5666666665 7889999999974 236665321
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecCCeEEEEe-CCeEEEEECCC-CceeEEEEec
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPRIVAVGL-ATQIYCFDALT-LENKFSVLTY 230 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~~~LaV~~-~~~I~iwD~~t-~~~l~tl~t~ 230 (765)
+++|++||+.+++.+.++.. ...|.++++++++|+++. ++.|++||+.+ .+....+..|
T Consensus 155 ------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 216 (401)
T 4aez_A 155 ------------------NGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH 216 (401)
T ss_dssp ------------------TSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred ------------------CCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence 25899999999999999975 469999999999888766 46799999984 5556666666
Q ss_pred CCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcc
Q 004255 231 PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (765)
Q Consensus 231 p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G 308 (765)
..+ ...++++| ++||+++.+..+ ..|+..+. ..+
T Consensus 217 ~~~-------------v~~~~~~~~~~~l~s~~~d~~v-----~iwd~~~~------------~~~-------------- 252 (401)
T 4aez_A 217 SSE-------------VCGLAWRSDGLQLASGGNDNVV-----QIWDARSS------------IPK-------------- 252 (401)
T ss_dssp SSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEETTCS------------SEE--------------
T ss_pred CCC-------------eeEEEEcCCCCEEEEEeCCCeE-----EEccCCCC------------Ccc--------------
Confidence 542 35678887 788888765311 12332211 000
Q ss_pred cceeecccccccCCCCCCCCccCCCccccccccccc--cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 004255 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGAD--MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT 386 (765)
Q Consensus 309 ~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~--~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLAT 386 (765)
.++..+. .....+.++++... .++. +..||.|++||+.+++.+..+. |..+|.+++|+|+|.+|++
T Consensus 253 --~~~~~~~------~~v~~~~~~p~~~~---ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 253 --FTKTNHN------AAVKAVAWCPWQSN---LLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp --EEECCCS------SCCCEEEECTTSTT---EEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEE
T ss_pred --EEecCCc------ceEEEEEECCCCCC---EEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEE
Confidence 0111110 11112222222211 1122 3479999999999999988886 5678999999999999999
Q ss_pred EE--cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255 387 AS--VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 387 aS--~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g 464 (765)
++ .+| .|+|||+.. + ....+..+. + +...|.+++|+|||++|++++.||+|+||++....
T Consensus 321 ~~g~~dg-~i~v~~~~~-------~--------~~~~~~~~~-~-h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 321 THGFPDN-NLSIWSYSS-------S--------GLTKQVDIP-A-HDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp EECTTTC-EEEEEEEET-------T--------EEEEEEEEE-C-CSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred EeecCCC-cEEEEecCC-------c--------cceeEEEec-C-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 65 545 699999854 2 012334443 3 34579999999999999999999999999998654
Q ss_pred C
Q 004255 465 G 465 (765)
Q Consensus 465 g 465 (765)
.
T Consensus 383 ~ 383 (401)
T 4aez_A 383 H 383 (401)
T ss_dssp -
T ss_pred c
Confidence 3
No 48
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.88 E-value=5.6e-21 Score=224.53 Aligned_cols=281 Identities=15% Similarity=0.181 Sum_probs=193.7
Q ss_pred hceeeeeccCCcceeeeccccccccceeccc--CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-
Q 004255 20 SSCLKTVSTNASTVASTVRSAGASVAASISN--ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS- 95 (765)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g- 95 (765)
...|.-+-+|..++...+..|...++..+.. ....|++.|..+.|.. + ...+|++|..+| ++|||+...+
T Consensus 344 ~~~~~~~~~G~~~~~~al~~a~~~~~~~l~~~~~l~~H~~~V~~v~~~~----~--~~~~l~s~s~D~~i~~W~~~~~~~ 417 (694)
T 3dm0_A 344 RTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPI----D--NADIIVSASRDKSIILWKLTKDDK 417 (694)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHCSSEEEEEEECCSSCEEEEECCT----T--CCSEEEEEETTSEEEEEECCCSTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhhhcccchhhhcccCCceeEEEEecC----C--CCCEEEEEeCCCcEEEEEccCCCc
Confidence 3334334456666655555554444433332 2567999999998854 1 246888888876 9999996432
Q ss_pred ---cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCC
Q 004255 96 ---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSP 172 (765)
Q Consensus 96 ---~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p 172 (765)
.....+..|.+.|.++.+.|+ ..+|++.+. +
T Consensus 418 ~~~~~~~~~~~h~~~v~~v~~s~~-------------g~~l~sgs~---------------------------------D 451 (694)
T 3dm0_A 418 AYGVAQRRLTGHSHFVEDVVLSSD-------------GQFALSGSW---------------------------------D 451 (694)
T ss_dssp CSCEEEEEEECCSSCEEEEEECTT-------------SSEEEEEET---------------------------------T
T ss_pred ccccccceecCCCCcEEEEEECCC-------------CCEEEEEeC---------------------------------C
Confidence 245678889999999999874 236654221 3
Q ss_pred CEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 004255 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (765)
++|+|||+.+++.++.+..| ..|.+|++++ ++|+++. ++.|++||+... +...+...... + .....
T Consensus 452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~----h-----~~~v~ 521 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTISEGGEG----H-----RDWVS 521 (694)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEEEECSSTTS----C-----SSCEE
T ss_pred CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-cceeeccCCCC----C-----CCcEE
Confidence 69999999999999999755 6899999987 5666654 668999997643 33333211000 0 00011
Q ss_pred eeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCC
Q 004255 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (765)
Q Consensus 249 ~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~ 328 (765)
.++++| +.. .
T Consensus 522 ~~~~~~-------~~~--------------------------~------------------------------------- 531 (694)
T 3dm0_A 522 CVRFSP-------NTL--------------------------Q------------------------------------- 531 (694)
T ss_dssp EEEECS-------CSS--------------------------S-------------------------------------
T ss_pred EEEEeC-------CCC--------------------------c-------------------------------------
Confidence 122211 100 0
Q ss_pred ccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 004255 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (765)
Q Consensus 329 ~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~s 408 (765)
..+++++.||+|+|||+.+++.+..+.+|..+|.+|+|+|+|++|+|++.||+ |+|||+..
T Consensus 532 -----------~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~------- 592 (694)
T 3dm0_A 532 -----------PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAE------- 592 (694)
T ss_dssp -----------CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTT-------
T ss_pred -----------ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCC-------
Confidence 01224567899999999999999999999999999999999999999999765 99999965
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 409 G~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
+ .+++.+.. ...|.+++|+||+.+|++++ ++.|+|||+.....
T Consensus 593 ~----------~~~~~~~~---~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 593 G----------KKLYSLEA---NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSI 635 (694)
T ss_dssp T----------EEEECCBC---SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEE
T ss_pred C----------ceEEEecC---CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCC
Confidence 3 45555532 34699999999999988876 55699999986433
No 49
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.88 E-value=9.4e-21 Score=204.37 Aligned_cols=283 Identities=13% Similarity=0.070 Sum_probs=188.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeee--eccCCEEEEEEecCCCCCCCCCCccc
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRK 128 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells--~~dg~V~~v~~lP~p~~~~~~d~f~~ 128 (765)
...+.+.|..+.|.. + ..++|++|..+| ++|||+. .++....+. .|.+.|..+++.|+
T Consensus 69 ~~~h~~~v~~~~~~~----~--~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~h~~~v~~~~~~~~------------ 129 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHP----T--HPTTVAVGSKGGDIILWDYD-VQNKTSFIQGMGPGDAITGMKFNQF------------ 129 (383)
T ss_dssp ECCCSSCEEEEEECS----S--CTTEEEEEEBTSCEEEEETT-STTCEEEECCCSTTCBEEEEEEETT------------
T ss_pred ccCCCCCEEEEEECC----C--CCCEEEEEcCCCeEEEEeCC-CcccceeeecCCcCCceeEEEeCCC------------
Confidence 456888999999976 1 126888888776 9999996 455656655 58899999999972
Q ss_pred cCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-C---CCEEEEEecC--
Q 004255 129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-R---SSVCMVRCSP-- 202 (765)
Q Consensus 129 srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~---s~V~sV~~s~-- 202 (765)
...+|++.+. +++|++||+++ +.+..+.. . ..|.++++++
T Consensus 130 ~~~~l~s~~~---------------------------------d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 175 (383)
T 3ei3_B 130 NTNQLFVSSI---------------------------------RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR 175 (383)
T ss_dssp EEEEEEEEET---------------------------------TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTT
T ss_pred CCCEEEEEeC---------------------------------CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCC
Confidence 1235654321 36899999986 55555543 2 5799999987
Q ss_pred CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--c-eEEEecCCceecCCccccCCCCC
Q 004255 203 RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--R-WLAYASNTLLLSNSGRLSPQNLT 278 (765)
Q Consensus 203 ~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r-~LAyas~~~~~~~~G~~s~~~lt 278 (765)
++|+++. ++.|++||+ +++.+.++..|..+ ...++++| + +|+.++.+..+ ..|+..+
T Consensus 176 ~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~-------------v~~~~~~~~~~~~l~s~~~d~~i-----~iwd~~~ 236 (383)
T 3ei3_B 176 QMLATGDSTGRLLLLGL-DGHEIFKEKLHKAK-------------VTHAEFNPRCDWLMATSSVDATV-----KLWDLRN 236 (383)
T ss_dssp TEEEEEETTSEEEEEET-TSCEEEEEECSSSC-------------EEEEEECSSCTTEEEEEETTSEE-----EEEEGGG
T ss_pred CEEEEECCCCCEEEEEC-CCCEEEEeccCCCc-------------EEEEEECCCCCCEEEEEeCCCEE-----EEEeCCC
Confidence 6777765 468999999 67788888776652 35688888 4 78887765311 1233221
Q ss_pred CCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCC-ccccccccccccCCCCeEEEEECC
Q 004255 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS-VWKVGRHAGADMDNAGIVVVKDFV 357 (765)
Q Consensus 279 ~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~-~~~~~~~~~~~~~~dG~V~IwDl~ 357 (765)
... .+.++ +++ ++ ......+.+++ +++ .++.+..||.|+|||+.
T Consensus 237 ~~~--------~~~~~----------------~~~-~~------~~~v~~~~~s~~~~~----~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 237 IKD--------KNSYI----------------AEM-PH------EKPVNAAYFNPTDST----KLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp CCS--------TTCEE----------------EEE-EC------SSCEEEEEECTTTSC----EEEEEESSSEEEEEETT
T ss_pred CCc--------ccceE----------------EEe-cC------CCceEEEEEcCCCCC----EEEEEcCCCcEEEEECC
Confidence 100 00000 111 00 01111222233 222 24466789999999999
Q ss_pred CCcEEEEeccCC-----------------CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255 358 TRAIISQFKAHT-----------------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (765)
Q Consensus 358 s~~~i~~~~aH~-----------------~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~ 420 (765)
+++.+..+.+|. ..+.+++|+|+|++ +++.||. |+|||+.. + .
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~-i~iwd~~~-------~----------~ 341 (383)
T 3ei3_B 282 DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT-IDIYDANS-------G----------G 341 (383)
T ss_dssp BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC-EEEEETTT-------C----------C
T ss_pred CCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe-EEEEecCC-------C----------c
Confidence 988777777653 34555777777776 6777664 99999965 3 4
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
.+..+....+...+.+++|+||+++|++++ ||+|+|||++.
T Consensus 342 ~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 342 LVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 667775433345677889999999999997 99999999874
No 50
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.88 E-value=8.2e-21 Score=204.45 Aligned_cols=248 Identities=14% Similarity=0.130 Sum_probs=180.3
Q ss_pred CCCCCcEEEEEEeeccCCCCCCC---eEEEEEecCc-EEEEEccCCCcc-----eEeeeec-----cCCEEEEEEecCCC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFK---QVLLLGYQNG-FQVLDVEDASNF-----NELVSKR-----DGPVSFLQMQPFPV 118 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~---~vL~~G~~~G-~qVWdv~~~g~~-----~ells~~-----dg~V~~v~~lP~p~ 118 (765)
..+++.|..+.|..-. ...+ +.|++|..+| ++|||++. ++. ...+..| +++|.++++.|.+.
T Consensus 59 ~~h~~~v~~~~~~~~~---~~~g~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 134 (397)
T 1sq9_A 59 FVHKSGLHHVDVLQAI---ERDAFELCLVATTSFSGDLLFYRITR-EDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 134 (397)
T ss_dssp ECCTTCEEEEEEEEEE---ETTTEEEEEEEEEETTSCEEEEEEEE-CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-
T ss_pred ecCCCcEEEEEEeccc---ccCCccccEEEEEcCCCCEEEEEccC-CcccccccceeecccccccCCCcEEEEEEeeccC
Confidence 3567778888887610 0114 6788877765 99999964 554 5667777 58999999993210
Q ss_pred CCCCCCCccccCCE-EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC------CeEEE----
Q 004255 119 KDDGCEGFRKLHPF-LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS------HCYEH---- 187 (765)
Q Consensus 119 ~~~~~d~f~~srpL-Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlkt------g~~v~---- 187 (765)
....+ |++.+. ++.|++||+++ ++.+.
T Consensus 135 ---------~~~~~~l~~~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~ 172 (397)
T 1sq9_A 135 ---------RLLSHRLVATDV---------------------------------KGTTYIWKFHPFADESNSLTLNWSPT 172 (397)
T ss_dssp ------------CEEEEEEET---------------------------------TSCEEEEEEESSSSHHHHTTTCCCCE
T ss_pred ---------CCCceEEEEEeC---------------------------------CCcEEEEeCCccccccccceeeccCc
Confidence 01235 554221 25899999998 77666
Q ss_pred -EEe--------CCCCEEEEEecCC-eEEEEeC-CeEEEEECCCCceeEEEEe---c---CCcccCCCCcccccccccee
Q 004255 188 -VLR--------FRSSVCMVRCSPR-IVAVGLA-TQIYCFDALTLENKFSVLT---Y---PVPQLAGQGAVGINVGYGPM 250 (765)
Q Consensus 188 -tL~--------~~s~V~sV~~s~~-~LaV~~~-~~I~iwD~~t~~~l~tl~t---~---p~p~~~~~~~~~~~~~~~~~ 250 (765)
.+. ....|.++++++. +|+++.. +.|++||+.+++.+..+.. | ..+ ...+
T Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~-------------i~~i 239 (397)
T 1sq9_A 173 LELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS-------------IRSV 239 (397)
T ss_dssp EEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC-------------EEEE
T ss_pred ceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc-------------cceE
Confidence 664 2568999999874 6676654 5799999999988888876 5 321 2334
Q ss_pred EEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCC
Q 004255 251 AVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (765)
Q Consensus 251 Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~ 328 (765)
+++| ++|+.
T Consensus 240 ~~~~~~~~l~~--------------------------------------------------------------------- 250 (397)
T 1sq9_A 240 KFSPQGSLLAI--------------------------------------------------------------------- 250 (397)
T ss_dssp EECSSTTEEEE---------------------------------------------------------------------
T ss_pred EECCCCCEEEE---------------------------------------------------------------------
Confidence 4433 22222
Q ss_pred ccCCCccccccccccccCCC---CeEEEEECCCCcEEEEecc-------------CCCCeEEEEECCCCCEEEEEEcCCC
Q 004255 329 VSPNSVWKVGRHAGADMDNA---GIVVVKDFVTRAIISQFKA-------------HTSPISALCFDPSGTLLVTASVYGN 392 (765)
Q Consensus 329 ~s~s~~~~~~~~~~~~~~~d---G~V~IwDl~s~~~i~~~~a-------------H~~~IsaLaFSpdG~lLATaS~dGt 392 (765)
+..| |.|+|||+.+++.+..+.+ |..+|.+++|+|+|.+|++++.||
T Consensus 251 ----------------~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg- 313 (397)
T 1sq9_A 251 ----------------AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG- 313 (397)
T ss_dssp ----------------EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS-
T ss_pred ----------------EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC-
Confidence 2345 8999999999999999999 999999999999999999999966
Q ss_pred EEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-----cc--------------ccccEEEEEEccCC----------
Q 004255 393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-----GI--------------TSATIQDICFSHYS---------- 443 (765)
Q Consensus 393 ~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r-----G~--------------~~a~I~slaFSpDg---------- 443 (765)
.|+|||+.. + ..+..+.. ++ +...|++++|+|||
T Consensus 314 ~i~iwd~~~-------~----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~ 376 (397)
T 1sq9_A 314 KLRFWDVKT-------K----------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 376 (397)
T ss_dssp EEEEEETTT-------T----------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred eEEEEEcCC-------C----------ceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence 599999965 2 45566641 21 14679999999999
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 004255 444 QWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 444 ~~Las~S~dgTVhIwdl~~ 462 (765)
++|++++.||+|+||++..
T Consensus 377 ~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 377 ESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp CEEEEEETTTEEEEEEEEC
T ss_pred ceEEEecCCCcEEEEEcCC
Confidence 7999999999999999875
No 51
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.88 E-value=4.7e-21 Score=207.82 Aligned_cols=241 Identities=14% Similarity=0.097 Sum_probs=164.5
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEec------Cc-EEEEEccCCC---cceEeeeeccCCEEEEEEecCCCCCCC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ------NG-FQVLDVEDAS---NFNELVSKRDGPVSFLQMQPFPVKDDG 122 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~------~G-~qVWdv~~~g---~~~ells~~dg~V~~v~~lP~p~~~~~ 122 (765)
..+...|.-+.|.. ++++|++|.. +| +++|+..... .+......|.+.|..|++.|+
T Consensus 39 ~~H~~~V~~v~fSp-------DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d------ 105 (357)
T 4g56_B 39 ACMEVQIGAVRYRR-------DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE------ 105 (357)
T ss_dssp -CCCSEEEEEEECS-------SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT------
T ss_pred ccccCCEEEEEECC-------CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC------
Confidence 44788899999955 4788999886 33 7888874321 122233467788999999974
Q ss_pred CCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-----CCCCEEE
Q 004255 123 CEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-----FRSSVCM 197 (765)
Q Consensus 123 ~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~-----~~s~V~s 197 (765)
..+| +.+. +++|+|||+.+++.+.... +.+.|.+
T Consensus 106 -------~~~l-~~s~---------------------------------dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~ 144 (357)
T 4g56_B 106 -------KGIL-VASD---------------------------------SGAVELWEILEKESLLVNKFAKYEHDDIVKT 144 (357)
T ss_dssp -------TEEE-EEET---------------------------------TSCEEEC--------CCCCEEECCCSSCEEE
T ss_pred -------CCEE-EEEC---------------------------------CCEEEEeeccccceeEEEeeccCCCCCCEEE
Confidence 1243 3221 2589999999988664432 3468999
Q ss_pred EEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccC
Q 004255 198 VRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSP 274 (765)
Q Consensus 198 V~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~ 274 (765)
|++++ ++|+++. ++.|++||+.+++++..+..|..+ ...+++++ +.
T Consensus 145 v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~-------------v~~v~~s~-------~~----------- 193 (357)
T 4g56_B 145 LSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE-------------VNCVAACP-------GK----------- 193 (357)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECT-------TC-----------
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC-------------EEEEEEcc-------CC-----------
Confidence 99997 5777765 567999999999988888776542 12333321 10
Q ss_pred CCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEE
Q 004255 275 QNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVK 354 (765)
Q Consensus 275 ~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~Iw 354 (765)
..+ ++.+..||.|+||
T Consensus 194 ----------------~~~------------------------------------------------~~s~~~dg~v~~w 209 (357)
T 4g56_B 194 ----------------DTI------------------------------------------------FLSCGEDGRILLW 209 (357)
T ss_dssp ----------------SSC------------------------------------------------EEEEETTSCEEEC
T ss_pred ----------------Cce------------------------------------------------eeeeccCCceEEE
Confidence 000 1134568999999
Q ss_pred ECCCCcEEEEe--ccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc
Q 004255 355 DFVTRAIISQF--KAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS 431 (765)
Q Consensus 355 Dl~s~~~i~~~--~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~ 431 (765)
|+.+++.+..+ ..|...|.+++|+|+ +.+||+|+.|+. |+|||+.. + ..+..+. + +.
T Consensus 210 d~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~wd~~~-------~----------~~~~~~~-~-~~ 269 (357)
T 4g56_B 210 DTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN-VSLVNIKN-------P----------DSAQTSA-V-HS 269 (357)
T ss_dssp CTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEEESSC-------G----------GGCEEEC-C-CS
T ss_pred ECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc-eeEEECCC-------C----------cEeEEEe-c-cc
Confidence 99998876655 467788999999997 578999999765 99999965 2 2444553 3 33
Q ss_pred ccEEEEEEccCC-CEEEEEeCCCcEEEEeCCC
Q 004255 432 ATIQDICFSHYS-QWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 432 a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~ 462 (765)
..|++|+|+||+ ++||+++.|++|+|||++.
T Consensus 270 ~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 270 QNITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp SCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 569999999998 6899999999999999864
No 52
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.88 E-value=1.1e-20 Score=205.43 Aligned_cols=252 Identities=13% Similarity=0.115 Sum_probs=176.9
Q ss_pred CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
++.|++|..+| ++|||+. .+.+..++..|.++|.++++.|+ ..+|++.+.
T Consensus 109 ~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~-------------~~~l~s~s~--------------- 159 (420)
T 3vl1_A 109 MRRFILGTTEGDIKVLDSN-FNLQREIDQAHVSEITKLKFFPS-------------GEALISSSQ--------------- 159 (420)
T ss_dssp SCEEEEEETTSCEEEECTT-SCEEEEETTSSSSCEEEEEECTT-------------SSEEEEEET---------------
T ss_pred CCEEEEEECCCCEEEEeCC-CcceeeecccccCccEEEEECCC-------------CCEEEEEeC---------------
Confidence 56788888776 9999995 57777788899999999999974 236665321
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t 229 (765)
+++|++||+.+++.+..+.. ...|.++++++ ++|+++. ++.|++||+.+++.+.++..
T Consensus 160 ------------------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 221 (420)
T 3vl1_A 160 ------------------DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 221 (420)
T ss_dssp ------------------TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECB
T ss_pred ------------------CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeec
Confidence 36899999999999999985 46899999987 5677655 56799999999998888876
Q ss_pred cCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccc
Q 004255 230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (765)
Q Consensus 230 ~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~ 309 (765)
+..+.. ....+++.+ ...... .......
T Consensus 222 ~~~~~~----------~v~~~~~~~------~~~~~~-------~~~~~~~----------------------------- 249 (420)
T 3vl1_A 222 KENPHD----------GVNSIALFV------GTDRQL-------HEISTSK----------------------------- 249 (420)
T ss_dssp TTBTTC----------CEEEEEEEE------CCCSSC-------GGGCCCC-----------------------------
T ss_pred CCCCCC----------CccEEEEec------CCccee-------eecccCc-----------------------------
Confidence 443200 112233211 111000 0000000
Q ss_pred ceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCC-EEEEE
Q 004255 310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGT-LLVTA 387 (765)
Q Consensus 310 ~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~-lLATa 387 (765)
.....++++++ .++.+..||.|+|||+.+++.+..+. +|..+|.+++|+|+|. +|+++
T Consensus 250 ----------------v~~~~~s~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g 309 (420)
T 3vl1_A 250 ----------------KNNLEFGTYGK----YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG 309 (420)
T ss_dssp ----------------CCTTCSSCTTE----EEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred ----------------ccceEEcCCCC----EEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence 01111222222 23456789999999999998877765 5899999999999999 99999
Q ss_pred EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255 388 SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 388 S~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g 464 (765)
+.|| .|+|||+.. +. ..+..+. +++...|.++.| +|+++|++++.|++|+||++....
T Consensus 310 ~~dg-~i~vwd~~~-------~~---------~~~~~~~-~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 310 YENG-MLAQWDLRS-------PE---------CPVGEFL-INEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp ETTS-EEEEEETTC-------TT---------SCSEEEE-ESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred eCCC-eEEEEEcCC-------Cc---------Cchhhhh-ccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence 9966 599999965 21 1234443 334457888855 588999999999999999998743
No 53
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.88 E-value=1.9e-21 Score=211.88 Aligned_cols=264 Identities=16% Similarity=0.134 Sum_probs=171.8
Q ss_pred EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCC
Q 004255 86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS 165 (765)
Q Consensus 86 ~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~ 165 (765)
..+|+.. ...+..++.+|.++|.++++.|+ ..+|+..+.
T Consensus 48 ~~~~~~~-~~~~~~~l~gH~~~V~~~~~sp~-------------~~~l~s~s~--------------------------- 86 (380)
T 3iz6_a 48 AVSFNPT-DLVCCRTLQGHSGKVYSLDWTPE-------------KNWIVSASQ--------------------------- 86 (380)
T ss_dssp CCCCCCC-CCEEEEEECCCSSCEEEEEECTT-------------SSCEEEEET---------------------------
T ss_pred ccccccc-eeEEeecccccccEEEEEEEcCC-------------CCEEEEEeC---------------------------
Confidence 3456653 34466789999999999999975 236655221
Q ss_pred CCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCce-------eEEEEecCCcc
Q 004255 166 GNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLEN-------KFSVLTYPVPQ 234 (765)
Q Consensus 166 ~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~-------l~tl~t~p~p~ 234 (765)
+++|+|||+.+++.+++++.+ ..|.++++++ ++|+++. ++.|++||+.+... ...+.+|...
T Consensus 87 ------D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~- 159 (380)
T 3iz6_a 87 ------DGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY- 159 (380)
T ss_dssp ------TSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSC-
T ss_pred ------CCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcc-
Confidence 369999999999999999876 5799999987 6777754 56799999876431 1222233221
Q ss_pred cCCCCccccccccceeEEcc---ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccce
Q 004255 235 LAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK 311 (765)
Q Consensus 235 ~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~k 311 (765)
...+++.| ..|++++.+.. ...|+..+.. .+..+.. ...
T Consensus 160 ------------v~~~~~~~~~~~~l~s~s~D~~-----i~~wd~~~~~------------~~~~~~~----~~~----- 201 (380)
T 3iz6_a 160 ------------ASSCQYVPDQETRLITGSGDQT-----CVLWDVTTGQ------------RISIFGS----EFP----- 201 (380)
T ss_dssp ------------CCCCBCCSSSSSCEEEECTTSC-----EEEECTTTCC------------EEEEECC----CSS-----
T ss_pred ------------eEEEEEecCCCCEEEEECCCCc-----EEEEEcCCCc------------EEEEeec----ccC-----
Confidence 12344544 45777665421 1234332210 0000000 000
Q ss_pred eecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC
Q 004255 312 TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTLLVTASVY 390 (765)
Q Consensus 312 tls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~-s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d 390 (765)
.++.. ......+++ .+...+++++.||+|+|||+. .++.+..+.+|..+|.+++|+|+|.+|||||.|
T Consensus 202 --~~h~~------~v~~~~~~~---~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 270 (380)
T 3iz6_a 202 --SGHTA------DVLSLSINS---LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270 (380)
T ss_dssp --SSCCS------CEEEEEECS---SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSS
T ss_pred --CCCcc------CeEEEEeec---CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCC
Confidence 00000 000111111 011124577899999999998 457888999999999999999999999999997
Q ss_pred CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-----cccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-----SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 391 Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~-----~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g 464 (765)
|+ |+|||+.. + ..+..+..... ...|.+++|+|||++|++++.||+|+|||+....
T Consensus 271 ~~-i~lwd~~~-------~----------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 271 GT-CRLFDMRT-------G----------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp SC-EEEEETTT-------T----------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC
T ss_pred Ce-EEEEECCC-------C----------cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc
Confidence 75 99999965 3 34444432111 1248899999999999999999999999987543
No 54
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.88 E-value=2.6e-20 Score=218.89 Aligned_cols=239 Identities=16% Similarity=0.192 Sum_probs=170.9
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
.+|.+.|..+.|.. .++.|++|..+| ++|||+. .+.....+..|.++|.++++.|+. .
T Consensus 427 ~~h~~~v~~v~~s~-------~g~~l~sgs~Dg~v~vwd~~-~~~~~~~~~~h~~~v~~~~~s~~~-------------~ 485 (694)
T 3dm0_A 427 TGHSHFVEDVVLSS-------DGQFALSGSWDGELRLWDLA-AGVSTRRFVGHTKDVLSVAFSLDN-------------R 485 (694)
T ss_dssp ECCSSCEEEEEECT-------TSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEECTTS-------------S
T ss_pred cCCCCcEEEEEECC-------CCCEEEEEeCCCcEEEEECC-CCcceeEEeCCCCCEEEEEEeCCC-------------C
Confidence 45666777777754 367888888776 9999995 566777888999999999999742 2
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe----CCCCEEEEEecCC----
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR----FRSSVCMVRCSPR---- 203 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~----~~s~V~sV~~s~~---- 203 (765)
+|++.+. +++|+|||+.......... +...|.++++++.
T Consensus 486 ~l~s~s~---------------------------------D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 486 QIVSASR---------------------------------DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp CEEEEET---------------------------------TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEEEeC---------------------------------CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 5554221 3689999987554433322 3457999999873
Q ss_pred eEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCC
Q 004255 204 IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPS 280 (765)
Q Consensus 204 ~LaV~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~ 280 (765)
+|+++ .++.|++||+.+.++..++..|..+ ...++++| ++|
T Consensus 533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~-------------v~~v~~spdg~~l----------------------- 576 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGY-------------VSTVAVSPDGSLC----------------------- 576 (694)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSC-------------EEEEEECTTSSEE-----------------------
T ss_pred eEEEEeCCCeEEEEECCCCcEEEEEcCCCCC-------------EEEEEEeCCCCEE-----------------------
Confidence 46655 4668999999999888888776542 23344433 122
Q ss_pred CCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 004255 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (765)
Q Consensus 281 ~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~ 360 (765)
++++.||.|+|||+.+++
T Consensus 577 --------------------------------------------------------------~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 577 --------------------------------------------------------------ASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp --------------------------------------------------------------EEEETTSBCEEEETTTTE
T ss_pred --------------------------------------------------------------EEEeCCCeEEEEECCCCc
Confidence 134568899999999999
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec------------c
Q 004255 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR------------G 428 (765)
Q Consensus 361 ~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r------------G 428 (765)
.+..+..| ..|.+++|+|++.+|++++. + .|+|||+... ..+..+.. +
T Consensus 595 ~~~~~~~~-~~v~~~~~sp~~~~l~~~~~-~-~i~iwd~~~~-----------------~~~~~~~~~~~~~~~~~~~~~ 654 (694)
T 3dm0_A 595 KLYSLEAN-SVIHALCFSPNRYWLCAATE-H-GIKIWDLESK-----------------SIVEDLKVDLKAEAEKADNSG 654 (694)
T ss_dssp EEECCBCS-SCEEEEEECSSSSEEEEEET-T-EEEEEETTTT-----------------EEEEEECCCCC----------
T ss_pred eEEEecCC-CcEEEEEEcCCCcEEEEEcC-C-CEEEEECCCC-----------------CChhhhccccccccccccccc
Confidence 98888765 68999999999999988876 4 4999999652 12222210 0
Q ss_pred -----cccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 429 -----ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 429 -----~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
.+...+.+++|||||++|++++.||+|+||++..+
T Consensus 655 ~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~~ 694 (694)
T 3dm0_A 655 PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 694 (694)
T ss_dssp ------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred cccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccCC
Confidence 00113789999999999999999999999999753
No 55
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.87 E-value=7.2e-20 Score=202.37 Aligned_cols=275 Identities=15% Similarity=0.130 Sum_probs=195.8
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
..+.+.|..+.|+ +..|++|..+| ++|||++ .+++...+..|.++|.++.+.+ .
T Consensus 156 ~~h~~~v~~~~~~---------~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~-------------~-- 210 (445)
T 2ovr_B 156 VGHTGGVWSSQMR---------DNIIISGSTDRTLKVWNAE-TGECIHTLYGHTSTVRCMHLHE-------------K-- 210 (445)
T ss_dssp CCCSSCEEEEEEE---------TTEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEEET-------------T--
T ss_pred cCCCCCEEEEEec---------CCEEEEEeCCCeEEEEECC-cCcEEEEECCCCCcEEEEEecC-------------C--
Confidence 3456666666664 23677777766 9999995 5777788888999999998753 1
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEEEe-
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL- 209 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV~~- 209 (765)
.|++.+. +++|++||+.+++.+..+..+ ..|.++.+++++|+++.
T Consensus 211 ~l~s~s~---------------------------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 257 (445)
T 2ovr_B 211 RVVSGSR---------------------------------DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY 257 (445)
T ss_dssp EEEEEET---------------------------------TSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET
T ss_pred EEEEEeC---------------------------------CCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcC
Confidence 5554221 368999999999999999754 68999999988888766
Q ss_pred CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCC
Q 004255 210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (765)
Q Consensus 210 ~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~ 289 (765)
++.|++||+.+++++.++..|..+ ...+++..++|+.++.+..+ ..|+..+.
T Consensus 258 dg~i~iwd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~~~~~d~~i-----~i~d~~~~---------- 309 (445)
T 2ovr_B 258 DFMVKVWDPETETCLHTLQGHTNR-------------VYSLQFDGIHVVSGSLDTSI-----RVWDVETG---------- 309 (445)
T ss_dssp TSCEEEEEGGGTEEEEEECCCSSC-------------EEEEEECSSEEEEEETTSCE-----EEEETTTC----------
T ss_pred CCEEEEEECCCCcEeEEecCCCCc-------------eEEEEECCCEEEEEeCCCeE-----EEEECCCC----------
Confidence 557999999999988888766552 34566666888887765211 12322111
Q ss_pred CCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc--
Q 004255 290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA-- 367 (765)
Q Consensus 290 ~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a-- 367 (765)
..+ +++..+.. ......+ ....++.+..||.|+|||+.+++.+..+.+
T Consensus 310 --~~~----------------~~~~~~~~------~v~~~~~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 359 (445)
T 2ovr_B 310 --NCI----------------HTLTGHQS------LTSGMEL------KDNILVSGNADSTVKIWDIKTGQCLQTLQGPN 359 (445)
T ss_dssp --CEE----------------EEECCCCS------CEEEEEE------ETTEEEEEETTSCEEEEETTTCCEEEEECSTT
T ss_pred --CEE----------------EEEcCCcc------cEEEEEE------eCCEEEEEeCCCeEEEEECCCCcEEEEEccCC
Confidence 000 11111100 0000111 011244677899999999999999999986
Q ss_pred -CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---cccccccEEEEEEccCC
Q 004255 368 -HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGITSATIQDICFSHYS 443 (765)
Q Consensus 368 -H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~---rG~~~a~I~slaFSpDg 443 (765)
|..+|.+++|+ +.+|++++.|| .|+|||+.. | ..+..+. .+.+...|++++|+||+
T Consensus 360 ~~~~~v~~~~~~--~~~l~s~~~dg-~v~iwd~~~-------~----------~~~~~~~~~~~~~~~~~v~~~~~s~~~ 419 (445)
T 2ovr_B 360 KHQSAVTCLQFN--KNFVITSSDDG-TVKLWDLKT-------G----------EFIRNLVTLESGGSGGVVWRIRASNTK 419 (445)
T ss_dssp SCSSCEEEEEEC--SSEEEEEETTS-EEEEEETTT-------C----------CEEEEEEECTTGGGTCEEEEEEECSSE
T ss_pred CCCCCEEEEEEC--CCEEEEEeCCC-eEEEEECCC-------C----------ceeeeeeccccCCCCceEEEEEecCCE
Confidence 88999999996 68999999966 599999965 3 3455552 23345679999999999
Q ss_pred CEEEEEeCCCc----EEEEeCCCC
Q 004255 444 QWIAIVSSKGT----CHVFVLSPF 463 (765)
Q Consensus 444 ~~Las~S~dgT----VhIwdl~~~ 463 (765)
.+||+++.||+ ++|||++..
T Consensus 420 ~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 420 LVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEEcccCCCCccEEEEEECCCC
Confidence 99999999998 999999763
No 56
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.87 E-value=9.4e-20 Score=201.67 Aligned_cols=257 Identities=16% Similarity=0.200 Sum_probs=175.9
Q ss_pred CCCCCc-EEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 53 EDLKDQ-VTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 53 ~~~~~~-v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
.++.+. +.++.||. +.|++|+.+| ++|||+. .+++...+..|.++|.++++.|+ .
T Consensus 118 ~~h~~~v~~~~~~~~---------~~l~sgs~dg~i~vwd~~-~~~~~~~~~~h~~~V~~l~~~~~------------~- 174 (464)
T 3v7d_B 118 RGHMTSVITCLQFED---------NYVITGADDKMIRVYDSI-NKKFLLQLSGHDGGVWALKYAHG------------G- 174 (464)
T ss_dssp ECCSSSCEEEEEEET---------TEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECST------------T-
T ss_pred cCCCCCcEEEEEECC---------CEEEEEcCCCcEEEEECC-CCcEEEEEeCCCcCEEEEEEcCC------------C-
Confidence 455555 46666643 3777777776 9999995 57788888899999999999863 1
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecC----CeE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP----RIV 205 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~----~~L 205 (765)
+|++.+. +++|++||+++++++..+.. .+.|.++++++ ++|
T Consensus 175 -~l~s~s~---------------------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l 220 (464)
T 3v7d_B 175 -ILVSGST---------------------------------DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI 220 (464)
T ss_dssp -EEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEE
T ss_pred -EEEEEeC---------------------------------CCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEE
Confidence 5554221 36899999999999999984 57999998873 566
Q ss_pred EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCC
Q 004255 206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (765)
Q Consensus 206 aV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~ 284 (765)
+++. ++.|++||+.+.+.......... ...+...+ ...+..
T Consensus 221 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~--------------~~~~~~~~------~~~~~~------------------ 262 (464)
T 3v7d_B 221 VTGSRDNTLHVWKLPKESSVPDHGEEHD--------------YPLVFHTP------EENPYF------------------ 262 (464)
T ss_dssp EEEETTSCEEEEECCCCCCC------CC--------------SSEEESCG------GGCTTE------------------
T ss_pred EEEcCCCcEEEeeCCCCcccccccccCC--------------cceEeecc------CCCeEE------------------
Confidence 6655 56899999998765443321110 00000000 000000
Q ss_pred CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE
Q 004255 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ 364 (765)
Q Consensus 285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~ 364 (765)
+ .++.++... ...+ +++ +..++.+..||.|++||+.+++.+..
T Consensus 263 ---------~----------------~~~~~~~~~------v~~~--~~~----~~~l~~~~~d~~i~vwd~~~~~~~~~ 305 (464)
T 3v7d_B 263 ---------V----------------GVLRGHMAS------VRTV--SGH----GNIVVSGSYDNTLIVWDVAQMKCLYI 305 (464)
T ss_dssp ---------E----------------EEECCCSSC------EEEE--EEE----TTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ---------E----------------EEccCccce------EEEE--cCC----CCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 0 000000000 0000 000 01234567899999999999999999
Q ss_pred eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 004255 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ 444 (765)
Q Consensus 365 ~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~ 444 (765)
+.+|..+|.+++|+|+|++|++++.||+ |+|||+.. + ..+..+. + +...|.+++|+ ++
T Consensus 306 ~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vwd~~~-------~----------~~~~~~~-~-h~~~v~~~~~~--~~ 363 (464)
T 3v7d_B 306 LSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLEN-------G----------ELMYTLQ-G-HTALVGLLRLS--DK 363 (464)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTT-------T----------EEEEEEC-C-CSSCEEEEEEC--SS
T ss_pred ecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCC-------C----------cEEEEEe-C-CCCcEEEEEEc--CC
Confidence 9999999999999999999999999775 99999965 3 4666664 4 34579999998 58
Q ss_pred EEEEEeCCCcEEEEeCCCC
Q 004255 445 WIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 445 ~Las~S~dgTVhIwdl~~~ 463 (765)
+|++++.||+|++||+...
T Consensus 364 ~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 364 FLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp EEEEEETTSEEEEEETTTC
T ss_pred EEEEEeCCCcEEEEECCCC
Confidence 9999999999999999863
No 57
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.87 E-value=1.2e-20 Score=199.02 Aligned_cols=267 Identities=14% Similarity=0.127 Sum_probs=173.9
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEE
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLL 133 (765)
+++.|..+.|.. +...++.|++|..+| ++|||+.........+..|.++|..+.+.|.-. |.....+|
T Consensus 64 ~~~~v~~~~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~s~~~~~l 132 (357)
T 3i2n_A 64 KAKPIKCGTFGA----TSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLG-------IGEGAPEI 132 (357)
T ss_dssp ESSCEEEEECTT----CCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGG-------CC-CCCEE
T ss_pred ccCcEEEEEEcC----CCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccc-------cCCCccEE
Confidence 344555555543 111246788887766 999999654436778889999999998875211 33444577
Q ss_pred EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe-EEEEEeCC-----CCEEEEE----ecC-
Q 004255 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC-YEHVLRFR-----SSVCMVR----CSP- 202 (765)
Q Consensus 134 avv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~-~v~tL~~~-----s~V~sV~----~s~- 202 (765)
++.+. +++|++||+++++ .+..+..+ ..|.++. +++
T Consensus 133 ~~~~~---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 179 (357)
T 3i2n_A 133 VTGSR---------------------------------DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQE 179 (357)
T ss_dssp EEEET---------------------------------TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-C
T ss_pred EEEeC---------------------------------CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCC
Confidence 65321 3689999999987 77777642 2788888 443
Q ss_pred -CeEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCC
Q 004255 203 -RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (765)
Q Consensus 203 -~~LaV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~ 280 (765)
++|+++.. +.|++||+.+++.... ..+..+ ...++++|. ..+.
T Consensus 180 ~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~-------------v~~~~~~~~----~~~~----------------- 224 (357)
T 3i2n_A 180 ERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNG-------------VCSLEFDRK----DISM----------------- 224 (357)
T ss_dssp CCEEEEEETTSEEEEEETTTTEEEEE-EECSSC-------------EEEEEESCS----SSSC-----------------
T ss_pred CCEEEEEccCCeEEEEECccCceeee-cCCCCc-------------eEEEEcCCC----CCCC-----------------
Confidence 67777665 6899999999876433 223321 123333220 0000
Q ss_pred CCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 004255 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (765)
Q Consensus 281 ~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~ 360 (765)
. .++.+..+|.|+|||+.+++
T Consensus 225 ----------~-------------------------------------------------~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 225 ----------N-------------------------------------------------KLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp ----------C-------------------------------------------------EEEEEESTTEEEEEEEEEEE
T ss_pred ----------C-------------------------------------------------EEEEECCCCeEEEEeCcCCC
Confidence 0 01134568899999998876
Q ss_pred EEEEec-----cCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCccc---CCCCCCccccCCcceEEEEEeccccc
Q 004255 361 IISQFK-----AHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMR---SGSGNHKYDWNSSHVHLYKLHRGITS 431 (765)
Q Consensus 361 ~i~~~~-----aH~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~~~~~~---~~sG~~~~~~~~s~~~l~~l~rG~~~ 431 (765)
.+..+. +|..+|.+++|+|+|. +|++++.|| .|+|||+...... ...|. ..........+..+. + +.
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~-~-~~ 321 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG-GLHLWKYEYPIQRSKKDSEGI-EMGVAGSVSLLQNVT-L-ST 321 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS-EEEEEEEECCSCC--CCTTSC-CCCCCCEEEEEEEEE-C-CS
T ss_pred cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC-cEEEeecCCCcccccccCCCC-ccccccccceeeccc-c-CC
Confidence 554444 9999999999999999 899999966 5999998642100 00000 000001123455554 3 34
Q ss_pred ccEEEEEEccCCCEEE-EEeCCCcEEEEeCCCC
Q 004255 432 ATIQDICFSHYSQWIA-IVSSKGTCHVFVLSPF 463 (765)
Q Consensus 432 a~I~slaFSpDg~~La-s~S~dgTVhIwdl~~~ 463 (765)
..|++++|+||+++|+ +++.||+|+||++...
T Consensus 322 ~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 322 QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 5799999999999998 8999999999999764
No 58
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.87 E-value=7.9e-20 Score=227.20 Aligned_cols=285 Identities=15% Similarity=0.101 Sum_probs=204.8
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
.++++.|..+.|.. +++.|++|..+| ++|||+. +++....+..|.++|.++++.|+ ..
T Consensus 612 ~~h~~~v~~~~~s~-------~~~~l~s~~~d~~i~vw~~~-~~~~~~~~~~h~~~v~~~~~s~~-------------~~ 670 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQ-------DGQRIASCGADKTLQVFKAE-TGEKLLDIKAHEDEVLCCAFSSD-------------DS 670 (1249)
T ss_dssp CCCSSCEEEEEECT-------TSSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTT-------------SS
T ss_pred ecccccEEEEEECC-------CCCEEEEEeCCCeEEEEECC-CCCEEEEeccCCCCEEEEEEecC-------------CC
Confidence 45778888888865 366888888776 9999995 56677788899999999999975 23
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC----CeEE
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP----RIVA 206 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~----~~La 206 (765)
+||+.+. +++|++||+.+++.+.++..+ ..|.++++++ .+|+
T Consensus 671 ~l~s~~~---------------------------------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 717 (1249)
T 3sfz_A 671 YIATCSA---------------------------------DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA 717 (1249)
T ss_dssp EEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEE
T ss_pred EEEEEeC---------------------------------CCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEE
Confidence 6665321 368999999999999999865 6899999976 3666
Q ss_pred EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCC
Q 004255 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVS 283 (765)
Q Consensus 207 V~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s 283 (765)
++. ++.|++||+.++++..++..|..+ ...++++| ++|++++.+..+ ..|+..+...
T Consensus 718 sg~~d~~v~vwd~~~~~~~~~~~~h~~~-------------v~~~~~sp~~~~l~s~s~dg~v-----~vwd~~~~~~-- 777 (1249)
T 3sfz_A 718 TGSNDFFLKLWDLNQKECRNTMFGHTNS-------------VNHCRFSPDDELLASCSADGTL-----RLWDVRSANE-- 777 (1249)
T ss_dssp EEETTSCEEEEETTSSSEEEEECCCSSC-------------EEEEEECSSTTEEEEEESSSEE-----EEEEGGGTEE--
T ss_pred EEeCCCeEEEEECCCcchhheecCCCCC-------------EEEEEEecCCCEEEEEECCCeE-----EEEeCCCCcc--
Confidence 655 457999999999999888877653 35688888 788888765321 1222211100
Q ss_pred CCcCCCCCcceeeehhhhhhhhhcccceeec--ccc-cccCC----CCCCCCccCCCccccccccccccCCCCeEEEEEC
Q 004255 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLS--KYC-QELLP----DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 356 (765)
Q Consensus 284 ~s~sp~~gslva~~a~d~~k~la~G~~ktls--~~~-~~~~p----~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl 356 (765)
. +++. .+. ....+ ........++++++.. +. ..+|.+.+||+
T Consensus 778 ----------~----------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l----~~-~~~~~v~~~d~ 826 (1249)
T 3sfz_A 778 ----------R----------------KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI----IV-AAKNKVLLFDI 826 (1249)
T ss_dssp ----------E----------------EEEECCCCC--------CCCCCBCCCCBCTTSSEE----EE-EETTEEEEEET
T ss_pred ----------c----------------ceecccccccccCCccccccceEEEEEECCCCCEE----EE-EcCCcEEEEEe
Confidence 0 0000 000 00000 0011223334433322 12 23789999999
Q ss_pred CCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEE
Q 004255 357 VTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQ 435 (765)
Q Consensus 357 ~s~~~i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~ 435 (765)
.++..+..+. +|..+|.+++|+|+|.+|++++.+|. |++||+.+ + ..+..+. + +...|.
T Consensus 827 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~-v~vwd~~~-------~----------~~~~~~~-~-h~~~v~ 886 (1249)
T 3sfz_A 827 HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC-VELWNIDS-------R----------LKVADCR-G-HLSWVH 886 (1249)
T ss_dssp TTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSC-EEEEETTT-------T----------EEEEEEC-C-CSSCEE
T ss_pred cCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCe-EEEEEcCC-------C----------ceeeecC-C-CccceE
Confidence 9999888876 89999999999999999999999775 99999965 3 4555554 4 345799
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 436 DICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 436 slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
+++|+|||++|++++.||+|++|++..
T Consensus 887 ~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 887 GVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 999999999999999999999999864
No 59
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6.1e-21 Score=209.54 Aligned_cols=252 Identities=13% Similarity=0.205 Sum_probs=176.0
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC--Cc-ceEeee-eccCCEEEEEEecCCCCCCCCCCcc
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA--SN-FNELVS-KRDGPVSFLQMQPFPVKDDGCEGFR 127 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~--g~-~~ells-~~dg~V~~v~~lP~p~~~~~~d~f~ 127 (765)
+.|.+.|..+.|..- .++.|++|..+| ++|||+... +. ....+. .|.++|.+|++.|+
T Consensus 60 ~~h~~~V~~~~~s~~------~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----------- 122 (437)
T 3gre_A 60 ENEPNSITSSAVSPG------ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPN----------- 122 (437)
T ss_dssp TTTTSCEEEEEEECS------SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTT-----------
T ss_pred cCCCCceEEEEECCC------CCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCC-----------
Confidence 667889999998651 256888888877 999999641 21 211222 58899999999974
Q ss_pred ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC---CCeEEEEEeC-------------
Q 004255 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ---SHCYEHVLRF------------- 191 (765)
Q Consensus 128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlk---tg~~v~tL~~------------- 191 (765)
..+|++.+. +++|++||+. +++.+..+..
T Consensus 123 --~~~l~s~s~---------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 167 (437)
T 3gre_A 123 --FDAFAVSSK---------------------------------DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGK 167 (437)
T ss_dssp --SSEEEEEET---------------------------------TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSS
T ss_pred --CCEEEEEeC---------------------------------CCEEEEEEeccccCCceeeccccceeEEEEccCccc
Confidence 236665321 3689999994 6665554432
Q ss_pred CCCEEEEEe--c--CCeEEEEe-CCeEEEEECCCCceeEEEEe--cCCcccCCCCccccccccceeEEcc--ceEEEecC
Q 004255 192 RSSVCMVRC--S--PRIVAVGL-ATQIYCFDALTLENKFSVLT--YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN 262 (765)
Q Consensus 192 ~s~V~sV~~--s--~~~LaV~~-~~~I~iwD~~t~~~l~tl~t--~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~ 262 (765)
...+.++.+ + .++|+++. ++.|++||+.+++++.++.. |..+ ...++++| ++|
T Consensus 168 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~-------------v~~~~~s~~~~~l----- 229 (437)
T 3gre_A 168 NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGA-------------VSSICIDEECCVL----- 229 (437)
T ss_dssp CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCC-------------EEEEEECTTSCEE-----
T ss_pred ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCc-------------eEEEEECCCCCEE-----
Confidence 234555552 2 35676655 56899999999999888876 3321 23344433 111
Q ss_pred CceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccc
Q 004255 263 TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG 342 (765)
Q Consensus 263 ~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~ 342 (765)
T Consensus 230 -------------------------------------------------------------------------------- 229 (437)
T 3gre_A 230 -------------------------------------------------------------------------------- 229 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCeEEEEECCCCcEEEEec-cCCCCeEEE----EECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 004255 343 ADMDNAGIVVVKDFVTRAIISQFK-AHTSPISAL----CFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s~~~i~~~~-aH~~~IsaL----aFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~ 417 (765)
+.+..||.|+|||+.+++.+..+. +|..+|.++ +|+|+|.+|++++.|| .|+|||+.. +
T Consensus 230 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg-~i~iwd~~~-------~-------- 293 (437)
T 3gre_A 230 ILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT-FLTIWNFVK-------G-------- 293 (437)
T ss_dssp EEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE-EEEEEETTT-------T--------
T ss_pred EEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCC-cEEEEEcCC-------C--------
Confidence 134568899999999999999987 888899999 5556788999999966 599999965 2
Q ss_pred cceEEEEEec-----------------------c-cccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255 418 SHVHLYKLHR-----------------------G-ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 418 s~~~l~~l~r-----------------------G-~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
..+..+.. | .+...|++++|+ ++++|++++.|++|+|||+........+..|.
T Consensus 294 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 370 (437)
T 3gre_A 294 --HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPS 370 (437)
T ss_dssp --EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred --cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence 23333321 1 133468999999 88999999999999999998766555566654
No 60
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4.8e-21 Score=207.22 Aligned_cols=250 Identities=11% Similarity=0.111 Sum_probs=179.1
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC---CCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED---ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~---~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
+.+.|..+.|.. .++.|++|..+| ++|||+.. .......+..|.++|.++++.|+. .
T Consensus 66 ~~~~v~~~~~s~-------~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------~ 126 (416)
T 2pm9_A 66 VDSKFNDLDWSH-------NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ------------D 126 (416)
T ss_dssp CSSCEEEEEECS-------SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS------------T
T ss_pred cCCceEEEEECC-------CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCC------------C
Confidence 566788888844 356788887765 99999965 134667788899999999998741 2
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe------EEEEE----eCCCCEEEEEe
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC------YEHVL----RFRSSVCMVRC 200 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~------~v~tL----~~~s~V~sV~~ 200 (765)
.+|++ ++ .+++|++||+.+++ ....+ .+...|.++++
T Consensus 127 ~~l~s-~~--------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 173 (416)
T 2pm9_A 127 NVLAS-GG--------------------------------NNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW 173 (416)
T ss_dssp TBEEE-EC--------------------------------SSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE
T ss_pred CEEEE-Ec--------------------------------CCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe
Confidence 25554 22 13689999999887 33333 24468999999
Q ss_pred cC---CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCCcccc
Q 004255 201 SP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLS 273 (765)
Q Consensus 201 s~---~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s 273 (765)
++ ++|+++. ++.|++||+.+++.+..+..+.... +.......++++| .+|+
T Consensus 174 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~--------------- 231 (416)
T 2pm9_A 174 NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS-------GIKQQLSVVEWHPKNSTRVA--------------- 231 (416)
T ss_dssp CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSS-------CCCCCEEEEEECSSCTTEEE---------------
T ss_pred CCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccc-------ccCCceEEEEECCCCCCEEE---------------
Confidence 87 4677765 4579999999998877776432100 0000122334332 1111
Q ss_pred CCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCC---e
Q 004255 274 PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG---I 350 (765)
Q Consensus 274 ~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG---~ 350 (765)
.+..+| .
T Consensus 232 ----------------------------------------------------------------------~~~~d~~~~~ 241 (416)
T 2pm9_A 232 ----------------------------------------------------------------------TATGSDNDPS 241 (416)
T ss_dssp ----------------------------------------------------------------------EEECCSSSCC
T ss_pred ----------------------------------------------------------------------EEECCCCCce
Confidence 122344 8
Q ss_pred EEEEECCCC-cEEEEec-cCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 351 VVVKDFVTR-AIISQFK-AHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 351 V~IwDl~s~-~~i~~~~-aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
|+|||+.++ +.+..+. +|..+|.+++|+| +|.+|++++.|| .|+|||+.. + ..+..+.
T Consensus 242 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg-~v~~wd~~~-------~----------~~~~~~~- 302 (416)
T 2pm9_A 242 ILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN-TVLLWNPES-------A----------EQLSQFP- 302 (416)
T ss_dssp CCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS-EEEEECSSS-------C----------CEEEEEE-
T ss_pred EEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCC-CEEEeeCCC-------C----------ccceeec-
Confidence 999999986 6777888 9999999999999 999999999966 599999865 3 4666665
Q ss_pred ccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCCCcc
Q 004255 428 GITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDSG 468 (765)
Q Consensus 428 G~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~gg~~~ 468 (765)
+ +...|.+++|+||+ ++|++++.|++|+||++........
T Consensus 303 ~-~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~ 343 (416)
T 2pm9_A 303 A-RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD 343 (416)
T ss_dssp C-SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred C-CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence 3 33569999999999 8999999999999999987665443
No 61
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1e-21 Score=212.44 Aligned_cols=262 Identities=13% Similarity=0.068 Sum_probs=171.9
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC------cceE--eeeeccCCEEEEEEecCCCCCCCCC
Q 004255 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS------NFNE--LVSKRDGPVSFLQMQPFPVKDDGCE 124 (765)
Q Consensus 54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g------~~~e--lls~~dg~V~~v~~lP~p~~~~~~d 124 (765)
.+++.|..+.|... .+++|++|..+| ++|||+.... .... .+..|.++|..+++.|+.
T Consensus 111 ~h~~~v~~~~~~~~------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------- 177 (416)
T 2pm9_A 111 NHSSSVKTVKFNAK------QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL------- 177 (416)
T ss_dssp CSSSCCCEEEECSS------STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC-------
T ss_pred CCccceEEEEEcCC------CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC-------
Confidence 35555666666431 156788887766 9999996533 1222 235678899999998741
Q ss_pred CccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-------CCCEEE
Q 004255 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-------RSSVCM 197 (765)
Q Consensus 125 ~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-------~s~V~s 197 (765)
..+|++ ++ .+++|++||+++++.+..+.. ...|.+
T Consensus 178 -----~~~l~~-~~--------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 219 (416)
T 2pm9_A 178 -----AHVFAS-AG--------------------------------SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV 219 (416)
T ss_dssp -----TTEEEE-ES--------------------------------SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred -----CcEEEE-Ec--------------------------------CCCCEEEEECCCCCcceEEeccccccccCCceEE
Confidence 235554 22 136899999999999999987 468999
Q ss_pred EEecC---CeEEEEeCC----eEEEEECCCC-ceeEEEE-ecCCcccCCCCccccccccceeEEccceEEEecCCceecC
Q 004255 198 VRCSP---RIVAVGLAT----QIYCFDALTL-ENKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSN 268 (765)
Q Consensus 198 V~~s~---~~LaV~~~~----~I~iwD~~t~-~~l~tl~-t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~ 268 (765)
+++++ .+|+++..+ .|++||+.++ +.+..+. .|..+ ...++++| .+
T Consensus 220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~-------------v~~~~~s~-------~~----- 274 (416)
T 2pm9_A 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG-------------ILSLDWCH-------QD----- 274 (416)
T ss_dssp EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC-------------EEEEEECS-------SC-----
T ss_pred EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc-------------eeEEEeCC-------CC-----
Confidence 99997 367776654 8999999986 3334333 33221 12233321 00
Q ss_pred CccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCC
Q 004255 269 SGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA 348 (765)
Q Consensus 269 ~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~d 348 (765)
+. .++.+..|
T Consensus 275 ----------------------~~------------------------------------------------~l~s~~~d 284 (416)
T 2pm9_A 275 ----------------------EH------------------------------------------------LLLSSGRD 284 (416)
T ss_dssp ----------------------SS------------------------------------------------CEEEEESS
T ss_pred ----------------------CC------------------------------------------------eEEEEeCC
Confidence 00 01234568
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE---
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK--- 424 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG-~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~--- 424 (765)
|.|+|||+.+++.+..+.+|..+|.+++|+|+| .+|++++.|| .|+|||+......................++.
T Consensus 285 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (416)
T 2pm9_A 285 NTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN-KIEVQTLQNLTNTLDEQETETKQQESETDFWNNVS 363 (416)
T ss_dssp SEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSS-EEEEEESCCCCCSSCC-------------------
T ss_pred CCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCC-cEEEEEccCCCCCcccccccccccCCccccccccc
Confidence 999999999999999999999999999999999 8999999966 59999996521100000000000000000000
Q ss_pred --------------EecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 425 --------------LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 425 --------------l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
..+. +...+.+++|||||++||+++.|++|+||++.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 364 REESKEKPSVFHLQAPTW-YGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ---CCSCCCSSCCCCCST-TCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccCCcc-ccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 0000 2335778999999999999999999999999763
No 62
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.87 E-value=4e-20 Score=196.51 Aligned_cols=239 Identities=11% Similarity=0.114 Sum_probs=173.3
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc--ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~--~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
+.+.|..+.|.. .++.|++|..+| ++|||++ .++ ....+..|.++|..+++.|+. .
T Consensus 7 ~~~~i~~~~~s~-------~~~~l~~~~~d~~v~i~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~ 65 (372)
T 1k8k_C 7 LVEPISCHAWNK-------DRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDS-------------N 65 (372)
T ss_dssp CSSCCCEEEECT-------TSSEEEEECSSSEEEEEEEE-TTEEEEEEEEECCSSCEEEEEEETTT-------------T
T ss_pred cCCCeEEEEECC-------CCCEEEEEeCCCEEEEEeCC-CCcEEeeeeecCCCCcccEEEEeCCC-------------C
Confidence 566777788864 356888886665 9999996 454 666778899999999999742 3
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe---CCCCEEEEEecC--CeEE
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSP--RIVA 206 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~---~~s~V~sV~~s~--~~La 206 (765)
+|++.+. +++|++||+.+++....+. +...|.++++++ ++|+
T Consensus 66 ~l~~~~~---------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 112 (372)
T 1k8k_C 66 RIVTCGT---------------------------------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA 112 (372)
T ss_dssp EEEEEET---------------------------------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEE
T ss_pred EEEEEcC---------------------------------CCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEE
Confidence 6655321 3589999999998776664 456899999987 6777
Q ss_pred EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCC
Q 004255 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVS 283 (765)
Q Consensus 207 V~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s 283 (765)
++. ++.|++||+.+.+....+.....+. ......++++| ++|+
T Consensus 113 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~l~------------------------- 158 (372)
T 1k8k_C 113 VGSGSRVISICYFEQENDWWVCKHIKKPI---------RSTVLSLDWHPNSVLLA------------------------- 158 (372)
T ss_dssp EEETTSSEEEEEEETTTTEEEEEEECTTC---------CSCEEEEEECTTSSEEE-------------------------
T ss_pred EEeCCCEEEEEEecCCCcceeeeeeeccc---------CCCeeEEEEcCCCCEEE-------------------------
Confidence 766 4679999998876433222111100 00112334433 2222
Q ss_pred CCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEEC-------
Q 004255 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF------- 356 (765)
Q Consensus 284 ~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl------- 356 (765)
.+..||.|+|||+
T Consensus 159 ------------------------------------------------------------~~~~dg~i~~~d~~~~~~~~ 178 (372)
T 1k8k_C 159 ------------------------------------------------------------AGSCDFKCRIFSAYIKEVEE 178 (372)
T ss_dssp ------------------------------------------------------------EEETTSCEEEEECCCTTTSC
T ss_pred ------------------------------------------------------------EEcCCCCEEEEEcccccccc
Confidence 2345677788884
Q ss_pred -----------CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255 357 -----------VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (765)
Q Consensus 357 -----------~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l 425 (765)
..++.+..+.+|..+|.+++|+|+|.+|++++.|| .|++||+.. + ..+..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~~-------~----------~~~~~~ 240 (372)
T 1k8k_C 179 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS-TVCLADADK-------K----------MAVATL 240 (372)
T ss_dssp CCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT-EEEEEEGGG-------T----------TEEEEE
T ss_pred cccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC-EEEEEECCC-------C----------ceeEEE
Confidence 46788899999999999999999999999999966 599999965 3 356666
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
. + +...|.+++|+||+++|+++ .|++|+||++..
T Consensus 241 ~-~-~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 241 A-S-ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp E-C-SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred c-c-CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 5 2 34579999999999999888 899999999986
No 63
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.87 E-value=8.8e-20 Score=201.64 Aligned_cols=231 Identities=16% Similarity=0.229 Sum_probs=174.3
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
.++.+.|..+.|| ++.|++|..+| ++|||+. .+++...+..|.++|.++++. + .
T Consensus 130 ~~~~~~v~~~~~d---------~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~-------------~--~ 184 (435)
T 1p22_A 130 SETSKGVYCLQYD---------DQKIVSGLRDNTIKIWDKN-TLECKRILTGHTGSVLCLQYD-------------E--R 184 (435)
T ss_dssp CSSCCCEEEEECC---------SSEEEEEESSSCEEEEESS-SCCEEEEECCCSSCEEEEECC-------------S--S
T ss_pred cCCCCcEEEEEEC---------CCEEEEEeCCCeEEEEeCC-CCeEEEEEcCCCCcEEEEEEC-------------C--C
Confidence 3456678887774 24677777665 9999995 577888899999999998863 1 2
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEEEe-
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL- 209 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV~~- 209 (765)
+|++.+. +++|++||+.+++.+.++..+ ..|.+++++++.|+++.
T Consensus 185 ~l~sg~~---------------------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~ 231 (435)
T 1p22_A 185 VIITGSS---------------------------------DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK 231 (435)
T ss_dssp EEEEEET---------------------------------TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEET
T ss_pred EEEEEcC---------------------------------CCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeC
Confidence 6654221 368999999999999999865 68999999998888766
Q ss_pred CCeEEEEECCCCceeE---EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255 210 ATQIYCFDALTLENKF---SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (765)
Q Consensus 210 ~~~I~iwD~~t~~~l~---tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~ 286 (765)
++.|++||+.+++... .+..|..+ ...+++..++
T Consensus 232 dg~i~vwd~~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~------------------------------ 268 (435)
T 1p22_A 232 DRSIAVWDMASPTDITLRRVLVGHRAA-------------VNVVDFDDKY------------------------------ 268 (435)
T ss_dssp TSCEEEEECSSSSCCEEEEEECCCSSC-------------EEEEEEETTE------------------------------
T ss_pred CCcEEEEeCCCCCCceeeeEecCCCCc-------------EEEEEeCCCE------------------------------
Confidence 4679999999877552 22233221 1112221111
Q ss_pred CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (765)
Q Consensus 287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~ 366 (765)
++.++.||.|+|||+.+++.+..+.
T Consensus 269 -------------------------------------------------------l~s~~~dg~i~vwd~~~~~~~~~~~ 293 (435)
T 1p22_A 269 -------------------------------------------------------IVSASGDRTIKVWNTSTCEFVRTLN 293 (435)
T ss_dssp -------------------------------------------------------EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred -------------------------------------------------------EEEEeCCCeEEEEECCcCcEEEEEc
Confidence 1234568999999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 004255 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (765)
Q Consensus 367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L 446 (765)
+|..+|.+++| ++.+|++++.||+ |+|||+.. + ..+..+. + +...|.+++| |+++|
T Consensus 294 ~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~-------~----------~~~~~~~-~-h~~~v~~~~~--~~~~l 349 (435)
T 1p22_A 294 GHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIEC-------G----------ACLRVLE-G-HEELVRCIRF--DNKRI 349 (435)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTT-------C----------CEEEEEC-C-CSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCC-------C----------CEEEEEe-C-CcCcEEEEEe--cCCEE
Confidence 99999999999 5789999999775 99999965 3 4666664 3 3457999999 88999
Q ss_pred EEEeCCCcEEEEeCCCC
Q 004255 447 AIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 447 as~S~dgTVhIwdl~~~ 463 (765)
++++.||+|+|||+...
T Consensus 350 ~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 350 VSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp EEEETTSCEEEEEHHHH
T ss_pred EEEeCCCcEEEEECCCC
Confidence 99999999999999653
No 64
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.87 E-value=1.6e-20 Score=204.08 Aligned_cols=226 Identities=10% Similarity=0.087 Sum_probs=162.4
Q ss_pred CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
++.|++|..+| +++||+. .++....+..+ ..+....+.|+ ..+||+.+.
T Consensus 68 g~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~-~~~~~~~~~~~-------------~~~l~~~~~--------------- 117 (420)
T 3vl1_A 68 GSHLYKARLDGHDFLFNTI-IRDGSKMLKRA-DYTAVDTAKLQ-------------MRRFILGTT--------------- 117 (420)
T ss_dssp ETTEEEEEETTEEEEEECC-SEETTTTSCSC-CEEEEEEECSS-------------SCEEEEEET---------------
T ss_pred CCeEEEEEcCCcEEEEEec-ccceeeEEecC-CceEEEEEecC-------------CCEEEEEEC---------------
Confidence 34566666655 9999995 34444444444 33444444442 236665221
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~-~~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t 229 (765)
+++|++||+.+++.+..+. +...|.++++++ ++|+++. ++.|++||+.+++.+.++..
T Consensus 118 ------------------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 179 (420)
T 3vl1_A 118 ------------------EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG 179 (420)
T ss_dssp ------------------TSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC
T ss_pred ------------------CCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC
Confidence 3689999999999988875 557999999987 5777765 56799999999998888877
Q ss_pred cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhc
Q 004255 230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (765)
Q Consensus 230 ~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~ 307 (765)
|..+ ...++++| ++|+
T Consensus 180 h~~~-------------v~~~~~~~~~~~l~------------------------------------------------- 197 (420)
T 3vl1_A 180 HRAT-------------VTDIAIIDRGRNVL------------------------------------------------- 197 (420)
T ss_dssp CSSC-------------EEEEEEETTTTEEE-------------------------------------------------
T ss_pred CCCc-------------EEEEEEcCCCCEEE-------------------------------------------------
Confidence 6652 23344433 1222
Q ss_pred ccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC---C---------------
Q 004255 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH---T--------------- 369 (765)
Q Consensus 308 G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH---~--------------- 369 (765)
.+..||.|+|||+.+++.+..+..| .
T Consensus 198 ------------------------------------s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 241 (420)
T 3vl1_A 198 ------------------------------------SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ 241 (420)
T ss_dssp ------------------------------------EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS
T ss_pred ------------------------------------EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce
Confidence 2345788999999998888888753 3
Q ss_pred ------CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 004255 370 ------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (765)
Q Consensus 370 ------~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg 443 (765)
.+|.+++|+|+|++|++++.||. |+|||+.. + ..+..+..+ +...|.+++|+||+
T Consensus 242 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~i~d~~~-------~----------~~~~~~~~~-~~~~v~~~~~~~~~ 302 (420)
T 3vl1_A 242 LHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVFS-------K----------EQTIQLPSK-FTCSCNSLTVDGNN 302 (420)
T ss_dssp CGGGCCCCCCTTCSSCTTEEEEEEETTSC-EEEEETTT-------C----------CEEEEECCT-TSSCEEEEEECSSC
T ss_pred eeecccCcccceEEcCCCCEEEEEcCCCe-EEEEECCC-------C----------ceeEEcccc-cCCCceeEEEeCCC
Confidence 45555666899999999999776 99999965 2 355566543 34579999999999
Q ss_pred C-EEEEEeCCCcEEEEeCCCCCC
Q 004255 444 Q-WIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 444 ~-~Las~S~dgTVhIwdl~~~gg 465 (765)
+ +|++++.||+|+|||+.....
T Consensus 303 ~~~l~~g~~dg~i~vwd~~~~~~ 325 (420)
T 3vl1_A 303 ANYIYAGYENGMLAQWDLRSPEC 325 (420)
T ss_dssp TTEEEEEETTSEEEEEETTCTTS
T ss_pred CCEEEEEeCCCeEEEEEcCCCcC
Confidence 9 999999999999999987544
No 65
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.86 E-value=1.8e-20 Score=205.13 Aligned_cols=259 Identities=10% Similarity=0.131 Sum_probs=169.8
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc----------ceEeeeecc------------CCEEEE
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN----------FNELVSKRD------------GPVSFL 111 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~----------~~ells~~d------------g~V~~v 111 (765)
+.+.|..+.|+. .++.|++|..+| ++|||++.... +...+..|. ++|..|
T Consensus 27 ~~~~V~~v~~s~-------~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 27 EADIISTVEFNH-------SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI 99 (447)
T ss_dssp GGGSEEEEEECS-------SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE
T ss_pred ccCcEEEEEECC-------CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEE
Confidence 567899999976 367899998877 99999964321 456677887 889999
Q ss_pred EEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEE-----
Q 004255 112 QMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE----- 186 (765)
Q Consensus 112 ~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v----- 186 (765)
++.|+. +..+|++.+. +++|++||+.+++..
T Consensus 100 ~~~~~~-----------~~~~l~s~s~---------------------------------d~~i~iw~~~~~~~~~~~~~ 135 (447)
T 3dw8_B 100 RWLPQK-----------NAAQFLLSTN---------------------------------DKTIKLWKISERDKRPEGYN 135 (447)
T ss_dssp EECCCC-----------SSSEEEEEEC---------------------------------SSCEEEEEEEEEEEEEECCS
T ss_pred EEcCCC-----------CcceEEEeCC---------------------------------CCeEEEEecccccCCcceec
Confidence 999752 1135655322 368999999875542
Q ss_pred ----------------------------------EEE-e-CCCCEEEEEecC--CeEEEEeCCeEEEEECCCCc-eeEEE
Q 004255 187 ----------------------------------HVL-R-FRSSVCMVRCSP--RIVAVGLATQIYCFDALTLE-NKFSV 227 (765)
Q Consensus 187 ----------------------------------~tL-~-~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~-~l~tl 227 (765)
..+ . +...|.++++++ ++|+++.++.|++||+.+.. .+..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~ 215 (447)
T 3dw8_B 136 LKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIV 215 (447)
T ss_dssp CC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEE
T ss_pred ccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeee
Confidence 122 2 346899999987 68888877789999998433 33332
Q ss_pred EecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhc
Q 004255 228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (765)
Q Consensus 228 ~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~ 307 (765)
...+.. .. .-......++++| + +..
