Query 004256
Match_columns 765
No_of_seqs 725 out of 4941
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 20:16:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02442 Cob-chelat-sub cobal 100.0 1.5E-88 3.3E-93 792.0 60.5 619 92-744 1-633 (633)
2 PRK13406 bchD magnesium chelat 100.0 1.1E-87 2.3E-92 767.6 54.7 570 100-759 8-583 (584)
3 TIGR02031 BchD-ChlD magnesium 100.0 2E-86 4.3E-91 765.5 59.9 585 101-751 1-588 (589)
4 COG1239 ChlI Mg-chelatase subu 100.0 1.2E-61 2.7E-66 515.2 27.8 321 90-412 12-332 (423)
5 CHL00081 chlI Mg-protoporyphyr 100.0 1.2E-53 2.5E-58 458.3 25.2 319 89-409 11-329 (350)
6 TIGR02030 BchI-ChlI magnesium 100.0 7E-50 1.5E-54 430.0 26.6 316 92-409 1-316 (337)
7 PRK13407 bchI magnesium chelat 100.0 9.6E-46 2.1E-50 397.0 26.9 311 90-409 3-313 (334)
8 COG2204 AtoC Response regulato 100.0 2.8E-46 6E-51 409.7 20.8 280 19-360 82-374 (464)
9 COG1240 ChlD Mg-chelatase subu 100.0 1.4E-39 3E-44 325.0 25.4 240 486-757 18-258 (261)
10 COG3829 RocR Transcriptional r 100.0 2.1E-40 4.6E-45 361.3 17.9 226 89-359 239-478 (560)
11 COG3604 FhlA Transcriptional r 100.0 5.2E-40 1.1E-44 353.1 18.7 225 91-360 219-456 (550)
12 TIGR02915 PEP_resp_reg putativ 100.0 4.2E-31 9.1E-36 300.0 23.7 276 22-358 82-370 (445)
13 PRK15424 propionate catabolism 100.0 2.5E-31 5.5E-36 301.8 21.5 274 24-359 165-464 (538)
14 TIGR02974 phageshock_pspF psp 100.0 1.8E-31 4E-36 288.8 18.0 219 97-360 1-233 (329)
15 COG3283 TyrR Transcriptional r 100.0 8.8E-31 1.9E-35 269.6 14.9 221 90-360 199-432 (511)
16 COG1221 PspF Transcriptional r 100.0 7.3E-31 1.6E-35 283.6 14.2 228 92-363 75-312 (403)
17 PRK10923 glnG nitrogen regulat 100.0 1.4E-29 3E-34 289.4 24.1 274 22-359 84-370 (469)
18 PRK11608 pspF phage shock prot 100.0 6E-30 1.3E-34 277.3 19.1 222 94-360 5-240 (326)
19 TIGR02329 propionate_PrpR prop 100.0 1.3E-29 2.8E-34 288.3 21.6 221 91-359 208-449 (526)
20 PRK05022 anaerobic nitric oxid 100.0 1.7E-29 3.6E-34 289.9 21.9 224 93-361 185-421 (509)
21 PRK11361 acetoacetate metaboli 100.0 4.8E-29 1E-33 284.2 21.8 277 21-357 84-373 (457)
22 PF01078 Mg_chelatase: Magnesi 100.0 4.6E-30 1E-34 254.1 11.2 176 93-296 1-200 (206)
23 TIGR01817 nifA Nif-specific re 100.0 1E-28 2.2E-33 285.9 21.8 224 89-358 190-426 (534)
24 PRK09862 putative ATP-dependen 100.0 8.9E-29 1.9E-33 277.8 19.8 277 92-405 188-495 (506)
25 TIGR01818 ntrC nitrogen regula 100.0 1.2E-27 2.6E-32 273.2 24.0 276 21-359 78-366 (463)
26 COG0606 Predicted ATPase with 100.0 3.1E-28 6.7E-33 263.2 17.4 277 91-402 175-485 (490)
27 PRK13531 regulatory ATPase Rav 100.0 9.8E-28 2.1E-32 264.3 21.4 257 96-408 21-289 (498)
28 PRK10820 DNA-binding transcrip 100.0 3.2E-28 6.9E-33 279.4 18.2 224 90-358 199-435 (520)
29 PRK15115 response regulator Gl 100.0 8.4E-28 1.8E-32 272.9 21.3 269 21-359 85-366 (444)
30 TIGR00368 Mg chelatase-related 100.0 3.4E-27 7.3E-32 266.6 23.1 276 91-401 188-498 (499)
31 smart00350 MCM minichromosome 100.0 6.6E-27 1.4E-31 267.8 25.9 263 95-403 203-505 (509)
32 PRK15429 formate hydrogenlyase 100.0 1.7E-27 3.6E-32 283.2 20.3 224 92-360 373-609 (686)
33 COG3284 AcoR Transcriptional a 99.9 2.8E-27 6E-32 263.3 16.7 216 98-365 316-545 (606)
34 PRK10365 transcriptional regul 99.9 1.5E-26 3.4E-31 262.4 23.0 270 23-357 87-369 (441)
35 PRK11388 DNA-binding transcrip 99.9 5.7E-27 1.2E-31 277.1 19.6 218 91-357 321-551 (638)
36 cd01451 vWA_Magnesium_chelatas 99.9 2E-24 4.4E-29 214.5 23.0 174 563-756 2-177 (178)
37 PF00158 Sigma54_activat: Sigm 99.9 1.9E-25 4.1E-30 218.6 11.2 152 97-292 1-165 (168)
38 PTZ00111 DNA replication licen 99.9 1.6E-22 3.5E-27 236.2 25.1 264 95-402 450-804 (915)
39 TIGR02902 spore_lonB ATP-depen 99.9 5.2E-22 1.1E-26 228.0 22.2 245 88-400 58-330 (531)
40 COG0714 MoxR-like ATPases [Gen 99.9 7.8E-22 1.7E-26 214.9 19.7 265 95-408 24-302 (329)
41 PF00493 MCM: MCM2/3/5 family 99.9 1.4E-22 3E-27 219.9 7.8 263 95-402 24-326 (331)
42 cd01463 vWA_VGCC_like VWA Volt 99.9 2.4E-20 5.1E-25 187.3 19.0 164 559-747 11-190 (190)
43 PRK13685 hypothetical protein; 99.8 6.6E-20 1.4E-24 199.1 23.1 183 559-762 86-290 (326)
44 cd01465 vWA_subgroup VWA subgr 99.8 1.4E-19 3E-24 178.0 20.1 162 562-747 1-164 (170)
45 TIGR02640 gas_vesic_GvpN gas v 99.8 5.5E-20 1.2E-24 193.8 17.8 214 115-407 20-262 (262)
46 cd01466 vWA_C3HC4_type VWA C3H 99.8 7.2E-20 1.6E-24 177.6 17.2 149 563-743 2-154 (155)
47 cd01453 vWA_transcription_fact 99.8 5E-19 1.1E-23 176.2 20.2 165 562-757 4-177 (183)
48 TIGR00764 lon_rel lon-related 99.8 3.8E-19 8.3E-24 206.6 22.0 281 92-402 15-391 (608)
49 COG1241 MCM2 Predicted ATPase 99.8 5.1E-19 1.1E-23 202.9 21.6 266 95-405 286-595 (682)
50 KOG0482 DNA replication licens 99.8 2.7E-19 5.8E-24 191.9 16.4 328 20-406 276-642 (721)
51 KOG0480 DNA replication licens 99.8 1.2E-18 2.7E-23 191.9 20.2 263 94-402 344-643 (764)
52 cd01461 vWA_interalpha_trypsin 99.8 2.1E-18 4.5E-23 169.6 19.3 158 561-748 2-164 (171)
53 cd01456 vWA_ywmD_type VWA ywmD 99.8 1.5E-18 3.3E-23 176.4 18.3 159 557-746 16-203 (206)
54 TIGR03436 acidobact_VWFA VWFA- 99.8 4.7E-18 1E-22 182.7 22.1 179 559-765 51-257 (296)
55 PRK13765 ATP-dependent proteas 99.8 1.1E-18 2.3E-23 202.0 18.1 285 90-400 26-398 (637)
56 cd01470 vWA_complement_factors 99.8 5E-18 1.1E-22 171.6 20.4 173 562-754 1-196 (198)
57 PF05496 RuvB_N: Holliday junc 99.8 1.8E-19 3.9E-24 179.8 9.1 203 90-384 19-231 (233)
58 cd01467 vWA_BatA_type VWA BatA 99.8 1.3E-17 2.9E-22 165.6 19.8 158 561-747 2-178 (180)
59 cd01472 vWA_collagen von Wille 99.8 1.1E-17 2.4E-22 163.8 18.4 154 562-743 1-160 (164)
60 cd01480 vWA_collagen_alpha_1-V 99.8 1.2E-17 2.5E-22 167.2 18.4 157 561-743 2-170 (186)
61 TIGR00868 hCaCC calcium-activa 99.8 1.9E-17 4.1E-22 194.7 21.3 168 561-760 304-478 (863)
62 COG2255 RuvB Holliday junction 99.8 1.8E-17 4E-22 168.0 17.9 224 90-405 21-254 (332)
63 cd01474 vWA_ATR ATR (Anthrax T 99.8 8.1E-17 1.8E-21 161.0 20.6 175 560-761 3-180 (185)
64 PF13519 VWA_2: von Willebrand 99.7 1.3E-17 2.9E-22 163.2 13.7 163 563-758 1-172 (172)
65 TIGR02903 spore_lon_C ATP-depe 99.7 4.6E-17 9.9E-22 190.0 19.4 243 90-400 149-428 (615)
66 COG1223 Predicted ATPase (AAA+ 99.7 7.9E-18 1.7E-22 167.8 8.6 265 32-402 66-355 (368)
67 KOG0478 DNA replication licens 99.7 1.5E-16 3.3E-21 176.8 19.7 258 96-401 430-723 (804)
68 cd01464 vWA_subfamily VWA subf 99.7 2.7E-16 5.8E-21 155.9 16.9 147 561-734 3-159 (176)
69 cd01482 vWA_collagen_alphaI-XI 99.7 4.3E-16 9.2E-21 152.6 18.1 155 562-744 1-162 (164)
70 PF07726 AAA_3: ATPase family 99.7 3.8E-17 8.1E-22 149.3 8.9 124 118-290 1-130 (131)
71 TIGR03788 marine_srt_targ mari 99.7 8.8E-16 1.9E-20 180.1 22.9 173 558-762 268-445 (596)
72 TIGR01650 PD_CobS cobaltochela 99.7 3.4E-16 7.3E-21 166.4 17.5 220 102-407 52-299 (327)
73 cd01477 vWA_F09G8-8_type VWA F 99.7 1E-15 2.2E-20 153.4 19.1 160 559-742 17-191 (193)
74 PF13768 VWA_3: von Willebrand 99.7 5.1E-16 1.1E-20 150.5 16.3 148 562-741 1-154 (155)
75 COG4650 RtcR Sigma54-dependent 99.7 3.7E-17 8E-22 165.3 6.6 156 115-312 207-373 (531)
76 PRK00080 ruvB Holliday junctio 99.7 1.3E-15 2.9E-20 166.0 19.1 222 89-402 19-250 (328)
77 cd01471 vWA_micronemal_protein 99.7 1.2E-15 2.7E-20 152.5 16.9 150 562-736 1-161 (186)
78 COG1222 RPT1 ATP-dependent 26S 99.7 4.3E-16 9.4E-21 162.8 12.1 221 90-406 146-396 (406)
79 cd01475 vWA_Matrilin VWA_Matri 99.7 4.5E-15 9.8E-20 153.0 19.5 168 561-758 2-179 (224)
80 TIGR02880 cbbX_cfxQ probable R 99.7 2.6E-16 5.7E-21 167.4 10.2 194 96-358 23-251 (284)
81 cd01454 vWA_norD_type norD typ 99.7 6.4E-15 1.4E-19 145.7 19.4 144 563-723 2-154 (174)
82 cd01462 VWA_YIEM_type VWA YIEM 99.7 5.2E-15 1.1E-19 143.0 18.3 146 563-735 2-147 (152)
83 PF07728 AAA_5: AAA domain (dy 99.7 1.5E-16 3.2E-21 151.3 7.0 128 118-289 1-139 (139)
84 TIGR00635 ruvB Holliday juncti 99.6 3.6E-15 7.9E-20 161.0 18.4 216 93-401 2-228 (305)
85 cd01450 vWFA_subfamily_ECM Von 99.6 4.2E-15 9.2E-20 144.0 17.1 153 563-741 2-160 (161)
86 PF14532 Sigma54_activ_2: Sigm 99.6 1.4E-16 3.1E-21 151.4 6.2 130 98-300 1-138 (138)
87 PRK05342 clpX ATP-dependent pr 99.6 8.6E-16 1.9E-20 170.4 13.3 137 96-276 72-239 (412)
88 KOG0477 DNA replication licens 99.6 2E-15 4.3E-20 165.9 14.9 265 96-404 450-759 (854)
89 COG2256 MGS1 ATPase related to 99.6 1.7E-15 3.6E-20 160.9 13.5 213 90-400 19-236 (436)
90 cd01452 VWA_26S_proteasome_sub 99.6 3E-14 6.5E-19 140.8 20.4 160 563-746 5-175 (187)
91 PTZ00441 sporozoite surface pr 99.6 1.7E-14 3.7E-19 161.5 20.8 175 560-762 41-230 (576)
92 TIGR02881 spore_V_K stage V sp 99.6 3.3E-15 7E-20 157.6 14.3 213 95-395 6-253 (261)
93 PHA02244 ATPase-like protein 99.6 2.7E-15 5.8E-20 160.9 13.4 151 97-299 98-262 (383)
94 cd01476 VWA_integrin_invertebr 99.6 1.4E-14 3E-19 141.6 16.9 149 562-736 1-157 (163)
95 cd01473 vWA_CTRP CTRP for CS 99.6 2.1E-14 4.4E-19 144.2 18.0 149 563-735 2-161 (192)
96 cd01469 vWA_integrins_alpha_su 99.6 2.2E-14 4.9E-19 142.3 18.1 161 562-746 1-171 (177)
97 cd01455 vWA_F11C1-5a_type Von 99.6 3.1E-14 6.8E-19 139.7 17.4 163 563-761 2-188 (191)
98 TIGR00382 clpX endopeptidase C 99.6 9.1E-15 2E-19 161.3 15.2 223 95-381 77-383 (413)
99 KOG0730 AAA+-type ATPase [Post 99.6 7E-15 1.5E-19 164.3 11.8 215 89-402 428-674 (693)
100 CHL00181 cbbX CbbX; Provisiona 99.6 7.4E-15 1.6E-19 156.3 11.1 156 96-310 24-207 (287)
101 KOG0479 DNA replication licens 99.6 1.4E-13 2.9E-18 150.6 20.5 262 96-402 302-642 (818)
102 smart00327 VWA von Willebrand 99.6 2.1E-13 4.5E-18 134.1 20.3 157 561-742 1-164 (177)
103 KOG0734 AAA+-type ATPase conta 99.6 1.4E-14 3E-19 157.2 11.2 216 91-404 300-543 (752)
104 KOG0481 DNA replication licens 99.6 1E-13 2.2E-18 149.6 17.7 261 96-404 332-641 (729)
105 COG4245 TerY Uncharacterized p 99.6 1.7E-13 3.7E-18 130.5 16.9 172 561-762 3-184 (207)
106 PRK03992 proteasome-activating 99.5 2.9E-14 6.3E-19 158.5 13.6 222 90-406 126-376 (389)
107 COG1224 TIP49 DNA helicase TIP 99.5 6.4E-13 1.4E-17 138.6 17.8 132 225-404 292-434 (450)
108 TIGR03346 chaperone_ClpB ATP-d 99.5 2.2E-13 4.7E-18 165.5 16.8 215 95-378 565-821 (852)
109 smart00763 AAA_PrkA PrkA AAA d 99.5 2.5E-13 5.5E-18 146.0 14.4 213 94-309 49-324 (361)
110 KOG2028 ATPase related to the 99.5 1E-13 2.2E-18 144.4 10.4 223 90-401 133-367 (554)
111 cd00198 vWFA Von Willebrand fa 99.5 1.6E-12 3.4E-17 124.7 18.0 152 563-740 2-160 (161)
112 PRK14956 DNA polymerase III su 99.5 2.6E-13 5.5E-18 151.2 14.1 232 89-400 12-244 (484)
113 PRK07003 DNA polymerase III su 99.5 4.8E-13 1E-17 154.1 16.4 227 88-397 9-239 (830)
114 CHL00195 ycf46 Ycf46; Provisio 99.5 2.2E-13 4.9E-18 154.0 13.6 216 91-405 224-466 (489)
115 PRK13342 recombination factor 99.5 3E-13 6.5E-18 151.9 14.4 208 89-401 6-218 (413)
116 TIGR01241 FtsH_fam ATP-depende 99.5 1.3E-13 2.8E-18 158.5 11.6 216 90-404 50-297 (495)
117 PRK11034 clpA ATP-dependent Cl 99.5 6E-13 1.3E-17 157.8 17.1 210 96-377 459-710 (758)
118 PTZ00361 26 proteosome regulat 99.5 1.1E-13 2.3E-18 154.4 10.2 220 92-407 180-429 (438)
119 PF00092 VWA: von Willebrand f 99.5 4.8E-13 1E-17 132.0 13.5 158 563-746 1-168 (178)
120 COG4867 Uncharacterized protei 99.5 1.3E-12 2.8E-17 137.4 17.2 224 505-755 414-647 (652)
121 cd01457 vWA_ORF176_type VWA OR 99.5 1.6E-12 3.5E-17 131.5 17.3 153 561-735 2-165 (199)
122 TIGR01242 26Sp45 26S proteasom 99.5 1.8E-13 3.9E-18 151.3 11.2 218 90-402 117-363 (364)
123 CHL00176 ftsH cell division pr 99.5 2.1E-13 4.5E-18 159.0 12.1 215 91-404 179-425 (638)
124 cd01481 vWA_collagen_alpha3-VI 99.5 4.1E-12 9E-17 124.4 18.5 153 563-744 2-163 (165)
125 PTZ00454 26S protease regulato 99.5 2.5E-13 5.5E-18 150.4 11.1 220 89-404 139-388 (398)
126 PRK14958 DNA polymerase III su 99.4 1.4E-12 2.9E-17 149.1 16.9 233 88-400 9-242 (509)
127 KOG0731 AAA+-type ATPase conta 99.4 1.1E-12 2.4E-17 151.1 15.1 218 91-405 307-556 (774)
128 PRK14962 DNA polymerase III su 99.4 3E-12 6.4E-17 144.9 18.0 233 89-401 8-241 (472)
129 PRK10865 protein disaggregatio 99.4 2.2E-12 4.8E-17 156.2 17.8 219 94-377 567-823 (857)
130 PRK14960 DNA polymerase III su 99.4 2.7E-12 5.9E-17 146.6 17.2 230 89-398 9-239 (702)
131 TIGR02639 ClpA ATP-dependent C 99.4 9.9E-13 2.1E-17 157.6 13.7 226 92-401 179-428 (731)
132 PRK13341 recombination factor 99.4 1.4E-12 3E-17 153.9 14.0 219 89-401 22-246 (725)
133 PRK14949 DNA polymerase III su 99.4 2.1E-12 4.5E-17 151.6 14.8 215 89-379 10-225 (944)
134 PRK12323 DNA polymerase III su 99.4 3.3E-12 7.1E-17 145.6 14.9 227 88-397 9-244 (700)
135 PRK14961 DNA polymerase III su 99.4 8.1E-12 1.7E-16 138.0 17.7 229 89-400 10-242 (363)
136 KOG0738 AAA+-type ATPase [Post 99.4 1E-12 2.2E-17 138.4 9.2 158 92-310 209-393 (491)
137 PRK14964 DNA polymerase III su 99.4 6.9E-12 1.5E-16 141.4 15.7 231 88-401 6-240 (491)
138 PRK06645 DNA polymerase III su 99.4 8.3E-12 1.8E-16 141.8 16.2 236 89-404 15-258 (507)
139 PRK08691 DNA polymerase III su 99.4 7.3E-12 1.6E-16 144.5 15.5 230 88-400 9-242 (709)