T Consensus 216 ~~~~~~-~~-----~~~~~v~~~~~~p-------~---------------------------~~~--------------- 240 (447)
T 3dw8_B 216 DIKPAN-ME-----ELTEVITAAEFHP-------N---------------------------SCN--------------- 240 (447)
T ss_dssp ECCCSS-GG-----GCCCCEEEEEECS-------S---------------------------CTT---------------
T ss_pred eccccc-cc-----ccCcceEEEEECC-------C---------------------------CCc---------------
Confidence 211110 00 0000011122211 0 000
Q ss_pred ccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE----EEEeccCCC------------C
Q 004255 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI----ISQFKAHTS------------P 371 (765)
Q Consensus 308 G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~----i~~~~aH~~------------~ 371 (765)
.++.+..||.|+|||+.+++. +..+.+|.. +
T Consensus 241 ---------------------------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (447)
T 3dw8_B 241 ---------------------------------TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISS 287 (447)
T ss_dssp ---------------------------------EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTC
T ss_pred ---------------------------------EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCce
Confidence 122455789999999999886 788988886 9
Q ss_pred eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-----------c---cEEEE
Q 004255 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----------A---TIQDI 437 (765)
Q Consensus 372 IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~-----------a---~I~sl 437 (765)
|.+++|+|+|++|++++. | .|+|||+... + ..+..+. ++.. . .+.++
T Consensus 288 v~~~~~s~~g~~l~~~~~-~-~v~iwd~~~~------~----------~~~~~~~-~~~~~~~~l~~~~~~~~i~~~~~~ 348 (447)
T 3dw8_B 288 ISDVKFSHSGRYMMTRDY-L-SVKVWDLNME------N----------RPVETYQ-VHEYLRSKLCSLYENDCIFDKFEC 348 (447)
T ss_dssp EEEEEECTTSSEEEEEES-S-EEEEEETTCC------S----------SCSCCEE-SCGGGTTTHHHHHHTSGGGCCCCE
T ss_pred EEEEEECCCCCEEEEeeC-C-eEEEEeCCCC------c----------cccceee-ccccccccccccccccccccceEE
Confidence 999999999999999998 5 5999999641 1 1222332 2111 0 13459
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccc
Q 004255 438 CFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (765)
Q Consensus 438 aFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h 472 (765)
+|+||+++|++++.||+|+|||+... ....+..|
T Consensus 349 ~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~ 382 (447)
T 3dw8_B 349 CWNGSDSVVMTGSYNNFFRMFDRNTK-RDITLEAS 382 (447)
T ss_dssp EECTTSSEEEEECSTTEEEEEETTTC-CEEEEECC
T ss_pred EECCCCCEEEEeccCCEEEEEEcCCC-cceeeeec
Confidence 99999999999999999999999873 33344444
No 66
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.86 E-value=8.6e-20 Score=194.07 Aligned_cols=207 Identities=11% Similarity=0.049 Sum_probs=155.0
Q ss_pred ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 004255 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (765)
Q Consensus 97 ~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~ 176 (765)
+...|.+|.++|..|++.|. ...+|+..+ .+++|+
T Consensus 9 l~~~l~gH~~~V~~l~~~~~------------~~~~l~s~s---------------------------------~D~~v~ 43 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAG------------QPNLLLSAS---------------------------------RDKTLI 43 (319)
T ss_dssp EEEEECCCSSCEEEEEECSS------------CTTEEEEEE---------------------------------TTSEEE
T ss_pred EEEEEccccceEEEEEccCC------------CccEEEEec---------------------------------CCccEE
Confidence 34567899999999999863 113665422 137999
Q ss_pred EEECCC-----CeEEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 004255 177 FYSFQS-----HCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (765)
Q Consensus 177 lWdlkt-----g~~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (765)
+||+.+ +..+.+++.+ ..|.++++++ ++|+++. ++.|++||+.+++++.++..|..+ .
T Consensus 44 ~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~-------------v 110 (319)
T 3frx_A 44 SWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD-------------V 110 (319)
T ss_dssp EEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-------------E
T ss_pred EecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc-------------E
Confidence 999864 4457777755 5899999987 5777655 668999999999998888877652 2
Q ss_pred ceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (765)
Q Consensus 248 ~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~ 327 (765)
..++++| +. .
T Consensus 111 ~~~~~~~-------~~---------------------------~------------------------------------ 120 (319)
T 3frx_A 111 MSVDIDK-------KA---------------------------S------------------------------------ 120 (319)
T ss_dssp EEEEECT-------TS---------------------------C------------------------------------
T ss_pred EEEEEcC-------CC---------------------------C------------------------------------
Confidence 2333322 10 0
Q ss_pred CccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCC------CCEEEEEEcCCCEEEEEeCCC
Q 004255 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS------GTLLVTASVYGNNINIFRIMP 401 (765)
Q Consensus 328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpd------G~lLATaS~dGt~IrVWdi~~ 401 (765)
.+++++.||+|+|||+. ++.+..+.+|...|.+++|+|. +.+|++++.|++ |++||+..
T Consensus 121 -------------~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~-i~~wd~~~ 185 (319)
T 3frx_A 121 -------------MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM-VKAWNLNQ 185 (319)
T ss_dssp -------------EEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSC-EEEEETTT
T ss_pred -------------EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCE-EEEEECCc
Confidence 01234568999999996 5678889999999999999994 558999999765 99999964
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 402 ~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
+ .....+. | +...|.+++|+|||++|++++.||+|+|||+.....
T Consensus 186 -------~----------~~~~~~~-~-h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 186 -------F----------QIEADFI-G-HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230 (319)
T ss_dssp -------T----------EEEEEEC-C-CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred -------c----------hhheeec-C-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 2 3444553 4 345799999999999999999999999999986543
No 67
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.86 E-value=4.2e-20 Score=204.21 Aligned_cols=241 Identities=14% Similarity=0.152 Sum_probs=174.0
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
.++.+.|..+.|| ++.|++|..+| ++|||+. .+++...+..|.+.|.++.+.+ .
T Consensus 170 ~~h~~~v~~l~~~---------~~~l~sg~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~l~~~~-------------~-- 224 (435)
T 1p22_A 170 TGHTGSVLCLQYD---------ERVIITGSSDSTVRVWDVN-TGEMLNTLIHHCEAVLHLRFNN-------------G-- 224 (435)
T ss_dssp CCCSSCEEEEECC---------SSEEEEEETTSCEEEEESS-SCCEEEEECCCCSCEEEEECCT-------------T--
T ss_pred cCCCCcEEEEEEC---------CCEEEEEcCCCeEEEEECC-CCcEEEEEcCCCCcEEEEEEcC-------------C--
Confidence 3466677766662 35788888776 9999995 5778888888999999998753 2
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEE---EEEeC-CCCEEEEEecCCeEEE
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE---HVLRF-RSSVCMVRCSPRIVAV 207 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v---~tL~~-~s~V~sV~~s~~~LaV 207 (765)
+|++.+. +++|++||+.+++.+ ..+.. ...|.++.+++++|++
T Consensus 225 ~l~s~s~---------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 271 (435)
T 1p22_A 225 MMVTCSK---------------------------------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVS 271 (435)
T ss_dssp EEEEEET---------------------------------TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEE
T ss_pred EEEEeeC---------------------------------CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEE
Confidence 5554221 368999999988765 44443 4689999999988888
Q ss_pred Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (765)
Q Consensus 208 ~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~ 286 (765)
+. ++.|++||+.+++.+.++..|..+ ...+++..++|+
T Consensus 272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~---------------------------- 310 (435)
T 1p22_A 272 ASGDRTIKVWNTSTCEFVRTLNGHKRG-------------IACLQYRDRLVV---------------------------- 310 (435)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEEETTEEE----------------------------
T ss_pred EeCCCeEEEEECCcCcEEEEEcCCCCc-------------EEEEEeCCCEEE----------------------------
Confidence 76 567999999999998888766542 112222111111
Q ss_pred CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (765)
Q Consensus 287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~ 366 (765)
.++.||.|+|||+.+++.+..+.
T Consensus 311 ---------------------------------------------------------~g~~dg~i~iwd~~~~~~~~~~~ 333 (435)
T 1p22_A 311 ---------------------------------------------------------SGSSDNTIRLWDIECGACLRVLE 333 (435)
T ss_dssp ---------------------------------------------------------EEETTSCEEEEETTTCCEEEEEC
T ss_pred ---------------------------------------------------------EEeCCCeEEEEECCCCCEEEEEe
Confidence 23468899999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 004255 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (765)
Q Consensus 367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L 446 (765)
+|..+|.+++| +|.+|++++.||. |+|||+...... . .......+..+. + +...|.+++| |+++|
T Consensus 334 ~h~~~v~~~~~--~~~~l~sg~~dg~-i~vwd~~~~~~~---~-----~~~~~~~~~~~~-~-h~~~v~~l~~--~~~~l 398 (435)
T 1p22_A 334 GHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLVAALDP---R-----APAGTLCLRTLV-E-HSGRVFRLQF--DEFQI 398 (435)
T ss_dssp CCSSCEEEEEC--CSSEEEEEETTSC-EEEEEHHHHTST---T-----SCTTTTEEEEEC-C-CSSCCCCEEE--CSSCE
T ss_pred CCcCcEEEEEe--cCCEEEEEeCCCc-EEEEECCCCCCc---c-----ccccchheeecc-C-CCCCeEEEEe--CCCEE
Confidence 99999999999 7899999999775 999998541100 0 000012455553 3 3457999999 88999
Q ss_pred EEEeCCCcEEEEeCCCCC
Q 004255 447 AIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 447 as~S~dgTVhIwdl~~~g 464 (765)
++++.||+|+|||+....
T Consensus 399 ~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 399 VSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EECCSSSEEEEEC-----
T ss_pred EEEeCCCEEEEEECCCCC
Confidence 999999999999998643
No 68
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.3e-19 Score=195.08 Aligned_cols=288 Identities=11% Similarity=0.075 Sum_probs=181.8
Q ss_pred CcEEEEEEeeccCCCCCCCe-EEEEEecCc-EEEEEc----cCCCc------ceEeeee----------ccCCEEEEEEe
Q 004255 57 DQVTWAGFDRLEYGPSVFKQ-VLLLGYQNG-FQVLDV----EDASN------FNELVSK----------RDGPVSFLQMQ 114 (765)
Q Consensus 57 ~~v~w~~fd~l~~~~~~~~~-vL~~G~~~G-~qVWdv----~~~g~------~~ells~----------~dg~V~~v~~l 114 (765)
+.|..+.|.. .++ +|++|..+| ++|||+ .. ++ ....+.. |.++|.++++.
T Consensus 46 ~~v~~~~~s~-------~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 46 DNIVSSTWNP-------LDESILAYGEKNSVARLARIVETDQE-GKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp SCCSEEEECS-------SCTTEEEEEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred CceEEEEECC-------CCCcEEEEecCCceEEEEEEecccCC-ccccccccccccccccccccccccCCCCceEEEEEc
Confidence 4455555543 345 888888766 999999 54 43 2333333 57799999999
Q ss_pred cCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CC
Q 004255 115 PFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RS 193 (765)
Q Consensus 115 P~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s 193 (765)
|+ ..+|++.+. +++|++|| .+++.+..+.. ..
T Consensus 118 ~~-------------~~~l~~~~~---------------------------------dg~i~i~~-~~~~~~~~~~~~~~ 150 (425)
T 1r5m_A 118 HD-------------GNSIVTGVE---------------------------------NGELRLWN-KTGALLNVLNFHRA 150 (425)
T ss_dssp TT-------------SSEEEEEET---------------------------------TSCEEEEE-TTSCEEEEECCCCS
T ss_pred CC-------------CCEEEEEeC---------------------------------CCeEEEEe-CCCCeeeeccCCCc
Confidence 74 236665321 25899999 68888888875 46
Q ss_pred CEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccC-C-CCccccccccceeEEcc-ceEEEecCCceec
Q 004255 194 SVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLA-G-QGAVGINVGYGPMAVGP-RWLAYASNTLLLS 267 (765)
Q Consensus 194 ~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~-~-~~~~~~~~~~~~~Alsp-r~LAyas~~~~~~ 267 (765)
.|.++++++ ++|+++. ++.|++||+.+++.+..+..+..+... . ............+++++ ..++.++.+..+
T Consensus 151 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i- 229 (425)
T 1r5m_A 151 PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAI- 229 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCE-
T ss_pred cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeE-
Confidence 899999987 5666654 568999999999988877654332000 0 00000000023355555 344444433110
Q ss_pred CCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCC
Q 004255 268 NSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDN 347 (765)
Q Consensus 268 ~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~ 347 (765)
..|+..+.. .+ +++..+. .....+.++++.+ .++.+..
T Consensus 230 ----~~~d~~~~~------------~~----------------~~~~~~~------~~i~~~~~~~~~~----~l~~~~~ 267 (425)
T 1r5m_A 230 ----FVYQITEKT------------PT----------------GKLIGHH------GPISVLEFNDTNK----LLLSASD 267 (425)
T ss_dssp ----EEEETTCSS------------CS----------------EEECCCS------SCEEEEEEETTTT----EEEEEET
T ss_pred ----EEEEcCCCc------------ee----------------eeeccCC------CceEEEEECCCCC----EEEEEcC
Confidence 112211100 00 0111000 0001111222222 2346678
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
+|.|+|||+.+++.+..+.+|..+|.+++|+|+| +|++++.+| .|+|||+.. + ..+..+.
T Consensus 268 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~-~i~i~d~~~-------~----------~~~~~~~- 327 (425)
T 1r5m_A 268 DGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDG-SVRLWSLKQ-------N----------TLLALSI- 327 (425)
T ss_dssp TSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTS-EEEEEETTT-------T----------EEEEEEE-
T ss_pred CCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCC-cEEEEECCC-------C----------cEeEecc-
Confidence 9999999999999999999999999999999999 999999966 599999964 2 4555554
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
+ +...|.+++|+||+++|++++.||+|+||++...
T Consensus 328 ~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 328 V-DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp C-TTCCEEEEEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred c-CCccEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 2 3357999999999999999999999999999753
No 69
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.86 E-value=4e-19 Score=196.36 Aligned_cols=259 Identities=14% Similarity=0.128 Sum_probs=187.0
Q ss_pred eEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCC
Q 004255 76 QVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (765)
Q Consensus 76 ~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~ 154 (765)
+.|++|..+| ++|||+. .+++...+..|.++|.++++.+ .+|++.+.
T Consensus 130 ~~l~sg~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~---------------~~l~s~~~---------------- 177 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSAV-TGKCLRTLVGHTGGVWSSQMRD---------------NIIISGST---------------- 177 (445)
T ss_dssp TEEEEEETTSCEEEEETT-TCCEEEECCCCSSCEEEEEEET---------------TEEEEEET----------------
T ss_pred CEEEEEECCCcEEEEECC-CCcEEEEEcCCCCCEEEEEecC---------------CEEEEEeC----------------
Confidence 4677777776 9999995 5778888899999999998763 25654221
Q ss_pred CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEecCC
Q 004255 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPV 232 (765)
Q Consensus 155 ~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~ 232 (765)
+++|++||+.+++.+.++..+ ..|.++.++++.|+++. ++.|++||+.+++.+.++..|..
T Consensus 178 -----------------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 240 (445)
T 2ovr_B 178 -----------------DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA 240 (445)
T ss_dssp -----------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSS
T ss_pred -----------------CCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc
Confidence 368999999999999999854 68999999998888766 56899999999999998887665
Q ss_pred cccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccccee
Q 004255 233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 312 (765)
Q Consensus 233 p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~kt 312 (765)
+ ...+++..++|+.++.+..+ ..|+..+. .. .++
T Consensus 241 ~-------------v~~~~~~~~~l~~~~~dg~i-----~iwd~~~~------------~~----------------~~~ 274 (445)
T 2ovr_B 241 A-------------VRCVQYDGRRVVSGAYDFMV-----KVWDPETE------------TC----------------LHT 274 (445)
T ss_dssp C-------------EEEEEECSSCEEEEETTSCE-----EEEEGGGT------------EE----------------EEE
T ss_pred c-------------EEEEEECCCEEEEEcCCCEE-----EEEECCCC------------cE----------------eEE
Confidence 2 34566666888887765311 12221110 00 011
Q ss_pred ecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 004255 313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN 392 (765)
Q Consensus 313 ls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt 392 (765)
+.++.. ....+.+ .+..++.+..||.|++||+.+++.+..+.+|...+.+++++ +.+|++++.||.
T Consensus 275 ~~~~~~------~v~~~~~------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~ 340 (445)
T 2ovr_B 275 LQGHTN------RVYSLQF------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADST 340 (445)
T ss_dssp ECCCSS------CEEEEEE------CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSC
T ss_pred ecCCCC------ceEEEEE------CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCe
Confidence 111110 0001111 11124567789999999999999999999999999998884 679999999775
Q ss_pred EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc-cccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG-ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 393 ~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG-~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
|+|||+.. + ..+..+... .+...|.+++|+ +++|++++.||+|+|||+...
T Consensus 341 -i~vwd~~~-------~----------~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 341 -VKIWDIKT-------G----------QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp -EEEEETTT-------C----------CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred -EEEEECCC-------C----------cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCC
Confidence 99999965 3 456666421 134579999995 689999999999999999763
No 70
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3e-20 Score=213.59 Aligned_cols=262 Identities=13% Similarity=0.079 Sum_probs=170.0
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc----------ceEeeeeccCCEEEEEEecCCCCCCCCC
Q 004255 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN----------FNELVSKRDGPVSFLQMQPFPVKDDGCE 124 (765)
Q Consensus 56 ~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~----------~~ells~~dg~V~~v~~lP~p~~~~~~d 124 (765)
.+.|..+.|..-. .....+.+|++|..+| ++|||+..... ....+..|.++|.++.+.|.
T Consensus 207 ~~~V~~v~wsp~~-~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-------- 277 (524)
T 2j04_B 207 FGEVWDLKWHEGC-HAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-------- 277 (524)
T ss_dssp CCSEEEEEECSSC-CCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--------
T ss_pred CCcEEEEEECCCC-CCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--------
Confidence 4556667775410 0112256888888776 99999954221 11356778899999999752
Q ss_pred CccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe-EEEEEeCC-CCEEEE--Ee
Q 004255 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC-YEHVLRFR-SSVCMV--RC 200 (765)
Q Consensus 125 ~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~-~v~tL~~~-s~V~sV--~~ 200 (765)
. +||+.+ .+++|++||+++++ ....+..+ ..|.+| .+
T Consensus 278 ----~--~lasgs---------------------------------~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~ 318 (524)
T 2j04_B 278 ----T--TVVCGF---------------------------------KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAY 318 (524)
T ss_dssp ----S--EEEEEE---------------------------------TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEEC
T ss_pred ----C--eEEEEe---------------------------------CCCEEEEEECCCCCCceEEeecccccEEEEEEEc
Confidence 1 555422 13699999999874 44566654 689999 45
Q ss_pred cC---CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCC
Q 004255 201 SP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQN 276 (765)
Q Consensus 201 s~---~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~ 276 (765)
++ ++||++. +++|+|||+.+++++.++.+|... . ....++++| +.
T Consensus 319 s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~---------~--~v~~v~fsp-------~~------------- 367 (524)
T 2j04_B 319 SDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG---------S--NLVPVVYCP-------QI------------- 367 (524)
T ss_dssp CTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC---------C--SCCCEEEET-------TT-------------
T ss_pred CCCCCeEEEEeccCCeEEEEECCCCCccccccccccc---------C--cccceEeCC-------Cc-------------
Confidence 65 5777755 568999999998887777654320 0 012334433 10
Q ss_pred CCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEEC
Q 004255 277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 356 (765)
Q Consensus 277 lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl 356 (765)
. .++.++.|++|+|||+
T Consensus 368 --------------~-------------------------------------------------~l~s~~~d~tv~lwd~ 384 (524)
T 2j04_B 368 --------------Y-------------------------------------------------SYIYSDGASSLRAVPS 384 (524)
T ss_dssp --------------T-------------------------------------------------EEEEECSSSEEEEEET
T ss_pred --------------C-------------------------------------------------eEEEeCCCCcEEEEEC
Confidence 0 0112345779999999
Q ss_pred CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCC---------ccccCC----------
Q 004255 357 VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH---------KYDWNS---------- 417 (765)
Q Consensus 357 ~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~---------~~~~~~---------- 417 (765)
.++.++.+|.+|.++|++|+|||+|++||+||.|| +|+|||+.........+.. ...++.
T Consensus 385 ~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg-tv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~ 463 (524)
T 2j04_B 385 RAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADG-SLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSS 463 (524)
T ss_dssp TCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTT-EEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCC
T ss_pred cccccceeeecCCCceEEEEeCCCCCeEEEEECCC-EEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCC
Confidence 99998889999999999999999999999999966 5999997542111100000 000111
Q ss_pred --------cceEEEEEecccccccEEEEEEccCC---CEEEEEeCCCcEEEEeCCC
Q 004255 418 --------SHVHLYKLHRGITSATIQDICFSHYS---QWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 418 --------s~~~l~~l~rG~~~a~I~slaFSpDg---~~Las~S~dgTVhIwdl~~ 462 (765)
....+..+. |+ ...|++|+||||+ .+||+|+.||+|+||++.-
T Consensus 464 ~~~~~~~~~g~~~~~l~-gh-~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 464 YEVYPLTVNDVSKAKID-AH-GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCCC--------------C-CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ceecccccCCcceeeec-CC-CceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 112233332 32 3569999999996 4999999999999999864
No 71
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.86 E-value=4.2e-19 Score=196.45 Aligned_cols=238 Identities=13% Similarity=0.142 Sum_probs=176.7
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
.++++.|..+.|.. + + .|++|..+| ++|||++ .+++...+..|.++|.++++.|.| ...
T Consensus 159 ~~h~~~V~~l~~~~----~---~-~l~s~s~dg~i~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~~-----------~~~ 218 (464)
T 3v7d_B 159 SGHDGGVWALKYAH----G---G-ILVSGSTDRTVRVWDIK-KGCCTHVFEGHNSTVRCLDIVEYK-----------NIK 218 (464)
T ss_dssp CCCSSCEEEEEECS----T---T-EEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEEEESS-----------SCE
T ss_pred eCCCcCEEEEEEcC----C---C-EEEEEeCCCCEEEEECC-CCcEEEEECCCCCccEEEEEecCC-----------CCC
Confidence 35677777777743 1 2 677777766 9999995 577888888999999999999643 223
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-----------------------EEE
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----------------------EHV 188 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~-----------------------v~t 188 (765)
+|++.+. +++|++||+.+++. +..
T Consensus 219 ~l~s~s~---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 219 YIVTGSR---------------------------------DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp EEEEEET---------------------------------TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred EEEEEcC---------------------------------CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 5654221 36899999998763 444
Q ss_pred EeC-CCCEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCcee
Q 004255 189 LRF-RSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLL 266 (765)
Q Consensus 189 L~~-~s~V~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~ 266 (765)
+.. ...|.++..+.++|+++. ++.|++||+.+++++.++..|..+ ...++++| +..
T Consensus 266 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------------v~~~~~~~-------~~~-- 323 (464)
T 3v7d_B 266 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR-------------IYSTIYDH-------ERK-- 323 (464)
T ss_dssp ECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEEET-------TTT--
T ss_pred ccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC-------------EEEEEEcC-------CCC--
Confidence 543 358899988888888876 567999999999988887765542 12333322 100
Q ss_pred cCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccC
Q 004255 267 SNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD 346 (765)
Q Consensus 267 ~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~ 346 (765)
.++.+.
T Consensus 324 --------------------------------------------------------------------------~l~sg~ 329 (464)
T 3v7d_B 324 --------------------------------------------------------------------------RCISAS 329 (464)
T ss_dssp --------------------------------------------------------------------------EEEEEE
T ss_pred --------------------------------------------------------------------------EEEEEe
Confidence 011345
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
.||.|+|||+.+++.+..+.+|..+|.+++|+ +.+|++++.|| .|+|||+.. + ...+.+.
T Consensus 330 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg-~v~vwd~~~-------~----------~~~~~~~ 389 (464)
T 3v7d_B 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADG-SIRGWDAND-------Y----------SRKFSYH 389 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTS-EEEEEETTT-------C----------CEEEEEE
T ss_pred CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCC-cEEEEECCC-------C----------ceeeeec
Confidence 68899999999999999999999999999998 58999999966 599999964 2 3444443
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
+...+..++|++|+++|++++ ||+|+|||+...
T Consensus 390 ---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 390 ---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp ---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred ---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 234577889999999999999 899999999863
No 72
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.86 E-value=7.3e-21 Score=218.68 Aligned_cols=233 Identities=12% Similarity=0.074 Sum_probs=157.8
Q ss_pred eEEEEEecCc-EEEEEccCCCcce----EeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCc
Q 004255 76 QVLLLGYQNG-FQVLDVEDASNFN----ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR 150 (765)
Q Consensus 76 ~vL~~G~~~G-~qVWdv~~~g~~~----ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~ 150 (765)
+.|+.|..+| ++|||++. +++. ..+..|.+.|..|++.|... +.....+||.++.
T Consensus 174 ~~laS~s~D~tI~iWd~~~-~~~~~~~~~~l~~~~~~V~~v~wsp~~~-------~~~~~~~LAs~s~------------ 233 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNT-STLHCVKVQTIVHSFGEVWDLKWHEGCH-------APHLVGCLSFVSQ------------ 233 (524)
T ss_dssp --------CEEEEEEEEET-TTCCEEEEEEEEECCCSEEEEEECSSCC-------CSSSSCEEEEEET------------
T ss_pred hhhccCCCCceEEEEEccC-CCCCceEEEEEEecCCcEEEEEECCCCC-------CCCCCceEEEEec------------
Confidence 3445455555 99999964 4432 34567778999999998631 1122347776432
Q ss_pred CCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-----------EEEEeCC-CCEEEEEecC-CeEEEEe-CCeEEEE
Q 004255 151 SHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----------EHVLRFR-SSVCMVRCSP-RIVAVGL-ATQIYCF 216 (765)
Q Consensus 151 ~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~-----------v~tL~~~-s~V~sV~~s~-~~LaV~~-~~~I~iw 216 (765)
+++|+|||+.+++. ..++..+ ..|.+|++++ ..|++|. ++.|++|
T Consensus 234 ---------------------DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lW 292 (524)
T 2j04_B 234 ---------------------EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEF 292 (524)
T ss_dssp ---------------------TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEE
T ss_pred ---------------------CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEE
Confidence 36899999987642 2355544 6899999976 6777765 5689999
Q ss_pred ECCCCce-eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCccee
Q 004255 217 DALTLEN-KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVA 295 (765)
Q Consensus 217 D~~t~~~-l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva 295 (765)
|+.+++. ..++..|..+ ...+++ +++.+. ..
T Consensus 293 D~~~~~~~~~~~~~H~~~-------------V~sv~~-----~~s~~g---------------------------~~--- 324 (524)
T 2j04_B 293 DLTDPEVPSFYDQVHDSY-------------ILSVST-----AYSDFE---------------------------DT--- 324 (524)
T ss_dssp ETTBCSSCSEEEECSSSC-------------EEEEEE-----ECCTTS---------------------------CC---
T ss_pred ECCCCCCceEEeeccccc-------------EEEEEE-----EcCCCC---------------------------Ce---
Confidence 9997743 3445555542 111210 111100 00
Q ss_pred eehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCC--CeE
Q 004255 296 RYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTS--PIS 373 (765)
Q Consensus 296 ~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~--~Is 373 (765)
.+++++.||+|+|||+.+++++..+.+|.. .|.
T Consensus 325 ---------------------------------------------~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~ 359 (524)
T 2j04_B 325 ---------------------------------------------VVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV 359 (524)
T ss_dssp ---------------------------------------------EEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred ---------------------------------------------EEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence 123456799999999999888878888864 588
Q ss_pred EEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 004255 374 ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453 (765)
Q Consensus 374 aLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dg 453 (765)
+++|+|+|..||+++.|+ +|+|||++. + .++..+. | +...|++|+|||||++||+|+.||
T Consensus 360 ~v~fsp~~~~l~s~~~d~-tv~lwd~~~-------~----------~~~~~l~-g-H~~~V~sva~Sp~g~~l~Sgs~Dg 419 (524)
T 2j04_B 360 PVVYCPQIYSYIYSDGAS-SLRAVPSRA-------A----------FAVHPLV-S-RETTITAIGVSRLHPMVLAGSADG 419 (524)
T ss_dssp CEEEETTTTEEEEECSSS-EEEEEETTC-------T----------TCCEEEE-E-CSSCEEEEECCSSCCBCEEEETTT
T ss_pred ceEeCCCcCeEEEeCCCC-cEEEEECcc-------c----------ccceeee-c-CCCceEEEEeCCCCCeEEEEECCC
Confidence 999999999999999855 699999865 2 2334454 4 346799999999999999999999
Q ss_pred cEEEEeCCC
Q 004255 454 TCHVFVLSP 462 (765)
Q Consensus 454 TVhIwdl~~ 462 (765)
+|+||++..
T Consensus 420 tv~lwd~~~ 428 (524)
T 2j04_B 420 SLIITNAAR 428 (524)
T ss_dssp EEECCBSCS
T ss_pred EEEEEechH
Confidence 999999753
No 73
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.86 E-value=3.4e-21 Score=206.65 Aligned_cols=237 Identities=14% Similarity=0.107 Sum_probs=155.1
Q ss_pred CcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEE
Q 004255 57 DQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL 134 (765)
Q Consensus 57 ~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g-~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLa 134 (765)
+.|..+.|.. .++.|++|..+| ++|||+.... .+...+..|.++|.++++.|+. .+|+
T Consensus 12 ~~v~~~~~s~-------~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-------------~~l~ 71 (377)
T 3dwl_C 12 KPSYEHAFNS-------QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-------------NRIV 71 (377)
T ss_dssp SCCSCCEECS-------SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-------------CCEE
T ss_pred CcEEEEEECC-------CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-------------CEEE
Confidence 3455555543 366888886665 9999996432 5667788899999999999752 2565
Q ss_pred EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe---EEEEEe-CCCCEEEEEecC--CeEEEE
Q 004255 135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC---YEHVLR-FRSSVCMVRCSP--RIVAVG 208 (765)
Q Consensus 135 vv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~---~v~tL~-~~s~V~sV~~s~--~~LaV~ 208 (765)
+.+. +++|++||+.+++ .+..+. +...|.++++++ ++|+++
T Consensus 72 s~s~---------------------------------d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 118 (377)
T 3dwl_C 72 TCSQ---------------------------------DRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVG 118 (377)
T ss_dssp EEET---------------------------------TSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEE
T ss_pred EEeC---------------------------------CCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEE
Confidence 5321 3689999999987 444443 457999999987 566665
Q ss_pred e-CCeEEEEECCCCce---eEEEEe-cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCC
Q 004255 209 L-ATQIYCFDALTLEN---KFSVLT-YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSG 281 (765)
Q Consensus 209 ~-~~~I~iwD~~t~~~---l~tl~t-~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~ 281 (765)
. ++.|++||+.+.+. ...+.. |..+ ...++++| ++||++
T Consensus 119 ~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~-------------v~~~~~~~~~~~l~~~--------------------- 164 (377)
T 3dwl_C 119 SGARVISVCYFEQENDWWVSKHLKRPLRST-------------ILSLDWHPNNVLLAAG--------------------- 164 (377)
T ss_dssp ESSSCEEECCC-----CCCCEEECSSCCSC-------------EEEEEECTTSSEEEEE---------------------
T ss_pred ecCCeEEEEEECCcccceeeeEeecccCCC-------------eEEEEEcCCCCEEEEE---------------------
Confidence 5 56799999998763 455544 3331 23445544 233333
Q ss_pred CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC----
Q 004255 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV---- 357 (765)
Q Consensus 282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~---- 357 (765)
..||.|+|||+.
T Consensus 165 ----------------------------------------------------------------~~d~~i~iwd~~~~~~ 180 (377)
T 3dwl_C 165 ----------------------------------------------------------------CADRKAYVLSAYVRDV 180 (377)
T ss_dssp ----------------------------------------------------------------ESSSCEEEEEECCSSC
T ss_pred ----------------------------------------------------------------eCCCEEEEEEEEeccc
Confidence 345667777763
Q ss_pred --------------CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 358 --------------TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 358 --------------s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
.++++..+ +|..+|.+++|+|+|++||+++.|| .|+|||+.. +. .....+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~-~i~iwd~~~-------~~------~~~~~~~ 245 (377)
T 3dwl_C 181 DAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS-SVTIAYPSA-------PE------QPPRALI 245 (377)
T ss_dssp C-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTT-EEC-CEECS-------TT------SCEEECC
T ss_pred CCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC-cEEEEECCC-------CC------CcceeeE
Confidence 35567777 9999999999999999999999966 599999965 21 0001133
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
.+. + +...|.+++|+|||++|++++.++.+ +|+...
T Consensus 246 ~~~-~-~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 246 TVK-L-SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp CEE-C-SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred eec-C-CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 443 3 34569999999999999999877766 887764
No 74
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.2e-19 Score=186.55 Aligned_cols=242 Identities=12% Similarity=0.194 Sum_probs=173.9
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
..+.+.|..+.|.. .++.|++|..+| ++|||+. .+++...+. +.++|..+.+.|+ ..
T Consensus 71 ~~h~~~v~~~~~~~-------~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~-~~~~v~~~~~~~~-------------~~ 128 (369)
T 3zwl_B 71 DGHTGTIWSIDVDC-------FTKYCVTGSADYSIKLWDVS-NGQCVATWK-SPVPVKRVEFSPC-------------GN 128 (369)
T ss_dssp CCCSSCEEEEEECT-------TSSEEEEEETTTEEEEEETT-TCCEEEEEE-CSSCEEEEEECTT-------------SS
T ss_pred hhcCCcEEEEEEcC-------CCCEEEEEeCCCeEEEEECC-CCcEEEEee-cCCCeEEEEEccC-------------CC
Confidence 34666777777754 255777777766 9999995 466666666 7789999999874 23
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-----------EEEEeC-CC--CEEE
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----------EHVLRF-RS--SVCM 197 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~-----------v~tL~~-~s--~V~s 197 (765)
+|++...+ . ...++.|++||+.++.. +..+.. .. .|.+
T Consensus 129 ~l~~~~~~-~---------------------------~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 129 YFLAILDN-V---------------------------MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp EEEEEECC-B---------------------------TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred EEEEecCC-c---------------------------cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 66553321 0 00136899999976642 223322 22 8999
Q ss_pred EEecC--CeEEEEe-CCeEEEEECCC-CceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCcc
Q 004255 198 VRCSP--RIVAVGL-ATQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGR 271 (765)
Q Consensus 198 V~~s~--~~LaV~~-~~~I~iwD~~t-~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~ 271 (765)
+++++ ++|+++. ++.|++||+.+ .+....+..+..+ ...++++| ++|
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~l-------------- 233 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS-------------ISDMQFSPDLTYF-------------- 233 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC-------------EEEEEECTTSSEE--------------
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc-------------eeEEEECCCCCEE--------------
Confidence 99987 5777765 56799999998 6666666655431 22344432 111
Q ss_pred ccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeE
Q 004255 272 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351 (765)
Q Consensus 272 ~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V 351 (765)
+.+..||.|
T Consensus 234 -----------------------------------------------------------------------~~~~~d~~i 242 (369)
T 3zwl_B 234 -----------------------------------------------------------------------ITSSRDTNS 242 (369)
T ss_dssp -----------------------------------------------------------------------EEEETTSEE
T ss_pred -----------------------------------------------------------------------EEecCCceE
Confidence 123467899
Q ss_pred EEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC-------------EEEEEeCCCCcccCCCCCCccccCCc
Q 004255 352 VVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN-------------NINIFRIMPSCMRSGSGNHKYDWNSS 418 (765)
Q Consensus 352 ~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt-------------~IrVWdi~~~~~~~~sG~~~~~~~~s 418 (765)
+|||+.+++.+..+. |..++.+++|+|+|.+|++++.++. .|++||+.. +
T Consensus 243 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-------~--------- 305 (369)
T 3zwl_B 243 FLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-------E--------- 305 (369)
T ss_dssp EEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT-------C---------
T ss_pred EEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-------C---------
Confidence 999999999988887 7789999999999999999998663 699999865 2
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 419 ~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
..+..+. ++ ...|.+++|+||+++|++++.||+|+||+++.
T Consensus 306 -~~~~~~~-~~-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 306 -EEIGRVQ-GH-FGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp -CEEEEEE-CC-SSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred -cchhhee-cc-cCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 3555654 33 45799999999999999999999999999975
No 75
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.86 E-value=2.4e-19 Score=211.93 Aligned_cols=252 Identities=13% Similarity=0.075 Sum_probs=189.8
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
..++.+.|..+.|.. +++.|++|..+| ++|||+. .+.....+..|.++|.++++.|+ .
T Consensus 9 ~~~h~~~v~~i~~sp-------~~~~la~~~~~g~v~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~-------------~ 67 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHP-------TEPWVLTTLYSGRVEIWNYE-TQVEVRSIQVTETPVRAGKFIAR-------------K 67 (814)
T ss_dssp EEEECSCEEEEEECS-------SSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEEEGG-------------G
T ss_pred eecCCCceEEEEECC-------CCCEEEEEeCCCEEEEEECC-CCceEEEEecCCCcEEEEEEeCC-------------C
Confidence 345778899888865 366888888776 9999995 57777888899999999999975 2
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecC--CeEEE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAV 207 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~--~~LaV 207 (765)
.+|++.+. +++|++||+.+++.+.++.. ...|.++++++ +.|++
T Consensus 68 ~~l~~~~~---------------------------------dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 114 (814)
T 3mkq_A 68 NWIIVGSD---------------------------------DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114 (814)
T ss_dssp TEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred CEEEEEeC---------------------------------CCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEE
Confidence 36665321 36899999999999999985 46899999997 56777
Q ss_pred Ee-CCeEEEEECCCC-ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCC
Q 004255 208 GL-ATQIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (765)
Q Consensus 208 ~~-~~~I~iwD~~t~-~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s 285 (765)
+. ++.|++||+.+. +....+..|..+ ...++++| .+
T Consensus 115 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~-------------v~~~~~~p-------~~---------------------- 152 (814)
T 3mkq_A 115 GSDDLTVKLWNWENNWALEQTFEGHEHF-------------VMCVAFNP-------KD---------------------- 152 (814)
T ss_dssp EETTSEEEEEEGGGTSEEEEEEECCSSC-------------EEEEEEET-------TE----------------------
T ss_pred EcCCCEEEEEECCCCceEEEEEcCCCCc-------------EEEEEEEc-------CC----------------------
Confidence 66 458999999887 444555555442 12334432 00
Q ss_pred cCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 004255 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (765)
Q Consensus 286 ~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~ 365 (765)
+. .++.+..||.|++||+.+++....+
T Consensus 153 -----~~------------------------------------------------~l~~~~~dg~v~vwd~~~~~~~~~~ 179 (814)
T 3mkq_A 153 -----PS------------------------------------------------TFASGCLDRTVKVWSLGQSTPNFTL 179 (814)
T ss_dssp -----EE------------------------------------------------EEEEEETTSEEEEEETTCSSCSEEE
T ss_pred -----CC------------------------------------------------EEEEEeCCCeEEEEECCCCcceeEE
Confidence 00 0112346889999999988887777
Q ss_pred ccCC-CCeEEEEECC--CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255 366 KAHT-SPISALCFDP--SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (765)
Q Consensus 366 ~aH~-~~IsaLaFSp--dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD 442 (765)
..|. .+|.+++|+| +|.+|++++.+| .|++||+.. + ..+..+. + +...|.+++|+||
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~-------~----------~~~~~~~-~-~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDL-TIKIWDYQT-------K----------SCVATLE-G-HMSNVSFAVFHPT 239 (814)
T ss_dssp ECCCTTCCCEEEECCSTTCCEEEEECTTS-EEEEEETTT-------T----------EEEEEEE-C-CSSCEEEEEECSS
T ss_pred ecCCCCCEEEEEEEECCCCCEEEEEeCCC-EEEEEECCC-------C----------cEEEEEc-C-CCCCEEEEEEcCC
Confidence 7655 8999999999 999999999966 599999854 3 3555554 3 3356999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCcccccc
Q 004255 443 SQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (765)
Q Consensus 443 g~~Las~S~dgTVhIwdl~~~gg~~~~~~h 472 (765)
+++|++++.||+|++||+........+..|
T Consensus 240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp SSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence 999999999999999999876544445444
No 76
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.85 E-value=1.9e-18 Score=182.20 Aligned_cols=258 Identities=11% Similarity=0.093 Sum_probs=172.4
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEec---Cc-EEEEEccCCCcceEe-eeeccCCEEEEEEecCCCCCCCCCCcc
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ---NG-FQVLDVEDASNFNEL-VSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~---~G-~qVWdv~~~g~~~el-ls~~dg~V~~v~~lP~p~~~~~~d~f~ 127 (765)
.++++.|.-+.|.. + ...+|++|.. +| ++|||++. +++..+ ...|.++|.++++.|+.
T Consensus 15 ~~h~~~v~~~~~~p----~--~~~l~~~~s~~~~d~~v~iw~~~~-~~~~~~~~~~~~~~v~~~~~~~~~---------- 77 (357)
T 3i2n_A 15 KGFNYTVFDCKWVP----C--SAKFVTMGNFARGTGVIQLYEIQH-GDLKLLREIEKAKPIKCGTFGATS---------- 77 (357)
T ss_dssp EECSSCEEEEEECT----T--SSEEEEEEC--CCCEEEEEEEECS-SSEEEEEEEEESSCEEEEECTTCC----------
T ss_pred cCCCCceEEEEEcC----C--CceEEEecCccCCCcEEEEEeCCC-CcccceeeecccCcEEEEEEcCCC----------
Confidence 34778888888865 1 2467788865 55 99999964 555444 33678999999998741
Q ss_pred ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe-EEEEEeCC-CCEEEEEe-----
Q 004255 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC-YEHVLRFR-SSVCMVRC----- 200 (765)
Q Consensus 128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~-~v~tL~~~-s~V~sV~~----- 200 (765)
....+|++.+. +++|++||+.+++ .+..+..+ ..|.++.+
T Consensus 78 ~~~~~l~~~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 124 (357)
T 3i2n_A 78 LQQRYLATGDF---------------------------------GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLG 124 (357)
T ss_dssp TTTCCEEEEET---------------------------------TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGG
T ss_pred CCCceEEEecC---------------------------------CCeEEEEeCCCCCccEEEEEecccceEEEeeccccc
Confidence 01235655221 3689999999988 88888754 68999964
Q ss_pred -cC--CeEEEEe-CCeEEEEECCCCc-eeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCC
Q 004255 201 -SP--RIVAVGL-ATQIYCFDALTLE-NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQ 275 (765)
Q Consensus 201 -s~--~~LaV~~-~~~I~iwD~~t~~-~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~ 275 (765)
++ ++|+++. ++.|++||+.+++ ....+..+.... ......+++++ ++
T Consensus 125 ~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~---~~---------------- 176 (357)
T 3i2n_A 125 IGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN---------KRDCWTVAFGN---AY---------------- 176 (357)
T ss_dssp CC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC---------CCCEEEEEEEC---CC----------------
T ss_pred cCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC---------CCceEEEEEEe---cc----------------
Confidence 33 4777665 5679999999887 555554433210 00011122110 00
Q ss_pred CCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEE
Q 004255 276 NLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKD 355 (765)
Q Consensus 276 ~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwD 355 (765)
+|.+. .++.+..+|.|++||
T Consensus 177 -----------~~~~~-------------------------------------------------~l~~~~~d~~i~i~d 196 (357)
T 3i2n_A 177 -----------NQEER-------------------------------------------------VVCAGYDNGDIKLFD 196 (357)
T ss_dssp -----------C-CCC-------------------------------------------------EEEEEETTSEEEEEE
T ss_pred -----------CCCCC-------------------------------------------------EEEEEccCCeEEEEE
Confidence 00100 112345689999999
Q ss_pred CCCCcEEEEeccCCCCeEEEEECC---CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 004255 356 FVTRAIISQFKAHTSPISALCFDP---SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 432 (765)
Q Consensus 356 l~s~~~i~~~~aH~~~IsaLaFSp---dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a 432 (765)
+.+++.+ ....|..+|.+++|+| +|.+|++++.+| .|+|||+.... . ........+ .+ +..
T Consensus 197 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~-----~-------~~~~~~~~~-~~-~~~ 260 (357)
T 3i2n_A 197 LRNMALR-WETNIKNGVCSLEFDRKDISMNKLVATSLEG-KFHVFDMRTQH-----P-------TKGFASVSE-KA-HKS 260 (357)
T ss_dssp TTTTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEESTT-EEEEEEEEEEE-----T-------TTEEEEEEE-EC-CSS
T ss_pred CccCcee-eecCCCCceEEEEcCCCCCCCCEEEEECCCC-eEEEEeCcCCC-----c-------ccceeeecc-CC-CcC
Confidence 9998874 4478899999999999 999999999966 59999985410 0 000111122 23 345
Q ss_pred cEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCC
Q 004255 433 TIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 433 ~I~slaFSpDg~-~Las~S~dgTVhIwdl~~~g 464 (765)
.|++++|+||++ +|++++.||+|+|||+....
T Consensus 261 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 261 TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 799999999999 89999999999999998643
No 77
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.85 E-value=3.7e-20 Score=205.14 Aligned_cols=284 Identities=12% Similarity=0.079 Sum_probs=179.7
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEe--eeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNEL--VSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~el--ls~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
+.+.|..+.|... .+++|++|..+| |+|||++. ++...+ +.+|.++|.+|+|.|. ...
T Consensus 118 ~~~~V~~l~~~P~------~~~~lasGs~dg~i~lWd~~~-~~~~~~~~~~gH~~~V~~l~f~p~------------~~~ 178 (435)
T 4e54_B 118 FDRRATSLAWHPT------HPSTVAVGSKGGDIMLWNFGI-KDKPTFIKGIGAGGSITGLKFNPL------------NTN 178 (435)
T ss_dssp CSSCEEEEEECSS------CTTCEEEEETTSCEEEECSSC-CSCCEEECCCSSSCCCCEEEECSS------------CTT
T ss_pred CCCCEEEEEEeCC------CCCEEEEEeCCCEEEEEECCC-CCceeEEEccCCCCCEEEEEEeCC------------CCC
Confidence 4566888888531 256899999887 99999964 333333 4578899999999873 112
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC---CCEEEEEecC--CeEE
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIVA 206 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~---s~V~sV~~s~--~~La 206 (765)
+|++.+ .+++|+|||++++........+ ..+.++++++ ++|+
T Consensus 179 ~l~s~s---------------------------------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (435)
T 4e54_B 179 QFYASS---------------------------------MEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVV 225 (435)
T ss_dssp EEEEEC---------------------------------SSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEE
T ss_pred EEEEEe---------------------------------CCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEE
Confidence 565422 1368999999876554444332 3567888876 6788
Q ss_pred EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCCccccCCCCCCCCC
Q 004255 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (765)
Q Consensus 207 V~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s~~~lt~~~~ 282 (765)
+|. ++.|++||+.+ +.+.++..|..+ ...++|+| .+||.++.+.. ...|+..+....
T Consensus 226 ~g~~dg~i~~wd~~~-~~~~~~~~h~~~-------------v~~v~~~p~~~~~~~s~s~d~~-----v~iwd~~~~~~~ 286 (435)
T 4e54_B 226 TGDNVGNVILLNMDG-KELWNLRMHKKK-------------VTHVALNPCCDWFLATASVDQT-----VKIWDLRQVRGK 286 (435)
T ss_dssp EECSSSBEEEEESSS-CBCCCSBCCSSC-------------EEEEEECTTCSSEEEEEETTSB-----CCEEETTTCCSS
T ss_pred EEeCCCcEeeeccCc-ceeEEEecccce-------------EEeeeecCCCceEEEEecCcce-----eeEEeccccccc
Confidence 776 45799999864 455666666542 35678887 46777765521 113332221100
Q ss_pred CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE
Q 004255 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (765)
Q Consensus 283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i 362 (765)
.. +. ...++ ......+.++++++ .+++++.||.|+|||+.+++..
T Consensus 287 ~~--------~~-----------------~~~~h------~~~v~~~~~spdg~----~l~s~~~D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 287 AS--------FL-----------------YSLPH------RHPVNAACFSPDGA----RLLTTDQKSEIRVYSASQWDCP 331 (435)
T ss_dssp SC--------CS-----------------BCCBC------SSCEEECCBCTTSS----EEEEEESSSCEEEEESSSSSSE
T ss_pred ce--------EE-----------------Eeeec------cccccceeECCCCC----eeEEEcCCCEEEEEECCCCccc
Confidence 00 00 00000 00111223333333 2456789999999999999888
Q ss_pred EEeccCCC------CeEEEEECCCCCEEEEEEc-----------CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255 363 SQFKAHTS------PISALCFDPSGTLLVTASV-----------YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (765)
Q Consensus 363 ~~~~aH~~------~IsaLaFSpdG~lLATaS~-----------dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l 425 (765)
..+..|.. .+..+.|+|++.++++++. +++.|+|||+.+ | ..+..+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~-------g----------~~~~~l 394 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS-------G----------KMMCQL 394 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS-------C----------CEEEEE
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC-------C----------cEEEEE
Confidence 88877653 2334567777777766643 456799999865 4 466777
Q ss_pred ecccccccEEEE-EEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 426 HRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 426 ~rG~~~a~I~sl-aFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
..++ ...|.++ +|||||++||+++ |++|+||++.+.
T Consensus 395 ~~~~-~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 395 YDPE-SSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp CCSS-CCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred eCCC-CCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 5443 3457776 6999999999876 789999999763
No 78
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.85 E-value=4.5e-19 Score=201.43 Aligned_cols=308 Identities=11% Similarity=0.043 Sum_probs=190.2
Q ss_pred cEEEEEEeeccCCCCCC-CeEEEEEecCc-EEEEEccCCCcceEee-e---eccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 58 QVTWAGFDRLEYGPSVF-KQVLLLGYQNG-FQVLDVEDASNFNELV-S---KRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 58 ~v~w~~fd~l~~~~~~~-~~vL~~G~~~G-~qVWdv~~~g~~~ell-s---~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
.|..+.|.. . ++.|++|..+| ++|||+. .++....+ . .|.++|..+.+. + ..
T Consensus 208 ~v~~~~~~~-------~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~v~~~~~~-~-------------~~ 265 (615)
T 1pgu_A 208 FVRDVEFSP-------DSGEFVITVGSDRKISCFDGK-SGEFLKYIEDDQEPVQGGIFALSWL-D-------------SQ 265 (615)
T ss_dssp CEEEEEECS-------TTCCEEEEEETTCCEEEEETT-TCCEEEECCBTTBCCCSCEEEEEES-S-------------SS
T ss_pred eEEEEEECC-------CCCCEEEEEeCCCeEEEEECC-CCCEeEEecccccccCCceEEEEEc-C-------------CC
Confidence 677777654 3 46777777665 9999995 46666666 5 788999999976 3 23
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-----CCEEEEEe-cCCeE
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-----SSVCMVRC-SPRIV 205 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-----s~V~sV~~-s~~~L 205 (765)
+|++.+. +++|++||+++++.+..+..+ ..+.++.+ +.+.|
T Consensus 266 ~l~~~~~---------------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 312 (615)
T 1pgu_A 266 KFATVGA---------------------------------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 312 (615)
T ss_dssp EEEEEET---------------------------------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEE
T ss_pred EEEEEcC---------------------------------CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeE
Confidence 5654221 368999999999999999876 56777777 44666
Q ss_pred EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCce--ecCCccccCCCCCCCCC
Q 004255 206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLL--LSNSGRLSPQNLTPSGV 282 (765)
Q Consensus 206 aV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~--~~~~G~~s~~~lt~~~~ 282 (765)
+++. ++.|++||+.+++.+..+..|..+ ...+++ |. |+.++.+.. ++....+. ........
T Consensus 313 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-------------v~~~~~-~~-l~~~~~dg~i~~w~~~~~~-~~~~~~v~ 376 (615)
T 1pgu_A 313 ISLSLDGTLNFYELGHDEVLKTISGHNKG-------------ITALTV-NP-LISGSYDGRIMEWSSSSMH-QDHSNLIV 376 (615)
T ss_dssp EEEETTSCEEEEETTEEEEEEEECCCSSC-------------EEEEET-TT-TEEEETTSCEEETTTTEEE-CCCCSCEE
T ss_pred EEEECCCCEEEEECCCCcEEEEEeCCCCC-------------EEEEEe-cC-cEEECCCCeEEEEEchhhc-CcccCceE
Confidence 6655 568999999998888888766552 234555 55 555544321 11100000 00000111
Q ss_pred CCCcCCCCCcceeeehhhhh---hhhhccc---------------------ceee------ccccc-ccCCCCCCCCccC
Q 004255 283 SPSTSPGGSSLVARYAMEHS---KQFAAGL---------------------SKTL------SKYCQ-ELLPDGSSSPVSP 331 (765)
Q Consensus 283 s~s~sp~~gslva~~a~d~~---k~la~G~---------------------~ktl------s~~~~-~~~p~~s~~~~s~ 331 (765)
...+ +.+..+++. ..+.. +++..+- .+.+ .+... .+..........+
T Consensus 377 ~~~~-~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (615)
T 1pgu_A 377 SLDN-SKAQEYSSI-SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSL 454 (615)
T ss_dssp EEEC-CSTTCCEEE-ETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred EEEE-CCCcEEEEE-eCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEE
Confidence 1111 111111110 00000 0000000 0000 00000 0000000000111
Q ss_pred CCccccccccccccCC-CCeEEEEECCCCcEE-EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCC
Q 004255 332 NSVWKVGRHAGADMDN-AGIVVVKDFVTRAII-SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG 409 (765)
Q Consensus 332 s~~~~~~~~~~~~~~~-dG~V~IwDl~s~~~i-~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG 409 (765)
+ +..++.+.. +|.|++||+.+++.. ..+.+|..+|.+++|+|+|++||+++.||. |+|||+.. +
T Consensus 455 ~------~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~iw~~~~-------~ 520 (615)
T 1pgu_A 455 S------QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQS-------R 520 (615)
T ss_dssp C------SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T
T ss_pred c------CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe-EEEeeCCC-------C
Confidence 1 112345667 999999999988766 778899999999999999999999999775 99999965 3
Q ss_pred CCccccCCcceEEEEEecccccccEEEEEEcc----------CCCEEEEEeCCCcEEEEeCCCC
Q 004255 410 NHKYDWNSSHVHLYKLHRGITSATIQDICFSH----------YSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 410 ~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp----------Dg~~Las~S~dgTVhIwdl~~~ 463 (765)
..+..+. +.+...|++++|+| |+++||+++.||+|+||++...
T Consensus 521 ----------~~~~~~~-~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 521 ----------EVKTSRW-AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp ----------EEEECCS-CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred ----------cceeEee-cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 3444443 42456799999999 9999999999999999999875
No 79
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.85 E-value=4e-19 Score=193.27 Aligned_cols=269 Identities=11% Similarity=0.004 Sum_probs=161.7
Q ss_pred CeEEEEEecCcEEEEEccCCC--cceEeeeeccCCEEEEEEecCCCC---------C---CCCCCcccc----CCEEEEE
Q 004255 75 KQVLLLGYQNGFQVLDVEDAS--NFNELVSKRDGPVSFLQMQPFPVK---------D---DGCEGFRKL----HPFLLVV 136 (765)
Q Consensus 75 ~~vL~~G~~~G~qVWdv~~~g--~~~ells~~dg~V~~v~~lP~p~~---------~---~~~d~f~~s----rpLLavv 136 (765)
.-|++++....+++|+..+.. +....+..|+.||..|.++|+--. . ...-.|... +++|+.
T Consensus 54 ~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s- 132 (356)
T 2w18_A 54 EPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLK- 132 (356)
T ss_dssp EEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEE-
T ss_pred ccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEe-
Confidence 469999999999999997643 344455556667777776652100 0 000001112 222221
Q ss_pred EcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEEC-CCCeEEEEEeCCC-CEEEEEecC-----CeEEEEe
Q 004255 137 AGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-QSHCYEHVLRFRS-SVCMVRCSP-----RIVAVGL 209 (765)
Q Consensus 137 ~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdl-ktg~~v~tL~~~s-~V~sV~~s~-----~~LaV~~ 209 (765)
.+.. . ..-++.+|..-.... ...+++|++|++ .+|+.+.++..++ .+..++|++ .+||.+.
T Consensus 133 ~g~~-~---------~v~~l~~g~lv~ss~--~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS 200 (356)
T 2w18_A 133 SGNI-K---------AVLGLTKRRLVSSSG--TLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT 200 (356)
T ss_dssp EEEE-E---------EEEEETTTEEEEEES--SSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE
T ss_pred CCCe-E---------EEEecCCCcEEEecc--cCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec
Confidence 1000 0 000011111000000 012689999999 5588888887654 444444444 7888754
Q ss_pred -CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255 210 -ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (765)
Q Consensus 210 -~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~ 286 (765)
|++|+|||+.|+++++++.++..... ....++|+| ++++..+.+. + .|
T Consensus 201 ~D~TIkIWDl~TGk~l~tL~g~~~~v~----------~v~~vafSpdG~~lvs~s~~~-----~--~w------------ 251 (356)
T 2w18_A 201 IMNNIVIWNLKTGQLLKKMHIDDSYQA----------SVCHKAYSEMGLLFIVLSHPC-----A--KE------------ 251 (356)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC---C----------CCEEEEEEETTEEEEEEC-------------------------
T ss_pred CCCcEEEEECCCCcEEEEEcCCCccee----------eeEEEEECCCCCEEEEeccCC-----C--cc------------
Confidence 66899999999999999986543100 122346655 3333332110 0 00
Q ss_pred CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe-
Q 004255 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF- 365 (765)
Q Consensus 287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~- 365 (765)
.++++..|++|++||..+++.+..+
T Consensus 252 ------------------------------------------------------~laSGs~D~tIklWd~~tgk~l~v~~ 277 (356)
T 2w18_A 252 ------------------------------------------------------SESLRSPVFQLIVINPKTTLSVGVML 277 (356)
T ss_dssp ------------------------------------------------------------CCEEEEEEETTTTEEEEEEE
T ss_pred ------------------------------------------------------eeeccCCCcEEEEEECCCCEEEEEEE
Confidence 0124568999999999999987765
Q ss_pred ----ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 004255 366 ----KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (765)
Q Consensus 366 ----~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp 441 (765)
.+|...+.+..+ +|.++|+++.|++ |||||+.+ | +.+.+|. |++...+.+++|||
T Consensus 278 ~~~p~Gh~~~~lsg~~--sg~~lASgS~DgT-IkIWDl~t-------G----------k~l~tL~-gH~~~vvs~vafSP 336 (356)
T 2w18_A 278 YCLPPGQAGRFLEGDV--KDHCAAAILTSGT-IAIWDLLL-------G----------QCTALLP-PVSDQHWSFVKWSG 336 (356)
T ss_dssp ECCCTTCCCCEEEEEE--ETTEEEEEETTSC-EEEEETTT-------C----------SEEEEEC-CC--CCCCEEEECS
T ss_pred eeccCCCcceeEcccc--CCCEEEEEcCCCc-EEEEECCC-------C----------cEEEEec-CCCCCeEEEEEECC
Confidence 478776554444 4899999999775 99999965 4 5777775 54444455799999
Q ss_pred CCCEEEEEeCCCcEEEEeC
Q 004255 442 YSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 442 Dg~~Las~S~dgTVhIwdl 460 (765)
||++|++|+.|+||+|||+
T Consensus 337 DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 337 TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSSEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEECCCcEEEecC
Confidence 9999999999999999996
No 80
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.85 E-value=2.9e-19 Score=202.99 Aligned_cols=250 Identities=12% Similarity=0.089 Sum_probs=186.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCC----cceEeeeeccCC-EEEEEEec--CCCCCCCCC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDAS----NFNELVSKRDGP-VSFLQMQP--FPVKDDGCE 124 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g----~~~ells~~dg~-V~~v~~lP--~p~~~~~~d 124 (765)
...+++.|..+.|.. +++.|++|..+.++|||++ .+ +....+..|.++ |.++++.| +.
T Consensus 14 ~~~~~~~v~~~~~sp-------dg~~l~~~~~~~v~v~~~~-~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~------- 78 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDP-------TTNAIAYPCGKSAFVRCLD-DGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS------- 78 (615)
T ss_dssp CCCCTTCCCCCEEET-------TTTEEEEEETTEEEEEECC-SSCCSSCSEEEECTTTTSCEEEEEECSSTTC-------
T ss_pred CCCccCceeEEEECC-------CCCEEEEecCCeEEEEECC-CCCCccccceEEecCCCceEEEEEECcCCCC-------
Confidence 345778888888876 3668888887779999996 45 677788899999 99999997 52
Q ss_pred CccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC--------eEEEEEe-CCCCE
Q 004255 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--------CYEHVLR-FRSSV 195 (765)
Q Consensus 125 ~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg--------~~v~tL~-~~s~V 195 (765)
.+||+... +++|++||+.++ +.+..+. +...|
T Consensus 79 ------~~l~s~~~---------------------------------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 119 (615)
T 1pgu_A 79 ------QYLCSGDE---------------------------------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPI 119 (615)
T ss_dssp ------CEEEEEET---------------------------------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCE
T ss_pred ------CEEEEecC---------------------------------CCEEEEEeCCCCcccccccccccchhhcccccE
Confidence 36665221 368999999855 6777776 45799
Q ss_pred EEEEecC--CeEEEEeCC-----eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecC
Q 004255 196 CMVRCSP--RIVAVGLAT-----QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSN 268 (765)
Q Consensus 196 ~sV~~s~--~~LaV~~~~-----~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~ 268 (765)
.++++++ ++|+++..+ .|++|| +++.+..+..|..+ ...++++| +.
T Consensus 120 ~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~-------------v~~~~~~~-------~~----- 172 (615)
T 1pgu_A 120 SDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR-------------INACHLKQ-------SR----- 172 (615)
T ss_dssp EEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC-------------EEEEEECS-------SS-----
T ss_pred EEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc-------------EEEEEECC-------CC-----
Confidence 9999998 577776654 688888 55666666555431 22334332 10
Q ss_pred CccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCC
Q 004255 269 SGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA 348 (765)
Q Consensus 269 ~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~d 348 (765)
.. .++.+..|
T Consensus 173 ----------------------~~------------------------------------------------~l~~~~~d 182 (615)
T 1pgu_A 173 ----------------------PM------------------------------------------------RSMTVGDD 182 (615)
T ss_dssp ----------------------SC------------------------------------------------EEEEEETT
T ss_pred ----------------------Cc------------------------------------------------EEEEEeCC
Confidence 00 01134568
Q ss_pred CeEEEEECCCCcEEEEeccCCC---CeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 004255 349 GIVVVKDFVTRAIISQFKAHTS---PISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~---~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~ 424 (765)
|.|+|||+.+++.+..+.+|.. +|.+++|+|+ |++|++++.||. |+|||+.. + ..+..
T Consensus 183 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~-------~----------~~~~~ 244 (615)
T 1pgu_A 183 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKS-------G----------EFLKY 244 (615)
T ss_dssp TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTT-------C----------CEEEE
T ss_pred CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCC-------C----------CEeEE
Confidence 9999999999999999999999 9999999999 999999999775 99999865 3 35556
Q ss_pred Eec---ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccc
Q 004255 425 LHR---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (765)
Q Consensus 425 l~r---G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h 472 (765)
+.. + +...|.+++|+ |+++|++++.|++|++||+........+..|
T Consensus 245 ~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 245 IEDDQEP-VQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp CCBTTBC-CCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ecccccc-cCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 533 3 34579999999 9999999999999999999865443334333
No 81
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.85 E-value=1.5e-19 Score=190.23 Aligned_cols=256 Identities=12% Similarity=0.028 Sum_probs=171.0
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc--ceEeeeeccCCEEEEEEecCCCCCCCCCCccc
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRK 128 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~--~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~ 128 (765)
...+++.|..+.|.. .++.|++|..+| ++|||++.... ....+..|.++|.++++.|+
T Consensus 7 ~~~h~~~v~~~~~s~-------~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------ 67 (342)
T 1yfq_A 7 EQAPKDYISDIKIIP-------SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN------------ 67 (342)
T ss_dssp SSCCSSCEEEEEEEG-------GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES------------
T ss_pred ccCCCCcEEEEEEcC-------CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC------------
Confidence 346889999999986 145777777665 99999965331 13344578899999999974
Q ss_pred cCC-EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEEC-CCCeEEEEEe---CCCCEEEEEecC-
Q 004255 129 LHP-FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-QSHCYEHVLR---FRSSVCMVRCSP- 202 (765)
Q Consensus 129 srp-LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdl-ktg~~v~tL~---~~s~V~sV~~s~- 202 (765)
.. +|++.+. +++|++||+ .+++. ..+. +...|.++++++
T Consensus 68 -~~~~l~~~~~---------------------------------dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~ 112 (342)
T 1yfq_A 68 -TDLQIYVGTV---------------------------------QGEILKVDLIGSPSF-QALTNNEANLGICRICKYGD 112 (342)
T ss_dssp -SSEEEEEEET---------------------------------TSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETT
T ss_pred -CCcEEEEEcC---------------------------------CCeEEEEEeccCCce-EeccccCCCCceEEEEeCCC
Confidence 24 5554221 358999999 88876 4444 557999999985
Q ss_pred CeEEEEe-CCeEEEEECCC---------CceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccc
Q 004255 203 RIVAVGL-ATQIYCFDALT---------LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL 272 (765)
Q Consensus 203 ~~LaV~~-~~~I~iwD~~t---------~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~ 272 (765)
++|+++. ++.|++||+.+ ++++.++. ++. ....+++++..
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~-------------~v~~~~~~~~~---------------- 162 (342)
T 1yfq_A 113 DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKN-------------KIFTMDTNSSR---------------- 162 (342)
T ss_dssp TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCC-------------CEEEEEECSSE----------------
T ss_pred CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCC-------------ceEEEEecCCc----------------
Confidence 6666654 56899999876 33222211 111 01112221111
Q ss_pred cCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEE
Q 004255 273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV 352 (765)
Q Consensus 273 s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~ 352 (765)
++.+..+|.|+
T Consensus 163 ---------------------------------------------------------------------l~~~~~d~~i~ 173 (342)
T 1yfq_A 163 ---------------------------------------------------------------------LIVGMNNSQVQ 173 (342)
T ss_dssp ---------------------------------------------------------------------EEEEESTTEEE
T ss_pred ---------------------------------------------------------------------EEEEeCCCeEE
Confidence 11335678999
Q ss_pred EEECCC-Cc--EEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255 353 VKDFVT-RA--IISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (765)
Q Consensus 353 IwDl~s-~~--~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG 428 (765)
+||+.+ +. .......|..+|.+++|+| +|.+|++++.+| .|+|||+... +.. .....++.+...
T Consensus 174 i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg-~i~i~~~~~~------~~~-----~~~~~~~~~~~~ 241 (342)
T 1yfq_A 174 WFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG-RVAVEFFDDQ------GDD-----YNSSKRFAFRCH 241 (342)
T ss_dssp EEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS-EEEEEECCTT------CCS-----TTCTTCEEEECC
T ss_pred EEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC-cEEEEEEcCC------Ccc-----cccccceeeecc
Confidence 999998 54 3345567899999999999 999999999966 5999998542 000 000123334321
Q ss_pred c-------ccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccc
Q 004255 429 I-------TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (765)
Q Consensus 429 ~-------~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h 472 (765)
. +...|.+++|+||+++|++++.||+|+|||+........+..|
T Consensus 242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred cccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence 1 1237999999999999999999999999999865433334443
No 82
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.4e-19 Score=220.60 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=91.2
Q ss_pred CccCCCccccccccccccCCCCeEEEEECCCC---------------------------------------------cEE
Q 004255 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR---------------------------------------------AII 362 (765)
Q Consensus 328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~---------------------------------------------~~i 362 (765)
.+.++++++. ++.+..||+|+|||+.++ +++
T Consensus 493 svafspdg~~----LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 568 (902)
T 2oaj_A 493 KISFAAETLE----LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPS 568 (902)
T ss_dssp EEEEETTTTE----EEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEE
T ss_pred EEEecCCCCe----EEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcccee
Confidence 3445555443 557889999999999766 247
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE--EEe---cccccccEEEE
Q 004255 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY--KLH---RGITSATIQDI 437 (765)
Q Consensus 363 ~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~--~l~---rG~~~a~I~sl 437 (765)
..+.+|.++|++|+||||| +||+|+.|+ +|+|||+.. + ..++ .++ .| +...|++|
T Consensus 569 ~~l~~h~~~V~svafSpdG-~lAsgs~D~-tv~lwd~~~-------~----------~~~~~~~~~~~~~g-h~~~V~sv 628 (902)
T 2oaj_A 569 TAVHANKGKTSAINNSNIG-FVGIAYAAG-SLMLIDRRG-------P----------AIIYMENIREISGA-QSACVTCI 628 (902)
T ss_dssp EEECCCSCSEEEEEECBTS-EEEEEETTS-EEEEEETTT-------T----------EEEEEEEGGGTCSS-CCCCEEEE
T ss_pred EEEEcCCCcEEEEEecCCc-EEEEEeCCC-cEEEEECCC-------C----------eEEEEeehhHhccc-cccceEEE
Confidence 7889999999999999999 999999965 599999854 1 2333 221 13 34579999
Q ss_pred EEc-----cCC---CEEEEEeCCCcEEEEeCCC---CCCCccccccc
Q 004255 438 CFS-----HYS---QWIAIVSSKGTCHVFVLSP---FGGDSGFQTLS 473 (765)
Q Consensus 438 aFS-----pDg---~~Las~S~dgTVhIwdl~~---~gg~~~~~~h~ 473 (765)
+|| ||| ++|++++.|+||++||+.+ ......+..|.
T Consensus 629 ~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~ 675 (902)
T 2oaj_A 629 EFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDIT 675 (902)
T ss_dssp EEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEE
T ss_pred EEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCce
Confidence 999 885 8999999999999999932 22234455554
No 83
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.85 E-value=1.2e-19 Score=197.87 Aligned_cols=228 Identities=14% Similarity=0.105 Sum_probs=163.1
Q ss_pred EEEEEecCc-EEEEEccCCCc---ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255 77 VLLLGYQNG-FQVLDVEDASN---FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (765)
Q Consensus 77 vL~~G~~~G-~qVWdv~~~g~---~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~ 152 (765)
+++.|+.+| |+|||++..+. ....+..|.++|..+++.|. ...+|++.+.
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~------------~~~~l~s~s~-------------- 102 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH------------NDNVIASGSE-------------- 102 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT------------CTTEEEEEET--------------
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC------------CCCEEEEEeC--------------
Confidence 444456555 99999966543 33457789999999999972 1236665321
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCC-------eEEEEEeC-CCCEEEEEecC---CeEEEEe-CCeEEEEECCC
Q 004255 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-------CYEHVLRF-RSSVCMVRCSP---RIVAVGL-ATQIYCFDALT 220 (765)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg-------~~v~tL~~-~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~t 220 (765)
+++|+|||+.++ +.+..+.. ...|.+|++++ ++|+++. ++.|++||+.+
T Consensus 103 -------------------dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 163 (402)
T 2aq5_A 103 -------------------DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT 163 (402)
T ss_dssp -------------------TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT
T ss_pred -------------------CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC
Confidence 368999999988 66778875 46999999997 3677655 56799999999
Q ss_pred CceeEEE--EecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeeh
Q 004255 221 LENKFSV--LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA 298 (765)
Q Consensus 221 ~~~l~tl--~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a 298 (765)
++.+.++ ..|..+ ...++++| +. .
T Consensus 164 ~~~~~~~~~~~~~~~-------------v~~~~~~~-------~~---------------------------~------- 189 (402)
T 2aq5_A 164 GAAVLTLGPDVHPDT-------------IYSVDWSR-------DG---------------------------A------- 189 (402)
T ss_dssp TEEEEEECTTTCCSC-------------EEEEEECT-------TS---------------------------S-------
T ss_pred CCccEEEecCCCCCc-------------eEEEEECC-------CC---------------------------C-------
Confidence 9888777 344331 12333322 10 0
Q ss_pred hhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe-ccCCCC-eEEEE
Q 004255 299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-KAHTSP-ISALC 376 (765)
Q Consensus 299 ~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~-~aH~~~-IsaLa 376 (765)
.++.+..||.|+|||+.+++.+..+ .+|... +.+++
T Consensus 190 ------------------------------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 227 (402)
T 2aq5_A 190 ------------------------------------------LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV 227 (402)
T ss_dssp ------------------------------------------CEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEE
T ss_pred ------------------------------------------EEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEE
Confidence 0113456899999999999999999 799876 89999
Q ss_pred ECCCCCEEEEE---EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE-EeCC
Q 004255 377 FDPSGTLLVTA---SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI-VSSK 452 (765)
Q Consensus 377 FSpdG~lLATa---S~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las-~S~d 452 (765)
|+|+|.+|+++ +.++ .|+|||+... . .......+ + +...|.+++|+||+++|++ ++.|
T Consensus 228 ~~~~~~~l~~g~~~~~d~-~i~iwd~~~~-------~-------~~~~~~~~--~-~~~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 228 FVSEGKILTTGFSRMSER-QVALWDTKHL-------E-------EPLSLQEL--D-TSSGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp ECSTTEEEEEEECTTCCE-EEEEEETTBC-------S-------SCSEEEEC--C-CCSSCEEEEEETTTTEEEEEETTC
T ss_pred EcCCCcEEEEeccCCCCc-eEEEEcCccc-------c-------CCceEEec--c-CCCceeEEEEcCCCCEEEEEEcCC
Confidence 99999999999 5644 6999999651 1 00122222 1 2345899999999999975 5579
Q ss_pred CcEEEEeCCCC
Q 004255 453 GTCHVFVLSPF 463 (765)
Q Consensus 453 gTVhIwdl~~~ 463 (765)
|+|+||++...
T Consensus 290 g~i~i~d~~~~ 300 (402)
T 2aq5_A 290 SSIRYFEITSE 300 (402)
T ss_dssp SCEEEEEECSS
T ss_pred CeEEEEEecCC
Confidence 99999999764
No 84
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.84 E-value=5.9e-20 Score=228.37 Aligned_cols=243 Identities=13% Similarity=0.178 Sum_probs=177.5
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (765)
Q Consensus 74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~ 152 (765)
.++.|++|..+| +++||+. .+.....+..|.++|..+++.|+. .+|++ ++
T Consensus 972 ~g~~l~~g~~~g~i~i~d~~-~~~~~~~~~~h~~~v~~l~~s~dg-------------~~l~s-~~-------------- 1022 (1249)
T 3sfz_A 972 HLEYVAFGDEDGAIKIIELP-NNRVFSSGVGHKKAVRHIQFTADG-------------KTLIS-SS-------------- 1022 (1249)
T ss_dssp TSSEEEEEETTSCCEEEETT-TTSCEEECCCCSSCCCCEEECSSS-------------SCEEE-EC--------------
T ss_pred CCCEEEEEcCCCCEEEEEcC-CCceeeecccCCCceEEEEECCCC-------------CEEEE-Ec--------------
Confidence 366888888877 9999995 567777888999999999998752 35554 22
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEec
Q 004255 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTY 230 (765)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~ 230 (765)
.+++|++||+.+++.+....+...|.++.+++ ++++++.++.|++||+.+++...++..|
T Consensus 1023 ------------------~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 1084 (1249)
T 3sfz_A 1023 ------------------EDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCH 1084 (1249)
T ss_dssp ------------------SSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECC
T ss_pred ------------------CCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEccc
Confidence 13689999999999887666778999999987 4555566788999999999988888766
Q ss_pred CCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccc
Q 004255 231 PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS 310 (765)
Q Consensus 231 p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ 310 (765)
..+ ...++++| +. .
T Consensus 1085 ~~~-------------v~~~~~s~-------d~---------------------------~------------------- 1098 (1249)
T 3sfz_A 1085 QGT-------------VLSCAISS-------DA---------------------------T------------------- 1098 (1249)
T ss_dssp SSC-------------CCCEEECS-------SS---------------------------S-------------------
T ss_pred CCc-------------EEEEEECC-------CC---------------------------C-------------------
Confidence 542 22344432 10 0
Q ss_pred eeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC
Q 004255 311 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY 390 (765)
Q Consensus 311 ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d 390 (765)
.++.++.||+|+|||+.+++.+..+.+|..+|.+++|+|||++|||++.|
T Consensus 1099 ------------------------------~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~d 1148 (1249)
T 3sfz_A 1099 ------------------------------KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDN 1148 (1249)
T ss_dssp ------------------------------SCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred ------------------------------EEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCC
Confidence 01234568899999999999999999999999999999999999999997
Q ss_pred CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccc
Q 004255 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 470 (765)
Q Consensus 391 Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~ 470 (765)
|+ |+|||+.+.... .... .........+ +...|++++|||||++|++++ |+|++||+........+.
T Consensus 1149 g~-i~vwd~~~~~~~-------~~~~--~~~~~~~~~~-~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~ 1215 (1249)
T 3sfz_A 1149 GE-IRIWNVSDGQLL-------HSCA--PISVEEGTAT-HGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFY 1215 (1249)
T ss_dssp SC-CCEEESSSSCCC-------CCCC--CCC--------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCC
T ss_pred CE-EEEEECCCCceE-------EEec--cccccccccc-cCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeee
Confidence 76 999999652100 0000 0000011112 335699999999999999886 899999998755544444
Q ss_pred cc
Q 004255 471 TL 472 (765)
Q Consensus 471 ~h 472 (765)
.|
T Consensus 1216 ~~ 1217 (1249)
T 3sfz_A 1216 TN 1217 (1249)
T ss_dssp CS
T ss_pred cc
Confidence 44
No 85
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.6e-19 Score=191.61 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=77.2
Q ss_pred cCCCCeEEEEECCCCcEE-EEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 345 MDNAGIVVVKDFVTRAII-SQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 345 ~~~dG~V~IwDl~s~~~i-~~~~a-H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
+..||.|+|||+.+++.+ ..|.+ |..+|.+|+|+|+|.+|++++. + .|+|||++... . . ..+
T Consensus 188 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~-~v~iwd~~~~~-----~--~-------~~~ 251 (343)
T 3lrv_A 188 YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-Q-TVVCFDLRKDV-----G--T-------LAY 251 (343)
T ss_dssp ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-S-BEEEEETTSST-----T--C-------BSS
T ss_pred EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-C-eEEEEEcCCCC-----c--c-------eee
Confidence 456899999999999887 88998 9999999999999999999995 6 69999996521 0 0 000
Q ss_pred EEEecccccccE--EEEEEccCCCEEEEEeC-CCcEEEEeCCCC
Q 004255 423 YKLHRGITSATI--QDICFSHYSQWIAIVSS-KGTCHVFVLSPF 463 (765)
Q Consensus 423 ~~l~rG~~~a~I--~slaFSpDg~~Las~S~-dgTVhIwdl~~~ 463 (765)
..+. + +...+ .+++|+|||++|++++. |++++||++...
T Consensus 252 ~~~~-~-~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 252 PTYT-I-PEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp CCCB-C------CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred cccc-c-ccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 0000 0 00112 47999999999999999 999999999754
No 86
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.2e-19 Score=214.17 Aligned_cols=264 Identities=11% Similarity=0.117 Sum_probs=178.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC-CCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED-ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~-~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~s 129 (765)
..+|++.|..+.|+. .++.|++|..+| ++|||+.. .+.....+..|.++|.++++.|++ .
T Consensus 5 l~gH~~~V~~l~~s~-------dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~-----------~ 66 (753)
T 3jro_A 5 ANAHNELIHDAVLDY-------YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------F 66 (753)
T ss_dssp ---CCCCEEEECCCS-------SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-----------S
T ss_pred cccCcceeEEEEECC-------CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-----------C
Confidence 457888899888865 245777887766 99999963 345566788899999999998642 1
Q ss_pred CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeC-CCCEEEEEecCC---
Q 004255 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRF-RSSVCMVRCSPR--- 203 (765)
Q Consensus 130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~--~v~tL~~-~s~V~sV~~s~~--- 203 (765)
..+|++++. +++|++||+.+++ .+..+.. ...|.++++++.
T Consensus 67 ~~~l~s~s~---------------------------------Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~ 113 (753)
T 3jro_A 67 GTILASCSY---------------------------------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 113 (753)
T ss_dssp CSEEEEEET---------------------------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred CCEEEEEeC---------------------------------CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCC
Confidence 236665332 3689999999997 5666654 469999999863
Q ss_pred -eEEEEe-CCeEEEEECCCCce--eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCC
Q 004255 204 -IVAVGL-ATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP 279 (765)
Q Consensus 204 -~LaV~~-~~~I~iwD~~t~~~--l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~ 279 (765)
+|+++. ++.|++||+.+... ...+..|+.+ ...++++|..+...+..
T Consensus 114 ~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~-------------v~~l~~~p~~~~~~~~~---------------- 164 (753)
T 3jro_A 114 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VNSASWAPATIEEDGEH---------------- 164 (753)
T ss_dssp SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC-------------EEEEEECCCC-----------------------
T ss_pred CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc-------------eEEEEecCccccccccc----------------
Confidence 666655 56899999988743 2333344331 22334433111100000
Q ss_pred CCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 004255 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (765)
Q Consensus 280 ~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~ 359 (765)
...+ .+..++.+..||.|+|||+.++
T Consensus 165 --------------------------------------------------~~~~----d~~~l~sgs~dg~I~iwd~~~~ 190 (753)
T 3jro_A 165 --------------------------------------------------NGTK----ESRKFVTGGADNLVKIWKYNSD 190 (753)
T ss_dssp ----------------------------------------------------CG----GGCCEEEEETTSCEEEEEEETT
T ss_pred --------------------------------------------------ccCC----CCCEEEEEECCCeEEEEeccCC
Confidence 0000 0011335678999999999877
Q ss_pred ----cEEEEeccCCCCeEEEEECCC---CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 004255 360 ----AIISQFKAHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 432 (765)
Q Consensus 360 ----~~i~~~~aH~~~IsaLaFSpd---G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a 432 (765)
..+..+.+|..+|.+++|+|+ |.+|++++.||. |+|||+.... +. ....+.. ...+..
T Consensus 191 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iwd~~~~~-----~~-------~~~~~~~--~~~~~~ 255 (753)
T 3jro_A 191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQ-----GP-------WKKTLLK--EEKFPD 255 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EEEEEESSSS-----SC-------CBCCBSS--SSCCSS
T ss_pred cccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EEEecCCCCC-----Cc-------ceeEEec--cCCCCC
Confidence 567788999999999999999 999999999775 9999986520 00 0001111 112345
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 433 ~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g 464 (765)
.|++++|+|||++|++++.||+|+||++...+
T Consensus 256 ~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 69999999999999999999999999998644
No 87
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.83 E-value=7.5e-19 Score=184.68 Aligned_cols=207 Identities=14% Similarity=0.172 Sum_probs=146.2
Q ss_pred eeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEE
Q 004255 100 LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYS 179 (765)
Q Consensus 100 lls~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWd 179 (765)
++..|.++|..++|.|+. .+||+.+. +++|+|||
T Consensus 4 ~~~~h~~~V~~~~~s~~g-------------~~las~s~---------------------------------D~~v~iw~ 37 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYG-------------KRMATCSS---------------------------------DKTIKIFE 37 (297)
T ss_dssp ECCSCSSCEEEEEECTTS-------------SEEEEEET---------------------------------TSCEEEEE
T ss_pred eccCCcCceEEEEECCCC-------------CEEEEEeC---------------------------------CCEEEEEe
Confidence 567889999999998742 36665321 36899999
Q ss_pred CCC--CeEEEEEeCC-CCEEEEEecC----CeEEEEe-CCeEEEEECCCCc--eeEEEEecCCcccCCCCccccccccce
Q 004255 180 FQS--HCYEHVLRFR-SSVCMVRCSP----RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGYGP 249 (765)
Q Consensus 180 lkt--g~~v~tL~~~-s~V~sV~~s~----~~LaV~~-~~~I~iwD~~t~~--~l~tl~t~p~p~~~~~~~~~~~~~~~~ 249 (765)
+.+ ++++.+|..+ .+|++|+|++ ++|+++. +++|++||+.+++ .+.++..|..+ ...
T Consensus 38 ~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~-------------v~~ 104 (297)
T 2pm7_B 38 VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSAS-------------VNS 104 (297)
T ss_dssp BCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSC-------------EEE
T ss_pred cCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCc-------------eeE
Confidence 974 4678888765 6999999963 5777765 5689999998764 33444334331 123
Q ss_pred eEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCc
Q 004255 250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV 329 (765)
Q Consensus 250 ~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~ 329 (765)
++++| +. .+.
T Consensus 105 v~~~p-------~~--------------------------~g~------------------------------------- 114 (297)
T 2pm7_B 105 VQWAP-------HE--------------------------YGP------------------------------------- 114 (297)
T ss_dssp EEECC-------GG--------------------------GCS-------------------------------------
T ss_pred EEeCc-------CC--------------------------CCc-------------------------------------
Confidence 33322 10 000
Q ss_pred cCCCccccccccccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEECCC-------------CCEEEEEEcCCCEE
Q 004255 330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDPS-------------GTLLVTASVYGNNI 394 (765)
Q Consensus 330 s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~--~i~~~~aH~~~IsaLaFSpd-------------G~lLATaS~dGt~I 394 (765)
.++.+..||.|+|||+.++. ....+.+|...|.+++|+|+ +++||||+.|++ |
T Consensus 115 -----------~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~-v 182 (297)
T 2pm7_B 115 -----------MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL-V 182 (297)
T ss_dssp -----------EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSC-E
T ss_pred -----------EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCc-E
Confidence 01234578999999998763 24568899999999999997 579999999775 9
Q ss_pred EEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC---CEEEEEeCCCcEEEEeCCC
Q 004255 395 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS---QWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 395 rVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg---~~Las~S~dgTVhIwdl~~ 462 (765)
+|||+.. +. .....+..+ .| |...|.+|+|+||+ ++||+++.|++|+|||+..
T Consensus 183 ~lwd~~~-------~~------~~~~~~~~l-~~-H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 183 KIWKYNS-------DA------QTYVLESTL-EG-HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp EEEEEET-------TT------TEEEEEEEE-CC-CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred EEEEEcC-------CC------ceEEEEEEe-cC-CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 9999854 10 001133445 35 34579999999995 8999999999999999875
No 88
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.83 E-value=8.9e-19 Score=193.99 Aligned_cols=239 Identities=13% Similarity=0.173 Sum_probs=165.1
Q ss_pred CeEEEEEecCc-EEEEEccCC---------CcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCC
Q 004255 75 KQVLLLGYQNG-FQVLDVEDA---------SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTL 144 (765)
Q Consensus 75 ~~vL~~G~~~G-~qVWdv~~~---------g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~ 144 (765)
+.+|++|..+| ++|||+... ......+..|.+.|.+|.+.|+. ..+|++ ++
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~------------~~~l~s-~~------ 201 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNL------------NGYLLS-AS------ 201 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTS------------TTEEEE-EC------
T ss_pred CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCC------------CCeEEE-Ee------
Confidence 57899998877 999999652 34556677888999999998741 115544 21
Q ss_pred CCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-------EEEEe-CCCCEEEEEecC---CeEEEEe-CCe
Q 004255 145 APGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-------EHVLR-FRSSVCMVRCSP---RIVAVGL-ATQ 212 (765)
Q Consensus 145 ~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~-------v~tL~-~~s~V~sV~~s~---~~LaV~~-~~~ 212 (765)
.+++|++||+.++.. ...+. +...|.+|++++ .+|+++. ++.
T Consensus 202 --------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~ 255 (430)
T 2xyi_A 202 --------------------------DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255 (430)
T ss_dssp --------------------------TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred --------------------------CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe
Confidence 136899999987432 33443 346899999986 5776665 568
Q ss_pred EEEEECCCC---ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCC
Q 004255 213 IYCFDALTL---ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (765)
Q Consensus 213 I~iwD~~t~---~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~ 289 (765)
|++||+.+. +....+..|..+ ...++++| ..
T Consensus 256 i~i~d~~~~~~~~~~~~~~~~~~~-------------v~~i~~~p-------~~-------------------------- 289 (430)
T 2xyi_A 256 LMIWDTRNNNTSKPSHTVDAHTAE-------------VNCLSFNP-------YS-------------------------- 289 (430)
T ss_dssp EEEEETTCSCSSSCSEEEECCSSC-------------EEEEEECS-------SC--------------------------
T ss_pred EEEEECCCCCCCcceeEeecCCCC-------------eEEEEeCC-------CC--------------------------
Confidence 999999987 455555544331 12333322 10
Q ss_pred CCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC-CcEEEEeccC
Q 004255 290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFKAH 368 (765)
Q Consensus 290 ~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s-~~~i~~~~aH 368 (765)
.. .++.+..||.|+|||+.+ ...+..+.+|
T Consensus 290 -~~------------------------------------------------~l~tg~~dg~v~vwd~~~~~~~~~~~~~h 320 (430)
T 2xyi_A 290 -EF------------------------------------------------ILATGSADKTVALWDLRNLKLKLHSFESH 320 (430)
T ss_dssp -TT------------------------------------------------EEEEEETTSEEEEEETTCTTSCSEEEECC
T ss_pred -CC------------------------------------------------EEEEEeCCCeEEEEeCCCCCCCeEEeecC
Confidence 00 012345689999999998 5678899999
Q ss_pred CCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCcc--c-cCCcceEEEEEecccccccEEEEEEccCCC
Q 004255 369 TSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKY--D-WNSSHVHLYKLHRGITSATIQDICFSHYSQ 444 (765)
Q Consensus 369 ~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~--~-~~~s~~~l~~l~rG~~~a~I~slaFSpDg~ 444 (765)
..+|.+|+|+|+|. +||+++.||. |+|||+... +.... + -......++.+ .| +...|.+++|+|+++
T Consensus 321 ~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~p~~~ 391 (430)
T 2xyi_A 321 KDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKI------GEEQSTEDAEDGPPELLFIH-GG-HTAKISDFSWNPNEP 391 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGT------TCCCCHHHHHHCCTTEEEEC-CC-CSSCEEEEEECSSST
T ss_pred CCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCC------ccccCccccccCCcceEEEc-CC-CCCCceEEEECCCCC
Confidence 99999999999995 7999999775 999999641 10000 0 00001344443 34 345799999999999
Q ss_pred -EEEEEeCCCcEEEEeCCC
Q 004255 445 -WIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 445 -~Las~S~dgTVhIwdl~~ 462 (765)
+|++++.||+|+||++..
T Consensus 392 ~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 392 WIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp TEEEEEETTSEEEEEEECH
T ss_pred CEEEEEECCCCEEEeEccc
Confidence 899999999999999974
No 89
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.3e-18 Score=193.27 Aligned_cols=176 Identities=13% Similarity=0.179 Sum_probs=129.0
Q ss_pred CEEEEEECC--CCeEEEEEe---CCCCEEEEEecC--CeEEEEeC-CeEEEEECCCCceeE----EEEecCCcccCCCCc
Q 004255 173 TAVRFYSFQ--SHCYEHVLR---FRSSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKF----SVLTYPVPQLAGQGA 240 (765)
Q Consensus 173 ~tV~lWdlk--tg~~v~tL~---~~s~V~sV~~s~--~~LaV~~~-~~I~iwD~~t~~~l~----tl~t~p~p~~~~~~~ 240 (765)
++|+|||+. +++.+..+. +...|.++++++ ++|+++.. +.|++||+.+++... .+..|..+
T Consensus 125 g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~------- 197 (450)
T 2vdu_B 125 KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSM------- 197 (450)
T ss_dssp TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSC-------
T ss_pred CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCc-------
Confidence 689999999 899888884 457899999987 57777654 679999998876433 33333321
Q ss_pred cccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeeccccccc
Q 004255 241 VGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 320 (765)
Q Consensus 241 ~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~ 320 (765)
...++++| +. .++.
T Consensus 198 ------v~~~~~sp-------~~-------------------------~~~~---------------------------- 211 (450)
T 2vdu_B 198 ------LTDVHLIK-------DS-------------------------DGHQ---------------------------- 211 (450)
T ss_dssp ------EEEEEEEE-------CT-------------------------TSCE----------------------------
T ss_pred ------eEEEEEcC-------CC-------------------------CCCc----------------------------
Confidence 12233322 10 0000
Q ss_pred CCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255 321 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (765)
Q Consensus 321 ~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~-~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi 399 (765)
.+++++.||.|+|||+.+++.+.. +.+|..+|.+++|+ +|++|++++.|+ .|+|||+
T Consensus 212 --------------------~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~-~v~vwd~ 269 (450)
T 2vdu_B 212 --------------------FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDD-KIFAWDW 269 (450)
T ss_dssp --------------------EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSS-EEEEEET
T ss_pred --------------------EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCC-eEEEEEC
Confidence 012345688999999999988887 66999999999999 999999999966 5999999
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecc-----------------------cccccEEEEEEccCCCEEEEEe-CCCcE
Q 004255 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRG-----------------------ITSATIQDICFSHYSQWIAIVS-SKGTC 455 (765)
Q Consensus 400 ~~~~~~~~sG~~~~~~~~s~~~l~~l~rG-----------------------~~~a~I~slaFSpDg~~Las~S-~dgTV 455 (765)
.. | ..+..+..+ .....|.+|+|+||+++|++++ .|++|
T Consensus 270 ~~-------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i 332 (450)
T 2vdu_B 270 KT-------G----------KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCI 332 (450)
T ss_dssp TT-------C----------CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEE
T ss_pred CC-------C----------cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeE
Confidence 65 3 244444311 1123589999999999999999 89999
Q ss_pred EEEeC
Q 004255 456 HVFVL 460 (765)
Q Consensus 456 hIwdl 460 (765)
+||++
T Consensus 333 ~iw~~ 337 (450)
T 2vdu_B 333 IILEM 337 (450)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99999
No 90
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.83 E-value=8.2e-19 Score=191.29 Aligned_cols=249 Identities=10% Similarity=0.026 Sum_probs=175.0
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC------cceEeeeeccCCEEEEEEecCCCCCCCCC
Q 004255 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS------NFNELVSKRDGPVSFLQMQPFPVKDDGCE 124 (765)
Q Consensus 52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g------~~~ells~~dg~V~~v~~lP~p~~~~~~d 124 (765)
..++++.|..+.|... .+++|++|..+| ++|||+...+ +....+..|.++|.++++.|+.
T Consensus 77 ~~~h~~~V~~~~~~p~------~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~------- 143 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPH------NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA------- 143 (402)
T ss_dssp BCCCSSCEEEEEECTT------CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB-------
T ss_pred EecCCCCEEEEEeCCC------CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC-------
Confidence 3457888998888652 256888888877 9999996532 4566788899999999999741
Q ss_pred CccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE--e-CCCCEEEEEec
Q 004255 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL--R-FRSSVCMVRCS 201 (765)
Q Consensus 125 ~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL--~-~~s~V~sV~~s 201 (765)
..+|++.+. +++|++||+++++.+.++ . +...|.+++++
T Consensus 144 -----~~~l~s~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 144 -----QNVLLSAGC---------------------------------DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185 (402)
T ss_dssp -----TTEEEEEET---------------------------------TSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC
T ss_pred -----CCEEEEEcC---------------------------------CCEEEEEECCCCCccEEEecCCCCCceEEEEEC
Confidence 126654221 368999999999999999 4 45689999998
Q ss_pred C--CeEEEEe-CCeEEEEECCCCceeEEE-EecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCC
Q 004255 202 P--RIVAVGL-ATQIYCFDALTLENKFSV-LTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQ 275 (765)
Q Consensus 202 ~--~~LaV~~-~~~I~iwD~~t~~~l~tl-~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~ 275 (765)
+ ++|+++. ++.|++||+.+++.+.++ ..|... ....++++| ++|+++.
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~g~-------------- 239 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT------------RPVHAVFVSEGKILTTGF-------------- 239 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS------------SCCEEEECSTTEEEEEEE--------------
T ss_pred CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC------------cceEEEEcCCCcEEEEec--------------
Confidence 6 5676655 668999999999888877 344331 012233432 1221111
Q ss_pred CCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEE
Q 004255 276 NLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKD 355 (765)
Q Consensus 276 ~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwD 355 (765)
....+|.|+|||
T Consensus 240 --------------------------------------------------------------------~~~~d~~i~iwd 251 (402)
T 2aq5_A 240 --------------------------------------------------------------------SRMSERQVALWD 251 (402)
T ss_dssp --------------------------------------------------------------------CTTCCEEEEEEE
T ss_pred --------------------------------------------------------------------cCCCCceEEEEc
Confidence 114578999999
Q ss_pred CCCCcE-EEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccccc
Q 004255 356 FVTRAI-ISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT 433 (765)
Q Consensus 356 l~s~~~-i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~ 433 (765)
+.+++. +..+. .|...|.+++|+|+|.+|++++..++.|+|||+.. +. ..+..+....+...
T Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~-------~~---------~~~~~l~~~~~~~~ 315 (402)
T 2aq5_A 252 TKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS-------EA---------PFLHYLSMFSSKES 315 (402)
T ss_dssp TTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS-------ST---------TCEEEEEEECCSSC
T ss_pred CccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC-------CC---------cceEeecccccCCc
Confidence 998764 33333 57788999999999999976654344599999965 20 11333332223457
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 434 IQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 434 I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
|.+++|+||+.++++ .++++++|++...
T Consensus 316 v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 316 QRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp CSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred ccceEEeccccccee--cceeEEEEEcCCC
Confidence 999999999998864 6779999999863
No 91
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.83 E-value=9.5e-19 Score=192.04 Aligned_cols=268 Identities=11% Similarity=0.089 Sum_probs=163.2
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEcc--CCCcceEeeeeccCCEEEEEEecCCCCCCCCC---Cccc
Q 004255 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVE--DASNFNELVSKRDGPVSFLQMQPFPVKDDGCE---GFRK 128 (765)
Q Consensus 55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~--~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d---~f~~ 128 (765)
+...|..+.|.. .++.|++|..+| ++|||++ ..+++...+..+ .|+.+.+.|.+....... .+..
T Consensus 110 h~~~v~~~~~~~-------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~ 180 (437)
T 3gre_A 110 CSSTVTQITMIP-------NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFGKNEYAVRMRAFVNE 180 (437)
T ss_dssp CSSCEEEEEECT-------TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred CCCCEEEEEEeC-------CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcccccCceEEEEEEcC
Confidence 556677777753 356788888776 9999995 345555555444 455555544210000000 0112
Q ss_pred cCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC---CCCEEEEEecC--C
Q 004255 129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF---RSSVCMVRCSP--R 203 (765)
Q Consensus 129 srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~---~s~V~sV~~s~--~ 203 (765)
...+|++.+ .+++|++||+++++++.++.. ...|.++++++ +
T Consensus 181 ~~~~l~~~~---------------------------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 227 (437)
T 3gre_A 181 EKSLLVALT---------------------------------NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECC 227 (437)
T ss_dssp SCEEEEEEE---------------------------------TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSC
T ss_pred CCCEEEEEe---------------------------------CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCC
Confidence 233554322 136999999999999999986 47999999987 6
Q ss_pred eEEEEe-CCeEEEEECCCCceeEEEE-ecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCC
Q 004255 204 IVAVGL-ATQIYCFDALTLENKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG 281 (765)
Q Consensus 204 ~LaV~~-~~~I~iwD~~t~~~l~tl~-t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~ 281 (765)
+|+++. ++.|++||+.+++++.++. .+..+ ...+++.|.
T Consensus 228 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------v~~~~~~~~-------------------------- 268 (437)
T 3gre_A 228 VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAP-------------ITHVEVCQF-------------------------- 268 (437)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEBCTTCEE-------------EEEEEECTT--------------------------
T ss_pred EEEEEcCCCeEEEEEcCCccEEEEEecCCCCc-------------eEEEEeccc--------------------------
Confidence 777765 4579999999988777764 22211 122322210
Q ss_pred CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 004255 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (765)
Q Consensus 282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~ 361 (765)
++++ + ..++.+..||.|+|||+.+++.
T Consensus 269 ----~s~~-~------------------------------------------------~~l~s~~~dg~i~iwd~~~~~~ 295 (437)
T 3gre_A 269 ----YGKN-S------------------------------------------------VIVVGGSSKTFLTIWNFVKGHC 295 (437)
T ss_dssp ----TCTT-E------------------------------------------------EEEEEESTTEEEEEEETTTTEE
T ss_pred ----cCCC-c------------------------------------------------cEEEEEcCCCcEEEEEcCCCcE
Confidence 0000 0 0122456788899999988887
Q ss_pred EEEecc--------------------------CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC-CCC---C-
Q 004255 362 ISQFKA--------------------------HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS-GSG---N- 410 (765)
Q Consensus 362 i~~~~a--------------------------H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~-~sG---~- 410 (765)
+..+.+ |..+|.+++|+ +|.+|++++.|| .|+|||+....... ..+ .
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~~ 373 (437)
T 3gre_A 296 QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS-SIVMFSLNELSSSKAVISPSRFS 373 (437)
T ss_dssp EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT-EEEEEETTCGGGCEEEECC--CC
T ss_pred EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCC-eEEEEECCCcccceEEecccccC
Confidence 777764 55568889999 789999999966 59999996521000 000 0
Q ss_pred Ccc---ccCCcceEEE-----------EEecccccccEEEEEEccC--CCEEEEEeCCCcEEEEe
Q 004255 411 HKY---DWNSSHVHLY-----------KLHRGITSATIQDICFSHY--SQWIAIVSSKGTCHVFV 459 (765)
Q Consensus 411 ~~~---~~~~s~~~l~-----------~l~rG~~~a~I~slaFSpD--g~~Las~S~dgTVhIwd 459 (765)
... ........+. ....+ +...|.+|+|+++ +.+|++++.||+|+||+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 374 DVFIPTQVTANLTMLLRKMKRTSTHSVDDSLY-HHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEEEEEETTEEEEEEECC--------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ceEEEEEeecceEEEEEecccccccccCcccc-cccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 000 0000000000 00011 3457999999998 88999999999999995
No 92
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.83 E-value=1.1e-18 Score=185.25 Aligned_cols=257 Identities=12% Similarity=0.080 Sum_probs=165.7
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEe--eeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNEL--VSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~el--ls~~dg~V~~v~~lP~p~~~~~~d~f~~s 129 (765)
..+.+.|.-+.|.. .++.|++|..+| ++|||++. +++... +..|.+.|.++++.|+
T Consensus 49 ~~h~~~v~~~~~~~-------~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~------------- 107 (372)
T 1k8k_C 49 KEHNGQVTGVDWAP-------DSNRIVTCGTDRNAYVWTLKG-RTWKPTLVILRINRAARCVRWAPN------------- 107 (372)
T ss_dssp ECCSSCEEEEEEET-------TTTEEEEEETTSCEEEEEEET-TEEEEEEECCCCSSCEEEEEECTT-------------
T ss_pred cCCCCcccEEEEeC-------CCCEEEEEcCCCeEEEEECCC-CeeeeeEEeecCCCceeEEEECCC-------------
Confidence 45677788888865 245777777765 99999954 444333 3567889999999874
Q ss_pred CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE---EEEEe--CCCCEEEEEecC--
Q 004255 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY---EHVLR--FRSSVCMVRCSP-- 202 (765)
Q Consensus 130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~---v~tL~--~~s~V~sV~~s~-- 202 (765)
..+|++.+. +++|++||+.+++. ...+. +...|.++++++
T Consensus 108 ~~~l~~~~~---------------------------------d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 108 EKKFAVGSG---------------------------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp SSEEEEEET---------------------------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred CCEEEEEeC---------------------------------CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence 236665331 25799999988763 33442 356899999987
Q ss_pred CeEEEEe-CCeEEEEECCCCc------------------eeEEEEecCCcccCCCCccccccccceeEEccceEEEecCC
Q 004255 203 RIVAVGL-ATQIYCFDALTLE------------------NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNT 263 (765)
Q Consensus 203 ~~LaV~~-~~~I~iwD~~t~~------------------~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~ 263 (765)
++|+++. ++.|++||+.... .+..+..|..+ ...+++
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------v~~~~~----------- 210 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW-------------VHGVCF----------- 210 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC-------------EEEEEE-----------
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe-------------EEEEEE-----------
Confidence 5777765 5689999976432 11111111100 000111
Q ss_pred ceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCcccccccccc
Q 004255 264 LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGA 343 (765)
Q Consensus 264 ~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~ 343 (765)
+++++ .++
T Consensus 211 --------------------------------------------------------------------~~~~~----~l~ 218 (372)
T 1k8k_C 211 --------------------------------------------------------------------SANGS----RVA 218 (372)
T ss_dssp --------------------------------------------------------------------CSSSS----EEE
T ss_pred --------------------------------------------------------------------CCCCC----EEE
Confidence 11111 123
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC--Cc---ccCCCCCC-------
Q 004255 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP--SC---MRSGSGNH------- 411 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~--~~---~~~~sG~~------- 411 (765)
.+..||.|+|||+.+++.+..+..|..+|.+++|+|+|.+|+++ .||. |+|||+.. .. ........
T Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (372)
T 1k8k_C 219 WVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCF-PVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 296 (372)
T ss_dssp EEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSS-CEEEEEETTTTEEEECCCCCCC--------
T ss_pred EEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCe-EEEEEccCcCceEEEeeccCccccchhhhc
Confidence 45678999999999999999999999999999999999999988 5465 99999864 10 00000000
Q ss_pred --cccc---CCcceEE------EEEecccccccEEEEEEc-cCC---CEEEEEeCCCcEEEEeCCC
Q 004255 412 --KYDW---NSSHVHL------YKLHRGITSATIQDICFS-HYS---QWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 412 --~~~~---~~s~~~l------~~l~rG~~~a~I~slaFS-pDg---~~Las~S~dgTVhIwdl~~ 462 (765)
...+ +...... ..+..|+ ...|.+++|+ +|| ++|++++.||+|+||++..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 297 TARERFQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CHHHHHHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred chhhhhhhcccccccccCccccccccccc-cCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 0000 0000111 3333353 4579999965 777 9999999999999999865
No 93
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.83 E-value=3.3e-18 Score=184.43 Aligned_cols=222 Identities=11% Similarity=0.085 Sum_probs=160.9
Q ss_pred CcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCE
Q 004255 95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA 174 (765)
Q Consensus 95 g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~t 174 (765)
..+...+..|.+.|.++++.|+. ..+|++.+. +++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~------------~~~l~s~~~---------------------------------dg~ 97 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTH------------PTTVAVGSK---------------------------------GGD 97 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSC------------TTEEEEEEB---------------------------------TSC
T ss_pred cceEEeccCCCCCEEEEEECCCC------------CCEEEEEcC---------------------------------CCe
Confidence 34556677889999999999741 136665321 368
Q ss_pred EEEEECCCCeEEEEEe---CCCCEEEEEecC---CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 004255 175 VRFYSFQSHCYEHVLR---FRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (765)
Q Consensus 175 V~lWdlktg~~v~tL~---~~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (765)
|+|||+.+++....+. +...|.++++++ ++|+++. ++.|++||+.+ +.+..+..+.... ...
T Consensus 98 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~----------~~v 166 (383)
T 3ei3_B 98 IILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWD----------YWY 166 (383)
T ss_dssp EEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSS----------CCE
T ss_pred EEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCC----------CCe
Confidence 9999999999888886 457999999987 5677655 56899999986 4555555433200 011
Q ss_pred ceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (765)
Q Consensus 248 ~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~ 327 (765)
..++++| +..
T Consensus 167 ~~~~~~~-------~~~--------------------------------------------------------------- 176 (383)
T 3ei3_B 167 CCVDVSV-------SRQ--------------------------------------------------------------- 176 (383)
T ss_dssp EEEEEET-------TTT---------------------------------------------------------------
T ss_pred EEEEECC-------CCC---------------------------------------------------------------
Confidence 2233322 110
Q ss_pred CccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccC
Q 004255 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRS 406 (765)
Q Consensus 328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~~~~~~~ 406 (765)
.++.+..||.|++||+ +++.+..+.+|..+|.+++|+|+|. +|++++.|+ .|+|||+....
T Consensus 177 -------------~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~--- 238 (383)
T 3ei3_B 177 -------------MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDA-TVKLWDLRNIK--- 238 (383)
T ss_dssp -------------EEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTS-EEEEEEGGGCC---
T ss_pred -------------EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCC-EEEEEeCCCCC---
Confidence 0123456899999999 5788899999999999999999999 999999966 59999996410
Q ss_pred CCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 407 ~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp-Dg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
.....+..+ + +...|.+++|+| |+++|++++.|++|+|||+........+..|.
T Consensus 239 ----------~~~~~~~~~--~-~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 239 ----------DKNSYIAEM--P-HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp ----------STTCEEEEE--E-CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred ----------cccceEEEe--c-CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence 001344444 2 345799999999 99999999999999999999877666666664
No 94
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.82 E-value=1.8e-19 Score=199.60 Aligned_cols=220 Identities=14% Similarity=0.154 Sum_probs=151.1
Q ss_pred ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 004255 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (765)
Q Consensus 97 ~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~ 176 (765)
+......|+..|.+|+|.|. ...+||+.+ .+++|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~------------~~~~lasGs---------------------------------~dg~i~ 145 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPT------------HPSTVAVGS---------------------------------KGGDIM 145 (435)
T ss_dssp SCCEEEECSSCEEEEEECSS------------CTTCEEEEE---------------------------------TTSCEE
T ss_pred ecccCCCCCCCEEEEEEeCC------------CCCEEEEEe---------------------------------CCCEEE
Confidence 34556778889999999973 112666522 136899
Q ss_pred EEECCCCeEEEEEeC---CCCEEEEEecC---CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 004255 177 FYSFQSHCYEHVLRF---RSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 249 (765)
Q Consensus 177 lWdlktg~~v~tL~~---~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~ 249 (765)
|||+.+++....+.+ .+.|.+|+|+| ++|+++. ++.|+|||+.+.. ...+..+... ......
T Consensus 146 lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~----------~~~~~~ 214 (435)
T 4e54_B 146 LWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI-LRVFASSDTI----------NIWFCS 214 (435)
T ss_dssp EECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE-EEEEECCSSC----------SCCCCC
T ss_pred EEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc-eeEEeccCCC----------CccEEE
Confidence 999998876666653 46899999985 5777665 5689999998653 3333321110 000112
Q ss_pred eEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCc
Q 004255 250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV 329 (765)
Q Consensus 250 ~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~ 329 (765)
+++++ +. .
T Consensus 215 ~~~~~-------~~---------------------------~-------------------------------------- 222 (435)
T 4e54_B 215 LDVSA-------SS---------------------------R-------------------------------------- 222 (435)
T ss_dssp EEEET-------TT---------------------------T--------------------------------------
T ss_pred EEECC-------CC---------------------------C--------------------------------------
Confidence 22221 10 0
Q ss_pred cCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCC
Q 004255 330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGS 408 (765)
Q Consensus 330 s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~~~~~~~~s 408 (765)
.++.++.||.|+|||+.. +.+..+.+|..+|.+|+|+|++. +|++++.|+ .|+|||+....
T Consensus 223 -----------~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~-~v~iwd~~~~~----- 284 (435)
T 4e54_B 223 -----------MVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQ-TVKIWDLRQVR----- 284 (435)
T ss_dssp -----------EEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTS-BCCEEETTTCC-----
T ss_pred -----------EEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcc-eeeEEeccccc-----
Confidence 112346789999999864 56778999999999999999986 788999966 59999996521
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 409 G~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
.. ..+. ...+ +...|++++|+|||++|++++.||+|+|||+........+..|.
T Consensus 285 ~~---------~~~~-~~~~-h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 338 (435)
T 4e54_B 285 GK---------ASFL-YSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP 338 (435)
T ss_dssp SS---------SCCS-BCCB-CSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred cc---------ceEE-Eeee-ccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence 00 0111 1123 34579999999999999999999999999999877666666664
No 95
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.82 E-value=5.9e-19 Score=189.17 Aligned_cols=223 Identities=15% Similarity=0.194 Sum_probs=161.9
Q ss_pred cEEEEEccCCCcceEeeeeccCCEEEEEEec-CCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCC
Q 004255 85 GFQVLDVEDASNFNELVSKRDGPVSFLQMQP-FPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDS 163 (765)
Q Consensus 85 G~qVWdv~~~g~~~ells~~dg~V~~v~~lP-~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~ 163 (765)
.++||+++ .++..+++..|.++|.++++.| + ..+||+.+.
T Consensus 24 ~~~v~~~~-~~~~~~~~~~h~~~v~~~~~s~~~-------------~~~l~~~~~------------------------- 64 (408)
T 4a11_B 24 TRRVLGLE-LNKDRDVERIHGGGINTLDIEPVE-------------GRYMLSGGS------------------------- 64 (408)
T ss_dssp HHHHHTEE-ECTTEEECCCCSSCEEEEEECTTT-------------CCEEEEEET-------------------------
T ss_pred cceeeccc-cCcceeeeeccCCcEEEEEEecCC-------------CCEEEEEcC-------------------------
Confidence 47888885 4667888999999999999997 4 236665321
Q ss_pred CCCCCCCCCCEEEEEECCCCeEEEEEe--------------CCCCEEEEEecC---CeEEEEe-CCeEEEEECCCCceeE
Q 004255 164 QSGNCVNSPTAVRFYSFQSHCYEHVLR--------------FRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKF 225 (765)
Q Consensus 164 ~~~~~~~~p~tV~lWdlktg~~v~tL~--------------~~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~t~~~l~ 225 (765)
+++|++||+.+++....+. +...|.++++++ ++|+++. ++.|++||+.+++...
T Consensus 65 --------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 136 (408)
T 4a11_B 65 --------DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD 136 (408)
T ss_dssp --------TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEE
T ss_pred --------CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccce
Confidence 3689999999987666554 557999999987 4676655 6789999999988766
Q ss_pred EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhh
Q 004255 226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (765)
Q Consensus 226 tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~l 305 (765)
.+.. +.+ ...+++.+ .. +. +.
T Consensus 137 ~~~~-~~~-------------~~~~~~~~-------~~------------------------~~-~~------------- 157 (408)
T 4a11_B 137 VFNF-EET-------------VYSHHMSP-------VS------------------------TK-HC------------- 157 (408)
T ss_dssp EEEC-SSC-------------EEEEEECS-------SC------------------------SS-CC-------------
T ss_pred eccC-CCc-------------eeeeEeec-------CC------------------------CC-Cc-------------
Confidence 6542 211 11122211 00 00 00
Q ss_pred hcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EE
Q 004255 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LL 384 (765)
Q Consensus 306 a~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~-lL 384 (765)
.++.+..+|.|++||+.+++.+..+.+|..+|.+++|+|+|. +|
T Consensus 158 -----------------------------------~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll 202 (408)
T 4a11_B 158 -----------------------------------LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYIL 202 (408)
T ss_dssp -----------------------------------EEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEE
T ss_pred -----------------------------------EEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEE
Confidence 012345688999999999999999999999999999999999 69
Q ss_pred EEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-------------cccccccEEEEEEccCCCEEEEEeC
Q 004255 385 VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-------------RGITSATIQDICFSHYSQWIAIVSS 451 (765)
Q Consensus 385 ATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~-------------rG~~~a~I~slaFSpDg~~Las~S~ 451 (765)
++++.||. |++||+.... ..+..+. ...+...|.+++|+||+++|++++.
T Consensus 203 ~~~~~dg~-i~i~d~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 203 ATASADSR-VKLWDVRRAS----------------GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp EEEETTSC-EEEEETTCSS----------------CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEcCCCc-EEEEECCCCC----------------cccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 99999775 9999996521 0111110 0113356999999999999999999
Q ss_pred CCcEEEEeCCCCCC
Q 004255 452 KGTCHVFVLSPFGG 465 (765)
Q Consensus 452 dgTVhIwdl~~~gg 465 (765)
||+|++||+.....
T Consensus 266 dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 266 DNRMRLWNSSNGEN 279 (408)
T ss_dssp TSCEEEEETTTCCB
T ss_pred CCeEEEEECCCCcc
Confidence 99999999987543
No 96
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.82 E-value=1.1e-18 Score=182.09 Aligned_cols=225 Identities=14% Similarity=0.175 Sum_probs=158.9
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (765)
Q Consensus 74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~ 152 (765)
+++.|+++..++ +.+|+.......... ..|.++|.++++.|+ ..+|++ ++
T Consensus 20 dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~-------------~~~l~~-~~-------------- 70 (337)
T 1gxr_A 20 DGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNP-------------TRHVYT-GG-------------- 70 (337)
T ss_dssp SSCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECSS-------------SSEEEE-EC--------------
T ss_pred CCCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEecC-------------CcEEEE-cC--------------
Confidence 466777776544 666655433323333 368889999999874 236654 22
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE---EEEEe---CCCCEEEEEecC--CeEEEEe-CCeEEEEECCCCc-
Q 004255 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY---EHVLR---FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLE- 222 (765)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~---v~tL~---~~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~- 222 (765)
+++|++||+.+++. +..+. +...|.++++++ ++|+++. ++.|++||+.+++
T Consensus 71 -------------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 131 (337)
T 1gxr_A 71 -------------------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131 (337)
T ss_dssp -------------------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--
T ss_pred -------------------CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc
Confidence 25899999987753 34443 456899999997 5677655 5689999999876
Q ss_pred -eeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhh
Q 004255 223 -NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH 301 (765)
Q Consensus 223 -~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~ 301 (765)
....+..+..+ ...++++| +. .
T Consensus 132 ~~~~~~~~~~~~-------------i~~~~~~~-------~~---------------------------~---------- 154 (337)
T 1gxr_A 132 RIKAELTSSAPA-------------CYALAISP-------DS---------------------------K---------- 154 (337)
T ss_dssp EEEEEEECSSSC-------------EEEEEECT-------TS---------------------------S----------
T ss_pred ceeeecccCCCc-------------eEEEEECC-------CC---------------------------C----------
Confidence 33333333221 12233322 10 0
Q ss_pred hhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC
Q 004255 302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG 381 (765)
Q Consensus 302 ~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG 381 (765)
.++.+..+|.|++||+.+++.+..+.+|..+|.+++|+|+|
T Consensus 155 ---------------------------------------~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 195 (337)
T 1gxr_A 155 ---------------------------------------VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG 195 (337)
T ss_dssp ---------------------------------------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred ---------------------------------------EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC
Confidence 01123467899999999999999999999999999999999
Q ss_pred CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 382 ~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
++|++++.|| .|++||+.. + ..+..+. +...|.+++|+||+++|++++.|++|++|++.
T Consensus 196 ~~l~~~~~dg-~i~~~d~~~-------~----------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 196 TKLWTGGLDN-TVRSWDLRE-------G----------RQLQQHD---FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp SEEEEEETTS-EEEEEETTT-------T----------EEEEEEE---CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CEEEEEecCC-cEEEEECCC-------C----------ceEeeec---CCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 9999999966 599999964 2 3444443 23569999999999999999999999999997
Q ss_pred CC
Q 004255 462 PF 463 (765)
Q Consensus 462 ~~ 463 (765)
..
T Consensus 255 ~~ 256 (337)
T 1gxr_A 255 KP 256 (337)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 97
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.82 E-value=2e-17 Score=178.18 Aligned_cols=223 Identities=15% Similarity=0.098 Sum_probs=162.9
Q ss_pred CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
+.++++|..++ +++||++ .+++...+..+. .+.++++.|+ ...|++....
T Consensus 2 ~~l~vs~~~d~~v~v~d~~-~~~~~~~~~~~~-~~~~~~~s~d-------------g~~l~~~~~~-------------- 52 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVT-SNKVTATIPVGS-NPMGAVISPD-------------GTKVYVANAH-------------- 52 (391)
T ss_dssp EEEEEEETTTTEEEEEETT-TTEEEEEEECSS-SEEEEEECTT-------------SSEEEEEEGG--------------
T ss_pred CEEEEEcCCCCEEEEEECC-CCeEEEEeecCC-CcceEEECCC-------------CCEEEEECCC--------------
Confidence 45788887765 9999995 567777776665 4889999874 2255443321
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEe
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~--~~~I~iwD~~t~~~l~tl~t 229 (765)
+++|++||+.+++.+..+..+..|.++++++ +.|+++. ++.|++||+.+++.+..+..
T Consensus 53 ------------------d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~ 114 (391)
T 1l0q_A 53 ------------------SNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT 114 (391)
T ss_dssp ------------------GTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ------------------CCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC
Confidence 2689999999999999999988999999987 5565543 36899999999987776654
Q ss_pred cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhc
Q 004255 230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (765)
Q Consensus 230 ~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~ 307 (765)
+.. ...++++| ++|++
T Consensus 115 ~~~--------------~~~~~~s~dg~~l~~------------------------------------------------ 132 (391)
T 1l0q_A 115 GKS--------------PLGLALSPDGKKLYV------------------------------------------------ 132 (391)
T ss_dssp SSS--------------EEEEEECTTSSEEEE------------------------------------------------
T ss_pred CCC--------------cceEEECCCCCEEEE------------------------------------------------
Confidence 322 12234432 11111
Q ss_pred ccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEE
Q 004255 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTA 387 (765)
Q Consensus 308 G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATa 387 (765)
.+..++.|++||+.+++.+..+..|. .+.+++|+|+|++|+.+
T Consensus 133 ------------------------------------~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~ 175 (391)
T 1l0q_A 133 ------------------------------------TNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVA 175 (391)
T ss_dssp ------------------------------------EETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEE
T ss_pred ------------------------------------EeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEE
Confidence 12357899999999999998888774 56999999999988544
Q ss_pred EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe---CCCcEEEEeCCCC
Q 004255 388 SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS---SKGTCHVFVLSPF 463 (765)
Q Consensus 388 S~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S---~dgTVhIwdl~~~ 463 (765)
+.++..|++||+.. + ..+..+.. ...+.+++|+|||++|++++ .+++|++||+...
T Consensus 176 ~~~~~~v~~~d~~~-------~----------~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 176 NFDSMSISVIDTVT-------N----------SVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp ETTTTEEEEEETTT-------T----------EEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred eCCCCEEEEEECCC-------C----------eEEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 44456799999865 2 34444432 24689999999999999998 6899999999754
No 98
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.81 E-value=9.2e-20 Score=195.50 Aligned_cols=199 Identities=13% Similarity=0.110 Sum_probs=126.6
Q ss_pred CEEEEEECCCC--eEEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCc---eeEEEEecCCcccCCCCcccc
Q 004255 173 TAVRFYSFQSH--CYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLE---NKFSVLTYPVPQLAGQGAVGI 243 (765)
Q Consensus 173 ~tV~lWdlktg--~~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~---~l~tl~t~p~p~~~~~~~~~~ 243 (765)
++|+|||+.++ +.+.++..+ ..|.++++++ ++|+++. ++.|++||+.+++ ....+..|..+
T Consensus 33 ~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~---------- 102 (377)
T 3dwl_C 33 NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRA---------- 102 (377)
T ss_dssp SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSC----------
T ss_pred CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCc----------
Confidence 68999999998 677777654 6899999987 5777765 5689999998876 23333233221
Q ss_pred ccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCC
Q 004255 244 NVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 323 (765)
Q Consensus 244 ~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~ 323 (765)
...++++| +. .
T Consensus 103 ---v~~~~~~~-------~~---------------------------~-------------------------------- 113 (377)
T 3dwl_C 103 ---ATFVRWSP-------NE---------------------------D-------------------------------- 113 (377)
T ss_dssp ---EEEEECCT-------TS---------------------------S--------------------------------
T ss_pred ---eEEEEECC-------CC---------------------------C--------------------------------
Confidence 11122211 10 0
Q ss_pred CCCCCccCCCccccccccccccCCCCeEEEEECCCCc---EEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255 324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---IISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (765)
Q Consensus 324 ~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~---~i~~~~a-H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi 399 (765)
.++.+..||.|+|||+.+++ .+..+.. |..+|.+++|+|+|++||+++.||+ |+|||+
T Consensus 114 -----------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~-i~iwd~ 175 (377)
T 3dwl_C 114 -----------------KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK-AYVLSA 175 (377)
T ss_dssp -----------------CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC-EEEEEE
T ss_pred -----------------EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE-EEEEEE
Confidence 11234568899999999887 4778887 9999999999999999999999775 999998
Q ss_pred CCCcccCCCCCCccccCC---cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC----Ccccccc
Q 004255 400 MPSCMRSGSGNHKYDWNS---SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG----DSGFQTL 472 (765)
Q Consensus 400 ~~~~~~~~sG~~~~~~~~---s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg----~~~~~~h 472 (765)
....... ......|.. ....+..+ + +...|.+++|+||+++|++++.||+|+|||+..... ...+..|
T Consensus 176 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~-~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 250 (377)
T 3dwl_C 176 YVRDVDA--KPEASVWGSRLPFNTVCAEY--P-SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS 250 (377)
T ss_dssp CCSSCC---CCCSCSSCSCCCEEEEEECC--C-CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS
T ss_pred EecccCC--Cccccccccccchhhhhhcc--c-CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC
Confidence 5310000 000000100 11233333 3 445799999999999999999999999999987655 3344455
Q ss_pred c
Q 004255 473 S 473 (765)
Q Consensus 473 ~ 473 (765)
.
T Consensus 251 ~ 251 (377)
T 3dwl_C 251 Q 251 (377)
T ss_dssp S
T ss_pred C
Confidence 3
No 99
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.81 E-value=5.6e-18 Score=178.14 Aligned_cols=237 Identities=13% Similarity=0.181 Sum_probs=169.5
Q ss_pred CCCCcEEEEEEeeccCCCCCCCe-EEEEEecCc-EEEEEc-cCCCcceEeeee--ccCCEEEEEEecCCCCCCCCCCccc
Q 004255 54 DLKDQVTWAGFDRLEYGPSVFKQ-VLLLGYQNG-FQVLDV-EDASNFNELVSK--RDGPVSFLQMQPFPVKDDGCEGFRK 128 (765)
Q Consensus 54 ~~~~~v~w~~fd~l~~~~~~~~~-vL~~G~~~G-~qVWdv-~~~g~~~ells~--~dg~V~~v~~lP~p~~~~~~d~f~~ 128 (765)
.+.+.|..+.|.. .++ .|++|..+| +++||+ +. +.. ..+.. |.++|..+++.| .
T Consensus 54 ~~~~~v~~~~~~~-------~~~~~l~~~~~dg~i~~wd~~~~-~~~-~~~~~~~~~~~v~~l~~~~-~----------- 112 (342)
T 1yfq_A 54 RYKHPLLCCNFID-------NTDLQIYVGTVQGEILKVDLIGS-PSF-QALTNNEANLGICRICKYG-D----------- 112 (342)
T ss_dssp ECSSCEEEEEEEE-------SSSEEEEEEETTSCEEEECSSSS-SSE-EECBSCCCCSCEEEEEEET-T-----------
T ss_pred ecCCceEEEEECC-------CCCcEEEEEcCCCeEEEEEeccC-Cce-EeccccCCCCceEEEEeCC-C-----------
Confidence 3566777777765 256 777777665 999999 64 434 56677 899999999986 2
Q ss_pred cCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC---------CeEEEEEeCCCCEEEEE
Q 004255 129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS---------HCYEHVLRFRSSVCMVR 199 (765)
Q Consensus 129 srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlkt---------g~~v~tL~~~s~V~sV~ 199 (765)
.+|++.+. +++|++||+++ ++++.++.+...|.+++
T Consensus 113 --~~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 157 (342)
T 1yfq_A 113 --DKLIAASW---------------------------------DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD 157 (342)
T ss_dssp --TEEEEEET---------------------------------TSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred --CEEEEEcC---------------------------------CCeEEEEcccccccccccccCCeeeEEeeCCceEEEE
Confidence 25554221 36899999998 88787888788999999
Q ss_pred ecCCeEEEEe-CCeEEEEECCC-CceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCC
Q 004255 200 CSPRIVAVGL-ATQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNL 277 (765)
Q Consensus 200 ~s~~~LaV~~-~~~I~iwD~~t-~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~l 277 (765)
+++..|+++. ++.|++||+.+ ++........+.. .....++++|. +.
T Consensus 158 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-----------~~i~~i~~~~~------~~-------------- 206 (342)
T 1yfq_A 158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK-----------YQIRDVALLPK------EQ-------------- 206 (342)
T ss_dssp ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCS-----------SCEEEEEECSG------GG--------------
T ss_pred ecCCcEEEEeCCCeEEEEECCccccccceeeecCCC-----------CceeEEEECCC------CC--------------
Confidence 9997777765 45899999988 6543322221110 00122222210 10
Q ss_pred CCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC
Q 004255 278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV 357 (765)
Q Consensus 278 t~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~ 357 (765)
. .++.+..+|.|+|||+.
T Consensus 207 -------------~-------------------------------------------------~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 207 -------------E-------------------------------------------------GYACSSIDGRVAVEFFD 224 (342)
T ss_dssp -------------C-------------------------------------------------EEEEEETTSEEEEEECC
T ss_pred -------------C-------------------------------------------------EEEEEecCCcEEEEEEc
Confidence 0 01133468899999998
Q ss_pred CC------cEEEEeccCCC---------CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 358 TR------AIISQFKAHTS---------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 358 s~------~~i~~~~aH~~---------~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
.. +.+..+++|.. +|.+++|+|+|++|++++.||. |+|||+.. + ..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~~~-------~----------~~~ 286 (342)
T 1yfq_A 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQT-------R----------KKI 286 (342)
T ss_dssp TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTT-------T----------EEE
T ss_pred CCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcCcc-------H----------hHh
Confidence 87 77888888866 9999999999999999999775 99999965 3 456
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCc-EEEEeC
Q 004255 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGT-CHVFVL 460 (765)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~dgT-VhIwdl 460 (765)
..+. +++...|.+++ ||+++|++++.||+ .+.|..
T Consensus 287 ~~~~-~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 287 KNFA-KFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EECC-CCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred hhhh-cccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 6654 44356799999 99999999999999 666554
No 100
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.81 E-value=9.4e-19 Score=185.81 Aligned_cols=208 Identities=14% Similarity=0.135 Sum_probs=141.6
Q ss_pred eEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 004255 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (765)
Q Consensus 98 ~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~l 177 (765)
+.++..|.++|.++++.|+ ..+||+.+. +++|+|
T Consensus 6 ~~~~~~H~~~V~~v~~s~~-------------g~~lasgs~---------------------------------D~~v~l 39 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYY-------------GTRLATCSS---------------------------------DRSVKI 39 (316)
T ss_dssp --------CCEEEEEECGG-------------GCEEEEEET---------------------------------TTEEEE
T ss_pred eeecccccCeEEEeeEcCC-------------CCEEEEEeC---------------------------------CCeEEE
Confidence 4567789999999999874 236665321 369999
Q ss_pred EECCCCe--EEEEEeCC-CCEEEEEecC----CeEEEEe-CCeEEEEECCCCc--eeEEEEecCCcccCCCCcccccccc
Q 004255 178 YSFQSHC--YEHVLRFR-SSVCMVRCSP----RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGY 247 (765)
Q Consensus 178 Wdlktg~--~v~tL~~~-s~V~sV~~s~----~~LaV~~-~~~I~iwD~~t~~--~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (765)
||+++++ ++.+++.+ ..|++|++++ ++|+++. +++|++||+.+++ ...++..|..+ .
T Consensus 40 wd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~-------------V 106 (316)
T 3bg1_A 40 FDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSS-------------V 106 (316)
T ss_dssp EEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSC-------------C
T ss_pred EEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCc-------------e
Confidence 9999875 46677754 6999999963 5777655 5689999998864 44444444431 1
Q ss_pred ceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (765)
Q Consensus 248 ~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~ 327 (765)
..++++| +. .+.
T Consensus 107 ~~v~~~p-------~~--------------------------~g~----------------------------------- 118 (316)
T 3bg1_A 107 NSVCWAP-------HD--------------------------YGL----------------------------------- 118 (316)
T ss_dssp CEEEECC-------TT--------------------------TCS-----------------------------------
T ss_pred EEEEECC-------CC--------------------------CCc-----------------------------------
Confidence 2333322 10 000
Q ss_pred CccCCCccccccccccccCCCCeEEEEECCCCc---EEEEeccCCCCeEEEEECCC-----------------CCEEEEE
Q 004255 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---IISQFKAHTSPISALCFDPS-----------------GTLLVTA 387 (765)
Q Consensus 328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~---~i~~~~aH~~~IsaLaFSpd-----------------G~lLATa 387 (765)
.++.++.||+|+|||+..+. ....+.+|..+|.+++|+|+ +++||+|
T Consensus 119 -------------~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 185 (316)
T 3bg1_A 119 -------------ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG 185 (316)
T ss_dssp -------------CEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECC
T ss_pred -------------EEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEe
Confidence 12245678999999998763 24567899999999999998 5799999
Q ss_pred EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC----CEEEEEeCCCcEEEEeCCC
Q 004255 388 SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS----QWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 388 S~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg----~~Las~S~dgTVhIwdl~~ 462 (765)
+.|++ |+|||+... + ....+..+ .|+ ...|.+++|+||+ ++||+++.|++|+||++..
T Consensus 186 s~D~~-v~lWd~~~~------~--------~~~~~~~l-~~h-~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 186 GCDNL-IKLWKEEED------G--------QWKEEQKL-EAH-SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp BTTSB-CCEEEECTT------S--------CEEEEECC-BCC-SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cCCCe-EEEEEeCCC------C--------ccceeeec-ccC-CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 99664 999998431 1 00233444 343 4579999999997 8999999999999999875
No 101
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.81 E-value=3.1e-18 Score=185.28 Aligned_cols=116 Identities=14% Similarity=0.219 Sum_probs=82.9
Q ss_pred cccCCCCe-EEEEECCCCcEEEEec-c-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCC---CC-----CC
Q 004255 343 ADMDNAGI-VVVKDFVTRAIISQFK-A-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG---SG-----NH 411 (765)
Q Consensus 343 ~~~~~dG~-V~IwDl~s~~~i~~~~-a-H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~---sG-----~~ 411 (765)
++++.||+ |+|||+.+++.+..|. + |..+|.+++|+|||++||+++.|+ .|+|||+........ .+ ..
T Consensus 211 ~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~-~v~iw~~~~~~~~~~~~~~~~~~~~~~ 289 (355)
T 3vu4_A 211 ATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKW-TLHVFEIFNDQDNKRHALKGWINMKYF 289 (355)
T ss_dssp EEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTC-EEEEEESSCCSCCCSEETTTTEECCCC
T ss_pred EEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCC-EEEEEEccCCCCcccccccceeecccc
Confidence 34567898 9999999999999998 5 999999999999999999999965 599999964210000 00 00
Q ss_pred ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 412 ~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
...|+ ...+.+..+ .......++|++||++|++++.||++++|++...
T Consensus 290 ~~~~~---~~~~~~~~~-~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 290 QSEWS---LCNFKLSVD-KHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CCSSC---SEEEECCCC-TTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ccccc---eeEEEeccC-CCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 00000 111222221 1122466999999999999999999999999754
No 102
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.81 E-value=6.4e-17 Score=176.67 Aligned_cols=226 Identities=8% Similarity=0.034 Sum_probs=165.3
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (765)
Q Consensus 74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~ 152 (765)
.+++|+++..++ +++||++ .+++...+..+...+..+++.|+ ...|+++...
T Consensus 180 ~~~~~~s~~~d~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~------------- 232 (433)
T 3bws_A 180 HNELWVSQMQANAVHVFDLK-TLAYKATVDLTGKWSKILLYDPI-------------RDLVYCSNWI------------- 232 (433)
T ss_dssp GTEEEEEEGGGTEEEEEETT-TCCEEEEEECSSSSEEEEEEETT-------------TTEEEEEETT-------------
T ss_pred CCEEEEEECCCCEEEEEECC-CceEEEEEcCCCCCeeEEEEcCC-------------CCEEEEEecC-------------
Confidence 367888888765 9999995 56677777778889999999874 2255443211
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe---------CCeEEEEECCCC
Q 004255 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL---------ATQIYCFDALTL 221 (765)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~---------~~~I~iwD~~t~ 221 (765)
+++|++||+++++.+..+.....+..+++++ +.|+++. ++.|++||+.++
T Consensus 233 -------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~ 293 (433)
T 3bws_A 233 -------------------SEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE 293 (433)
T ss_dssp -------------------TTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred -------------------CCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence 3689999999999999998888899999987 5677655 457999999998
Q ss_pred ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhh
Q 004255 222 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH 301 (765)
Q Consensus 222 ~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~ 301 (765)
+.+..+.. +. .++.+++..+. ..+
T Consensus 294 ~~~~~~~~-~~--------------------~~~~~~~~~~g---------------------------~~l-------- 317 (433)
T 3bws_A 294 KLIDTIGP-PG--------------------NKRHIVSGNTE---------------------------NKI-------- 317 (433)
T ss_dssp EEEEEEEE-EE--------------------CEEEEEECSST---------------------------TEE--------
T ss_pred cEEeeccC-CC--------------------CcceEEECCCC---------------------------CEE--------
Confidence 76655421 11 01122222211 000
Q ss_pred hhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC
Q 004255 302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG 381 (765)
Q Consensus 302 ~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG 381 (765)
.+.+..+|.|++||+.+++.+..+. |...+.+++|+|+|
T Consensus 318 ----------------------------------------~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg 356 (433)
T 3bws_A 318 ----------------------------------------YVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDG 356 (433)
T ss_dssp ----------------------------------------EEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTS
T ss_pred ----------------------------------------EEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCC
Confidence 0122457899999999999888876 67789999999999
Q ss_pred CEEEEEEcCC--------------CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 004255 382 TLLVTASVYG--------------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (765)
Q Consensus 382 ~lLATaS~dG--------------t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~La 447 (765)
++|++++.+. ..|++||+.. + ..+..+.. ...+.+++|+|||++|+
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-------~----------~~~~~~~~---~~~~~~~~~s~dg~~l~ 416 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-------D----------TVKEFWEA---GNQPTGLDVSPDNRYLV 416 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT-------T----------EEEEEEEC---SSSEEEEEECTTSCEEE
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCC-------C----------cEEEEecC---CCCCceEEEcCCCCEEE
Confidence 9999888742 2699999854 3 34555542 24589999999999999
Q ss_pred EEeC-CCcEEEEeCCC
Q 004255 448 IVSS-KGTCHVFVLSP 462 (765)
Q Consensus 448 s~S~-dgTVhIwdl~~ 462 (765)
+++. |++|+||+++.
T Consensus 417 ~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 417 ISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEETTTTEEEEEEETT
T ss_pred EEECCCCeEEEEEecC
Confidence 8875 99999999874
No 103
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=5.4e-18 Score=179.79 Aligned_cols=212 Identities=14% Similarity=0.167 Sum_probs=149.9
Q ss_pred cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEE
Q 004255 96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV 175 (765)
Q Consensus 96 ~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV 175 (765)
++..++..|.++|.++++.|+ ..+||+.+. +++|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~-------------~~~l~~~~~---------------------------------dg~i 35 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYY-------------GKRLATCSS---------------------------------DKTI 35 (379)
T ss_dssp ---CCEEECCCCEEEEEECSS-------------SSEEEEEET---------------------------------TSCE
T ss_pred CccEEecCCcccEEEEEEcCC-------------CCEEEEEEC---------------------------------CCcE
Confidence 456788999999999999974 236665321 3589
Q ss_pred EEEECC--CCeEEEEEeCC-CCEEEEEec----CCeEEEEe-CCeEEEEECCCCc--eeEEEEecCCcccCCCCcccccc
Q 004255 176 RFYSFQ--SHCYEHVLRFR-SSVCMVRCS----PRIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINV 245 (765)
Q Consensus 176 ~lWdlk--tg~~v~tL~~~-s~V~sV~~s----~~~LaV~~-~~~I~iwD~~t~~--~l~tl~t~p~p~~~~~~~~~~~~ 245 (765)
+|||+. +++.+..+..+ ..|.+++++ .++|+++. ++.|++||+.+++ .+..+..|..+
T Consensus 36 ~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------------ 103 (379)
T 3jrp_A 36 KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS------------ 103 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC------------
T ss_pred EEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcc------------
Confidence 999998 66777788754 689999997 46777765 5679999999886 33443333321
Q ss_pred ccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCC
Q 004255 246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (765)
Q Consensus 246 ~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s 325 (765)
...++++| +.. +.
T Consensus 104 -v~~~~~~~-------~~~--------------------------~~--------------------------------- 116 (379)
T 3jrp_A 104 -VNSVQWAP-------HEY--------------------------GP--------------------------------- 116 (379)
T ss_dssp -EEEEEECC-------GGG--------------------------CS---------------------------------
T ss_pred -eEEEEeCC-------CCC--------------------------CC---------------------------------
Confidence 12233322 100 00
Q ss_pred CCCccCCCccccccccccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEECC-------------CCCEEEEEEcC
Q 004255 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDP-------------SGTLLVTASVY 390 (765)
Q Consensus 326 ~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~--~i~~~~aH~~~IsaLaFSp-------------dG~lLATaS~d 390 (765)
.++.+..||.|+|||+.++. ....+.+|..+|.+++|+| ++.+|++++.|
T Consensus 117 ---------------~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 181 (379)
T 3jrp_A 117 ---------------LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 181 (379)
T ss_dssp ---------------EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT
T ss_pred ---------------EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC
Confidence 01234568999999998873 4556789999999999999 79999999997
Q ss_pred CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC---CCEEEEEeCCCcEEEEeCCCC
Q 004255 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY---SQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 391 Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD---g~~Las~S~dgTVhIwdl~~~ 463 (765)
|. |+|||+... . .....+..+. + +...|.+++|+|| +++|++++.||+|+|||+...
T Consensus 182 g~-i~i~d~~~~-------~------~~~~~~~~~~-~-h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 182 NL-VKIWKYNSD-------A------QTYVLESTLE-G-HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp SC-EEEEEEETT-------T------TEEEEEEEEC-C-CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred Ce-EEEEEecCC-------C------cceeeEEEEe-c-ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 75 999998641 0 0012333443 3 3457999999999 899999999999999999763
No 104
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.81 E-value=5.3e-18 Score=184.52 Aligned_cols=187 Identities=16% Similarity=0.142 Sum_probs=128.7
Q ss_pred CCEEEEEECCCCe-E---EEEEeCC------CCEEEEEecC--CeEEEEe---CCeEEEEECCCCceeEEEEecCCcccC
Q 004255 172 PTAVRFYSFQSHC-Y---EHVLRFR------SSVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLA 236 (765)
Q Consensus 172 p~tV~lWdlktg~-~---v~tL~~~------s~V~sV~~s~--~~LaV~~---~~~I~iwD~~t~~~l~tl~t~p~p~~~ 236 (765)
+++||+|++.+++ . +....+. ..+..|+|+| ++||++. ++.|+|||+.++++++++.. ..+
T Consensus 103 d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~-~~~--- 178 (365)
T 4h5i_A 103 NKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET-RGE--- 178 (365)
T ss_dssp CCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC-SSC---
T ss_pred CCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC-CCc---
Confidence 4689999987643 2 2233321 2588999998 6777654 45799999999998888753 221
Q ss_pred CCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeec
Q 004255 237 GQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLS 314 (765)
Q Consensus 237 ~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls 314 (765)
...++|+| ++||+++
T Consensus 179 ----------V~~v~fspdg~~l~s~s----------------------------------------------------- 195 (365)
T 4h5i_A 179 ----------VKDLHFSTDGKVVAYIT----------------------------------------------------- 195 (365)
T ss_dssp ----------CCEEEECTTSSEEEEEC-----------------------------------------------------
T ss_pred ----------eEEEEEccCCceEEecc-----------------------------------------------------
Confidence 23466655 3444332
Q ss_pred ccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEE--EeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 004255 315 KYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS--QFKAHTSPISALCFDPSGTLLVTASVYGN 392 (765)
Q Consensus 315 ~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~--~~~aH~~~IsaLaFSpdG~lLATaS~dGt 392 (765)
++.+++|+..+++.+. .+.+|...|.+++|+|+|++|++++.+++
T Consensus 196 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~ 242 (365)
T 4h5i_A 196 ---------------------------------GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG 242 (365)
T ss_dssp ---------------------------------SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS
T ss_pred ---------------------------------ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc
Confidence 2345667766666543 34679999999999999999999998764
Q ss_pred ---EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcc-
Q 004255 393 ---NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG- 468 (765)
Q Consensus 393 ---~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~- 468 (765)
.+++||+.... ........+. + +...|++++|||||++||+|+.|++|+|||+........
T Consensus 243 ~~~~i~~~~~~~~~-------------~~~~~~~~~~-~-~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~ 307 (365)
T 4h5i_A 243 KGIVLTKISIKSGN-------------TSVLRSKQVT-N-RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF 307 (365)
T ss_dssp CCEEEEEEEEETTE-------------EEEEEEEEEE-S-SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceeEEeecccccce-------------ecceeeeeec-C-CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe
Confidence 68889875410 0001223333 3 334699999999999999999999999999987554444
Q ss_pred ccccc
Q 004255 469 FQTLS 473 (765)
Q Consensus 469 ~~~h~ 473 (765)
++.|.
T Consensus 308 ~~gH~ 312 (365)
T 4h5i_A 308 KQAHS 312 (365)
T ss_dssp TTSSS
T ss_pred cCccc
Confidence 35675
No 105
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.81 E-value=9.5e-17 Score=172.86 Aligned_cols=245 Identities=14% Similarity=0.110 Sum_probs=171.6
Q ss_pred cEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEE
Q 004255 58 QVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVV 136 (765)
Q Consensus 58 ~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv 136 (765)
.+..+.|.. + .+.+++++..+ .+++||+. .+++...+..+. .|..+++.|+ ...|++.
T Consensus 33 ~~~~~~~s~----d--g~~l~~~~~~d~~i~v~d~~-~~~~~~~~~~~~-~v~~~~~spd-------------g~~l~~~ 91 (391)
T 1l0q_A 33 NPMGAVISP----D--GTKVYVANAHSNDVSIIDTA-TNNVIATVPAGS-SPQGVAVSPD-------------GKQVYVT 91 (391)
T ss_dssp SEEEEEECT----T--SSEEEEEEGGGTEEEEEETT-TTEEEEEEECSS-SEEEEEECTT-------------SSEEEEE
T ss_pred CcceEEECC----C--CCEEEEECCCCCeEEEEECC-CCeEEEEEECCC-CccceEECCC-------------CCEEEEE
Confidence 466666654 1 13455777554 59999995 566766666555 8999999874 2355543
Q ss_pred EcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeE-EEEe-CCe
Q 004255 137 AGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIV-AVGL-ATQ 212 (765)
Q Consensus 137 ~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~L-aV~~-~~~ 212 (765)
..+ +++|++||+.+++.+..+..+..+.++++++ +.| +++. ++.
T Consensus 92 ~~~--------------------------------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 92 NMA--------------------------------SSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKT 139 (391)
T ss_dssp ETT--------------------------------TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred ECC--------------------------------CCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCE
Confidence 321 2689999999999999999988999999987 455 4444 568
Q ss_pred EEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCc
Q 004255 213 IYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSS 292 (765)
Q Consensus 213 I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gs 292 (765)
|++||+.+++.+..+..+..+ ..++++| +. ..
T Consensus 140 v~~~d~~~~~~~~~~~~~~~~--------------~~~~~~~-------dg---------------------------~~ 171 (391)
T 1l0q_A 140 VSVINTVTKAVINTVSVGRSP--------------KGIAVTP-------DG---------------------------TK 171 (391)
T ss_dssp EEEEETTTTEEEEEEECCSSE--------------EEEEECT-------TS---------------------------SE
T ss_pred EEEEECCCCcEEEEEecCCCc--------------ceEEECC-------CC---------------------------CE
Confidence 999999999887776543221 1233322 10 00
Q ss_pred ceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCe
Q 004255 293 LVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPI 372 (765)
Q Consensus 293 lva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~I 372 (765)
++ ..+..+|.|++||+.+++.+..+.. ...+
T Consensus 172 l~------------------------------------------------~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~ 202 (391)
T 1l0q_A 172 VY------------------------------------------------VANFDSMSISVIDTVTNSVIDTVKV-EAAP 202 (391)
T ss_dssp EE------------------------------------------------EEETTTTEEEEEETTTTEEEEEEEC-SSEE
T ss_pred EE------------------------------------------------EEeCCCCEEEEEECCCCeEEEEEec-CCCc
Confidence 00 0123568999999999988877764 4678
Q ss_pred EEEEECCCCCEEEEEEc--CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE-EEE
Q 004255 373 SALCFDPSGTLLVTASV--YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI-AIV 449 (765)
Q Consensus 373 saLaFSpdG~lLATaS~--dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L-as~ 449 (765)
.+++|+|+|++|++++. .+..|++||+.. + ..+..+..+ ..+.+++|+|||++| +++
T Consensus 203 ~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~-------~----------~~~~~~~~~---~~~~~~~~s~dg~~l~~s~ 262 (391)
T 1l0q_A 203 SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT-------N----------KITARIPVG---PDPAGIAVTPDGKKVYVAL 262 (391)
T ss_dssp EEEEECTTSSEEEEEEECSSCCEEEEEETTT-------T----------EEEEEEECC---SSEEEEEECTTSSEEEEEE
T ss_pred cceEECCCCCEEEEEecCcCCCcEEEEECCC-------C----------eEEEEEecC---CCccEEEEccCCCEEEEEc
Confidence 99999999999999884 355799999864 2 355555432 247899999999988 566
Q ss_pred eCCCcEEEEeCCCCCCCcccccc
Q 004255 450 SSKGTCHVFVLSPFGGDSGFQTL 472 (765)
Q Consensus 450 S~dgTVhIwdl~~~gg~~~~~~h 472 (765)
+.|++|++||+........+..|
T Consensus 263 ~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 263 SFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECS
T ss_pred CCCCEEEEEECCCCcEEEEEECC
Confidence 88999999999874433334444
No 106
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.80 E-value=2.3e-18 Score=181.73 Aligned_cols=225 Identities=12% Similarity=0.158 Sum_probs=154.0
Q ss_pred EeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEE
Q 004255 99 ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFY 178 (765)
Q Consensus 99 ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lW 178 (765)
.+...|.++|.++++.|.+. ...+++++.++ .++|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~---------~~~~~~~~~~~---------------------------------~~~v~vw 49 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSK---------EGDPLVFATVG---------------------------------SNRVTLY 49 (366)
T ss_dssp EEECTTCSCEEEEEECTTCC---------TTSCEEEEEEE---------------------------------TTEEEEE
T ss_pred EeecCCCCceEEEEEecccC---------CCCceEEEECC---------------------------------CCEEEEE
Confidence 45668899999999998521 12234444332 2489999
Q ss_pred ECCCCeEEEEEe------CCCCEEEEEecCC------eEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 004255 179 SFQSHCYEHVLR------FRSSVCMVRCSPR------IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (765)
Q Consensus 179 dlktg~~v~tL~------~~s~V~sV~~s~~------~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~ 245 (765)
|+.+++.+..+. ....|.++++++. +|+++. ++.|++||+.+++.+..+..|..+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~------------ 117 (366)
T 3k26_A 50 ECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA------------ 117 (366)
T ss_dssp EECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSC------------
T ss_pred EcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCc------------
Confidence 999998887775 2367999999875 677655 567999999999988888766542
Q ss_pred ccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCC
Q 004255 246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (765)
Q Consensus 246 ~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s 325 (765)
...++++| .+ +.+
T Consensus 118 -i~~~~~~~-------~~---------------------------~~~-------------------------------- 130 (366)
T 3k26_A 118 -INELKFHP-------RD---------------------------PNL-------------------------------- 130 (366)
T ss_dssp -EEEEEECS-------SC---------------------------TTE--------------------------------
T ss_pred -EEEEEECC-------CC---------------------------CCE--------------------------------
Confidence 22333322 00 000
Q ss_pred CCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 004255 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 402 (765)
Q Consensus 326 ~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~---~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~ 402 (765)
++.+..||.|+|||+.+++.+..+ .+|..+|.+++|+|+|.+|++++.||. |++||+...