140 PRK11034 clpA ATP-dependent Cl 99.4 3E-12 6.4E-17 151.9 12.7 224 93-401 184-432 (758)
141 PRK07764 DNA polymerase III su 99.4 1E-11 2.2E-16 148.4 17.1 166 88-296 8-177 (824)
142 COG1219 ClpX ATP-dependent pro 99.4 1.1E-12 2.4E-17 135.0 7.7 137 96-276 62-228 (408)
143 PRK07994 DNA polymerase III su 99.4 9.5E-12 2.1E-16 144.2 16.3 228 89-399 10-241 (647)
144 PRK08903 DnaA regulatory inact 99.4 2.2E-11 4.7E-16 125.8 17.4 207 90-400 13-224 (227)
145 TIGR03420 DnaA_homol_Hda DnaA 99.4 6.7E-12 1.4E-16 129.4 13.2 208 91-399 11-225 (226)
146 PLN03025 replication factor C 99.3 9E-12 2E-16 135.4 14.4 214 88-399 6-220 (319)
147 PRK14957 DNA polymerase III su 99.3 1.5E-11 3.2E-16 140.6 16.3 229 89-400 10-242 (546)
148 PRK14952 DNA polymerase III su 99.3 2.4E-11 5.1E-16 140.2 17.8 232 88-399 6-241 (584)
149 TIGR01243 CDC48 AAA family ATP 99.3 4.9E-12 1.1E-16 152.1 11.9 154 91-309 449-632 (733)
150 PRK12402 replication factor C 99.3 4.2E-11 9.1E-16 131.1 17.5 232 89-399 9-246 (337)
151 PRK14969 DNA polymerase III su 99.3 4.6E-11 9.9E-16 137.5 18.5 229 89-400 10-242 (527)
152 PRK14951 DNA polymerase III su 99.3 2.7E-11 5.8E-16 140.2 16.2 230 88-400 9-247 (618)
153 TIGR03345 VI_ClpV1 type VI sec 99.3 1.6E-11 3.4E-16 148.5 14.8 223 91-397 183-426 (852)
154 COG0542 clpA ATP-binding subun 99.3 6.7E-11 1.5E-15 137.7 19.0 212 96-377 492-749 (786)
155 TIGR02639 ClpA ATP-dependent C 99.3 3.6E-11 7.8E-16 144.3 17.2 211 95-377 454-706 (731)
156 PRK09111 DNA polymerase III su 99.3 6.4E-11 1.4E-15 137.4 16.6 231 88-401 17-256 (598)
157 PRK14959 DNA polymerase III su 99.3 3E-11 6.5E-16 138.9 13.6 228 89-399 10-241 (624)
158 PRK05563 DNA polymerase III su 99.3 1E-10 2.2E-15 135.6 17.9 231 89-399 10-241 (559)
159 KOG0733 Nuclear AAA ATPase (VC 99.3 7.9E-12 1.7E-16 138.1 7.5 155 92-311 508-691 (802)
160 KOG0989 Replication factor C, 99.3 8.6E-11 1.9E-15 121.1 14.6 206 88-379 29-235 (346)
161 KOG1942 DNA helicase, TBP-inte 99.2 6.5E-11 1.4E-15 120.5 13.3 134 225-406 297-442 (456)
162 TIGR00390 hslU ATP-dependent p 99.2 2.8E-11 6.1E-16 132.0 11.4 156 223-400 246-428 (441)
163 PRK08451 DNA polymerase III su 99.2 1.7E-10 3.7E-15 131.3 18.3 229 88-399 7-239 (535)
164 TIGR02928 orc1/cdc6 family rep 99.2 8.6E-11 1.9E-15 130.2 15.4 246 92-402 12-274 (365)
165 PTZ00112 origin recognition co 99.2 5E-11 1.1E-15 137.9 13.5 240 95-406 755-1010(1164)
166 PRK05201 hslU ATP-dependent pr 99.2 4.2E-11 9.1E-16 130.7 12.0 155 224-400 249-430 (443)
167 cd01460 vWA_midasin VWA_Midasi 99.2 1.5E-10 3.3E-15 120.6 15.4 134 559-721 58-204 (266)
168 COG0464 SpoVK ATPases of the A 99.2 4.2E-11 9.2E-16 138.0 12.4 216 90-401 237-482 (494)
169 PRK14965 DNA polymerase III su 99.2 1.4E-10 3E-15 135.1 16.6 227 89-398 10-240 (576)
170 TIGR00763 lon ATP-dependent pr 99.2 9.2E-11 2E-15 141.5 15.4 208 96-379 321-551 (775)
171 PF05762 VWA_CoxE: VWA domain 99.2 2.1E-10 4.5E-15 118.0 15.3 160 514-720 25-188 (222)
172 COG0465 HflB ATP-dependent Zn 99.2 4.9E-11 1.1E-15 135.5 11.2 218 90-405 145-393 (596)
173 TIGR03345 VI_ClpV1 type VI sec 99.2 2.4E-10 5.1E-15 138.3 17.8 214 95-377 566-825 (852)
174 TIGR03689 pup_AAA proteasome A 99.2 9.1E-11 2E-15 132.8 13.2 171 90-311 177-377 (512)
175 PRK14955 DNA polymerase III su 99.2 1.6E-10 3.5E-15 129.2 14.6 232 89-399 10-254 (397)
176 PRK14963 DNA polymerase III su 99.2 1.3E-10 2.9E-15 132.6 14.2 229 88-400 7-238 (504)
177 PRK10733 hflB ATP-dependent me 99.2 3.8E-11 8.3E-16 141.6 10.0 215 92-404 149-394 (644)
178 KOG0737 AAA+-type ATPase [Post 99.2 1.7E-11 3.6E-16 129.5 5.8 164 92-313 89-275 (386)
179 PRK05896 DNA polymerase III su 99.2 3.7E-10 8.1E-15 129.3 17.2 228 89-399 10-241 (605)
180 PRK00440 rfc replication facto 99.2 3.2E-10 6.9E-15 123.1 15.9 213 88-399 10-223 (319)
181 CHL00206 ycf2 Ycf2; Provisiona 99.2 6.3E-11 1.4E-15 146.0 11.1 139 225-405 1733-1880(2281)
182 PRK10997 yieM hypothetical pro 99.2 5.3E-10 1.1E-14 125.0 17.6 135 560-721 322-457 (487)
183 COG2812 DnaX DNA polymerase II 99.2 1E-10 2.2E-15 131.5 12.0 229 88-401 9-243 (515)
184 PRK14950 DNA polymerase III su 99.2 2.6E-10 5.7E-15 133.3 15.7 231 89-398 10-241 (585)
185 PRK06647 DNA polymerase III su 99.2 3.3E-10 7.1E-15 130.9 16.1 228 89-399 10-241 (563)
186 PRK14953 DNA polymerase III su 99.2 4.9E-10 1.1E-14 127.5 16.9 232 89-400 10-242 (486)
187 cd01458 vWA_ku Ku70/Ku80 N-ter 99.2 9.3E-10 2E-14 113.0 17.4 141 563-722 3-173 (218)
188 PRK08084 DNA replication initi 99.2 3.4E-10 7.4E-15 117.5 14.1 207 91-400 18-234 (235)
189 COG1474 CDC6 Cdc6-related prot 99.2 1.6E-10 3.5E-15 126.7 12.2 245 95-406 17-269 (366)
190 PRK07133 DNA polymerase III su 99.2 3.2E-10 7E-15 132.2 15.2 226 89-398 12-239 (725)
191 PRK10787 DNA-binding ATP-depen 99.2 4.7E-10 1E-14 134.3 16.8 229 96-399 323-579 (784)
192 CHL00095 clpC Clp protease ATP 99.2 3.2E-10 7E-15 137.7 15.3 214 95-377 509-776 (821)
193 KOG0745 Putative ATP-dependent 99.1 1.9E-10 4.2E-15 122.9 11.5 203 116-385 226-511 (564)
194 KOG0733 Nuclear AAA ATPase (VC 99.1 9.1E-11 2E-15 129.9 9.0 159 92-311 187-373 (802)
195 KOG0652 26S proteasome regulat 99.1 1.6E-10 3.6E-15 115.8 9.9 219 92-405 168-415 (424)
196 KOG0728 26S proteasome regulat 99.1 1.5E-10 3.3E-15 115.4 9.6 194 116-404 181-390 (404)
197 KOG0742 AAA+-type ATPase [Post 99.1 1E-09 2.3E-14 116.3 16.1 241 91-404 351-614 (630)
198 PHA02544 44 clamp loader, smal 99.1 7.2E-10 1.6E-14 120.4 15.6 211 88-397 14-226 (316)
199 CHL00095 clpC Clp protease ATP 99.1 1.9E-10 4E-15 139.8 11.9 160 93-310 177-352 (821)
200 COG0466 Lon ATP-dependent Lon 99.1 2.5E-10 5.5E-15 129.4 11.8 202 97-374 325-549 (782)
201 PF07724 AAA_2: AAA domain (Cd 99.1 3.8E-11 8.3E-16 118.1 4.5 115 117-277 4-130 (171)
202 PRK06893 DNA replication initi 99.1 1E-09 2.2E-14 113.5 15.1 209 90-400 11-228 (229)
203 PRK00411 cdc6 cell division co 99.1 1.2E-09 2.5E-14 122.5 16.8 241 94-402 29-282 (394)
204 KOG0739 AAA+-type ATPase [Post 99.1 8.6E-11 1.9E-15 120.0 6.8 148 88-298 126-299 (439)
205 KOG0727 26S proteasome regulat 99.1 3.5E-10 7.5E-15 113.0 10.7 193 116-404 189-398 (408)
206 TIGR02397 dnaX_nterm DNA polym 99.1 2.4E-09 5.2E-14 118.1 18.2 229 89-400 8-240 (355)
207 PRK14954 DNA polymerase III su 99.1 9.1E-10 2E-14 128.0 15.2 232 89-399 10-254 (620)
208 KOG2004 Mitochondrial ATP-depe 99.1 3.7E-10 8.1E-15 127.2 11.4 205 96-376 412-639 (906)
209 PRK08727 hypothetical protein; 99.1 1.2E-09 2.7E-14 113.1 14.5 128 226-400 95-229 (233)
210 PLN00020 ribulose bisphosphate 99.1 2.8E-10 6E-15 121.6 9.5 138 116-310 148-309 (413)
211 PRK11331 5-methylcytosine-spec 99.1 6.6E-10 1.4E-14 122.8 12.6 161 94-296 174-356 (459)
212 TIGR03346 chaperone_ClpB ATP-d 99.1 4E-10 8.6E-15 137.3 11.7 159 92-309 170-346 (852)
213 PF06068 TIP49: TIP49 C-termin 99.1 1.7E-09 3.6E-14 115.5 14.7 107 225-379 279-396 (398)
214 TIGR01243 CDC48 AAA family ATP 99.1 4.2E-10 9.1E-15 135.5 10.9 155 90-309 173-356 (733)
215 COG2425 Uncharacterized protei 99.1 1.5E-09 3.2E-14 119.1 14.0 157 550-736 261-419 (437)
216 KOG0736 Peroxisome assembly fa 99.1 2.6E-10 5.6E-15 129.4 7.9 157 91-309 668-854 (953)
217 PRK06620 hypothetical protein; 99.0 9.7E-09 2.1E-13 104.9 18.5 123 226-399 87-213 (214)
218 cd00009 AAA The AAA+ (ATPases 99.0 6.7E-10 1.4E-14 104.8 9.2 147 99-295 2-149 (151)
219 PRK04195 replication factor C 99.0 2.6E-09 5.6E-14 122.6 15.8 202 88-399 7-222 (482)
220 PRK10865 protein disaggregatio 99.0 8.6E-10 1.9E-14 133.9 12.3 211 92-365 175-403 (857)
221 PRK14948 DNA polymerase III su 99.0 3.5E-09 7.5E-14 123.8 16.4 167 89-296 10-178 (620)
222 PF10138 vWA-TerF-like: vWA fo 99.0 1.9E-08 4.1E-13 99.5 18.9 164 562-756 2-184 (200)
223 PRK06305 DNA polymerase III su 99.0 5E-09 1.1E-13 118.6 16.6 228 89-399 11-243 (451)
224 KOG0729 26S proteasome regulat 99.0 3.8E-10 8.3E-15 113.5 6.4 225 92-412 174-428 (435)
225 PF05673 DUF815: Protein of un 99.0 5.3E-09 1.2E-13 106.5 14.5 192 90-376 22-243 (249)
226 PRK14971 DNA polymerase III su 99.0 9E-09 2E-13 120.4 18.6 228 89-399 11-243 (614)
227 COG1067 LonB Predicted ATP-dep 99.0 4E-09 8.6E-14 122.2 15.3 260 91-401 100-398 (647)
228 PF00004 AAA: ATPase family as 99.0 2.2E-10 4.7E-15 107.1 3.4 115 119-296 1-131 (132)
229 PRK14970 DNA polymerase III su 99.0 1.1E-08 2.4E-13 113.5 16.9 220 89-400 11-231 (367)
230 KOG0726 26S proteasome regulat 99.0 5.3E-10 1.2E-14 113.9 5.4 219 92-406 182-430 (440)
231 TIGR00362 DnaA chromosomal rep 98.9 2.8E-09 6.1E-14 119.8 10.5 130 226-402 201-337 (405)
232 PRK00149 dnaA chromosomal repl 98.9 5.1E-09 1.1E-13 119.2 11.4 132 226-403 213-350 (450)
233 PRK12422 chromosomal replicati 98.9 7.8E-09 1.7E-13 116.6 12.5 132 225-403 203-344 (445)
234 PRK07940 DNA polymerase III su 98.9 3.9E-09 8.5E-14 117.0 9.4 164 93-303 3-180 (394)
235 PRK09087 hypothetical protein; 98.9 7.1E-08 1.5E-12 99.4 17.7 129 226-401 89-221 (226)
236 PF04056 Ssl1: Ssl1-like; Int 98.9 9.8E-08 2.1E-12 94.6 16.7 161 567-757 1-171 (193)
237 KOG2680 DNA helicase TIP49, TB 98.8 5.4E-08 1.2E-12 99.9 14.9 136 224-407 288-434 (454)
238 TIGR03015 pepcterm_ATPase puta 98.8 1.2E-07 2.7E-12 100.3 18.5 137 225-401 124-265 (269)
239 PRK14086 dnaA chromosomal repl 98.8 1.9E-08 4E-13 115.6 12.0 130 226-402 379-515 (617)
240 KOG2353 L-type voltage-depende 98.8 3E-08 6.5E-13 120.0 14.2 164 557-748 221-400 (1104)
241 PRK05642 DNA replication initi 98.8 5.5E-08 1.2E-12 100.9 13.3 129 226-400 99-233 (234)
242 PRK14088 dnaA chromosomal repl 98.8 2.1E-08 4.6E-13 113.4 10.0 131 225-402 195-332 (440)
243 KOG0744 AAA+-type ATPase [Post 98.8 1.2E-08 2.7E-13 105.7 7.2 217 119-405 180-417 (423)
244 PRK14087 dnaA chromosomal repl 98.8 3.6E-08 7.9E-13 111.6 11.8 132 226-401 208-347 (450)
245 KOG0740 AAA+-type ATPase [Post 98.8 1.6E-08 3.4E-13 111.0 8.1 158 90-309 148-330 (428)
246 PRK15455 PrkA family serine pr 98.7 1.5E-08 3.3E-13 114.1 7.8 202 94-305 75-337 (644)
247 COG0542 clpA ATP-binding subun 98.7 6.4E-08 1.4E-12 113.2 13.0 211 93-386 168-397 (786)
248 PF13654 AAA_32: AAA domain; P 98.7 3.8E-08 8.2E-13 112.3 10.9 183 194-401 299-505 (509)
249 COG5271 MDN1 AAA ATPase contai 98.7 1.9E-07 4E-12 112.1 16.3 213 112-408 884-1113(4600)
250 PF08298 AAA_PrkA: PrkA AAA do 98.7 4.3E-08 9.2E-13 104.9 9.1 204 94-302 59-312 (358)
251 KOG0991 Replication factor C, 98.7 3.4E-08 7.3E-13 98.1 7.5 212 89-398 21-233 (333)
252 KOG0735 AAA+-type ATPase [Post 98.7 3.6E-08 7.7E-13 111.3 8.2 155 90-309 662-845 (952)
253 PRK09112 DNA polymerase III su 98.7 1.3E-07 2.8E-12 103.5 11.9 185 89-307 17-208 (351)
254 KOG2807 RNA polymerase II tran 98.6 8E-07 1.7E-11 91.6 15.9 166 562-757 61-234 (378)
255 KOG0651 26S proteasome regulat 98.6 2.8E-08 6E-13 102.7 5.4 219 90-400 127-371 (388)
256 COG1721 Uncharacterized conser 98.6 1.9E-07 4.1E-12 105.2 12.3 134 505-670 191-333 (416)
257 PRK07471 DNA polymerase III su 98.6 2E-07 4.3E-12 102.6 11.9 51 90-140 14-65 (365)
258 KOG0741 AAA+-type ATPase [Post 98.6 1.1E-08 2.4E-13 111.8 1.8 115 227-384 327-457 (744)
259 PF00308 Bac_DnaA: Bacterial d 98.6 9.2E-08 2E-12 98.2 8.2 113 226-384 99-218 (219)
260 COG2607 Predicted ATPase (AAA+ 98.6 7.6E-07 1.6E-11 89.4 13.3 153 90-308 55-235 (287)
261 KOG0732 AAA+-type ATPase conta 98.5 2.5E-07 5.4E-12 110.4 10.4 199 91-385 261-488 (1080)
262 COG1220 HslU ATP-dependent pro 98.5 8E-07 1.7E-11 93.0 11.1 134 224-377 250-402 (444)
263 KOG1051 Chaperone HSP104 and r 98.5 1.5E-06 3.2E-11 103.3 14.5 134 96-276 563-710 (898)
264 COG0593 DnaA ATPase involved i 98.4 3.2E-06 7E-11 93.0 15.0 131 226-403 177-314 (408)
265 PF11775 CobT_C: Cobalamin bio 98.4 9E-06 2E-10 81.2 16.1 149 558-722 9-188 (219)
266 PRK08058 DNA polymerase III su 98.4 6.6E-07 1.4E-11 97.6 8.8 165 94-303 4-173 (329)
267 PRK07399 DNA polymerase III su 98.4 1.5E-06 3.3E-11 93.9 10.9 171 93-307 2-190 (314)
268 KOG0730 AAA+-type ATPase [Post 98.4 1.1E-06 2.4E-11 99.4 10.0 73 225-310 279-362 (693)
269 cd01468 trunk_domain trunk dom 98.4 1.9E-05 4.1E-10 82.3 18.1 177 561-746 3-224 (239)
270 TIGR00602 rad24 checkpoint pro 98.3 3E-06 6.6E-11 98.9 12.4 54 88-141 77-135 (637)
271 TIGR02688 conserved hypothetic 98.3 6.1E-06 1.3E-10 90.6 13.7 212 115-408 208-439 (449)
272 TIGR01651 CobT cobaltochelatas 98.3 1.4E-05 3.1E-10 90.3 15.9 149 558-722 389-568 (600)
273 TIGR00678 holB DNA polymerase 98.3 5.6E-06 1.2E-10 82.9 11.3 68 224-307 96-163 (188)
274 smart00382 AAA ATPases associa 98.3 1.3E-06 2.9E-11 81.2 6.3 27 116-142 2-28 (148)
275 cd01479 Sec24-like Sec24-like: 98.3 6.7E-05 1.4E-09 78.4 19.3 172 561-744 3-219 (244)
276 PRK04132 replication factor C 98.3 6.6E-06 1.4E-10 98.5 13.0 120 226-399 632-751 (846)
277 KOG2884 26S proteasome regulat 98.3 6.1E-05 1.3E-09 73.9 17.2 160 563-746 5-176 (259)
278 PF09967 DUF2201: VWA-like dom 98.3 3E-06 6.4E-11 79.1 8.0 93 564-672 1-95 (126)
279 PF12775 AAA_7: P-loop contain 98.2 8.9E-06 1.9E-10 86.2 12.3 81 226-309 102-190 (272)
280 COG5271 MDN1 AAA ATPase contai 98.2 3.9E-06 8.4E-11 101.4 10.2 137 116-297 1543-1689(4600)
281 PRK05564 DNA polymerase III su 98.2 8E-06 1.7E-10 88.7 11.9 154 93-303 2-156 (313)
282 PF04811 Sec23_trunk: Sec23/Se 98.2 1.8E-05 4E-10 82.6 14.1 182 561-750 3-230 (243)
283 COG4548 NorD Nitric oxide redu 98.2 8.7E-06 1.9E-10 89.5 11.7 175 549-747 434-622 (637)
284 COG0470 HolB ATPase involved i 98.2 6E-06 1.3E-10 89.7 10.7 162 96-296 2-166 (325)
285 PF13177 DNA_pol3_delta2: DNA 98.2 6.3E-06 1.4E-10 80.5 9.2 155 99-295 1-158 (162)
286 TIGR02877 spore_yhbH sporulati 98.2 0.00016 3.5E-09 77.9 20.4 145 513-671 155-303 (371)
287 KOG0743 AAA+-type ATPase [Post 98.1 3.9E-06 8.5E-11 91.8 7.2 51 91-141 197-260 (457)
288 cd01478 Sec23-like Sec23-like: 98.1 0.00023 5E-09 75.1 20.3 187 561-754 3-264 (267)
289 PRK05707 DNA polymerase III su 98.1 2E-05 4.3E-10 85.8 11.5 145 116-303 22-169 (328)
290 COG3552 CoxE Protein containin 98.1 2.4E-05 5.2E-10 83.0 11.7 159 515-721 188-351 (395)
291 PF05621 TniB: Bacterial TniB 98.0 3.2E-05 7E-10 81.6 11.2 231 96-397 35-284 (302)
292 COG2304 Uncharacterized protei 98.0 9.5E-05 2.1E-09 82.8 15.8 165 559-747 35-202 (399)
293 PRK06526 transposase; Provisio 98.0 8.9E-06 1.9E-10 85.3 6.6 50 91-140 72-122 (254)
294 PRK06964 DNA polymerase III su 98.0 3.4E-05 7.3E-10 84.1 10.8 64 225-304 133-196 (342)
295 PRK08769 DNA polymerase III su 98.0 4.4E-05 9.5E-10 82.4 11.0 62 225-302 114-175 (319)
296 PF06707 DUF1194: Protein of u 97.9 0.001 2.2E-08 66.5 19.2 175 561-759 3-198 (205)
297 PRK06871 DNA polymerase III su 97.9 7.4E-05 1.6E-09 80.9 11.9 143 116-302 24-169 (325)
298 smart00187 INB Integrin beta s 97.9 0.00069 1.5E-08 74.5 18.9 201 558-764 96-340 (423)
299 cd01459 vWA_copine_like VWA Co 97.9 0.00055 1.2E-08 71.4 17.3 146 561-734 31-206 (254)
300 PRK05325 hypothetical protein; 97.9 0.001 2.2E-08 73.1 20.0 114 550-673 207-324 (401)
301 KOG3768 DEAD box RNA helicase 97.9 9.9E-05 2.1E-09 81.8 11.9 186 563-759 3-225 (888)
302 PRK08116 hypothetical protein; 97.9 3E-05 6.5E-10 82.1 7.3 54 224-289 178-237 (268)
303 PRK08181 transposase; Validate 97.8 4.8E-05 1E-09 80.3 8.6 50 91-140 79-130 (269)
304 PRK12377 putative replication 97.8 2.6E-05 5.6E-10 81.3 6.4 54 225-290 164-223 (248)
305 KOG0990 Replication factor C, 97.8 5.9E-05 1.3E-09 79.0 8.6 149 90-292 36-185 (360)
306 PLN00162 transport protein sec 97.8 0.0013 2.7E-08 79.5 20.5 196 558-760 121-391 (761)
307 PF01882 DUF58: Protein of unk 97.8 2.4E-05 5.2E-10 67.8 4.3 75 505-602 7-86 (86)
308 PF12774 AAA_6: Hydrolytic ATP 97.8 0.00021 4.6E-09 73.7 11.9 135 116-308 32-176 (231)
309 PF13337 Lon_2: Putative ATP-d 97.8 0.00061 1.3E-08 75.6 15.8 212 115-409 207-438 (457)
310 PRK08699 DNA polymerase III su 97.7 0.00026 5.6E-09 77.0 12.1 160 100-302 6-175 (325)
311 COG5148 RPN10 26S proteasome r 97.7 0.0021 4.6E-08 61.8 16.1 136 562-721 4-146 (243)
312 PF03731 Ku_N: Ku70/Ku80 N-ter 97.7 0.0007 1.5E-08 69.7 14.1 139 563-719 1-172 (224)
313 PRK06090 DNA polymerase III su 97.7 0.00034 7.3E-09 75.6 11.6 62 225-302 109-170 (319)
314 PRK07993 DNA polymerase III su 97.6 0.0003 6.5E-09 76.8 11.3 154 101-296 8-165 (334)
315 PF04285 DUF444: Protein of un 97.6 0.0028 6.1E-08 70.3 18.4 119 543-671 224-347 (421)
316 KOG2035 Replication factor C, 97.6 0.00044 9.5E-09 71.2 11.1 216 89-379 7-233 (351)
317 KOG0735 AAA+-type ATPase [Post 97.6 0.00029 6.3E-09 80.6 10.3 201 115-404 430-650 (952)
318 TIGR02653 Lon_rel_chp conserve 97.6 0.0009 1.9E-08 77.2 14.3 213 115-409 215-447 (675)
319 KOG1969 DNA replication checkp 97.6 0.00036 7.7E-09 80.3 10.5 118 225-379 388-515 (877)
320 PRK09183 transposase/IS protei 97.5 0.00015 3.3E-09 76.4 6.9 50 91-140 76-126 (259)
321 PF01695 IstB_IS21: IstB-like 97.5 2.8E-05 6.1E-10 77.1 1.0 28 113-140 44-71 (178)
322 PF13335 Mg_chelatase_2: Magne 97.5 0.00023 5E-09 63.0 6.3 55 346-401 41-95 (96)
323 KOG1808 AAA ATPase containing 97.4 8.7E-05 1.9E-09 93.8 3.6 133 115-292 439-581 (1856)
324 PRK10536 hypothetical protein; 97.4 0.00051 1.1E-08 71.3 8.5 47 91-139 51-97 (262)
325 PF13173 AAA_14: AAA domain 97.4 0.00024 5.2E-09 66.5 5.0 24 117-140 3-26 (128)
326 PF11443 DUF2828: Domain of un 97.3 0.0031 6.8E-08 71.9 14.2 137 561-713 340-476 (534)
327 PF03266 NTPase_1: NTPase; In 97.3 0.00053 1.2E-08 67.3 7.1 53 224-292 95-151 (168)
328 KOG0741 AAA+-type ATPase [Post 97.3 0.00023 4.9E-09 78.9 4.3 135 117-312 539-686 (744)
329 TIGR00627 tfb4 transcription f 97.3 0.017 3.6E-07 61.1 18.1 172 561-756 2-218 (279)
330 PTZ00395 Sec24-related protein 97.2 0.0069 1.5E-07 74.1 16.4 183 559-748 950-1183(1560)
331 PHA01747 putative ATP-dependen 97.2 0.0013 2.8E-08 70.7 9.0 88 115-260 189-280 (425)
332 PRK06921 hypothetical protein; 97.2 0.00013 2.8E-09 77.1 1.2 27 115-141 116-142 (266)
333 PRK06835 DNA replication prote 97.1 0.00023 5.1E-09 77.3 2.8 27 115-141 182-208 (329)
334 COG1618 Predicted nucleotide k 97.1 0.0017 3.7E-08 62.0 8.1 27 116-142 5-31 (179)
335 PRK07952 DNA replication prote 97.1 0.00044 9.5E-09 72.0 4.6 25 117-141 100-124 (244)
336 KOG1985 Vesicle coat complex C 97.1 0.0064 1.4E-07 70.7 13.8 188 546-749 282-514 (887)
337 KOG2227 Pre-initiation complex 97.1 0.00096 2.1E-08 73.5 6.8 219 93-389 148-386 (529)
338 KOG3347 Predicted nucleotide k 97.1 0.0017 3.7E-08 61.0 7.3 25 116-140 7-31 (176)
339 COG4547 CobT Cobalamin biosynt 97.1 0.0073 1.6E-07 65.7 12.8 145 561-722 413-589 (620)
340 COG1484 DnaC DNA replication p 97.0 0.00094 2E-08 70.1 6.1 27 115-141 104-130 (254)
341 PRK07276 DNA polymerase III su 97.0 0.0044 9.4E-08 66.1 10.5 57 224-295 104-160 (290)
342 KOG1514 Origin recognition com 97.0 0.0033 7.2E-08 72.4 10.1 139 225-404 509-657 (767)
343 TIGR00578 ku70 ATP-dependent D 97.0 0.012 2.7E-07 69.0 15.2 137 562-718 11-180 (584)
344 PF13604 AAA_30: AAA domain; P 97.0 0.00098 2.1E-08 67.3 5.3 59 225-296 94-156 (196)
345 COG3267 ExeA Type II secretory 96.9 0.0051 1.1E-07 63.1 9.9 131 226-396 133-267 (269)
346 PF13401 AAA_22: AAA domain; P 96.9 0.00012 2.7E-09 68.2 -1.6 26 116-141 4-29 (131)
347 COG2766 PrkA Putative Ser prot 96.9 0.0012 2.6E-08 73.9 5.7 196 94-296 75-331 (649)
348 COG5151 SSL1 RNA polymerase II 96.9 0.021 4.4E-07 59.2 14.0 167 562-758 88-266 (421)
349 COG2718 Uncharacterized conser 96.8 0.02 4.4E-07 61.5 13.7 119 543-671 224-347 (423)
350 PF03850 Tfb4: Transcription f 96.7 0.088 1.9E-06 55.8 17.6 162 562-746 2-208 (276)
351 PF03969 AFG1_ATPase: AFG1-lik 96.7 0.0015 3.3E-08 71.9 4.5 27 115-141 61-87 (362)
352 PRK05917 DNA polymerase III su 96.7 0.0081 1.8E-07 63.9 9.8 57 225-296 96-152 (290)
353 KOG0736 Peroxisome assembly fa 96.6 0.0064 1.4E-07 70.7 8.9 143 118-312 433-576 (953)
354 PF00910 RNA_helicase: RNA hel 96.6 0.0031 6.6E-08 57.0 5.1 50 225-275 50-106 (107)
355 COG5242 TFB4 RNA polymerase II 96.5 0.32 6.8E-06 48.6 18.4 169 560-758 19-225 (296)
356 KOG1327 Copine [Signal transdu 96.5 0.049 1.1E-06 61.6 14.4 151 561-738 285-467 (529)
357 COG3864 Uncharacterized protei 96.3 0.013 2.7E-07 61.1 7.8 96 562-674 262-357 (396)
358 PRK08939 primosomal protein Dn 96.3 0.0012 2.7E-08 71.2 0.5 26 116-141 156-181 (306)
359 PF05729 NACHT: NACHT domain 96.2 0.0074 1.6E-07 58.2 5.8 25 118-142 2-26 (166)
360 PRK13695 putative NTPase; Prov 96.2 0.0084 1.8E-07 59.1 6.2 70 224-312 96-169 (174)
361 TIGR01448 recD_rel helicase, p 96.2 0.0092 2E-07 71.9 7.3 26 116-141 338-363 (720)
362 PF11265 Med25_VWA: Mediator c 96.2 0.4 8.7E-06 48.9 17.8 166 560-742 12-204 (226)
363 PF05272 VirE: Virulence-assoc 96.1 0.013 2.8E-07 59.2 7.0 70 226-296 97-168 (198)
364 cd01120 RecA-like_NTPases RecA 96.1 0.0063 1.4E-07 58.3 4.6 23 119-141 2-24 (165)
365 PF03215 Rad17: Rad17 cell cyc 96.1 0.17 3.7E-06 58.5 16.9 24 118-141 47-70 (519)
366 PRK04296 thymidine kinase; Pro 96.1 0.015 3.2E-07 58.4 7.3 22 119-140 5-26 (190)
367 KOG2487 RNA polymerase II tran 96.1 0.17 3.7E-06 51.9 14.4 173 560-758 22-238 (314)
368 PRK05818 DNA polymerase III su 96.1 0.0072 1.6E-07 63.0 4.8 54 225-292 89-142 (261)
369 TIGR01613 primase_Cterm phage/ 95.9 0.12 2.5E-06 56.0 13.7 71 225-296 129-202 (304)
370 PF07002 Copine: Copine; Inte 95.9 0.099 2.2E-06 50.0 11.4 119 577-720 11-146 (146)
371 PHA02624 large T antigen; Prov 95.9 0.03 6.5E-07 64.6 9.0 29 114-142 429-457 (647)
372 PHA02774 E1; Provisional 95.8 0.023 5E-07 65.3 8.0 28 114-141 432-459 (613)
373 PRK10875 recD exonuclease V su 95.8 0.02 4.4E-07 67.4 7.8 49 225-287 266-318 (615)
374 KOG1984 Vesicle coat complex C 95.7 0.19 4.2E-06 59.2 14.8 181 558-745 414-636 (1007)
375 PRK07132 DNA polymerase III su 95.7 0.068 1.5E-06 57.5 10.6 58 224-296 90-147 (299)
376 PF05970 PIF1: PIF1-like helic 95.7 0.022 4.7E-07 63.3 6.9 29 114-142 20-48 (364)
377 TIGR01447 recD exodeoxyribonuc 95.7 0.028 6E-07 66.1 8.0 27 225-251 260-286 (586)
378 PF13207 AAA_17: AAA domain; P 95.6 0.0071 1.5E-07 55.5 2.5 22 119-140 2-23 (121)
379 PF13191 AAA_16: AAA ATPase do 95.6 0.0087 1.9E-07 59.0 3.1 46 97-142 2-50 (185)
380 KOG2170 ATPase of the AAA+ sup 95.6 0.0087 1.9E-07 62.7 3.1 56 219-280 173-228 (344)
381 PF13671 AAA_33: AAA domain; P 95.5 0.0092 2E-07 56.4 2.8 23 119-141 2-24 (143)
382 cd01129 PulE-GspE PulE/GspE Th 95.5 0.058 1.2E-06 57.1 9.0 28 114-141 78-105 (264)
383 PRK14700 recombination factor 95.5 0.042 9.2E-07 58.2 7.8 104 267-401 8-114 (300)
384 KOG1051 Chaperone HSP104 and r 95.4 0.017 3.7E-07 69.5 5.1 149 94-299 185-351 (898)
385 PF00362 Integrin_beta: Integr 95.2 0.22 4.8E-06 56.1 12.9 199 559-764 100-343 (426)
386 PRK08118 topology modulation p 95.1 0.016 3.4E-07 56.9 3.0 24 118-141 3-26 (167)
387 COG4566 TtrR Response regulato 95.1 0.024 5.3E-07 55.5 4.1 43 21-71 84-126 (202)
388 COG1936 Predicted nucleotide k 95.0 0.027 5.9E-07 54.7 4.3 21 118-138 2-22 (180)
389 COG4178 ABC-type uncharacteriz 95.0 0.018 3.8E-07 66.7 3.6 28 115-142 418-445 (604)
390 TIGR00150 HI0065_YjeE ATPase, 94.9 0.076 1.7E-06 49.9 7.0 34 108-141 14-47 (133)
391 PRK13826 Dtr system oriT relax 94.9 0.12 2.6E-06 64.4 10.5 59 224-296 468-530 (1102)
392 PF13238 AAA_18: AAA domain; P 94.9 0.017 3.6E-07 53.2 2.5 22 119-140 1-22 (129)
393 cd02019 NK Nucleoside/nucleoti 94.9 0.021 4.6E-07 47.1 2.8 22 119-140 2-23 (69)
394 PRK07261 topology modulation p 94.6 0.025 5.4E-07 55.7 3.0 24 118-141 2-25 (171)
395 PHA00729 NTP-binding motif con 94.6 0.022 4.9E-07 58.3 2.7 24 117-140 18-41 (226)
396 COG0563 Adk Adenylate kinase a 94.5 0.027 5.9E-07 55.8 3.0 24 118-141 2-25 (178)
397 PF13245 AAA_19: Part of AAA d 94.5 0.033 7.2E-07 47.0 3.0 24 117-140 11-35 (76)
398 PRK00131 aroK shikimate kinase 94.5 0.032 7E-07 54.5 3.4 26 116-141 4-29 (175)
399 COG4930 Predicted ATP-dependen 94.4 0.31 6.6E-06 53.0 10.6 167 214-408 268-454 (683)
400 PF02562 PhoH: PhoH-like prote 94.4 0.015 3.2E-07 58.9 0.7 28 224-251 119-146 (205)
401 TIGR01359 UMP_CMP_kin_fam UMP- 94.4 0.03 6.6E-07 55.4 3.0 23 119-141 2-24 (183)
402 COG0572 Udk Uridine kinase [Nu 94.4 0.24 5.3E-06 50.3 9.5 23 119-141 11-33 (218)
403 PF13148 DUF3987: Protein of u 94.3 0.02 4.3E-07 63.8 1.8 166 225-405 150-363 (378)
404 TIGR01420 pilT_fam pilus retra 94.3 0.13 2.8E-06 56.6 8.2 27 115-141 121-147 (343)
405 PRK08233 hypothetical protein; 94.3 0.033 7.1E-07 54.9 3.1 24 118-141 5-28 (182)
406 PTZ00202 tuzin; Provisional 94.3 0.19 4.1E-06 56.1 9.1 51 91-141 258-311 (550)
407 PRK03839 putative kinase; Prov 94.2 0.033 7.1E-07 55.2 3.0 24 118-141 2-25 (180)
408 PRK13889 conjugal transfer rel 94.2 0.066 1.4E-06 66.1 6.1 55 224-291 433-491 (988)
409 PRK06762 hypothetical protein; 94.2 0.034 7.3E-07 54.2 3.0 24 118-141 4-27 (166)
410 TIGR02768 TraA_Ti Ti-type conj 94.2 0.058 1.2E-06 65.4 5.5 26 224-249 439-464 (744)
411 TIGR01313 therm_gnt_kin carboh 94.1 0.034 7.3E-07 54.1 2.7 23 119-141 1-23 (163)
412 PTZ00301 uridine kinase; Provi 94.1 0.25 5.4E-06 50.4 9.0 22 119-140 6-27 (210)
413 PF06309 Torsin: Torsin; Inte 94.0 0.068 1.5E-06 49.5 4.3 45 97-141 27-78 (127)
414 cd00227 CPT Chloramphenicol (C 94.0 0.039 8.4E-07 54.4 2.9 24 118-141 4-27 (175)
415 PRK14532 adenylate kinase; Pro 94.0 0.041 8.9E-07 54.8 3.1 24 118-141 2-25 (188)
416 PF01443 Viral_helicase1: Vira 94.0 0.1 2.2E-06 53.7 6.1 21 119-139 1-21 (234)
417 cd02021 GntK Gluconate kinase 93.9 0.043 9.4E-07 52.4 3.0 23 119-141 2-24 (150)
418 cd00464 SK Shikimate kinase (S 93.8 0.044 9.6E-07 52.4 2.9 24 118-141 1-24 (154)
419 PF01637 Arch_ATPase: Archaeal 93.8 0.061 1.3E-06 54.9 4.1 45 97-141 1-45 (234)
420 TIGR02858 spore_III_AA stage I 93.8 0.12 2.7E-06 54.7 6.4 26 117-142 112-137 (270)
421 COG5028 Vesicle coat complex C 93.8 0.58 1.3E-05 54.7 12.0 190 546-750 264-491 (861)
422 PRK13947 shikimate kinase; Pro 93.7 0.047 1E-06 53.4 3.0 24 118-141 3-26 (171)
423 PF13086 AAA_11: AAA domain; P 93.7 0.076 1.6E-06 54.2 4.6 22 119-140 20-41 (236)
424 TIGR02322 phosphon_PhnN phosph 93.7 0.05 1.1E-06 53.7 3.1 24 118-141 3-26 (179)
425 PRK06217 hypothetical protein; 93.7 0.051 1.1E-06 54.0 3.1 24 118-141 3-26 (183)