T Consensus 131 ----------------l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~ 193 (366)
T 3k26_A 131 ----------------LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHS-LKLWRINSK 193 (366)
T ss_dssp ----------------EEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSC-EEEEESCSH
T ss_pred ----------------EEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCC-EEEEECCCC
Confidence 113456899999999999999888 789999999999999999999999775 999998642
Q ss_pred ccc---------CCCCCCccccCCc--ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 403 CMR---------SGSGNHKYDWNSS--HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 403 ~~~---------~~sG~~~~~~~~s--~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
... +..+.. ...... ....+....+ +...|.+++|+ +++|++++.|++|++||+.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 194 RMMNAIKESYDYNPNKTN-RPFISQKIHFPDFSTRDI-HRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMED 263 (366)
T ss_dssp HHHHHHHHHHTCCGGGCS-SCCCCEEECCCSEEECSS-CSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTC
T ss_pred ccccccceeEEecCCCCc-ccccceeeccCccccccC-CcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccc
Confidence 100 000000 000000 0001111222 34579999999 78999999999999999976544
No 107
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.6e-17 Score=202.35 Aligned_cols=247 Identities=11% Similarity=0.087 Sum_probs=166.9
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCE
Q 004255 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (765)
Q Consensus 54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpL 132 (765)
++++.|..+.|+. ++++|++|..+| ++|||.. ..++...+ .|.++|..|+|.|. .+
T Consensus 15 gh~~~V~~lafsp-------dg~~lAsgs~Dg~I~lw~~~-~~~~~~~~-~~~~~V~~l~fspg--------------~~ 71 (902)
T 2oaj_A 15 GMSSKPIAAAFDF-------TQNLLAIATVTGEVHIYGQQ-QVEVVIKL-EDRSAIKEMRFVKG--------------IY 71 (902)
T ss_dssp ECSSCEEEEEEET-------TTTEEEEEETTSEEEEECST-TCEEEEEC-SSCCCEEEEEEETT--------------TE
T ss_pred CCCCCcEEEEECC-------CCCEEEEEeCCCEEEEEeCC-CcEEEEEc-CCCCCEEEEEEcCC--------------CE
Confidence 4678899999986 257899999887 9999985 33333322 36789999999861 25
Q ss_pred EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe-
Q 004255 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL- 209 (765)
Q Consensus 133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~- 209 (765)
|+.++. +++|+|||++++++++++.+++.|.++++++ ++|++|.
T Consensus 72 L~S~s~---------------------------------D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~ 118 (902)
T 2oaj_A 72 LVVINA---------------------------------KDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQ 118 (902)
T ss_dssp EEEEET---------------------------------TCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEET
T ss_pred EEEEEC---------------------------------cCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcC
Confidence 655332 3699999999999999999889999999998 6788776
Q ss_pred CCeEEEEECCCCceeEEEEecCCcc--cCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcC
Q 004255 210 ATQIYCFDALTLENKFSVLTYPVPQ--LAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (765)
Q Consensus 210 ~~~I~iwD~~t~~~l~tl~t~p~p~--~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~s 287 (765)
++.|++||+.++++. .+....... ....+- ......++++| .+
T Consensus 119 dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h---~~~V~sl~~sp-------~~------------------------ 163 (902)
T 2oaj_A 119 NGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAAR---LSPIVSIQWNP-------RD------------------------ 163 (902)
T ss_dssp TSCEEEEETTTTEEE-EEEECCHHHHHTCSSSC---CCCCCEEEEET-------TE------------------------
T ss_pred CCcEEEEECCCCccc-cceeccccccccccccC---CCCeEEEEEcc-------CC------------------------
Confidence 457999999988652 111100000 000000 00011222222 00
Q ss_pred CCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 004255 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (765)
Q Consensus 288 p~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a 367 (765)
+ ..++.+..||.| |||+.+++.+..|..
T Consensus 164 ---~------------------------------------------------~~l~~g~~dg~v-lWd~~~~~~~~~~~~ 191 (902)
T 2oaj_A 164 ---I------------------------------------------------GTVLISYEYVTL-TYSLVENEIKQSFIY 191 (902)
T ss_dssp ---E------------------------------------------------EEEEEECSSCEE-EEETTTTEEEEEECC
T ss_pred ---C------------------------------------------------CEEEEEeCCCcE-EEECCCCceEEEEec
Confidence 0 001234568899 999999998888876
Q ss_pred C------------------CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE--Ee-
Q 004255 368 H------------------TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK--LH- 426 (765)
Q Consensus 368 H------------------~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~--l~- 426 (765)
| ..+|.+++|+|||++|||++.||+ |+|||+.. | +.+.. +.
T Consensus 192 ~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd~~~-------g----------~~~~~r~l~~ 253 (902)
T 2oaj_A 192 ELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWDANS-------G----------HMIMARTVFE 253 (902)
T ss_dssp CBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEETTT-------C----------CEEEEECSSC
T ss_pred ccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCC-------C----------cEEEEEeecc
Confidence 6 578999999999999999999775 99999965 3 23321 11
Q ss_pred -ccc------------ccccEEEEEEc----cCC-CEEEEEeCC-----CcEEEEeCC
Q 004255 427 -RGI------------TSATIQDICFS----HYS-QWIAIVSSK-----GTCHVFVLS 461 (765)
Q Consensus 427 -rG~------------~~a~I~slaFS----pDg-~~Las~S~d-----gTVhIwdl~ 461 (765)
.++ +...|++++|+ ||+ .+|++++.| +++++|++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 254 TEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG 311 (902)
T ss_dssp SCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred cccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence 011 23369999995 554 567888766 379999863
No 108
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.4e-16 Score=164.68 Aligned_cols=210 Identities=11% Similarity=0.069 Sum_probs=152.7
Q ss_pred CcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCE
Q 004255 95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA 174 (765)
Q Consensus 95 g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~t 174 (765)
.++...+..|.++|.++++ |+ ..+|++.+. +++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~-------------~~~l~s~~~---------------------------------dg~ 40 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VD-------------DSKVASVSR---------------------------------DGT 40 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EE-------------TTEEEEEET---------------------------------TSE
T ss_pred HHHHHHhhCCCCCcEEEEe-cC-------------CCEEEEEEc---------------------------------CCc
Confidence 3566778899999999998 64 236655321 368
Q ss_pred EEEEECCCCeEEEEEeC-CCCEEEEEecC--CeEEEEe-CCeEEEEECCCCc---eeEEEEecCCcccCCCCcccccccc
Q 004255 175 VRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLE---NKFSVLTYPVPQLAGQGAVGINVGY 247 (765)
Q Consensus 175 V~lWdlktg~~v~tL~~-~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~---~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (765)
|++||+.+++.+..+.. ...|.++++++ ++|+++. ++.|++||+.+.. ....+..|..+ .
T Consensus 41 v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~-------------i 107 (313)
T 3odt_A 41 VRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGN-------------V 107 (313)
T ss_dssp EEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSC-------------E
T ss_pred EEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccC-------------E
Confidence 99999999998888875 57999999987 6777665 5679999987653 33333333221 1
Q ss_pred ceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (765)
Q Consensus 248 ~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~ 327 (765)
..+++..++
T Consensus 108 ~~~~~~~~~----------------------------------------------------------------------- 116 (313)
T 3odt_A 108 CSLSFQDGV----------------------------------------------------------------------- 116 (313)
T ss_dssp EEEEEETTE-----------------------------------------------------------------------
T ss_pred EEEEecCCE-----------------------------------------------------------------------
Confidence 112221111
Q ss_pred CccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccC
Q 004255 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRS 406 (765)
Q Consensus 328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~ 406 (765)
++.+..||.|++|| .++.+..+..|..+|.+++|+| ++.+|++++.+|. |++||..
T Consensus 117 --------------l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~i~d~~------ 173 (313)
T 3odt_A 117 --------------VISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT-IKLWQND------ 173 (313)
T ss_dssp --------------EEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSC-EEEEETT------
T ss_pred --------------EEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCC-EEEEecC------
Confidence 12345688999999 7788889999999999999998 9999999999775 9999952
Q ss_pred CCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 407 ~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
..+..+. +.+...|.+++|+|+++ |++++.||+|+|||+........+..|.
T Consensus 174 -------------~~~~~~~-~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 225 (313)
T 3odt_A 174 -------------KVIKTFS-GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE 225 (313)
T ss_dssp -------------EEEEEEC-SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred -------------ceEEEEe-ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC
Confidence 2444443 43456799999999998 9999999999999998755444555554
No 109
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.79 E-value=3.5e-18 Score=187.43 Aligned_cols=257 Identities=13% Similarity=0.039 Sum_probs=138.6
Q ss_pred CeEEEEEecCc-EEEEEccCCCcce-----EeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCC
Q 004255 75 KQVLLLGYQNG-FQVLDVEDASNFN-----ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQ 148 (765)
Q Consensus 75 ~~vL~~G~~~G-~qVWdv~~~g~~~-----ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~ 148 (765)
.++|++|..++ ++|||++. +++. ..+.+|.+.|..|++.|..... ......+||.++.
T Consensus 101 ~~~las~~~d~~v~lw~~~~-~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~-----~~~d~~~las~s~---------- 164 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKN-ETIITQHVLGGKSGHHNFVNDIDIADVYSAD-----NRLAEQVIASVGD---------- 164 (393)
T ss_dssp EEEEEEEETTSCEEEEEEET-TEEEEEEEECTTTSCSSCEEEEEEEEEECTT-----CSEEEEEEEEEET----------
T ss_pred CCEEEEEeCCCcEEEEECCC-CccceeeeecccCCCCCceEEEEEccccccc-----cCCCCCEEEEEEC----------
Confidence 56788888775 99999964 3332 3467899999999999832110 0012236765321
Q ss_pred CcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEE-EEeCCCCEEEEEecC---CeEEEEe-CCeEEEEECCCCce
Q 004255 149 NRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEH-VLRFRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLEN 223 (765)
Q Consensus 149 ~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~-tL~~~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~t~~~ 223 (765)
+++|+|||++++..+. .+.+++.|.+|+|+| ++|+++. ++.|++||+.+++.
T Consensus 165 -----------------------D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~ 221 (393)
T 4gq1_A 165 -----------------------DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS 221 (393)
T ss_dssp -----------------------TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-
T ss_pred -----------------------CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc
Confidence 4799999998876655 456788999999997 3677765 56799999999887
Q ss_pred eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhh
Q 004255 224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK 303 (765)
Q Consensus 224 l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k 303 (765)
...+..++.... ...+.+...-+..... ..+
T Consensus 222 ~~~~~~~~~~~~-----------~~~~s~~~~~~~~~~~-----~~~--------------------------------- 252 (393)
T 4gq1_A 222 AEENSQTELVKN-----------PWLLTLNTLPLVNTCH-----SSG--------------------------------- 252 (393)
T ss_dssp ---------CSC-----------CCSEEEESGGGC-----------C---------------------------------
T ss_pred cccccccCCccc-----------ceEEecccccceeeee-----ccc---------------------------------
Confidence 665543332100 0011111100000000 000
Q ss_pred hhhcccceeecccccccCCCCCCCCccC-CCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC---
Q 004255 304 QFAAGLSKTLSKYCQELLPDGSSSPVSP-NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP--- 379 (765)
Q Consensus 304 ~la~G~~ktls~~~~~~~p~~s~~~~s~-s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp--- 379 (765)
.... .....+ .+++ ..++.+..|++++|||+.+++....+..|...+..+.|.|
T Consensus 253 -----~~~~-------------v~~v~~~~~dg----~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~ 310 (393)
T 4gq1_A 253 -----IASS-------------LANVRWIGSDG----SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQ 310 (393)
T ss_dssp -----CSSS-------------CSEEEEETTTT----CEEEEECTTSEEEEEEC-------------------CCSCSEE
T ss_pred -----cccc-------------ceeeeeecCCC----CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccc
Confidence 0000 000000 0111 1234567899999999998887777777776666555544
Q ss_pred -----------------CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255 380 -----------------SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (765)
Q Consensus 380 -----------------dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD 442 (765)
++.++++++.|| .|+|||+.+ + ..+..+..+ ...|.+|+||||
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg-~V~lwd~~~-------~----------~~~~~~~~~--~~~V~svafspd 370 (393)
T 4gq1_A 311 GISLFPSLLGACPHPRYMDYFATAHSQHG-LIQLINTYE-------K----------DSNSIPIQL--GMPIVDFCWHQD 370 (393)
T ss_dssp EECSSCCSSCCEECSSCTTEEEEEETTTT-EEEEEETTC-------T----------TCCEEEEEC--SSCEEEEEECTT
T ss_pred cccccCcceeEEEccCCCCEEEEEECCCC-EEEEEECCC-------C----------cEEEEecCC--CCcEEEEEEcCC
Confidence 334566777755 699999865 2 223333322 347999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCC
Q 004255 443 SQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 443 g~~Las~S~dgTVhIwdl~~ 462 (765)
|++||+++.+| +.||.+..
T Consensus 371 G~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 371 GSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp SSEEEEEESSE-EEEEEEGG
T ss_pred CCEEEEEeCCC-eEEEEEeC
Confidence 99999999777 66776653
No 110
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.79 E-value=5.3e-17 Score=170.19 Aligned_cols=213 Identities=12% Similarity=0.098 Sum_probs=150.2
Q ss_pred cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEE
Q 004255 96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV 175 (765)
Q Consensus 96 ~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV 175 (765)
.++.+|.+|.++|.+|++.|+ ...+||..+. +++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~------------~~~~l~S~s~---------------------------------D~~i 63 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQ------------FPDMILSASR---------------------------------DKTI 63 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTT------------CTTEEEEEET---------------------------------TSCE
T ss_pred EEEEEECCccCCEEEEEEeCC------------CCCEEEEEcC---------------------------------CCeE
Confidence 456678999999999999974 1236655221 3689
Q ss_pred EEEECCCCe-----EEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 004255 176 RFYSFQSHC-----YEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (765)
Q Consensus 176 ~lWdlktg~-----~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~ 246 (765)
+|||+.+++ +.++++.+ ..|.++++++ ++|+++. ++.|++|+............+...
T Consensus 64 ~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~------------- 130 (340)
T 4aow_A 64 IMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD------------- 130 (340)
T ss_dssp EEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-------------
T ss_pred EEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc-------------
Confidence 999987654 56677654 6899999987 5777655 567999999887655544432220
Q ss_pred cceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCC
Q 004255 247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (765)
Q Consensus 247 ~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~ 326 (765)
...+. +.... .
T Consensus 131 ~~~~~-------~~~~~---------------------------~----------------------------------- 141 (340)
T 4aow_A 131 VLSVA-------FSSDN---------------------------R----------------------------------- 141 (340)
T ss_dssp EEEEE-------ECTTS---------------------------S-----------------------------------
T ss_pred eeEEE-------EeecC---------------------------c-----------------------------------
Confidence 00111 11100 0
Q ss_pred CCccCCCccccccccccccCCCCeEEEEECCCCcE-EEEeccCCCCeEEEEECCCC--CEEEEEEcCCCEEEEEeCCCCc
Q 004255 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPSG--TLLVTASVYGNNINIFRIMPSC 403 (765)
Q Consensus 327 ~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~-i~~~~aH~~~IsaLaFSpdG--~lLATaS~dGt~IrVWdi~~~~ 403 (765)
.++++..||.+++||+..... ...+.+|...|.+++|++++ .++++++.|+. |++||+..
T Consensus 142 --------------~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~-i~i~d~~~-- 204 (340)
T 4aow_A 142 --------------QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL-VKVWNLAN-- 204 (340)
T ss_dssp --------------CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC-EEEEETTT--
T ss_pred --------------cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE-EEEEECCC--
Confidence 012345789999999987654 44567899999999999875 57899999665 99999965
Q ss_pred ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccc
Q 004255 404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 469 (765)
Q Consensus 404 ~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~ 469 (765)
+ ..+..+. ++ ...|++|+|+||+++|++++.||+|+|||+........+
T Consensus 205 -----~----------~~~~~~~-~h-~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 253 (340)
T 4aow_A 205 -----C----------KLKTNHI-GH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 253 (340)
T ss_dssp -----T----------EEEEEEC-CC-SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred -----C----------ceeeEec-CC-CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee
Confidence 2 3555553 43 457999999999999999999999999999875443333
No 111
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.79 E-value=8.7e-17 Score=190.04 Aligned_cols=243 Identities=15% Similarity=0.188 Sum_probs=179.6
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (765)
Q Consensus 53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp 131 (765)
..+...|..+.|.. .++.|++|..+| ++|||+. .++....+..|.+.|.++++.|+ .+
T Consensus 52 ~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~vw~~~-~~~~~~~~~~~~~~v~~~~~s~~-------------~~ 110 (814)
T 3mkq_A 52 QVTETPVRAGKFIA-------RKNWIIVGSDDFRIRVFNYN-TGEKVVDFEAHPDYIRSIAVHPT-------------KP 110 (814)
T ss_dssp ECCSSCEEEEEEEG-------GGTEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECSS-------------SS
T ss_pred ecCCCcEEEEEEeC-------CCCEEEEEeCCCeEEEEECC-CCcEEEEEecCCCCEEEEEEeCC-------------CC
Confidence 34667788888866 256788888776 9999995 57777888889999999999874 34
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC-eEEEEEeC-CCCEEEEEecC---CeEE
Q 004255 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-CYEHVLRF-RSSVCMVRCSP---RIVA 206 (765)
Q Consensus 132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg-~~v~tL~~-~s~V~sV~~s~---~~La 206 (765)
+|++.+. +++|++||+.++ ..+..+.. ...|.++++++ +.|+
T Consensus 111 ~l~~~~~---------------------------------dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 157 (814)
T 3mkq_A 111 YVLSGSD---------------------------------DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (814)
T ss_dssp EEEEEET---------------------------------TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred EEEEEcC---------------------------------CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEE
Confidence 6665221 368999999987 67777765 46899999987 4666
Q ss_pred EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCC
Q 004255 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (765)
Q Consensus 207 V~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s 285 (765)
++. ++.|++||+.+++....+..+... ... .+++....
T Consensus 158 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~------------~v~-------~~~~~~~~---------------------- 196 (814)
T 3mkq_A 158 SGCLDRTVKVWSLGQSTPNFTLTTGQER------------GVN-------YVDYYPLP---------------------- 196 (814)
T ss_dssp EEETTSEEEEEETTCSSCSEEEECCCTT------------CCC-------EEEECCST----------------------
T ss_pred EEeCCCeEEEEECCCCcceeEEecCCCC------------CEE-------EEEEEECC----------------------
Confidence 655 568999999988877777653321 011 22222200
Q ss_pred cCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 004255 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (765)
Q Consensus 286 ~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~ 365 (765)
+ +. .++.+..+|.|++||+.+++.+..+
T Consensus 197 ---~-~~------------------------------------------------~l~~~~~dg~i~~~d~~~~~~~~~~ 224 (814)
T 3mkq_A 197 ---D-KP------------------------------------------------YMITASDDLTIKIWDYQTKSCVATL 224 (814)
T ss_dssp ---T-CC------------------------------------------------EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred ---C-CC------------------------------------------------EEEEEeCCCEEEEEECCCCcEEEEE
Confidence 0 00 0123456899999999999999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-
Q 004255 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ- 444 (765)
Q Consensus 366 ~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~- 444 (765)
.+|..+|.+++|+|+|.+|++++.||. |++||+.. + ..+..+..+ ...|++++|+|||+
T Consensus 225 ~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~-------~----------~~~~~~~~~--~~~v~~~~~~~~~~~ 284 (814)
T 3mkq_A 225 EGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSST-------Y----------KVEKTLNVG--LERSWCIATHPTGRK 284 (814)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTT-------C----------SEEEEECCS--SSSEEEEEECTTCGG
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCC-------C----------cEEEEeecC--CCcEEEEEEccCCCc
Confidence 999999999999999999999999775 99999864 3 355666432 34699999999997
Q ss_pred -EEEEEeCCCcEEEEeCCCC
Q 004255 445 -WIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 445 -~Las~S~dgTVhIwdl~~~ 463 (765)
++++++ ++.+.+|++...
T Consensus 285 ~~~~~~~-~~~~~~~~~~~~ 303 (814)
T 3mkq_A 285 NYIASGF-DNGFTVLSLGND 303 (814)
T ss_dssp GEEEEEE-TTEEEEEECSCC
T ss_pred eEEEEEe-CCCEEEEEcCCC
Confidence 465555 666889988654
No 112
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.79 E-value=8.4e-17 Score=166.96 Aligned_cols=210 Identities=16% Similarity=0.156 Sum_probs=144.7
Q ss_pred ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 004255 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (765)
Q Consensus 97 ~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~ 176 (765)
+..++..|.++|.+|++.|+ ..+||+.+. +++|+
T Consensus 3 ~~~~~~gH~~~v~~~~~~~~-------------~~~l~~~~~---------------------------------dg~i~ 36 (351)
T 3f3f_A 3 MQPFDSGHDDLVHDVVYDFY-------------GRHVATCSS---------------------------------DQHIK 36 (351)
T ss_dssp CCCEECCCSSCEEEEEECSS-------------SSEEEEEET---------------------------------TSEEE
T ss_pred ccccCcccccceeEEEEcCC-------------CCEEEEeeC---------------------------------CCeEE
Confidence 45678899999999999974 236665321 36899
Q ss_pred EEECCCC----eEEEEEeC-CCCEEEEEecC----CeEEEEe-CCeEEEEECCCCce---------eEEEEecCCcccCC
Q 004255 177 FYSFQSH----CYEHVLRF-RSSVCMVRCSP----RIVAVGL-ATQIYCFDALTLEN---------KFSVLTYPVPQLAG 237 (765)
Q Consensus 177 lWdlktg----~~v~tL~~-~s~V~sV~~s~----~~LaV~~-~~~I~iwD~~t~~~---------l~tl~t~p~p~~~~ 237 (765)
+||+.++ +.+..+.. ...|.++++++ ++|+++. ++.|++||+.+++. +..+..|..+
T Consensus 37 iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---- 112 (351)
T 3f3f_A 37 VFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGS---- 112 (351)
T ss_dssp EEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSC----
T ss_pred EEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCc----
Confidence 9999977 46777764 46899999975 5777765 56799999988742 2222222221
Q ss_pred CCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccc
Q 004255 238 QGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC 317 (765)
Q Consensus 238 ~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~ 317 (765)
...++++| +..
T Consensus 113 ---------v~~~~~~~-------~~~----------------------------------------------------- 123 (351)
T 3f3f_A 113 ---------LYSVKFAP-------AHL----------------------------------------------------- 123 (351)
T ss_dssp ---------EEEEEECC-------GGG-----------------------------------------------------
T ss_pred ---------eeEEEEcC-------CCC-----------------------------------------------------
Confidence 11122211 000
Q ss_pred cccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec-------------cCCCCeEEEEECCC---C
Q 004255 318 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-------------AHTSPISALCFDPS---G 381 (765)
Q Consensus 318 ~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~-------------aH~~~IsaLaFSpd---G 381 (765)
. ..++.+..||.|+|||+.+++.+..+. +|...|.+++|+|+ +
T Consensus 124 -----------------~----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 182 (351)
T 3f3f_A 124 -----------------G----LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP 182 (351)
T ss_dssp -----------------C----SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC
T ss_pred -----------------C----cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCC
Confidence 0 012244578999999998877554443 68899999999997 9
Q ss_pred CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC----CEEEEEeCCCcEEE
Q 004255 382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS----QWIAIVSSKGTCHV 457 (765)
Q Consensus 382 ~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg----~~Las~S~dgTVhI 457 (765)
.+|++++.++ .+.+|+... + ....+..+. + +...|.+++|+|++ ++|++++.||+|+|
T Consensus 183 ~~l~~~~~~~-~~~~~~~~~-------~--------~~~~~~~~~-~-h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 183 EKLAVSALEQ-AIIYQRGKD-------G--------KLHVAAKLP-G-HKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp CEEEEEETTE-EEEEEECTT-------S--------CEEEEEECC-C-CCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred cEEEEecCCC-cEEEEccCC-------C--------ceeeeeecC-C-CCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 9999999966 466666533 2 112233432 3 34579999999998 89999999999999
Q ss_pred EeCCCCC
Q 004255 458 FVLSPFG 464 (765)
Q Consensus 458 wdl~~~g 464 (765)
||+....
T Consensus 245 wd~~~~~ 251 (351)
T 3f3f_A 245 FKITEKL 251 (351)
T ss_dssp EEEEECC
T ss_pred EeCCCCc
Confidence 9998643
No 113
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.76 E-value=4.8e-17 Score=177.83 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=82.3
Q ss_pred cccCCCCeEEEEECCC-CcEEE-------EeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 004255 343 ADMDNAGIVVVKDFVT-RAIIS-------QFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (765)
Q Consensus 343 ~~~~~dG~V~IwDl~s-~~~i~-------~~~aH~~~IsaLaFSpdG-~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~ 413 (765)
+.+ .||.|+|||+.+ ++.+. .+.+|...|.+++|+|+| ++||+++.||+ |+|||+..... .
T Consensus 193 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~----~---- 262 (447)
T 3dw8_B 193 LSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCDMRASAL----C---- 262 (447)
T ss_dssp EEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEETTTCSS----S----
T ss_pred EEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEECcCCcc----c----
Confidence 345 699999999994 44444 367999999999999999 99999999775 99999965210 0
Q ss_pred ccCCcceEEEEEeccccc-----------ccEEEEEEccCCCEEEEEeCCCcEEEEeCCC-CCCCcccccc
Q 004255 414 DWNSSHVHLYKLHRGITS-----------ATIQDICFSHYSQWIAIVSSKGTCHVFVLSP-FGGDSGFQTL 472 (765)
Q Consensus 414 ~~~~s~~~l~~l~rG~~~-----------a~I~slaFSpDg~~Las~S~dgTVhIwdl~~-~gg~~~~~~h 472 (765)
...+..+. ++.. ..|.+++|+|||++|++++. ++|+|||+.. ......+..|
T Consensus 263 -----~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 263 -----DRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp -----CTTCEEEC-CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC
T ss_pred -----cceeeEec-cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc
Confidence 00123332 2221 26999999999999999999 9999999986 3323334444
No 114
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.75 E-value=2.5e-16 Score=173.26 Aligned_cols=227 Identities=15% Similarity=0.150 Sum_probs=156.5
Q ss_pred CCEEEEEECCCCeEEEEEeCC---CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 004255 172 PTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~---s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~ 245 (765)
+++|+|||+.+|++++.++++ ..|.+|+|++ ++||+|. ++.|+|||+.++++++++..|...
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~------------ 191 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------ 191 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC------------
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc------------
Confidence 369999999999999988753 4799999998 6888876 457999999999999988877652
Q ss_pred ccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCC
Q 004255 246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (765)
Q Consensus 246 ~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s 325 (765)
...++..++.|+.++.+..+. .|+.... ...+ .++.++....
T Consensus 192 -v~~~s~~~~~l~sgs~d~~i~-----~~d~~~~-----------~~~~----------------~~~~~h~~~~----- 233 (420)
T 4gga_A 192 -VGSLSWNSYILSSGSRSGHIH-----HHDVRVA-----------EHHV----------------ATLSGHSQEV----- 233 (420)
T ss_dssp -EEEEEEETTEEEEEETTSEEE-----EEETTSS-----------SCEE----------------EEEECCSSCE-----
T ss_pred -eEEEeeCCCEEEEEeCCCcee-----Eeeeccc-----------ceee----------------EEecccccce-----
Confidence 345667778888887653221 1111110 0000 1111111110
Q ss_pred CCCccCCCccccccccccccCCCCeEEEEECCCCc----EEEEeccCCCCeEEEEECCCC-CEEEEEE-cCCCEEEEEeC
Q 004255 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSG-TLLVTAS-VYGNNINIFRI 399 (765)
Q Consensus 326 ~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~----~i~~~~aH~~~IsaLaFSpdG-~lLATaS-~dGt~IrVWdi 399 (765)
......+.++ .++.+..||.|+|||+.+++ .+..+..|..+|.+++|+|++ .+|++++ ..++.|+|||+
T Consensus 234 -~~~~~~~~g~----~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~ 308 (420)
T 4gga_A 234 -CGLRWAPDGR----HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308 (420)
T ss_dssp -EEEEECTTSS----EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred -eeeeecCCCC----eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence 0011111111 24467789999999998765 456678899999999999964 5666653 23457999999
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCCCCccccccc
Q 004255 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS--SKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 400 ~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S--~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
.+ | ..+..+.. ...|.++.|+|+++.|++++ .|++|+|||+........+.+|.
T Consensus 309 ~t-------~----------~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~ 364 (420)
T 4gga_A 309 CS-------G----------ACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT 364 (420)
T ss_dssp TT-------T----------EEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS
T ss_pred Cc-------c----------ccceeecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC
Confidence 65 3 45555542 24589999999999998876 79999999998766666677785
No 115
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.75 E-value=1.7e-16 Score=175.72 Aligned_cols=103 Identities=18% Similarity=0.286 Sum_probs=83.8
Q ss_pred ccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 004255 344 DMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~---~~i~~~~aH~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~ 419 (765)
.+..+|.|+|||+.++ +.+..+.+|..+|.+|+|+|+|. +||+++.|| .|+|||++.. +
T Consensus 249 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg-~v~vwd~~~~------~---------- 311 (430)
T 2xyi_A 249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK-TVALWDLRNL------K---------- 311 (430)
T ss_dssp EEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCT------T----------
T ss_pred EEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC-eEEEEeCCCC------C----------
Confidence 3457899999999987 57788899999999999999997 789999966 5999999641 1
Q ss_pred eEEEEEecccccccEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCC
Q 004255 420 VHLYKLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaFSpDg~-~Las~S~dgTVhIwdl~~~gg 465 (765)
..+..+. + +...|.+|+|+|+++ +|++++.|++|+|||+...+.
T Consensus 312 ~~~~~~~-~-h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 312 LKLHSFE-S-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp SCSEEEE-C-CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred CCeEEee-c-CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 2344554 2 345799999999995 699999999999999987543
No 116
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.74 E-value=1.8e-16 Score=173.07 Aligned_cols=216 Identities=14% Similarity=0.118 Sum_probs=154.8
Q ss_pred CCEEEEEECCCCeEEEEEeC--CCCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 004255 172 PTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~--~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~ 246 (765)
+++|++||+.+++.+..+.. ...|.+|++++ ++|+++. ++.|++||+.+++.+.++..|..+
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------- 178 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR------------- 178 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC-------------
T ss_pred CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCc-------------
Confidence 47899999999999988876 56899999987 6787776 567999999999998888766552
Q ss_pred cceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCC
Q 004255 247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (765)
Q Consensus 247 ~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~ 326 (765)
...+++.+++|++++.+..+ ..|+.... +..+ +++.++.. ..
T Consensus 179 v~~~~~~~~~l~~~~~dg~i-----~i~d~~~~-----------~~~~----------------~~~~~~~~------~v 220 (401)
T 4aez_A 179 VGCLSWNRHVLSSGSRSGAI-----HHHDVRIA-----------NHQI----------------GTLQGHSS------EV 220 (401)
T ss_dssp EEEEEEETTEEEEEETTSEE-----EEEETTSS-----------SCEE----------------EEEECCSS------CE
T ss_pred eEEEEECCCEEEEEcCCCCE-----EEEecccC-----------ccee----------------eEEcCCCC------Ce
Confidence 34577777888888765321 12222110 0000 11111110 01
Q ss_pred CCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEE--cCCCEEEEEeCCCCc
Q 004255 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTAS--VYGNNINIFRIMPSC 403 (765)
Q Consensus 327 ~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG-~lLATaS--~dGt~IrVWdi~~~~ 403 (765)
..+.++++++ .++.+..||.|+|||+.+++.+..+.+|..+|.+++|+|+| .+|++++ .|| .|++||+..
T Consensus 221 ~~~~~~~~~~----~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~-~i~i~d~~~-- 293 (401)
T 4aez_A 221 CGLAWRSDGL----QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK-QIHFWNAAT-- 293 (401)
T ss_dssp EEEEECTTSS----EEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC-EEEEEETTT--
T ss_pred eEEEEcCCCC----EEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCC-EEEEEECCC--
Confidence 1122222222 24567789999999999999999999999999999999976 5667765 544 699999965
Q ss_pred ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe--CCCcEEEEeCCCC
Q 004255 404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS--SKGTCHVFVLSPF 463 (765)
Q Consensus 404 ~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S--~dgTVhIwdl~~~ 463 (765)
+ ..+..+. +...|.+++|+||+++|++++ .||+|+||++...
T Consensus 294 -----~----------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 294 -----G----------ARVNTVD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp -----C----------CEEEEEE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred -----C----------CEEEEEe---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 3 3555554 234699999999999999954 8999999999763
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.3e-16 Score=177.30 Aligned_cols=100 Identities=13% Similarity=0.080 Sum_probs=82.5
Q ss_pred CCCCeEEEEECCCCcEEE----EeccCCCCeEEEEECCC---CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 004255 346 DNAGIVVVKDFVTRAIIS----QFKAHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~~i~----~~~aH~~~IsaLaFSpd---G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s 418 (765)
..+|.|.+||+.+++... .+.+|..+|.+|+|+|+ |++|++++.|++ |+|||+.. +
T Consensus 168 ~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~-i~vwd~~~-------~--------- 230 (450)
T 2vdu_B 168 DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH-IKISHYPQ-------C--------- 230 (450)
T ss_dssp ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC-EEEEEESC-------T---------
T ss_pred eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc-EEEEECCC-------C---------
Confidence 357889999998876544 78899999999999999 999999999765 99999854 2
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 419 ~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
..+..+..|+ ...|.+++|+ |+++|++++.|++|+|||+.....
T Consensus 231 -~~~~~~~~~h-~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 231 -FIVDKWLFGH-KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN 274 (450)
T ss_dssp -TCEEEECCCC-SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE
T ss_pred -ceeeeeecCC-CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence 2445544453 4579999999 999999999999999999987543
No 118
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.73 E-value=1.7e-16 Score=172.70 Aligned_cols=55 Identities=11% Similarity=0.189 Sum_probs=47.2
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeE-EEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPIS-ALCFDPSGTLLVTASVYGNNINIFRI 399 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~Is-aLaFSpdG~lLATaS~dGt~IrVWdi 399 (765)
++..||+|+|||+.+++++.+|++|...+. +++|||||++|||||.|++ |||||+
T Consensus 300 SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T-IklWd~ 355 (356)
T 2w18_A 300 AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN-IFVYHY 355 (356)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC-EEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc-EEEecC
Confidence 455789999999999999999999987655 6999999999999999765 999995
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=9.7e-17 Score=171.55 Aligned_cols=104 Identities=15% Similarity=0.181 Sum_probs=83.6
Q ss_pred ccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 344 DMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
+++.||+|+|||+.+++.+..+. .|..+|.+++|+|+|.+||+|+.||. |+|||+.. + ..+
T Consensus 144 s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~-i~iwd~~~-------~----------~~~ 205 (343)
T 3lrv_A 144 WADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI-LDVYNLSS-------P----------DQA 205 (343)
T ss_dssp EEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC-EEEEESSC-------T----------TSC
T ss_pred EEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE-EEEEECCC-------C----------CCC
Confidence 45689999999999999877764 45668999999999999999999775 99999965 2 122
Q ss_pred -EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCc
Q 004255 423 -YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 467 (765)
Q Consensus 423 -~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~ 467 (765)
..+. +.+...|.+|+|+|||++|+++++ ++|+|||+.......
T Consensus 206 ~~~~~-~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 206 SSRFP-VDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTL 249 (343)
T ss_dssp CEECC-CCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCB
T ss_pred ccEEe-ccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcce
Confidence 3443 323467999999999999999995 499999998755433
No 120
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.72 E-value=1.4e-15 Score=157.84 Aligned_cols=225 Identities=14% Similarity=0.127 Sum_probs=148.6
Q ss_pred CEEEEEECCCCeEEEEEeCC---CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 004255 173 TAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~---s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~ 246 (765)
++|+|||+.+|++++.++++ ..|.+|++++ ++||+|. ++.|++||+.++++++++..|...
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~------------- 111 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------- 111 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-------------
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce-------------
Confidence 68999999999999999754 4799999988 6787765 567999999999999998877652
Q ss_pred cceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCC
Q 004255 247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (765)
Q Consensus 247 ~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~ 326 (765)
...++..++.|+.++.+.... .+..... .. ..+++.++... .
T Consensus 112 ~~~~~~~~~~l~s~~~~~~~~-----~~~~~~~-----------~~----------------~~~~~~~~~~~------~ 153 (318)
T 4ggc_A 112 VGSLSWNSYILSSGSRSGHIH-----HHDVRVA-----------EH----------------HVATLSGHSQE------V 153 (318)
T ss_dssp EEEEEEETTEEEEEETTSEEE-----EEETTSS-----------SC----------------EEEEEECCSSC------E
T ss_pred EEEeecCCCEEEEEecCCceE-----eeecCCC-----------ce----------------eEEEEcCccCc------e
Confidence 233455558888877653211 0110000 00 00111111100 0
Q ss_pred CCccCCCccccccccccccCCCCeEEEEECCCCc----EEEEeccCCCCeEEEEECCCCCEE---EEEEcCCCEEEEEeC
Q 004255 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSGTLL---VTASVYGNNINIFRI 399 (765)
Q Consensus 327 ~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~----~i~~~~aH~~~IsaLaFSpdG~lL---ATaS~dGt~IrVWdi 399 (765)
....+.+.++ .++++..||+|+|||+.+++ .......|..+|.+++|+|++..+ ++++. +..|+|||.
T Consensus 154 ~~~~~~~~~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~i~lwd~ 228 (318)
T 4ggc_A 154 CGLRWAPDGR----HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS-DRHIRIWNV 228 (318)
T ss_dssp EEEEECTTSS----EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT-TCEEEEEET
T ss_pred EEEEEcCCCC----EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC-CCEEEEEec
Confidence 0011111111 23467789999999998865 345566789999999999976643 34445 456999998
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCCCCccccccc
Q 004255 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS--SKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 400 ~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S--~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
.. + ....... +...|..++|+|+++++++++ .|++|+|||+........+.+|.
T Consensus 229 ~~-------~----------~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~ 284 (318)
T 4ggc_A 229 CS-------G----------ACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT 284 (318)
T ss_dssp TT-------C----------CEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS
T ss_pred cc-------c----------ccccccc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC
Confidence 54 1 2222222 234689999999999988765 79999999998766555667774
No 121
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.72 E-value=3.8e-16 Score=164.50 Aligned_cols=260 Identities=13% Similarity=0.040 Sum_probs=160.9
Q ss_pred CcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCE
Q 004255 95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA 174 (765)
Q Consensus 95 g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~t 174 (765)
.+..+++..|.+.|.+|++.|+. ....+|++.+. +++
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~----------~~g~~l~~~~~---------------------------------dg~ 65 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPT----------LPGNFLIAGSW---------------------------------AND 65 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTT----------SSSEEEEEEET---------------------------------TSE
T ss_pred cceeEeccCCCCceEEEEEcCCC----------CCceEEEEECC---------------------------------CCc
Confidence 34566788999999999999741 00236654221 368
Q ss_pred EEEEECCC-CeEE-EEEe-CCCCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 004255 175 VRFYSFQS-HCYE-HVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (765)
Q Consensus 175 V~lWdlkt-g~~v-~tL~-~~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (765)
|+|||+.+ ++.+ ..+. +...|.++++++ ++|+++. ++.|++||+.+++.+. +..|..+ ..
T Consensus 66 i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~-------------v~ 131 (368)
T 3mmy_A 66 VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAP-------------VK 131 (368)
T ss_dssp EEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSC-------------EE
T ss_pred EEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCc-------------eE
Confidence 99999997 6555 6665 457999999987 5777765 5679999999988665 3445442 34
Q ss_pred eeEE--cc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCC
Q 004255 249 PMAV--GP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (765)
Q Consensus 249 ~~Al--sp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~ 324 (765)
.+++ ++ ++|++++.+..+ ..|+..+.. .+ .++....
T Consensus 132 ~~~~~~~~~~~~l~~~~~dg~i-----~vwd~~~~~------------~~----------------~~~~~~~------- 171 (368)
T 3mmy_A 132 TIHWIKAPNYSCVMTGSWDKTL-----KFWDTRSSN------------PM----------------MVLQLPE------- 171 (368)
T ss_dssp EEEEEECSSCEEEEEEETTSEE-----EEECSSCSS------------CS----------------EEEECSS-------
T ss_pred EEEEEeCCCCCEEEEccCCCcE-----EEEECCCCc------------EE----------------EEEecCC-------
Confidence 5777 55 678887765311 123322210 00 0000000
Q ss_pred CCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE-e-ccCCCCeEEEEECCCCCE----EEEEEcCCCEEEEEe
Q 004255 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ-F-KAHTSPISALCFDPSGTL----LVTASVYGNNINIFR 398 (765)
Q Consensus 325 s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~-~-~aH~~~IsaLaFSpdG~l----LATaS~dGt~IrVWd 398 (765)
......+.. .....+..++.+.+||+........ + ..+...+.++++.+++.. |++++.+| .|+|||
T Consensus 172 ~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg-~i~i~~ 244 (368)
T 3mmy_A 172 RCYCADVIY------PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG-RVAIHY 244 (368)
T ss_dssp CEEEEEEET------TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTS-EEEEEE
T ss_pred CceEEEecC------CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCC-cEEEEe
Confidence 000000000 0122455688999999987654332 2 234556677777666554 99999966 599999
Q ss_pred CCCCcccCCCCCCccccCCcceEEEEEeccccc-----------ccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCc
Q 004255 399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----------ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 467 (765)
Q Consensus 399 i~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~-----------a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~ 467 (765)
+.... ....+..+. ++.. ..|.+++|+||+++|++++.||+|+|||+.......
T Consensus 245 ~~~~~--------------~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~ 309 (368)
T 3mmy_A 245 INPPN--------------PAKDNFTFK-CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK 309 (368)
T ss_dssp SSCSC--------------HHHHSEEEE-CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred cCCCC--------------ccccceeee-eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE
Confidence 96520 001223332 2211 159999999999999999999999999998654444
Q ss_pred cccccc
Q 004255 468 GFQTLS 473 (765)
Q Consensus 468 ~~~~h~ 473 (765)
.+..|.
T Consensus 310 ~~~~~~ 315 (368)
T 3mmy_A 310 TSEQLD 315 (368)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 445553
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.72 E-value=3e-15 Score=163.39 Aligned_cols=229 Identities=11% Similarity=0.133 Sum_probs=159.7
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceE-----eeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCC
Q 004255 74 FKQVLLLGYQNG-FQVLDVEDASNFNE-----LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPG 147 (765)
Q Consensus 74 ~~~vL~~G~~~G-~qVWdv~~~g~~~e-----lls~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~ 147 (765)
.+++++++..++ +++||++ .+++.. .+..|.+.|..+++.|+ ..+++. +..
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~~~s-~~~-------- 189 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDIN-SGQTVRLSPPEKYKKKLGFVETISIPEH-------------NELWVS-QMQ-------- 189 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETT-TCCEEEECCCHHHHTTCCEEEEEEEGGG-------------TEEEEE-EGG--------
T ss_pred CCeEEEEeCCCCeEEEEECC-CCeEeeecCcccccccCCceeEEEEcCC-------------CEEEEE-ECC--------
Confidence 467888887765 9999995 465655 33466788999998753 225543 221
Q ss_pred CCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeE-EEE-eCCeEEEEECCCCc
Q 004255 148 QNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIV-AVG-LATQIYCFDALTLE 222 (765)
Q Consensus 148 ~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~L-aV~-~~~~I~iwD~~t~~ 222 (765)
+++|++||+++++.+.++..+ ..+..+++++ +.| +++ .++.|++||+.+++
T Consensus 190 ------------------------d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 190 ------------------------ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp ------------------------GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred ------------------------CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 368999999999999999754 5899999987 455 445 35689999999987
Q ss_pred eeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhh
Q 004255 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME 300 (765)
Q Consensus 223 ~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d 300 (765)
.+..+..+.. ...++++| ++|++++... +
T Consensus 246 ~~~~~~~~~~--------------~~~~~~~~~g~~l~~~~~~~--------------------------~--------- 276 (433)
T 3bws_A 246 EIRKTDKIGL--------------PRGLLLSKDGKELYIAQFSA--------------------------S--------- 276 (433)
T ss_dssp EEEECCCCSE--------------EEEEEECTTSSEEEEEEEES--------------------------C---------
T ss_pred EEEEecCCCC--------------ceEEEEcCCCCEEEEEECCC--------------------------C---------
Confidence 7655433211 12345554 3444332100 0
Q ss_pred hhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCC
Q 004255 301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS 380 (765)
Q Consensus 301 ~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpd 380 (765)
. ....||.|++||+.+++.+..+ .|...+.+++|+|+
T Consensus 277 -----------------------------------~-------~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~ 313 (433)
T 3bws_A 277 -----------------------------------N-------QESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNT 313 (433)
T ss_dssp -----------------------------------T-------TCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSS
T ss_pred -----------------------------------c-------cccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCC
Confidence 0 0025789999999999877665 55668999999999
Q ss_pred CCEE-EEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC--------
Q 004255 381 GTLL-VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-------- 451 (765)
Q Consensus 381 G~lL-ATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~-------- 451 (765)
|+.| ++++. +..|++||+.. + ..+..+. ....+.+++|+|||++|++++.
T Consensus 314 g~~l~~~~~~-~~~v~v~d~~~-------~----------~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 372 (433)
T 3bws_A 314 ENKIYVSDMC-CSKIEVYDLKE-------K----------KVQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEG 372 (433)
T ss_dssp TTEEEEEETT-TTEEEEEETTT-------T----------EEEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTC
T ss_pred CCEEEEEecC-CCEEEEEECCC-------C----------cEEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccc
Confidence 9865 55555 55799999854 2 3444443 2345899999999999998887
Q ss_pred -------CCcEEEEeCCC
Q 004255 452 -------KGTCHVFVLSP 462 (765)
Q Consensus 452 -------dgTVhIwdl~~ 462 (765)
||+|++||+..
T Consensus 373 ~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 373 YLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp TTSCCSSCCEEEEEETTT
T ss_pred cccccccceEEEEEECCC
Confidence 57999999865
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.71 E-value=5.9e-16 Score=169.63 Aligned_cols=199 Identities=9% Similarity=0.031 Sum_probs=116.3
Q ss_pred CCEEEEEECCCCeEEEEE-----e-CCCCEEEEEecC----------CeEEEEe-CCeEEEEECCCCceeEEEEecCCcc
Q 004255 172 PTAVRFYSFQSHCYEHVL-----R-FRSSVCMVRCSP----------RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQ 234 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL-----~-~~s~V~sV~~s~----------~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~ 234 (765)
+++|+|||+++++..... . +.+.|.+|+|+| ++||++. |++|+|||+.+.+++..+..+..+
T Consensus 110 d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~- 188 (393)
T 4gq1_A 110 DNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP- 188 (393)
T ss_dssp TSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSC-
T ss_pred CCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCC-
Confidence 479999999999875432 2 346999999975 5788765 567999999988887777776653
Q ss_pred cCCCCccccccccceeEEcc---ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccce
Q 004255 235 LAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK 311 (765)
Q Consensus 235 ~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~k 311 (765)
...++|+| ++|+.++.+
T Consensus 189 ------------v~~v~~~p~~~~~l~~~~~d------------------------------------------------ 208 (393)
T 4gq1_A 189 ------------GISVQFRPSNPNQLIVGERN------------------------------------------------ 208 (393)
T ss_dssp ------------EEEEEEETTEEEEEEEEETT------------------------------------------------
T ss_pred ------------cEEEEECCCCCceEEecCCC------------------------------------------------
Confidence 24567766 356665543
Q ss_pred eecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc-------------------------EEEEec
Q 004255 312 TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-------------------------IISQFK 366 (765)
Q Consensus 312 tls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~-------------------------~i~~~~ 366 (765)
|+|+|||+.+++ ......
T Consensus 209 -------------------------------------~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 209 -------------------------------------GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp -------------------------------------SEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred -------------------------------------CEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 233333332221 112335
Q ss_pred cCCCCeEEEEEC-CCCCEEEEEEcCCCEEEEEeCCCCcccCC-CCCCccccCCc-ceEEEEEecccccccEEEEEEcc--
Q 004255 367 AHTSPISALCFD-PSGTLLVTASVYGNNINIFRIMPSCMRSG-SGNHKYDWNSS-HVHLYKLHRGITSATIQDICFSH-- 441 (765)
Q Consensus 367 aH~~~IsaLaFS-pdG~lLATaS~dGt~IrVWdi~~~~~~~~-sG~~~~~~~~s-~~~l~~l~rG~~~a~I~slaFSp-- 441 (765)
+|...|.+++|+ |||++|++++.|+ .++|||+........ .+.....+... ......+. ....+..+.|+|
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~d~-~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 327 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCKSG-AWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS---LFPSLLGACPHPRY 327 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECTTS-EEEEEEC-------------------CCSCSEEEEC---SSCCSSCCEECSSC
T ss_pred cccccceeeeeecCCCCEEEEEeCCC-CEEEEECccCCCCceEeeecCccccEEEcccccccc---ccCcceeEEEccCC
Confidence 788999999997 8999999999955 699999865211000 00000000000 00011111 111122234443
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCcccccc
Q 004255 442 YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (765)
Q Consensus 442 Dg~~Las~S~dgTVhIwdl~~~gg~~~~~~h 472 (765)
|+.++++++.||+|+|||+.+......+..|
T Consensus 328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~ 358 (393)
T 4gq1_A 328 MDYFATAHSQHGLIQLINTYEKDSNSIPIQL 358 (393)
T ss_dssp TTEEEEEETTTTEEEEEETTCTTCCEEEEEC
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 4557888899999999999875544444444
No 124
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.71 E-value=4e-15 Score=164.88 Aligned_cols=236 Identities=14% Similarity=0.079 Sum_probs=161.4
Q ss_pred CeEEEEEec------CcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCC
Q 004255 75 KQVLLLGYQ------NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQ 148 (765)
Q Consensus 75 ~~vL~~G~~------~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~ 148 (765)
.+++.++.. ..+++||++ +.....+..|.+.|..+++.|+. ..||.++.+.
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~--g~~~~~l~~~~~~v~~~~~Spdg-------------~~la~~s~~~-------- 200 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYD--GYNQFVVHRSPQPLMSPAWSPDG-------------SKLAYVTFES-------- 200 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETT--SCSCEEEEEESSCEEEEEECTTS-------------SEEEEEECTT--------
T ss_pred CEEEEEEecCCCCccceEEEEcCC--CCCCEEEeCCCCcceeeEEcCCC-------------CEEEEEEecC--------
Confidence 355555554 359999995 33456677788899999999852 2666644321
Q ss_pred CcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEE-EEeC---CeEEEEECCCCc
Q 004255 149 NRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVA-VGLA---TQIYCFDALTLE 222 (765)
Q Consensus 149 ~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~La-V~~~---~~I~iwD~~t~~ 222 (765)
...+|++||+++++......+...+.+++++| +.|+ ++.. ..|++||+.+++
T Consensus 201 ----------------------~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~ 258 (415)
T 2hqs_A 201 ----------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 258 (415)
T ss_dssp ----------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred ----------------------CCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence 02589999999999876666778999999998 5676 4432 359999999886
Q ss_pred eeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhh
Q 004255 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME 300 (765)
Q Consensus 223 ~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d 300 (765)
. ..+..+.. ....++++| ++|++++..
T Consensus 259 ~-~~l~~~~~-------------~~~~~~~spdg~~l~~~s~~------------------------------------- 287 (415)
T 2hqs_A 259 I-RQVTDGRS-------------NNTEPTWFPDSQNLAFTSDQ------------------------------------- 287 (415)
T ss_dssp E-EECCCCSS-------------CEEEEEECTTSSEEEEEECT-------------------------------------
T ss_pred E-EeCcCCCC-------------cccceEECCCCCEEEEEECC-------------------------------------
Confidence 5 34433332 123456655 455554321
Q ss_pred hhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCC
Q 004255 301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS 380 (765)
Q Consensus 301 ~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpd 380 (765)
.....|.+||+.+++. ..+..|...+.+++|+||
T Consensus 288 ---------------------------------------------~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd 321 (415)
T 2hqs_A 288 ---------------------------------------------AGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSD 321 (415)
T ss_dssp ---------------------------------------------TSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTT
T ss_pred ---------------------------------------------CCCcEEEEEECCCCCE-EEEecCCCcccCeEECCC
Confidence 0012577889888764 456677788999999999
Q ss_pred CCEEEEEEcCC--CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC---cE
Q 004255 381 GTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG---TC 455 (765)
Q Consensus 381 G~lLATaS~dG--t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dg---TV 455 (765)
|++|++++.++ ..|.+||+.. + .+..+..+ ..+.+++|+|||++|+.++.++ .+
T Consensus 322 G~~l~~~~~~~g~~~i~~~d~~~-------~-----------~~~~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l 380 (415)
T 2hqs_A 322 GKFMVMVSSNGGQQHIAKQDLAT-------G-----------GVQVLSST---FLDETPSLAPNGTMVIYSSSQGMGSVL 380 (415)
T ss_dssp SSEEEEEEECSSCEEEEEEETTT-------C-----------CEEECCCS---SSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred CCEEEEEECcCCceEEEEEECCC-------C-----------CEEEecCC---CCcCCeEEcCCCCEEEEEEcCCCccEE
Confidence 99999988752 4799999854 2 22334322 2689999999999999999887 78
Q ss_pred EEEeCCCCCCCcccccccC
Q 004255 456 HVFVLSPFGGDSGFQTLSS 474 (765)
Q Consensus 456 hIwdl~~~gg~~~~~~h~~ 474 (765)
.+||+.. +....+..|..
T Consensus 381 ~~~d~~g-~~~~~l~~~~~ 398 (415)
T 2hqs_A 381 NLVSTDG-RFKARLPATDG 398 (415)
T ss_dssp EEEETTS-CCEEECCCSSS
T ss_pred EEEECCC-CcEEEeeCCCC
Confidence 9999862 33344555543
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.70 E-value=8.1e-16 Score=183.34 Aligned_cols=211 Identities=14% Similarity=0.162 Sum_probs=145.4
Q ss_pred eEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 004255 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (765)
Q Consensus 98 ~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~l 177 (765)
..++..|.++|.++++.|+ ..+|++.+. +++|+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~d-------------g~~latg~~---------------------------------dg~I~v 35 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYY-------------GKRLATCSS---------------------------------DKTIKI 35 (753)
T ss_dssp ------CCCCEEEECCCSS-------------SCCEEEEET---------------------------------TTEEEE
T ss_pred eeecccCcceeEEEEECCC-------------CCeEEEEEC---------------------------------CCcEEE
Confidence 3567889999999999874 235654221 368999
Q ss_pred EECC--CCeEEEEEeC-CCCEEEEEec----CCeEEEEe-CCeEEEEECCCCc--eeEEEEecCCcccCCCCcccccccc
Q 004255 178 YSFQ--SHCYEHVLRF-RSSVCMVRCS----PRIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGY 247 (765)
Q Consensus 178 Wdlk--tg~~v~tL~~-~s~V~sV~~s----~~~LaV~~-~~~I~iwD~~t~~--~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (765)
||+. +++.+.++.. .+.|.+++++ .++|+++. ++.|++||+.+++ ....+..|..+ .
T Consensus 36 wd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~-------------V 102 (753)
T 3jro_A 36 FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS-------------V 102 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------E
T ss_pred EecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCC-------------e
Confidence 9998 5577778875 4699999997 35677655 5689999998876 33333333331 1
Q ss_pred ceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (765)
Q Consensus 248 ~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~ 327 (765)
..++++| +.. +.
T Consensus 103 ~~v~~sp-------~~~--------------------------~~----------------------------------- 114 (753)
T 3jro_A 103 NSVQWAP-------HEY--------------------------GP----------------------------------- 114 (753)
T ss_dssp EEEEECC-------GGG--------------------------CS-----------------------------------
T ss_pred EEEEECC-------CCC--------------------------CC-----------------------------------
Confidence 2233322 100 00
Q ss_pred CccCCCccccccccccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEECC-------------CCCEEEEEEcCCC
Q 004255 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDP-------------SGTLLVTASVYGN 392 (765)
Q Consensus 328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~--~i~~~~aH~~~IsaLaFSp-------------dG~lLATaS~dGt 392 (765)
.++.++.||.|+|||+.++. ....+.+|..+|.+++|+| +|.+|++++.||+
T Consensus 115 -------------~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~ 181 (753)
T 3jro_A 115 -------------LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181 (753)
T ss_dssp -------------EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC
T ss_pred -------------EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe
Confidence 01234578999999998873 4556789999999999999 5999999999776
Q ss_pred EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC---CCEEEEEeCCCcEEEEeCCCCC
Q 004255 393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY---SQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 393 ~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD---g~~Las~S~dgTVhIwdl~~~g 464 (765)
|++||+... . .....+..+. + +...|.+++|+|| +++|++++.||+|+|||+....
T Consensus 182 -I~iwd~~~~-------~------~~~~~~~~~~-~-h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 182 -VKIWKYNSD-------A------QTYVLESTLE-G-HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp -EEEEEEETT-------T------TEEEEEEEEC-C-CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred -EEEEeccCC-------c------ccceeeeeec-C-CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 999998641 0 0012333443 3 3457999999999 9999999999999999998754
No 126
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.68 E-value=4.3e-14 Score=147.47 Aligned_cols=280 Identities=11% Similarity=0.075 Sum_probs=164.3
Q ss_pred eEEEEEecC-cEEEEEccCCCcceEeeeeccC--CEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255 76 QVLLLGYQN-GFQVLDVEDASNFNELVSKRDG--PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (765)
Q Consensus 76 ~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg--~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~ 152 (765)
++|+++..+ .+++||+. .+++...+..... .+..+++.|+ ...|+++..+
T Consensus 2 ~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~s~d-------------g~~l~v~~~~------------- 54 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTE-KMAVDKVITIADAGPTPMVPMVAPG-------------GRIAYATVNK------------- 54 (337)
T ss_dssp EEEEEEETTTEEEEEETT-TTEEEEEEECTTCTTCCCCEEECTT-------------SSEEEEEETT-------------
T ss_pred cEEEEcCCCCeEEEEECC-CCcEEEEEEcCCCCCCccceEEcCC-------------CCEEEEEeCC-------------
Confidence 356666555 59999995 4555555543321 4677788764 2244443321
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------CEEEEEecC--CeEEEEe-------------CC
Q 004255 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSP--RIVAVGL-------------AT 211 (765)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s------~V~sV~~s~--~~LaV~~-------------~~ 211 (765)
.+.|.+||+.+++.+..+.+.. .+..+++++ +.|+++. ++
T Consensus 55 -------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T 1pby_B 55 -------------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp -------------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred -------------------CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCc
Confidence 2589999999999999888754 677888876 5777773 57
Q ss_pred eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCC--ccccCCCCCC--CCCCCC
Q 004255 212 QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNS--GRLSPQNLTP--SGVSPS 285 (765)
Q Consensus 212 ~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~--G~~s~~~lt~--~~~s~s 285 (765)
.|++||+.+++.+..+..... ...++++| ++|++++....+... +... ..+.. ...+..
T Consensus 116 ~i~v~d~~~~~~~~~~~~~~~--------------~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~ 180 (337)
T 1pby_B 116 RVALYDAETLSRRKAFEAPRQ--------------ITMLAWARDGSKLYGLGRDLHVMDPEAGTLV-EDKPIQSWEAETY 180 (337)
T ss_dssp EEEEEETTTTEEEEEEECCSS--------------CCCEEECTTSSCEEEESSSEEEEETTTTEEE-EEECSTTTTTTTB
T ss_pred eEEEEECCCCcEEEEEeCCCC--------------cceeEECCCCCEEEEeCCeEEEEECCCCcEe-eeeeccccCCCce
Confidence 899999999987776654221 13467887 677776433222211 1100 00000 000111
Q ss_pred cCCCCCcceeeehhhhhhhhhcccceee-cccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE-E
Q 004255 286 TSPGGSSLVARYAMEHSKQFAAGLSKTL-SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII-S 363 (765)
Q Consensus 286 ~sp~~gslva~~a~d~~k~la~G~~ktl-s~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i-~ 363 (765)
++|++..+.+.... . +.+ .-|......++ . .........|.+||+.+++.. .
T Consensus 181 ~s~dg~~l~~~~~~-------~---~~~~~~~~~~~~~~~-----------~-----~~~~~~~~~v~~~d~~~~~~~~~ 234 (337)
T 1pby_B 181 AQPDVLAVWNQHES-------S---GVMATPFYTARKDID-----------P-----ADPTAYRTGLLTMDLETGEMAMR 234 (337)
T ss_dssp CCCBCCCCCCCCTT-------T---TEEEEEEEEEBTTSC-----------T-----TSGGGEEEEEEEEETTTCCEEEE
T ss_pred eCCCccEEeeeccC-------C---Cceeeeeeccccccc-----------c-----ccccccccceEEEeCCCCCceEe
Confidence 12221111000000 0 000 00000000000 0 000011126899999998864 3
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 004255 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (765)
Q Consensus 364 ~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg 443 (765)
.+..|...+.+++|+|||++|+++ ++ .|.+||+.. + ..+..+..+ ..+.+++|+|||
T Consensus 235 ~~~~~~~~~~~~~~s~dg~~l~~~--~~-~v~~~d~~~-------~----------~~~~~~~~~---~~~~~~~~s~dg 291 (337)
T 1pby_B 235 EVRIMDVFYFSTAVNPAKTRAFGA--YN-VLESFDLEK-------N----------ASIKRVPLP---HSYYSVNVSTDG 291 (337)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEE--ES-EEEEEETTT-------T----------EEEEEEECS---SCCCEEEECTTS
T ss_pred ecCCCCCceeeEEECCCCCEEEEe--CC-eEEEEECCC-------C----------cCcceecCC---CceeeEEECCCC
Confidence 355677788999999999999988 24 599999854 3 344444432 347889999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCC
Q 004255 444 QWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 444 ~~Las~S~dgTVhIwdl~~~gg 465 (765)
++|++++.+++|++||+.....
T Consensus 292 ~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 292 STVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp CEEEEESBSSEEEEEETTTCCE
T ss_pred CEEEEEcCCCcEEEEECcCCcE
Confidence 9999999999999999986543
No 127
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.9e-15 Score=173.84 Aligned_cols=240 Identities=10% Similarity=0.035 Sum_probs=155.5
Q ss_pred CCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCC-C------Cc--cccCCEEEEEEcCCCC
Q 004255 73 VFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGC-E------GF--RKLHPFLLVVAGEDTN 142 (765)
Q Consensus 73 ~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~-d------~f--~~srpLLavv~~d~~~ 142 (765)
.+++.|++++.++ ++ |.. ..+.+.+|.+.|..|+++|++....-. + .+ .+..+..++ .-.
T Consensus 25 pDG~~iASas~D~TV~--d~~----~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~v-awS--- 94 (588)
T 2j04_A 25 RDGTLYLTTFPDISIG--QPK----YAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVC-KPS--- 94 (588)
T ss_dssp TTSCEEEECSSSEEEE--EEC----CCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEE-EEC---
T ss_pred CCCCEEEEEcCCceee--ccc----ccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEE-EEC---
Confidence 3588999988887 66 642 234456788889999999876221000 0 01 111111111 100
Q ss_pred CCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------CEEEEEecC--CeEEEEe-CCeE
Q 004255 143 TLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSP--RIVAVGL-ATQI 213 (765)
Q Consensus 143 ~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s------~V~sV~~s~--~~LaV~~-~~~I 213 (765)
.+|.+-.. ...+++|++||.++ ++..+. +. .|.+|+|+| ++||+|. +++|
T Consensus 95 --------------PdG~~LAs----~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 95 --------------PIDDWMAV----LSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp --------------SSSSCEEE----EETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred --------------CCCCEEEE----EeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 12221100 11357899999654 777777 54 499999998 7888766 5689
Q ss_pred EEEECCCCce-------eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255 214 YCFDALTLEN-------KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (765)
Q Consensus 214 ~iwD~~t~~~-------l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~ 286 (765)
+|||+.+++. +.++..+... + . + ....++++| +
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~~~g----h-~---~-~V~sVawSP-------d------------------------ 193 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLSDAG----S-K---D-WVTHIVWYE-------D------------------------ 193 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECSCTT----C-C---C-CEEEEEEET-------T------------------------
T ss_pred EEEECCCCccccccceeeeeeeccccc----c-c---c-cEEEEEEcC-------C------------------------
Confidence 9999998753 4555433210 0 0 0 112233322 1
Q ss_pred CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE---EE
Q 004255 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI---IS 363 (765)
Q Consensus 287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~---i~ 363 (765)
| ++ .++.|++|++||+.+++. ..
T Consensus 194 ----g-La-------------------------------------------------ass~D~tVrlWd~~~~~~~~~~~ 219 (588)
T 2j04_A 194 ----V-LV-------------------------------------------------AALSNNSVFSMTVSASSHQPVSR 219 (588)
T ss_dssp ----E-EE-------------------------------------------------EEETTCCEEEECCCSSSSCCCEE
T ss_pred ----c-EE-------------------------------------------------EEeCCCeEEEEECCCCcccccee
Confidence 0 11 223588999999988773 45
Q ss_pred Ee-ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE--c
Q 004255 364 QF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--S 440 (765)
Q Consensus 364 ~~-~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaF--S 440 (765)
++ .+|...|.+++|+ |+.||+++. + .|++||+.. + ++..+..| +.+.|++++| |
T Consensus 220 tL~~~h~~~V~svaFs--g~~LASa~~-~-tIkLWd~~~-------~-----------~~~~~~~g-h~~~V~~va~~~s 276 (588)
T 2j04_A 220 MIQNASRRKITDLKIV--DYKVVLTCP-G-YVHKIDLKN-------Y-----------SISSLKTG-SLENFHIIPLNHE 276 (588)
T ss_dssp EEECCCSSCCCCEEEE--TTEEEEECS-S-EEEEEETTT-------T-----------EEEEEECS-CCSCCCEEEETTC
T ss_pred eecccccCcEEEEEEE--CCEEEEEeC-C-eEEEEECCC-------C-----------eEEEEEcC-CCceEEEEEeeeC
Confidence 67 4899999999999 799999984 5 699999854 2 34344446 5577999999 9
Q ss_pred cCCCEEEEEeCCCcEEEEeCC
Q 004255 441 HYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 441 pDg~~Las~S~dgTVhIwdl~ 461 (765)
||++.|++++.||+ +||.++
T Consensus 277 ~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 277 KESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp SSCEEEEECSSCEE-EEEESS
T ss_pred CCCCEEEEEcCCCC-EEEeec
Confidence 99999999999999 999987
No 128
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.66 E-value=2.8e-14 Score=149.98 Aligned_cols=274 Identities=7% Similarity=-0.013 Sum_probs=166.8
Q ss_pred CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
+.+++++..++ +.+||++ .+++...+..+..++ .+++.|+ ...|+++..+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~-~~~~s~d-------------g~~l~~~~~~-------------- 60 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTD-TLEILNQITLGYDFV-DTAITSD-------------CSNVVVTSDF-------------- 60 (331)
T ss_dssp CEEEEEEGGGTEEEEEETT-TCCEEEEEECCCCEE-EEEECSS-------------SCEEEEEEST--------------
T ss_pred CEEEEEecCCCeEEEEeCc-ccceeeeEEccCCcc-eEEEcCC-------------CCEEEEEeCC--------------
Confidence 56677777655 9999995 577767666555666 8888874 2245543321
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-EEEEeCCCCEEE-EEecC--CeEEEEeCC----eEEEEECCCCceeE
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-EHVLRFRSSVCM-VRCSP--RIVAVGLAT----QIYCFDALTLENKF 225 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~-v~tL~~~s~V~s-V~~s~--~~LaV~~~~----~I~iwD~~t~~~l~ 225 (765)
.++|.+||+.+++. +..+........ +++++ ++|+++..+ .|++||+.+++.+.
T Consensus 61 ------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~ 122 (331)
T 3u4y_A 61 ------------------CQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS 122 (331)
T ss_dssp ------------------TCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE
T ss_pred ------------------CCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE
Confidence 25899999999997 777776654445 88887 577766655 89999999998877
Q ss_pred EEEecCCcccCCCCccccccccceeEEcc--ceEEEecCC-ceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhh
Q 004255 226 SVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNT-LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS 302 (765)
Q Consensus 226 tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~-~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~ 302 (765)
.+..... ...++++| ++|..+... .. ....|+.-. .+.+...
T Consensus 123 ~~~~~~~--------------~~~~~~spdg~~l~~~~~~~~~----~i~~~~~~~-----------~g~~~~~------ 167 (331)
T 3u4y_A 123 TIPIPYD--------------AVGIAISPNGNGLILIDRSSAN----TVRRFKIDA-----------DGVLFDT------ 167 (331)
T ss_dssp EEECCTT--------------EEEEEECTTSSCEEEEEETTTT----EEEEEEECT-----------TCCEEEE------
T ss_pred EEECCCC--------------ccceEECCCCCEEEEEecCCCc----eEEEEEECC-----------CCcEeec------
Confidence 7654332 13578888 555554321 10 000111000 0000000
Q ss_pred hhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE---EEEeccCCCCeEEEEECC
Q 004255 303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI---ISQFKAHTSPISALCFDP 379 (765)
Q Consensus 303 k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~---i~~~~aH~~~IsaLaFSp 379 (765)
. .+.+ ..........++++++... .....++.|.+||+.+++. +..+..+ ..+..++|+|
T Consensus 168 ---~---~~~~-------~~~~~~~~~~~spdg~~l~---v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~sp 230 (331)
T 3u4y_A 168 ---G---QEFI-------SGGTRPFNITFTPDGNFAF---VANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSR 230 (331)
T ss_dssp ---E---EEEE-------CSSSSEEEEEECTTSSEEE---EEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECT
T ss_pred ---C---Cccc-------cCCCCccceEECCCCCEEE---EEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECC
Confidence 0 0000 0000111223344443211 2344678999999999988 7777765 5668899999
Q ss_pred CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc--ccc---cEEEEEEccCCCEEEEEeC-CC
Q 004255 380 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI--TSA---TIQDICFSHYSQWIAIVSS-KG 453 (765)
Q Consensus 380 dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~--~~a---~I~slaFSpDg~~Las~S~-dg 453 (765)
||++|+.++..+..|.+||+.+ +. ...+..+..+. ... ...+++|+|||++|++++. ++
T Consensus 231 dg~~l~v~~~~~~~i~~~d~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 295 (331)
T 3u4y_A 231 DGSTVYVLTESTVDVFNFNQLS-------GT--------LSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR 295 (331)
T ss_dssp TSSEEEEECSSEEEEEEEETTT-------TE--------EEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT
T ss_pred CCCEEEEEEcCCCEEEEEECCC-------Cc--------eeeecccccccccCCCCcccccceEECCCCCEEEEecCCCC
Confidence 9998877766556799999864 21 11233333221 111 1356899999999876655 56
Q ss_pred cEEEEeCCC
Q 004255 454 TCHVFVLSP 462 (765)
Q Consensus 454 TVhIwdl~~ 462 (765)
+|.|||+..
T Consensus 296 ~v~v~d~~~ 304 (331)
T 3u4y_A 296 ELKVFTISG 304 (331)
T ss_dssp EEEEEETTS
T ss_pred cEEEEEecC
Confidence 999999975
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.65 E-value=5.9e-14 Score=161.71 Aligned_cols=287 Identities=15% Similarity=0.118 Sum_probs=176.9
Q ss_pred CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
++++++++.++ +.|||.+ ++++...+..+.. +..+++.|+ +.+|++...
T Consensus 149 ~~~~vs~~~d~~V~v~D~~-t~~~~~~i~~g~~-~~~v~~spd-------------g~~l~v~~~--------------- 198 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGD-SKKIVKVIDTGYA-VHISRMSAS-------------GRYLLVIGR--------------- 198 (543)
T ss_dssp GEEEEEEGGGTEEEEEETT-TCCEEEEEECSTT-EEEEEECTT-------------SCEEEEEET---------------
T ss_pred CEEEEEEcCCCeEEEEECC-CceEEEEEecCcc-cceEEECCC-------------CCEEEEECC---------------
Confidence 57888888776 9999995 5777777764333 889999875 236665332
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEEC--CCCeEEEEEeCCCCEEEEEecC------CeEEEEe--CCeEEEEECCCCce
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSF--QSHCYEHVLRFRSSVCMVRCSP------RIVAVGL--ATQIYCFDALTLEN 223 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdl--ktg~~v~tL~~~s~V~sV~~s~------~~LaV~~--~~~I~iwD~~t~~~ 223 (765)
+++|++||+ .+++++.++.....+..|++++ ++|+++. +++|.+||..|+++
T Consensus 199 ------------------d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~ 260 (543)
T 1nir_A 199 ------------------DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 260 (543)
T ss_dssp ------------------TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred ------------------CCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence 258999999 8999999999877889999986 5777764 57899999999999
Q ss_pred eEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhh
Q 004255 224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME 300 (765)
Q Consensus 224 l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d 300 (765)
+.++.+...... .+.+.. ......+++++ ++++....+..+ ..++..+. ..+.
T Consensus 261 ~~~i~~~g~~~~-~~~~~~-~~~v~~i~~s~~~~~~~vs~~~~g~i-----~vvd~~~~-----------~~l~------ 316 (543)
T 1nir_A 261 KQIVSTRGMTVD-TQTYHP-EPRVAAIIASHEHPEFIVNVKETGKV-----LLVNYKDI-----------DNLT------ 316 (543)
T ss_dssp EEEEECCEECSS-SCCEES-CCCEEEEEECSSSSEEEEEETTTTEE-----EEEECTTS-----------SSCE------
T ss_pred ceeecccCcccC-cccccc-CCceEEEEECCCCCEEEEEECCCCeE-----EEEEecCC-----------Ccce------
Confidence 998875321000 000000 00123455655 344443322111 01111000 0000
Q ss_pred hhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc----CCCCeEEEE
Q 004255 301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA----HTSPISALC 376 (765)
Q Consensus 301 ~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a----H~~~IsaLa 376 (765)
..++. .........++++++.. .+....+++|.|||+.+++++..+.. |......+
T Consensus 317 ---------~~~i~-------~~~~~~~~~~spdg~~l---~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 317 ---------VTSIG-------AAPFLHDGGWDSSHRYF---MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp ---------EEEEE-------CCSSCCCEEECTTSCEE---EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred ---------eEEec-------cCcCccCceECCCCCEE---EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 00000 00001122334444422 12344578999999999999988874 65544444
Q ss_pred ECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-----
Q 004255 377 FDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS----- 450 (765)
Q Consensus 377 FSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S----- 450 (765)
++|+ |.++||++..+.+|.|||+.+. +... ...+.+.++. ++ ...+..|+|||||++|++++
T Consensus 377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~------~~~~----~~~~~v~~l~-~~-g~~~~~v~~~pdg~~l~v~~~~~~~ 444 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGDGSISLIGTDPK------NHPQ----YAWKKVAELQ-GQ-GGGSLFIKTHPKSSHLYVDTTFNPD 444 (543)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTT------TCTT----TBTSEEEEEE-CS-CSCCCCEECCTTCCEEEECCTTCSS
T ss_pred CCCCCccEEEeccCCCceEEEEEeCCC------CCch----hcCeEEEEEE-cC-CCCceEEEcCCCCCcEEEecCCCCC
Confidence 5777 7778887644457999999652 1000 0114666665 22 23467899999999999988
Q ss_pred --CCCcEEEEeCCCCCC
Q 004255 451 --SKGTCHVFVLSPFGG 465 (765)
Q Consensus 451 --~dgTVhIwdl~~~gg 465 (765)
.+++|.|||+.+...
T Consensus 445 ~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 445 ARISQSVAVFDLKNLDA 461 (543)
T ss_dssp HHHHTCEEEEETTCTTS
T ss_pred cccCceEEEEECCCCCC
Confidence 278999999998654
No 130
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.3e-14 Score=166.88 Aligned_cols=232 Identities=11% Similarity=0.103 Sum_probs=150.3
Q ss_pred CcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCC-----EEEEEEecCCCCCCCCCCccccC
Q 004255 57 DQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGP-----VSFLQMQPFPVKDDGCEGFRKLH 130 (765)
Q Consensus 57 ~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~-----V~~v~~lP~p~~~~~~d~f~~sr 130 (765)
+.|.-+.|-. +++.|+++..+| ++|||.+. +...+. |+.+ |.+++++|+.
T Consensus 86 ~~V~~vawSP-------dG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG------------- 141 (588)
T 2j04_A 86 CYPRVCKPSP-------IDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIE------------- 141 (588)
T ss_dssp CCEEEEEECS-------SSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSS-------------
T ss_pred CcEEEEEECC-------CCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCC-------------
Confidence 4455555533 466788887776 99999643 666677 7664 9999999862
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe-------EEEEEeC-----CCCEEEE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC-------YEHVLRF-----RSSVCMV 198 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~-------~v~tL~~-----~s~V~sV 198 (765)
.+||+.+. +++|+|||++++. .+++++. .+.|++|
T Consensus 142 ~~LAsgs~---------------------------------DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sV 188 (588)
T 2j04_A 142 SSIVVGNE---------------------------------DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHI 188 (588)
T ss_dssp SCEEEEET---------------------------------TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEE
T ss_pred CEEEEEcC---------------------------------CCEEEEEECCCCccccccceeeeeeecccccccccEEEE
Confidence 36776331 3699999999986 4777753 2499999
Q ss_pred EecCCeEEE-EeCCeEEEEECCCCcee---EEEE-ecCCcccCCCCccccccccceeEEccceEEEecCCceecCCcccc
Q 004255 199 RCSPRIVAV-GLATQIYCFDALTLENK---FSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLS 273 (765)
Q Consensus 199 ~~s~~~LaV-~~~~~I~iwD~~t~~~l---~tl~-t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s 273 (765)
+++|.-|++ +.++.|++||+.+.+.. +++. .|.. ....++|+..+||
T Consensus 189 awSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~-------------~V~svaFsg~~LA--------------- 240 (588)
T 2j04_A 189 VWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRR-------------KITDLKIVDYKVV--------------- 240 (588)
T ss_dssp EEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSS-------------CCCCEEEETTEEE---------------
T ss_pred EEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccC-------------cEEEEEEECCEEE---------------
Confidence 999843554 55678999999887632 4453 2221 0122333111111
Q ss_pred CCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEE
Q 004255 274 PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVV 353 (765)
Q Consensus 274 ~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~I 353 (765)
.+. +|+|++
T Consensus 241 ----------------------------------------------------------------------Sa~-~~tIkL 249 (588)
T 2j04_A 241 ----------------------------------------------------------------------LTC-PGYVHK 249 (588)
T ss_dssp ----------------------------------------------------------------------EEC-SSEEEE
T ss_pred ----------------------------------------------------------------------EEe-CCeEEE
Confidence 122 589999
Q ss_pred EECCCCcEEEEeccCCCCeEEEEE--CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCC-------ccccCCcceEEEE
Q 004255 354 KDFVTRAIISQFKAHTSPISALCF--DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH-------KYDWNSSHVHLYK 424 (765)
Q Consensus 354 wDl~s~~~i~~~~aH~~~IsaLaF--SpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~-------~~~~~~s~~~l~~ 424 (765)
||+.+++......+|...|..++| +|||+.|++|+.+|+ |||..... ..+..+.. -..|......+..
T Consensus 250 Wd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~--klw~~d~~-~~spd~~l~a~~d~~v~lW~~~g~~l~~ 326 (588)
T 2j04_A 250 IDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY--KVLLEDEL-HVTADNIIAPYLEKKFKKWSTIWNEFNN 326 (588)
T ss_dssp EETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE--EEEESSSE-EEECCCSSHHHHHHHHHHTTTTTTSSSS
T ss_pred EECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC--EEEeeccE-EECCCceEEEEcCCEEEEEECCCCceee
Confidence 999988874444489999999999 999999999999664 99997321 00001110 0011111111221
Q ss_pred EecccccccEEEEEEccCCCEEEEEe
Q 004255 425 LHRGITSATIQDICFSHYSQWIAIVS 450 (765)
Q Consensus 425 l~rG~~~a~I~slaFSpDg~~Las~S 450 (765)
+ .+ ...|++++|||||+.||+++
T Consensus 327 ~-~~--~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 327 Y-ET--TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp S-CC--EEEEEEEEECTTSSEEEEEE
T ss_pred e-cc--ceEEEEEEECCCCCEEEEEE
Confidence 1 11 34599999999999999887
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.61 E-value=1e-13 Score=153.46 Aligned_cols=172 Identities=18% Similarity=0.155 Sum_probs=121.8
Q ss_pred CEEEEEECCCCeEEEEE-eCCCCEEEEEecC--CeEEEEe-CC---eEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 004255 173 TAVRFYSFQSHCYEHVL-RFRSSVCMVRCSP--RIVAVGL-AT---QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL-~~~s~V~sV~~s~--~~LaV~~-~~---~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~ 245 (765)
++|++||+..++ +..+ .....|.+++++| +.|+.+. ++ .|++||+.+++.. .+..++.
T Consensus 159 ~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~------------- 223 (415)
T 2hqs_A 159 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPR------------- 223 (415)
T ss_dssp EEEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSS-------------
T ss_pred ceEEEEcCCCCC-CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCC-------------
Confidence 689999998554 4444 4567999999998 5677654 33 7999999998764 4444432
Q ss_pred ccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCC
Q 004255 246 GYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 323 (765)
Q Consensus 246 ~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~ 323 (765)
....++++| ++||+....
T Consensus 224 ~~~~~~~spdg~~la~~~~~------------------------------------------------------------ 243 (415)
T 2hqs_A 224 HNGAPAFSPDGSKLAFALSK------------------------------------------------------------ 243 (415)
T ss_dssp CEEEEEECTTSSEEEEEECT------------------------------------------------------------
T ss_pred cccCEEEcCCCCEEEEEEec------------------------------------------------------------
Confidence 123456666 455544310
Q ss_pred CCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCC
Q 004255 324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMP 401 (765)
Q Consensus 324 ~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt--~IrVWdi~~ 401 (765)
+.+..|.+||+.+++. ..+..|...+.+++|+|||++|++++.++. .|.+||+..
T Consensus 244 ----------------------~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~ 300 (415)
T 2hqs_A 244 ----------------------TGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING 300 (415)
T ss_dssp ----------------------TSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred ----------------------CCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence 1134699999998876 678889999999999999999999887443 466678743
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC---CcEEEEeCCC
Q 004255 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSP 462 (765)
Q Consensus 402 ~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d---gTVhIwdl~~ 462 (765)
+ .+..+.. +...+.+++|||||++|++++.+ .+|++||+..
T Consensus 301 -------~-----------~~~~l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 301 -------G-----------APQRITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp -------S-----------CCEECCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred -------C-----------CEEEEec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence 2 1122221 22458899999999999998875 5899999875
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.58 E-value=3.7e-13 Score=140.75 Aligned_cols=278 Identities=12% Similarity=0.075 Sum_probs=154.8
Q ss_pred eEEEEEecC-cEEEEEccCCCcceEee-eeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 76 QVLLLGYQN-GFQVLDVEDASNFNELV-SKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 76 ~vL~~G~~~-G~qVWdv~~~g~~~ell-s~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
.+++.++.+ .+++||++..++...+. -.+.+.+..+++.|+ ..+|+++..+
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd-------------g~~l~~~~~~-------------- 58 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD-------------KRYLYVGVRP-------------- 58 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT-------------SSEEEEEETT--------------
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCC-------------CCEEEEeecC--------------
Confidence 344444544 59999996555443332 234567888888874 2356553321
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECC--CCe--EEEEEeCCCCEEEEEecC--CeEEEEe--CCeEEEEECCCC---c
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQ--SHC--YEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTL---E 222 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlk--tg~--~v~tL~~~s~V~sV~~s~--~~LaV~~--~~~I~iwD~~t~---~ 222 (765)
.++|++|++. +++ .+..+.....+..+++++ +.|+++. ++.|++||+.++ +
T Consensus 59 ------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~ 120 (343)
T 1ri6_A 59 ------------------EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG 120 (343)
T ss_dssp ------------------TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE
T ss_pred ------------------CCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccc
Confidence 1589999997 665 445666566888899887 5565554 457999999433 3
Q ss_pred eeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEec-CCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehh
Q 004255 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS-NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 299 (765)
Q Consensus 223 ~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas-~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~ 299 (765)
....+..... ...++++| ++|+.+. .+..+ ..|+..+ .+.+....
T Consensus 121 ~~~~~~~~~~--------------~~~~~~s~dg~~l~~~~~~~~~v-----~~~d~~~-----------~~~~~~~~-- 168 (343)
T 1ri6_A 121 VVDVVEGLDG--------------CHSANISPDNRTLWVPALKQDRI-----CLFTVSD-----------DGHLVAQD-- 168 (343)
T ss_dssp EEEEECCCTT--------------BCCCEECTTSSEEEEEEGGGTEE-----EEEEECT-----------TSCEEEEE--
T ss_pred ccccccCCCC--------------ceEEEECCCCCEEEEecCCCCEE-----EEEEecC-----------CCceeeec--
Confidence 3333322221 23467887 5666554 21100 0111100 00000000
Q ss_pred hhhhhhhcccceeecccccccCCCC-CCCCccCCCccccccccccccCCCCeEEEEECCC--CcE--EEEec---c-C--
Q 004255 300 EHSKQFAAGLSKTLSKYCQELLPDG-SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT--RAI--ISQFK---A-H-- 368 (765)
Q Consensus 300 d~~k~la~G~~ktls~~~~~~~p~~-s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s--~~~--i~~~~---a-H-- 368 (765)
. ..+ ..+.+ ....+.++++++... .....++.|.+||+.. ++. ...+. . |
T Consensus 169 -------~---~~~------~~~~~~~~~~~~~~pdg~~l~---~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~ 229 (343)
T 1ri6_A 169 -------P---AEV------TTVEGAGPRHMVFHPNEQYAY---CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 229 (343)
T ss_dssp -------E---EEE------ECSTTCCEEEEEECTTSSEEE---EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred -------c---ccc------ccCCCCCcceEEECCCCCEEE---EEeCCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence 0 000 00000 111122333333211 2334688999999953 332 22222 1 1
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (765)
Q Consensus 369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las 448 (765)
...+.+++|+|+|++|+.+...+..|++||+... .+ ....+..+..+ ..+.+++|+|||++|++
T Consensus 230 ~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~-----~~--------~~~~~~~~~~~---~~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 230 TRWAADIHITPDGRHLYACDRTASLITVFSVSED-----GS--------VLSKEGFQPTE---TQPRGFNVDHSGKYLIA 293 (343)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-----SC--------CEEEEEEEECS---SSCCCEEECTTSSEEEE
T ss_pred cCCccceEECCCCCEEEEEecCCCEEEEEEEcCC-----CC--------ceEEeeeecCC---CccceEEECCCCCEEEE
Confidence 2356789999999988866644567999998631 01 11233344322 23788999999999988
Q ss_pred Ee-CCCcEEEEeCCCCCC
Q 004255 449 VS-SKGTCHVFVLSPFGG 465 (765)
Q Consensus 449 ~S-~dgTVhIwdl~~~gg 465 (765)
++ .++++.||+++...+
T Consensus 294 ~~~~~~~v~v~~~d~~~g 311 (343)
T 1ri6_A 294 AGQKSHHISVYEIVGEQG 311 (343)
T ss_dssp ECTTTCEEEEEEEETTTT
T ss_pred ecCCCCeEEEEEEcCCCc
Confidence 88 689999998876554
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.56 E-value=9.7e-13 Score=151.54 Aligned_cols=282 Identities=10% Similarity=0.056 Sum_probs=169.6
Q ss_pred CCeEEEEEecC-cEEEEEcc-CCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcC
Q 004255 74 FKQVLLLGYQN-GFQVLDVE-DASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (765)
Q Consensus 74 ~~~vL~~G~~~-G~qVWdv~-~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~ 151 (765)
+++.|+++..+ .+.+||+. .++++...+.. ...++.+++.|.+- | ...+|++...
T Consensus 189 dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~-------~--dg~~l~v~~~------------- 245 (543)
T 1nir_A 189 SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKG-------Y--EDRYTIAGAY------------- 245 (543)
T ss_dssp TSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTT-------C--TTTEEEEEEE-------------
T ss_pred CCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcC-------C--CCCEEEEEEc-------------
Confidence 35556655554 59999993 23555555553 34578899887110 0 1236655221
Q ss_pred CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC------------CCEEEEEecC--CeEEEEe--CCeEEE
Q 004255 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR------------SSVCMVRCSP--RIVAVGL--ATQIYC 215 (765)
Q Consensus 152 ~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~------------s~V~sV~~s~--~~LaV~~--~~~I~i 215 (765)
.+++|.+||..+++++.++..+ ..+.+|.+++ +.++++. +++|.+
T Consensus 246 -------------------~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~v 306 (543)
T 1nir_A 246 -------------------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL 306 (543)
T ss_dssp -------------------ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred -------------------cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEE
Confidence 1368999999999999998752 2688999986 4444443 458999
Q ss_pred EECCCCceeE--EEEecCCcccCCCCccccccccceeEEcc--ceEEEecC--CceecCCccccCCCCCCCCCCCCcCCC
Q 004255 216 FDALTLENKF--SVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (765)
Q Consensus 216 wD~~t~~~l~--tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~--~~~~~~~G~~s~~~lt~~~~s~s~sp~ 289 (765)
||..+++.+. ++..... ...++|+| ++|..+.. +.+ ..|+..+
T Consensus 307 vd~~~~~~l~~~~i~~~~~--------------~~~~~~spdg~~l~va~~~~~~v------~v~D~~t----------- 355 (543)
T 1nir_A 307 VNYKDIDNLTVTSIGAAPF--------------LHDGGWDSSHRYFMTAANNSNKV------AVIDSKD----------- 355 (543)
T ss_dssp EECTTSSSCEEEEEECCSS--------------CCCEEECTTSCEEEEEEGGGTEE------EEEETTT-----------
T ss_pred EEecCCCcceeEEeccCcC--------------ccCceECCCCCEEEEEecCCCeE------EEEECCC-----------
Confidence 9999887655 3322111 13478888 66544322 111 1122111
Q ss_pred CCcceeeehhhhhhhhhcccceeecccccccCC-CCCCCCccCCCcccccccccccc-CCCCeEEEEECCC-------Cc
Q 004255 290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP-DGSSSPVSPNSVWKVGRHAGADM-DNAGIVVVKDFVT-------RA 360 (765)
Q Consensus 290 ~gslva~~a~d~~k~la~G~~ktls~~~~~~~p-~~s~~~~s~s~~~~~~~~~~~~~-~~dG~V~IwDl~s-------~~ 360 (765)
+.+++ ++.-. ..| .+....+ ..+++.. ..+++ ..+++|.|||+.+ .+
T Consensus 356 -g~l~~----------------~i~~g---~~ph~g~g~~~-~~p~~g~---~~~s~~~~d~~V~v~d~~~~~~~~~~~~ 411 (543)
T 1nir_A 356 -RRLSA----------------LVDVG---KTPHPGRGANF-VHPKYGP---VWSTSHLGDGSISLIGTDPKNHPQYAWK 411 (543)
T ss_dssp -TEEEE----------------EEECS---SSBCCTTCEEE-EETTTEE---EEEEEBSSSSEEEEEECCTTTCTTTBTS
T ss_pred -CeEEE----------------eeccC---CCCCCCCCccc-CCCCCcc---EEEeccCCCceEEEEEeCCCCCchhcCe
Confidence 11111 11000 000 0000000 0111111 11223 2578999999998 89
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEc---C---CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-c------
Q 004255 361 IISQFKAHTSPISALCFDPSGTLLVTASV---Y---GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-R------ 427 (765)
Q Consensus 361 ~i~~~~aH~~~IsaLaFSpdG~lLATaS~---d---Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~-r------ 427 (765)
++.++.+|...+..++|+|||++|++++. | +..|.|||+.+. ..+++.. -
T Consensus 412 ~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~-----------------~~~~~~~~v~~~~~~ 474 (543)
T 1nir_A 412 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL-----------------DAKYQVLPIAEWADL 474 (543)
T ss_dssp EEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT-----------------TSCCEEECHHHHHCC
T ss_pred EEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC-----------------CCCeEEeechhhccc
Confidence 99999999999999999999999999872 1 335999999762 1222221 0
Q ss_pred ccccccEEEEEEccCCCEEEEEe-----CCCcEEEEeCCCCCCCccc
Q 004255 428 GITSATIQDICFSHYSQWIAIVS-----SKGTCHVFVLSPFGGDSGF 469 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S-----~dgTVhIwdl~~~gg~~~~ 469 (765)
+.....+..+.|+|||++|.++. .+++|.|||..+......+
T Consensus 475 ~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i 521 (543)
T 1nir_A 475 GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV 521 (543)
T ss_dssp CSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred CCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEee
Confidence 11134689999999999998773 4799999999886544333
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.55 E-value=9.6e-12 Score=131.00 Aligned_cols=172 Identities=12% Similarity=0.083 Sum_probs=122.3
Q ss_pred CEEEEEECCCCeEEEEEeCCC----------CEEEEEecC--CeEEEEe---CCeEEEEECCCCceeEEEEecCCcccCC
Q 004255 173 TAVRFYSFQSHCYEHVLRFRS----------SVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAG 237 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s----------~V~sV~~s~--~~LaV~~---~~~I~iwD~~t~~~l~tl~t~p~p~~~~ 237 (765)
++|.+||+++++.+..+..+. .+..+.+++ +.|+++. ++.|++||+.+++....+.....
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----- 185 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK----- 185 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT-----
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC-----
Confidence 589999999999999998743 268888876 5666654 45799999999987766542111
Q ss_pred CCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecc
Q 004255 238 QGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSK 315 (765)
Q Consensus 238 ~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~ 315 (765)
....++++| ++|+
T Consensus 186 --------~~~~~~~s~dg~~l~--------------------------------------------------------- 200 (353)
T 3vgz_A 186 --------MSTGLALDSEGKRLY--------------------------------------------------------- 200 (353)
T ss_dssp --------TCCCCEEETTTTEEE---------------------------------------------------------
T ss_pred --------ccceEEECCCCCEEE---------------------------------------------------------
Confidence 001233322 1111
Q ss_pred cccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc----CCCCeEEEEECCCCCEEEEEEcCC
Q 004255 316 YCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA----HTSPISALCFDPSGTLLVTASVYG 391 (765)
Q Consensus 316 ~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a----H~~~IsaLaFSpdG~lLATaS~dG 391 (765)
.+..++.|.+||+.+++.+..+.. +...+..++|+|+|++|+.++.++
T Consensus 201 ----------------------------~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 252 (353)
T 3vgz_A 201 ----------------------------TTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA 252 (353)
T ss_dssp ----------------------------EECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS
T ss_pred ----------------------------EEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC
Confidence 112367899999999998887764 566788999999999988888766
Q ss_pred CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCC
Q 004255 392 NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF 463 (765)
Q Consensus 392 t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~ 463 (765)
..|.+||+.. + ..+..+.-+. -.+++|+|||++|++++ .+++|++||+...
T Consensus 253 ~~v~~~d~~~-------~----------~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 253 AEVLVVDTRN-------G----------NILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp SEEEEEETTT-------C----------CEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred CEEEEEECCC-------C----------cEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 7899999854 3 3444444332 24699999999776666 6899999998753
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.53 E-value=4.3e-13 Score=136.07 Aligned_cols=218 Identities=9% Similarity=0.025 Sum_probs=139.6
Q ss_pred CCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeCCeEEEEECCC-CceeEEEEecCCcccCCCCccccccccc
Q 004255 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINVGYG 248 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t-~~~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (765)
+++|++||+.+++....+.+...|.++++++ ++|+++.++.|++||+.+ ++.......+... ...
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------------~~~ 88 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATI------------CNN 88 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCC------------BCS
T ss_pred ceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccc------------ccc
Confidence 5799999999999887777888999999997 688888888999999998 7654433222110 124
Q ss_pred eeEEcc--ceEEEecCC----ceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCC
Q 004255 249 PMAVGP--RWLAYASNT----LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 322 (765)
Q Consensus 249 ~~Alsp--r~LAyas~~----~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p 322 (765)
.++++| ++|+++... ..+. .++.. .+..+.+..
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~-----~~~~~-----------------------------~~~~~~~~~------- 127 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIY-----LLPST-----------------------------GGTPRLMTK------- 127 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEE-----EEETT-----------------------------CCCCEECCS-------
T ss_pred ceEECCCCCEEEEEEeCCCCcceEE-----EEECC-----------------------------CCceEEeec-------
Confidence 578888 788887632 1110 00000 000000000
Q ss_pred CCCCCCccCCCccccccccccccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255 323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (765)
Q Consensus 323 ~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s-~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~ 401 (765)
........++++++... ..+..++.++||++.. ......+..|...+.+++|+|+|++|+.++..+..++||++..
T Consensus 128 ~~~~~~~~~spdg~~l~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~ 204 (297)
T 2ojh_A 128 NLPSYWHGWSPDGKSFT---YCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV 204 (297)
T ss_dssp SSSEEEEEECTTSSEEE---EEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred CCCccceEECCCCCEEE---EEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECC
Confidence 00001112223332211 1344678889998532 2345677788899999999999999888775344589999853
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC-----------CcEEEEeCCCC
Q 004255 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-----------GTCHVFVLSPF 463 (765)
Q Consensus 402 ~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d-----------gTVhIwdl~~~ 463 (765)
. + ..+..+.. +...+.+++|+|||++|++++.+ +.+.+||+...
T Consensus 205 ~------~----------~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 205 D------G----------SSVERITD--SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp T------S----------SCEEECCC--CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred C------C----------CCcEEEec--CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 1 1 13334432 22468899999999999999876 56999998753
No 136
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.51 E-value=1.1e-11 Score=130.10 Aligned_cols=88 Identities=10% Similarity=0.052 Sum_probs=65.7
Q ss_pred EEECCCCcE-EEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 004255 353 VKDFVTRAI-ISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT 430 (765)
Q Consensus 353 IwDl~s~~~-i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~ 430 (765)
.+|+.+++. +..+..+...+..++|+| ||++|+++ ++ .|.+||+.. + ..+..+..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~-~v~~~d~~~-------~----------~~~~~~~~~-- 294 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LN-RLAKYDLKQ-------R----------KLIKAANLD-- 294 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ES-EEEEEETTT-------T----------EEEEEEECS--
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cC-eEEEEECcc-------C----------eEEEEEcCC--
Confidence 367766653 223345667889999999 99999988 34 699999864 3 344444433
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 431 SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 431 ~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
..+.+++|+|||++|++++.+++|++||+...
T Consensus 295 -~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 295 -HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp -SCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred -CCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 23678999999999999999999999999764
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.49 E-value=5.9e-13 Score=156.38 Aligned_cols=282 Identities=9% Similarity=-0.020 Sum_probs=164.5
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEec-Cc------EEEEEccCCCcceEeeeeccCC---------------------
Q 004255 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQ-NG------FQVLDVEDASNFNELVSKRDGP--------------------- 107 (765)
Q Consensus 56 ~~~v~w~~fd~l~~~~~~~~~vL~~G~~-~G------~qVWdv~~~g~~~ells~~dg~--------------------- 107 (765)
.+.+..+.|.. +++.|+.+.. +| +.+||++ .++...++..+...
T Consensus 36 ~~~~~~~~~Sp-------dG~~la~~~~~d~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 36 GPTLMKPKVAP-------DGSRVTFLRGKDSDRNQLDLWSYDIG-SGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp CCCCEEEEECT-------TSSEEEEEECCSSCTTEEEEEEEETT-TCCEEEEECGGGTC--------------------C
T ss_pred CCCCCCceEec-------CCCEEEEEeccCCCCcccEEEEEECC-CCceeEccchhhcccccccccchhhhhhhhhhhcc
Confidence 44566677744 3556666554 43 9999995 57777777655432
Q ss_pred ---EEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC-
Q 004255 108 ---VSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH- 183 (765)
Q Consensus 108 ---V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg- 183 (765)
|..++++|+ ...|+++. .++|.+||+.++
T Consensus 108 ~~~v~~~~~SpD-------------g~~l~~~~----------------------------------~~~i~~~d~~~~~ 140 (741)
T 2ecf_A 108 MTGIVDYQWSPD-------------AQRLLFPL----------------------------------GGELYLYDLKQEG 140 (741)
T ss_dssp CEESCCCEECTT-------------SSEEEEEE----------------------------------TTEEEEEESSSCS
T ss_pred ccCcceeEECCC-------------CCEEEEEe----------------------------------CCcEEEEECCCCC
Confidence 566666664 23565532 148999999988
Q ss_pred --eEEEEEeCCCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcc-----ccccccceeEEcc
Q 004255 184 --CYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAV-----GINVGYGPMAVGP 254 (765)
Q Consensus 184 --~~v~tL~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~-----~~~~~~~~~Alsp 254 (765)
+..........+..++++| +.||.+.+++|++||+.+++............. .+.. ........++++|
T Consensus 141 ~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~--~g~~~~v~~~~~~~~~~~~~Sp 218 (741)
T 2ecf_A 141 KAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIG--NGIAEFVADEEMDRHTGYWWAP 218 (741)
T ss_dssp TTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEE--ESCCCHHHHHHSCCCCSEEECT
T ss_pred cceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCcccee--ccccceeeeeccccccceEECC
Confidence 5443333446899999998 688888888999999998865432221111000 0000 0000024578888
Q ss_pred --ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCC
Q 004255 255 --RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPN 332 (765)
Q Consensus 255 --r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s 332 (765)
++||++..+.- ....+. .. ...|... ....+ .++..
T Consensus 219 Dg~~l~~~~~d~~----~~~~~~--~~-----~~~p~~~--------------------~~~~~---~~~~~-------- 256 (741)
T 2ecf_A 219 DDSAIAYARIDES----PVPVQK--RY-----EVYADRT--------------------DVIEQ---RYPAA-------- 256 (741)
T ss_dssp TSSCEEEEEEECT----TSCEEE--EE-----EECSSCE--------------------EEEEE---ECCBT--------
T ss_pred CCCEEEEEEEcCC----CCceEe--cC-----CCCCCcc--------------------cceEe---ecCCC--------
Confidence 88888753210 000000 00 0000000 00000 00000
Q ss_pred CccccccccccccCCCCeEEEEECCC-CcEEEEec--cCCCCeEEEEECCCCCEEEEEEc----CCCEEEEEeCCCCccc
Q 004255 333 SVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFK--AHTSPISALCFDPSGTLLVTASV----YGNNINIFRIMPSCMR 405 (765)
Q Consensus 333 ~~~~~~~~~~~~~~~dG~V~IwDl~s-~~~i~~~~--aH~~~IsaLaFSpdG~lLATaS~----dGt~IrVWdi~~~~~~ 405 (765)
......-.|.+||+.+ ++...... .|...+..++| |||++|+.++. ++..|++||+..
T Consensus 257 ----------g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~---- 321 (741)
T 2ecf_A 257 ----------GDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS---- 321 (741)
T ss_dssp ----------TSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT----
T ss_pred ----------CCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC----
Confidence 0001123688889988 87655443 48889999999 99999998764 234689999854
Q ss_pred CCCCCCccccCCcceEEEEEecccccc---cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 406 SGSGNHKYDWNSSHVHLYKLHRGITSA---TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 406 ~~sG~~~~~~~~s~~~l~~l~rG~~~a---~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
| .....+. +.... .+.+++|||||++|++++.||+++||.++..++
T Consensus 322 ---g----------~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~ 370 (741)
T 2ecf_A 322 ---N----------QQRVLAH-ETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK 370 (741)
T ss_dssp ---C----------CEEEEEE-EECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC
T ss_pred ---C----------ceEEEEE-cCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC
Confidence 3 1222222 21211 346799999999999999999999999875544
No 138
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.49 E-value=1.3e-11 Score=130.93 Aligned_cols=105 Identities=11% Similarity=0.211 Sum_probs=69.5
Q ss_pred CCeEEEEECCC--CcE--EEEeccCC------CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 004255 348 AGIVVVKDFVT--RAI--ISQFKAHT------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (765)
Q Consensus 348 dG~V~IwDl~s--~~~--i~~~~aH~------~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~ 417 (765)
++.|.+||+.. ++. +..+..+. ..+..++|+|||++|+.++..+..|.|||+... |
T Consensus 208 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~------g-------- 273 (347)
T 3hfq_A 208 SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD------G-------- 273 (347)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG------G--------
T ss_pred CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC------C--------
Confidence 45777777663 432 23333322 348899999999988655554567999998531 1
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCC-CcEEEEeCCCCCCCcc
Q 004255 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGGDSG 468 (765)
Q Consensus 418 s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d-gTVhIwdl~~~gg~~~ 468 (765)
....+..+..+ ...+.+++|+|||++|++++.+ ++|.||+++...+...
T Consensus 274 ~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 274 HLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp CEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred cEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 11334444321 2347899999999999888765 8999999887666543
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.47 E-value=1.7e-12 Score=151.78 Aligned_cols=220 Identities=13% Similarity=0.088 Sum_probs=134.1
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeCCeEEEEECCC-----CceeEEEEecCCccc-----CCCCc
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALT-----LENKFSVLTYPVPQL-----AGQGA 240 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t-----~~~l~tl~t~p~p~~-----~~~~~ 240 (765)
++|++||+.+++..........+.+++++| +.||.+.++.|++||+.+ ++............. .++..
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~ 180 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREF 180 (706)
T ss_dssp TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCT
T ss_pred CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhc
Confidence 489999999998877766777888889987 688888888999999998 765432221111000 00000
Q ss_pred cccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeeccccc
Q 004255 241 VGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 318 (765)
Q Consensus 241 ~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~ 318 (765)
. ....++++| ++||++..+. .+...+..... . .. ...+ .. .+|
T Consensus 181 ~----~~~~~~~SpDg~~la~~~~d~----~~~~~~~~~~~---~----~~-~~~~----------------~~-~~y-- 225 (706)
T 2z3z_A 181 G----IEKGTFWSPKGSCLAFYRMDQ----SMVKPTPIVDY---H----PL-EAES----------------KP-LYY-- 225 (706)
T ss_dssp T----CCCSEEECTTSSEEEEEEEEC----TTSCCEEEEEC---C----SS-SCEE----------------EE-ECC--
T ss_pred C----CCceEEECCCCCEEEEEEECC----CCCceEEeecc---C----CC-CCce----------------EE-eeC--
Confidence 0 024578888 8898876321 00000000000 0 00 0000 00 000
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEcCC----C
Q 004255 319 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYG----N 392 (765)
Q Consensus 319 ~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~--aH~~~IsaLaFSpdG~lLATaS~dG----t 392 (765)
|. ......++.|.+||+.+++...... .|...+.+++|+|||++|++++.++ .
T Consensus 226 ---~~------------------~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 284 (706)
T 2z3z_A 226 ---PM------------------AGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNEC 284 (706)
T ss_dssp ---CB------------------TTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEE
T ss_pred ---CC------------------CCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCee
Confidence 00 0012245689999999988655442 5778899999999999999988754 2
Q ss_pred EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc---cEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA---TIQDICFSH--YSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 393 ~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a---~I~slaFSp--Dg~~Las~S~dgTVhIwdl~~~gg 465 (765)
.|++||+.+ | ..+..+....... .+.+++||| ||++|++++.|++++||.++..++
T Consensus 285 ~v~~~d~~~-------g----------~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~ 345 (706)
T 2z3z_A 285 KVNAYDAET-------G----------RFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR 345 (706)
T ss_dssp EEEEEETTT-------C----------CEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC
T ss_pred EEEEEECCC-------C----------ceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC
Confidence 699999854 2 1222222111111 246789999 999999999999999999874444
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.46 E-value=1.1e-12 Score=153.40 Aligned_cols=279 Identities=13% Similarity=0.025 Sum_probs=160.9
Q ss_pred CCeEEEEEecCcEEEEEccCCCcceEeeeeccC---CEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCc
Q 004255 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDG---PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR 150 (765)
Q Consensus 74 ~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg---~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~ 150 (765)
++++|+.+.++.+++||++ ++++..++..+.. .|..++++|+. ..||++..+..
T Consensus 27 dg~~~~~~~dg~i~~~d~~-~g~~~~~~~~~~~~~~~v~~~~~SpDg-------------~~l~~~~~~~~--------- 83 (723)
T 1xfd_A 27 DTEFIYREQKGTVRLWNVE-TNTSTVLIEGKKIESLRAIRYEISPDR-------------EYALFSYNVEP--------- 83 (723)
T ss_dssp SSCBCCCCSSSCEEEBCGG-GCCCEEEECTTTTTTTTCSEEEECTTS-------------SEEEEEESCCC---------
T ss_pred CCcEEEEeCCCCEEEEECC-CCcEEEEeccccccccccceEEECCCC-------------CEEEEEecCcc---------
Confidence 3455655444569999995 5777788877665 48999999862 26666443221
Q ss_pred CCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC----CCEEEEEecC--CeEEEEeCCeEEEEECCCCcee
Q 004255 151 SHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR----SSVCMVRCSP--RIVAVGLATQIYCFDALTLENK 224 (765)
Q Consensus 151 ~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~----s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l 224 (765)
.+. ....+.|.+||+.+++. ..+... ..|..++++| +.||.+..++|++||+.+++..
T Consensus 84 ---------~~~------~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~ 147 (723)
T 1xfd_A 84 ---------IYQ------HSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAI 147 (723)
T ss_dssp ---------CSS------SCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCE
T ss_pred ---------cee------ecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceE
Confidence 000 01247899999999986 344322 2378889987 6888888889999999998765
Q ss_pred EEEEecCCcccCCCCccc------cccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceee
Q 004255 225 FSVLTYPVPQLAGQGAVG------INVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVAR 296 (765)
Q Consensus 225 ~tl~t~p~p~~~~~~~~~------~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~ 296 (765)
.....+.... +-.+.+. +......++++| ++|||+..+.- ....++....
T Consensus 148 ~~~~~~~~~~-~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~----~~~~~~~~~~----------------- 205 (723)
T 1xfd_A 148 RVVSTGKEGV-IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS----RVPIMELPTY----------------- 205 (723)
T ss_dssp EEECCCBTTT-EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT----TSCEEEECCC-----------------
T ss_pred EEecCCCCCc-eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCC----ccceEEeecc-----------------
Confidence 5443322110 0000000 000124588998 88999764310 0000000000
Q ss_pred ehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC------CC
Q 004255 297 YAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH------TS 370 (765)
Q Consensus 297 ~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH------~~ 370 (765)
.....+. .....+...+ ....+..|.+||+.+++....+..| ..
T Consensus 206 --------------------~~~~~~~--~~~~~~~~~G--------~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 206 --------------------TGSIYPT--VKPYHYPKAG--------SENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp --------------------SSSSSCC--CEEEECCBTT--------SCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred --------------------CCcCCCc--ceeccCCCCC--------CCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 0000000 0000000000 0122458999999998866677665 67
Q ss_pred CeEEEEECCCCCEEEEEEcCC---CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccE----EEEEEccCC
Q 004255 371 PISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATI----QDICFSHYS 443 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dG---t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I----~slaFSpDg 443 (765)
.+..++|||||++|++.+..+ ..|++||+.. | .....+. +.+...+ .+++|||||
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-------g----------~~~~~~~-~~~~~~~~~~~~~~~~spdg 317 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-------G----------VCTKKHE-DESEAWLHRQNEEPVFSKDG 317 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-------C----------CEEEEEE-EECSSCCCCCCCCCEECTTS
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-------C----------cceEEEE-eccCCEEeccCCCceEcCCC
Confidence 899999999999998876532 4689999854 3 1222221 1122223 378999999
Q ss_pred CEEEE--EeCCC----cEEEEeCC
Q 004255 444 QWIAI--VSSKG----TCHVFVLS 461 (765)
Q Consensus 444 ~~Las--~S~dg----TVhIwdl~ 461 (765)
++|+. +..++ +.+||.++
T Consensus 318 ~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 318 RKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp CSEEEEEEECCSSSSCEEEEEEEC
T ss_pred CeEEEEEecccCCCcceeEEEEEe
Confidence 98875 44667 66666555
No 141
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.44 E-value=2.8e-11 Score=129.41 Aligned_cols=106 Identities=11% Similarity=0.252 Sum_probs=74.6
Q ss_pred CCCeEEEEECCCCcE--EEEe---ccCCCCeEEEEECCCCCEEEEEEcC-CCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255 347 NAGIVVVKDFVTRAI--ISQF---KAHTSPISALCFDPSGTLLVTASVY-GNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~--i~~~---~aH~~~IsaLaFSpdG~lLATaS~d-Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~ 420 (765)
.++.|.+||+.+++. +..+ ..|......++|+|||++|+.+..+ +..|+||++.+. .| ...
T Consensus 231 ~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-----~g--------~~~ 297 (361)
T 3scy_A 231 IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-----NG--------TLT 297 (361)
T ss_dssp TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-----TC--------CEE
T ss_pred CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-----CC--------cEE
Confidence 357899999887653 3333 3344557899999999999887775 567999998531 02 112
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCcc
Q 004255 421 HLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGDSG 468 (765)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~gg~~~ 468 (765)
.+..+..| ..+.+++|||||++|++++ .+++|.||+++...+...
T Consensus 298 ~~~~~~~g---~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 298 KVGYQLTG---IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp EEEEEECS---SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EeeEecCC---CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 33344322 3477899999999999888 679999999887665543
No 142
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.42 E-value=1.3e-10 Score=122.27 Aligned_cols=218 Identities=7% Similarity=-0.009 Sum_probs=143.5
Q ss_pred eEEEEEecC-cEEEEEccCCCcceEeeeeccCC---------EEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCC
Q 004255 76 QVLLLGYQN-GFQVLDVEDASNFNELVSKRDGP---------VSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLA 145 (765)
Q Consensus 76 ~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~---------V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~ 145 (765)
.+++++..+ .+.+||.+ .+++...+..+.+. +..+.+.|+. ..|++...+
T Consensus 102 ~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-------------~~l~~~~~~------ 161 (353)
T 3vgz_A 102 TLWFGNTVNSAVTAIDAK-TGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT-------------NTVYISGIG------ 161 (353)
T ss_dssp EEEEEETTTTEEEEEETT-TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT-------------TEEEEEEES------
T ss_pred EEEEEecCCCEEEEEeCC-CCeeEEEEecCCCccccccCCCCCceEEECCCC-------------CEEEEEecC------
Confidence 466666654 49999995 56666666554432 6778888641 244443211
Q ss_pred CCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecC--CeEEEEe-CCeEEEEECCCC
Q 004255 146 PGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTL 221 (765)
Q Consensus 146 ~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~ 221 (765)
.+++|.+||+++++.+..+.. ...+..+.+++ +.|+++. ++.|++||+.++
T Consensus 162 -------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~ 216 (353)
T 3vgz_A 162 -------------------------KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN 216 (353)
T ss_dssp -------------------------SSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT
T ss_pred -------------------------CCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 135899999999999999984 44577788876 6666654 468999999999
Q ss_pred ceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehh
Q 004255 222 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 299 (765)
Q Consensus 222 ~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~ 299 (765)
+....+...... .......++++| ++|..
T Consensus 217 ~~~~~~~~~~~~---------~~~~~~~~~~s~dg~~l~~---------------------------------------- 247 (353)
T 3vgz_A 217 KILSRKKLLDDG---------KEHFFINISLDTARQRAFI---------------------------------------- 247 (353)
T ss_dssp EEEEEEECCCSS---------SCCCEEEEEEETTTTEEEE----------------------------------------
T ss_pred eEEEEEEcCCCC---------CCcccceEEECCCCCEEEE----------------------------------------
Confidence 877776542110 000011133322 11111
Q ss_pred hhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC
Q 004255 300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP 379 (765)
Q Consensus 300 d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp 379 (765)
....++.|.+||+.+++.+..+..+. + ..++|+|
T Consensus 248 --------------------------------------------~~~~~~~v~~~d~~~~~~~~~~~~~~-~-~~~~~s~ 281 (353)
T 3vgz_A 248 --------------------------------------------TDSKAAEVLVVDTRNGNILAKVAAPE-S-LAVLFNP 281 (353)
T ss_dssp --------------------------------------------EESSSSEEEEEETTTCCEEEEEECSS-C-CCEEEET
T ss_pred --------------------------------------------EeCCCCEEEEEECCCCcEEEEEEcCC-C-ceEEECC
Confidence 11235789999999999888887654 2 5699999
Q ss_pred CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 004255 380 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453 (765)
Q Consensus 380 dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dg 453 (765)
+|++|+.++..+..|.+||+.+ + ..+..+..+ ..+.+++|+|||++|+++..++
T Consensus 282 dg~~l~v~~~~~~~v~~~d~~~-------~----------~~~~~~~~~---~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 282 ARNEAYVTHRQAGKVSVIDAKS-------Y----------KVVKTFDTP---THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp TTTEEEEEETTTTEEEEEETTT-------T----------EEEEEEECC---SEEEEEEECTTSCEEEEEEECC
T ss_pred CCCEEEEEECCCCeEEEEECCC-------C----------eEEEEEecC---CCCCeEEEcCCCCEEEEEEccc
Confidence 9997777775566799999854 3 344445432 3579999999999888877664
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.40 E-value=1.5e-11 Score=124.58 Aligned_cols=222 Identities=12% Similarity=0.056 Sum_probs=140.6
Q ss_pred CCeEEEEEecCcEEEEEccCCCcceEeeeecc-CCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRD-GPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (765)
Q Consensus 74 ~~~vL~~G~~~G~qVWdv~~~g~~~ells~~d-g~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~ 152 (765)
+++.|+++.++.+.+||++..++...+...+. ..|..+++.|+ ..+|+++..+..
T Consensus 52 dg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd-------------g~~l~~~~~~~~----------- 107 (297)
T 2ojh_A 52 DGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD-------------GALYAISDKVEF----------- 107 (297)
T ss_dssp TSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT-------------SSEEEEEECTTT-----------
T ss_pred CCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCC-------------CCEEEEEEeCCC-----------
Confidence 46788888888899999954266666665553 67888888874 236665432110
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEE-EE-eCCeEEEEE--CCCCceeEE
Q 004255 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVA-VG-LATQIYCFD--ALTLENKFS 226 (765)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~La-V~-~~~~I~iwD--~~t~~~l~t 226 (765)
....|.+|++.+++ ...+.....+..+++++ +.|+ ++ .++.++||+ +.+++. ..
T Consensus 108 ------------------~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~ 167 (297)
T 2ojh_A 108 ------------------GKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TR 167 (297)
T ss_dssp ------------------SSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EE
T ss_pred ------------------CcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eE
Confidence 02467777777766 45555556788899987 5555 33 456677777 444432 22
Q ss_pred EEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhh
Q 004255 227 VLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ 304 (765)
Q Consensus 227 l~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~ 304 (765)
+..+.. ....++++| ++|+++.
T Consensus 168 ~~~~~~-------------~~~~~~~s~dg~~l~~~~------------------------------------------- 191 (297)
T 2ojh_A 168 LTHGEG-------------RNDGPDYSPDGRWIYFNS------------------------------------------- 191 (297)
T ss_dssp CCCSSS-------------CEEEEEECTTSSEEEEEE-------------------------------------------
T ss_pred cccCCC-------------ccccceECCCCCEEEEEe-------------------------------------------
Confidence 222211 012334433 2222221
Q ss_pred hhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCE
Q 004255 305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTL 383 (765)
Q Consensus 305 la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~-s~~~i~~~~aH~~~IsaLaFSpdG~l 383 (765)
..++.++||++. .+..+..+..|...+.+++|+|+|++
T Consensus 192 -----------------------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 230 (297)
T 2ojh_A 192 -----------------------------------------SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDK 230 (297)
T ss_dssp -----------------------------------------CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSE
T ss_pred -----------------------------------------cCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCE
Confidence 124566777765 45566778888889999999999999
Q ss_pred EEEEEcCC----------CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 004255 384 LVTASVYG----------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453 (765)
Q Consensus 384 LATaS~dG----------t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dg 453 (765)
|++++.++ ..|.+||+.. + ....+..+.. +...|.+++|+|||++|++++.+.
T Consensus 231 l~~~~~~~~~~~~~~~~~~~l~~~d~~~-------~--------~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 231 VVFVSYDADVFDHPRDLDVRVQLMDMDG-------G--------NVETLFDLFG--GQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEETTCCSCCSSEEEEEEEEETTS-------C--------SCEEEEEEEE--STTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEEcCCCCCcccccCceEEEEEecCC-------C--------CceeeeccCC--CCcccccceECCCCCEEEEEEecc
Confidence 99988753 4599999854 2 1134444432 234588899999999999888764
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.39 E-value=1.8e-11 Score=143.82 Aligned_cols=99 Identities=13% Similarity=0.193 Sum_probs=72.1
Q ss_pred CCCeEEEEECCCCcEEEEeccCCC----CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 347 NAGIVVVKDFVTRAIISQFKAHTS----PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~aH~~----~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
.++.|.+||+.+++....+..|.. .+..++|+|||++|++++.+|. ++||.+... + . +
T Consensus 310 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~~~~------~----------~-~ 371 (741)
T 2ecf_A 310 KKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGF-QHLYRIDSK------G----------K-A 371 (741)
T ss_dssp SEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSS-CEEEEECSS------S----------C-E
T ss_pred CeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCc-cEEEEEcCC------C----------C-e
Confidence 456899999999998877776654 4568999999999999888665 788876421 2 2 3
Q ss_pred EEEecccccccEEEE-EEccCCCEEEEEe-CCC--cEEEEeCCCCCC
Q 004255 423 YKLHRGITSATIQDI-CFSHYSQWIAIVS-SKG--TCHVFVLSPFGG 465 (765)
Q Consensus 423 ~~l~rG~~~a~I~sl-aFSpDg~~Las~S-~dg--TVhIwdl~~~gg 465 (765)
..+..+ ...|.++ +|||||++|+..+ .++ +++||+++..++
T Consensus 372 ~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 372 AALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp EESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred eeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 344332 2457777 5999999886554 455 899999976444
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.39 E-value=1.8e-10 Score=120.83 Aligned_cols=180 Identities=10% Similarity=0.119 Sum_probs=119.7
Q ss_pred CEEEEEECCCCeEEEEEeCCC-CEEEEEecC--CeEEEEe--CCeEEEEECCCCce-eEEEEecCCcccCCCCccccccc
Q 004255 173 TAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAVGL--ATQIYCFDALTLEN-KFSVLTYPVPQLAGQGAVGINVG 246 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s-~V~sV~~s~--~~LaV~~--~~~I~iwD~~t~~~-l~tl~t~p~p~~~~~~~~~~~~~ 246 (765)
++|++||+.+++.+..+.+.. .+ .+++++ +.|+++. +++|++||+.+++. ...+..+..|
T Consensus 20 ~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------------- 85 (331)
T 3u4y_A 20 RRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS------------- 85 (331)
T ss_dssp TEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC-------------
T ss_pred CeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCC-------------
Confidence 689999999999999988754 55 899987 5555543 45899999999887 5555443332
Q ss_pred cceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCC
Q 004255 247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (765)
Q Consensus 247 ~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~ 324 (765)
...++++| ++|+ ...
T Consensus 86 ~~~~~~s~dg~~l~-~~~-------------------------------------------------------------- 102 (331)
T 3u4y_A 86 MADVDITPDDQFAV-TVT-------------------------------------------------------------- 102 (331)
T ss_dssp CCCEEECTTSSEEE-ECC--------------------------------------------------------------
T ss_pred ccceEECCCCCEEE-Eec--------------------------------------------------------------
Confidence 11144443 2222 110
Q ss_pred CCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCE-EEEEeCCCCc
Q 004255 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN-INIFRIMPSC 403 (765)
Q Consensus 325 s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~-IrVWdi~~~~ 403 (765)
.....+.|.+||+.+++.+..+..+.. ..+++|+|||++|++++.++.. |.+|++...
T Consensus 103 -------------------~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~- 161 (331)
T 3u4y_A 103 -------------------GLNHPFNMQSYSFLKNKFISTIPIPYD-AVGIAISPNGNGLILIDRSSANTVRRFKIDAD- 161 (331)
T ss_dssp -------------------CSSSSCEEEEEETTTTEEEEEEECCTT-EEEEEECTTSSCEEEEEETTTTEEEEEEECTT-
T ss_pred -------------------CCCCcccEEEEECCCCCeEEEEECCCC-ccceEECCCCCEEEEEecCCCceEEEEEECCC-
Confidence 001223899999999998888876544 5899999999877666655456 999998542
Q ss_pred ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCC
Q 004255 404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG 464 (765)
Q Consensus 404 ~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~g 464 (765)
|.. . ......+.. .....+++|+|||++|++++ .+++|++||+....
T Consensus 162 -----g~~-~-----~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 209 (331)
T 3u4y_A 162 -----GVL-F-----DTGQEFISG---GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE 209 (331)
T ss_dssp -----CCE-E-----EEEEEEECS---SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred -----CcE-e-----ecCCccccC---CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 200 0 000111211 23478999999999765555 68999999987543
No 146
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.38 E-value=1.7e-11 Score=137.02 Aligned_cols=103 Identities=12% Similarity=0.148 Sum_probs=78.2
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
.+..||+|+|||+.++..+....+|...|.+++|+|+|++||+|+.||+ |+|||++. ....
T Consensus 167 s~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~~------------------~~~~ 227 (434)
T 2oit_A 167 VCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPTL------------------QEKK 227 (434)
T ss_dssp EEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSC-EEEECTTC------------------CEEE
T ss_pred EEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccCC------------------cccc
Confidence 4567899999999999877777889999999999999999999999775 99999841 1222
Q ss_pred EEecc-----cccccEEEEEEccCCCEEEEEe-CCCc------EEEEeCCCCCC
Q 004255 424 KLHRG-----ITSATIQDICFSHYSQWIAIVS-SKGT------CHVFVLSPFGG 465 (765)
Q Consensus 424 ~l~rG-----~~~a~I~slaFSpDg~~Las~S-~dgT------VhIwdl~~~gg 465 (765)
.+... .+...|.+++|++++.++++.+ .+|. +++|++...+.
T Consensus 228 ~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~ 281 (434)
T 2oit_A 228 VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEE 281 (434)
T ss_dssp EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTT
T ss_pred cccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCC
Confidence 22211 1123699999999998886543 4433 89999986544
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.35 E-value=1.2e-11 Score=141.79 Aligned_cols=91 Identities=9% Similarity=0.093 Sum_probs=70.2
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG-t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
+.|.+||+.+++.. .+..|...+..++|||||++||+++.+| ..|.+||+.. | ... .+ .
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-------~----------~~~-~~-~ 234 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD-------G----------SVE-DL-E 234 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-------C----------CEE-EC-C
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC-------C----------cEE-Ec-c
Confidence 46999999988754 6788999999999999999999777655 2699999854 3 222 22 2
Q ss_pred ccccccEEEEE--------EccCCCEEEEEeCCCcEEEEeC
Q 004255 428 GITSATIQDIC--------FSHYSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 428 G~~~a~I~sla--------FSpDg~~Las~S~dgTVhIwdl 460 (765)
++. ..+.+++ |||||+.+++++.|++++||++
T Consensus 235 ~~~-~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 235 LPS-KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CSC-SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred CCC-cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 322 2344455 9999999999999999999999
No 148
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.34 E-value=1.3e-10 Score=125.44 Aligned_cols=78 Identities=17% Similarity=0.237 Sum_probs=53.6
Q ss_pred CeEEEE-ECCCCCEEEEEEcCCC-----EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc---
Q 004255 371 PISALC-FDPSGTLLVTASVYGN-----NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH--- 441 (765)
Q Consensus 371 ~IsaLa-FSpdG~lLATaS~dGt-----~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp--- 441 (765)
.+..++ |+|||++|++++..+. .|+||++... |. ...+..+... ....+..++|+|
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~------g~--------~~~~~~~~~~-~~~~~~~~a~sp~~~ 319 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC------GS--------IEKQLFLSPT-PTSGGHSNAVSPCPW 319 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT------SC--------EEEEEEEEEC-SSCCTTCCCEEECTT
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC------CC--------EEEeeeeeec-CCCCcccceecCCCc
Confidence 478999 9999999988776443 7999998521 31 0111111111 112345789999
Q ss_pred CCCEEEEEeCC-CcEEEEeCCCC
Q 004255 442 YSQWIAIVSSK-GTCHVFVLSPF 463 (765)
Q Consensus 442 Dg~~Las~S~d-gTVhIwdl~~~ 463 (765)
||++|++++.+ ++|.||+++..
T Consensus 320 dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 320 SDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCEEEEEEcCCCeEEEEEEchh
Confidence 89999999865 89999999753
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.34 E-value=5.9e-10 Score=119.05 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=68.7
Q ss_pred CCCeEEEEECCCCc-------E------EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 004255 347 NAGIVVVKDFVTRA-------I------ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (765)
Q Consensus 347 ~dG~V~IwDl~s~~-------~------i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~ 413 (765)
.++.|.+|++.... . ......+......++|+|||++|+.++..+..|++||+.. |.
T Consensus 175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-------g~--- 244 (361)
T 3scy_A 175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-------GM--- 244 (361)
T ss_dssp TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-------TE---
T ss_pred CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-------Cc---
Confidence 35678888876433 1 1112233455788999999999988886566799999853 20
Q ss_pred ccCCcceEEEEEeccc-ccccEEEEEEccCCCEEEEEeCC--CcEEEEeCCCCCC
Q 004255 414 DWNSSHVHLYKLHRGI-TSATIQDICFSHYSQWIAIVSSK--GTCHVFVLSPFGG 465 (765)
Q Consensus 414 ~~~~s~~~l~~l~rG~-~~a~I~slaFSpDg~~Las~S~d--gTVhIwdl~~~gg 465 (765)
...+..+.... ......+++|||||++|+++..+ ++|.||+++...+
T Consensus 245 -----~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g 294 (361)
T 3scy_A 245 -----LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG 294 (361)
T ss_dssp -----EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC
T ss_pred -----eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC
Confidence 12233332111 11236899999999999777654 8999999985433
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.34 E-value=5.3e-10 Score=118.59 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=68.2
Q ss_pred CCCeEEEEECC-CCcEE--EEeccCC-CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 347 NAGIVVVKDFV-TRAII--SQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 347 ~dG~V~IwDl~-s~~~i--~~~~aH~-~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
.++.|.+||+. +++.. ..+..+. .....++|+|||++|+.++..+..|+||++... .| ....+
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g--------~~~~~ 226 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-----TG--------AFTQL 226 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT-----TT--------EEEEE
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC-----CC--------ceEEe
Confidence 45789999998 45432 2233332 357789999999988887766778999998531 02 01122
Q ss_pred EEEecccc----cccEEEEEEccCCCEEE-EEeCCCcEEEEeCCC
Q 004255 423 YKLHRGIT----SATIQDICFSHYSQWIA-IVSSKGTCHVFVLSP 462 (765)
Q Consensus 423 ~~l~rG~~----~a~I~slaFSpDg~~La-s~S~dgTVhIwdl~~ 462 (765)
..+..... ...+..++|||||++|+ +...+++|.+|++..
T Consensus 227 ~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 227 GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred eeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 23221111 13488999999999884 555689999999974
No 151
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.32 E-value=3.4e-10 Score=132.26 Aligned_cols=97 Identities=18% Similarity=0.121 Sum_probs=68.4
Q ss_pred CCCCeEEEEECC-CCcEEEEeccCCCCeEE-EEECCCCCEEEEEEcCCC----EEEEEeCCCCcccCCCCCCccccCCcc
Q 004255 346 DNAGIVVVKDFV-TRAIISQFKAHTSPISA-LCFDPSGTLLVTASVYGN----NINIFRIMPSCMRSGSGNHKYDWNSSH 419 (765)
Q Consensus 346 ~~dG~V~IwDl~-s~~~i~~~~aH~~~Isa-LaFSpdG~lLATaS~dGt----~IrVWdi~~~~~~~~sG~~~~~~~~s~ 419 (765)
..+|.++||++. +++.+..+..|...+.. ++|+|||+.|+.++.++. .|.+||+.. +
T Consensus 330 ~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-------~---------- 392 (706)
T 2z3z_A 330 RRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG-------G---------- 392 (706)
T ss_dssp CTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC-------C----------
T ss_pred ccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC-------C----------
Confidence 345677788775 56778888889888887 899999998877766553 455555532 2
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCC----CcEEEEeCCCC
Q 004255 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSK----GTCHVFVLSPF 463 (765)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d----gTVhIwdl~~~ 463 (765)
.+..+. +...+.+++|||||++|+.+..+ +++++||+...
T Consensus 393 -~~~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 393 -KTKDLT---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp -CCEESC---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred -Cceecc---CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 122222 22358899999999999877544 46999998753
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.31 E-value=1.3e-11 Score=138.04 Aligned_cols=98 Identities=13% Similarity=0.273 Sum_probs=79.7
Q ss_pred ccCCCCeEEEEECCCC--------c---EEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCC
Q 004255 344 DMDNAGIVVVKDFVTR--------A---IISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411 (765)
Q Consensus 344 ~~~~dG~V~IwDl~s~--------~---~i~~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~ 411 (765)
++..||.|+|||+.++ + .+..+.+|..+|.+|+|+|+ +.+||+++.||+ |+|||+.. +
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~iwD~~~-------~-- 182 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IAVLQVTE-------T-- 182 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EEEEEESS-------S--
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EEEEEcCC-------C--
Confidence 3567899999998654 2 25667789999999999998 899999999775 99999964 2
Q ss_pred ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 412 ~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
..+.... + +...|++++|||||++|++++.||+|+|||+.
T Consensus 183 --------~~~~~~~-~-~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 183 --------VKVCATL-P-STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp --------EEEEEEE-C-GGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred --------cceeecc-C-CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 2333332 3 34579999999999999999999999999987
No 153
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.30 E-value=7.4e-11 Score=145.36 Aligned_cols=95 Identities=7% Similarity=0.024 Sum_probs=78.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC---------CEEEEEeCCCCcccCCCCCCccccCC
Q 004255 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG---------NNINIFRIMPSCMRSGSGNHKYDWNS 417 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG---------t~IrVWdi~~~~~~~~sG~~~~~~~~ 417 (765)
.++.|++||+.+++....+.+|...|.+++|||||++||+++.++ ..|+|||+.. +
T Consensus 398 ~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~-------g-------- 462 (1045)
T 1k32_A 398 DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-------R-------- 462 (1045)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-------T--------
T ss_pred CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC-------C--------
Confidence 356899999999998888889999999999999999999988744 4799999854 2
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 418 s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
.+..+.. +...+.+++|+|||++|+.++.++...+|+..
T Consensus 463 ---~~~~l~~--~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 463 ---KIFAATT--ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp ---EEEECSC--SSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred ---cEEEeeC--CCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 3444432 23458889999999999999999999999865
No 154
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.30 E-value=5.7e-11 Score=138.85 Aligned_cols=103 Identities=12% Similarity=0.211 Sum_probs=65.9
Q ss_pred CCCeEEEEECCCCcEEEEecc-CCCCeE----EEEECCCCCEEEEE-EcCCC------EEEEEeCCCCcccCCCCCCccc
Q 004255 347 NAGIVVVKDFVTRAIISQFKA-HTSPIS----ALCFDPSGTLLVTA-SVYGN------NINIFRIMPSCMRSGSGNHKYD 414 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~a-H~~~Is----aLaFSpdG~lLATa-S~dGt------~IrVWdi~~~~~~~~sG~~~~~ 414 (765)
.+..|.+||+.++++...+.. |...+. .++|+|||+.|+.+ +.++. .|.+||+... +.
T Consensus 278 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~------~~---- 347 (723)
T 1xfd_A 278 NVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN------SS---- 347 (723)
T ss_dssp CEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC------SS----
T ss_pred CeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCC------CC----
Confidence 456899999999987776654 444443 78999999988865 44343 3555662121 10
Q ss_pred cCCcceEEEEEecccccccEEE-EEEccCCCEEEEEeCC---CcEEEEeCCCCCC
Q 004255 415 WNSSHVHLYKLHRGITSATIQD-ICFSHYSQWIAIVSSK---GTCHVFVLSPFGG 465 (765)
Q Consensus 415 ~~~s~~~l~~l~rG~~~a~I~s-laFSpDg~~Las~S~d---gTVhIwdl~~~gg 465 (765)
..++..+..|. ..+.. ++|||||++|+..+.+ ++++||+++..++
T Consensus 348 ----~~~~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 348 ----NDNIQSITSGD--WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp ----SCCCCBSCCSS--SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred ----ccceeEeecCC--eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence 00012222221 23444 6999999999877665 8999999986553
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.28 E-value=1.3e-11 Score=144.79 Aligned_cols=284 Identities=11% Similarity=0.036 Sum_probs=158.1
Q ss_pred CeEEEEEecCcEEEEEccCCCcceEeeeeccC---CEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcC
Q 004255 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDG---PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (765)
Q Consensus 75 ~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg---~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~ 151 (765)
+++++.+.++.+++||++ .++...++..+.. .|..++++|+. ..||+....
T Consensus 27 g~~~~~~~d~~i~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~SpDg-------------~~la~~~~~------------ 80 (719)
T 1z68_A 27 QEYLHQSADNNIVLYNIE-TGQSYTILSNRTMKSVNASNYGLSPDR-------------QFVYLESDY------------ 80 (719)
T ss_dssp SEEEEECTTSCEEEEESS-SCCEEEEECHHHHHTTTCSEEEECTTS-------------SEEEEEEEE------------
T ss_pred CeEEEEcCCCCEEEEEcC-CCcEEEEEccccccccceeeEEECCCC-------------CeEEEEecC------------
Confidence 456766666669999994 5777777776654 48899999862 266654321
Q ss_pred CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEE-
Q 004255 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVL- 228 (765)
Q Consensus 152 ~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~- 228 (765)
.+.|. ....++|++||+.+++.+........+..++++| +.||.+.++.|++||+.+++......
T Consensus 81 ------~~~~~------~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~ 148 (719)
T 1z68_A 81 ------SKLWR------YSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFN 148 (719)
T ss_dssp ------EECSS------SCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCC
T ss_pred ------ceeEE------eecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecC
Confidence 01110 0013689999999998743233456788899998 68888888999999999887643211
Q ss_pred ecCCcccCCCCccc------cccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhh
Q 004255 229 TYPVPQLAGQGAVG------INVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME 300 (765)
Q Consensus 229 t~p~p~~~~~~~~~------~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d 300 (765)
++... +-.+.+. +......++++| ++|||++.+. .+...+. +. .+.
T Consensus 149 ~~~~~--v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~----~~~~~~~-~~-----------------~~~-- 202 (719)
T 1z68_A 149 GRENK--IFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFND----TDIPVIA-YS-----------------YYG-- 202 (719)
T ss_dssp CBTTT--EEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEEC----TTSCEEE-EE-----------------ECC--
T ss_pred CCcCC--eEcccccceeeeecccCcccEEECCCCCEEEEEEECC----CCCceEE-ee-----------------ccC--
Confidence 11110 0000000 000113688998 8999976431 0000000 00 000
Q ss_pred hhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE--------EEeccCCCCe
Q 004255 301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII--------SQFKAHTSPI 372 (765)
Q Consensus 301 ~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i--------~~~~aH~~~I 372 (765)
.........+. +|. . ........|+|||+.+++.+ ..+.+|...+
T Consensus 203 ------~~~~~~~~~~~---yp~-------------~-----g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (719)
T 1z68_A 203 ------DEQYPRTINIP---YPK-------------A-----GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF 255 (719)
T ss_dssp ------SSSSCEEEEEE---CCB-------------T-----TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE
T ss_pred ------CCCCccceeec---CCC-------------C-----CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE
Confidence 00000000000 000 0 01122358999999988743 2245788899
Q ss_pred EEEEECCCCCEEEEEEcCC---CEEEEEe----CCCCcccCCCCCCccccCCcceEEEE-EecccccccEE-----EEEE
Q 004255 373 SALCFDPSGTLLVTASVYG---NNINIFR----IMPSCMRSGSGNHKYDWNSSHVHLYK-LHRGITSATIQ-----DICF 439 (765)
Q Consensus 373 saLaFSpdG~lLATaS~dG---t~IrVWd----i~~~~~~~~sG~~~~~~~~s~~~l~~-l~rG~~~a~I~-----slaF 439 (765)
..++|||||+++++....+ ..|.+|| +.+ |. ...+.. ...+ +...|. +++|
T Consensus 256 ~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-------g~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~ 319 (719)
T 1z68_A 256 SWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-------WD--------CPKTQEHIEES-RTGWAGGFFVSTPVF 319 (719)
T ss_dssp EEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-------EE--------CCGGGEEEEEC-SSSCSSSSSCCCCEE
T ss_pred EEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-------Cc--------eEEEEeccccc-CCceEccccCCccEE
Confidence 9999999998888865422 2477888 533 20 011111 0012 122344 7899
Q ss_pred ccCCCEEEE--EeCCCcEEEEeCCCCCC
Q 004255 440 SHYSQWIAI--VSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 440 SpDg~~Las--~S~dgTVhIwdl~~~gg 465 (765)
||||++|+. +..+|..+||-++..++
T Consensus 320 spdg~~l~~~~~~~~g~~~l~~~~~~~~ 347 (719)
T 1z68_A 320 SYDAISYYKIFSDKDGYKHIHYIKDTVE 347 (719)
T ss_dssp CTTSSCEEEEEECTTSCEEEEEESSCST
T ss_pred CCCCCeEEEEEEccCCceEEEEEECCCC
Confidence 999996654 55677766666554443
No 156
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.28 E-value=3.2e-10 Score=118.32 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=71.2
Q ss_pred CCCeEEEEEC---CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 347 NAGIVVVKDF---VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 347 ~dG~V~IwDl---~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
.++.|.+||+ ...+.+..+..+ ..+.+++|+|+|++|++++..+..|++||+... + ....+.
T Consensus 104 ~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~------~--------~~~~~~ 168 (343)
T 1ri6_A 104 NAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDD------G--------HLVAQD 168 (343)
T ss_dssp TTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT------S--------CEEEEE
T ss_pred CCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCC------C--------ceeeec
Confidence 3678999999 444555556555 358899999999999888833556999998541 2 011222
Q ss_pred --EEecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCC
Q 004255 424 --KLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGG 465 (765)
Q Consensus 424 --~l~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~gg 465 (765)
.+.. .....+.+++|+|||++|++++ .++++++|+++...+
T Consensus 169 ~~~~~~-~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g 212 (343)
T 1ri6_A 169 PAEVTT-VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG 212 (343)
T ss_dssp EEEEEC-STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred cccccc-CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 2221 1223588999999999876665 889999999976444
No 157
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.27 E-value=1.1e-10 Score=143.76 Aligned_cols=94 Identities=22% Similarity=0.266 Sum_probs=74.0
Q ss_pred CCeEE-EEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 348 AGIVV-VKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 348 dG~V~-IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
++.+. +||+.+++.. .+.+|...+.+++|||||++||+++.++ .|++||+.. | ... .+.
T Consensus 357 ~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~-~v~~~d~~t-------g----------~~~-~~~ 416 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRF-EIMTVDLET-------G----------KPT-VIE 416 (1045)
T ss_dssp TEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTS-EEEEEETTT-------C----------CEE-EEE
T ss_pred CCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCC-eEEEEECCC-------C----------ceE-Eec
Confidence 66788 9999887654 4558889999999999999999999855 699999965 3 222 222
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCC----------cEEEEeCCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVSSKG----------TCHVFVLSP 462 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S~dg----------TVhIwdl~~ 462 (765)
.+ +...|.+++|||||++||+++.++ +|++||+..
T Consensus 417 ~~-~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 417 RS-REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp EC-SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred cC-CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 23 234578999999999999988755 999999975
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.24 E-value=1.4e-09 Score=117.29 Aligned_cols=102 Identities=17% Similarity=0.202 Sum_probs=68.6
Q ss_pred CCeEEEEECC-CCcEE--EEec--cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE-
Q 004255 348 AGIVVVKDFV-TRAII--SQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH- 421 (765)
Q Consensus 348 dG~V~IwDl~-s~~~i--~~~~--aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~- 421 (765)
++.|.+||+. +++.. ..+. .|...+..++|+|||++|++++..+..|.||++... .|. ...
T Consensus 166 ~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g~--------~~~~ 232 (365)
T 1jof_A 166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-----THM--------PVYT 232 (365)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-----TCC--------EEEE
T ss_pred CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-----CCc--------EEEc
Confidence 3578999988 66542 3343 345678999999999999998876678999987431 021 011
Q ss_pred EEEEe---cccc--cc------cEEEEE-EccCCCEEEEEeCCC------cEEEEeCCC
Q 004255 422 LYKLH---RGIT--SA------TIQDIC-FSHYSQWIAIVSSKG------TCHVFVLSP 462 (765)
Q Consensus 422 l~~l~---rG~~--~a------~I~sla-FSpDg~~Las~S~dg------TVhIwdl~~ 462 (765)
...+. .+.. .. .+.+++ |||||++|++++.+. +|.+|+++.
T Consensus 233 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~ 291 (365)
T 1jof_A 233 HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC
Confidence 11221 1111 11 488999 999999998776432 899999974
No 159
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.24 E-value=8.4e-10 Score=114.81 Aligned_cols=217 Identities=11% Similarity=0.015 Sum_probs=131.0
Q ss_pred CEEEEEECCCCeEEEEEeCCC---CEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEecC-CcccCCCCccccc
Q 004255 173 TAVRFYSFQSHCYEHVLRFRS---SVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYP-VPQLAGQGAVGIN 244 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s---~V~sV~~s~--~~LaV~~--~~~I~iwD~~t~~~l~tl~t~p-~p~~~~~~~~~~~ 244 (765)
++|++||+.+++.+..+.... .+..+++++ +.|+++. ++.|++||+.+++.+.++.... .. . +
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~---~-- 81 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE----R---V-- 81 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE----E---E--
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc----c---c--
Confidence 689999999999999998776 688899987 4565543 3579999999999877776321 10 0 0
Q ss_pred cccceeEEcc--ceEEEecCCceec------CCcc-ccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecc
Q 004255 245 VGYGPMAVGP--RWLAYASNTLLLS------NSGR-LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSK 315 (765)
Q Consensus 245 ~~~~~~Alsp--r~LAyas~~~~~~------~~G~-~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~ 315 (765)
.....++++| ++|+++....-.. ..+. ..++..+ +..+ +.+.