426 PRK14530 adenylate kinase; Pro 93.5 0.059 1.3E-06 55.1 3.3 25 117-141 4-28 (215)
427 PF13521 AAA_28: AAA domain; P 93.5 0.059 1.3E-06 52.4 3.2 21 119-139 2-22 (163)
428 TIGR01360 aden_kin_iso1 adenyl 93.4 0.055 1.2E-06 53.6 2.9 25 117-141 4-28 (188)
429 cd01428 ADK Adenylate kinase ( 93.4 0.058 1.3E-06 53.8 3.0 24 118-141 1-24 (194)
430 PF13555 AAA_29: P-loop contai 93.4 0.067 1.5E-06 43.1 2.8 24 118-141 25-48 (62)
431 cd01130 VirB11-like_ATPase Typ 93.3 0.11 2.3E-06 52.0 4.8 28 115-142 24-51 (186)
432 PF09848 DUF2075: Uncharacteri 93.3 0.052 1.1E-06 59.9 2.8 23 118-140 3-25 (352)
433 PRK13949 shikimate kinase; Pro 93.3 0.066 1.4E-06 52.6 3.1 24 118-141 3-26 (169)
434 PRK13900 type IV secretion sys 93.2 0.091 2E-06 57.4 4.3 28 115-142 159-186 (332)
435 COG1485 Predicted ATPase [Gene 93.2 0.069 1.5E-06 57.5 3.3 30 113-142 62-91 (367)
436 cd02020 CMPK Cytidine monophos 93.2 0.069 1.5E-06 50.5 3.0 23 119-141 2-24 (147)
437 PRK14531 adenylate kinase; Pro 93.1 0.069 1.5E-06 53.1 2.9 25 117-141 3-27 (183)
438 PRK06547 hypothetical protein; 93.0 0.074 1.6E-06 52.5 3.0 25 117-141 16-40 (172)
439 TIGR01618 phage_P_loop phage n 93.0 0.062 1.3E-06 55.1 2.6 22 116-137 12-33 (220)
440 PRK00625 shikimate kinase; Pro 93.0 0.073 1.6E-06 52.5 3.0 24 118-141 2-25 (173)
441 PRK10078 ribose 1,5-bisphospho 93.0 0.076 1.7E-06 52.9 3.2 25 117-141 3-27 (186)
442 cd02023 UMPK Uridine monophosp 92.9 0.072 1.6E-06 53.6 2.9 23 119-141 2-24 (198)
443 COG1102 Cmk Cytidylate kinase 92.9 0.069 1.5E-06 51.3 2.5 23 119-141 3-25 (179)
444 PRK13851 type IV secretion sys 92.9 0.08 1.7E-06 58.0 3.4 28 115-142 161-188 (344)
445 cd02027 APSK Adenosine 5'-phos 92.9 0.067 1.4E-06 51.4 2.5 23 119-141 2-24 (149)
446 PRK04040 adenylate kinase; Pro 92.8 0.075 1.6E-06 53.2 2.7 24 118-141 4-27 (188)
447 COG4619 ABC-type uncharacteriz 92.8 0.086 1.9E-06 51.0 2.9 27 116-142 29-55 (223)
448 PRK05480 uridine/cytidine kina 92.7 0.079 1.7E-06 53.8 2.9 25 117-141 7-31 (209)
449 PF00437 T2SE: Type II/IV secr 92.7 0.066 1.4E-06 56.7 2.4 28 115-142 126-153 (270)
450 KOG1986 Vesicle coat complex C 92.7 8.3 0.00018 45.1 19.0 195 559-760 119-378 (745)
451 PF00485 PRK: Phosphoribulokin 92.7 0.063 1.4E-06 53.9 2.1 24 119-142 2-25 (194)
452 PRK02496 adk adenylate kinase; 92.7 0.082 1.8E-06 52.5 2.9 24 118-141 3-26 (184)
453 TIGR02782 TrbB_P P-type conjug 92.6 0.13 2.8E-06 55.5 4.4 27 115-141 131-157 (299)
454 cd00071 GMPK Guanosine monopho 92.6 0.093 2E-06 49.7 3.0 23 119-141 2-24 (137)
455 TIGR00235 udk uridine kinase. 92.6 0.086 1.9E-06 53.5 2.9 25 117-141 7-31 (207)
456 TIGR01351 adk adenylate kinase 92.5 0.093 2E-06 53.4 3.1 23 119-141 2-24 (210)
457 COG0703 AroK Shikimate kinase 92.5 0.11 2.5E-06 50.7 3.5 25 117-141 3-27 (172)
458 PRK00300 gmk guanylate kinase; 92.5 0.092 2E-06 53.0 3.0 26 116-141 5-30 (205)
459 TIGR03263 guanyl_kin guanylate 92.5 0.088 1.9E-06 51.9 2.8 25 118-142 3-27 (180)
460 PF01583 APS_kinase: Adenylyls 92.5 0.08 1.7E-06 51.2 2.4 24 118-141 4-27 (156)
461 TIGR02538 type_IV_pilB type IV 92.5 0.4 8.6E-06 56.4 8.6 29 113-141 313-341 (564)
462 cd01131 PilT Pilus retraction 92.4 0.096 2.1E-06 52.9 3.0 25 117-141 2-26 (198)
463 PRK05541 adenylylsulfate kinas 92.3 0.088 1.9E-06 51.9 2.5 25 117-141 8-32 (176)
464 PRK13948 shikimate kinase; Pro 92.3 0.18 3.9E-06 50.2 4.7 27 115-141 9-35 (182)
465 PRK05057 aroK shikimate kinase 92.3 0.12 2.6E-06 51.0 3.3 26 116-141 4-29 (172)
466 PRK00279 adk adenylate kinase; 92.2 0.11 2.3E-06 53.2 3.0 24 118-141 2-25 (215)
467 KOG4465 Uncharacterized conser 92.1 0.75 1.6E-05 49.0 9.1 105 558-673 424-533 (598)
468 PRK14527 adenylate kinase; Pro 92.1 0.11 2.4E-06 51.9 3.0 25 117-141 7-31 (191)
469 PLN02200 adenylate kinase fami 92.0 0.11 2.5E-06 53.8 3.0 24 118-141 45-68 (234)
470 PRK09825 idnK D-gluconate kina 92.0 0.12 2.6E-06 51.2 3.1 25 117-141 4-28 (176)
471 TIGR02533 type_II_gspE general 92.0 0.52 1.1E-05 54.3 8.7 27 115-141 241-267 (486)
472 COG1855 ATPase (PilT family) [ 92.0 0.15 3.3E-06 56.3 4.0 37 102-143 254-290 (604)
473 PHA02530 pseT polynucleotide k 91.8 0.12 2.5E-06 55.7 3.0 24 118-141 4-27 (300)
474 COG4088 Predicted nucleotide k 91.8 0.095 2.1E-06 52.3 2.0 23 119-141 4-26 (261)
475 PTZ00088 adenylate kinase 1; P 91.8 0.12 2.7E-06 53.4 3.0 24 118-141 8-31 (229)
476 PRK14528 adenylate kinase; Pro 91.8 0.13 2.7E-06 51.4 2.9 24 118-141 3-26 (186)
477 cd01918 HprK_C HprK/P, the bif 91.7 0.13 2.9E-06 49.2 2.9 25 115-139 13-37 (149)
478 COG1084 Predicted GTPase [Gene 91.7 0.64 1.4E-05 49.8 8.1 34 109-142 161-194 (346)
479 PF06048 DUF927: Domain of unk 91.7 0.2 4.3E-06 53.7 4.6 29 113-141 190-218 (286)
480 KOG2228 Origin recognition com 91.7 0.51 1.1E-05 50.6 7.3 43 97-139 26-72 (408)
481 PF08477 Miro: Miro-like prote 91.7 0.14 2.9E-06 46.5 2.8 24 118-141 1-24 (119)
482 TIGR02173 cyt_kin_arch cytidyl 91.7 0.14 3.1E-06 49.8 3.1 23 119-141 3-25 (171)
483 cd02024 NRK1 Nicotinamide ribo 91.6 0.14 3.1E-06 51.1 3.1 24 119-142 2-25 (187)
484 cd00820 PEPCK_HprK Phosphoenol 91.6 0.13 2.7E-06 46.5 2.4 21 117-137 16-36 (107)
485 TIGR03574 selen_PSTK L-seryl-t 91.5 0.12 2.5E-06 54.2 2.5 23 119-141 2-24 (249)
486 PRK06696 uridine kinase; Valid 91.5 0.12 2.6E-06 53.2 2.5 24 118-141 24-47 (223)
487 PRK04182 cytidylate kinase; Pr 91.5 0.15 3.3E-06 50.0 3.1 24 118-141 2-25 (180)
488 PRK00889 adenylylsulfate kinas 91.4 0.13 2.8E-06 50.6 2.5 25 117-141 5-29 (175)
489 cd02028 UMPK_like Uridine mono 91.2 0.14 3E-06 50.8 2.6 23 119-141 2-24 (179)
490 COG1116 TauB ABC-type nitrate/ 91.2 0.15 3.2E-06 52.6 2.8 27 116-142 29-55 (248)
491 cd01124 KaiC KaiC is a circadi 91.1 0.15 3.3E-06 50.4 2.8 21 119-139 2-22 (187)
492 PRK14526 adenylate kinase; Pro 91.1 0.16 3.6E-06 51.7 3.0 24 118-141 2-25 (211)
493 COG1124 DppF ABC-type dipeptid 91.1 0.14 3E-06 52.6 2.3 27 116-142 33-59 (252)
494 PRK03731 aroL shikimate kinase 91.0 0.18 3.9E-06 49.3 3.1 25 117-141 3-27 (171)
495 COG1126 GlnQ ABC-type polar am 90.9 0.16 3.4E-06 51.3 2.6 25 116-140 28-52 (240)
496 PRK13833 conjugal transfer pro 90.9 0.18 4E-06 54.7 3.3 26 115-140 143-168 (323)
497 PF02367 UPF0079: Uncharacteri 90.9 0.27 5.9E-06 45.5 3.9 28 114-141 13-40 (123)
498 PLN02318 phosphoribulokinase/u 90.7 3.1 6.6E-05 48.6 12.9 43 99-141 47-90 (656)
499 cd02025 PanK Pantothenate kina 90.7 0.16 3.6E-06 52.1 2.6 23 119-141 2-24 (220)
500 PRK04132 replication factor C 90.6 0.14 3.1E-06 62.1 2.4 44 89-132 13-56 (846)
No 1
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=100.00 E-value=1.5e-88 Score=791.99 Aligned_cols=619 Identities=43% Similarity=0.683 Sum_probs=504.0
Q ss_pred CCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccc
Q 004256 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (765)
|||++|+||+.++++|+++++++..++|||.|++|||||++||+||+++|.+.++++|+|+|+|+.|..||..|......
T Consensus 1 ~pf~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~ 80 (633)
T TIGR02442 1 FPFTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRP 80 (633)
T ss_pred CCcchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999884321
Q ss_pred cccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcC
Q 004256 172 DTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG 251 (765)
Q Consensus 172 ~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~ 251 (765)
. .....||+.+|++.++++|||++|+++.+.+|...+++|+|.+|++||||||||++|++.+|+.|+++|++|
T Consensus 81 ~-------~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g 153 (633)
T TIGR02442 81 S-------EQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMG 153 (633)
T ss_pred c-------ccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcC
Confidence 1 114689999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcH
Q 004256 252 VNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDL 331 (765)
Q Consensus 252 ~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~ 331 (765)
.+.++|.|.+..+|++|+||+|+||+++.|+++|+|||++++.+..+...+.+.+|+.....|...+..+...|......
T Consensus 154 ~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 233 (633)
T TIGR02442 154 VNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEE 233 (633)
T ss_pred CEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999998888776677888888887766655555555555554456
Q ss_pred HHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCcCCCC
Q 004256 332 AKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSIINE 411 (765)
Q Consensus 332 ~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~hR~~~~~ 411 (765)
+...+..++.+.+.|.++++++++|+++|..+|+.|+|+.+.++++|+++|+|+|+++|+.+||.+|+.+||.||+++.|
T Consensus 234 l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~hR~~~~p 313 (633)
T TIGR02442 234 LRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVLPHRRRRKP 313 (633)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHhhhhccCCC
Confidence 66788899999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred CCCCC---CCC---C-CCCCCCCCCCCCCCcccCccc-ccC-CC-CCccchhcccCCC---cccccccCCCCcCchhhhH
Q 004256 412 TPPEQ---QNQ---Q-PPPPPPPQNQDSGEEEQNEEE-DQE-DE-NDEENEQQQEQLP---EEFIFDAEGGLVDEKLLFF 478 (765)
Q Consensus 412 ~~~~~---~~~---~-~~~~~~~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 478 (765)
.+.++ +++ + ++|+|+++..++++++..+++ ++. ++ ++++++.+....+ .+.+++++. .+.++++.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 392 (633)
T TIGR02442 314 FEQPQGKDEKDLEEKPEEPGPDPEKPDEGEDDAEQSGPRGHPTPGNDDEKEPDPQEEADGQGSSTDPAGD-IFRIRVLAP 392 (633)
T ss_pred cccCCCCCccccccccCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCcccccCccc-ccCcchhcc
Confidence 22111 100 0 111111100011111000000 000 00 0000000000001 123466555 445566654
Q ss_pred HHHhhhhcCCCCCcccccccCCCCcccccCCCCCCCCccchhHHHHhcCCchhhhhhcccccCceeEEeccchhhhhhhc
Q 004256 479 AQQAQRRRGKAGRAKNVIFSEDRGRYIKPMLPKGPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMAR 558 (765)
Q Consensus 479 ~~~~~~~~~~~g~~~~~~~~~~~Gr~~r~~~~~~~~~~id~~~Tlraaap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~ 558 (765)
... + .++++||+. ...+..+|||+++..++++.++|||.+|||+++|||+.|. + .+.|.++|++++++++
T Consensus 393 ~~~-~-~~~~~g~~~-~~~~~~rGr~~~~~~~~~~~~~i~~~aTlr~aa~~q~~r~------~-~~~i~~~dl~~~~~~~ 462 (633)
T TIGR02442 393 PQA-R-ARGASGRRS-RTRSDSRGRYVRARRNRGPPDDLAVDATLRAAAPHQRARP------G-AVAVEPEDLREKIRAG 462 (633)
T ss_pred ccc-c-ccCCCCCCc-ccccCCCCeeeeccCCCCCCCccCHHHHHHHhcccccccC------C-cceechhhhhHHHhcC
Confidence 322 1 223456543 4444689999999987756779999999999999998761 2 5899999999999999
Q ss_pred cCCceEEEEEeCCCCCCc-hhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCCh
Q 004256 559 KAGALVIFVVDASGSMAL-NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSP 637 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~-~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~gG~T~ 637 (765)
+.+..++||||+||||.+ +||..+|+++..|+.++|..+|+|+||+|+++.+++++|+|.+...+...|..+++||+||
T Consensus 463 r~~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a~~~~p~t~~~~~~~~~L~~l~~gG~Tp 542 (633)
T TIGR02442 463 RAGNLVIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEAEVLLPPTSSVELAARRLEELPTGGRTP 542 (633)
T ss_pred CCCceEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEcCCCCCHHHHHHHHHhCCCCCCCC
Confidence 999999999999999986 6999999999999999999999999999998668999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEEE
Q 004256 638 LAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLVI 717 (765)
Q Consensus 638 l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vi 717 (765)
|+.||..|++++..........+++|||||||++|++ +.. ....+++..+++.+++.||.+++|
T Consensus 543 l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~-~~~---------------~~~~~~~~~~a~~l~~~~i~~~vI 606 (633)
T TIGR02442 543 LAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVA-DGG---------------EPPTDDARTIAAKLAARGILFVVI 606 (633)
T ss_pred HHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCC-CCC---------------CChHHHHHHHHHHHHhcCCeEEEE
Confidence 9999999999988543334345779999999999986 110 013467888999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHcCCeEEEcC
Q 004256 718 DTENKFVSTGFAKEIARVAQGKYYYLP 744 (765)
Q Consensus 718 g~~~~~~~~~~l~~LA~~~gG~y~~~~ 744 (765)
+++.+++..+++++||+.+||+||+++
T Consensus 607 dt~~~~~~~~~~~~lA~~~gg~y~~l~ 633 (633)
T TIGR02442 607 DTESGFVRLGLAEDLARALGGEYVRLD 633 (633)
T ss_pred eCCCCCcchhHHHHHHHhhCCeEEecC
Confidence 999888889999999999999999875
No 2
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=100.00 E-value=1.1e-87 Score=767.63 Aligned_cols=570 Identities=34% Similarity=0.517 Sum_probs=469.2
Q ss_pred chHHHHHHHHhhhcC-CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCccc
Q 004256 100 QDAIKTALLLGAIDR-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLK 178 (765)
Q Consensus 100 ~~~~~~aL~l~~~~~-~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (765)
|+.+|.+|++.+++| ..++|||.|++||+||+++|+++.++|.