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~------------~~~~----------------~~~~- 132 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET------------LSRR----------------KAFE- 132 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT------------TEEE----------------EEEE-
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC------------CcEE----------------EEEe-
Confidence 0123477887 6777764110000 0000 0111000 0000 0110
Q ss_pred cccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCC--CCeEEEEECCCCCEEEEEEcCCCE
Q 004255 316 YCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT--SPISALCFDPSGTLLVTASVYGNN 393 (765)
Q Consensus 316 ~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~--~~IsaLaFSpdG~lLATaS~dGt~ 393 (765)
.........++++++... .+ ++.|.+||+.+++.+..+..+. .++ +|+|||++|+.++..+..
T Consensus 133 ------~~~~~~~~~~s~dg~~l~----~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~ 197 (337)
T 1pby_B 133 ------APRQITMLAWARDGSKLY----GL--GRDLHVMDPEAGTLVEDKPIQSWEAET---YAQPDVLAVWNQHESSGV 197 (337)
T ss_dssp ------CCSSCCCEEECTTSSCEE----EE--SSSEEEEETTTTEEEEEECSTTTTTTT---BCCCBCCCCCCCCTTTTE
T ss_pred ------CCCCcceeEECCCCCEEE----Ee--CCeEEEEECCCCcEeeeeeccccCCCc---eeCCCccEEeeeccCCCc
Confidence 001111223344444322 12 5789999999999888887654 443 899999988766654543
Q ss_pred -----------------------EEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 004255 394 -----------------------INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (765)
Q Consensus 394 -----------------------IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S 450 (765)
|.+||+.. +. .....+. .....+.+++|+|||++|+++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-------~~---------~~~~~~~--~~~~~~~~~~~s~dg~~l~~~- 258 (337)
T 1pby_B 198 MATPFYTARKDIDPADPTAYRTGLLTMDLET-------GE---------MAMREVR--IMDVFYFSTAVNPAKTRAFGA- 258 (337)
T ss_dssp EEEEEEEEBTTSCTTSGGGEEEEEEEEETTT-------CC---------EEEEEEE--ECSSCEEEEEECTTSSEEEEE-
T ss_pred eeeeeeccccccccccccccccceEEEeCCC-------CC---------ceEeecC--CCCCceeeEEECCCCCEEEEe-
Confidence 57888754 21 1122222 122458899999999999988
Q ss_pred CCCcEEEEeCCC
Q 004255 451 SKGTCHVFVLSP 462 (765)
Q Consensus 451 ~dgTVhIwdl~~ 462 (765)
+++|++||+..
T Consensus 259 -~~~v~~~d~~~ 269 (337)
T 1pby_B 259 -YNVLESFDLEK 269 (337)
T ss_dssp -ESEEEEEETTT
T ss_pred -CCeEEEEECCC
Confidence 79999999864
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.17 E-value=2.7e-09 Score=111.74 Aligned_cols=57 Identities=18% Similarity=0.086 Sum_probs=46.1
Q ss_pred CEEEEEECCCCeEEEEEeCCC--CEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEe
Q 004255 173 TAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s--~V~sV~~s~--~~LaV~~--~~~I~iwD~~t~~~l~tl~t 229 (765)
++|.+||+.+++.+.++.... .+..+++++ +.++++. +++|++||+.+++.+..+..
T Consensus 21 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 21 NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 689999999999999998776 778888887 4555543 45799999999988777653
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.15 E-value=1.7e-09 Score=123.76 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=65.9
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEE--------ECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255 350 IVVVKDFVTRAIISQFKAHTSPISALC--------FDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (765)
Q Consensus 350 ~V~IwDl~s~~~i~~~~aH~~~IsaLa--------FSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~ 421 (765)
.|.+||+.+++.. .+..|...+..++ |+|||.++++++.+| .++||++ - ..
T Consensus 219 ~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g-~~~l~~~-g------------------~~ 277 (582)
T 3o4h_A 219 RLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG-RSAVFID-G------------------ER 277 (582)
T ss_dssp EEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETT-EEEEEET-T------------------EE
T ss_pred EEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCC-cEEEEEE-C------------------Ce
Confidence 7899999998887 8888888887777 999999999999866 5999997 2 12
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCc-EEEEeCC
Q 004255 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGT-CHVFVLS 461 (765)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgT-VhIwdl~ 461 (765)
+.. ....|.+++|| ||+++++++.+.+ -.||.++
T Consensus 278 ~~~-----~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 278 VEA-----PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp ECC-----CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred ecc-----CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 211 12458899999 9999999888765 3444444
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.11 E-value=7.9e-10 Score=131.10 Aligned_cols=292 Identities=14% Similarity=0.085 Sum_probs=156.6
Q ss_pred CCeEEEEEecCcEEEEEccCCCcceEeeeeccCC---EEE--EEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCC
Q 004255 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGP---VSF--LQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQ 148 (765)
Q Consensus 74 ~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~---V~~--v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~ 148 (765)
++++|+.+ ++.+++||+. +++...++..+... +.+ +.++|+ +..||+...+..
T Consensus 27 dg~~~~~~-~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Spd-------------g~~l~~~~~~~~------- 84 (740)
T 4a5s_A 27 DHEYLYKQ-ENNILVFNAE-YGNSSVFLENSTFDEFGHSINDYSISPD-------------GQFILLEYNYVK------- 84 (740)
T ss_dssp SSEEEEEE-TTEEEEEETT-TCCEEEEECTTTTTTCCSCCCEEEECTT-------------SSEEEEEEEEEE-------
T ss_pred CCcEEEEc-CCcEEEEECC-CCceEEEEechhhhhhcccccceEECCC-------------CCEEEEEECCee-------
Confidence 35788887 6679999995 67778888877643 223 667765 235665443210
Q ss_pred CcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEE
Q 004255 149 NRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFS 226 (765)
Q Consensus 149 ~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~t 226 (765)
+ |. +.....+.+||+++|+......+...+..++++| +.||.+.++.|++||+.+++..+
T Consensus 85 -------~----~r------~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~- 146 (740)
T 4a5s_A 85 -------Q----WR------HSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYR- 146 (740)
T ss_dssp -------C----SS------SCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEE-
T ss_pred -------e----EE------EccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEE-
Confidence 0 00 0012578899999998664334567899999998 78888888999999999887432
Q ss_pred EEecCCcccCCCCccc------cccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeeh
Q 004255 227 VLTYPVPQLAGQGAVG------INVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA 298 (765)
Q Consensus 227 l~t~p~p~~~~~~~~~------~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a 298 (765)
|........+-.+.+. +-.....+++|| ++|||...+.- ....|.... +.
T Consensus 147 lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~----~v~~~~~~~------------------~~ 204 (740)
T 4a5s_A 147 ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDT----EVPLIEYSF------------------YS 204 (740)
T ss_dssp CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECT----TCCEEEEEE------------------CC
T ss_pred EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEccc----CCceEEEEe------------------ec
Confidence 2211110000000000 000113478998 89999753210 000000000 00
Q ss_pred hhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC---Cc--EEEEec------c
Q 004255 299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT---RA--IISQFK------A 367 (765)
Q Consensus 299 ~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s---~~--~i~~~~------a 367 (765)
.. . +.......+ -+|. .+ .......|.|||+.+ ++ ....+. +
T Consensus 205 ~~---~---~~~~~~~~~---~yp~----------~G--------~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~ 257 (740)
T 4a5s_A 205 DE---S---LQYPKTVRV---PYPK----------AG--------AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLI 257 (740)
T ss_dssp ST---T---CSSCEEEEE---ECCB----------TT--------SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHT
T ss_pred CC---C---CCCCcceee---cCCC----------Cc--------CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCC
Confidence 00 0 000000000 0000 00 111234789999998 73 223343 3
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCC---CEEEEEeCCCCcccCCCCCCccccCC-cceEEEEEecccccccE-----EEEE
Q 004255 368 HTSPISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNS-SHVHLYKLHRGITSATI-----QDIC 438 (765)
Q Consensus 368 H~~~IsaLaFSpdG~lLATaS~dG---t~IrVWdi~~~~~~~~sG~~~~~~~~-s~~~l~~l~rG~~~a~I-----~sla 438 (765)
|...|..++|+|||++++.....+ ..|++||+.+ |... +.. ....+.+ .+ +...| .+.+
T Consensus 258 ~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-------g~~~--~~~~~~~~l~~--~~-~~~~v~~~~~~~p~ 325 (740)
T 4a5s_A 258 GDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-------SSGR--WNCLVARQHIE--MS-TTGWVGRFRPSEPH 325 (740)
T ss_dssp SCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-------TTTE--EEECGGGCEEE--EC-SSSCSSSSSCCCCE
T ss_pred CCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-------Cccc--cceeEEEEeee--cc-CCceEccCcCCCce
Confidence 888899999999999877665433 2589999865 2100 000 0011211 12 12222 3689
Q ss_pred EccCCCEEE-EEe-CCCcEEEEeCCCCCCC
Q 004255 439 FSHYSQWIA-IVS-SKGTCHVFVLSPFGGD 466 (765)
Q Consensus 439 FSpDg~~La-s~S-~dgTVhIwdl~~~gg~ 466 (765)
|||||++|+ ..+ .+|.-|||-++..++.
T Consensus 326 fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 326 FTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred EcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 999999887 665 5666666554444443
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.09 E-value=5e-07 Score=92.94 Aligned_cols=95 Identities=16% Similarity=0.185 Sum_probs=69.0
Q ss_pred CCeEEEEECCCCcEEEEeccC--CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255 348 AGIVVVKDFVTRAIISQFKAH--TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH--~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l 425 (765)
++.|++||. +++.+..+..+ ...+..|+|+++|+++++...++..|++||.. | ..+..+
T Consensus 184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--------g----------~~~~~~ 244 (286)
T 1q7f_A 184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--------G----------QLISAL 244 (286)
T ss_dssp GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--------S----------CEEEEE
T ss_pred CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--------C----------CEEEEE
Confidence 567889997 45566666543 46788999999999998887644369999952 3 244444
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
..+.....+.+++|+|||+++++ +.+++|+||++..
T Consensus 245 ~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 245 ESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred cccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 43322234789999999987766 6799999999865
No 164
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.08 E-value=5.7e-10 Score=130.79 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=41.4
Q ss_pred CEEEEEECCCCeEEEEEeCCC----CEEEEEecC--CeEEEEeC----------CeEEEEECCCCce
Q 004255 173 TAVRFYSFQSHCYEHVLRFRS----SVCMVRCSP--RIVAVGLA----------TQIYCFDALTLEN 223 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s----~V~sV~~s~--~~LaV~~~----------~~I~iwD~~t~~~ 223 (765)
++|++||+.+++....+..+. .|.+++++| +.|+.+.. .+|++||+.+++.
T Consensus 36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~ 102 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF 102 (719)
T ss_dssp SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence 589999999999888777653 388999987 67776653 6799999999865
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.08 E-value=1.9e-08 Score=107.73 Aligned_cols=97 Identities=12% Similarity=0.056 Sum_probs=57.7
Q ss_pred CeEEEEECCCCcEEEEeccCC--CCeEEEEECCCCCEEEEEEcC-CC---EEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 349 GIVVVKDFVTRAIISQFKAHT--SPISALCFDPSGTLLVTASVY-GN---NINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~--~~IsaLaFSpdG~lLATaS~d-Gt---~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
..|.++|+..++. ..+..+. ..+..++|||||+.||..+.+ +. .|.+||+.. |. .+.+
T Consensus 216 ~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-------g~--------~~~l 279 (388)
T 3pe7_A 216 ARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET-------LE--------NRQL 279 (388)
T ss_dssp CSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT-------CC--------EEEE
T ss_pred ceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCC-------Cc--------eEEE
Confidence 3577778765543 4444444 357889999999988765543 32 399999864 31 1233
Q ss_pred EEEecccccc--cEEEEEEccCCCEEEEE---------eCCCcEEEEeCCC
Q 004255 423 YKLHRGITSA--TIQDICFSHYSQWIAIV---------SSKGTCHVFVLSP 462 (765)
Q Consensus 423 ~~l~rG~~~a--~I~slaFSpDg~~Las~---------S~dgTVhIwdl~~ 462 (765)
..+. +.... ....++|||||++|+.. ..+..|.+||+..
T Consensus 280 ~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 280 TSMP-ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp EEEC-CEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred EcCC-CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 3332 10000 01124799999998865 4456899999875
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.06 E-value=2e-08 Score=107.48 Aligned_cols=255 Identities=11% Similarity=-0.009 Sum_probs=138.3
Q ss_pred CCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255 74 FKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (765)
Q Consensus 74 ~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~ 152 (765)
+++.|+.+..+ .+.+||++ .++...++..+.+.+....+..+| ...+|+.+..+.. ...
T Consensus 91 dg~~l~~~~~~~~l~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~-----------dg~~l~~~~~~~~-~~~------- 150 (388)
T 3pe7_A 91 DDDALFYVKDGRNLMRVDLA-TLEENVVYQVPAEWVGYGTWVANS-----------DCTKLVGIEIRRE-DWV------- 150 (388)
T ss_dssp TSSEEEEEETTTEEEEEETT-TCCEEEEEECCTTEEEEEEEEECT-----------TSSEEEEEEEEGG-GCC-------
T ss_pred CCCEEEEEeCCCeEEEEECC-CCcceeeeechhhcccccceeECC-----------CCCeeccccccCc-ccc-------
Confidence 45566666654 69999995 577777777666666555543222 1224443221110 000
Q ss_pred CCCcccCCcCC-CCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC---CeEEEEeC-------CeEEEEECCCC
Q 004255 153 LGGVRDGMMDS-QSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLA-------TQIYCFDALTL 221 (765)
Q Consensus 153 ~~~~r~g~~~~-~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~---~~LaV~~~-------~~I~iwD~~t~ 221 (765)
....|.. ...........|.+||+.+++..........+..++++| +.|+.+.. ..|+++|+.+.
T Consensus 151 ----~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (388)
T 3pe7_A 151 ----PLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT 226 (388)
T ss_dssp ----CCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC
T ss_pred ----cccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence 0000000 000000123689999999998776666677888999988 45655442 26888888765
Q ss_pred ceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehh
Q 004255 222 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 299 (765)
Q Consensus 222 ~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~ 299 (765)
+ ...+..+... ......+++| ++|||.+..
T Consensus 227 ~-~~~l~~~~~~-----------~~~~~~~~spdg~~l~~~~~~------------------------------------ 258 (388)
T 3pe7_A 227 N-MRKVKTHAEG-----------ESCTHEFWVPDGSALVYVSYL------------------------------------ 258 (388)
T ss_dssp C-CEESCCCCTT-----------EEEEEEEECTTSSCEEEEEEE------------------------------------
T ss_pred c-eEEeeeCCCC-----------cccccceECCCCCEEEEEecC------------------------------------
Confidence 4 2333221110 0012234554 444443311
Q ss_pred hhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE--EEEeccCCCC---eEE
Q 004255 300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI--ISQFKAHTSP---ISA 374 (765)
Q Consensus 300 d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~--i~~~~aH~~~---Isa 374 (765)
.+...+.|.+||+.+++. +..+.++... ...
T Consensus 259 --------------------------------------------~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 294 (388)
T 3pe7_A 259 --------------------------------------------KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDG 294 (388)
T ss_dssp --------------------------------------------TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTS
T ss_pred --------------------------------------------CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCC
Confidence 011234688999988863 3344431110 112
Q ss_pred EEECCCCCEEEEEE--------cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc---------cccEEEE
Q 004255 375 LCFDPSGTLLVTAS--------VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT---------SATIQDI 437 (765)
Q Consensus 375 LaFSpdG~lLATaS--------~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~---------~a~I~sl 437 (765)
++|+|||+.|+... ..+..|.+||+.. + .+..+..+.. ...+.++
T Consensus 295 ~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-------~-----------~~~~l~~~~~~~~~~~~~~~~~~~~~ 356 (388)
T 3pe7_A 295 SLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN-------G-----------TQHRVARHDTSWKVFEGDRQVTHPHP 356 (388)
T ss_dssp SEEEEEECCC------------CCCCEEEEEETTT-------T-----------EEEEEEECCCCCCCBTTBSSTTCCCC
T ss_pred CeEccCCCcceeEeeeccccccCCCCEEEEEeccC-------C-----------ceEEeccccCcccccccccccCCCCc
Confidence 37999999988653 2245799999854 2 3334432211 0036788
Q ss_pred EEccCCCEEEEEeC-CCcEEEEeCCC
Q 004255 438 CFSHYSQWIAIVSS-KGTCHVFVLSP 462 (765)
Q Consensus 438 aFSpDg~~Las~S~-dgTVhIwdl~~ 462 (765)
+|||||++|+.++. +|..+||.++.
T Consensus 357 ~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 357 SFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred cCCCCCCEEEEEecCCCceeEEEEEC
Confidence 99999999887764 78888988764
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.00 E-value=1.5e-07 Score=102.22 Aligned_cols=95 Identities=8% Similarity=0.078 Sum_probs=65.8
Q ss_pred CCCeEEEEECCCCc--EEEEecc------CC----CCeEEEEECCCCCEEEEEEc-C---------CCEEEEEeCCCCcc
Q 004255 347 NAGIVVVKDFVTRA--IISQFKA------HT----SPISALCFDPSGTLLVTASV-Y---------GNNINIFRIMPSCM 404 (765)
Q Consensus 347 ~dG~V~IwDl~s~~--~i~~~~a------H~----~~IsaLaFSpdG~lLATaS~-d---------Gt~IrVWdi~~~~~ 404 (765)
.+|.|.++|+...+ .+..+.- +. .....++|+|||..|..+.. + ...|.|||+.+
T Consensus 219 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t--- 295 (361)
T 2oiz_A 219 YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT--- 295 (361)
T ss_dssp TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT---
T ss_pred CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC---
Confidence 56889999987653 2222211 11 11123789999888776643 1 23699999865
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 405 ~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
+ +.+.++.-|. ..+|+|+|||++|++++. ++|.|||..+.
T Consensus 296 ----~----------~~v~~i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 296 ----K----------QRVARIPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp ----T----------EEEEEEECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred ----C----------cEEEEEecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 2 4666665442 789999999999998887 99999998864
No 168
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.92 E-value=5.2e-07 Score=96.22 Aligned_cols=230 Identities=9% Similarity=-0.042 Sum_probs=141.8
Q ss_pred CeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 75 KQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 75 ~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
+++.++...+ .+.+||.. ++++...+. .....+.|++.|+ . .|.+....
T Consensus 54 ~~lyv~~~~~~~v~viD~~-t~~~~~~i~-~~~~p~~i~~~~~-------------g-~lyv~~~~-------------- 103 (328)
T 3dsm_A 54 GIGWIVVNNSHVIFAIDIN-TFKEVGRIT-GFTSPRYIHFLSD-------------E-KAYVTQIW-------------- 103 (328)
T ss_dssp TEEEEEEGGGTEEEEEETT-TCCEEEEEE-CCSSEEEEEEEET-------------T-EEEEEEBS--------------
T ss_pred CEEEEEEcCCCEEEEEECc-ccEEEEEcC-CCCCCcEEEEeCC-------------C-eEEEEECC--------------
Confidence 4577777654 49999995 566655553 2345677777653 1 23332211
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------CEEEEEecCCeEEEEe---CCeEEEEECCCCcee
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSPRIVAVGL---ATQIYCFDALTLENK 224 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s------~V~sV~~s~~~LaV~~---~~~I~iwD~~t~~~l 224 (765)
.++|.+||+++++.+.++.... ....|++..+.|.++. ++.|.+||+.+++.+
T Consensus 104 ------------------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~ 165 (328)
T 3dsm_A 104 ------------------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVV 165 (328)
T ss_dssp ------------------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred ------------------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence 2589999999999998887554 5555666666555553 568999999999887
Q ss_pred EEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhh
Q 004255 225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS 302 (765)
Q Consensus 225 ~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~ 302 (765)
.++.....| ..+++++ ++++.....
T Consensus 166 ~~i~~g~~p--------------~~i~~~~dG~l~v~~~~~--------------------------------------- 192 (328)
T 3dsm_A 166 DELTIGIQP--------------TSLVMDKYNKMWTITDGG--------------------------------------- 192 (328)
T ss_dssp EEEECSSCB--------------CCCEECTTSEEEEEBCCB---------------------------------------
T ss_pred EEEEcCCCc--------------cceEEcCCCCEEEEECCC---------------------------------------
Confidence 777643222 1234443 211111000
Q ss_pred hhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC-CCCeEEEEECCCC
Q 004255 303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSG 381 (765)
Q Consensus 303 k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH-~~~IsaLaFSpdG 381 (765)
+. . .......+.|.++|..+++.+..+... ......|+|+|||
T Consensus 193 -------------~~--------~---------------~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~ 236 (328)
T 3dsm_A 193 -------------YE--------G---------------SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTR 236 (328)
T ss_dssp -------------CT--------T---------------CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTS
T ss_pred -------------cc--------C---------------CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCC
Confidence 00 0 000112578999999999888777533 2357899999999
Q ss_pred CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC-CCEEEEE----eCCCcEE
Q 004255 382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY-SQWIAIV----SSKGTCH 456 (765)
Q Consensus 382 ~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD-g~~Las~----S~dgTVh 456 (765)
++|..+.. .|.+||+.+ +... . ... +..+ ......|+++|+ ++..++. ..+++|.
T Consensus 237 ~~lyv~~~---~v~~~d~~t-------~~~~----~--~~~--~~~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~ 296 (328)
T 3dsm_A 237 DTLYWINN---DIWRMPVEA-------DRVP----V--RPF--LEFR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVY 296 (328)
T ss_dssp CEEEEESS---SEEEEETTC-------SSCC----S--SCS--BCCC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEE
T ss_pred CEEEEEcc---EEEEEECCC-------Ccee----e--eee--ecCC--CCceEEEEEcCCCCeEEEEcccccccCCEEE
Confidence 99987754 488999854 2100 0 000 0001 234788999995 5555555 5789999
Q ss_pred EEeCC
Q 004255 457 VFVLS 461 (765)
Q Consensus 457 Iwdl~ 461 (765)
+||.+
T Consensus 297 v~d~~ 301 (328)
T 3dsm_A 297 RYSPQ 301 (328)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 99986
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.87 E-value=4.6e-08 Score=104.42 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=62.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEc---------------CCCEEEEEeCCCCcccCCCCCCc
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASV---------------YGNNINIFRIMPSCMRSGSGNHK 412 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp-dG~lLATaS~---------------dGt~IrVWdi~~~~~~~~sG~~~ 412 (765)
+.|.+||+.+++...... .. ... ++|+| ||++|++++. .+..|.+||+.. +
T Consensus 264 ~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-------~--- 330 (396)
T 3c5m_A 264 RVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-------K--- 330 (396)
T ss_dssp EEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT-------T---
T ss_pred ceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc-------C---
Confidence 468999998876533221 11 233 89999 9999988652 235699999854 2
Q ss_pred cccCCcceEEEEEeccccc---------ccEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCCCCccc
Q 004255 413 YDWNSSHVHLYKLHRGITS---------ATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGGDSGF 469 (765)
Q Consensus 413 ~~~~~s~~~l~~l~rG~~~---------a~I~slaFSpDg~~Las~S~-dgTVhIwdl~~~gg~~~~ 469 (765)
.+..+..+... ..+.+++|+|||++|+.++. ++...||.++..++...+
T Consensus 331 --------~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~ 389 (396)
T 3c5m_A 331 --------SAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHL 389 (396)
T ss_dssp --------BCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC--
T ss_pred --------ceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccccc
Confidence 11122211110 01456899999999887775 677888888766665544
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.86 E-value=1.3e-07 Score=109.55 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=66.3
Q ss_pred CeEEEEECC-CC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC-EEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 349 GIVVVKDFV-TR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGN-NINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 349 G~V~IwDl~-s~---~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt-~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
..|.+||+. ++ +......+|...+..++|+|||+++++++.+|. .|.+||+.. | .+.
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~-------~-----------~~~ 278 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT-------G-----------AAT 278 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT-------C-----------CEE
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCC-------C-----------cee
Confidence 479999998 56 444444566789999999999998888877553 344444422 2 112
Q ss_pred EEecccccc-------cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 424 KLHRGITSA-------TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 424 ~l~rG~~~a-------~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
.+..+.... .+.+++|+||++++++++. ++++||.++..++
T Consensus 279 ~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 279 QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred ecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence 222111110 1567999999999999999 9999997765444
No 171
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.85 E-value=8.2e-07 Score=93.54 Aligned_cols=96 Identities=11% Similarity=0.188 Sum_probs=67.0
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEE-EEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISA-LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~Isa-LaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
...|.+|| +++....+..|...+.. ++|+ || ++++++.++ .++|| +.. | .. ..+.
T Consensus 243 ~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~-~~~l~-~~~-------g----------~~-~~~~ 298 (347)
T 2gop_A 243 HNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG-SVNLY-IWD-------G----------EI-KPIA 298 (347)
T ss_dssp SCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETT-EEEEE-EES-------S----------SE-EEEE
T ss_pred cceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCC-cEEEE-EcC-------C----------ce-EEEe
Confidence 35688888 66665556677888886 9999 99 999998866 59999 842 3 12 2333
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCcE-EEEeCCCCCCCccccccc
Q 004255 427 RGITSATIQDICFSHYSQWIAIVSSKGTC-HVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S~dgTV-hIwdl~~~gg~~~~~~h~ 473 (765)
.+ ...|.+++|+| +++++++.+++. +||.++ +....+..|+
T Consensus 299 ~~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~--g~~~~lt~~n 340 (347)
T 2gop_A 299 KG--RHWIMGFDVDE--IVVYLKETATRLRELFTWD--GEEKQLTDYN 340 (347)
T ss_dssp CS--SSEEEEEEESS--SEEEEEECSSSCCEEEEES--SSEEECCCTT
T ss_pred cC--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC--CcEEEecccc
Confidence 33 34689999999 677777777765 899887 4333344444
No 172
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.82 E-value=2.4e-08 Score=118.34 Aligned_cols=169 Identities=12% Similarity=0.136 Sum_probs=111.7
Q ss_pred CCCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCcee
Q 004255 191 FRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLL 266 (765)
Q Consensus 191 ~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~ 266 (765)
|.....++++++ ++|+.+ ++.|++||+.++++...+..+.... .+.....+++|| ++||++....
T Consensus 15 ~~~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~Spdg~~l~~~~~~~-- 83 (740)
T 4a5s_A 15 YRLKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDE--------FGHSINDYSISPDGQFILLEYNYV-- 83 (740)
T ss_dssp SCCCCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTT--------CCSCCCEEEECTTSSEEEEEEEEE--
T ss_pred ccccccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhh--------hcccccceEECCCCCEEEEEECCe--
Confidence 444566788887 566666 8899999999999866655544310 000112367787 7777775421
Q ss_pred cCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccC
Q 004255 267 SNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD 346 (765)
Q Consensus 267 ~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~ 346 (765)
+..++ .
T Consensus 84 ---------------------------------------------~~~r~-----------------------------~ 89 (740)
T 4a5s_A 84 ---------------------------------------------KQWRH-----------------------------S 89 (740)
T ss_dssp ---------------------------------------------ECSSS-----------------------------C
T ss_pred ---------------------------------------------eeEEE-----------------------------c
Confidence 00000 1
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
..|.+.|||+.+++. ..+..|...+...+|||||+.||.++. ..|.|||+.. |. ...+.
T Consensus 90 ~~~~~~~~d~~~~~~-~~l~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~-------~~-----------~~~lt 148 (740)
T 4a5s_A 90 YTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVWN--NDIYVKIEPN-------LP-----------SYRIT 148 (740)
T ss_dssp EEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEET--TEEEEESSTT-------SC-----------CEECC
T ss_pred cceEEEEEECCCCcE-EEcccCCCcceeeEECCCCCEEEEEEC--CeEEEEECCC-------Cc-----------eEEEc
Confidence 235789999999875 457788889999999999999999865 4699999854 21 11111
Q ss_pred -ccccc----------------ccEEEEEEccCCCEEEEEeCCCc-EEEEeCCCCCC
Q 004255 427 -RGITS----------------ATIQDICFSHYSQWIAIVSSKGT-CHVFVLSPFGG 465 (765)
Q Consensus 427 -rG~~~----------------a~I~slaFSpDg~~Las~S~dgT-VhIwdl~~~gg 465 (765)
.|... .....++|||||++||.++.|.+ +.+|++..++.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~ 205 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 205 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS
T ss_pred CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC
Confidence 11110 01134899999999999987776 88998865543
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.82 E-value=6.5e-07 Score=95.43 Aligned_cols=91 Identities=9% Similarity=-0.000 Sum_probs=58.5
Q ss_pred CeEEEEECCCCcEEEEeccCC--CCeEEEEECCCCCEEEEEEcCC----CEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 349 GIVVVKDFVTRAIISQFKAHT--SPISALCFDPSGTLLVTASVYG----NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~--~~IsaLaFSpdG~lLATaS~dG----t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
..|.+||+.+++.. .+..+. ..+..++|+|||++|+.++.++ ..|.+||+.. |. ...+
T Consensus 216 ~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-------g~--------~~~l 279 (396)
T 3c5m_A 216 ARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET-------LE--------NEEV 279 (396)
T ss_dssp CCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT-------CC--------EEEE
T ss_pred ceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC-------CC--------eEEe
Confidence 35777887665533 333332 3578899999999888776532 3499999854 21 1222
Q ss_pred EEEecccccccEEEEEEcc-CCCEEEEEe----------------CCCcEEEEeCCC
Q 004255 423 YKLHRGITSATIQDICFSH-YSQWIAIVS----------------SKGTCHVFVLSP 462 (765)
Q Consensus 423 ~~l~rG~~~a~I~slaFSp-Dg~~Las~S----------------~dgTVhIwdl~~ 462 (765)
..+. + .. ++|+| ||++|+.++ .+..|.+||+..
T Consensus 280 ~~~~-~-----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 280 MVMP-P-----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp EECC-S-----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred eeCC-C-----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 2211 1 23 89999 999998765 246788888764
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.81 E-value=2e-06 Score=91.39 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=71.4
Q ss_pred CCCeEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEc------CCCEEEEEeCCCCcccCCCCCCccccCCc
Q 004255 347 NAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASV------YGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~--aH~~~IsaLaFSpdG~lLATaS~------dGt~IrVWdi~~~~~~~~sG~~~~~~~~s 418 (765)
.++.|++||..+++.+..+. .+...+.+++|+| |.++++.+. .+..|++||... |
T Consensus 216 ~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-------g--------- 278 (329)
T 3fvz_A 216 ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-------G--------- 278 (329)
T ss_dssp TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-------C---------
T ss_pred CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-------C---------
Confidence 46789999999899888884 5667889999999 544444332 123599999854 3
Q ss_pred ceEEEEEecc-cccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 419 HVHLYKLHRG-ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 419 ~~~l~~l~rG-~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
..+..+..+ .......+|+|+|||+.+++.+.+++|++|++..
T Consensus 279 -~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 279 -EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp -CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred -eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 345554211 1123589999999998888889999999999874
No 175
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.79 E-value=4.9e-06 Score=88.61 Aligned_cols=178 Identities=6% Similarity=-0.049 Sum_probs=117.0
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEEEEEecC-CeEEEEe--CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 249 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~-~~LaV~~--~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~ 249 (765)
++|.+||.++++.+.++........|++++ ..|.++. ++.|++||+.+++...++....... +
T Consensus 64 ~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~---~----------- 129 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDM---E----------- 129 (328)
T ss_dssp TEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCT---T-----------
T ss_pred CEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccc---c-----------
Confidence 589999999999999997666788888843 4555544 6789999999998777665322100 0
Q ss_pred eEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCc
Q 004255 250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV 329 (765)
Q Consensus 250 ~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~ 329 (765)
. -.|.-|++.+.. + +|
T Consensus 130 ~-~~p~~i~~~~~~-l---------------------------yv----------------------------------- 145 (328)
T 3dsm_A 130 S-GSTEQMVQYGKY-V---------------------------YV----------------------------------- 145 (328)
T ss_dssp T-CBCCCEEEETTE-E---------------------------EE-----------------------------------
T ss_pred C-CCcceEEEECCE-E---------------------------EE-----------------------------------
Confidence 0 001122221110 0 00
Q ss_pred cCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC---------CCEEEEEeCC
Q 004255 330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY---------GNNINIFRIM 400 (765)
Q Consensus 330 s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d---------Gt~IrVWdi~ 400 (765)
+....++.|.++|+.+++.+..+..... ...++|+|+|++++++..+ ...|.+||..
T Consensus 146 -------------~~~~~~~~v~viD~~t~~~~~~i~~g~~-p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 146 -------------NCWSYQNRILKIDTETDKVVDELTIGIQ-PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp -------------EECTTCCEEEEEETTTTEEEEEEECSSC-BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred -------------EcCCCCCEEEEEECCCCeEEEEEEcCCC-ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 0011367899999999998888875433 4679999999988877653 1468999975
Q ss_pred CCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 401 ~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
+ + ..+..+.-.. ......++|+||+++|.++.. +|.+||+..
T Consensus 212 t-------~----------~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t 253 (328)
T 3dsm_A 212 T-------F----------TVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEA 253 (328)
T ss_dssp T-------T----------EEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTC
T ss_pred C-------C----------eEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCC
Confidence 4 2 2333332210 124688999999999988765 888888764
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.75 E-value=1e-06 Score=92.80 Aligned_cols=82 Identities=7% Similarity=0.084 Sum_probs=54.5
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-------CEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG-------t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
.|.++| +++ +..+..+ ..+..+ +|||++||.++.++ ..|.+|| . | ..
T Consensus 201 ~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-------~-----------~~ 254 (347)
T 2gop_A 201 DIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-------K-----------EV 254 (347)
T ss_dssp EEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-------S-----------CE
T ss_pred cEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-------C-----------ce
Confidence 455566 444 3445445 555554 99999998888643 3566776 2 2 12
Q ss_pred EEEecccccccEEE-EEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 423 YKLHRGITSATIQD-ICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 423 ~~l~rG~~~a~I~s-laFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
..+..+ ....|.+ ++|+ || ++++++.+++++|| +.
T Consensus 255 ~~l~~~-~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 255 MGILDE-VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp EESSTT-CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred Eecccc-CCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 233323 2245776 9999 99 99999999999999 87
No 177
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.74 E-value=4.2e-06 Score=86.70 Aligned_cols=89 Identities=11% Similarity=0.154 Sum_probs=59.4
Q ss_pred CCeEEEEECC-CCcE---EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 348 AGIVVVKDFV-TRAI---ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 348 dG~V~IwDl~-s~~~---i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
++.|.+||+. +++. ...+..+...+..|+|+++|+++++. ++ .|.+||.. | ..+.
T Consensus 192 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~-~v~~~~~~--------g----------~~~~ 250 (296)
T 3e5z_A 192 DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GD-GVHVLTPD--------G----------DELG 250 (296)
T ss_dssp TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TT-EEEEECTT--------S----------CEEE
T ss_pred CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CC-eEEEECCC--------C----------CEEE
Confidence 4567777775 4443 23333455567789999999988776 34 59999963 3 3444
Q ss_pred EEecccccccEEEEEE-ccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 424 KLHRGITSATIQDICF-SHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 424 ~l~rG~~~a~I~slaF-SpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
.+... .. +.+++| +||++.|.+++.++ ||.+++.
T Consensus 251 ~~~~~--~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~~ 285 (296)
T 3e5z_A 251 RVLTP--QT-TSNLCFGGPEGRTLYMTVSTE---FWSIETN 285 (296)
T ss_dssp EEECS--SC-CCEEEEESTTSCEEEEEETTE---EEEEECS
T ss_pred EEECC--CC-ceeEEEECCCCCEEEEEcCCe---EEEEEcc
Confidence 44422 23 788999 69999999999874 5555543
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.74 E-value=1.7e-05 Score=83.22 Aligned_cols=106 Identities=7% Similarity=0.023 Sum_probs=66.3
Q ss_pred CeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 75 KQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 75 ~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
+++++++..+ ++.+||.+ .+++..+.......+..+.+.|+ ..+++. ..+..
T Consensus 56 g~l~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~i~~~~d-------------g~l~v~-~~~~~------------ 108 (333)
T 2dg1_A 56 GQLFLLDVFEGNIFKINPE-TKEIKRPFVSHKANPAAIKIHKD-------------GRLFVC-YLGDF------------ 108 (333)
T ss_dssp SCEEEEETTTCEEEEECTT-TCCEEEEEECSSSSEEEEEECTT-------------SCEEEE-ECTTS------------
T ss_pred CCEEEEECCCCEEEEEeCC-CCcEEEEeeCCCCCcceEEECCC-------------CcEEEE-eCCCC------------
Confidence 5677777654 59999984 46666655445567888888764 125432 21110
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe---CCCCEEEEEecC--CeEEEEeC-------CeEEEEECCCC
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSP--RIVAVGLA-------TQIYCFDALTL 221 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~---~~s~V~sV~~s~--~~LaV~~~-------~~I~iwD~~t~ 221 (765)
...+.|.+||.++++....+. ....+.++.+++ +++++... ..|+.||..++
T Consensus 109 ----------------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~ 172 (333)
T 2dg1_A 109 ----------------KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR 172 (333)
T ss_dssp ----------------SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC
T ss_pred ----------------CCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCC
Confidence 012579999999887654443 124688999987 45554442 35888887665
Q ss_pred ce
Q 004255 222 EN 223 (765)
Q Consensus 222 ~~ 223 (765)
+.
T Consensus 173 ~~ 174 (333)
T 2dg1_A 173 TV 174 (333)
T ss_dssp CE
T ss_pred EE
Confidence 43
No 179
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.65 E-value=2.6e-05 Score=81.51 Aligned_cols=230 Identities=7% Similarity=-0.062 Sum_probs=149.9
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeecc-CCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcC
Q 004255 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRD-GPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (765)
Q Consensus 74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~d-g~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~ 151 (765)
.+++|++|..++ +++||.+ +|++.-.+..++ ..+..+.++|+. .+|+ +.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~-tG~~~w~~~~~~~~~~~~~~~~pdG-------------~ilv--s~------------- 54 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKD-TKEIVWEYPLEKGWECNSVAATKAG-------------EILF--SY------------- 54 (276)
T ss_dssp CCEEEEECTTCSEEEEEETT-TTEEEEEEECCTTCCCCEEEECTTS-------------CEEE--EC-------------
T ss_pred CCcEEEeeCCCCEEEEEECC-CCeEEEEeCCCccCCCcCeEECCCC-------------CEEE--eC-------------
Confidence 467888888776 8999984 577766666655 367888888742 2554 32
Q ss_pred CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CCEEEEEecC--CeEEEEeC--CeEEEEECCCCceeE
Q 004255 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP--RIVAVGLA--TQIYCFDALTLENKF 225 (765)
Q Consensus 152 ~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~--s~V~sV~~s~--~~LaV~~~--~~I~iwD~~t~~~l~ 225 (765)
.+.|..||. +|+.+..++.+ ..+.++.+.+ ++|++... .+|+.+|. +++.++
T Consensus 55 --------------------~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~ 112 (276)
T 3no2_A 55 --------------------SKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLS 112 (276)
T ss_dssp --------------------BSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEE
T ss_pred --------------------CCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEE
Confidence 147999999 89999999875 4677777665 67776554 46888886 777776
Q ss_pred EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhh
Q 004255 226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (765)
Q Consensus 226 tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~l 305 (765)
++.....- ..+ .. .++.++.. +.+..
T Consensus 113 ~~~~~~~~--~~~--------~~----~~~~v~~~---------------------------~~G~~------------- 138 (276)
T 3no2_A 113 KTEFETGI--ERP--------HA----QFRQINKN---------------------------KKGNY------------- 138 (276)
T ss_dssp EEEECCSC--SSG--------GG----SCSCCEEC---------------------------TTSCE-------------
T ss_pred EEeccCCC--Ccc--------cc----cccCceEC---------------------------CCCCE-------------
Confidence 65421100 000 00 00111100 00010
Q ss_pred hcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 004255 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV 385 (765)
Q Consensus 306 a~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLA 385 (765)
++....++.|.+||.. ++.+-++..+. ...++.+.++|.+|+
T Consensus 139 ------------------------------------lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v 180 (276)
T 3no2_A 139 ------------------------------------LVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLV 180 (276)
T ss_dssp ------------------------------------EEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEE
T ss_pred ------------------------------------EEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEE
Confidence 1122357899999998 99988887763 455678899999999
Q ss_pred EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc----ccccEEEEEEccCCCEEEEEeCC--------C
Q 004255 386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI----TSATIQDICFSHYSQWIAIVSSK--------G 453 (765)
Q Consensus 386 TaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~----~~a~I~slaFSpDg~~Las~S~d--------g 453 (765)
+++. ++.|..||..+ | ..++++.+.. .-..+..++..+||+.+++.+.. +
T Consensus 181 ~~~~-~~~v~~~d~~t-------G----------~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~ 242 (276)
T 3no2_A 181 ACGD-AHCFVQLNLES-------N----------RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGK 242 (276)
T ss_dssp ECBT-TSEEEEECTTT-------C----------CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSC
T ss_pred EeCC-CCeEEEEeCcC-------C----------cEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccC
Confidence 8877 45588898754 4 5777776421 12348899999999988887421 3
Q ss_pred cEEEEeCCCCC
Q 004255 454 TCHVFVLSPFG 464 (765)
Q Consensus 454 TVhIwdl~~~g 464 (765)
..+++++++.|
T Consensus 243 ~~~~~~~~~~g 253 (276)
T 3no2_A 243 HPQLVEIDSEG 253 (276)
T ss_dssp CCSEEEECTTS
T ss_pred CceEEEECCCC
Confidence 45788887644
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.63 E-value=1e-06 Score=101.95 Aligned_cols=97 Identities=13% Similarity=0.001 Sum_probs=58.1
Q ss_pred eEEEEECCCCcEEEEeccCCCC--------eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255 350 IVVVKDFVTRAIISQFKAHTSP--------ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (765)
Q Consensus 350 ~V~IwDl~s~~~i~~~~aH~~~--------IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~ 421 (765)
.|.+||+.+++....+..|... +..++|+|+|+++++++. ++ ++||.+... + ..
T Consensus 266 ~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~d~~------~----------~~ 327 (662)
T 3azo_A 266 NLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA-AVLGILDPE------S----------GE 327 (662)
T ss_dssp EEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS-CEEEEEETT------T----------TE
T ss_pred EEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc-cEEEEEECC------C----------Cc
Confidence 5666666666554433333222 567999999999999988 65 899954221 1 13
Q ss_pred EEEEecccccccEEEE-EEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255 422 LYKLHRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (765)
Q Consensus 422 l~~l~rG~~~a~I~sl-aFSpDg~~Las~S~dgTVhIwdl~~~gg~ 466 (765)
+..+..+ ...+.++ +++.+.-++++++.+....||.++..++.
T Consensus 328 ~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 328 LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 4444322 2346666 55544445556677777777776654443
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.59 E-value=1.3e-05 Score=94.24 Aligned_cols=97 Identities=10% Similarity=-0.029 Sum_probs=65.9
Q ss_pred CCeEEEEECCCCc--EEEEeccCCC--CeEEEEECCCCCEEEEEEcCCC-EEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 348 AGIVVVKDFVTRA--IISQFKAHTS--PISALCFDPSGTLLVTASVYGN-NINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 348 dG~V~IwDl~s~~--~i~~~~aH~~--~IsaLaFSpdG~lLATaS~dGt-~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
.+.|.+||+.++. ....+..|.. .|..++|++++.+++++..++. .|.+||+.. | ..+
T Consensus 310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-------g----------~~~ 372 (710)
T 2xdw_A 310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-------G----------ALL 372 (710)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-------C----------CEE
T ss_pred CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-------C----------CEE
Confidence 4578889988764 2345555544 6888999988889999988664 255666533 3 244
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEe----CCCcEEEEeCCCC
Q 004255 423 YKLHRGITSATIQDICFSHYSQWIAIVS----SKGTCHVFVLSPF 463 (765)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~Las~S----~dgTVhIwdl~~~ 463 (765)
..+... ...|..++|+||++.|+... ..+++.+||+...
T Consensus 373 ~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 373 KIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 455422 45688999999998766442 2468999998653
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.57 E-value=1.3e-05 Score=92.86 Aligned_cols=181 Identities=10% Similarity=-0.020 Sum_probs=121.5
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe-CCeEEEEECC--CCceeEEEEecCCcccCCCCcccccccc
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDAL--TLENKFSVLTYPVPQLAGQGAVGINVGY 247 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~--t~~~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (765)
++|.++|..+++.+.++.....+..+.+++ ++|.++. ++.|.+||+. +++.+.++.....
T Consensus 177 ~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~--------------- 241 (567)
T 1qks_A 177 GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE--------------- 241 (567)
T ss_dssp TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE---------------
T ss_pred CeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC---------------
Confidence 689999999999999998877888999987 6666655 4589999995 8877766653221
Q ss_pred ceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (765)
Q Consensus 248 ~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~ 327 (765)
|+.|++.... .|++.-+.
T Consensus 242 ------P~~ia~s~~~-----------------------~pDGk~l~--------------------------------- 259 (567)
T 1qks_A 242 ------ARSIETSKME-----------------------GWEDKYAI--------------------------------- 259 (567)
T ss_dssp ------EEEEEECCST-----------------------TCTTTEEE---------------------------------
T ss_pred ------CceeEEcccc-----------------------CCCCCEEE---------------------------------
Confidence 2333443100 00000000
Q ss_pred CccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc----------CCC-CeEEEEECCCCCEEEEEEcCCCEEEE
Q 004255 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA----------HTS-PISALCFDPSGTLLVTASVYGNNINI 396 (765)
Q Consensus 328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a----------H~~-~IsaLaFSpdG~lLATaS~dGt~IrV 396 (765)
+....+++|.|+|..+.+.+..+.. |.. .+.++.+++++..++..-.+...|.+
T Consensus 260 ---------------v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~ 324 (567)
T 1qks_A 260 ---------------AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL 324 (567)
T ss_dssp ---------------EEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred ---------------EEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence 0012356888999999988887652 222 58899999998877766666667999
Q ss_pred EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCC
Q 004255 397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF 463 (765)
Q Consensus 397 Wdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~ 463 (765)
+|..+. . ...+..+..| ....++.|+|||++|.++. .+++|.++|+.+.
T Consensus 325 vd~~~~------~---------~~~v~~i~~~---~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 325 VDYTDL------N---------NLKTTEISAE---RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EETTCS------S---------EEEEEEEECC---SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred EecCCC------c---------cceeeeeecc---ccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 997541 0 0122233222 2467899999999987665 5789999999864
No 183
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.57 E-value=6.3e-05 Score=87.07 Aligned_cols=235 Identities=13% Similarity=0.099 Sum_probs=141.1
Q ss_pred CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (765)
Q Consensus 75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~ 153 (765)
+.++++...++ +.|+|.+ ++++...+... ..+..+.+.|+. ..|.+ +++
T Consensus 167 ~~~~V~~~~~~~V~viD~~-t~~v~~~i~~g-~~p~~v~~SpDG-------------r~lyv-~~~-------------- 216 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGS-TYEIKTVLDTG-YAVHISRLSASG-------------RYLFV-IGR-------------- 216 (567)
T ss_dssp GEEEEEETTTTEEEEEETT-TCCEEEEEECS-SCEEEEEECTTS-------------CEEEE-EET--------------
T ss_pred ceEEEEeCCCCeEEEEECC-CCeEEEEEeCC-CCccceEECCCC-------------CEEEE-EcC--------------
Confidence 34555554444 9999995 56565555432 246688888752 25544 321
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECC--CCeEEEEEeCCCCEEEEEec----C--CeEEEEe--CCeEEEEECCCCce
Q 004255 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQ--SHCYEHVLRFRSSVCMVRCS----P--RIVAVGL--ATQIYCFDALTLEN 223 (765)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlk--tg~~v~tL~~~s~V~sV~~s----~--~~LaV~~--~~~I~iwD~~t~~~ 223 (765)
++.|.+||+. +++.+.++........++++ + ++|.++. .++|.+||..|++.
T Consensus 217 ------------------dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~ 278 (567)
T 1qks_A 217 ------------------DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP 278 (567)
T ss_dssp ------------------TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred ------------------CCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE
Confidence 2589999996 89999999876667888888 3 6777654 46899999999999
Q ss_pred eEEEEecCCcccCCCCccccccccceeEEcc--c--eEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehh
Q 004255 224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--R--WLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 299 (765)
Q Consensus 224 l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r--~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~ 299 (765)
+.++.+...+. ....+.| | .|+.+... ..+
T Consensus 279 ~~~i~~~~~~~-------------~~~~~~p~~rva~i~~s~~~---------------------------~~~------ 312 (567)
T 1qks_A 279 KKIQSTRGMTY-------------DEQEYHPEPRVAAILASHYR---------------------------PEF------ 312 (567)
T ss_dssp EEEEECCEECT-------------TTCCEESCCCEEEEEECSSS---------------------------SEE------
T ss_pred EEEEecccccc-------------ccccccCCCceEEEEEcCCC---------------------------CEE------
Confidence 88876422100 0000000 0 01111000 000
Q ss_pred hhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE--EEEeccCCCCeEEEEE
Q 004255 300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI--ISQFKAHTSPISALCF 377 (765)
Q Consensus 300 d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~--i~~~~aH~~~IsaLaF 377 (765)
......+|.|.++|..+.+. +..+. .......+.|
T Consensus 313 ------------------------------------------vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~ 349 (567)
T 1qks_A 313 ------------------------------------------IVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGL 349 (567)
T ss_dssp ------------------------------------------EEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEE
T ss_pred ------------------------------------------EEEecCCCeEEEEecCCCccceeeeee-ccccccCceE
Confidence 01123568899999876542 22332 2334667899
Q ss_pred CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-ccccccEEEEE-EccCCCEEEEEe--CCC
Q 004255 378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-GITSATIQDIC-FSHYSQWIAIVS--SKG 453 (765)
Q Consensus 378 SpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r-G~~~a~I~sla-FSpDg~~Las~S--~dg 453 (765)
+|||++|+++......|.|+|+.+ + ..+..+.- |.....-..+. |+||+..+.+.+ .++
T Consensus 350 ~pdgr~~~va~~~sn~V~ViD~~t-------~----------kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~ 412 (567)
T 1qks_A 350 DGSHRYFITAANARNKLVVIDTKE-------G----------KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDD 412 (567)
T ss_dssp CTTSCEEEEEEGGGTEEEEEETTT-------T----------EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSS
T ss_pred CCCCCEEEEEeCCCCeEEEEECCC-------C----------cEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCC
Confidence 999999988887677899999965 3 23333333 22111101122 688866655444 468
Q ss_pred cEEEEeCCCC
Q 004255 454 TCHVFVLSPF 463 (765)
Q Consensus 454 TVhIwdl~~~ 463 (765)
+|.|+|..+.
T Consensus 413 ~Vsvid~~~~ 422 (567)
T 1qks_A 413 SVALIGTDPE 422 (567)
T ss_dssp EEEEEECCTT
T ss_pred eEEEecCCCC
Confidence 9999999873
No 184
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.55 E-value=6.8e-05 Score=77.39 Aligned_cols=97 Identities=13% Similarity=0.146 Sum_probs=64.0
Q ss_pred CCeEEEEECC-CCc-----EEEEeccCC-CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255 348 AGIVVVKDFV-TRA-----IISQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (765)
Q Consensus 348 dG~V~IwDl~-s~~-----~i~~~~aH~-~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~ 420 (765)
++.|.+||+. +++ ....+..+. .....|+++++|+++++...++ .|.+||..+ | .
T Consensus 197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~-~i~~~d~~~-------g----------~ 258 (314)
T 1pjx_A 197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS-HIEVFGPDG-------G----------Q 258 (314)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT-EEEEECTTC-------B----------S
T ss_pred CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC-EEEEEcCCC-------C----------c
Confidence 4566777765 333 333445554 5678899999999998877644 599999743 2 1
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCC
Q 004255 421 HLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFG 464 (765)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~Las~-S~dgTVhIwdl~~~g 464 (765)
.+..+.. ....+.+++|++||++|.++ ..++.|..|++...|
T Consensus 259 ~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 259 PKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp CSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 1222221 12458999999999966555 456889999987644
No 185
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.53 E-value=1.8e-05 Score=81.15 Aligned_cols=93 Identities=9% Similarity=0.141 Sum_probs=66.5
Q ss_pred CCeEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255 348 AGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~--aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l 425 (765)
++.|.+||.. ++.+..+. ++...+..|+|+|+|+++++.+. +..|++||.. | ..+..+
T Consensus 141 ~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-~~~i~~~~~~--------g----------~~~~~~ 200 (286)
T 1q7f_A 141 VMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR-AHCVKVFNYE--------G----------QYLRQI 200 (286)
T ss_dssp TTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG-GTEEEEEETT--------C----------CEEEEE
T ss_pred CCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC-CCEEEEEcCC--------C----------CEEEEE
Confidence 4678888854 55555554 45567899999999998887766 4469999963 2 244444
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCC-cEEEEeC
Q 004255 426 HRGITSATIQDICFSHYSQWIAIVSSKG-TCHVFVL 460 (765)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~Las~S~dg-TVhIwdl 460 (765)
........+..|+|++||+++++...++ +|.+|+.
T Consensus 201 ~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 201 GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred ccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence 2110113588999999999888888886 9999984
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.49 E-value=7.1e-05 Score=78.38 Aligned_cols=99 Identities=11% Similarity=0.070 Sum_probs=60.4
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE-E-Ee
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY-K-LH 426 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~-~-l~ 426 (765)
+.|..+|..+++... +..+...+..++|+|||+.|..+...+..|.+||+... |. ....+. . +.
T Consensus 162 ~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~------g~-------~~~~~~~~~~~ 227 (333)
T 2dg1_A 162 GGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD------GV-------TIQPFGATIPY 227 (333)
T ss_dssp EEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT------SS-------SEEEEEEEEEE
T ss_pred ceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC------Cc-------CcccccceEEE
Confidence 456666665544332 22333457899999999966555443456999998431 20 001110 0 10
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
.......+..++|++||+++++...++.|.+|+.+
T Consensus 228 ~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 228 YFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp ECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 00001357889999999988888888999999863
No 187
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.47 E-value=5.6e-06 Score=91.52 Aligned_cols=80 Identities=9% Similarity=0.107 Sum_probs=58.5
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE--EE
Q 004255 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH--LY 423 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~--l~ 423 (765)
..||.|.+||+.++.... +...|+|++|||+| ++.+..||+ |++|+... + .. ..
T Consensus 143 ~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~-i~~~~~~~-------~----------~~~~k~ 198 (388)
T 1xip_A 143 NSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS-FQSFAWRN-------G----------EMEKQF 198 (388)
T ss_dssp ETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC-EEEEEEET-------T----------EEEEEE
T ss_pred ECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc-EEEEcCCC-------c----------cccccc
Confidence 468999999999887643 45689999999999 667778676 99997632 1 11 33
Q ss_pred EEec----c---cccccEEEEEEccCCCEEEEE
Q 004255 424 KLHR----G---ITSATIQDICFSHYSQWIAIV 449 (765)
Q Consensus 424 ~l~r----G---~~~a~I~slaFSpDg~~Las~ 449 (765)
++-+ + .+...|.+|.|.++++||++=
T Consensus 199 ~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 199 EFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred eecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 3411 1 123579999999999999874
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.44 E-value=1.2e-05 Score=84.16 Aligned_cols=172 Identities=9% Similarity=0.061 Sum_probs=111.8
Q ss_pred CCEEEEEECCCCeEEEEEeCCC--CEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 004255 172 PTAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~s--~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (765)
++.|.+||.++|+.+.++..+. .+.++.+.+ ++|+ +..+.|++||. +++.++++...... ..
T Consensus 14 ~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~------------~~ 79 (276)
T 3no2_A 14 WNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGC------------EM 79 (276)
T ss_dssp CSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTC------------EE
T ss_pred CCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCc------------cc
Confidence 3689999999999999998764 678888876 5666 66778999999 89998887752110 00
Q ss_pred ceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (765)
Q Consensus 248 ~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~ 327 (765)
..+++.+ ++..+++
T Consensus 80 ~~~~~~~----------------------------------dG~~lv~-------------------------------- 93 (276)
T 3no2_A 80 QTARILP----------------------------------DGNALVA-------------------------------- 93 (276)
T ss_dssp EEEEECT----------------------------------TSCEEEE--------------------------------
T ss_pred cccEECC----------------------------------CCCEEEE--------------------------------
Confidence 1112211 1111110
Q ss_pred CccCCCccccccccccccCCCCeEEEEECCCCcEEEEec------cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK------AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (765)
Q Consensus 328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~------aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~ 401 (765)
.....+.|..+|. +++.+.++. .+..+...+++.++|++|++.+.++ .|.+||..
T Consensus 94 ----------------~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~-~v~~~d~~- 154 (276)
T 3no2_A 94 ----------------WCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS-EVREIAPN- 154 (276)
T ss_dssp ----------------EESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT-EEEEECTT-
T ss_pred ----------------ecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC-EEEEECCC-
Confidence 0001233334443 344333332 2223455678899999999988755 59999963
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 402 ~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
| ..++++..+ ....++.+.++|+.|++++.++.|..||..+
T Consensus 155 -------G----------~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t 195 (276)
T 3no2_A 155 -------G----------QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLES 195 (276)
T ss_dssp -------S----------CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTT
T ss_pred -------C----------CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcC
Confidence 4 577887654 2356788999999999999888888887654
No 189
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.40 E-value=3.7e-05 Score=83.21 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=46.2
Q ss_pred CCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe-----------CCeEEEEECCCCceeEEEEec
Q 004255 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLTY 230 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~-----------~~~I~iwD~~t~~~l~tl~t~ 230 (765)
+++|.+||..+++.+.++.....- .|++++ ++|.++. ++.|.+||+.+++.+.++...
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~ 100 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLP 100 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEEC
T ss_pred cCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcC
Confidence 368999999999999988765434 888887 6777764 346999999999988888653
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.39 E-value=2.1e-05 Score=92.55 Aligned_cols=99 Identities=4% Similarity=-0.099 Sum_probs=65.0
Q ss_pred CCeEEEEECCC------Cc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCC---EEEEEeCCCCcccCCCCCCccccCC
Q 004255 348 AGIVVVKDFVT------RA-IISQFKAHTSPISALCFDPSGTLLVTASVYGN---NINIFRIMPSCMRSGSGNHKYDWNS 417 (765)
Q Consensus 348 dG~V~IwDl~s------~~-~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt---~IrVWdi~~~~~~~~sG~~~~~~~~ 417 (765)
+..|.+||+.+ +. ....+..|...+.. .|+|+|..|+..+.++. .|.+||+.. +.
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~-------~~------- 322 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTD-------PE------- 322 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTS-------CC-------
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCC-------CC-------
Confidence 45788888876 43 45667777776665 58999998887776443 588888743 10
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 418 s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
......+..+.....|.+++|++++.++++...++..+||-++.
T Consensus 323 -~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 323 -ESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp -GGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred -cccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence 00112333222223688999998888889999999776665543
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.37 E-value=5.8e-05 Score=76.23 Aligned_cols=95 Identities=9% Similarity=-0.056 Sum_probs=66.4
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
++.|.+||............+...+..|+++++|.++++...++ .|.+||.... ....+..
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~-~v~~~~~~~~------------------~~~~~~~ 230 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTN-QVVKLLAGST------------------TSTVLPF 230 (270)
T ss_dssp GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTS-CEEEECTTCS------------------CCEECCC
T ss_pred CCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCC-cEEEEcCCCC------------------cceeecc
Confidence 35778888776655443334446788999999998887766544 5899997421 1111111
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
+ ....+.+|+|++||+.+++.+.+++|++|++..
T Consensus 231 ~-~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 231 T-GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp C-SCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred C-CCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 1 113588999999999888989999999999875
No 192
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.36 E-value=0.00011 Score=77.71 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=44.2
Q ss_pred CCCeEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 004255 347 NAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~---~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~ 400 (765)
.+..|.+||+.+++.+..+ .+|......|+|+|+|.++++.+.++ .|++|++.
T Consensus 266 ~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~-~I~~~~~~ 321 (329)
T 3fvz_A 266 EPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN-TVWKFTLT 321 (329)
T ss_dssp CCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC-CEEEEEEE
T ss_pred CCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC-EEEEEeCC
Confidence 4568999999999999888 47778899999999998888777655 59999973
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.29 E-value=0.00015 Score=79.16 Aligned_cols=81 Identities=14% Similarity=-0.038 Sum_probs=54.6
Q ss_pred EEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe-----------CCeEEEEECCCCceeEEEEecCCcccCCCCc
Q 004255 174 AVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLTYPVPQLAGQGA 240 (765)
Q Consensus 174 tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~-----------~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~ 240 (765)
+|.+||..+++.+.++.....- .+.+++ +.|.++. ++.|.+||+.+++...++.....+.. .
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~--~-- 122 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF--D-- 122 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc--c--
Confidence 8999999999999888754333 888887 6777764 45799999999998887764201000 0
Q ss_pred cccccccceeEEcc--ceEEEec
Q 004255 241 VGINVGYGPMAVGP--RWLAYAS 261 (765)
Q Consensus 241 ~~~~~~~~~~Alsp--r~LAyas 261 (765)
.+ . ...-++++| ++|..+.
T Consensus 123 ~g-~-~p~~~~~spDG~~l~v~n 143 (373)
T 2mad_H 123 VG-P-YSWMNANTPNNADLLFFQ 143 (373)
T ss_pred cC-C-CccceEECCCCCEEEEEe
Confidence 00 0 012478888 7777664
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.28 E-value=0.00041 Score=71.54 Aligned_cols=92 Identities=16% Similarity=0.102 Sum_probs=59.5
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc-eEEEEEec
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH-VHLYKLHR 427 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~-~~l~~l~r 427 (765)
+.|..+|.. ++ +..+..+......++|+|||++|++.+. +..|.+||+... |. . .....+ .
T Consensus 153 ~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~-~~~i~~~~~~~~------g~--------~~~~~~~~-~ 214 (296)
T 3e5z_A 153 RWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTG-DNATHRYCLNAR------GE--------TEYQGVHF-T 214 (296)
T ss_dssp CEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETT-TTEEEEEEECSS------SC--------EEEEEEEE-C
T ss_pred cEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCC-CCeEEEEEECCC------Cc--------CcCCCeEe-e
Confidence 455556655 43 3445566667889999999999955554 557999998521 21 0 011222 1
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
. ....+.+|+|++||++.++. ++.|.+|+.+
T Consensus 215 ~-~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 215 V-EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp C-SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred C-CCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 1 22346789999999876665 7889999864
No 195
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.20 E-value=0.00047 Score=77.30 Aligned_cols=81 Identities=12% Similarity=0.047 Sum_probs=55.9
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc---------c---ccEEEEE
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT---------S---ATIQDIC 438 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~---------~---a~I~sla 438 (765)
....|.+||||++|..+......|.+||+... + ..+.+..+.-|-. . ..-+.++
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~------~--------~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~ 387 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNP------F--------KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLE 387 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTTTEEEEEECSST------T--------SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEE
T ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEEecCC------C--------CcEEEEEEEeCCeeccccccccccCCCCCCEEE
Confidence 46789999999999998887778999998531 1 1134444443311 0 0136799
Q ss_pred EccCCCEEEEEe------------CCCcEEEE--eCCCCCC
Q 004255 439 FSHYSQWIAIVS------------SKGTCHVF--VLSPFGG 465 (765)
Q Consensus 439 FSpDg~~Las~S------------~dgTVhIw--dl~~~gg 465 (765)
+||||++|.++. .+..+.++ ++++.+|
T Consensus 388 lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G 428 (462)
T 2ece_A 388 ISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG 428 (462)
T ss_dssp ECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC
T ss_pred EcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC
Confidence 999999999998 33345555 7788777
No 196
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.19 E-value=0.0013 Score=68.46 Aligned_cols=84 Identities=15% Similarity=0.246 Sum_probs=55.3
Q ss_pred CeEEEEEC--CCCc-----EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255 349 GIVVVKDF--VTRA-----IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (765)
Q Consensus 349 G~V~IwDl--~s~~-----~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~ 421 (765)
+.|.+||+ .++. ....+..+......|+++++|++.++... +..|.+||..+ | +.
T Consensus 171 ~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-~~~v~~~d~~t-------G----------~~ 232 (297)
T 3g4e_A 171 YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-GGRVIRLDPVT-------G----------KR 232 (297)
T ss_dssp TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET-TTEEEEECTTT-------C----------CE
T ss_pred CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC-CCEEEEEcCCC-------c----------eE
Confidence 45555654 2332 23334444456788999999998877766 55689999753 3 34
Q ss_pred EEEEecccccccEEEEEEc-cCCCEEEEEeCC
Q 004255 422 LYKLHRGITSATIQDICFS-HYSQWIAIVSSK 452 (765)
Q Consensus 422 l~~l~rG~~~a~I~slaFS-pDg~~Las~S~d 452 (765)
+..+.-. ...+++++|+ ||++.|.+++..
T Consensus 233 ~~~i~~p--~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 233 LQTVKLP--VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEEECS--SSBEEEEEEESGGGCEEEEEEBC
T ss_pred EEEEECC--CCCceEEEEeCCCCCEEEEEcCC
Confidence 5555422 2358999999 999988777754
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.19 E-value=0.00066 Score=74.88 Aligned_cols=100 Identities=10% Similarity=0.093 Sum_probs=67.5
Q ss_pred CCCCeEEEEECCCCc--EEEEec---------c-CCCCeEEEEECCCCCEEEEEEcC---------CCEEEEEeCCCCcc
Q 004255 346 DNAGIVVVKDFVTRA--IISQFK---------A-HTSPISALCFDPSGTLLVTASVY---------GNNINIFRIMPSCM 404 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~--~i~~~~---------a-H~~~IsaLaFSpdG~lLATaS~d---------Gt~IrVWdi~~~~~ 404 (765)
..+|.|.+.|+.++. .+..+. + +...+..++++|++..|..+..+ ++.|-|+|+.+
T Consensus 244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t--- 320 (386)
T 3sjl_D 244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT--- 320 (386)
T ss_dssp BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT---
T ss_pred eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC---
Confidence 346899999997654 333222 0 12234458889999998877531 35688889866
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEE-eCCCcEEEEeCCCCCC
Q 004255 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIV-SSKGTCHVFVLSPFGG 465 (765)
Q Consensus 405 ~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~Las~-S~dgTVhIwdl~~~gg 465 (765)
+ +.+.++.-| ..+++|+||+|++ +|.++ ..+++|.|+|..+..-
T Consensus 321 ----~----------kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 321 ----G----------ERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp ----C----------CEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred ----C----------eEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 2 355555433 2578999999997 66665 4589999999987543
No 198
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.16 E-value=0.0006 Score=76.18 Aligned_cols=116 Identities=9% Similarity=-0.028 Sum_probs=73.5
Q ss_pred CeEEEEEec-----CcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCC
Q 004255 75 KQVLLLGYQ-----NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQN 149 (765)
Q Consensus 75 ~~vL~~G~~-----~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~ 149 (765)
+++.++... +.+.|+|.. +.++...+.-...| .+.+.|+. ..|.+...... .
T Consensus 85 ~~vyV~n~~~~~~~~~VsVID~~-t~~vv~~I~vG~~P--gia~SpDg-------------k~lyVan~~~~-~------ 141 (426)
T 3c75_H 85 RRVYIQDPAHFAAITQQFVIDGS-TGRILGMTDGGFLP--HPVAAEDG-------------SFFAQASTVFE-R------ 141 (426)
T ss_dssp TEEEEEECTTTCSSEEEEEEETT-TTEEEEEEEECSSC--EEEECTTS-------------SCEEEEEEEEE-E------
T ss_pred CEEEEECCCcCCCCCeEEEEECC-CCEEEEEEECCCCC--ceEECCCC-------------CEEEEEecccc-c------
Confidence 455655553 359999985 56666666555566 67888752 13443221000 0
Q ss_pred cCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--------CCEEEEEecC--CeEEEEe---CCeEEEE
Q 004255 150 RSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--------SSVCMVRCSP--RIVAVGL---ATQIYCF 216 (765)
Q Consensus 150 ~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~--------s~V~sV~~s~--~~LaV~~---~~~I~iw 216 (765)
...|. ..+.|.++|..+++.+.++... .....+.+++ ++|.|+. .+.|.++
T Consensus 142 ------~~~G~----------~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVI 205 (426)
T 3c75_H 142 ------IARGK----------RTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVV 205 (426)
T ss_dssp ------TTEEE----------EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEE
T ss_pred ------cccCC----------CCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEE
Confidence 00000 0248999999999999998764 2345677776 7777764 3579999
Q ss_pred ECCCCceeEEEEe
Q 004255 217 DALTLENKFSVLT 229 (765)
Q Consensus 217 D~~t~~~l~tl~t 229 (765)
|+.+++.+.++..
T Consensus 206 D~~t~kvv~~I~v 218 (426)
T 3c75_H 206 DLEGKTFDRMLDV 218 (426)
T ss_dssp ETTTTEEEEEEEC
T ss_pred ECCCCeEEEEEEc
Confidence 9999998877753
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.16 E-value=0.0002 Score=84.84 Aligned_cols=96 Identities=5% Similarity=-0.048 Sum_probs=63.0
Q ss_pred CCeEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255 348 AGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (765)
Q Consensus 348 dG~V~IwDl~s~--~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l 425 (765)
.+.|.+||+.++ +....+..+...+..++|+ ++.++++...+| ..+||.+... | ..+..+
T Consensus 340 ~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg-~~~l~~~~~~------g----------~~~~~l 401 (741)
T 1yr2_A 340 LKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDA-KSQVLAFDLD------G----------KPAGAV 401 (741)
T ss_dssp TCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETT-EEEEEEEETT------S----------CEEEEC
T ss_pred CCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECC-EEEEEEEeCC------C----------Cceeec
Confidence 467889998874 3444455566667778887 677888888865 4777765321 2 234444
Q ss_pred ecccccccEEEEEEccCCCEEEEEe----CCCcEEEEeCCC
Q 004255 426 HRGITSATIQDICFSHYSQWIAIVS----SKGTCHVFVLSP 462 (765)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~Las~S----~dgTVhIwdl~~ 462 (765)
.. .....|..++|+||++.|+... ..+++.+||+..
T Consensus 402 ~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 402 SL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp BC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred cC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 31 1234688999999998766332 347899999864
No 200
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.14 E-value=0.0036 Score=66.21 Aligned_cols=68 Identities=9% Similarity=0.103 Sum_probs=45.5
Q ss_pred eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc-cCC
Q 004255 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS-HYS 443 (765)
Q Consensus 365 ~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS-pDg 443 (765)
+..+......++++++|.+.++... +..|.+||.. | ..+..+.- ....+++++|+ +|+
T Consensus 225 ~~~~~~~p~gi~~d~~G~lwva~~~-~~~v~~~d~~--------g----------~~~~~i~~--~~~~~~~~af~g~d~ 283 (326)
T 2ghs_A 225 STGIKGGMDGSVCDAEGHIWNARWG-EGAVDRYDTD--------G----------NHIARYEV--PGKQTTCPAFIGPDA 283 (326)
T ss_dssp CTTSSSEEEEEEECTTSCEEEEEET-TTEEEEECTT--------C----------CEEEEEEC--SCSBEEEEEEESTTS
T ss_pred CCCCCCCCCeeEECCCCCEEEEEeC-CCEEEEECCC--------C----------CEEEEEEC--CCCCcEEEEEecCCC
Confidence 3334445678999999998877655 3458889862 3 23444432 22359999998 999
Q ss_pred CEEEEEeCCC
Q 004255 444 QWIAIVSSKG 453 (765)
Q Consensus 444 ~~Las~S~dg 453 (765)
+.|.+++.++
T Consensus 284 ~~L~vt~~~~ 293 (326)
T 2ghs_A 284 SRLLVTSARE 293 (326)
T ss_dssp CEEEEEEBCT
T ss_pred CEEEEEecCC
Confidence 8887666544
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.11 E-value=0.00015 Score=85.00 Aligned_cols=98 Identities=9% Similarity=-0.083 Sum_probs=59.5
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC--CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d--Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
.|.+||..+++ ...|..|...+....+ ++|.++++...+ ...|.+||+.. +. ......+..
T Consensus 253 ~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~-------~~--------~~~~~~l~~ 315 (695)
T 2bkl_A 253 DVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAK-------PA--------RASWKEIVP 315 (695)
T ss_dssp EEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTB-------CS--------GGGCEEEEC
T ss_pred EEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCC-------CC--------ccCCeEEec
Confidence 46666665544 3445556566666666 566655544422 35688899743 10 001122322
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
+.....|.+++|+ +++.+++...|++.+||.++..++
T Consensus 316 ~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 316 EDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK 352 (695)
T ss_dssp CCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 2223458889998 778899999999999998775443
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.11 E-value=0.01 Score=59.96 Aligned_cols=92 Identities=11% Similarity=0.031 Sum_probs=61.7
Q ss_pred CCeEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 348 AGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~-~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
.+.|.+||. +++.... +..+...+..|+++++|+++++... +..|.+||. . +. ...+.+.
T Consensus 161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~~~-~-------g~---------~~~~~~~ 221 (299)
T 2z2n_A 161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII-GNKIGRITT-S-------GE---------ITEFKIP 221 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT-T-------CC---------EEEEECS
T ss_pred CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC-CceEEEECC-C-------Cc---------EEEEECC
Confidence 356777777 5554332 3344556889999999998776655 446899987 3 31 1222222
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl 460 (765)
.....+.+|++++||+..++...++.|.+|+.
T Consensus 222 --~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 222 --TPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp --STTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred --CCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 12245899999999997776667889999987
No 203
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.06 E-value=5.1e-05 Score=83.85 Aligned_cols=89 Identities=9% Similarity=0.100 Sum_probs=69.9
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
.+|.|++||+.+......+..|..+|..+.+.+.. +|.++.+| .+.+||+.. + ... .+.
T Consensus 104 ~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG-~L~v~dl~~-------~----------~~~-~~~ 162 (388)
T 1xip_A 104 TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVN-DLSALDLRT-------K----------STK-QLA 162 (388)
T ss_dssp ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTS-EEEEEETTT-------C----------CEE-EEE
T ss_pred cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCC-CEEEEEccC-------C----------ccc-ccc
Confidence 46899999998877777788888999998887653 88888866 599999964 2 122 222
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
..|.|++|||+| ++.+..||++++|+....