T Consensus 8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~------------------------------------ 51 (584)
T PRK13406 8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPA------------------------------------ 51 (584)
T ss_pred HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCC------------------------------------
Confidence 889999999999999 9999999999999999999999999983
Q ss_pred ccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEEEeC
Q 004256 179 TQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVERE 258 (765)
Q Consensus 179 ~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~ 258 (765)
..||+.+|.++|++.|+|++|+++++.+|...++||+|++||+|||||||+|++++++++.|+++|++|.++|+|+
T Consensus 52 ----~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~ 127 (584)
T PRK13406 52 ----GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERD 127 (584)
T ss_pred ----CCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEeeCceEEEEeecCC--CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHH
Q 004256 259 GISFKHPCKPLLIATYNPE--EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQI 336 (765)
Q Consensus 259 G~~~~~p~~~~lIat~N~~--eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 336 (765)
|.++.+|++|.|||+.|+. ++.++++|+|||+++|++..+...+.+. ......++
T Consensus 128 G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~-----------------------~~~~~~~I 184 (584)
T PRK13406 128 GLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRDARE-----------------------IPIDADDI 184 (584)
T ss_pred CcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHHhcc-----------------------cCCCHHHH
Confidence 9999999999999997753 4669999999999999888654333210 01122367
Q ss_pred HHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCcCCCCCCCCC
Q 004256 337 ILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSIINETPPEQ 416 (765)
Q Consensus 337 l~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~hR~~~~~~~~~~ 416 (765)
..++.+.+||.++++++++++++|..+|+.|+|+.+.++++|+++|+|+|+++|+.+||.+|+.+||.||++..|.+++
T Consensus 185 ~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL~hR~~~~p~~~~- 263 (584)
T PRK13406 185 AAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVLAPRATRLPAPPQ- 263 (584)
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhccCCCCCCC-
Confidence 7777777899999999999999999999999999999999999999999999999999999999999999986552211
Q ss_pred CCCCCCCCCCCCCCCCCCcccCcccccCCCCCccchhcccCCCcccccccCCCCcCchhhhHHHH--hhhhcCCCCCccc
Q 004256 417 QNQQPPPPPPPQNQDSGEEEQNEEEDQEDENDEENEQQQEQLPEEFIFDAEGGLVDEKLLFFAQQ--AQRRRGKAGRAKN 494 (765)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~ 494 (765)
+++++|+|++++.++++++ ++ +++ + ++.+....+++.++++....++++++.+... .+.+++++||++.
T Consensus 264 -~~~~~~~~~~~~~~~~~~~--~~---~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~g~ 334 (584)
T PRK13406 264 -PPEEEPPPPPPPPEDDDDP--PE---DEE--E-QDDAEDRALEEIVLEAVRAALPPDLLARLAAGGARARARSAGGAGA 334 (584)
T ss_pred -CCCCCCCCCCCCCCCCccc--cc---ccc--c-cccCCCCCchhhccccccccCChhhhhhcccccccccccCCCCccc
Confidence 1111111111111100000 00 000 0 0001111245667888777888887765431 1122234555444
Q ss_pred ccccCCCCcccccCCCCC-CCCccchhHHHHhcCCchhhhhhcccccCceeEEeccchhhhhhhccCCceEEEEEeCCCC
Q 004256 495 VIFSEDRGRYIKPMLPKG-PIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGS 573 (765)
Q Consensus 495 ~~~~~~~Gr~~r~~~~~~-~~~~id~~~Tlraaap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~~~~~~vv~vvD~SgS 573 (765)
.+.+..+|||+++..+.. +..+|||++|||+|+|||+.|+.... .+..+.|+++||++++++.+++..++||||+|||
T Consensus 335 ~~~~~~rGr~~~~~~~~~~~~~~l~~~aTlraAap~Q~~r~~~~~-~~~~~~i~~~Dlr~k~~~~~~~~~vvfvvD~SGS 413 (584)
T PRK13406 335 AQKGNRRGRPLGSRPGEPRGGARLDLIETLRAAAPWQPLRRRQAG-TARRLLVRPDDFRIRRFKQRSETTTIFVVDASGS 413 (584)
T ss_pred ccccCCCcccccccCCCCCCCCcccHHHHHHHhhhhhhhcccccC-CCCcceecHHHceehhhhccCCccEEEEEECCCC
Confidence 556679999999887652 23579999999999999999986432 2346999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCChhHHHHHHHHHHHHhhh
Q 004256 574 MALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLSMAVRVGLNAE 653 (765)
Q Consensus 574 M~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~gG~T~l~~aL~~A~~~l~~~~ 653 (765)
|.++||..+|+++..||.++|.++|+|+||+|++..+++++|+|++...+.+.|+.|++||||||++||..|++++.+..
T Consensus 414 M~~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~~~lppT~~~~~~~~~L~~l~~gGgTpL~~gL~~A~~~l~~~~ 493 (584)
T PRK13406 414 AALHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAELLLPPTRSLVRAKRSLAGLPGGGGTPLAAGLDAAAALALQVR 493 (584)
T ss_pred CcHhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCceeEEcCCCcCHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhc
Confidence 98899999999999999999999999999999887799999999999999999999999999999999999999987764
Q ss_pred ccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHH
Q 004256 654 KSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIA 733 (765)
Q Consensus 654 ~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA 733 (765)
.++ .+++|||||||++|++.++.. ++.....++..+++.++..||.+++|+++..+ .+++++||
T Consensus 494 ~~~--~~~~iVLlTDG~~n~~~~~~~------------~~~~~~~~~~~~a~~~~~~gi~~~vId~g~~~--~~~~~~LA 557 (584)
T PRK13406 494 RKG--MTPTVVLLTDGRANIARDGTA------------GRAQAEEDALAAARALRAAGLPALVIDTSPRP--QPQARALA 557 (584)
T ss_pred cCC--CceEEEEEeCCCCCCCccccc------------cccchhhHHHHHHHHHHhcCCeEEEEecCCCC--cHHHHHHH
Confidence 433 367899999999999875321 11223456788899999999999999999764 56899999
Q ss_pred HHcCCeEEEcCCCChHHHHHHHHHHH
Q 004256 734 RVAQGKYYYLPNASDAVISATTKDAL 759 (765)
Q Consensus 734 ~~~gG~y~~~~~~~~~~l~~~~~~~~ 759 (765)
+.+||+||++++++++.|.++|+.++
T Consensus 558 ~~~gg~y~~l~~~~a~~~~~~v~~~~ 583 (584)
T PRK13406 558 EAMGARYLPLPRADAGRLSQAVRAAT 583 (584)
T ss_pred HhcCCeEEECCCCCHHHHHHHHHhhc
Confidence 99999999999999999999998764
No 3
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=100.00 E-value=2e-86 Score=765.50 Aligned_cols=585 Identities=51% Similarity=0.755 Sum_probs=480.7
Q ss_pred hHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCccccc
Q 004256 101 DAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQ 180 (765)
Q Consensus 101 ~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (765)
+.+|++|++++++|..+||||.|++|||||++||+||+++++
T Consensus 1 ~~~~~Al~l~av~p~~g~vLl~G~~GtgKs~lar~l~~~~~~-------------------------------------- 42 (589)
T TIGR02031 1 ERAKLALTLLAVDPSLGGVAIRARAGTGKTALARALAEILPP-------------------------------------- 42 (589)
T ss_pred ChHHHHHHHhccCCCcceEEEEcCCCcHHHHHHHHHHHhCCc--------------------------------------
Confidence 367999999999999999999999999999999999999873
Q ss_pred ccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCe
Q 004256 181 IARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGI 260 (765)
Q Consensus 181 ~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~ 260 (765)
..||+.++.+.+++.|+|++|+++.+.+|...+++|+|.+||+|||||||||+|++.+|+.|+++|++|.++++|.|.
T Consensus 43 --~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~ 120 (589)
T TIGR02031 43 --IMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGI 120 (589)
T ss_pred --CCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCC
Confidence 468999999999999999999998888999899999999999999999999999999999999999999999999999
Q ss_pred eEEeeCceEEEEeecCCC--CCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHH
Q 004256 261 SFKHPCKPLLIATYNPEE--GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIIL 338 (765)
Q Consensus 261 ~~~~p~~~~lIat~N~~e--g~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~ 338 (765)
+..+|++|+||||+|+++ |.|+++|+|||+++|.+..++..++|.+|+..... .+...+..........+..
T Consensus 121 ~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~------~~~~~~~~~~~~~~~~i~~ 194 (589)
T TIGR02031 121 SVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERC------NEVFRMNDELELLRGQIEA 194 (589)
T ss_pred ceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHH------hhhhhcchhhHHHHHHHHH
Confidence 999999999999999976 89999999999999888877778888888876531 1222233344567788899
Q ss_pred HhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCcCCCCCCCCCCC
Q 004256 339 AREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSIINETPPEQQN 418 (765)
Q Consensus 339 a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~hR~~~~~~~~~~~~ 418 (765)
++.+.+.|.++++++++|+++|...|+.|+|+.+.++++|+++|+|+|+++|+++||.+|+.+||.||++..+.++ ++
T Consensus 195 ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~hR~~~~p~~~--~~ 272 (589)
T TIGR02031 195 ARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVELVLLPRATRLPEPE--PQ 272 (589)
T ss_pred HHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhccCCCCCC--CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998654221 11
Q ss_pred CCCCCCCCCCCCCCCCcccCcccccCCCCCccchhcccCCCcccccccCCCCcCchhhhHHHHhhhhcCCCCCccccccc
Q 004256 419 QQPPPPPPPQNQDSGEEEQNEEEDQEDENDEENEQQQEQLPEEFIFDAEGGLVDEKLLFFAQQAQRRRGKAGRAKNVIFS 498 (765)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 498 (765)
++++|+| +++.+.++.+ +++ ++.+ ++ ++.++.+.+++.++++....++++++.+.....+ + .|+++..+.+
T Consensus 273 ~~~~~~~-~~~~~~~~~~-~~~-~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~ 343 (589)
T TIGR02031 273 PPPPPPP-PEPPEPEEEP-DEP-DQTD--PD-DGEETDQIPEELMFDAVEADLPDNILATLQTVQR-R--RGRAGGEQKS 343 (589)
T ss_pred CCCCCCC-CCCCCCcccC-cCc-ccCC--CC-ccccccCCccccccCccccccChhhhhccchhcc-c--cCCCCccccc
Confidence 1111111 1111100000 000 0000 00 0011123345678888877888887765432221 1 1222334456
Q ss_pred CCCCcccccCCCC-CCCCccchhHHHHhcCCchhhhhhcccccCceeEEeccchhhhhhhccCCceEEEEEeCCCCCCch
Q 004256 499 EDRGRYIKPMLPK-GPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMALN 577 (765)
Q Consensus 499 ~~~Gr~~r~~~~~-~~~~~id~~~Tlraaap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~~~~~~vv~vvD~SgSM~~~ 577 (765)
..||||+++..+. +...+|||++|||+|||||+.|+.........++++++|+++|+++.+++..++||||+||||.++
T Consensus 344 ~~rGr~~~~~~~~~~~~~~i~~~aTlraAap~q~~r~~~~~~~~~~~~~~~~dl~~k~~~~~~~~~v~fvvD~SGSM~~~ 423 (589)
T TIGR02031 344 NHRGRPLRSRLGKPGSGARVDLVATLRAAAPWQRLRREENPAGTRGLIVEASDIRIKRYRRKSGRLLIFVVDASGSAAVA 423 (589)
T ss_pred CCCcccccccCCCCCCCCcccHHHHHHHhCcccccccccCCCcccceEeecccceEEeeccccCceEEEEEECCCCCChH
Confidence 7999999998876 445689999999999999999986433223369999999999999999999999999999999989
Q ss_pred hHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCChhHHHHHHHHHHHHhhhccCC
Q 004256 578 RMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLSMAVRVGLNAEKSGD 657 (765)
Q Consensus 578 rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~gG~T~l~~aL~~A~~~l~~~~~~~~ 657 (765)
||..+|+++..|+.++|.++|+|+||+|++..+.+++|+|++...+.+.|+.+++||+|||+.||..|++.+.+....
T Consensus 424 rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gGgTpL~~gL~~A~~~~~~~~~~-- 501 (589)
T TIGR02031 424 RMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAEVLLPPSRSVEQAKRRLDVLPGGGGTPLAAGLAAAFQTALQARSS-- 501 (589)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEEECCCCceEECCCCCCHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHhccc--
Confidence 999999999999999999999999999998767889999999999999999999999999999999999998765433
Q ss_pred CCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcC
Q 004256 658 VGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQ 737 (765)
Q Consensus 658 ~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~g 737 (765)
..+++|||||||++|+++++..+. ..++++...+++..+++.++..||.+++||++.++++.+++++||+.+|
T Consensus 502 ~~~~~ivllTDG~~nv~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA~~~~ 574 (589)
T TIGR02031 502 GGTPTIVLITDGRGNIPLDGDPES-------IKADREQAAEEALALARKIREAGMPALVIDTAMRFVSTGFAQKLARKMG 574 (589)
T ss_pred CCceEEEEECCCCCCCCCCccccc-------ccccchhHHHHHHHHHHHHHhcCCeEEEEeCCCCCccchHHHHHHHhcC
Confidence 336789999999999987632110 1234556778889999999999999999999998878889999999999
Q ss_pred CeEEEcCCCChHHH
Q 004256 738 GKYYYLPNASDAVI 751 (765)
Q Consensus 738 G~y~~~~~~~~~~l 751 (765)
|+||++++++++.|
T Consensus 575 g~y~~l~~~~a~~~ 588 (589)
T TIGR02031 575 AHYIYLPNATAASI 588 (589)
T ss_pred CcEEeCCCCChhhc
Confidence 99999999998765
No 4
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-61 Score=515.22 Aligned_cols=321 Identities=42% Similarity=0.694 Sum_probs=308.9
Q ss_pred CCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccc
Q 004256 90 QFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (765)
..|||.+++||++++.+|.+++++|..+++||.|++||||||++|+|+.+||.+.++.+|+|||+|++|.+||+.|..+.
T Consensus 12 ~~~pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~ 91 (423)
T COG1239 12 ENLPFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKG 91 (423)
T ss_pred hccchhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhc
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHH
Q 004256 170 EYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (765)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~ 249 (765)
. ..+.+....+..+|+.+|.++++++|+|++|+++.+..|...++||+|++||+|||||||+|+|++++|+.||++++
T Consensus 92 ~--e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aa 169 (423)
T COG1239 92 D--ELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAA 169 (423)
T ss_pred c--ccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHH
Confidence 2 22556666788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccC
Q 004256 250 EGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEET 329 (765)
Q Consensus 250 ~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~ 329 (765)
+|++.|+|+|.+..||++|+|||||||++|+|+++|+|||++.|.+..|.+.+.|.+|+.+..+|...|..|..+|....
T Consensus 170 eG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~ 249 (423)
T COG1239 170 EGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQ 249 (423)
T ss_pred hCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCcCC
Q 004256 330 DLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSII 409 (765)
Q Consensus 330 ~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~hR~~~ 409 (765)
..++.++..++.|+..|.+++.+..++++.|.+.++.++|+.+.+.++++++|+|.|+.+|+.+|+++|+.++++||.+.
T Consensus 250 ~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~l~hR~~~ 329 (423)
T COG1239 250 RALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKALAALRGRTEVEEEDIREAAELALLHRRRR 329 (423)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHhcCceeeehhhHHHHHhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCC
Q 004256 410 NET 412 (765)
Q Consensus 410 ~~~ 412 (765)
.+.
T Consensus 330 ~~~ 332 (423)
T COG1239 330 KPF 332 (423)
T ss_pred ccc
Confidence 654
No 5
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=100.00 E-value=1.2e-53 Score=458.32 Aligned_cols=319 Identities=38% Similarity=0.609 Sum_probs=291.6
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (765)
...|||++||||+.+|++|++++++|..++|||.|++|||||++||.++++++...++++|+|||+|++|++||+.|+..
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~ 90 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREA 90 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred ccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHH
Q 004256 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (765)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l 248 (765)
...+ ..........||+.+|.++++++|||++|+++++.+|...+++|+|.+|++|||||||||+|++.+|..|+++|
T Consensus 91 ~~~~--~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam 168 (350)
T CHL00081 91 IQNG--ETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSA 168 (350)
T ss_pred hccc--ccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHH
Confidence 5211 11122335789999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcccccc
Q 004256 249 TEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEE 328 (765)
Q Consensus 249 ~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~ 328 (765)
+++.++++|.|.+..+|++|++|+|+||+++.|+++|+|||++++.+..|...+.+.+|+.....|...+..+...|...
T Consensus 169 ~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~ 248 (350)
T CHL00081 169 ASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEES 248 (350)
T ss_pred HhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999988778999999988766655555555555444
Q ss_pred CcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCcC
Q 004256 329 TDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSI 408 (765)
Q Consensus 329 ~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~hR~~ 408 (765)
.......++.++++...|.++++++++++++|...++.|+|+.+.++++|+++|+|+||++|+++||+.++.+||.||++
T Consensus 249 ~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~HR~~ 328 (350)
T CHL00081 249 QEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLRHRLR 328 (350)
T ss_pred cccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhCc
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 004256 409 I 409 (765)
Q Consensus 409 ~ 409 (765)
.
T Consensus 329 ~ 329 (350)
T CHL00081 329 K 329 (350)
T ss_pred C
Confidence 3
No 6
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=100.00 E-value=7e-50 Score=429.98 Aligned_cols=316 Identities=38% Similarity=0.615 Sum_probs=284.1
Q ss_pred CCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccc
Q 004256 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (765)
|||+.|+||+.+|++|++++++|..++|+|.|++||||||++|+|+.+++....+.+|+++|+|.+|..||+.|+.+...
T Consensus 1 ~pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 80 (337)
T TIGR02030 1 FPFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDS 80 (337)
T ss_pred CCccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999875321
Q ss_pred cccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcC
Q 004256 172 DTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG 251 (765)
Q Consensus 172 ~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~ 251 (765)
. ..........||+.+|.++++++|+|++|+++.+.+|...+++|+|.+|++|+|||||||+|++.+|+.|+++|+++
T Consensus 81 ~--~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g 158 (337)
T TIGR02030 81 Q--EPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASG 158 (337)
T ss_pred c--cccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhC
Confidence 0 01112224679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcH
Q 004256 252 VNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDL 331 (765)
Q Consensus 252 ~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~ 331 (765)
.++++|.|.+..+|++|++|+|+||+++.|+++|+|||++.+.+..|...+++.+|+.....+..++..+...+......
T Consensus 159 ~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~ 238 (337)
T TIGR02030 159 WNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEA 238 (337)
T ss_pred CeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhc
Confidence 98999999999999999999999999999999999999999989877777888899887655543444443334444456
Q ss_pred HHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCcCC
Q 004256 332 AKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSII 409 (765)
Q Consensus 332 ~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~hR~~~ 409 (765)
....+..++++...|.++++++++++++|...++.|+|+.+.++++|+++|+++||++|+++||+.++.+||.||++.
T Consensus 239 ~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~HR~~~ 316 (337)
T TIGR02030 239 LQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALRHRLRK 316 (337)
T ss_pred CHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhCcC
Confidence 678899999999999999999999999999999999999999999999999999999999999999999999999973
No 7
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=100.00 E-value=9.6e-46 Score=396.98 Aligned_cols=311 Identities=36% Similarity=0.577 Sum_probs=272.7
Q ss_pred CCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccc
Q 004256 90 QFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (765)
.+++|++|+||+.++++|+++++++..+||||.|+||||||++||+++.++|.+..+++|+|+|.+- .+|..+....
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~---~~~~~~~~~~ 79 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP---EDCPEWAHVS 79 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc---cCCccccccc
Confidence 5789999999999999999998888889999999999999999999999999999999999999842 2222111100
Q ss_pred cccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHH
Q 004256 170 EYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (765)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~ 249 (765)
. . .......||+.+|.++++++|+|++|+++.+.+|...+++|+|.+||+|+|||||||++++.+|+.|+++|+
T Consensus 80 ~---~---~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~me 153 (334)
T PRK13407 80 S---T---TMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQ 153 (334)
T ss_pred C---C---cccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHH
Confidence 0 0 011135799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccC
Q 004256 250 EGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEET 329 (765)
Q Consensus 250 ~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~ 329 (765)
++.++++++|.+..+|++|++|+|+||.++.++++|+|||++.+.+..|...+++.+|+.....+..++..+...+....
T Consensus 154 e~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~ 233 (334)
T PRK13407 154 SGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAED 233 (334)
T ss_pred cCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccc
Confidence 99999999999999999999999999999999999999999999998777778889998876555434444444444444
Q ss_pred cHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCcCC
Q 004256 330 DLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSII 409 (765)
Q Consensus 330 ~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~hR~~~ 409 (765)
......+..++.....|.++++++++++++|...++.|+|+.+.+++.|+++|+++||++|+++||+.++.++|.||++.
T Consensus 234 ~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl~hR~~~ 313 (334)
T PRK13407 234 MQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVATMALSHRLRR 313 (334)
T ss_pred cCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHHhhhhhccC
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999973
No 8
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-46 Score=409.68 Aligned_cols=280 Identities=24% Similarity=0.287 Sum_probs=251.8
Q ss_pred cccccchhHHHHHHhcCCCcccccCCCCccccCCCCccHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCcee
Q 004256 19 LSHLQQSCSVVSSLKLHPLLFSYSPPPFFKFRTRPKHHRFFHVRASSSNATLDSANGAVAAASEDQDSYGRQFFPLAAVV 98 (765)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~~~d~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~iv 98 (765)
++.-...++||+|||.| ||||++|||...+ +...++++++.+++..++..... .....+..+|
T Consensus 82 ~Tg~g~i~~AV~A~k~G--A~Dfl~KP~~~~~------L~~~v~ral~~~~~~~e~~~~~~---------~~~~~~~~li 144 (464)
T COG2204 82 MTGHGDIDTAVEALRLG--AFDFLEKPFDLDR------LLAIVERALELRELQRENRRSLK---------RAKSLGGELV 144 (464)
T ss_pred EeCCCCHHHHHHHHhcC--cceeeeCCCCHHH------HHHHHHHHHHHhhhhhhhhhhhh---------ccccccCCce
Confidence 33445678999999999 9999999998665 89999999999988887764111 1112346799
Q ss_pred echHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCc
Q 004256 99 GQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGN 176 (765)
Q Consensus 99 G~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (765)
|+|+.|+.+ ++..++++..+|||+||+||||.++||+||+.++|
T Consensus 145 G~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R---------------------------------- 190 (464)
T COG2204 145 GESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPR---------------------------------- 190 (464)
T ss_pred ecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcc----------------------------------
Confidence 999999999 78899999999999999999999999999999997
Q ss_pred ccccccCCCeEeCCCC-----CcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcC
Q 004256 177 LKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG 251 (765)
Q Consensus 177 ~~~~~~~~~~v~l~~~-----~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~ 251 (765)
.+.|||.++|+ +.|++|||+ |++.|+|+...+.|.|+.|+|||||||||..||.++|.+||++|+++
T Consensus 191 -----~~~PFVavNcaAip~~l~ESELFGh---ekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~ 262 (464)
T COG2204 191 -----AKGPFIAVNCAAIPENLLESELFGH---EKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQER 262 (464)
T ss_pred -----cCCCceeeecccCCHHHHHHHhhcc---cccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcC
Confidence 67899997776 556689998 69999999999999999999999999999999999999999999999
Q ss_pred ceEEEeCCeeEEeeCceEEEEeecC------CCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccc
Q 004256 252 VNIVEREGISFKHPCKPLLIATYNP------EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (765)
Q Consensus 252 ~~~v~r~G~~~~~p~~~~lIat~N~------~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~ 325 (765)
. ++|.|++...+.+++||++||. ..|.|+++|||||+++ .|.+||+++|++||+.++.+|+...+..++..
T Consensus 263 ~--~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~-~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~ 339 (464)
T COG2204 263 E--FERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVV-PLRLPPLRERKEDIPLLAEHFLKRFAAELGRP 339 (464)
T ss_pred e--eEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccc-eecCCcccccchhHHHHHHHHHHHHHHHcCCC
Confidence 9 9999999999999999999998 3699999999999997 89999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHH
Q 004256 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEA 360 (765)
Q Consensus 326 ~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a 360 (765)
...+++.+...+.+|.|||||+...+++++++-+|
T Consensus 340 ~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 340 PKGFSPEALAALLAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred CCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988888775443
No 9
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=100.00 E-value=1.4e-39 Score=325.04 Aligned_cols=240 Identities=49% Similarity=0.746 Sum_probs=217.3
Q ss_pred cCCCCCcccccccCCCCcccccCCCCCCCCccchhHHHHhcCCchhhhhhcccccCceeEEeccchhhhhhhccCCceEE
Q 004256 486 RGKAGRAKNVIFSEDRGRYIKPMLPKGPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVI 565 (765)
Q Consensus 486 ~~~~g~~~~~~~~~~~Gr~~r~~~~~~~~~~id~~~Tlraaap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~~~~~~vv 565 (765)
.+.+|+++..... .+|+|++ ..|.++..+|+|++|||+++. ....++++|++.+.++.+.+..|+
T Consensus 18 ~~~~G~~s~~~~~-~rG~~~~-~~~~~~~~~i~~~aTLraA~~-------------g~~~i~p~Dlr~~~r~~r~g~lvv 82 (261)
T COG1240 18 TGTSGRRSAARSG-RRGRYVR-ALPNGPAHRLAVDATLRAAAA-------------GPVAIEPEDLREKIREGRAGNLIV 82 (261)
T ss_pred cCCCCCccccccc-ccccccc-ccCCCCcchhhhhhhHHHhhC-------------CCCccCHHHHHHHHhccCcCCcEE
Confidence 3456665544444 8999999 467777889999999999971 246789999999999999999999
Q ss_pred EEEeCCCCCCc-hhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCChhHHHHHH
Q 004256 566 FVVDASGSMAL-NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLSM 644 (765)
Q Consensus 566 ~vvD~SgSM~~-~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~gG~T~l~~aL~~ 644 (765)
||||+||||.. .||..||+++..||.++|+.+|+|+||+|+|+.+++++|+|++.+.+.++|..|++||+|||++||..
T Consensus 83 fvVDASgSM~~~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A~lll~pT~sv~~~~~~L~~l~~GG~TPL~~aL~~ 162 (261)
T COG1240 83 FVVDASGSMAARRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKAELLLPPTSSVELAERALERLPTGGKTPLADALRQ 162 (261)
T ss_pred EEEeCcccchhHHHHHHHHHHHHHHHHHHHHccceEEEEEecCCcceEEeCCcccHHHHHHHHHhCCCCCCCchHHHHHH
Confidence 99999999997 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEEEeCCCCCC
Q 004256 645 AVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLVIDTENKFV 724 (765)
Q Consensus 645 A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~ 724 (765)
|++++.+..++++...+++|+||||++|++... ..+.++..++.+++..|+.+++|+|+.+++
T Consensus 163 a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~-----------------~~~~e~~~~a~~~~~~g~~~lvid~e~~~~ 225 (261)
T COG1240 163 AYEVLAREKRRGPDRRPVMVVITDGRANVPIPL-----------------GPKAETLEAASKLRLRGIQLLVIDTEGSEV 225 (261)
T ss_pred HHHHHHHhhccCCCcceEEEEEeCCccCCCCCC-----------------chHHHHHHHHHHHhhcCCcEEEEecCCccc
Confidence 999999988888778999999999999986542 145788999999999999999999999888
Q ss_pred CHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHH
Q 004256 725 STGFAKEIARVAQGKYYYLPNASDAVISATTKD 757 (765)
Q Consensus 725 ~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~ 757 (765)
..++.++||...||.||+++++.++.|..+++.
T Consensus 226 ~~g~~~~iA~~~Gg~~~~L~~l~~~~i~~~~r~ 258 (261)
T COG1240 226 RLGLAEEIARASGGEYYHLDDLSDDSIVSAVRQ 258 (261)
T ss_pred cccHHHHHHHHhCCeEEecccccchHHHHHHHh
Confidence 899999999999999999999999999998875
No 10
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-40 Score=361.26 Aligned_cols=226 Identities=25% Similarity=0.357 Sum_probs=210.6
Q ss_pred CCCCCCCceeechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (765)
...|.|++|+|.++.++.+ ++..+++++.+|||.||+||||+.+|++||+.++|
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R------------------------ 294 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPR------------------------ 294 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcc------------------------
Confidence 3568999999999988776 56678889999999999999999999999999998
Q ss_pred ccccccccCcccccccCCCeEeCCCC-----CcccceeeecccccccccCCCcc-cCCceeeccCCeEeccccccCCHHH
Q 004256 167 EKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVF-QPGLLAEAHRGVLYIDEINLLDEGI 240 (765)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~l~~~-----~~e~~L~G~~d~e~~~~~g~~~~-~~Gll~~A~~GiL~lDEi~~L~~~~ 240 (765)
++.|||.++|+ +.|++|||+ ++++|+|+... ++|+|+.||||+||||||+.||.++
T Consensus 295 ---------------~~~PFIaiNCaAiPe~LlESELFGy---e~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~L 356 (560)
T COG3829 295 ---------------ANGPFIAINCAAIPETLLESELFGY---EKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPL 356 (560)
T ss_pred ---------------cCCCeEEEecccCCHHHHHHHHhCc---CCccccccccCCCCcceeeccCCeEEehhhccCCHHH
Confidence 68999997666 567799998 69999999875 9999999999999999999999999
Q ss_pred HHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC------CCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHH
Q 004256 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP------EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (765)
Q Consensus 241 q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~------~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~ 314 (765)
|.+||++|+++. |.|.|++...|.|+++|||||. ++|.||++||||+++. .|.+||+|+|.+||+.++.+|
T Consensus 357 QaKLLRVLQEke--i~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~-~i~iPPLReR~eDI~~L~~~F 433 (560)
T COG3829 357 QAKLLRVLQEKE--IERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVI-PITIPPLRERKEDIPLLAEYF 433 (560)
T ss_pred HHHHHHHHhhce--EEecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeecee-eecCCCcccCcchHHHHHHHH
Confidence 999999999999 9999999999999999999997 4799999999999997 899999999999999999999
Q ss_pred HHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHH
Q 004256 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVME 359 (765)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~ 359 (765)
+..++..+++....+++.+...+..|.|||||+..++++++++.+
T Consensus 434 l~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~~ 478 (560)
T COG3829 434 LDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVNL 478 (560)
T ss_pred HHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999988653
No 11
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-40 Score=353.07 Aligned_cols=225 Identities=24% Similarity=0.337 Sum_probs=209.9
Q ss_pred CCCCCceeechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccc
Q 004256 91 FFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (765)
...+..|||+|++|+.+ .+..+++++.+|||.||+||||+.+||+||++++|
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R-------------------------- 272 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPR-------------------------- 272 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcc--------------------------
Confidence 45677899999999988 68889999999999999999999999999999998
Q ss_pred ccccccCcccccccCCCeEeCCCC-----CcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 169 AEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~l~~~-----~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
+..|||.++|. +.|++|||+ +|++|+|+...++|.|+.||||+||||||..||..+|.+
T Consensus 273 -------------~~kPfV~~NCAAlPesLlESELFGH---eKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaK 336 (550)
T COG3604 273 -------------RDKPFVKLNCAALPESLLESELFGH---EKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAK 336 (550)
T ss_pred -------------cCCCceeeeccccchHHHHHHHhcc---cccccccchhccCcceeecCCCeEechhhccCCHHHHHH
Confidence 67888885554 677899999 599999999999999999999999999999999999999
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHh
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER 317 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~ 317 (765)
||++|++|+ |+|.|+...++.+++|||+||.+ +|+||++||||++++ .+.+||+++|.+||+.++.+|.++
T Consensus 337 LLRvLQegE--ieRvG~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~-Pl~lPPLRER~~DIplLA~~Fle~ 413 (550)
T COG3604 337 LLRVLQEGE--IERVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVF-PLELPPLRERPEDIPLLAGYFLEK 413 (550)
T ss_pred HHHHHhhcc--eeecCCCceeEEEEEEEeccchhHHHHHHcCcchhhhhhccccc-ccCCCCcccCCccHHHHHHHHHHH
Confidence 999999999 99999999999999999999984 699999999999997 899999999999999999999999
Q ss_pred hHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHH
Q 004256 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEA 360 (765)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a 360 (765)
.+.++++....+++.+...+..|.|||||+..+++++..+-++
T Consensus 414 ~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 414 FRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999888888776554
No 12
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.97 E-value=4.2e-31 Score=300.03 Aligned_cols=276 Identities=25% Similarity=0.258 Sum_probs=230.2
Q ss_pred ccchhHHHHHHhcCCCcccccCCCCccccCCCCccHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCceeech
Q 004256 22 LQQSCSVVSSLKLHPLLFSYSPPPFFKFRTRPKHHRFFHVRASSSNATLDSANGAVAAASEDQDSYGRQFFPLAAVVGQD 101 (765)
Q Consensus 22 ~~~~~~~~~~~~~g~~~~d~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ivG~~ 101 (765)
-.....++++++.| ++||+.|||.... +...+++++....+..++..+..... ...|..++|.+
T Consensus 82 ~~~~~~~~~a~~~G--a~dyl~KP~~~~~------L~~~i~~~~~~~~l~~~~~~l~~~~~--------~~~~~~lig~s 145 (445)
T TIGR02915 82 NDDRENAVKAIGLG--AYDFYQKPIDPDV------LKLIVDRAFHLYTLETENRRLQSALG--------GTALRGLITSS 145 (445)
T ss_pred CCCHHHHHHHHHCC--ccEEEeCCCCHHH------HHHHHhhhhhhhhhHHHHHHhhhhhh--------cccccceeecC
Confidence 34567899999999 9999999987544 66777777665554444433322211 12345799999
Q ss_pred HHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccc
Q 004256 102 AIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKT 179 (765)
Q Consensus 102 ~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (765)
+.++.+ .+..++....+|+|.||+||||+++|+++|..+++
T Consensus 146 ~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~------------------------------------- 188 (445)
T TIGR02915 146 PGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR------------------------------------- 188 (445)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc-------------------------------------
Confidence 988877 45566777899999999999999999999998875
Q ss_pred cccCCCeEeCCCCCc-----ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceE
Q 004256 180 QIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNI 254 (765)
Q Consensus 180 ~~~~~~~v~l~~~~~-----e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~ 254 (765)
...||+.++|... +..|||+ +++.++|.....+|++..|+|||||||||+.|+..+|..|+++++++.
T Consensus 189 --~~~~~v~v~c~~~~~~~~~~~lfg~---~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~-- 261 (445)
T TIGR02915 189 --KDKRFVAINCAAIPENLLESELFGY---EKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERV-- 261 (445)
T ss_pred --CCCCeEEEECCCCChHHHHHHhcCC---CCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCe--
Confidence 4678888887765 4567886 477788877778999999999999999999999999999999999998
Q ss_pred EEeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcccccc
Q 004256 255 VEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEE 328 (765)
Q Consensus 255 v~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~ 328 (765)
+.+.|....++.++++|++++.+ +|.|+++||+||+.. .|.+||+++|++||..++.+|+...+..+++....
T Consensus 262 ~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~-~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~ 340 (445)
T TIGR02915 262 IERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEI-SITIPPLRSRDGDAVLLANAFLERFARELKRKTKG 340 (445)
T ss_pred EEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccc-eecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCC
Confidence 78888888899999999999974 589999999999986 69999999999999999999999988887777788
Q ss_pred CcHHHHHHHHHhcccCCccCCHHHHHHHHH
Q 004256 329 TDLAKTQIILAREYLKDVAIGREQLKYLVM 358 (765)
Q Consensus 329 ~~~~~~~il~a~~~~~nv~i~~~~l~~l~~ 358 (765)
+++.+...+..|.||+||+...++++.++.
T Consensus 341 ~~~~a~~~L~~~~wpgNvreL~~~i~~a~~ 370 (445)
T TIGR02915 341 FTDDALRALEAHAWPGNVRELENKVKRAVI 370 (445)
T ss_pred CCHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 999999999999999999988888776653
No 13
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.97 E-value=2.5e-31 Score=301.76 Aligned_cols=274 Identities=22% Similarity=0.267 Sum_probs=217.2
Q ss_pred chhHHHHHHhcCCCcccccCCCCccccCCCCccHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCceeechHH
Q 004256 24 QSCSVVSSLKLHPLLFSYSPPPFFKFRTRPKHHRFFHVRASSSNATLDSANGAVAAASEDQDSYGRQFFPLAAVVGQDAI 103 (765)
Q Consensus 24 ~~~~~~~~~~~g~~~~d~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ivG~~~~ 103 (765)
..+.|+++.+.| +++|.. ..+...+++|++...+..++...-. ..... ...+.|++|+|+++.