T Consensus 163 -----~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~ 192 (388)
T 1xip_A 163 -----QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNG 192 (388)
T ss_dssp -----ESEEEEEECSSE--EEEEETTSCEEEEEEETT
T ss_pred -----CCceEEEEcCCc--eEEEEcCCcEEEEcCCCc
Confidence 259999999999 788999999999977643
No 204
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.05 E-value=0.0019 Score=71.26 Aligned_cols=73 Identities=12% Similarity=0.209 Sum_probs=50.5
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-----cc--------ccccEEEE
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-----GI--------TSATIQDI 437 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r-----G~--------~~a~I~sl 437 (765)
....|+|+|+|+++++-+..++.|++||+.. | .+..+.. |. .-.....|
T Consensus 324 ~P~gia~d~dG~lyvad~~~~~~I~~~~~~~-------G-----------~v~~~~g~~~~~g~~~g~~~~~~~~~P~gi 385 (409)
T 3hrp_A 324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILD-------G-----------YVSTVAGQVDVASQIDGTPLEATFNYPYDI 385 (409)
T ss_dssp SEEEEEECTTCCEEEEETTTTCEEEEEETTT-------T-----------EEEEEEECTTCBSCCCBSTTTCCBSSEEEE
T ss_pred CCeEEEEeCCCCEEEEeCCCCCEEEEEECCC-------C-----------EEEEEeCCCCCCCcCCCChhceEeCCceEE
Confidence 4678999999997766550467799999643 3 2222211 00 01247899
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCC
Q 004255 438 CFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 438 aFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
++++||+.+++-..++.|+.++++
T Consensus 386 avd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 386 CYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EECSSSEEEEEESTTCEEEEEEEC
T ss_pred EEcCCCCEEEEECCCCeEEEEEeC
Confidence 999999888888889999888763
No 205
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.05 E-value=0.0002 Score=84.07 Aligned_cols=96 Identities=8% Similarity=-0.095 Sum_probs=63.9
Q ss_pred CCeEEEEECCCCcE---EEEeccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 348 AGIVVVKDFVTRAI---ISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 348 dG~V~IwDl~s~~~---i~~~~aH-~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
++.|.+||+.+++. ...+..+ ...|..++|+ ++.++++...++ ..+||.+... | ..+.
T Consensus 294 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg-~~~l~~~~~~------g----------~~~~ 355 (695)
T 2bkl_A 294 RQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDA-TSEVRVATLK------G----------KPVR 355 (695)
T ss_dssp TCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETT-EEEEEEEETT------C----------CEEE
T ss_pred CCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECC-EEEEEEEeCC------C----------CeeE
Confidence 57889999887653 3333333 4568889998 778888888865 5788876321 2 2333
Q ss_pred EEecccccccEEEEEEccCCCEEEEEe----CCCcEEEEeCCC
Q 004255 424 KLHRGITSATIQDICFSHYSQWIAIVS----SKGTCHVFVLSP 462 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~Las~S----~dgTVhIwdl~~ 462 (765)
.+. ......|..++|+||++.|+... ..++|.+||+..
T Consensus 356 ~l~-~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 356 TVQ-LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp ECC-CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred Eec-CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 432 11234578899999998777433 347899999875
No 206
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.92 E-value=0.00037 Score=74.35 Aligned_cols=57 Identities=9% Similarity=-0.038 Sum_probs=42.1
Q ss_pred CEEEEEECCCCeEEEEEeCCC-------CEEEEEecC--CeEEEE-----eCCeEEEEECCCCceeEEEEe
Q 004255 173 TAVRFYSFQSHCYEHVLRFRS-------SVCMVRCSP--RIVAVG-----LATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s-------~V~sV~~s~--~~LaV~-----~~~~I~iwD~~t~~~l~tl~t 229 (765)
.+|.+||+++++.++++.++. .+..|++++ ..+.++ ....|++||+.+++....+..
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~ 163 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQG 163 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence 589999999999999988752 357888874 455554 345799999998876555433
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.90 E-value=0.0014 Score=77.59 Aligned_cols=98 Identities=11% Similarity=0.088 Sum_probs=63.9
Q ss_pred CeEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCC---CEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 349 GIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 349 G~V~IwDl~s~--~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG---t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
..|.+||+.++ ++...|..+...+.... +|+|..|+..+.++ ..|.+||+.. + . ....
T Consensus 294 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~-------~--------~-~~~~ 356 (741)
T 1yr2_A 294 NTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG-------S--------T-PRFD 356 (741)
T ss_dssp CEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS-------S--------S-CEEE
T ss_pred ceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC-------C--------c-cccE
Confidence 47889998876 31455666665555553 49999998887643 2478888743 1 0 0222
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
.+..+ ....+.+++|+ ++..+++...|++.+||.++..++
T Consensus 357 ~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 396 (741)
T 1yr2_A 357 TVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK 396 (741)
T ss_dssp EEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred EEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 33322 22357788888 667888889999999998765343
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.83 E-value=0.005 Score=63.96 Aligned_cols=50 Identities=8% Similarity=-0.000 Sum_probs=40.1
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEEEEEecC-CeEEEEeCCeEEEEECCCCce
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-RIVAVGLATQIYCFDALTLEN 223 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~-~~LaV~~~~~I~iwD~~t~~~ 223 (765)
++|..||..+++. ..+.+...+.++++++ ..|.++..+.|++||..+++.
T Consensus 35 ~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 35 KKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSA 85 (297)
T ss_dssp TEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEE
T ss_pred CEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcE
Confidence 5899999998875 5667788899999987 336666678999999988764
No 209
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.81 E-value=0.0012 Score=72.38 Aligned_cols=54 Identities=9% Similarity=-0.119 Sum_probs=44.9
Q ss_pred EEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEe-----------CCeEEEEECCCCceeEEEEe
Q 004255 174 AVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 174 tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~-----------~~~I~iwD~~t~~~l~tl~t 229 (765)
+|.++|..+++.+.++... .+ .+.+++ +.|.|+. ++.|.+||+.|++...++..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v 114 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL 114 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence 8999999999999999743 45 688887 6777764 45799999999999999874
No 210
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.76 E-value=0.045 Score=55.14 Aligned_cols=92 Identities=14% Similarity=0.079 Sum_probs=57.6
Q ss_pred CCeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 348 AGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~-~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
.+.|.+||. +++... .+..+...+.+|+++++|+++++... +..|.+||. . |. ...+.+.
T Consensus 203 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~d~-~-------g~---------~~~~~~~ 263 (299)
T 2z2n_A 203 GNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG-ANKIGRLTS-N-------NI---------IEEYPIQ 263 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT-TTEEEEEET-T-------TE---------EEEEECS
T ss_pred CceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC-CceEEEECC-C-------Cc---------eEEEeCC
Confidence 456777777 555332 23345567899999999997776645 345899996 2 20 1222222
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
. ....+.++++ ++|++.++.+ .+.+..|+...
T Consensus 264 ~--~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 264 I--KSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp S--SSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred C--CCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 1 1245899999 9998776655 55666666653
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.70 E-value=0.005 Score=72.33 Aligned_cols=94 Identities=7% Similarity=-0.009 Sum_probs=63.8
Q ss_pred CCeEEEEECCCCcE--EEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 348 AGIVVVKDFVTRAI--ISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 348 dG~V~IwDl~s~~~--i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt--~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
.+.|.++|+.++.. ...|..|...+. .|+++|..|+....++. .|++||+.. ....
T Consensus 304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g------------------~~~~ 363 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG------------------KRVR 363 (693)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS------------------CEEE
T ss_pred CCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC------------------CeeE
Confidence 45788888887653 345667766665 89999998887776553 478888742 1333
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCC----CcEEEEeCCC
Q 004255 424 KLHRGITSATIQDICFSHYSQWIAIVSSK----GTCHVFVLSP 462 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~Las~S~d----gTVhIwdl~~ 462 (765)
.+.-. ....+..+++++|++.|+....+ +++..||+..
T Consensus 364 ~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 364 EVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp EECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred EeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence 44321 12357788899999877766555 7888888764
No 212
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.61 E-value=0.0017 Score=65.21 Aligned_cols=95 Identities=11% Similarity=-0.006 Sum_probs=61.0
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
++.|.+||..+.........+...+..|+++++|+++++... +..|.+||... + .......
T Consensus 128 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-~~~i~~~~~~~-------~-----------~~~~~~~ 188 (270)
T 1rwi_B 128 NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD-NNRVVKLEAES-------N-----------NQVVLPF 188 (270)
T ss_dssp GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG-GTEEEEECTTT-------C-----------CEEECCC
T ss_pred CCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC-CCEEEEEecCC-------C-----------ceEeecc
Confidence 345666665544332222233345788999999998777665 44699999743 1 1111111
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
. ....+.+|++++||+.+++...++.|.+|+...
T Consensus 189 ~-~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 189 T-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp S-SCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred c-CCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 1 113588999999998888777888999998653
No 213
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.61 E-value=0.0062 Score=71.70 Aligned_cols=53 Identities=2% Similarity=-0.030 Sum_probs=38.4
Q ss_pred CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255 392 NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (765)
Q Consensus 392 t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g 464 (765)
..|..||+.+ | +.++++.-+ ..+++..++.++..+++++.||++++||+.+..
T Consensus 457 g~l~A~D~~t-------G----------~~~W~~~~~---~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 457 GRLLAWDPVA-------Q----------KAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp EEEEEEETTT-------T----------EEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cEEEEEeCCC-------C----------cEEeecCCC---CCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 3477788755 3 466666533 234556688889999999999999999998643
No 214
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.59 E-value=1.8e-05 Score=86.02 Aligned_cols=91 Identities=12% Similarity=-0.004 Sum_probs=46.5
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l 425 (765)
..+|.|..||..+|+.+-.+..+. ...++|++..|++++.++ .|+.||..+ | ..++++
T Consensus 99 ~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg-~v~a~d~~t-------G----------~~~W~~ 156 (369)
T 2hz6_A 99 KKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEY-TITMYDTKT-------R----------ELRWNA 156 (369)
T ss_dssp EEEEEEEEECCC--------------------------EEEEEEEE-EEECCCSSS-------S----------SCCCEE
T ss_pred eCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCC-EEEEEECCC-------C----------CEEEeE
Confidence 357889999999999888877664 245677888999988855 599999865 3 233333
Q ss_pred ecccccccEEEEEEccCC---CEEEEEeCCCcEEEEeCCC
Q 004255 426 HRGITSATIQDICFSHYS---QWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 426 ~rG~~~a~I~slaFSpDg---~~Las~S~dgTVhIwdl~~ 462 (765)
..+. ....+++.|. ..+++++.||.++.||..+
T Consensus 157 ~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 157 TYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp EEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred eccc----ccCccccCCccccceEEEECCCCEEEEEECCC
Confidence 2111 1223445543 5677789999999999875
No 215
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.59 E-value=0.079 Score=53.35 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=58.6
Q ss_pred CeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 349 GIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 349 G~V~IwDl~s~~~i~-~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
+.|.++|. +++... .+..+...+..|+++++|++.++... +..|.+||. . |. ...+.+..
T Consensus 167 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~-~-------g~---------~~~~~~~~ 227 (300)
T 2qc5_A 167 NSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM-GNKIGRITT-T-------GE---------ISEYDIPT 227 (300)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT-T-------CC---------EEEEECSS
T ss_pred CeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC-CCEEEEEcC-C-------Cc---------EEEEECCC
Confidence 45666666 444322 12234456889999999988776554 446888986 2 21 12222211
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl 460 (765)
....+.+|+++++|+..++...++.|.+|+.
T Consensus 228 --~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 228 --PNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp --TTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred --CCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 1235889999999997766666788999886
No 216
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.52 E-value=0.0092 Score=66.90 Aligned_cols=100 Identities=11% Similarity=0.183 Sum_probs=70.9
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCC--e-EEEEECCCCCEEEEEE------------------cCCCEEEEEeCCCCcc
Q 004255 346 DNAGIVVVKDFVTRAIISQFKAHTSP--I-SALCFDPSGTLLVTAS------------------VYGNNINIFRIMPSCM 404 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~~i~~~~aH~~~--I-saLaFSpdG~lLATaS------------------~dGt~IrVWdi~~~~~ 404 (765)
...|.|.+.|..+.+++.++..-..+ + ..+-|+|+++.|+|+. ..+..|.+||+..
T Consensus 161 ~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~--- 237 (462)
T 2ece_A 161 EGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK--- 237 (462)
T ss_dssp CSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT---
T ss_pred CCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC---
Confidence 34688999999999999998733222 2 2377899999999886 3467899999954
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEE--ccCCCEEEEEe------CCCcEEEEeCCC
Q 004255 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--SHYSQWIAIVS------SKGTCHVFVLSP 462 (765)
Q Consensus 405 ~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaF--SpDg~~Las~S------~dgTVhIwdl~~ 462 (765)
+ +.+.++.-|.....-..|.| +||++++.+++ .+++|.+|..+.
T Consensus 238 ----~----------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 238 ----R----------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp ----T----------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred ----C----------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 2 34555554422223445655 99999988877 567898888753
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.47 E-value=0.018 Score=63.42 Aligned_cols=95 Identities=5% Similarity=-0.085 Sum_probs=58.6
Q ss_pred CCeEEEEECCCCcEEEE----eccCCC--CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255 348 AGIVVVKDFVTRAIISQ----FKAHTS--PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~----~~aH~~--~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~ 421 (765)
++.|..||..++..... ..++.. |.+.|+|+|++..|..+....+.|++|+.. | .
T Consensus 239 ~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~--------g----------~- 299 (409)
T 3hrp_A 239 NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD--------G----------E- 299 (409)
T ss_dssp TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT--------C----------C-
T ss_pred CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC--------C----------C-
Confidence 56788888877653222 222222 224899999644444444446678889863 2 1
Q ss_pred EEEEe-c----cc--------ccccEEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 004255 422 LYKLH-R----GI--------TSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS 461 (765)
Q Consensus 422 l~~l~-r----G~--------~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~ 461 (765)
+..+. . |. .-.....|+|++||+++++-+ .++.|++|++.
T Consensus 300 ~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 300 CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence 11111 1 10 012378999999999888877 88999999974
No 218
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.45 E-value=0.051 Score=56.72 Aligned_cols=175 Identities=13% Similarity=0.069 Sum_probs=113.1
Q ss_pred CEEEEEECCCCeEEEEEeCCC--CEEEEEecCCeEEEEe--CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 004255 173 TAVRFYSFQSHCYEHVLRFRS--SVCMVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s--~V~sV~~s~~~LaV~~--~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (765)
.+|+++|+++|+.+.++.... ....+.+..+.|.++. ++.|.++|..|++.+.++... .|+
T Consensus 44 s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~-------------- 108 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD-------------- 108 (266)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS--------------
T ss_pred CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC--------------
Confidence 589999999999999998654 3345667777776655 467999999999988777532 110
Q ss_pred eeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCC
Q 004255 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (765)
Q Consensus 249 ~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~ 328 (765)
...+ ++-+.. +.
T Consensus 109 g~gl-----t~Dg~~-----------------------------l~---------------------------------- 120 (266)
T 2iwa_A 109 GWGL-----ATDGKI-----------------------------LY---------------------------------- 120 (266)
T ss_dssp CCEE-----EECSSS-----------------------------EE----------------------------------
T ss_pred eEEE-----EECCCE-----------------------------EE----------------------------------
Confidence 0112 111100 00
Q ss_pred ccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc--CCC---CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCc
Q 004255 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA--HTS---PISALCFDPSGTLLVTASVYGNNINIFRIMPSC 403 (765)
Q Consensus 329 ~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a--H~~---~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~ 403 (765)
....+++|.++|..+.+.+..+.- +.. .++.|.|. +|.+.+.. .....|.+.|..+
T Consensus 121 ---------------vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~-~~~~~V~vID~~t-- 181 (266)
T 2iwa_A 121 ---------------GSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANI-WQTDCIARISAKD-- 181 (266)
T ss_dssp ---------------EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE-TTSSEEEEEETTT--
T ss_pred ---------------EECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEec-CCCCeEEEEECCC--
Confidence 001256899999999988888763 212 36788888 78655554 4355799999865
Q ss_pred ccCCCCCCccccCCcceEEEEEec-ccc----------cccEEEEEEccCCCEEEE-EeCCCcEEEEeCCCCC
Q 004255 404 MRSGSGNHKYDWNSSHVHLYKLHR-GIT----------SATIQDICFSHYSQWIAI-VSSKGTCHVFVLSPFG 464 (765)
Q Consensus 404 ~~~~sG~~~~~~~~s~~~l~~l~r-G~~----------~a~I~slaFSpDg~~Las-~S~dgTVhIwdl~~~g 464 (765)
| +.+..+.- |.. ......|+|+||++.|.+ +-..+++.+.++.+..
T Consensus 182 -----g----------~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 182 -----G----------TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp -----C----------CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred -----C----------cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 3 23344432 210 124689999999876554 5567888888887653
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.44 E-value=0.04 Score=58.07 Aligned_cols=97 Identities=12% Similarity=0.137 Sum_probs=58.6
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCC-CCccccCCcceEEEEEec
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG-NHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG-~~~~~~~~s~~~l~~l~r 427 (765)
+.|..+| +++. ..+..+....+.++|+|||+.|..+...+..|.+||+... .| .. . ....+..+.
T Consensus 161 ~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~-----~Gl~~----~-~~~~~~~~~- 226 (326)
T 2ghs_A 161 GSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR-----TGLPT----G-KAEVFIDST- 226 (326)
T ss_dssp EEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT-----TCCBS----S-CCEEEEECT-
T ss_pred eEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccc-----cCCcc----c-CceEEEECC-
Confidence 3455555 4443 2333333456789999999987666654567999997410 02 10 0 001222221
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl 460 (765)
+ .......+++++||++.++...++.|.+|+.
T Consensus 227 ~-~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 227 G-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp T-SSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred C-CCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 1 1234678999999998777767788999876
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.44 E-value=0.006 Score=68.08 Aligned_cols=56 Identities=9% Similarity=-0.129 Sum_probs=45.0
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe-----------CCeEEEEECCCCceeEEEEe
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~-----------~~~I~iwD~~t~~~l~tl~t 229 (765)
++|.++|+.+++.+.++.....- .|.+++ +.|.|+. ++.|.++|..+++...++..
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v 167 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL 167 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence 58999999999999999854322 788887 6666654 35799999999999888864
No 221
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.44 E-value=0.014 Score=59.71 Aligned_cols=100 Identities=9% Similarity=0.033 Sum_probs=60.8
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEC----CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFD----PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFS----pdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
.+.|..||.. ++... +..+......++|+ |+|+.|..+...+..|.+||+... |.. .....+.
T Consensus 152 ~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~------g~~-----~~~~~~~ 218 (314)
T 1pjx_A 152 FGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP------AKI-----ENKKVWG 218 (314)
T ss_dssp CEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET------TEE-----EEEEEEE
T ss_pred CCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCC------Ccc-----ccceEEE
Confidence 3456667765 44333 33333456889999 999766655544556999997421 200 0000111
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
.+. +.....+..++|++||+++++...++.|.+|+..
T Consensus 219 ~~~-~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 219 HIP-GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp ECC-CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ECC-CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence 221 1110347889999999988888888999999865
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.43 E-value=0.029 Score=58.25 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=43.3
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S 450 (765)
....|+++++|++.++. . + .|.+|+.. | ..+..+... ..+.+++|++|++.|.+++
T Consensus 240 ~pdgi~~d~~G~lwv~~-~-~-gv~~~~~~--------g----------~~~~~~~~~---~~~~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 240 LPDGFCVDRGGWLWSSS-G-T-GVCVFDSD--------G----------QLLGHIPTP---GTASNCTFDQAQQRLFITG 295 (305)
T ss_dssp CCCSEEECTTSCEEECC-S-S-EEEEECTT--------S----------CEEEEEECS---SCCCEEEECTTSCEEEEEE
T ss_pred CCCeEEECCCCCEEEec-C-C-cEEEECCC--------C----------CEEEEEECC---CceeEEEEeCCCCEEEEEc
Confidence 34568999999976654 3 3 38899862 3 344444322 2478899999999999988
Q ss_pred CCCcEEE
Q 004255 451 SKGTCHV 457 (765)
Q Consensus 451 ~dgTVhI 457 (765)
.++..++
T Consensus 296 ~~~l~~~ 302 (305)
T 3dr2_A 296 GPCLWML 302 (305)
T ss_dssp TTEEEEE
T ss_pred CCeEEEE
Confidence 8754433
No 223
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.38 E-value=0.00053 Score=75.61 Aligned_cols=98 Identities=10% Similarity=0.024 Sum_probs=72.9
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc---------CCCEEEEEeCCCCcccCCCCCCccccCCc
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~---------dGt~IrVWdi~~~~~~~~sG~~~~~~~~s 418 (765)
++.|.+.|..+++.+.++..-..| . |+|||||++|..++. ++..|.+||..+.
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~---------------- 119 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL---------------- 119 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC----------------
T ss_pred CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC----------------
Confidence 579999999999999999876667 4 999999999887762 2346999998652
Q ss_pred ceEEEEEeccc-----ccccEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCC
Q 004255 419 HVHLYKLHRGI-----TSATIQDICFSHYSQWIAIVSS--KGTCHVFVLSPFG 464 (765)
Q Consensus 419 ~~~l~~l~rG~-----~~a~I~slaFSpDg~~Las~S~--dgTVhIwdl~~~g 464 (765)
..+.++.-+. ....-..++|+|||++|.++.. +++|.|+|+.+..
T Consensus 120 -~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~ 171 (386)
T 3sjl_D 120 -LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA 171 (386)
T ss_dssp -CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred -eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc
Confidence 2344442211 0112345899999999998874 6899999998754
No 224
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.33 E-value=0.17 Score=50.88 Aligned_cols=89 Identities=13% Similarity=0.065 Sum_probs=54.4
Q ss_pred CeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 349 GIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 349 G~V~IwDl~s~~~i~-~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
+.|.+||. +++... .+..+...+.+|+++++|++.++... +..|.+||.. |. ...+.+..
T Consensus 209 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~~--------g~---------~~~~~~~~ 269 (300)
T 2qc5_A 209 NKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG-ANQIGRITND--------NT---------IQEYQLQT 269 (300)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT-TTEEEEECTT--------SC---------EEEEECCS
T ss_pred CEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC-CCeEEEECCC--------Cc---------EEEEECCc
Confidence 45666666 343322 23345567889999999997776544 3458889862 21 12222221
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl 460 (765)
....+.+|++++||+..++.. . .|..|+.
T Consensus 270 --~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 270 --ENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp --TTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred --cCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 123578899999998665544 4 6666654
No 225
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.26 E-value=0.035 Score=57.89 Aligned_cols=57 Identities=7% Similarity=-0.073 Sum_probs=45.5
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEE--EEEecCCeEEEEe--CCeEEEEECCCCceeEEEEe
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVC--MVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~--sV~~s~~~LaV~~--~~~I~iwD~~t~~~l~tl~t 229 (765)
..|+.+|+++|+.+.++......+ .|....+.|-+.. ++.+.+||..|++.+.++..
T Consensus 65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~ 125 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNY 125 (262)
T ss_dssp EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEEC
Confidence 489999999999999999877654 4666666665554 56899999999998887763
No 226
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.22 E-value=0.035 Score=58.02 Aligned_cols=56 Identities=5% Similarity=-0.034 Sum_probs=44.6
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEE--EEEecCCeEEEEe--CCeEEEEECCCCceeEEEEe
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVC--MVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~--sV~~s~~~LaV~~--~~~I~iwD~~t~~~l~tl~t 229 (765)
+.|+.+|+++|+.+.++ ++...+ .+.+..+.|-+.. ++.+.+||+.|++.+.++..
T Consensus 75 g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 75 GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 46999999999999999 776654 4777776665554 56899999999998888763
No 227
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.17 E-value=0.0031 Score=68.73 Aligned_cols=94 Identities=11% Similarity=-0.014 Sum_probs=68.5
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc---------CCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (765)
Q Consensus 350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~---------dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~ 420 (765)
+|.++|..+++.+.++..-..+ .++|||||++|..+.. ++..|.+||+.+. .
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~-----------------~ 108 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF-----------------L 108 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC-----------------c
Confidence 8999999999999998866556 8999999999998863 2456899998542 2
Q ss_pred EEEEEecc-----cccccEEEEEEccCCCEEEEEeC--CCcEEEEeCCCC
Q 004255 421 HLYKLHRG-----ITSATIQDICFSHYSQWIAIVSS--KGTCHVFVLSPF 463 (765)
Q Consensus 421 ~l~~l~rG-----~~~a~I~slaFSpDg~~Las~S~--dgTVhIwdl~~~ 463 (765)
.+.++.-+ .+...-..++|||||++|.+++. +++|.++| ...
T Consensus 109 ~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~ 157 (373)
T 2mad_H 109 PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG 157 (373)
T ss_pred EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC
Confidence 23322211 00012357999999999999874 47899999 653
No 228
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.08 E-value=0.0014 Score=71.67 Aligned_cols=94 Identities=10% Similarity=-0.060 Sum_probs=70.8
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE---------cCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS---------VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (765)
Q Consensus 350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS---------~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~ 420 (765)
.|.|.|..+++.+.+|..-..| .++|+|||++|..+. .++..|.+||+.+ + +
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-------~----------~ 107 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-------F----------L 107 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-------C----------C
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-------C----------C
Confidence 8999999999999999866667 799999999999887 2356799999976 2 3
Q ss_pred EEEEEecc-cc----cccEEEEEEccCCCEEEEEeC--CCcEEE--EeCCC
Q 004255 421 HLYKLHRG-IT----SATIQDICFSHYSQWIAIVSS--KGTCHV--FVLSP 462 (765)
Q Consensus 421 ~l~~l~rG-~~----~a~I~slaFSpDg~~Las~S~--dgTVhI--wdl~~ 462 (765)
.+.++.-| .. ...-..++|||||++|.++.. ..++.+ +|+.+
T Consensus 108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 45555322 00 011245899999999999874 467888 88865
No 229
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.05 E-value=0.43 Score=50.47 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=59.6
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 004255 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (765)
Q Consensus 345 ~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~ 424 (765)
+..+|.+..+|..+++.+-.... .....+..+ +..|..++.+|. +..+|..+ | ..+++
T Consensus 245 ~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~-l~~~d~~t-------G----------~~~w~ 302 (376)
T 3q7m_A 245 LAYNGNLTALDLRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDR-VMALTIDG-------G----------VTLWT 302 (376)
T ss_dssp ECTTSCEEEEETTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCC-EEEEETTT-------C----------CEEEE
T ss_pred EecCcEEEEEECCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCe-EEEEECCC-------C----------cEEEe
Confidence 34678999999999988766543 334445443 556666777565 88999865 4 35555
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 425 l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
.... ....+..... .+..|.+++.+|.+++||..+
T Consensus 303 ~~~~-~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 303 QSDL-LHRLLTSPVL--YNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp ECTT-TTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred eccc-CCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence 4311 1111222222 256788999999999999875
No 230
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.04 E-value=0.036 Score=64.94 Aligned_cols=94 Identities=12% Similarity=0.072 Sum_probs=56.3
Q ss_pred CCeEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCC---CEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 348 AGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 348 dG~V~IwDl~s~~-~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG---t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
...|.++|+.++. ....|..+....... |+++|..|+-.+.++ ..|.++|+.. +. .....
T Consensus 258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~-------~~--------~~~~~ 321 (693)
T 3iuj_A 258 GNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN-------PG--------PAHWR 321 (693)
T ss_dssp CCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS-------CC--------GGGCE
T ss_pred CcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC-------CC--------ccccE
Confidence 3578899987764 455666676666555 667766665444332 3577778743 10 00112
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCC---cEEEEeCC
Q 004255 424 KLHRGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLS 461 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dg---TVhIwdl~ 461 (765)
.+... ....+ .|++++++|+....++ .|++|++.
T Consensus 322 ~l~~~-~~~~~---~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 322 DLIPE-RQQVL---TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp EEECC-CSSCE---EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred EEecC-CCCEE---EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 33222 22223 8999999988877655 57777775
No 231
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.00 E-value=0.13 Score=52.86 Aligned_cols=57 Identities=9% Similarity=-0.006 Sum_probs=44.7
Q ss_pred CEEEEEECCCCeEEEEEeCCCCE--EEEEecCCeEEEEe--CCeEEEEECCCCceeEEEEe
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSV--CMVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V--~sV~~s~~~LaV~~--~~~I~iwD~~t~~~l~tl~t 229 (765)
..|+.+|+++|+.+.++..+... ..+.+..+.|-+.. ++.+++||..|++.+.++..
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~ 103 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRY 103 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeC
Confidence 48999999999999999987765 34555566555544 56799999999998887753
No 232
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=96.97 E-value=0.31 Score=50.33 Aligned_cols=92 Identities=13% Similarity=0.037 Sum_probs=55.5
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-----CEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-----NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG-----t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
+.|..+|..+++..... +....+.++|+|||+.|..+.... ..|.+||+... + .....
T Consensus 169 ~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~------~---------l~~~~ 231 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG------A---------LHDRR 231 (305)
T ss_dssp EEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT------E---------EEEEE
T ss_pred CeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC------C---------ccCCe
Confidence 56777787666543333 334567899999999888777642 56999997431 0 00111
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl 460 (765)
.+... .......+++++||++. +++.+| |++|+.
T Consensus 232 ~~~~~-~~~~pdgi~~d~~G~lw-v~~~~g-v~~~~~ 265 (305)
T 3dr2_A 232 HFASV-PDGLPDGFCVDRGGWLW-SSSGTG-VCVFDS 265 (305)
T ss_dssp EEECC-SSSCCCSEEECTTSCEE-ECCSSE-EEEECT
T ss_pred EEEEC-CCCCCCeEEECCCCCEE-EecCCc-EEEECC
Confidence 11110 11234568999999944 444454 888875
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.94 E-value=0.044 Score=64.59 Aligned_cols=41 Identities=7% Similarity=-0.019 Sum_probs=29.8
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
+.++++..+. .+..-.++..+..|++++.||+++.||..+.
T Consensus 466 ~~~W~~~~~~---~~~~g~~~tagglvf~gt~dg~l~a~D~~tG 506 (689)
T 1yiq_A 466 QAAWEVPYVT---IFNGGTLSTAGNLVFEGSADGRVIAYAADTG 506 (689)
T ss_dssp EEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CeEeEccCCC---CccCccceECCCEEEEECCCCcEEEEECCCC
Confidence 4566654332 2333467778889999999999999999873
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.93 E-value=0.095 Score=60.62 Aligned_cols=220 Identities=11% Similarity=0.046 Sum_probs=126.3
Q ss_pred CEEEEEECCCCeEEEEEeCC--CCEEEEEe-c-C--CeEEEEe-------------------CCeEEEEECCCCceeEEE
Q 004255 173 TAVRFYSFQSHCYEHVLRFR--SSVCMVRC-S-P--RIVAVGL-------------------ATQIYCFDALTLENKFSV 227 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~--s~V~sV~~-s-~--~~LaV~~-------------------~~~I~iwD~~t~~~l~tl 227 (765)
++|.+.|+++.+++..++.+ .....+++ + | ++|.++. ++.+.+.|..+++..+++
T Consensus 112 ~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI 191 (595)
T 1fwx_A 112 TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQV 191 (595)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEE
Confidence 68999999999999977654 46778886 3 3 6777763 125899999999999988
Q ss_pred EecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhh
Q 004255 228 LTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (765)
Q Consensus 228 ~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~l 305 (765)
....+|+ -++++| +|+..++.+.- .+.. .+..+ ...-+. +.-..+. ..
T Consensus 192 ~Vgg~pd--------------~~~~spdGk~~~vt~~~se---~~~~-i~~~~--------~~~~d~-v~V~~~~---~~ 241 (595)
T 1fwx_A 192 LVSGNLD--------------NCDADYEGKWAFSTSYNSE---KGMT-LPEMT--------AAEMDH-IVVFNIA---EI 241 (595)
T ss_dssp EESSCCC--------------CEEECSSSSEEEEEESCTT---CCSS-HHHHT--------CCSEEE-EEEEEHH---HH
T ss_pred EeCCCcc--------------ceEECCCCCEEEEEecCcc---cCcc-hhhcc--------ccccce-EEEeecc---ce
Confidence 7533442 366777 66666553310 0000 00000 000000 0000000 00
Q ss_pred hcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC--CcE-EEEeccCCCCeEEEEECCCCC
Q 004255 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT--RAI-ISQFKAHTSPISALCFDPSGT 382 (765)
Q Consensus 306 a~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s--~~~-i~~~~aH~~~IsaLaFSpdG~ 382 (765)
.. ..++ ++. ..-+.|.|.|..+ ++. +..+..-. ...++.|+|||+
T Consensus 242 ~~------------~v~~-----------Gk~--------~~i~~V~VID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDGk 289 (595)
T 1fwx_A 242 EK------------AIAA-----------GDY--------QELNGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKK 289 (595)
T ss_dssp HH------------HHHH-----------TCS--------EEETTEEEEECSGGGCCSSEEEEEEES-SCCCEEECTTSS
T ss_pred eE------------eccC-----------CCe--------eEECcEEEEeCcccCCceeEEEEecCC-CceEEEEcCCCC
Confidence 00 0000 110 0114599999998 555 56665332 235789999999
Q ss_pred EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 383 lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
+++.++.....|.|+|+...... ..|. +......+.++.-|. .-..++|+|||....+.-.|++|-+|++..
T Consensus 290 ~v~V~~~~s~~VsVid~~~~~~~-~~~~----l~~~~~v~~~v~vG~---gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 290 HLCVAGKLSPTVTVLDVTRFDAV-FYEN----ADPRSAVVAEPELGL---GPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEEECTTSSBEEEEEGGGHHHH-HHSC----CCGGGGEEECCBCCS---CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEEEeCCCCCeEEEEECcccccc-cccc----cCcccceEEEcCCCC---CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 99998887778999998641000 0000 001112333444342 357899999994445566799999999976
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.92 E-value=0.04 Score=64.80 Aligned_cols=58 Identities=17% Similarity=0.057 Sum_probs=42.7
Q ss_pred CEEEEEECCCCeEEEEEeCCCC-----------E-EEEEecCCeEEEE-eCCeEEEEECCCCceeEEEEec
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSS-----------V-CMVRCSPRIVAVG-LATQIYCFDALTLENKFSVLTY 230 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~-----------V-~sV~~s~~~LaV~-~~~~I~iwD~~t~~~l~tl~t~ 230 (765)
+.|.-+|.++|+.+.+++.... + ..+.+....|.++ .++.|+.+|+.|++.+++....
T Consensus 87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~ 157 (677)
T 1kb0_A 87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTF 157 (677)
T ss_dssp GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETT
T ss_pred CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecCC
Confidence 5788999999999998876431 1 2344455556655 4678999999999999887643
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.92 E-value=0.14 Score=54.24 Aligned_cols=89 Identities=10% Similarity=0.043 Sum_probs=51.8
Q ss_pred CCCeEEEEECCCCcEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255 347 NAGIVVVKDFVTRAIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~a-H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l 425 (765)
.+|.|..+|..+++.+-.... ....+....+ .+..|..++.+| .+.+||..+ | +.+++.
T Consensus 285 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g-~l~~~d~~t-------G----------~~~~~~ 344 (376)
T 3q7m_A 285 QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEG-YLHWINVED-------G----------RFVAQQ 344 (376)
T ss_dssp TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTS-EEEEEETTT-------C----------CEEEEE
T ss_pred CCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCC-eEEEEECCC-------C----------cEEEEE
Confidence 356777888888877665542 1122222233 245677777756 589999865 4 355554
Q ss_pred ecccccccEE-EEEEccCCCEEEEEeCCCcEEEEe
Q 004255 426 HRGITSATIQ-DICFSHYSQWIAIVSSKGTCHVFV 459 (765)
Q Consensus 426 ~rG~~~a~I~-slaFSpDg~~Las~S~dgTVhIwd 459 (765)
.-.. ..+. .... .+..|.+++.+|+++.|+
T Consensus 345 ~~~~--~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 345 KVDS--SGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ECCT--TCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred ecCC--CcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 3211 1111 1112 245788899999999987
No 237
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=96.91 E-value=0.051 Score=57.58 Aligned_cols=79 Identities=8% Similarity=0.119 Sum_probs=48.3
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc-ceEEEEE-ecccccccEEEEEEccCCCEEEE
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS-HVHLYKL-HRGITSATIQDICFSHYSQWIAI 448 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s-~~~l~~l-~rG~~~a~I~slaFSpDg~~Las 448 (765)
.++.|+|+|||+.|..++..++ +||.+....... +... ... ...+..+ .+| ....+++++||+.+++
T Consensus 196 ~~~gia~s~dg~~ly~~~~~~~--~l~~~~~~~~~~--~~~~---~~~~~~~~~~~g~~g----~pdgia~d~~G~l~va 264 (343)
T 2qe8_A 196 GVNGIVLDAENEWLYLSPMHST--SMYRIKSADLSN--LQLT---DAELGSKIERYSEKP----ICDGISIDKDHNIYVG 264 (343)
T ss_dssp CEEEEEECTTSCEEEEEESSCS--EEEEEEHHHHTC--TTCC---HHHHHTTCEEEEECC----SCSCEEECTTCCEEEE
T ss_pred ccceeEeccCCCEEEEEeCCCC--eEEEEEHHHhcC--CCCC---hhhhhcceEecccCC----CCceEEECCCCCEEEE
Confidence 3678999999999999888776 445442210000 0000 000 0000111 122 2346999999999999
Q ss_pred EeCCCcEEEEeC
Q 004255 449 VSSKGTCHVFVL 460 (765)
Q Consensus 449 ~S~dgTVhIwdl 460 (765)
...++.|.+||.
T Consensus 265 ~~~~~~V~~~d~ 276 (343)
T 2qe8_A 265 DLAHSAIGVITS 276 (343)
T ss_dssp EGGGTEEEEEET
T ss_pred ccCCCeEEEEEC
Confidence 999999999997
No 238
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.84 E-value=0.17 Score=52.64 Aligned_cols=57 Identities=4% Similarity=-0.007 Sum_probs=48.1
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t 229 (765)
+++.+||.++.+.+.++.....=+.++...+.|.++. .++|+++|..|++.+.++..
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred CEEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 6899999999999999998766577778887777765 45799999999998888763
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.81 E-value=0.37 Score=50.16 Aligned_cols=57 Identities=9% Similarity=-0.032 Sum_probs=46.2
Q ss_pred CEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t 229 (765)
++|.++|.++++.+.++.+. ..-+.+..+.+.|.++. .++|+++|..|++.+.++..
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V 144 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNV 144 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEE
Confidence 68999999999999999876 44466777777666654 45799999999998888763
No 240
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.76 E-value=0.068 Score=62.95 Aligned_cols=57 Identities=23% Similarity=0.078 Sum_probs=41.7
Q ss_pred CEEEEEECCCCeEEEEEeCCCC-----------E-EEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSS-----------V-CMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~-----------V-~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t 229 (765)
+.|.-+|.++|+.+..++.... + ..+......|.++. ++.|+.+|+.|++.+++...
T Consensus 80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 4788999999999998865421 1 12333455566554 67899999999999988764
No 241
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.74 E-value=0.13 Score=53.70 Aligned_cols=57 Identities=9% Similarity=-0.128 Sum_probs=48.8
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t 229 (765)
+++.+||.++.+.+.++.+...-+.++...+.|.++. .++|+++|..|++.+.++..
T Consensus 116 ~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 116 GLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CEEEEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 6899999999999999998766678888888777765 56899999999998888864
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.58 E-value=0.13 Score=52.82 Aligned_cols=91 Identities=14% Similarity=0.121 Sum_probs=53.5
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG 428 (765)
|.+..+|. +++.+..+......+.++.++++|.+.+ ++.+|. +..||. . | ..++.+.-+
T Consensus 235 ~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~gg-l~~~d~-~-------g----------~~~~~~~~~ 293 (330)
T 3hxj_A 235 GHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYF-GSYDGH-LYAINP-D-------G----------TEKWNFETG 293 (330)
T ss_dssp TEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEE-ECTTCE-EEEECT-T-------S----------CEEEEEECS
T ss_pred CeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEE-ecCCCC-EEEECC-C-------C----------cEEEEEEcC
Confidence 44555553 3444444544444455567788887654 555454 777884 2 3 344444322
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 429 ~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
...+.++.+.+||+ |..++.+|.+++......
T Consensus 294 --~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 294 --SWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp --SCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred --CccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 23467788888887 556899999999887653
No 243
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.47 E-value=0.9 Score=46.67 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=48.2
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t 229 (765)
+++.+||.++.+.+.++.+...-+.++...+.|.++. .++|+++|..|++.+.++..
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 6899999999999999998776678887787777664 45799999999998888864
No 244
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=96.42 E-value=0.00078 Score=73.09 Aligned_cols=93 Identities=10% Similarity=0.090 Sum_probs=41.5
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCC-eE-EEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255 346 DNAGIVVVKDFVTRAIISQFKAHTSP-IS-ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~~i~~~~aH~~~-Is-aLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~ 423 (765)
..||.|..||..+++.+..++.+... +. +.++. ++..|++++.+| .+..||..+ | ..++
T Consensus 56 s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg-~v~a~D~~t-------G----------~~~w 116 (369)
T 2hz6_A 56 PNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQD-IWYVIDLLT-------G----------EKQQ 116 (369)
T ss_dssp TTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEE-EEEEECCC-----------------------
T ss_pred CCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCC-EEEEEECCC-------C----------cEEE
Confidence 35788899998888776555443211 10 11112 344666777755 599999865 4 3455
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
++..+. ...++|++..|++++.|++++.||..+.
T Consensus 117 ~~~~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 117 TLSSAF------ADSLSPSTSLLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp ----------------------EEEEEEEEEEECCCSSSS
T ss_pred EecCCC------cccccccCCEEEEEecCCEEEEEECCCC
Confidence 554221 2456789999999999999999998753
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.40 E-value=0.15 Score=59.64 Aligned_cols=57 Identities=21% Similarity=-0.021 Sum_probs=41.5
Q ss_pred CEEEEEECCCCeEEEEEeCCCC-----------E-EEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSS-----------V-CMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~-----------V-~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t 229 (765)
+.|.-+|.++|+.+.+++.... + ..+.+....|.++. ++.|+.+|+.|++.+++...
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 5788999999999998865421 1 12333445555554 67899999999999988764
No 246
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.20 E-value=0.27 Score=56.46 Aligned_cols=26 Identities=4% Similarity=-0.139 Sum_probs=20.1
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255 438 CFSHYSQWIAIVSSKGTCHVFVLSPF 463 (765)
Q Consensus 438 aFSpDg~~Las~S~dgTVhIwdl~~~ 463 (765)
.+...+..|..++.||+++.||..+.
T Consensus 470 ~~~t~gg~v~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 470 TLYTKGGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp CEEETTTEEEEECTTSEEEEEETTTC
T ss_pred eEEECCCEEEEEcCCCeEEEEECCCC
Confidence 34445677888999999999998763
No 247
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=95.62 E-value=0.21 Score=57.67 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=57.0
Q ss_pred cCCCCeEEEEECCCCc------------EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc
Q 004255 345 MDNAGIVVVKDFVTRA------------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK 412 (765)
Q Consensus 345 ~~~dG~V~IwDl~s~~------------~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~ 412 (765)
...+.+|.++|+.+.+ .+.++..-.+ -..++|+|+| .+.+...-+..|-+||+.... +...|.
T Consensus 295 ~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g-P~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~-~~~~g~-- 369 (595)
T 1fwx_A 295 GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG-PLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAI-RAYAGE-- 369 (595)
T ss_dssp CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC-EEEEEECTTS-EEEEEETTTTEEEEEEHHHHH-HHHHTC--
T ss_pred CCCCCeEEEEECcccccccccccCcccceEEEcCCCCC-cceEEECCCC-eEEEEEecCCcEEEEEhhHhh-hhhccc--
Confidence 3456788899988652 4555554434 4678999999 676666667789999985410 000000
Q ss_pred cccCCcceEEEEEecccccccE---EEEEEccCCCEEEEEeC
Q 004255 413 YDWNSSHVHLYKLHRGITSATI---QDICFSHYSQWIAIVSS 451 (765)
Q Consensus 413 ~~~~~s~~~l~~l~rG~~~a~I---~slaFSpDg~~Las~S~ 451 (765)
.....+.++.-+...... ..+.++|||+||.++..
T Consensus 370 ----~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 370 ----KVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp ----SCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred ----ccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 001244455433221111 12356899999988853
No 248
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.51 E-value=2.1 Score=46.41 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=63.3
Q ss_pred CCCeEEEEEC-------CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 004255 347 NAGIVVVKDF-------VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (765)
Q Consensus 347 ~dG~V~IwDl-------~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~ 419 (765)
.+|.+..|++ .+.+.+.+|.-- +.+-.+..++....|..+-++ .-|..++..+. ... ..
T Consensus 151 k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~--~~~----------~~ 216 (355)
T 3amr_A 151 KEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEED-EAIWKFSAEPD--GGS----------NG 216 (355)
T ss_dssp SSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETT-TEEEEEECSTT--SCS----------CC
T ss_pred CCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEeccc-ceEEEEeCCcC--CCC----------Cc
Confidence 3466666666 233567777653 467788999988888888884 44666665442 100 11
Q ss_pred eEEEEEecccccccEEEEEE--ccCCC-EEEEEe-CCCcEEEEeCC
Q 004255 420 VHLYKLHRGITSATIQDICF--SHYSQ-WIAIVS-SKGTCHVFVLS 461 (765)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaF--SpDg~-~Las~S-~dgTVhIwdl~ 461 (765)
+.+..+..+.-.+.+-.|++ .+|++ ||++++ .+.+.+|||..
T Consensus 217 ~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 217 TVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 33333322333346888888 67777 777776 67799999996
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.21 E-value=0.78 Score=53.66 Aligned_cols=40 Identities=10% Similarity=0.073 Sum_probs=28.0
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
+.+++...+. .+....+...+..|++++.|+.+++||..+
T Consensus 449 ~~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t 488 (668)
T 1kv9_A 449 KAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADK 488 (668)
T ss_dssp EEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred cEEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhc
Confidence 4555554332 233345666788999999999999999875
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=94.69 E-value=3.9 Score=40.85 Aligned_cols=71 Identities=10% Similarity=0.008 Sum_probs=44.1
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 004255 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (765)
Q Consensus 370 ~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~ 449 (765)
..-..|+|+|++..|..+....+.|.++|... ..+..+..+. ..-..|++. +.+|..+
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g------------------~~~~~~~~~~--~~P~gi~~d--~~~lyva 224 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ------------------PGRRKVLEGL--QYPFAVTSY--GKNLYYT 224 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTE------------------EEEEEEEECC--CSEEEEEEE--TTEEEEE
T ss_pred CCCcEEEEcCCCCEEEEEECCCCEEEEEecCC------------------CceEEEecCC--CCceEEEEe--CCEEEEE
Confidence 34678999999888877777667899999742 1222222221 123566654 4555555
Q ss_pred e-CCCcEEEEeCCC
Q 004255 450 S-SKGTCHVFVLSP 462 (765)
Q Consensus 450 S-~dgTVhIwdl~~ 462 (765)
. ..+.|.++|...
T Consensus 225 ~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 225 DWKTNSVIAMDLAI 238 (267)
T ss_dssp ETTTTEEEEEETTT
T ss_pred ECCCCeEEEEeCCC
Confidence 4 567888888764
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.16 E-value=3.9 Score=46.75 Aligned_cols=58 Identities=12% Similarity=0.065 Sum_probs=40.7
Q ss_pred CEEEEEECCCCeEEEEEeCCC-----CEE-EEEecCCeEEEEe-------CCeEEEEECCCCceeEEEEec
Q 004255 173 TAVRFYSFQSHCYEHVLRFRS-----SVC-MVRCSPRIVAVGL-------ATQIYCFDALTLENKFSVLTY 230 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s-----~V~-sV~~s~~~LaV~~-------~~~I~iwD~~t~~~l~tl~t~ 230 (765)
+.|.-+|.++|+.+...+... .+. +-.+....|.++. ++.|+.||+.|++.+++....
T Consensus 125 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 195 (571)
T 2ad6_A 125 GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred CEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence 689999999999998876543 221 1111234555544 468999999999999988753
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.08 E-value=2.5 Score=48.84 Aligned_cols=59 Identities=15% Similarity=0.046 Sum_probs=42.3
Q ss_pred CCEEEEEECCCCeEEEEEeCCCCE-----------------------------------------EEEEecCCeEEEEeC
Q 004255 172 PTAVRFYSFQSHCYEHVLRFRSSV-----------------------------------------CMVRCSPRIVAVGLA 210 (765)
Q Consensus 172 p~tV~lWdlktg~~v~tL~~~s~V-----------------------------------------~sV~~s~~~LaV~~~ 210 (765)
++.|+-+|.++|+++..+....+. .++.....+|.++..
T Consensus 181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g 260 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG 260 (599)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence 468999999999999888654321 122333456666654
Q ss_pred C-----------------eEEEEECCCCceeEEEEec
Q 004255 211 T-----------------QIYCFDALTLENKFSVLTY 230 (765)
Q Consensus 211 ~-----------------~I~iwD~~t~~~l~tl~t~ 230 (765)
+ .|+.+|+.|++.++.....
T Consensus 261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred CCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 3 7999999999999888753
No 253
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=93.70 E-value=11 Score=42.15 Aligned_cols=198 Identities=12% Similarity=0.123 Sum_probs=112.3
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEEEEE-ecCCeEEEEeCCeEEEEECCCCc-eeEEEEecCCcccCCCCcccccccccee
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVCMVR-CSPRIVAVGLATQIYCFDALTLE-NKFSVLTYPVPQLAGQGAVGINVGYGPM 250 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~sV~-~s~~~LaV~~~~~I~iwD~~t~~-~l~tl~t~p~p~~~~~~~~~~~~~~~~~ 250 (765)
++++++|+.+.+.++...++..|.-=+ ++++.|+...+..||-|++.... ..+...-|++-
T Consensus 86 ~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L----------------- 148 (494)
T 1bpo_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSL----------------- 148 (494)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGG-----------------
T ss_pred CeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhc-----------------
Confidence 699999999999999999988764333 57899999889999999986522 22222223220
Q ss_pred EEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCcc
Q 004255 251 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS 330 (765)
Q Consensus 251 Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s 330 (765)
+ +...+-|..+.... | -+.-|+.
T Consensus 149 ~-~~QIInY~~d~~~k-------W-----------------------------~~l~GI~-------------------- 171 (494)
T 1bpo_A 149 A-GCQIINYRTDAKQK-------W-----------------------------LLLTGIS-------------------- 171 (494)
T ss_dssp T-TCEEEEEEECTTSS-------E-----------------------------EEEEEEE--------------------
T ss_pred c-cceEEEEEECCCCC-------e-----------------------------EEEEeec--------------------
Confidence 0 11333343221000 0 0000110
Q ss_pred CCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCC---CCEEEEEEc--CCCEEEEEeCCCCccc
Q 004255 331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS---GTLLVTASV--YGNNINIFRIMPSCMR 405 (765)
Q Consensus 331 ~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpd---G~lLATaS~--dGt~IrVWdi~~~~~~ 405 (765)
...+.-.|.+.+|..+.+ .-..+.||...-..+.+.-+ .++++.|.. .|..++|-++.....
T Consensus 172 -----------~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~- 238 (494)
T 1bpo_A 172 -----------AQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT- 238 (494)
T ss_dssp -----------EETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCT-
T ss_pred -----------ccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCcc-
Confidence 001123578899988754 44668888554433333211 135555554 356799999843100
Q ss_pred CCCCCCccccCCcceEEEEEeccc--ccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 406 SGSGNHKYDWNSSHVHLYKLHRGI--TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 406 ~~sG~~~~~~~~s~~~l~~l~rG~--~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
|.. .-..+..++..-. ...--.++..|+.-..+..-+.-|.+|+||+.+...
T Consensus 239 ---~~~-----~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 239 ---GNQ-----PFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp ---TCC-----CCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred ---CCC-----CccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence 110 0012222322110 111234688888888999999999999999997543
No 254
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=93.42 E-value=2 Score=49.82 Aligned_cols=50 Identities=8% Similarity=0.077 Sum_probs=31.4
Q ss_pred CEEEEEECCCCeEEEEEeCCC---CEEEEEe-cCCeEEEEeC-------CeEEEEECCCCc
Q 004255 173 TAVRFYSFQSHCYEHVLRFRS---SVCMVRC-SPRIVAVGLA-------TQIYCFDALTLE 222 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s---~V~sV~~-s~~~LaV~~~-------~~I~iwD~~t~~ 222 (765)
..+.+||..+++-...-..+. .-.++.+ +.+++++|.. ..+.+||..+.+
T Consensus 265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 369999999886544322222 2234445 6677777652 358999987764
No 255
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.33 E-value=1.7 Score=49.96 Aligned_cols=85 Identities=20% Similarity=0.352 Sum_probs=54.3
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
.+|.|.-||+.+++.+-+++.+. ++..-.+...|.+++.++.|| .++.||.++ | +.+++++
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg-~l~A~D~~t-------G----------~~lW~~~ 524 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDG-YFKAFDAKS-------G----------KELWKFQ 524 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTS-EEEEEETTT-------C----------CEEEEEE
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCC-cEEEEECCC-------C----------CEEEEec
Confidence 46899999999999877765432 222212223466787888866 599999866 5 5788776
Q ss_pred cccccccEEEEEEccCCC-EEEEEeC
Q 004255 427 RGITSATIQDICFSHYSQ-WIAIVSS 451 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~-~Las~S~ 451 (765)
-+.. ..-.-+.|..||+ |+++.+-
T Consensus 525 ~~~g-~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 525 TGSG-IVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp CSSC-CCSCCEEEEETTEEEEEEEEC
T ss_pred CCCC-cccCceEEEECCEEEEEEEcc
Confidence 4321 0112266778886 5655543
No 256
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=93.09 E-value=23 Score=44.13 Aligned_cols=95 Identities=9% Similarity=0.112 Sum_probs=59.4
Q ss_pred CeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 349 GIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 349 G~V~IwDl~s~~~i~-~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
..|+|||+...+.+. .-..+. .|..+...-.|.+++.|+.... |.++..+.. . ..+..+.|
T Consensus 904 ~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I~vgD~~~S-v~~~~y~~~------~----------~~L~~~a~ 965 (1158)
T 3ei3_A 904 STVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFILVGDLMRS-VLLLAYKPM------E----------GNFEEIAR 965 (1158)
T ss_dssp TEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEEEEEESSBC-EEEEEEETT------T----------TEEEEEEE
T ss_pred CEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCEEEEEEhhhe-EEEEEEEcC------C----------CeEEEEEe
Confidence 467778876554332 111121 2334444446788888887544 555443221 0 36667766
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
.....+++++.|=.++ .++.+..+|.++++..++
T Consensus 966 D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 966 DFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp CCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred ecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 6666679999997665 667789999999999876
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=92.97 E-value=9.4 Score=39.26 Aligned_cols=72 Identities=14% Similarity=0.071 Sum_probs=42.0
Q ss_pred eEEEEECCCCCEEEEEEcC---------CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe--cccccccEEEEEEc
Q 004255 372 ISALCFDPSGTLLVTASVY---------GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH--RGITSATIQDICFS 440 (765)
Q Consensus 372 IsaLaFSpdG~lLATaS~d---------Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~--rG~~~a~I~slaFS 440 (765)
...|+++++|++.++.... ...|.++|-. | ..+..+. .|.....+.++++
T Consensus 231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~--------G----------~~~~~~~~~~g~~~~~~~~~~~- 291 (322)
T 2fp8_A 231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF--------G----------NILEVIPLPPPFAGEHFEQIQE- 291 (322)
T ss_dssp EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT--------S----------CEEEEEECCTTTTTSCCCEEEE-
T ss_pred CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC--------C----------CEEEEEECCCCCccccceEEEE-
Confidence 5679999999987765431 1235555531 3 2333332 2321234667777
Q ss_pred cCCCEEEEEeCCCcEEEEeCCC
Q 004255 441 HYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 441 pDg~~Las~S~dgTVhIwdl~~ 462 (765)
.+++..++....+.|.+|++..
T Consensus 292 ~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 292 HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp ETTEEEEECSSCSEEEEEEC--
T ss_pred eCCEEEEeecCCCceEEEeccc
Confidence 4666555556788899999864
No 258
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=92.96 E-value=0.28 Score=58.23 Aligned_cols=97 Identities=14% Similarity=0.071 Sum_probs=58.9
Q ss_pred CCeEEEEECCCC-cEEE-EeccCCCCeEEEEECCCCCEEEEEEcCC----CEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255 348 AGIVVVKDFVTR-AIIS-QFKAHTSPISALCFDPSGTLLVTASVYG----NNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (765)
Q Consensus 348 dG~V~IwDl~s~-~~i~-~~~aH~~~IsaLaFSpdG~lLATaS~dG----t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~ 421 (765)
...|+++|+.++ +.+. .+.. ....++|+|||+.|+..+.+. ..|.++++.+ +. .....
T Consensus 200 ~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt-------~~------~~~~l 263 (751)
T 2xe4_A 200 VYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK-------LQ------SEDVC 263 (751)
T ss_dssp CEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS-------CG------GGCEE
T ss_pred eEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC-------Cc------hhcEE
Confidence 347999999998 6321 1211 134688999999888777642 2466667632 10 00123
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCC---CcEEEEeCCCC
Q 004255 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSPF 463 (765)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~d---gTVhIwdl~~~ 463 (765)
++.. .......++.|||||++|+..+.+ ..|.++|+...
T Consensus 264 v~~~---~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 264 LYEE---HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEC---CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEec---CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 4332 112235688999999999887743 24666777653
No 259
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=92.58 E-value=2.8 Score=42.57 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=57.5
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG 428 (765)
+.|..+| .+++.+..+..+...+.++.++++|.+.+. +.++. +..+|.. | ..++.+..+
T Consensus 195 ~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~-t~~~g-l~~~~~~--------g----------~~~~~~~~~ 253 (330)
T 3hxj_A 195 DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVT-SLDGH-LYAINPD--------G----------TEKWRFKTG 253 (330)
T ss_dssp SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEE-ETTTE-EEEECTT--------S----------CEEEEEECS
T ss_pred CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEE-cCCCe-EEEECCC--------C----------CEeEEeeCC
Confidence 6788888 677777777666677889999999987664 44354 6666641 3 244444432
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (765)
Q Consensus 429 ~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl 460 (765)
...+.++.+.++++ |.+++.+|.+..||.
T Consensus 254 --~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 254 --KRIESSPVIGNTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp --SCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred --CCccccceEcCCCe-EEEecCCCCEEEECC
Confidence 12234456666664 667888888888873
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=92.57 E-value=12 Score=42.96 Aligned_cols=56 Identities=9% Similarity=-0.098 Sum_probs=40.2
Q ss_pred EEEEEECCCCeEEEEEeCCCCE----------EEEEecCCeEEEE-eCCeEEEEECCCCceeEEEEe
Q 004255 174 AVRFYSFQSHCYEHVLRFRSSV----------CMVRCSPRIVAVG-LATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 174 tV~lWdlktg~~v~tL~~~s~V----------~sV~~s~~~LaV~-~~~~I~iwD~~t~~~l~tl~t 229 (765)
.|.-+|.++|+.+.+++..... ..+......|.++ .++.|+.+|+.|++.++....
T Consensus 79 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 79 RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 4888999999999888764321 2223344455554 567899999999999988764
No 261
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=92.50 E-value=13 Score=39.92 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=41.9
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEEEEE-ecCCeEEEEeCCeEEEEECCC
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVCMVR-CSPRIVAVGLATQIYCFDALT 220 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~sV~-~s~~~LaV~~~~~I~iwD~~t 220 (765)
++|+++|+.+.+.++...++..|.==+ .+++.|+...+..||-|++..
T Consensus 87 ~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~ 135 (365)
T 2xzh_A 87 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 135 (365)
T ss_dssp TEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEESSEEEEEESST
T ss_pred CeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEcCCcEEEEcccC
Confidence 689999999999999999998775555 477999988899999999875
No 262
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=91.67 E-value=14 Score=38.32 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=55.0
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG-t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
.+.|.+.|+........+.........|+++|++..|.-+.... ..|..+++. |. ....+.
T Consensus 98 ~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--------G~----------~~~~~~ 159 (316)
T 1ijq_A 98 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV----------DIYSLV 159 (316)
T ss_dssp TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC----------CEEEEE
T ss_pred CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--------CC----------CeEEEE
Confidence 34666677654433323332334568999999666555555422 457777752 31 122222
Q ss_pred cccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS 461 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~ 461 (765)
.. .-..-..|+|+++++.|..+. ..+.|..++++
T Consensus 160 ~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 160 TE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp CS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 11 112467899999877765554 56789888876
No 263
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=90.79 E-value=4.9 Score=43.43 Aligned_cols=98 Identities=13% Similarity=0.236 Sum_probs=62.7
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC----CCCE--EEEEEcCC---CEEEEEeCCCCcccCCCCCCccccC
Q 004255 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP----SGTL--LVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWN 416 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp----dG~l--LATaS~dG---t~IrVWdi~~~~~~~~sG~~~~~~~ 416 (765)
...+-+.|||+ +++.+..+.. +.++.+.+-| .|+. ||.++..+ ..|+||++.+..
T Consensus 47 ~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~------------- 110 (355)
T 3amr_A 47 NKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN------------- 110 (355)
T ss_dssp ETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT-------------
T ss_pred cCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC-------------
Confidence 34578999999 8888888864 4566666655 2332 45555543 679999885420
Q ss_pred CcceEEEEEec-----ccccccEEEEEE--ccC-CC-EEEEEeCCCcEEEEeCCC
Q 004255 417 SSHVHLYKLHR-----GITSATIQDICF--SHY-SQ-WIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 417 ~s~~~l~~l~r-----G~~~a~I~slaF--SpD-g~-~Las~S~dgTVhIwdl~~ 462 (765)
..+..+-+ +..-..++.+|+ +|+ ++ ++.+...+|.+..|++..
T Consensus 111 ---~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~ 162 (355)
T 3amr_A 111 ---GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKA 162 (355)
T ss_dssp ---CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEE
T ss_pred ---CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEe
Confidence 12333311 011134677888 775 44 688888899999999865
No 264
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=90.30 E-value=15 Score=42.30 Aligned_cols=57 Identities=9% Similarity=-0.044 Sum_probs=39.6
Q ss_pred CEEEEEEC-CCCeEEEEEeCCCCE------------EEEEe--cCCe----EEEE-eCCeEEEEECCCCceeEEEEe
Q 004255 173 TAVRFYSF-QSHCYEHVLRFRSSV------------CMVRC--SPRI----VAVG-LATQIYCFDALTLENKFSVLT 229 (765)
Q Consensus 173 ~tV~lWdl-ktg~~v~tL~~~s~V------------~sV~~--s~~~----LaV~-~~~~I~iwD~~t~~~l~tl~t 229 (765)
+.|.-+|. ++|+.+..++..... ..+.+ .... |.++ .++.|+.+|+.|++.++....
T Consensus 73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~ 149 (599)
T 1w6s_A 73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVEN 149 (599)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecC
Confidence 56888999 999999888754311 22344 2222 5554 567899999999999887653
No 265
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=90.19 E-value=10 Score=40.92 Aligned_cols=196 Identities=11% Similarity=0.144 Sum_probs=107.1
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
..+++|+|++++..+..+.-. .+|..=.|=.+. .|+--. ++.|.-|++... ....++++.+.
T Consensus 86 g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT--~taVyHWs~~~~--------------s~P~kvFdR~~ 147 (365)
T 2xzh_A 86 GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT--DNAVYHWSMEGE--------------SQPVKMFDRHS 147 (365)
T ss_dssp TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSS-EEEEEE--SSEEEEEESSTT--------------CCCEEEEECCG
T ss_pred CCeEEEechHHhhhhcceecC-CccEEEEecCCC-eEEEEc--CCcEEEEcccCC--------------CCCceeeecch
Confidence 357999999999887776554 577777775443 343333 346899998421 11245544332
Q ss_pred ccccccEEEEEEccCCCEEEEEeC-------CCcEEEEeCCCCCCCcccccccCCCCCCccccccCCCcccCCCCCccCC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSS-------KGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQ 500 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~-------dgTVhIwdl~~~gg~~~~~~h~~~~~~~~~~p~~~l~~~~~s~~~~~q~ 500 (765)
-.....|..-.-++|.+|++..+- .|.+.||.++. +..+.+.+|... |.++
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~---------------------F~~~ 205 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAAS---------------------FAQF 205 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEE---------------------EEEE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeee---------------------eEEE
Confidence 333457888899999999887753 36788998875 445566777521 1121
Q ss_pred cCC-CCCCeeeeeeeeeeeCCCCcccccccccccccCccccccceeeeecccCcccccccccccc-CccccEEEEcCCcc
Q 004255 501 CVL-PPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRT-NSLEHLLVYTPSGY 578 (765)
Q Consensus 501 ~~~-~~~~~~l~~~~~i~~~~~~w~~~~~~~~~~a~~~~~~p~~~v~~~f~~~~~~~~~~~~~~~-~~~~~Llv~s~~G~ 578 (765)
.++ .+.+..|-..+.- ... |-.=.+-.-....++....+.- ..++|-..-+...-|+-..+ ++-+=+||.|--|+
T Consensus 206 ~~~g~~~~~~lf~fa~r-~~~-g~kLhIiEi~~~~~~~~~f~kk-~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ 282 (365)
T 2xzh_A 206 KMEGNAEESTLFCFAVR-GQA-GGKLHIIEVGTPPTGNQPFPKK-AVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY 282 (365)
T ss_dssp CCTTCSSCEEEEEEEEE-ETT-EEEEEEEECSSCCTTCCCCCCE-EEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSE
T ss_pred ecCCCCCCceEEEEEEe-cCC-CcEEEEEEcCCCCCCCCCcccc-cceeeCCccccCCceEEEEecccCCEEEEEeCCcE
Confidence 121 1222223222211 111 1000000000010111112222 56777665554444432222 44566999999999
Q ss_pred EEEEeccc
Q 004255 579 VVQHELLP 586 (765)
Q Consensus 579 l~~y~l~p 586 (765)
++.|+|..
T Consensus 283 ihlyDleT 290 (365)
T 2xzh_A 283 IHLYDLET 290 (365)
T ss_dssp EEEEETTT
T ss_pred EEEEEccc
Confidence 99999965
No 266
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=90.06 E-value=9.9 Score=42.47 Aligned_cols=196 Identities=11% Similarity=0.147 Sum_probs=106.0
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
..+++|+|++++..+..+.-.. +|..=.|=.+ +.|+--. ++.|.-|++... ....++++.+.
T Consensus 85 g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT--~taVyHWsi~~~--------------s~P~kvFdR~~ 146 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT--DNAVYHWSMEGE--------------SQPVKMFDRHS 146 (494)
T ss_dssp TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC--SSEEEEEESSSS--------------CCCEEEEECCG
T ss_pred CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc--CCeeEEecccCC--------------CCchhheecch
Confidence 4589999999998877765543 5656565333 3444333 356899998421 11245544332
Q ss_pred ccccccEEEEEEccCCCEEEEEeC-------CCcEEEEeCCCCCCCcccccccCCCCCCccccccCCCcccCCCCCccCC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSS-------KGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQ 500 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~-------dgTVhIwdl~~~gg~~~~~~h~~~~~~~~~~p~~~l~~~~~s~~~~~q~ 500 (765)
-..+..|..-.-++|.+|++..+- .|.+.+|.++. +....+.+|... |.++
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~---------------------F~~~ 204 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAAS---------------------FAQF 204 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEE---------------------EEEE
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeee---------------------eEEE
Confidence 233456888999999999986653 46788999875 455667777521 1111
Q ss_pred cCC-CCCCeeeeeeeeeeeCCCCcccccccccccccCccccccceeeeecccCcccccccccccc-CccccEEEEcCCcc
Q 004255 501 CVL-PPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRT-NSLEHLLVYTPSGY 578 (765)
Q Consensus 501 ~~~-~~~~~~l~~~~~i~~~~~~w~~~~~~~~~~a~~~~~~p~~~v~~~f~~~~~~~~~~~~~~~-~~~~~Llv~s~~G~ 578 (765)
.++ .+.|..|-..+. |.. +|..=.+-.-....++....+- ...++|-..-+...-|+...+ ++-+=+||.|--|+
T Consensus 205 ~~~g~~~~~~lf~fa~-r~~-~g~kLhi~Ei~~~~~~~~~f~k-k~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~ 281 (494)
T 1bpo_A 205 KMEGNAEESTLFCFAV-RGQ-AGGKLHIIEVGTPPTGNQPFPK-KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY 281 (494)
T ss_dssp ECTTCSSEEEEEEEEE-CST-TCCEEEEEECSCCCTTCCCCCC-EEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSE
T ss_pred ecCCCCCCceEEEEEE-ecC-CCcEEEEEEcCCCccCCCCccc-eeeeeeCCcccccCceeEEEecccCCEEEEEecCce
Confidence 111 111222222111 111 1100000000011011111222 256777666554444432222 44566999999999
Q ss_pred EEEEeccc
Q 004255 579 VVQHELLP 586 (765)
Q Consensus 579 l~~y~l~p 586 (765)
++.|+|..
T Consensus 282 i~lyDleT 289 (494)
T 1bpo_A 282 IHLYDLET 289 (494)
T ss_dssp EEEEETTT
T ss_pred EEEEeccc
Confidence 99999965
No 267
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=89.87 E-value=2.6 Score=46.81 Aligned_cols=109 Identities=13% Similarity=0.143 Sum_probs=70.1
Q ss_pred CCCeEEEEECCCCcEEEEeccC----CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255 347 NAGIVVVKDFVTRAIISQFKAH----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~aH----~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l 422 (765)
.+..||.-++.....-+.++.- -..|..+..||+|++||..+. +.|.|-.+-.... .... +......+.
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~--~~V~Vv~LP~~~~----~~~~-~~~~~~~q~ 111 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND--NEIFVMEVPWGYS----NVED-VSIQDAFQI 111 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS--SEEEEEECCTTCS----CCCC-HHHHHTTEE
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC--CeEEEEEecCccc----cCcc-cccccccce
Confidence 4568888887754433333322 236788999999999999987 3599998832110 0000 000011233
Q ss_pred EEEecccc----cccEEEEEEccCC---CEEEEEeCCCcEEEEeCCC
Q 004255 423 YKLHRGIT----SATIQDICFSHYS---QWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 423 ~~l~rG~~----~a~I~slaFSpDg---~~Las~S~dgTVhIwdl~~ 462 (765)
+.++-|.. ...|..+-|+|-| ..|++-..|++|++||+..
T Consensus 112 ~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 112 FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp EEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred eEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 34443321 3569999999865 5899999999999999986
No 268
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=89.81 E-value=2.5 Score=49.91 Aligned_cols=30 Identities=7% Similarity=0.035 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCEEEEEEcC--CCEEEEEeCC
Q 004255 371 PISALCFDPSGTLLVTASVY--GNNINIFRIM 400 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~d--Gt~IrVWdi~ 400 (765)
....+.|||||++|+..+.. ...|.++|+.
T Consensus 272 ~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 272 FSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp CEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 45678999999998876643 3356667764
No 269
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=89.56 E-value=50 Score=41.17 Aligned_cols=91 Identities=18% Similarity=0.212 Sum_probs=57.3
Q ss_pred eEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255 350 IVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (765)
Q Consensus 350 ~V~IwDl~s~~~i~~~~aH-~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG 428 (765)
.|++.+...++.+..++.- ...|.+.+.+. .+++.++ |..+.+|++.. + .+.+..+-
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~--g~~l~~fel~~-------~-----------~L~~~~~~ 550 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV--GRALYYLQIHP-------Q-----------ELRQISHT 550 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE--TTEEEEEEEET-------T-----------EEEEEEEE
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE--CCEEEEEEeeC-------C-----------ceeeeccc
Confidence 4566665554455555432 34677777654 4666664 45677888743 2 12222221
Q ss_pred cccccEEEEEEccC------CCEEEEEeC-CCcEEEEeCCC
Q 004255 429 ITSATIQDICFSHY------SQWIAIVSS-KGTCHVFVLSP 462 (765)
Q Consensus 429 ~~~a~I~slaFSpD------g~~Las~S~-dgTVhIwdl~~ 462 (765)
.-...|.|+++.|. ++++|+|.. |++++|+.++.
T Consensus 551 ~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 551 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 12346999999864 479999996 99999999973
No 270
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=89.53 E-value=6.2 Score=39.38 Aligned_cols=95 Identities=6% Similarity=0.021 Sum_probs=59.7
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
.+.|.++|+........+.........|+|++++..|..+......|.++++.. . ....+ +..
T Consensus 57 ~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g--------~-------~~~~~--~~~ 119 (267)
T 1npe_A 57 EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG--------T-------QRRVL--FDT 119 (267)
T ss_dssp TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------C-------SCEEE--ECS
T ss_pred CCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC--------C-------CEEEE--EEC
Confidence 568888998766543334333345689999998777766666566788998732 1 00111 111
Q ss_pred ccccccEEEEEEccCCCEEEEEeC---CCcEEEEeCC
Q 004255 428 GITSATIQDICFSHYSQWIAIVSS---KGTCHVFVLS 461 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~S~---dgTVhIwdl~ 461 (765)
+. .....++|+|++.+|..+.. .+.|..++++
T Consensus 120 ~~--~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 120 GL--VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp SC--SSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred CC--CCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 21 23688999998776655554 3677777765
No 271
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=88.11 E-value=12 Score=40.90 Aligned_cols=72 Identities=11% Similarity=0.053 Sum_probs=44.3
Q ss_pred eEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE-EE
Q 004255 372 ISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA-IV 449 (765)
Q Consensus 372 IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~La-s~ 449 (765)
...++++| +|.++++-.. ...|.+|+... +. ...+..+ +. ...-..|+|+|||++|. +-
T Consensus 228 p~giavdp~~g~lyv~d~~-~~~V~~~~~~~-------~~--------~~~~~~~--~~-~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWN-AGQVFRYDFTT-------QE--------TTPLFTI--QD-SGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp CCCEEECTTTCCEEEEETT-TTEEEEEETTT-------TE--------EEEEEEC--SS-SSCCEEEEECTTSSEEEEEE
T ss_pred ceEEEEeCCCCEEEEEECC-CCEEEEEECCC-------Cc--------EEEEEEc--CC-CCcceeEEEcCCCCEEEEEE
Confidence 35688999 6776665444 45688888742 10 0112221 11 12356899999999554 44
Q ss_pred eCCCcEEEEeCCC
Q 004255 450 SSKGTCHVFVLSP 462 (765)
Q Consensus 450 S~dgTVhIwdl~~ 462 (765)
...+.|+.|+.+.