T Consensus 165 ~~~~A~~~g~~g--~~~~s~-----------e~i~~a~~~A~~~~~~~~~~~~~~~---~~~~~-~~~~~f~~iiG~S~~ 227 (538)
T PRK15424 165 ITDLAEEAGMTG--IFIYSA-----------ATVRQAFEDALDMTRMTLRHNTHYA---TRNAL-RTRYVLGDLLGQSPQ 227 (538)
T ss_pred HHHHHHHhCCce--EEecCH-----------HHHHHHHHHHHHHHHHHhhhhhccc---hhhhh-ccccchhheeeCCHH
Confidence 467899999999 888832 1256677777766555444332100 00011 123678899999999
Q ss_pred HHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhh--------CCCcchhcccccCCCCCCCCcccccccccccccc
Q 004256 104 KTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAI--------LPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDT 173 (765)
Q Consensus 104 ~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (765)
++.+ .+..++.+..+|||+||+||||+++|++||.. +++
T Consensus 228 m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r------------------------------- 276 (538)
T PRK15424 228 MEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGK------------------------------- 276 (538)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCcc-------------------------------
Confidence 8888 56677888999999999999999999999998 443
Q ss_pred cCcccccccCCCeEeCCCCCc-----ccceeeecccccccccCCCc-ccCCceeeccCCeEeccccccCCHHHHHHHHHH
Q 004256 174 AGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTV-FQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (765)
Q Consensus 174 ~~~~~~~~~~~~~v~l~~~~~-----e~~L~G~~d~e~~~~~g~~~-~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~ 247 (765)
.+.||+.++|... +.+|||+ +++.|+|... .++|+++.|+|||||||||+.||..+|.+|+++
T Consensus 277 --------~~~pfv~inCaal~e~lleseLFG~---~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~ 345 (538)
T PRK15424 277 --------KSHPFVAVNCGAIAESLLEAELFGY---EEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRV 345 (538)
T ss_pred --------CCCCeEEeecccCChhhHHHHhcCC---ccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhh
Confidence 5789999888754 4578997 4788888753 678999999999999999999999999999999
Q ss_pred HHcCceEEEeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHH
Q 004256 248 LTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (765)
Q Consensus 248 l~~~~~~v~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~ 321 (765)
|+++. +.|.|.....+.++++|++||.+ +|.|+++||+||+.. .|.+||+++|++||..++.+|+......
T Consensus 346 L~e~~--~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~-~I~lPPLReR~eDI~~L~~~fl~~~~~~ 422 (538)
T PRK15424 346 LEEKE--VTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSIL-RLQLPPLRERVADILPLAESFLKQSLAA 422 (538)
T ss_pred hhcCe--EEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCC-eecCCChhhchhHHHHHHHHHHHHHHHH
Confidence 99998 88999999999999999999973 588999999999987 7999999999999999999999886554
Q ss_pred hccccc----cCcHHHHHHHHHhcccCCccCCHHHHHHHHHH
Q 004256 322 FKMVEE----ETDLAKTQIILAREYLKDVAIGREQLKYLVME 359 (765)
Q Consensus 322 ~~~~~~----~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~ 359 (765)
++.... .....+...+..|.|||||+...++++.++-+
T Consensus 423 ~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 423 LSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred cCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 333211 11223447899999999999999988887654
No 14
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.97 E-value=1.8e-31 Score=288.76 Aligned_cols=219 Identities=23% Similarity=0.296 Sum_probs=195.3
Q ss_pred eeechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccccccccc
Q 004256 97 VVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTA 174 (765)
Q Consensus 97 ivG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (765)
|||+|+.++.+ .+..++....+|||+||+||||+++|++||..+++
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r-------------------------------- 48 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR-------------------------------- 48 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc--------------------------------
Confidence 58999988887 67777888999999999999999999999999875
Q ss_pred CcccccccCCCeEeCCCCCc-----ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHH
Q 004256 175 GNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (765)
Q Consensus 175 ~~~~~~~~~~~~v~l~~~~~-----e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~ 249 (765)
...||+.++|... +.++||+ +++.++|.....+|++..|+|||||||||+.|+..+|..|+++|+
T Consensus 49 -------~~~pfv~vnc~~~~~~~l~~~lfG~---~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~ 118 (329)
T TIGR02974 49 -------WQGPLVKLNCAALSENLLDSELFGH---EAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIE 118 (329)
T ss_pred -------cCCCeEEEeCCCCChHHHHHHHhcc---ccccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHH
Confidence 4679999888754 4567886 478888888788999999999999999999999999999999999
Q ss_pred cCceEEEeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhc
Q 004256 250 EGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (765)
Q Consensus 250 ~~~~~v~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~ 323 (765)
++. +.+.|.....+.++++|+++|.+ +|.|+++||+||+.. .|.+||+++|++||..++.+|+...+..++
T Consensus 119 ~~~--~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~-~i~lPpLReR~eDI~~L~~~fl~~~~~~~~ 195 (329)
T TIGR02974 119 YGE--FERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFD-VITLPPLRERQEDIMLLAEHFAIRMARELG 195 (329)
T ss_pred cCc--EEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcch-hcCCCchhhhhhhHHHHHHHHHHHHHHHhC
Confidence 998 88899998999999999999974 589999999999886 588899999999999999999999888777
Q ss_pred ccc-ccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHH
Q 004256 324 MVE-EETDLAKTQIILAREYLKDVAIGREQLKYLVMEA 360 (765)
Q Consensus 324 ~~~-~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a 360 (765)
+.. ..+++.+...+..|.|||||+...++++.++..+
T Consensus 196 ~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 196 LPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 776 7899999999999999999999888888776544
No 15
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.97 E-value=8.8e-31 Score=269.64 Aligned_cols=221 Identities=18% Similarity=0.265 Sum_probs=196.6
Q ss_pred CCCCCCceeechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 90 QFFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
...+|+.|++.|..|+.+ +...++..+.|+||.||+||||..+||+.|..+||
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R------------------------- 253 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPR------------------------- 253 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcc-------------------------
Confidence 346899999999988888 56667788999999999999999999999999997
Q ss_pred cccccccCcccccccCCCeEeCCCC-----CcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~-----~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~ 242 (765)
...||+.++|. ..|++|||+-- | ....+|+++.|+||++|||||..|++.+|.
T Consensus 254 --------------~~~pFlalNCA~lPe~~aEsElFG~ap-------g-~~gk~GffE~AngGTVlLDeIgEmSp~lQa 311 (511)
T COG3283 254 --------------HSKPFLALNCASLPEDAAESELFGHAP-------G-DEGKKGFFEQANGGTVLLDEIGEMSPRLQA 311 (511)
T ss_pred --------------cCCCeeEeecCCCchhHhHHHHhcCCC-------C-CCCccchhhhccCCeEEeehhhhcCHHHHH
Confidence 57788886655 55678899621 2 345689999999999999999999999999
Q ss_pred HHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC------CCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHH
Q 004256 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP------EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (765)
Q Consensus 243 ~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~------~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~ 316 (765)
+||+++.+|. +.|.|..+.+-.+++||+||.. +.|+|+++||+|+++. ++.+||++++..||..++.+|..
T Consensus 312 KLLRFL~DGt--FRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVL-tl~~PpLRer~~di~pL~e~Fv~ 388 (511)
T COG3283 312 KLLRFLNDGT--FRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVL-TLNLPPLRERPQDIMPLAELFVQ 388 (511)
T ss_pred HHHHHhcCCc--eeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhhee-eecCCccccCcccchHHHHHHHH
Confidence 9999999999 9999999999999999999986 5799999999999997 89999999999999999999999
Q ss_pred hhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHH
Q 004256 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEA 360 (765)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a 360 (765)
+.+...+...+.+++.....+..|.|||||+...+++=..+.+|
T Consensus 389 q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 389 QFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998877765544443
No 16
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.97 E-value=7.3e-31 Score=283.62 Aligned_cols=228 Identities=25% Similarity=0.299 Sum_probs=200.7
Q ss_pred CCCCceeechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccc
Q 004256 92 FPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (765)
..+.++||.+..++.+ ++.+++|...+|||+||+||||+.+|+.||..+.+.
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~-------------------------- 128 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR-------------------------- 128 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc--------------------------
Confidence 4578899999977776 677789999999999999999999999999877641
Q ss_pred cccccCcccccccCCCeEeCCCC-----CcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHH
Q 004256 170 EYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (765)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~l~~~-----~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~L 244 (765)
.+.|||.++|+ ..+.+|||+ ++++|+|+...++|++++|+||+||||||.+||+..|.+|
T Consensus 129 ------------~~~PFI~~NCa~~~en~~~~eLFG~---~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kL 193 (403)
T COG1221 129 ------------AEAPFIAFNCAAYSENLQEAELFGH---EKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKL 193 (403)
T ss_pred ------------cCCCEEEEEHHHhCcCHHHHHHhcc---ccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHH
Confidence 26789987776 344578998 5999999999999999999999999999999999999999
Q ss_pred HHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC-Ccch--HHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHH
Q 004256 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG-VVRE--HLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (765)
Q Consensus 245 l~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg-~l~~--~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~ 321 (765)
+.+|++|. ++|.|.+...+.+|++|++||.+.. .+.. +|++|+... .|.+|++++|+.||+.++.+|+...+..
T Consensus 194 l~~le~g~--~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~-~I~LPpLrER~~Di~~L~e~Fl~~~~~~ 270 (403)
T COG1221 194 LRVLEEGE--YRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNIL-TITLPPLRERKEDILLLAEHFLKSEARR 270 (403)
T ss_pred HHHHHcCc--eEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCc-eecCCChhhchhhHHHHHHHHHHHHHHH
Confidence 99999999 8999999999999999999996432 3444 899987776 5888999999999999999999999999
Q ss_pred hccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhC
Q 004256 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG 363 (765)
Q Consensus 322 ~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~ 363 (765)
.+.......+.+.+.+.+|.|||||+...++++++|..+...
T Consensus 271 l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 271 LGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQASGE 312 (403)
T ss_pred cCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhccc
Confidence 998888888899999999999999999999988887665444
No 17
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.97 E-value=1.4e-29 Score=289.44 Aligned_cols=274 Identities=22% Similarity=0.321 Sum_probs=225.4
Q ss_pred ccchhHHHHHHhcCCCcccccCCCCccccCCCCccHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCceeech
Q 004256 22 LQQSCSVVSSLKLHPLLFSYSPPPFFKFRTRPKHHRFFHVRASSSNATLDSANGAVAAASEDQDSYGRQFFPLAAVVGQD 101 (765)
Q Consensus 22 ~~~~~~~~~~~~~g~~~~d~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ivG~~ 101 (765)
-.....++++++.| ++||+.||+.... +...+++++.......+.. .. ....+|..++|.+
T Consensus 84 ~~~~~~~~~a~~~G--a~~~l~KP~~~~~------L~~~i~~~l~~~~~~~~~~---~~--------~~~~~~~~lig~s 144 (469)
T PRK10923 84 HSDLDAAVSAYQQG--AFDYLPKPFDIDE------AVALVERAISHYQEQQQPR---NI--------QVNGPTTDIIGEA 144 (469)
T ss_pred CCCHHHHHHHHhcC--cceEEecCCcHHH------HHHHHHHHHHHHHHHHhhh---hh--------hhccccccceecC
Confidence 34567789999999 9999999987443 5666666554332221111 00 0123467899999
Q ss_pred HHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccc
Q 004256 102 AIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKT 179 (765)
Q Consensus 102 ~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (765)
..++.+ .+..+++...+|||.||+||||+++|++||..+++
T Consensus 145 ~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~------------------------------------- 187 (469)
T PRK10923 145 PAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR------------------------------------- 187 (469)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCC-------------------------------------
Confidence 988877 55666778899999999999999999999999875
Q ss_pred cccCCCeEeCCCCCc-----ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceE
Q 004256 180 QIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNI 254 (765)
Q Consensus 180 ~~~~~~~v~l~~~~~-----e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~ 254 (765)
...||+.++|... +..+||+ +++.++|......|.+..++||+||||||+.|+...|..|+++++++.
T Consensus 188 --~~~~~i~i~c~~~~~~~~~~~lfg~---~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~-- 260 (469)
T PRK10923 188 --AKAPFIALNMAAIPKDLIESELFGH---EKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQ-- 260 (469)
T ss_pred --CCCCeEeeeCCCCCHHHHHHHhcCC---CCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCc--
Confidence 4678999888754 4567887 477788887788999999999999999999999999999999999998
Q ss_pred EEeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcccccc
Q 004256 255 VEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEE 328 (765)
Q Consensus 255 v~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~ 328 (765)
+.+.|.....+.++++|+|++.+ .|.|+++||+||+.. .|.+||+++|++||..++.+|+...+..+++....
T Consensus 261 ~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~-~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ 339 (469)
T PRK10923 261 FYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI-RVHLPPLRERREDIPRLARHFLQVAARELGVEAKL 339 (469)
T ss_pred EEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcce-eecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCC
Confidence 77888887888899999999974 688999999999876 68899999999999999999999988877777778
Q ss_pred CcHHHHHHHHHhcccCCccCCHHHHHHHHHH
Q 004256 329 TDLAKTQIILAREYLKDVAIGREQLKYLVME 359 (765)
Q Consensus 329 ~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~ 359 (765)
+++.+...+..|.|||||+...++++.++-.
T Consensus 340 ~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 340 LHPETEAALTRLAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 8999999999999999999888887776533
No 18
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.97 E-value=6e-30 Score=277.29 Aligned_cols=222 Identities=22% Similarity=0.300 Sum_probs=194.5
Q ss_pred CCceeechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccc
Q 004256 94 LAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (765)
Q Consensus 94 f~~ivG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (765)
|..++|.++.++.+ .+..+++...+|||+||+||||+++|++||..+++
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r----------------------------- 55 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR----------------------------- 55 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc-----------------------------
Confidence 45799999988888 67777888999999999999999999999998875
Q ss_pred cccCcccccccCCCeEeCCCCCc-----ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHH
Q 004256 172 DTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (765)
Q Consensus 172 ~~~~~~~~~~~~~~~v~l~~~~~-----e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~ 246 (765)
...||+.++|... +..+||+ +++.++|.....+|++..|+|||||||||+.|+..+|..|+.
T Consensus 56 ----------~~~pfv~v~c~~~~~~~~~~~lfg~---~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~ 122 (326)
T PRK11608 56 ----------WQGPFISLNCAALNENLLDSELFGH---EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLR 122 (326)
T ss_pred ----------cCCCeEEEeCCCCCHHHHHHHHccc---cccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHH
Confidence 4679999998865 3467886 366777776677899999999999999999999999999999
Q ss_pred HHHcCceEEEeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHH
Q 004256 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (765)
Q Consensus 247 ~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~ 320 (765)
+++++. +.+.|.....+.++++|++++.+ +|.|+++||+||+.. .|.+||+++|++||..++.+|+...+.
T Consensus 123 ~l~~~~--~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~-~i~lPpLReR~eDI~~L~~~fl~~~~~ 199 (326)
T PRK11608 123 VIEYGE--LERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFD-VVQLPPLRERQSDIMLMAEHFAIQMCR 199 (326)
T ss_pred HHhcCc--EEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCC-EEECCChhhhhhhHHHHHHHHHHHHHH
Confidence 999998 78888888889999999999974 589999999999876 588899999999999999999988877
Q ss_pred Hhcccc-ccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHH
Q 004256 321 VFKMVE-EETDLAKTQIILAREYLKDVAIGREQLKYLVMEA 360 (765)
Q Consensus 321 ~~~~~~-~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a 360 (765)
.+++.. ..+++.+...+..|.||+||+...++++.++..+
T Consensus 200 ~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 200 ELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 776653 6889999999999999999999888887775443
No 19
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.97 E-value=1.3e-29 Score=288.29 Aligned_cols=221 Identities=27% Similarity=0.359 Sum_probs=192.3
Q ss_pred CCCCCceeechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccc
Q 004256 91 FFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (765)
.+.|++|+|+++.++.+ .+..++....+|||+||+||||+++|++||..+++
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r-------------------------- 261 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGR-------------------------- 261 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCc--------------------------
Confidence 47789999999998888 56677888999999999999999999999999875
Q ss_pred ccccccCcccccccCCCeEeCCCCCc-----ccceeeecccccccccCCCc-ccCCceeeccCCeEeccccccCCHHHHH
Q 004256 169 AEYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTV-FQPGLLAEAHRGVLYIDEINLLDEGISN 242 (765)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~l~~~~~-----e~~L~G~~d~e~~~~~g~~~-~~~Gll~~A~~GiL~lDEi~~L~~~~q~ 242 (765)
...||+.++|... +.+|||+ +++.|+|... ..+|+++.|+|||||||||+.||..+|.
T Consensus 262 -------------~~~pfv~inC~~l~e~lleseLFG~---~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~ 325 (526)
T TIGR02329 262 -------------RDFPFVAINCGAIAESLLEAELFGY---EEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQT 325 (526)
T ss_pred -------------CCCCEEEeccccCChhHHHHHhcCC---cccccccccccccccchhhcCCceEEecChHhCCHHHHH
Confidence 5789999888755 4578997 4788888753 5789999999999999999999999999
Q ss_pred HHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHH
Q 004256 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (765)
Q Consensus 243 ~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~ 316 (765)
.|+++|+++. +.|.|.....+.++++|+++|.+ +|.|+++||+||+.. .|.+||+++|++||..++.+|+.
T Consensus 326 ~Ll~~L~~~~--~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~-~I~lPPLReR~eDI~~L~~~fl~ 402 (526)
T TIGR02329 326 RLLRVLEERE--VVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSIL-RIALPPLRERPGDILPLAAEYLV 402 (526)
T ss_pred HHHHHHhcCc--EEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCc-EEeCCCchhchhHHHHHHHHHHH
Confidence 9999999998 78889988999999999999963 588999999999986 68999999999999999999998
Q ss_pred hhHHHhccccccCcHHHHHH-------HHHhcccCCccCCHHHHHHHHHH
Q 004256 317 RSNEVFKMVEEETDLAKTQI-------ILAREYLKDVAIGREQLKYLVME 359 (765)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~i-------l~a~~~~~nv~i~~~~l~~l~~~ 359 (765)
..+..+. ..+++.+... +..|.|||||+...++++.++-.
T Consensus 403 ~~~~~~~---~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 403 QAAAALR---LPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HHHHHcC---CCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 8765442 2467777777 99999999999988888877544
No 20
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.97 E-value=1.7e-29 Score=289.92 Aligned_cols=224 Identities=23% Similarity=0.292 Sum_probs=200.2
Q ss_pred CCCceeechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccccc
Q 004256 93 PLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (765)
Q Consensus 93 ~f~~ivG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (765)
.+..|+|+++.++.+ .+..+++...+|||+||+||||+++|++||..+++
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r---------------------------- 236 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR---------------------------- 236 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc----------------------------
Confidence 567899999999888 67788889999999999999999999999999875
Q ss_pred ccccCcccccccCCCeEeCCCCCc-----ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHH
Q 004256 171 YDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (765)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~l~~~~~-----e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll 245 (765)
...||+.++|... +.+|||+ +++.++|.....+|.+..|+|||||||||+.|+..+|.+|+
T Consensus 237 -----------~~~p~v~v~c~~~~~~~~e~~lfG~---~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll 302 (509)
T PRK05022 237 -----------ADKPLVYLNCAALPESLAESELFGH---VKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLL 302 (509)
T ss_pred -----------CCCCeEEEEcccCChHHHHHHhcCc---cccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHH
Confidence 4678888887754 4578997 47788888777899999999999999999999999999999
Q ss_pred HHHHcCceEEEeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhH
Q 004256 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (765)
Q Consensus 246 ~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~ 319 (765)
++++++. +.+.|.....+.++++|++||.+ .|.|+++||+||+.. .|.+||+++|++||..++.+|+...+
T Consensus 303 ~~l~~~~--~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~-~i~lPpLreR~eDI~~L~~~fl~~~~ 379 (509)
T PRK05022 303 RVLQYGE--IQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVF-PLSVPPLRERGDDVLLLAGYFLEQNR 379 (509)
T ss_pred HHHhcCC--EeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhccccc-EeeCCCchhchhhHHHHHHHHHHHHH
Confidence 9999998 78889888889999999999973 588999999999987 68999999999999999999999988
Q ss_pred HHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHH
Q 004256 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEAL 361 (765)
Q Consensus 320 ~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~ 361 (765)
..++.....+++.+...+..|.||+||+...++++.++-.|.