T Consensus 289 ~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 289 VNQHYILRSDYDW 301 (430)
T ss_dssp TTTTEEEEEEEET
T ss_pred CCCCEEEEEeCCc
Confidence 5678899888764
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=86.61 E-value=37 Score=36.27 Aligned_cols=73 Identities=8% Similarity=-0.004 Sum_probs=43.8
Q ss_pred CCeEEEEECCCCCEEEEEEcCC-CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255 370 SPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (765)
Q Consensus 370 ~~IsaLaFSpdG~lLATaS~dG-t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las 448 (765)
..-..|+++|++..|.-+.... ..|..++.. |. .... ....+. ..-..|+|+|+++.|..
T Consensus 202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--------G~--------~~~~-~~~~~~--~~PnGlavd~~~~~lY~ 262 (386)
T 3v65_B 202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------GS--------GRRI-IADTHL--FWPNGLTIDYAGRRMYW 262 (386)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC--------SCEE-EECSSC--SCEEEEEEEGGGTEEEE
T ss_pred CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--------CC--------CcEE-EEECCC--CCeeeEEEeCCCCEEEE
Confidence 4458899999766666555534 557777652 21 0111 111221 23678999988776655
Q ss_pred E-eCCCcEEEEeCC
Q 004255 449 V-SSKGTCHVFVLS 461 (765)
Q Consensus 449 ~-S~dgTVhIwdl~ 461 (765)
+ +..+.|..++++
T Consensus 263 aD~~~~~I~~~d~d 276 (386)
T 3v65_B 263 VDAKHHVIERANLD 276 (386)
T ss_dssp EETTTTEEEEECTT
T ss_pred EECCCCEEEEEeCC
Confidence 5 455678887765
No 273
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=86.11 E-value=5.4 Score=40.98 Aligned_cols=79 Identities=18% Similarity=0.221 Sum_probs=48.6
Q ss_pred CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 004255 359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC 438 (765)
Q Consensus 359 ~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~sla 438 (765)
.+.+..|..+ .....++|+++|+++++-.. +..|..||.. + .....+..+ .....|+
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~-~~~I~~~d~~--------g----------~~~~~~~~~---~~p~gia 78 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHE-VGEIVSITPD--------G----------NQQIHATVE---GKVSGLA 78 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETT-TTEEEEECTT--------C----------CEEEEEECS---SEEEEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCC-CCeEEEECCC--------C----------ceEEEEeCC---CCceeEE
Confidence 4456667544 34678999999997776545 4557778753 2 122222212 3578999
Q ss_pred EccCCCEEEEEeCCCc--EEEEeC
Q 004255 439 FSHYSQWIAIVSSKGT--CHVFVL 460 (765)
Q Consensus 439 FSpDg~~Las~S~dgT--VhIwdl 460 (765)
|++||+++++...... |..++.
T Consensus 79 ~~~dG~l~vad~~~~~~~v~~~d~ 102 (306)
T 2p4o_A 79 FTSNGDLVATGWNADSIPVVSLVK 102 (306)
T ss_dssp ECTTSCEEEEEECTTSCEEEEEEC
T ss_pred EcCCCcEEEEeccCCcceEEEEcC
Confidence 9999997666544333 444443
No 274
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=85.93 E-value=21 Score=45.35 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=40.9
Q ss_pred CEEEEEECCCCeEEEEEeCCCCEEEEE-ecCCeEEEEeCCeEEEEECCC
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSSVCMVR-CSPRIVAVGLATQIYCFDALT 220 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~V~sV~-~s~~~LaV~~~~~I~iwD~~t 220 (765)
++++|+|+.+.+.+++..++..|.==+ ++++.|+...+..||-|++..
T Consensus 86 ~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~ 134 (1630)
T 1xi4_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 134 (1630)
T ss_pred CeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCC
Confidence 689999999999999999988775444 478999988889999999864
No 275
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=84.49 E-value=43 Score=35.17 Aligned_cols=93 Identities=8% Similarity=-0.058 Sum_probs=52.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-CEEEEEeCCCCcccCCCCCCccccCCcceEEEEE-e
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL-H 426 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG-t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l-~ 426 (765)
+.|.+.|+........+......-..|+++|++..|.-+.... ..|..+++. |. ....+ .
T Consensus 138 ~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--------G~----------~~~~~~~ 199 (349)
T 3v64_C 138 SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------GS----------GRRIIAD 199 (349)
T ss_dssp TEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC----------SCEESCC
T ss_pred CeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--------CC----------CcEEEEE
Confidence 3555666554332222333334568899999666555555434 557777752 21 11111 1
Q ss_pred cccccccEEEEEEccCCCEEEEE-eCCCcEEEEeCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLS 461 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~-S~dgTVhIwdl~ 461 (765)
.+ -..-..|+|+|+++.|..+ +..++|..++++
T Consensus 200 ~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 200 TH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp SS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 11 1236789999887766555 456778888875
No 276
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=84.46 E-value=44 Score=36.37 Aligned_cols=53 Identities=25% Similarity=0.194 Sum_probs=35.5
Q ss_pred CCeEEEEECCCCcEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 004255 348 AGIVVVKDFVTRAIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~a-H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~ 400 (765)
.+.|..+|..++.....+.. ....-..|+|+|+|++|..+....+.|.+|+..
T Consensus 247 ~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 247 AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 45788888876654222221 113357899999999777777767788888763
No 277
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=81.93 E-value=60 Score=34.88 Aligned_cols=95 Identities=16% Similarity=0.085 Sum_probs=55.3
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc-CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~-dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
.+.|.+.|+........+...-.....|+++|.+.+|.-+.. +...|...++. |. .... -+.
T Consensus 180 ~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d--------G~--------~~~~-~~~ 242 (400)
T 3p5b_L 180 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV--------DIYS-LVT 242 (400)
T ss_dssp TTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT--------SC--------SCEE-EEC
T ss_pred CCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC--------CC--------ccEE-EEE
Confidence 346667776655443334333345689999996665555543 22347777762 21 0111 111
Q ss_pred cccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS 461 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~ 461 (765)
.+. ..-..|+|+++++.|..+. ..++|..+|++
T Consensus 243 ~~l--~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 243 ENI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp SSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCC--CceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 121 2468899999888776664 45678888875
No 278
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=81.69 E-value=12 Score=38.31 Aligned_cols=86 Identities=10% Similarity=0.098 Sum_probs=51.8
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
..|.|..||..+++....... -...+.|+|+|+|++|..+......|.+|++.... .+ . ...+.
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~----~~--------~-~~~~~-- 226 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK----KG--------T-AEVLV-- 226 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT----TT--------C-EEEEE--
T ss_pred CCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCc----CC--------c-cceEE--
Confidence 457888999877764332222 12345799999999776665545679999975310 01 0 12221
Q ss_pred cccccccEEEEEEccCCCEEEEEeC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVSS 451 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S~ 451 (765)
. ... ...|++.+||++.++...
T Consensus 227 ~--~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 227 K--IPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp E--CSS-EEEEEECTTSCEEEEEEE
T ss_pred e--CCC-CCCeEECCCCCEEEEecC
Confidence 1 112 577999999986665544
No 279
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=81.53 E-value=87 Score=36.53 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=58.6
Q ss_pred CCCCeEEEEECCCCcEEEEecc--------CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 004255 346 DNAGIVVVKDFVTRAIISQFKA--------HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (765)
Q Consensus 346 ~~dG~V~IwDl~s~~~i~~~~a--------H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~ 417 (765)
..+|-|..||..+++....... ....|.+++.+++|++|..|+.++. +.+||... +
T Consensus 374 t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~G-l~~~d~~~-------~-------- 437 (795)
T 4a2l_A 374 TNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGG-LSILHRNS-------G-------- 437 (795)
T ss_dssp ESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTE-EEEEETTT-------C--------
T ss_pred ECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCc-eeEEeCCC-------C--------
Confidence 3455688888877654332211 2357999999999994445665343 88898754 2
Q ss_pred cceEEEEEec---ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255 418 SHVHLYKLHR---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 418 s~~~l~~l~r---G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~ 462 (765)
....+.. +.....|.++...++|+..+.+ .+| +.+|+...
T Consensus 438 ---~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~ 480 (795)
T 4a2l_A 438 ---QVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQ 480 (795)
T ss_dssp ---CEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTT
T ss_pred ---cEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCC
Confidence 2222221 1122469999999999855443 444 77887653
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=80.32 E-value=72 Score=34.77 Aligned_cols=100 Identities=12% Similarity=0.038 Sum_probs=58.3
Q ss_pred CCCeEEEEECCCCcEEEEe-ccCC-CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 004255 347 NAGIVVVKDFVTRAIISQF-KAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~-~aH~-~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~ 424 (765)
..+.|+.+|..++.....+ .... ..-..|+|+|+|+.|..+....+.|+.++..... +. ....+.
T Consensus 248 ~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~-----~~--------~~~~~~ 314 (433)
T 4hw6_A 248 HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRET-----GK--------LAVPYI 314 (433)
T ss_dssp TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTT-----CC--------BCCCEE
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCC-----cc--------cCcEEE
Confidence 3467888888766653332 2111 2234699999999777777767788888864210 10 000011
Q ss_pred Eec-----cc--------ccccEEEEEE---------ccCCCEEEEEeCCCcEEEEe
Q 004255 425 LHR-----GI--------TSATIQDICF---------SHYSQWIAIVSSKGTCHVFV 459 (765)
Q Consensus 425 l~r-----G~--------~~a~I~slaF---------SpDg~~Las~S~dgTVhIwd 459 (765)
+.. |. .-..-..|+| .++|++.++-+..+.|+.++
T Consensus 315 ~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 315 VCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp EEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred EEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 100 00 0113577999 77887777777778888876
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=79.16 E-value=45 Score=36.43 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=43.7
Q ss_pred eEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE-ecccccccEEEEEEccCCCEEEEE
Q 004255 372 ISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL-HRGITSATIQDICFSHYSQWIAIV 449 (765)
Q Consensus 372 IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l-~rG~~~a~I~slaFSpDg~~Las~ 449 (765)
...++++| +|.+.++-.. .+.|+.+|... | .....+ .-+.. ..-..|+|+|||++|..+
T Consensus 230 P~giavd~~~G~lyv~d~~-~~~V~~~d~~~-------g----------~~~~~~~~~~~~-~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYH-HAMISSYDPAT-------G----------TLTEEEVMMDTK-GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp BCCCEECTTTCCEEECBTT-CSEEEEECTTT-------C----------CEEEEEEECSCC-SSCEEEEECTTSSEEEEE
T ss_pred CCEEEEeCCCCeEEEEECC-CCEEEEEECCC-------C----------eEEEEEeccCCC-CCcccEEEeCCCCEEEEE
Confidence 35688999 7776655433 45588887642 2 111122 21211 223469999999955544
Q ss_pred -eCCCcEEEEeCCCC
Q 004255 450 -SSKGTCHVFVLSPF 463 (765)
Q Consensus 450 -S~dgTVhIwdl~~~ 463 (765)
...+.|+.++++..
T Consensus 291 d~~~~~I~~~~~d~~ 305 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRE 305 (433)
T ss_dssp ETTTTEEEEEEBCTT
T ss_pred eCCCCEEEEEeCCCC
Confidence 55688888887653
No 282
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=78.69 E-value=9.9 Score=40.71 Aligned_cols=98 Identities=15% Similarity=0.151 Sum_probs=64.9
Q ss_pred CCCeEEEEECC---CCcEEEEe--ccCC-----------CCeEEEEECCCCCEEEEEEcCC-CEEEEEeCCCCcccCCCC
Q 004255 347 NAGIVVVKDFV---TRAIISQF--KAHT-----------SPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSG 409 (765)
Q Consensus 347 ~dG~V~IwDl~---s~~~i~~~--~aH~-----------~~IsaLaFSpdG~lLATaS~dG-t~IrVWdi~~~~~~~~sG 409 (765)
.+..|..+|+. +++.+..+ .+.. .....|+.+++|+.-+|.+. + .. ||.+.+. |
T Consensus 98 g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~-~~~~--I~rV~pd------G 168 (334)
T 2p9w_A 98 GASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL-GMPA--IARVSAD------G 168 (334)
T ss_dssp SCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE-SSCE--EEEECTT------S
T ss_pred CCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC-CCCe--EEEEeCC------C
Confidence 35678899998 77655433 2221 24789999999999999998 4 43 4555442 3
Q ss_pred CCccccCCcceEEEEEec--ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 410 NHKYDWNSSHVHLYKLHR--GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 410 ~~~~~~~~s~~~l~~l~r--G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
. ....+.+.. ..+..-...|+++|||+.|++....|.+..||+.
T Consensus 169 ~--------~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 169 K--------TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp C--------CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred C--------EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 1 011122221 1111225689999999998888779999999987
No 283
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=77.52 E-value=4.6 Score=46.70 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=60.9
Q ss_pred eEEEEECCCCcE--EEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 350 IVVVKDFVTRAI--ISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 350 ~V~IwDl~s~~~--i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
.+.+||..+++. +..+. .+.....++++..+|++++.++.++..+.+||..+. .| ..+..+.
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~-----------~W----~~~~~~~ 284 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD-----------SW----IPGPDMQ 284 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT-----------EE----EECCCCS
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCC-----------ce----eECCCCC
Confidence 588999988752 22332 344445678899999999999976777999997541 01 0111111
Q ss_pred cccccccEEEEEEccCCCEEEEEe-CC-----CcEEEEeCCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVS-SK-----GTCHVFVLSP 462 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S-~d-----gTVhIwdl~~ 462 (765)
... .-.++++-+||+.++.|+ .+ .++.+||...
T Consensus 285 ~~R---~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 285 VAR---GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp SCC---SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ccc---cccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 000 012355668999999998 34 5789999865
No 284
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=76.66 E-value=1.3e+02 Score=35.74 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=56.5
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG-t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
.+.|.+.|+........+.........|+++|.+.+|.-+.... ..|.+.++. |. ....+.
T Consensus 492 ~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d--------G~----------~~~~lv 553 (791)
T 3m0c_C 492 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV----------DIYSLV 553 (791)
T ss_dssp TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC----------CEEEEE
T ss_pred CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC--------CC----------ceEEEE
Confidence 45777788765544333433445578999999855555555422 457777762 31 222222
Q ss_pred cccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 004255 427 RGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS 461 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~ 461 (765)
.+ .-.....|++++++.+|..+. ..+.|..++++
T Consensus 554 ~~-~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 554 TE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp CS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred eC-CCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 21 113478899998877776664 44567777764
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=76.58 E-value=84 Score=35.32 Aligned_cols=29 Identities=7% Similarity=-0.020 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFRI 399 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi 399 (765)
.-..|+|+|+|++|..+....+.|+.++.
T Consensus 311 ~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 311 WEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 45789999999977777776788888664
No 286
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=75.67 E-value=1.3e+02 Score=35.12 Aligned_cols=70 Identities=10% Similarity=0.159 Sum_probs=45.3
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE--ecccccccEEEEEEccCCCEE
Q 004255 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL--HRGITSATIQDICFSHYSQWI 446 (765)
Q Consensus 369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l--~rG~~~a~I~slaFSpDg~~L 446 (765)
...|.+|..+++|++.+... +. +..||... + ....+ ..|.....|.++...++|+..
T Consensus 542 ~~~i~~i~~d~~g~lWigT~--~G-l~~~d~~~-------~-----------~~~~~~~~~gl~~~~i~~i~~d~~g~lW 600 (795)
T 4a2l_A 542 KLFTNCIYEASNGIIWVGTR--EG-FYCFNEKD-------K-----------QIKRYNTTNGLPNNVVYGILEDSFGRLW 600 (795)
T ss_dssp GSCEEEEEECTTSCEEEEES--SC-EEEEETTT-------T-----------EEEEECGGGTCSCSCEEEEEECTTSCEE
T ss_pred CCeeEEEEECCCCCEEEEeC--CC-ceeECCCC-------C-----------cEEEeCCCCCCchhheEEEEECCCCCEE
Confidence 45789999999999776543 33 77888643 1 22222 224334469999999999765
Q ss_pred EEEeCCCcEEEEeCC
Q 004255 447 AIVSSKGTCHVFVLS 461 (765)
Q Consensus 447 as~S~dgTVhIwdl~ 461 (765)
+++ .+| +..|+..
T Consensus 601 i~t-~~G-l~~~~~~ 613 (795)
T 4a2l_A 601 LST-NRG-ISCFNPE 613 (795)
T ss_dssp EEE-TTE-EEEEETT
T ss_pred EEc-CCc-eEEEcCC
Confidence 544 455 6667654
No 287
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=75.52 E-value=1.1e+02 Score=34.10 Aligned_cols=77 Identities=25% Similarity=0.423 Sum_probs=49.9
Q ss_pred CCCCeEEEEECCC---CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-----ccc--cccEEEE
Q 004255 368 HTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-----GIT--SATIQDI 437 (765)
Q Consensus 368 H~~~IsaLaFSpd---G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r-----G~~--~a~I~sl 437 (765)
...+|..+-|+|- |..|++=-.|+ +||+||+..... .+. .|.+ |.. ...|.++
T Consensus 123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~-~Ir~yDl~~s~~---------------~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 123 PKSSIKKVLFHPKSYRDSCIVVLKEDD-TITMFDILNSQE---------------KPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp CCCCEEEEEECTTBGGGCEEEEEETTS-CEEEEETTCTTS---------------CCE-EESCCCSEEESCSSCCCEEEE
T ss_pred CCCceeEEEeccccCCCCeEEEEecCC-EEEEEEcccCCC---------------CCc-chhccccccCCCcccceEEEE
Confidence 3678999999994 55677777755 599999964110 111 2211 211 1358999
Q ss_pred EEccCCCEEEEEe--CCCcEEEEeCCCC
Q 004255 438 CFSHYSQWIAIVS--SKGTCHVFVLSPF 463 (765)
Q Consensus 438 aFSpDg~~Las~S--~dgTVhIwdl~~~ 463 (765)
+|+.++-.|-+.+ ..| .||.+-|+
T Consensus 186 ~Fg~~~lTLYvl~~t~~G--DIYAlcP~ 211 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGG--DIFAFYPF 211 (452)
T ss_dssp EECTTSSCEEEEECTTSC--EEEEESSC
T ss_pred EEcCCCcEEEEEecCCCC--CEEEECCC
Confidence 9999987666655 556 57777765
No 288
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=73.87 E-value=43 Score=33.98 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=52.4
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d-Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l 425 (765)
..+.|..||.... ....+.. ......|+|+++|+++++.... +..|..+|... |. ...+..+
T Consensus 51 ~~~~I~~~d~~g~-~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~-------g~--------~~~~~~~ 113 (306)
T 2p4o_A 51 EVGEIVSITPDGN-QQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-------GT--------VETLLTL 113 (306)
T ss_dssp TTTEEEEECTTCC-EEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-------SC--------EEEEEEC
T ss_pred CCCeEEEECCCCc-eEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC-------Ce--------EEEEEeC
Confidence 4577888887653 3333322 2457889999999977655432 22344455432 31 1222222
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~ 461 (765)
. + ......+++.+++..+++-+.++.|.++|..
T Consensus 114 ~-~--~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~ 146 (306)
T 2p4o_A 114 P-D--AIFLNGITPLSDTQYLTADSYRGAIWLIDVV 146 (306)
T ss_dssp T-T--CSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred C-C--ccccCcccccCCCcEEEEECCCCeEEEEeCC
Confidence 1 1 1123556666776656655568877777754
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=73.55 E-value=25 Score=41.17 Aligned_cols=52 Identities=10% Similarity=-0.041 Sum_probs=31.1
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~ 400 (765)
+.|.++++........+...-..-+.|+|+|++..|..+......|.++|+.
T Consensus 519 ~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 519 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp CCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred CeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence 5666666543222111212223346799999877776666656778888873
No 290
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=72.54 E-value=13 Score=39.93 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=57.6
Q ss_pred CCeEEEEECCCC-c---EEEEeccC-CCCeEEEEECCCCCEEEEEEcC--------------CCEEEEEeCCCCcccCCC
Q 004255 348 AGIVVVKDFVTR-A---IISQFKAH-TSPISALCFDPSGTLLVTASVY--------------GNNINIFRIMPSCMRSGS 408 (765)
Q Consensus 348 dG~V~IwDl~s~-~---~i~~~~aH-~~~IsaLaFSpdG~lLATaS~d--------------Gt~IrVWdi~~~~~~~~s 408 (765)
...|.||++... + .+.++.+. -...+.++++++|++.+|...- ...=+||.+.+
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~------- 210 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP------- 210 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-------
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-------
Confidence 457777776543 2 33344433 2357899999999999886520 01124444432
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCC
Q 004255 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFG 464 (765)
Q Consensus 409 G~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~-S~dgTVhIwdl~~~g 464 (765)
+ .+..+..+.. .-..|+||||+++|..+ +..++|+.|++...+
T Consensus 211 ~-----------~~~~~~~~l~--~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g 254 (355)
T 3sre_A 211 N-----------DVRVVAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANW 254 (355)
T ss_dssp T-----------CCEEEEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred C-----------eEEEeecCCc--ccCcceECCCCCEEEEEeCCCCeEEEEEECCCC
Confidence 1 0111222221 24789999999877665 467899999998543
No 291
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=72.03 E-value=90 Score=31.74 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=47.9
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-----ccEEEEEEccCCC
Q 004255 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----ATIQDICFSHYSQ 444 (765)
Q Consensus 370 ~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~-----a~I~slaFSpDg~ 444 (765)
..+++|+|+|.-..|..-|...+.+-++|.. | .....+.|.+|.+. ..--.|+|.++|+
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--------g--------~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLV--------G--------EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTT--------C--------CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCC--------C--------CEEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 3468899999655555556667888888863 2 12445566665422 1356899999998
Q ss_pred EEEEEeCCCcEEEEe
Q 004255 445 WIAIVSSKGTCHVFV 459 (765)
Q Consensus 445 ~Las~S~dgTVhIwd 459 (765)
|.++|.-+-+.+|.
T Consensus 237 -lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 237 -IYIVSEPNRFYRFT 250 (255)
T ss_dssp -EEEEETTTEEEEEE
T ss_pred -EEEEcCCceEEEEE
Confidence 55567777555553
No 292
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=71.51 E-value=32 Score=35.10 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=55.1
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-cccccccEEEEEEccC
Q 004255 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATIQDICFSHY 442 (765)
Q Consensus 364 ~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~-rG~~~a~I~slaFSpD 442 (765)
.+.+-...++.|+|+|++..|.+.+.....|-..|.. | ..+.++. .|. ...-.|++.++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--------g----------~v~~~i~l~g~--~D~EGIa~~~~ 80 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--------G----------DLIRTIPLDFV--KDLETIEYIGD 80 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT--------C----------CEEEEEECSSC--SSEEEEEECST
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--------C----------CEEEEEecCCC--CChHHeEEeCC
Confidence 4555567899999999877777666545445555652 2 2333332 222 24678899999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCC
Q 004255 443 SQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 443 g~~Las~S~dgTVhIwdl~~~gg 465 (765)
++++++.-.++.+.+|++...+.
T Consensus 81 g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 81 NQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp TEEEEEETTTTEEEEEEECTTCC
T ss_pred CEEEEEECCCCcEEEEEcCCCCe
Confidence 98777666778899999987653
No 293
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=65.61 E-value=32 Score=43.84 Aligned_cols=106 Identities=10% Similarity=0.202 Sum_probs=65.5
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~ 426 (765)
..+++|||+.++..+..+.-. .+|..=.|=.+.+ -|+| ++.|--|++... +.+.++++.+
T Consensus 85 g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~l~lVT----~~aVyHW~~~~~--------------s~P~k~fdR~ 145 (1630)
T 1xi4_A 85 GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT----DNAVYHWSMEGE--------------SQPVKMFDRH 145 (1630)
T ss_pred CCeEEEeehHHhhhhcccccC-CCceEEEecCCCeeEEEc----CCeEEEeccCCC--------------CccHHHHhcc
Confidence 458999999988766655443 4676666643333 3444 345899998421 0112333322
Q ss_pred cccccccEEEEEEccCCCEEEEEe-------CCCcEEEEeCCCCCCCccccccc
Q 004255 427 RGITSATIQDICFSHYSQWIAIVS-------SKGTCHVFVLSPFGGDSGFQTLS 473 (765)
Q Consensus 427 rG~~~a~I~slaFSpDg~~Las~S-------~dgTVhIwdl~~~gg~~~~~~h~ 473 (765)
.-..+..|.+-.-++|.+|++..+ -.|.+.+|.++. +....+.+|.
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha 198 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA 198 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhH
Confidence 112235688888899999988654 357888998875 4455667775
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=65.35 E-value=1.3e+02 Score=31.08 Aligned_cols=94 Identities=13% Similarity=0.040 Sum_probs=52.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc-CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (765)
Q Consensus 349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~-dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r 427 (765)
+.|.++|+........+......-..|+++|.+.+|.-+.. ....|..++.. |. .... -+..
T Consensus 101 ~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--------G~--------~~~~-~~~~ 163 (318)
T 3sov_A 101 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--------GS--------SRFI-IINS 163 (318)
T ss_dssp TEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--------SC--------SCEE-EECS
T ss_pred CEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--------CC--------CeEE-EEEC
Confidence 45666666543322222233345588999997555555553 23456666652 21 0111 1111
Q ss_pred ccccccEEEEEEccCCCEEEEE-eCCCcEEEEeCC
Q 004255 428 GITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLS 461 (765)
Q Consensus 428 G~~~a~I~slaFSpDg~~Las~-S~dgTVhIwdl~ 461 (765)
+. ..-..|+|+++++.|..+ +..+.|..++++
T Consensus 164 ~l--~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 164 EI--YWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp SC--SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CC--CCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 21 235789999987766555 456778888875
No 295
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=65.31 E-value=17 Score=41.99 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=23.5
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEE
Q 004255 421 HLYKLHRGITSATIQDICFSHYSQWIAIV 449 (765)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~Las~ 449 (765)
.++.|.++...+.++.++|+||++.|.+.
T Consensus 520 ~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 520 EIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 56777777777899999999999877553
No 296
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=54.25 E-value=1.7e+02 Score=28.95 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=29.3
Q ss_pred CEEEEEECCCCe---EEEEEeCCC---CEEEEEecCCeEEEEe------CCeEEEEECCCCc
Q 004255 173 TAVRFYSFQSHC---YEHVLRFRS---SVCMVRCSPRIVAVGL------ATQIYCFDALTLE 222 (765)
Q Consensus 173 ~tV~lWdlktg~---~v~tL~~~s---~V~sV~~s~~~LaV~~------~~~I~iwD~~t~~ 222 (765)
+.+.+||+.+++ -...-..+. .-..+.++.++++.|. .+.+++||+.+.+
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp CCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 578999998876 332222221 2234445666666653 2358888887764
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=53.84 E-value=3.4e+02 Score=32.15 Aligned_cols=50 Identities=10% Similarity=-0.031 Sum_probs=32.1
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (765)
Q Consensus 350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi 399 (765)
.|.+.++........+...-..-+.|++++.+..|.-+......|.++++
T Consensus 538 ~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~ 587 (791)
T 3m0c_C 538 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 587 (791)
T ss_dssp EEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred eEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 45555554333222233333467889999888888888776677888887
No 298
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=52.79 E-value=2.3e+02 Score=29.90 Aligned_cols=71 Identities=11% Similarity=-0.035 Sum_probs=42.9
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 004255 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (765)
Q Consensus 370 ~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~ 449 (765)
..-+.|+|+|++..|.-+....+.|..+|+. |. .+.. -+..+ ......|++ .++..+.+-
T Consensus 246 ~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d--------G~--------~~~~-~~~~~--~~~P~giav-~~~~ly~td 305 (386)
T 3v65_B 246 FWPNGLTIDYAGRRMYWVDAKHHVIERANLD--------GS--------HRKA-VISQG--LPHPFAITV-FEDSLYWTD 305 (386)
T ss_dssp SCEEEEEEEGGGTEEEEEETTTTEEEEECTT--------SC--------SCEE-EECSS--CSSEEEEEE-ETTEEEEEE
T ss_pred CCeeeEEEeCCCCEEEEEECCCCEEEEEeCC--------CC--------eeEE-EEECC--CCCceEEEE-ECCEEEEee
Confidence 3457899999888887777767778888873 21 0111 12112 123577888 344444555
Q ss_pred eCCCcEEEEeC
Q 004255 450 SSKGTCHVFVL 460 (765)
Q Consensus 450 S~dgTVhIwdl 460 (765)
...+.|..++.
T Consensus 306 ~~~~~V~~~~~ 316 (386)
T 3v65_B 306 WHTKSINSANK 316 (386)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCeEEEEEC
Confidence 56677777663
No 299
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=51.68 E-value=93 Score=33.15 Aligned_cols=102 Identities=13% Similarity=0.105 Sum_probs=62.6
Q ss_pred CCCeEEEEECCCCcEEE-Eecc----CCC--CeEEEEE---CCCCCEEEEEEc------------CCCEEEEEeCC---C
Q 004255 347 NAGIVVVKDFVTRAIIS-QFKA----HTS--PISALCF---DPSGTLLVTASV------------YGNNINIFRIM---P 401 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~-~~~a----H~~--~IsaLaF---SpdG~lLATaS~------------dGt~IrVWdi~---~ 401 (765)
..|+|..||...+.... .+.. ... .++.|.| +|+|++|+.+.. ....+..||+. +
T Consensus 33 ~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~t 112 (334)
T 2p9w_A 33 YKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSEN 112 (334)
T ss_dssp TTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTT
T ss_pred cCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCC
Confidence 56899999987654333 3332 111 3578999 799988886431 13458888985 2
Q ss_pred CcccCCCCCCccccCCcceEEEEEec---------ccccccEEEEEEccCCCEEEEEeCC-CcEEEEeCCCCCC
Q 004255 402 SCMRSGSGNHKYDWNSSHVHLYKLHR---------GITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGG 465 (765)
Q Consensus 402 ~~~~~~sG~~~~~~~~s~~~l~~l~r---------G~~~a~I~slaFSpDg~~Las~S~d-gTVhIwdl~~~gg 465 (765)
+. ......|.. |.......+++..++|+.-++.+.- +. ||.+++.|.
T Consensus 113 -------g~--------~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~rV~pdG~ 169 (334)
T 2p9w_A 113 -------SK--------PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IARVSADGK 169 (334)
T ss_dssp -------CC--------CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEEECTTSC
T ss_pred -------CC--------EEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEEEeCCCC
Confidence 21 011122210 1011247899999999988888877 65 667776554
No 300
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=50.67 E-value=2.2e+02 Score=29.01 Aligned_cols=75 Identities=7% Similarity=-0.110 Sum_probs=44.9
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 004255 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (765)
Q Consensus 370 ~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~ 449 (765)
..-+.|+|+|++..|..+....+.|.++|+. |. ..+.+.. .+.....-..|++. .+..+.+-
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d--------g~-------~~~~~~~--~~~~~~~P~giav~-~~~ly~~d 225 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVN--------GG-------NRKTILE--DEKRLAHPFSLAVF-EDKVFWTD 225 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT--------SC-------SCEEEEE--CTTTTSSEEEEEEE-TTEEEEEE
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecC--------CC-------ceEEEee--cCCccCCcEEEEEE-CCEEEEEE
Confidence 3467899999888887777766779999973 21 0012211 11111235678884 34455555
Q ss_pred eCCCcEEEEeCCC
Q 004255 450 SSKGTCHVFVLSP 462 (765)
Q Consensus 450 S~dgTVhIwdl~~ 462 (765)
...+.|..++...
T Consensus 226 ~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 226 IINEAIFSANRLT 238 (316)
T ss_dssp TTTTEEEEEETTT
T ss_pred CCCCeEEEEeCCC
Confidence 5667777777543
No 301
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=50.22 E-value=3.3e+02 Score=31.01 Aligned_cols=183 Identities=13% Similarity=0.021 Sum_probs=0.0
Q ss_pred CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC--eEEEEEeCCCCEEEEEecC--CeEE
Q 004255 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--CYEHVLRFRSSVCMVRCSP--RIVA 206 (765)
Q Consensus 131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg--~~v~tL~~~s~V~sV~~s~--~~La 206 (765)
|||+..-. +.|+..|+... +....+..-..+.+|++++ +.|.
T Consensus 10 ~~~~~~~~----------------------------------~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly 55 (619)
T 3s94_A 10 PLLLYANR----------------------------------RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIY 55 (619)
T ss_dssp CCEEEECS----------------------------------SBEEEECCC---------CBCCSCEEEEEEETTTTEEE
T ss_pred ceEEEecc----------------------------------ccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEE
Q ss_pred EEe--CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCC
Q 004255 207 VGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (765)
Q Consensus 207 V~~--~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~ 282 (765)
++. .++|+.+++.......++...... ...-+|+.. +.|-.+.
T Consensus 56 ~sD~~~~~I~r~~~~g~~~~~~v~~~~~~------------~P~GlAvD~~~~~ly~~d--------------------- 102 (619)
T 3s94_A 56 WSDVSEEAIKRTEFNKTESVQNVVVSGLL------------SPDGLACDWLGEKLYWTD--------------------- 102 (619)
T ss_dssp EEETTTTEEEEEEC-----CEEEECSSCS------------CEEEEEEETTTTEEEEEE---------------------
T ss_pred EEECCCCeEEEEEccCCCceEEEEeCCCC------------CcCeEEEEecCCEEEEEe---------------------
Q ss_pred CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE
Q 004255 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (765)
Q Consensus 283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i 362 (765)
...+.|.+.|+......
T Consensus 103 ---------------------------------------------------------------~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 103 ---------------------------------------------------------------SETNRIEVSNLDGSLRK 119 (619)
T ss_dssp ---------------------------------------------------------------TTTTEEEEEETTSCSCE
T ss_pred ---------------------------------------------------------------CCCCEEEEEECCCCCEE
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-
Q 004255 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH- 441 (765)
Q Consensus 363 ~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp- 441 (765)
..+...-..-..|+++|.+.+|.-+.. |..-+||..... | .....+-.. .-..-..|++++
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~-g~~~~I~r~~~d------G----------~~~~~l~~~-~~~~P~Glald~~ 181 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDW-GEVPKIERAGMD------G----------SSRFIIINS-EIYWPNGLTLDYE 181 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEEC-SSSCEEEEEETT------S----------CSCEEEECS-SCSSEEEEEEETT
T ss_pred EEEeCCCCCCceEEEecCCCeEEEecc-CCCCEEEEEECC------C----------CceEEEEeC-CCCCCcEEEEEcc
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 004255 442 YSQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 442 Dg~~Las~S~dgTVhIwdl~ 461 (765)
+++...+-+..++|..++++
T Consensus 182 ~~~LY~aD~~~~~I~~~~~d 201 (619)
T 3s94_A 182 EQKLYWADAKLNFIHKSNLD 201 (619)
T ss_dssp TTEEEEEETTTCCEEEESSS
T ss_pred CCEEEEEeCCCCeEEEecCC
No 302
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=46.97 E-value=2.3e+02 Score=28.30 Aligned_cols=50 Identities=12% Similarity=0.237 Sum_probs=28.6
Q ss_pred CEEEEEECCCCeEEEEEeCCC---CEEEEEecCCeEEEEeC----------CeEEEEECCCCc
Q 004255 173 TAVRFYSFQSHCYEHVLRFRS---SVCMVRCSPRIVAVGLA----------TQIYCFDALTLE 222 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s---~V~sV~~s~~~LaV~~~----------~~I~iwD~~t~~ 222 (765)
+.+.+||..+++-...-..+. .-..+.++.++++.|.. +.+++||+.+.+
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 468999999887543322222 12233445566655432 247888887653
No 303
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=46.55 E-value=80 Score=33.76 Aligned_cols=51 Identities=10% Similarity=0.132 Sum_probs=33.5
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (765)
Q Consensus 348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~ 401 (765)
.|.|.-+|.. ++.....+ -.--+.|+|||||+.|..+......|.+|++..
T Consensus 202 ~g~vyr~d~~--~~~~~~~~-l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 202 WSFVTYYSPN--DVRVVAEG-FDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp CEEEEEECTT--CCEEEEEE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ccEEEEEECC--eEEEeecC-CcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 3556666653 22212222 234588999999998888877677899999853
No 304
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=46.36 E-value=1.9e+02 Score=31.19 Aligned_cols=109 Identities=10% Similarity=0.146 Sum_probs=62.4
Q ss_pred CeEEEEECCCC--cEEEEecc------CCCCeEEEEEC---CC----CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 004255 349 GIVVVKDFVTR--AIISQFKA------HTSPISALCFD---PS----GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (765)
Q Consensus 349 G~V~IwDl~s~--~~i~~~~a------H~~~IsaLaFS---pd----G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~ 413 (765)
-.+.+||+.+. ++++.+.- ..+-+..|+++ |+ +.+..-+...+.-|-|+|+.......-.. .+.
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~-~~~ 201 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTH-PTF 201 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEEC-GGG
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEcc-CCC
Confidence 47889999999 88887642 13568889998 32 44555555445678999997621100000 000
Q ss_pred ccCCcceEEEEEecccc---cccEEEEEEccC----CCEEEEEeCCCcEEEEeCCC
Q 004255 414 DWNSSHVHLYKLHRGIT---SATIQDICFSHY----SQWIAIVSSKGTCHVFVLSP 462 (765)
Q Consensus 414 ~~~~s~~~l~~l~rG~~---~a~I~slaFSpD----g~~Las~S~dgTVhIwdl~~ 462 (765)
..+ ..-.+.. .|.. ...|..|++||| +++|.-....++ ++|.+.+
T Consensus 202 ~pd--~~~~~~i-~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T 253 (381)
T 3q6k_A 202 KAE--RPTKFDY-GGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNT 253 (381)
T ss_dssp SCC--SCEEEEE-TTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEH
T ss_pred ccc--cCcceEE-CCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEH
Confidence 000 0001111 0110 124888999998 788877776664 6777764
No 305
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=45.32 E-value=1.6e+02 Score=30.30 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=46.1
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 004255 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (765)
Q Consensus 367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L 446 (765)
.+...+.+++|+|+|++++.+.. |...+-+|-. |. . ... +..+ ....+.+++++++++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~-G~~~~S~d~g--------G~-------t-W~~--~~~~-~~~~~~~~~~~~~g~~~ 219 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSR-GSFYSTWEPG--------QT-------A-WEP--HNRT-TSRRLHNMGFTPDGRLW 219 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETT-SSEEEEECTT--------CS-------S-CEE--EECC-SSSCEEEEEECTTSCEE
T ss_pred CCCcceEEEEEcCCCcEEEEECC-CcEEEEeCCC--------CC-------c-eeE--CCCC-CCCccceeEECCCCCEE
Confidence 45567899999999999887654 7766655520 10 0 111 1222 23458899999999866
Q ss_pred EEEeCCCcEEEEe
Q 004255 447 AIVSSKGTCHVFV 459 (765)
Q Consensus 447 as~S~dgTVhIwd 459 (765)
+ ++.+|.+.+.+
T Consensus 220 ~-~~~~G~~~~s~ 231 (327)
T 2xbg_A 220 M-IVNGGKIAFSD 231 (327)
T ss_dssp E-EETTTEEEEEE
T ss_pred E-EeCCceEEEec
Confidence 4 45678776653
No 306
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=43.28 E-value=66 Score=36.96 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=38.1
Q ss_pred eEEEEECCCCCEEEEEEcC-C--------CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255 372 ISALCFDPSGTLLVTASVY-G--------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (765)
Q Consensus 372 IsaLaFSpdG~lLATaS~d-G--------t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD 442 (765)
-.-|+|+++|.+.+.-.-. + ..-.||-+.+. .| .+..+..+...+.++.++||||
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~-----tG-----------el~~fl~~P~~aEpnGiafSPD 541 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPA-----TG-----------EIRRFMVGPIGCEVTGISFSPD 541 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTT-----TC-----------CEEEEEECCTTCEEEEEEECTT
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCC-----CC-----------eEEEEEeCCCCccccCCEECCC
Confidence 4579999999988733210 0 00145544331 12 3444544444467999999999
Q ss_pred CCEEEEE
Q 004255 443 SQWIAIV 449 (765)
Q Consensus 443 g~~Las~ 449 (765)
++.|.++
T Consensus 542 ~ktLfV~ 548 (592)
T 4a9v_A 542 QKTLFVG 548 (592)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 9988765
No 307
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=42.81 E-value=1e+02 Score=33.88 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=36.8
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc----ccccEEEEEEccC---C
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI----TSATIQDICFSHY---S 443 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~----~~a~I~slaFSpD---g 443 (765)
.-..|+|.|+|++|++-.. |..|++++... |. ...+..+.... ...-+..|+|+|| +
T Consensus 28 ~P~~~a~~pdG~l~V~e~~-gg~I~~~~~~~-------g~--------~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~ 91 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERA-TGKILRVNPES-------GS--------VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN 91 (454)
T ss_dssp SEEEEEECTTSCEEEEETT-TCEEEEECTTT-------CC--------EEEEEECTTCCCCTTSSCSEEEEEECTTTTTS
T ss_pred CceEEEEcCCCcEEEEEcC-CCEEEEEECCC-------Cc--------EeEEecCCccccccCCCCceeEEEECCCcCcC
Confidence 3468999999998887543 55466665421 21 12222332111 1224779999996 5
Q ss_pred CEEEEEe
Q 004255 444 QWIAIVS 450 (765)
Q Consensus 444 ~~Las~S 450 (765)
.+|.++.
T Consensus 92 g~lYv~~ 98 (454)
T 1cru_A 92 PYIYISG 98 (454)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 5655544
No 308
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=41.55 E-value=2.8e+02 Score=27.57 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=30.9
Q ss_pred CEEEEEECCCCeEEEEEeCCC---CEEEEEecCCeEEEEeC-------CeEEEEECCCCc
Q 004255 173 TAVRFYSFQSHCYEHVLRFRS---SVCMVRCSPRIVAVGLA-------TQIYCFDALTLE 222 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s---~V~sV~~s~~~LaV~~~-------~~I~iwD~~t~~ 222 (765)
+.+.+||+.+++-...-..+. .-..+.++.+++++|.. +.+++||..+.+
T Consensus 70 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 70 KRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp CEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred ceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 579999999987544333332 22344456666666532 248888888764
No 309
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=41.12 E-value=3.5e+02 Score=28.67 Aligned_cols=73 Identities=7% Similarity=-0.131 Sum_probs=43.8
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc-cccccEEEEEEccCCCEEEE
Q 004255 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG-ITSATIQDICFSHYSQWIAI 448 (765)
Q Consensus 370 ~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG-~~~a~I~slaFSpDg~~Las 448 (765)
..-+.|+|++++..|.-+......|..+|+. |. ....+..+ .....-..|++. .+..+.+
T Consensus 246 ~~P~glavd~~~~~lY~aD~~~~~I~~~d~d--------G~----------~~~~~~~~~~~l~~P~gl~v~-~~~lywt 306 (400)
T 3p5b_L 246 QWPNGITLDLLSGRLYWVDSKLHSISSIDVN--------GG----------NRKTILEDEKRLAHPFSLAVF-EDKVFWT 306 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT--------SC----------CCEEEEECSSTTSSEEEEEEE-TTEEEEE
T ss_pred CceEEEEEEeCCCEEEEEECCCCEEEEEeCC--------CC----------ccEEEEeCCCCCCCCEEEEEe-CCEEEEe
Confidence 4568899999888888888767789998873 21 11122111 111234567773 2334445
Q ss_pred EeCCCcEEEEeCC
Q 004255 449 VSSKGTCHVFVLS 461 (765)
Q Consensus 449 ~S~dgTVhIwdl~ 461 (765)
-...+.|..++..
T Consensus 307 d~~~~~V~~~~~~ 319 (400)
T 3p5b_L 307 DIINEAIFSANRL 319 (400)
T ss_dssp ESSSCSEEEEESS
T ss_pred cCCCCeEEEEEcC
Confidence 5566777777743
No 310
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=40.82 E-value=3.2e+02 Score=28.07 Aligned_cols=72 Identities=13% Similarity=-0.090 Sum_probs=43.6
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S 450 (765)
.-+.|+|+|++..|.-+......|..+|+. |. .+. .+..+. ...-..|++..+ ..+.+-.
T Consensus 167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~d--------G~--------~~~--~~~~~~-~~~P~glav~~~-~lywtd~ 226 (318)
T 3sov_A 167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLD--------GT--------NRQ--AVVKGS-LPHPFALTLFED-ILYWTDW 226 (318)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT--------SC--------SCE--EEECSC-CSCEEEEEEETT-EEEEEET
T ss_pred CccEEEEeccCCEEEEEECCCCEEEEEcCC--------CC--------ceE--EEecCC-CCCceEEEEeCC-EEEEEec
Confidence 347899999888887777767778888873 21 012 122221 123567777543 3444455
Q ss_pred CCCcEEEEeCCC
Q 004255 451 SKGTCHVFVLSP 462 (765)
Q Consensus 451 ~dgTVhIwdl~~ 462 (765)
..+.|..++...
T Consensus 227 ~~~~V~~~~~~~ 238 (318)
T 3sov_A 227 STHSILACNKYT 238 (318)
T ss_dssp TTTEEEEEETTT
T ss_pred CCCeEEEEECCC
Confidence 567777777643
No 311
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=40.35 E-value=4.8e+02 Score=30.02 Aligned_cols=51 Identities=8% Similarity=0.136 Sum_probs=34.5
Q ss_pred CEEEEEECCCCeEEEEEe---CCCCEEEEEecC-CeEEEEeCCeEEEEECCCCce
Q 004255 173 TAVRFYSFQSHCYEHVLR---FRSSVCMVRCSP-RIVAVGLATQIYCFDALTLEN 223 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~---~~s~V~sV~~s~-~~LaV~~~~~I~iwD~~t~~~ 223 (765)
+-|..||.++++..+... ....|++|...+ ..|-+|..+.|++||..+.+.
T Consensus 427 ~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 427 GNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKV 481 (781)
T ss_dssp EEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESSSSSC
T ss_pred CCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCCCCeE
Confidence 357788887776443221 135789998875 566666668899999887653
No 312
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=39.28 E-value=5e+02 Score=29.89 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=45.4
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe--cccccccEEEEEEccCCCEE
Q 004255 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH--RGITSATIQDICFSHYSQWI 446 (765)
Q Consensus 369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~--rG~~~a~I~slaFSpDg~~L 446 (765)
...|.+|..+++|++.+.... +. +..||... + .+..+. .|.....|.+|...++|+..
T Consensus 494 ~~~i~~i~~d~~g~lWigt~~-~G-l~~~~~~~-------~-----------~~~~~~~~~~l~~~~i~~i~~d~~g~lW 553 (781)
T 3v9f_A 494 ENFVRSIAQDSEGRFWIGTFG-GG-VGIYTPDM-------Q-----------LVRKFNQYEGFCSNTINQIYRSSKGQMW 553 (781)
T ss_dssp CSCEEEEEECTTCCEEEEESS-SC-EEEECTTC-------C-----------EEEEECTTTTCSCSCEEEEEECTTSCEE
T ss_pred cceeEEEEEcCCCCEEEEEcC-CC-EEEEeCCC-------C-----------eEEEccCCCCCCCCeeEEEEECCCCCEE
Confidence 357899999999998765433 33 66687633 1 222232 23333469999999999855
Q ss_pred EEEeCCCcEEEEeCC
Q 004255 447 AIVSSKGTCHVFVLS 461 (765)
Q Consensus 447 as~S~dgTVhIwdl~ 461 (765)
++ +.+|-+..||..
T Consensus 554 i~-T~~Glv~~~d~~ 567 (781)
T 3v9f_A 554 LA-TGEGLVCFPSAR 567 (781)
T ss_dssp EE-ETTEEEEESCTT
T ss_pred EE-ECCCceEEECCC
Confidence 44 447754666654
No 313
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=39.02 E-value=1.1e+02 Score=32.12 Aligned_cols=89 Identities=10% Similarity=0.040 Sum_probs=45.2
Q ss_pred CCCeEEEEECCCCc--EEEEec---cCCCCeEEEEECCC----CCEEEEEEcCC----CEEEEEeCCCCcccCCCCCCcc
Q 004255 347 NAGIVVVKDFVTRA--IISQFK---AHTSPISALCFDPS----GTLLVTASVYG----NNINIFRIMPSCMRSGSGNHKY 413 (765)
Q Consensus 347 ~dG~V~IwDl~s~~--~i~~~~---aH~~~IsaLaFSpd----G~lLATaS~dG----t~IrVWdi~~~~~~~~sG~~~~ 413 (765)
..|.|.+++ +++ .+..+. .-......|+|+|+ |.+.++-+..+ +.|..|+... +.
T Consensus 49 ~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~-------~~--- 116 (352)
T 2ism_A 49 RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLG-------ER--- 116 (352)
T ss_dssp TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECS-------SC---
T ss_pred CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCC-------CC---
Confidence 348888888 333 222222 12346789999998 55555544321 3466666532 10
Q ss_pred ccCCcceEEEE-Ee--cccccccEEEEEEccCCCEEEEEe
Q 004255 414 DWNSSHVHLYK-LH--RGITSATIQDICFSHYSQWIAIVS 450 (765)
Q Consensus 414 ~~~~s~~~l~~-l~--rG~~~a~I~slaFSpDg~~Las~S 450 (765)
+. ..+.+.+ +. .+. ...-..|+|.|||...++.+
T Consensus 117 -~~-~~~~l~~~~p~~~~~-~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 117 -GV-LDRVVLDGIPARPHG-LHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp -EE-EEEEEEEEECCCTTC-CCCCCCEEECTTSCEEEECC
T ss_pred -cC-ceEEEEEeCCCCCCC-CcCCceEEECCCCCEEEEEC
Confidence 00 0122222 32 111 11235799999997655544
No 314
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=38.72 E-value=1.3e+02 Score=31.66 Aligned_cols=93 Identities=15% Similarity=0.133 Sum_probs=46.3
Q ss_pred CCCeEEEEECCCCc-EEEEec---cCCCCeEEEEECCC----CCEEEEEEc---CC---CEEEEEeCCCCcccCCCCCCc
Q 004255 347 NAGIVVVKDFVTRA-IISQFK---AHTSPISALCFDPS----GTLLVTASV---YG---NNINIFRIMPSCMRSGSGNHK 412 (765)
Q Consensus 347 ~dG~V~IwDl~s~~-~i~~~~---aH~~~IsaLaFSpd----G~lLATaS~---dG---t~IrVWdi~~~~~~~~sG~~~ 412 (765)
.+|.|+++| .+++ .+..+. .-......|+|+|+ |.+.++-+. ++ +.|..|+.... .+.
T Consensus 47 ~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~-----~~~-- 118 (354)
T 3a9g_A 47 RPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGS-----TFK-- 118 (354)
T ss_dssp TTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSS-----SCC--
T ss_pred CCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCC-----CcC--
Confidence 348888887 3443 333322 12345789999997 655555442 11 34555654321 000
Q ss_pred cccCCcceEEEE-EecccccccEEEEEEccCCCEEEEEeC
Q 004255 413 YDWNSSHVHLYK-LHRGITSATIQDICFSHYSQWIAIVSS 451 (765)
Q Consensus 413 ~~~~~s~~~l~~-l~rG~~~a~I~slaFSpDg~~Las~S~ 451 (765)
+. ..+.+.. +..+. ...-..|+|.|||++.++.++
T Consensus 119 --~~-~~~~l~~~~~~~~-~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 119 --LK-EVKTLIDGIPGAY-IHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp --EE-EEEEEEEEEECCS-SCCCCCEEECTTSCEEEECCC
T ss_pred --cC-ccEEEEEcCCCCC-CcCCceEEECCCCcEEEEECC
Confidence 00 0122222 22111 112357999999986665443
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=37.46 E-value=3.1e+02 Score=27.01 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=29.4
Q ss_pred CEEEEEECCCCeEEEEEeCCC---CEEEEEecCCeEEEEeC------CeEEEEECCCCc
Q 004255 173 TAVRFYSFQSHCYEHVLRFRS---SVCMVRCSPRIVAVGLA------TQIYCFDALTLE 222 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s---~V~sV~~s~~~LaV~~~------~~I~iwD~~t~~ 222 (765)
..+..||+.+++-...-..+. ....+..+.++++.|.. +.+++||..+.+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 468899999886443222222 22334455566665442 248888887765
No 316
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=36.81 E-value=71 Score=35.90 Aligned_cols=80 Identities=10% Similarity=0.042 Sum_probs=43.9
Q ss_pred EEEEECCCCCEEEEEEcCCCEEEEEeCC-------CCcccCCCCCC-c--cccC-CcceEEEEEecccccccEEEEEEcc
Q 004255 373 SALCFDPSGTLLVTASVYGNNINIFRIM-------PSCMRSGSGNH-K--YDWN-SSHVHLYKLHRGITSATIQDICFSH 441 (765)
Q Consensus 373 saLaFSpdG~lLATaS~dGt~IrVWdi~-------~~~~~~~sG~~-~--~~~~-~s~~~l~~l~rG~~~a~I~slaFSp 441 (765)
..++++|++..|..+......|.++|+. . +.. . ..+. .....++.+ + ....-+.|+|+|
T Consensus 250 ~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~t-------g~~~tp~~~~~~g~~~~l~~~--~-~~~~p~~ia~~p 319 (496)
T 3kya_A 250 NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN-------GGSWDPIVKNNPNTFKQLFTI--A-DPSWEFQIFIHP 319 (496)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHT-------TCCCCCBGGGCTTTEEEEEEC--S-SSSCCEEEEECT
T ss_pred eEEEEcCCCCeEEEEECCCCEEEEEecccccccccC-------ceeecccccccccccceeEec--C-CCCCceEEEEcC
Confidence 4678999544444445445568888875 2 110 0 0000 001133332 2 123357899999
Q ss_pred CCCEE-EEEeCCCcEEEEeCCC
Q 004255 442 YSQWI-AIVSSKGTCHVFVLSP 462 (765)
Q Consensus 442 Dg~~L-as~S~dgTVhIwdl~~ 462 (765)
||++| ++-+..+.|+.++.+.
T Consensus 320 ~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 320 TGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp TSSEEEEEETTTTEEEEEEEET
T ss_pred CCCEEEEEeCCCCEEEEEecCC
Confidence 99954 4445677788877654
No 317
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=34.80 E-value=3.6e+02 Score=26.89 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=28.9
Q ss_pred CEEEEEECCCCeEEEEEeCC---CCEEEEEecCCeEEEEe------CCeEEEEECCCCc
Q 004255 173 TAVRFYSFQSHCYEHVLRFR---SSVCMVRCSPRIVAVGL------ATQIYCFDALTLE 222 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~---s~V~sV~~s~~~LaV~~------~~~I~iwD~~t~~ 222 (765)
+.+.+||+.+++-...-..+ ..-..+.++.+++++|. .+.+.+||..+.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 46889999887643322222 12234445666666643 1348888887653
No 318
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=34.61 E-value=2e+02 Score=30.03 Aligned_cols=70 Identities=20% Similarity=0.309 Sum_probs=41.2
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---cccccccEEEEEEccC---CC
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGITSATIQDICFSHY---SQ 444 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~---rG~~~a~I~slaFSpD---g~ 444 (765)
.-..|+|+|||+++++ ...| .|++++ . |. ...+..+. .| ......|+|+|| +.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g-~I~~i~--~-------g~--------~~~~~~~~v~~~g--~~~p~gia~~pdf~~~g 90 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPG-RIRLFR--E-------GR--------LSTYAELSVYHRG--ESGLLGLALHPRFPQEP 90 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTT-EEEEEE--T-------TE--------EEEEEECCCCCST--TCSEEEEEECTTTTTSC
T ss_pred CceEEEEcCCCeEEEE-eCCC-eEEEEE--C-------CC--------ccEeecceEeecC--CCCceeEEECCCCCCCC
Confidence 3468999999997776 4435 577777 2 21 01222221 11 124789999999 55
Q ss_pred EEEEEeC-C-----CcEEEEeCC
Q 004255 445 WIAIVSS-K-----GTCHVFVLS 461 (765)
Q Consensus 445 ~Las~S~-d-----gTVhIwdl~ 461 (765)
+|.++.. . +.|..|++.
T Consensus 91 ~lYv~~~~~~~~~~~~v~r~~~~ 113 (352)
T 2ism_A 91 YVYAYRTVAEGGLRNQVVRLRHL 113 (352)
T ss_dssp EEEEEEEECTTSSEEEEEEEEEC
T ss_pred EEEEEEecCCCCCccEEEEEEeC
Confidence 5554443 2 556666665
No 319
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=34.59 E-value=43 Score=39.10 Aligned_cols=96 Identities=17% Similarity=0.104 Sum_probs=53.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc-CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (765)
Q Consensus 347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~-dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l 425 (765)
..+.|.++|+........+.........|+++|++.+|.-+.. ....|.++++. |. ....+
T Consensus 473 ~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d--------G~----------~~~~l 534 (699)
T 1n7d_A 473 VLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV----------DIYSL 534 (699)
T ss_dssp TTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS--------SC----------CCCEE
T ss_pred cCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC--------CC----------CeeEE
Confidence 3567888998765544444333334578999996554444433 21346666552 21 11111
Q ss_pred ecccccccEEEEEEccCCCEEE-EEeCCCcEEEEeCC
Q 004255 426 HRGITSATIQDICFSHYSQWIA-IVSSKGTCHVFVLS 461 (765)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~La-s~S~dgTVhIwdl~ 461 (765)
... .-..-..|+|+|++++|. +-+..++|.+++++
T Consensus 535 ~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 535 VTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp SCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred EeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence 111 011245699999866554 44556788888875
No 320
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=33.15 E-value=3.9e+02 Score=29.35 Aligned_cols=101 Identities=12% Similarity=0.155 Sum_probs=51.7
Q ss_pred CCCCeEEEEECCCC---cEEEEec---c------CCCCeEEEEECCC----CCEEEEEEcCC---------CEEEE--Ee
Q 004255 346 DNAGIVVVKDFVTR---AIISQFK---A------HTSPISALCFDPS----GTLLVTASVYG---------NNINI--FR 398 (765)
Q Consensus 346 ~~dG~V~IwDl~s~---~~i~~~~---a------H~~~IsaLaFSpd----G~lLATaS~dG---------t~IrV--Wd 398 (765)
...|.|++++.... +.+..+. + ....+..|+|+|+ |.+.++-+.+. ...+| |.
T Consensus 33 er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~ 112 (463)
T 2wg3_C 33 EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYT 112 (463)
T ss_dssp ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEE
T ss_pred eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEE
Confidence 35678888875322 1223222 1 1456788999996 66666654321 12344 44
Q ss_pred CCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 004255 399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453 (765)
Q Consensus 399 i~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dg 453 (765)
+... .....++ ...+.+.++........-..|+|.|||++.++.++.+
T Consensus 113 ~~~~------~~~~~d~-~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 113 VSRK------NPHQVDL-RTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp BCTT------CTTSBCG-GGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred EcCC------CCCccCC-CCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 4220 0000011 1124455543211222467899999998766666544
No 321
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=30.24 E-value=1e+02 Score=31.82 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=35.0
Q ss_pred eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 004255 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS 451 (765)
Q Consensus 372 IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~ 451 (765)
+..|.+.+++++++.+. +|...+-.|- |. + .. .+..+. ...+.+++|.+++++++++.
T Consensus 124 ~~~i~~~~~~~~~~~~~-~g~v~~S~Dg---------G~-------t-W~--~~~~~~-~~~~~~~~~~~~~~~~~~g~- 181 (327)
T 2xbg_A 124 PRLIKALGNGSAEMITN-VGAIYRTKDS---------GK-------N-WQ--ALVQEA-IGVMRNLNRSPSGEYVAVSS- 181 (327)
T ss_dssp EEEEEEEETTEEEEEET-TCCEEEESST---------TS-------S-EE--EEECSC-CCCEEEEEECTTSCEEEEET-
T ss_pred eEEEEEECCCCEEEEeC-CccEEEEcCC---------CC-------C-CE--EeecCC-CcceEEEEEcCCCcEEEEEC-
Confidence 45677777777777654 4653343331 21 0 11 122222 23588999999999887765
Q ss_pred CCc
Q 004255 452 KGT 454 (765)
Q Consensus 452 dgT 454 (765)
+|.
T Consensus 182 ~G~ 184 (327)
T 2xbg_A 182 RGS 184 (327)
T ss_dssp TSS
T ss_pred CCc
Confidence 443
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=30.00 E-value=4.1e+02 Score=26.16 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=28.8
Q ss_pred CEEEEEECCCCeEEEEEeCCCC---EEEEEecCCeEEEEeC------CeEEEEECCCCc
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSS---VCMVRCSPRIVAVGLA------TQIYCFDALTLE 222 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~---V~sV~~s~~~LaV~~~------~~I~iwD~~t~~ 222 (765)
+.+..||+.+++-...-..+.+ -..+.++.+++++|.. +.+++||..+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 88 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQ 88 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCc
Confidence 4688999998864332222221 1234455566666431 248888887764
No 323
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=29.93 E-value=4.3e+02 Score=26.33 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=28.7
Q ss_pred CEEEEEECCCCeEEEEEeCCCC---EEEEEecCCeEEEEeC---------CeEEEEECCCCc
Q 004255 173 TAVRFYSFQSHCYEHVLRFRSS---VCMVRCSPRIVAVGLA---------TQIYCFDALTLE 222 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s~---V~sV~~s~~~LaV~~~---------~~I~iwD~~t~~ 222 (765)
..+..||..+++-...-..+.+ -..+.++.+++++|.. +.+++||..+.+
T Consensus 67 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~ 128 (315)
T 4asc_A 67 AYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFK 128 (315)
T ss_dssp EEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTE
T ss_pred cceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCc
Confidence 3588999998875332222222 1234455566665541 238888887763
No 324
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=28.88 E-value=1.9e+02 Score=30.36 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=18.9
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFR 398 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWd 398 (765)
.-..|+|+|||+++++- .+| .|+++|
T Consensus 30 ~P~~ia~~pdG~l~V~e-~~g-~I~~~d 55 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTE-RPG-RLVLIS 55 (354)
T ss_dssp CEEEEEEEETTEEEEEE-TTT-EEEEEC
T ss_pred CCeEEEEcCCCeEEEEe-CCC-EEEEEe
Confidence 45789999999977764 435 477776
No 325
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=28.81 E-value=5e+02 Score=26.76 Aligned_cols=70 Identities=11% Similarity=-0.039 Sum_probs=41.7
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 004255 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (765)
Q Consensus 370 ~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~ 449 (765)
..-+.|+|+|++..|.-+......|..+|+. |. .+.. .+..+ ...-..|++. ++....+-
T Consensus 203 ~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d--------G~--------~~~~-~~~~~--~~~P~giav~-~~~ly~td 262 (349)
T 3v64_C 203 FWPNGLTIDYAGRRMYWVDAKHHVIERANLD--------GS--------HRKA-VISQG--LPHPFAITVF-EDSLYWTD 262 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT--------SC--------SCEE-EECSS--CSSEEEEEEE-TTEEEEEE
T ss_pred CCcceEEEeCCCCEEEEEECCCCEEEEEeCC--------CC--------ceEE-EEeCC--CCCceEEEEE-CCEEEEec
Confidence 3457899999888887777767778888873 21 0111 11111 1235678883 44444455
Q ss_pred eCCCcEEEEe
Q 004255 450 SSKGTCHVFV 459 (765)
Q Consensus 450 S~dgTVhIwd 459 (765)
...+.|..++
T Consensus 263 ~~~~~V~~~~ 272 (349)
T 3v64_C 263 WHTKSINSAN 272 (349)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCeEEEEE
Confidence 5566666665
No 326
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=27.59 E-value=3.1e+02 Score=29.03 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=21.4
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255 370 SPISALCFDPSGTLLVTASVYGNNINIFRI 399 (765)
Q Consensus 370 ~~IsaLaFSpdG~lLATaS~dGt~IrVWdi 399 (765)
..-..|+|.|||++|+|--..|+ |++++.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~-I~~v~~ 60 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEAT-ITRVDA 60 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCE-EEEECT
T ss_pred CCceEEEEcCCCcEEEEEecCCE-EEEEEC
Confidence 44578999999998887653454 777764
No 327
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.98 E-value=2.1e+02 Score=34.67 Aligned_cols=33 Identities=21% Similarity=0.115 Sum_probs=29.2
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (765)
Q Consensus 433 ~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg 465 (765)
.|.+++..+|..+|.+-+.|+++|||++.+...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence 578889999999999999999999999987544
No 328
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=25.88 E-value=4.8e+02 Score=25.62 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=29.7
Q ss_pred CEEEEEECCCCeEEEEEeCCC---CEEEEEecCCeEEEEe-C-----CeEEEEECCCCc
Q 004255 173 TAVRFYSFQSHCYEHVLRFRS---SVCMVRCSPRIVAVGL-A-----TQIYCFDALTLE 222 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s---~V~sV~~s~~~LaV~~-~-----~~I~iwD~~t~~ 222 (765)
+.+.+||..+++-...-..+. .-..+.++.+++++|. . +.+++||+.+.+
T Consensus 77 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 77 RTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred cceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence 468899999886443322222 2234445666666654 2 248888887664
No 329
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.37 E-value=3.1e+02 Score=33.17 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=25.4
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPS 402 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~ 402 (765)
.|.+++..++..+|.|-+. ++.+|||++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~-D~~LRiWsl~t~ 267 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSL-DYKLKVLDLSTN 267 (950)
T ss_dssp CEEEEEEETTTTEEEEEET-TCEEEEEETTTT
T ss_pred eEEEEeecCCCcEEEEEEC-CCEEEEEECCCC
Confidence 4667778888899999999 567999998763
No 330
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=25.02 E-value=8e+02 Score=27.85 Aligned_cols=181 Identities=13% Similarity=0.027 Sum_probs=0.0
Q ss_pred CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC--CEEEEEecC--CeE
Q 004255 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP--RIV 205 (765)
Q Consensus 130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s--~V~sV~~s~--~~L 205 (765)
.|+|++... ..|+..|+.+.+....+...+ .+.+|++++ +.|
T Consensus 6 ~~~Ll~s~~----------------------------------~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~l 51 (628)
T 4a0p_A 6 EAFLLFSRR----------------------------------ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRI 51 (628)
T ss_dssp CCEEEEEET----------------------------------TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEE
T ss_pred CcEEEEEeC----------------------------------CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEE
Q ss_pred EEEe--CCeEEEEECCCCceeEEEEec-CCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCC
Q 004255 206 AVGL--ATQIYCFDALTLENKFSVLTY-PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPS 280 (765)
Q Consensus 206 aV~~--~~~I~iwD~~t~~~l~tl~t~-p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~ 280 (765)
.++. .++|+.+++........+... ..| .-+|+.. +.|-.+.
T Consensus 52 ywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P--------------~GlAvD~~~~~LY~tD------------------- 98 (628)
T 4a0p_A 52 YWTDISLKTISRAFMNGSALEHVVEFGLDYP--------------EGMAVDWLGKNLYWAD------------------- 98 (628)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECSSCSCC--------------CEEEEETTTTEEEEEE-------------------
T ss_pred EEEECCCCeEEEEECCCCCcEEEEeCCCCCc--------------ceEEEEeCCCEEEEEE-------------------
Q ss_pred CCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 004255 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (765)
Q Consensus 281 ~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~ 360 (765)
...+.|.+.|+....
T Consensus 99 -----------------------------------------------------------------~~~~~I~v~~~dG~~ 113 (628)
T 4a0p_A 99 -----------------------------------------------------------------TGTNRIEVSKLDGQH 113 (628)
T ss_dssp -----------------------------------------------------------------TTTTEEEEEETTSTT
T ss_pred -----------------------------------------------------------------CCCCEEEEEecCCCc
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 004255 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (765)
Q Consensus 361 ~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS 440 (765)
....+...-..-..|+++|...+|.-+.. |..-+|+.+... | .....+-.+... -..|+++
T Consensus 114 ~~~l~~~~l~~P~~iavdp~~G~lY~tD~-g~~~~I~r~~~d------G----------~~~~~l~~~~~~--P~GlalD 174 (628)
T 4a0p_A 114 RQVLVWKDLDSPRALALDPAEGFMYWTEW-GGKPKIDRAAMD------G----------SERTTLVPNVGR--ANGLTID 174 (628)
T ss_dssp CEEEECSSCCCEEEEEEETTTTEEEEEEC-SSSCEEEEEETT------S----------CSCEEEECSCSS--EEEEEEE
T ss_pred EEEEEeCCCCCcccEEEccCCCeEEEeCC-CCCCEEEEEeCC------C----------CceEEEECCCCC--cceEEEc
Q ss_pred cC-CCEEEEEeCCCcEEEEeCC
Q 004255 441 HY-SQWIAIVSSKGTCHVFVLS 461 (765)
Q Consensus 441 pD-g~~Las~S~dgTVhIwdl~ 461 (765)
++ ++...+-+..+.|..++++
T Consensus 175 ~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 175 YAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETT
T ss_pred cccCEEEEEECCCCEEEEEcCC
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=25.02 E-value=1e+02 Score=31.15 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=39.5
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 004255 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (765)
Q Consensus 371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S 450 (765)
.+..|+|+|+|.+-|. +. |. ||.+.+.. + ....|..+..++-. .|-+. -..+.|.|+|.+.++
T Consensus 42 ~~~~laf~P~G~LYaV-~~-G~---Ly~~~~~t-----~-~~~~W~~s~t~IG~--~Gw~~--F~a~~fD~~G~LYav-- 104 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LN-DK---IYKGTPPT-----H-DNDNWMGRAKKIGN--GGWNQ--FQFLFFDPNGYLYAV-- 104 (236)
T ss_dssp TCSEEEECTTSCEEEE-ET-TE---EEEESCCC-----S-TTCCHHHHCEEEEC--SCGGG--CSEEEECTTSCEEEE--
T ss_pred cceeEEECCCccEEEE-eC-Ce---EEEECCCC-----C-CcccccccccEecc--ccccc--ceEEEECCCCCEEEe--
Confidence 4568999999998887 44 63 56654410 0 11122222122211 11111 357899999998887
Q ss_pred CCCcEEEE
Q 004255 451 SKGTCHVF 458 (765)
Q Consensus 451 ~dgTVhIw 458 (765)
.||.|.-+
T Consensus 105 ~dG~iyr~ 112 (236)
T 1tl2_A 105 SKDKLYKA 112 (236)
T ss_dssp ETTEEEEE
T ss_pred CCCEEEEe
Confidence 45855443
No 332
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=22.10 E-value=3.9e+02 Score=29.06 Aligned_cols=21 Identities=5% Similarity=0.093 Sum_probs=15.8
Q ss_pred cEEEEEEccCCCEEEEEeCCC
Q 004255 433 TIQDICFSHYSQWIAIVSSKG 453 (765)
Q Consensus 433 ~I~slaFSpDg~~Las~S~dg 453 (765)
.-..|+|.|||++.++.++.+
T Consensus 145 ~~~~l~f~pDG~Lyv~~Gd~~ 165 (454)
T 1cru_A 145 QSGRLVIGPDQKIYYTIGDQG 165 (454)
T ss_dssp CEEEEEECTTSCEEEEECCTT
T ss_pred CCCeEeECCCCeEEEEECCCC
Confidence 368899999998766665543
No 333
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=21.62 E-value=5.8e+02 Score=25.04 Aligned_cols=50 Identities=8% Similarity=0.208 Sum_probs=30.4
Q ss_pred CEEEEEECCCCeEEEEEeCCC---CEEEEEecCCeEEEEeC-----CeEEEEECCCCc
Q 004255 173 TAVRFYSFQSHCYEHVLRFRS---SVCMVRCSPRIVAVGLA-----TQIYCFDALTLE 222 (765)
Q Consensus 173 ~tV~lWdlktg~~v~tL~~~s---~V~sV~~s~~~LaV~~~-----~~I~iwD~~t~~ 222 (765)
+.+..||..+++-...-..+. .-..+.++.+++++|.. +.+++||+.+.+
T Consensus 24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~ 81 (306)
T 3ii7_A 24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDS 81 (306)
T ss_dssp TSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTE
T ss_pred ceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCe
Confidence 468899999887543222222 22344456666666542 458899988764
No 334
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=20.02 E-value=7.7e+02 Score=25.86 Aligned_cols=97 Identities=11% Similarity=0.155 Sum_probs=47.7
Q ss_pred CCeEEEEECCCCcE--EEEec----cCCCCeEEEEECCC----CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 004255 348 AGIVVVKDFVTRAI--ISQFK----AHTSPISALCFDPS----GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (765)
Q Consensus 348 dG~V~IwDl~s~~~--i~~~~----aH~~~IsaLaFSpd----G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~ 417 (765)
.|.|++++..+++. +..+. ........|+|+|+ |.+.++-+.... -+|+.+.... ....+. ...
T Consensus 52 ~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~-~~v~R~~~~~-~~~~~~---~~~- 125 (347)
T 3das_A 52 EATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD-NRIVRMLYDE-KKPSGE---QLG- 125 (347)
T ss_dssp TCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS-EEEEEEEBCT-TSCTTC---CBC-
T ss_pred CCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC-CEEEEEEeCC-CCcccc---cCC-
Confidence 78888888765543 22221 23456789999995 666665432111 2444432210 000000 000
Q ss_pred cceEEEE-EecccccccEEEEEEccCCCEEEEEeC
Q 004255 418 SHVHLYK-LHRGITSATIQDICFSHYSQWIAIVSS 451 (765)
Q Consensus 418 s~~~l~~-l~rG~~~a~I~slaFSpDg~~Las~S~ 451 (765)
..+.+++ +..+ ....-..|+|.|||.+.++.++
T Consensus 126 ~~~~i~~~~p~~-~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 126 APDTVFRGIPKG-VIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp CCEEEEEEECCC-SSCCCCCEEECTTSCEEEECBC
T ss_pred CcEEEEEcCCCC-CCccCccccCCCCCCEEEEECC
Confidence 1133332 3221 1112457999999986666543
Done!