T Consensus 380 ~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 380 ARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 888777788999999999999999999999998888765543
No 21
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.96 E-value=4.8e-29 Score=284.16 Aligned_cols=277 Identities=21% Similarity=0.262 Sum_probs=226.5
Q ss_pred cccchhHHHHHHhcCCCcccccCCCCccccCCCCccHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCceeec
Q 004256 21 HLQQSCSVVSSLKLHPLLFSYSPPPFFKFRTRPKHHRFFHVRASSSNATLDSANGAVAAASEDQDSYGRQFFPLAAVVGQ 100 (765)
Q Consensus 21 ~~~~~~~~~~~~~~g~~~~d~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ivG~ 100 (765)
.-.....++++++.| ++||+.||+.... +...+++++....+..+...+...+. ....+..++|.
T Consensus 84 ~~~~~~~~~~a~~~G--a~d~l~KP~~~~~------L~~~i~~~l~~~~l~~~~~~l~~~l~-------~~~~~~~ii~~ 148 (457)
T PRK11361 84 AYAEVETAVEALRCG--AFDYVIKPFDLDE------LNLIVQRALQLQSMKKEIRHLHQALS-------TSWQWGHILTN 148 (457)
T ss_pred CCCCHHHHHHHHHCC--ccEEEecccCHHH------HHHHHhhhccccccchhhhhhhhhhh-------ccccccceecc
Confidence 345677899999999 9999999987543 56666666554444443333332211 11344579999
Q ss_pred hHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCccc
Q 004256 101 DAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLK 178 (765)
Q Consensus 101 ~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (765)
++.+..+ .+..++....+|||.|++||||+++|+++|..+.+
T Consensus 149 S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~------------------------------------ 192 (457)
T PRK11361 149 SPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRR------------------------------------ 192 (457)
T ss_pred cHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCC------------------------------------
Confidence 9988777 56666777899999999999999999999998764
Q ss_pred ccccCCCeEeCCCCCc-----ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCce
Q 004256 179 TQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVN 253 (765)
Q Consensus 179 ~~~~~~~~v~l~~~~~-----e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~ 253 (765)
...||+.++|... +..|||+ +++.++|.....+|++..|++||||||||+.|+..+|..|+.+++++.
T Consensus 193 ---~~~~~~~i~c~~~~~~~~~~~lfg~---~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~- 265 (457)
T PRK11361 193 ---AKGPFIKVNCAALPESLLESELFGH---EKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQERE- 265 (457)
T ss_pred ---CCCCeEEEECCCCCHHHHHHHhcCC---CCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCc-
Confidence 4578888777654 4567887 467778887788999999999999999999999999999999999988
Q ss_pred EEEeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccc
Q 004256 254 IVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (765)
Q Consensus 254 ~v~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~ 327 (765)
+.+.|....++.++++|+++|.+ +|.|+++||+||+.. .|.+||+++|++||..++.+|+...+..+++...
T Consensus 266 -~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~-~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~ 343 (457)
T PRK11361 266 -FERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVI-HLILPPLRDRREDISLLANHFLQKFSSENQRDII 343 (457)
T ss_pred -EEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccc-eecCCChhhchhhHHHHHHHHHHHHHHHcCCCCC
Confidence 77888888889999999999974 589999999999886 6999999999999999999999998877777777
Q ss_pred cCcHHHHHHHHHhcccCCccCCHHHHHHHH
Q 004256 328 ETDLAKTQIILAREYLKDVAIGREQLKYLV 357 (765)
Q Consensus 328 ~~~~~~~~il~a~~~~~nv~i~~~~l~~l~ 357 (765)
.+++.+...+..|.|||||+...++++.++
T Consensus 344 ~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~ 373 (457)
T PRK11361 344 DIDPMAMSLLTAWSWPGNIRELSNVIERAV 373 (457)
T ss_pred CcCHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 899999999999999999988877776654
No 22
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.96 E-value=4.6e-30 Score=254.10 Aligned_cols=176 Identities=33% Similarity=0.483 Sum_probs=116.6
Q ss_pred CCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccccccc
Q 004256 93 PLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYD 172 (765)
Q Consensus 93 ~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (765)
+|++|+||+.+|++|+++++ +.+||||+|+||||||++|++++.++|.++..+.+.+.. + ++
T Consensus 1 Df~dI~GQe~aKrAL~iAAa--G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~---------------i-~s 62 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA--GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSK---------------I-YS 62 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH--CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS-----------------S--T
T ss_pred ChhhhcCcHHHHHHHHHHHc--CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcc---------------c-cc
Confidence 48899999999999999998 468999999999999999999999999876544332221 1 11
Q ss_pred ccC--cccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHc
Q 004256 173 TAG--NLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTE 250 (765)
Q Consensus 173 ~~~--~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~ 250 (765)
..+ .........||+..+.+++...|+|+ ....+||.+.+||+|||||||++.+++.+++.|++.|++
T Consensus 63 ~~~~~~~~~~~~~~Pfr~phhs~s~~~liGg----------g~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~ 132 (206)
T PF01078_consen 63 VAGLGPDEGLIRQRPFRAPHHSASEAALIGG----------GRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLED 132 (206)
T ss_dssp T---S---EEEE---EEEE-TT--HHHHHEE----------GGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHH
T ss_pred cccCCCCCceecCCCcccCCCCcCHHHHhCC----------CcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHC
Confidence 111 12234468899999999999999994 447899999999999999999999999999999999999
Q ss_pred CceEEEeCCeeEEeeCceEEEEeecCCC----------------------CCcchHHHhhhhcceeec
Q 004256 251 GVNIVEREGISFKHPCKPLLIATYNPEE----------------------GVVREHLLDRIAINLSAD 296 (765)
Q Consensus 251 ~~~~v~r~G~~~~~p~~~~lIat~N~~e----------------------g~l~~~L~dRf~~~v~i~ 296 (765)
|.++|+|.|.+..+|++|.+|+||||++ .+++.+|+|||+++|.+.
T Consensus 133 g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~ 200 (206)
T PF01078_consen 133 GEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVP 200 (206)
T ss_dssp SBEEEEETTEEEEEB--EEEEEEE-S------------------------------------------
T ss_pred CeEEEEECCceEEEecccEEEEEecccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999964 247789999999987664
No 23
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.96 E-value=1e-28 Score=285.94 Aligned_cols=224 Identities=24% Similarity=0.320 Sum_probs=196.3
Q ss_pred CCCCCCCceeechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (765)
...+.|..|+|+++.++.+ .+..++....+|||+||+||||+++|++||..+++
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r------------------------ 245 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR------------------------ 245 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC------------------------
Confidence 3457889999999998888 56677788899999999999999999999999875
Q ss_pred ccccccccCcccccccCCCeEeCCCCCc-----ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHH
Q 004256 167 EKAEYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (765)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~-----e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q 241 (765)
...||+.++|... +..|||+ +++.++|.....+|++..|+|||||||||+.|+..+|
T Consensus 246 ---------------~~~pfv~i~c~~~~~~~~~~~lfg~---~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q 307 (534)
T TIGR01817 246 ---------------AKRPFVKVNCAALSETLLESELFGH---EKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQ 307 (534)
T ss_pred ---------------CCCCeEEeecCCCCHHHHHHHHcCC---CCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHH
Confidence 4679999888754 4567886 3677778777789999999999999999999999999
Q ss_pred HHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHH
Q 004256 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (765)
Q Consensus 242 ~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~ 315 (765)
..|+++++++. +.+.|.....+.++++|+++|.+ .+.|+++||+||+.. .|.+|++++|++||..++.+|+
T Consensus 308 ~~Ll~~l~~~~--~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~-~i~lPpLreR~eDi~~L~~~~l 384 (534)
T TIGR01817 308 AKLLRVLQEGE--FERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVV-PIFLPPLRERREDIPLLAEAFL 384 (534)
T ss_pred HHHHHHHhcCc--EEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCC-eeeCCCcccccccHHHHHHHHH
Confidence 99999999998 77888888888999999999873 588999999999987 6888999999999999999999
Q ss_pred HhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHH
Q 004256 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVM 358 (765)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~ 358 (765)
...+..+++. ..+++.+...+..|.|||||+...++++.++.
T Consensus 385 ~~~~~~~~~~-~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~ 426 (534)
T TIGR01817 385 EKFNRENGRP-LTITPSAIRVLMSCKWPGNVRELENCLERTAT 426 (534)
T ss_pred HHHHHHcCCC-CCCCHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 9888777666 68999999999999999999888888776653
No 24
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.96 E-value=8.9e-29 Score=277.82 Aligned_cols=277 Identities=21% Similarity=0.294 Sum_probs=206.7
Q ss_pred CCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccc
Q 004256 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (765)
.+|..++|++.+++++.+++. ...+++|.|++|+|||++++.|+.+++.... ++..+.+ .+ +
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~--~G~~llliG~~GsGKTtLak~L~gllpp~~g-------------~e~le~~--~i-~ 249 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAA--GGHNLLLIGPPGTGKTMLASRINGLLPDLSN-------------EEALESA--AI-L 249 (506)
T ss_pred cCeEEEECcHHHHhhhheecc--CCcEEEEECCCCCcHHHHHHHHhccCCCCCC-------------cEEEecc--hh-h
Confidence 378899999999999876655 5678999999999999999999999985321 1111111 11 1
Q ss_pred cccCcc--cccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHH
Q 004256 172 DTAGNL--KTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (765)
Q Consensus 172 ~~~~~~--~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~ 249 (765)
+..+.. .......||+..|.+.+...|+| |....+||.+..||+||||||||+.+++.+|..|++.|+
T Consensus 250 s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~G----------Gg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE 319 (506)
T PRK09862 250 SLVNAESVQKQWRQRPFRSPHHSASLTAMVG----------GGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIE 319 (506)
T ss_pred hhhccccccCCcCCCCccCCCccchHHHHhC----------CCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHH
Confidence 111111 11114689999999999999998 555688999999999999999999999999999999999
Q ss_pred cCceEEEeCCeeEEeeCceEEEEeecCCC--------------------CCcchHHHhhhhcceeecCCCC---------
Q 004256 250 EGVNIVEREGISFKHPCKPLLIATYNPEE--------------------GVVREHLLDRIAINLSADLPMT--------- 300 (765)
Q Consensus 250 ~~~~~v~r~G~~~~~p~~~~lIat~N~~e--------------------g~l~~~L~dRf~~~v~i~~p~~--------- 300 (765)
++.++|.|.|.+..+|++|++|+||||++ +.++.+|+|||++++.+..++.
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~ 399 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVP 399 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCC
Confidence 99999999999999999999999999975 2477899999999988874421
Q ss_pred HhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Q 004256 301 FEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKC 380 (765)
Q Consensus 301 ~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a 380 (765)
.+...+|.+++....+......+.. ...+........+.++++..+.+.+.+.+.++ |+|+...++|+|++
T Consensus 400 ~ess~~i~~rV~~ar~~q~~r~~~~--------n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~l-S~Ra~~rlLrvART 470 (506)
T PRK09862 400 GESSATVKQRVMAARERQFKRQNKL--------NAWLDSPEIRQFCKLESEDARWLEETLIHLGL-SIRAWQRLLKVART 470 (506)
T ss_pred CCChHHHHHHHhhHHHHHHHHHHHH--------hcccCHHHHHHHhCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 1223344434332221111110000 01111111223467888888888888888888 79999999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHhcCC
Q 004256 381 LAALEGREKVNVDDLKKAVELVILP 405 (765)
Q Consensus 381 ~A~l~gr~~Vt~edv~~A~~lvl~h 405 (765)
+|+|+|+++|+++||.+|+.|.-..
T Consensus 471 iADL~g~~~V~~~hv~eAl~yR~~~ 495 (506)
T PRK09862 471 IADIDQSDIITRQHLQEAVSYRAID 495 (506)
T ss_pred HHHHcCCCCCCHHHHHHHHHhhccc
Confidence 9999999999999999999986433
No 25
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.96 E-value=1.2e-27 Score=273.18 Aligned_cols=276 Identities=22% Similarity=0.299 Sum_probs=222.0
Q ss_pred cccchhHHHHHHhcCCCcccccCCCCccccCCCCccHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCceeec
Q 004256 21 HLQQSCSVVSSLKLHPLLFSYSPPPFFKFRTRPKHHRFFHVRASSSNATLDSANGAVAAASEDQDSYGRQFFPLAAVVGQ 100 (765)
Q Consensus 21 ~~~~~~~~~~~~~~g~~~~d~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ivG~ 100 (765)
.......++++++.| ++||+.||+.... +...+++++......... .... .....+..++|.
T Consensus 78 ~~~~~~~~~~a~~~G--a~~~l~KP~~~~~------L~~~i~~~l~~~~~~~~~---~~~~-------~~~~~~~~lig~ 139 (463)
T TIGR01818 78 AHSDLDTAVAAYQRG--AFEYLPKPFDLDE------AVTLVERALAHAQEQVAL---PADA-------GEAEDSAELIGE 139 (463)
T ss_pred CCCCHHHHHHHHHcC--cceeecCCCCHHH------HHHHHHHHHHHHHHHHhh---hhhh-------hccccccceeec
Confidence 344567789999999 9999999987543 566666655433221111 0000 000123469999
Q ss_pred hHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCccc
Q 004256 101 DAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLK 178 (765)
Q Consensus 101 ~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (765)
++.+..+ .+..+.....+++|.|++||||+++|+++|..+++
T Consensus 140 s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~------------------------------------ 183 (463)
T TIGR01818 140 APAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPR------------------------------------ 183 (463)
T ss_pred CHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCC------------------------------------
Confidence 9988877 45556677889999999999999999999998875
Q ss_pred ccccCCCeEeCCCCCc-----ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCce
Q 004256 179 TQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVN 253 (765)
Q Consensus 179 ~~~~~~~~v~l~~~~~-----e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~ 253 (765)
...||+.++|... ++.+||+ +++.++|......|.+..|+||+||||||+.|+..+|..|+++++++.
T Consensus 184 ---~~~~~~~~~c~~~~~~~~~~~lfg~---~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~- 256 (463)
T TIGR01818 184 ---ANGPFIALNMAAIPKDLIESELFGH---EKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGE- 256 (463)
T ss_pred ---CCCCeEEEeCCCCCHHHHHHHhcCC---CCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCc-
Confidence 4678888887755 4467886 477777877778899999999999999999999999999999999998
Q ss_pred EEEeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccc
Q 004256 254 IVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (765)
Q Consensus 254 ~v~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~ 327 (765)
+.+.|.....+.++++|++++.+ .|.|+++||+||+.. .|.+||+++|++||..++.+|+...+..+++...
T Consensus 257 -~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~-~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~ 334 (463)
T TIGR01818 257 -FYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVI-RIHLPPLRERREDIPRLARHFLALAARELDVEPK 334 (463)
T ss_pred -EEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcc-eecCCCcccchhhHHHHHHHHHHHHHHHhCCCCC
Confidence 77888888888899999999974 578999999999886 6889999999999999999999998877777777
Q ss_pred cCcHHHHHHHHHhcccCCccCCHHHHHHHHHH
Q 004256 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVME 359 (765)
Q Consensus 328 ~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~ 359 (765)
.+++.+...+..|.|||||+...++++.++..
T Consensus 335 ~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~ 366 (463)
T TIGR01818 335 LLDPEALERLKQLRWPGNVRQLENLCRWLTVM 366 (463)
T ss_pred CcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 89999999999999999999888877766533
No 26
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-28 Score=263.20 Aligned_cols=277 Identities=25% Similarity=0.294 Sum_probs=198.3
Q ss_pred CCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccccc
Q 004256 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (765)
..+|.+|+||+.+|++|.+++. +.+++|++||||||||++|+.+..++|++..-+ ..+.. .|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA--GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E-------------~lE~s--~I- 236 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA--GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPE-------------ALEVS--AI- 236 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh--cCCcEEEecCCCCchHHhhhhhcccCCCCChHH-------------HHHHH--HH-
Confidence 3589999999999999999887 678899999999999999999999999754311 00000 11
Q ss_pred ccccCc-cc--ccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHH
Q 004256 171 YDTAGN-LK--TQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (765)
Q Consensus 171 ~~~~~~-~~--~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~ 247 (765)
+...+. .. ......||+..+.+++...|+| |....+||.+..||+|||||||+-++...+++.|.+.
T Consensus 237 ~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvG----------GG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~P 306 (490)
T COG0606 237 HSLAGDLHEGCPLKIHRPFRAPHHSASLAALVG----------GGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREP 306 (490)
T ss_pred hhhcccccccCccceeCCccCCCccchHHHHhC----------CCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCc
Confidence 011111 11 1336789999999999999999 4477899999999999999999999999999999999
Q ss_pred HHcCceEEEeCCeeEEeeCceEEEEeecCCC----------------------CCcchHHHhhhhcceeecCCCCHhh--
Q 004256 248 LTEGVNIVEREGISFKHPCKPLLIATYNPEE----------------------GVVREHLLDRIAINLSADLPMTFED-- 303 (765)
Q Consensus 248 l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e----------------------g~l~~~L~dRf~~~v~i~~p~~~e~-- 303 (765)
|++|++.|.|.+....+|++|.+|++|||+. ++++..|+|||++.+++..+.-.+.
T Consensus 307 LE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~ 386 (490)
T COG0606 307 LENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIR 386 (490)
T ss_pred cccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhc
Confidence 9999999999999999999999999999964 1467899999999987753220110
Q ss_pred -------HHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHH
Q 004256 304 -------RVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAAR 376 (765)
Q Consensus 304 -------r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr 376 (765)
-..+-+++.+-.+....++.+. ..-..+....+. ..+.+..+..+.+-....++++ |.|+.-.+++
T Consensus 387 ~~~~~ess~~v~~rVa~AR~~Q~~R~~~~-~~Na~l~~~~l~-----k~~~L~~~~~~~L~~al~~~~l-S~R~~~rILK 459 (490)
T COG0606 387 QVPTGESSAGVRERVAKAREAQIARAGRI-GINAELSEEALR-----KFCALQREDADLLKAALERLGL-SARAYHRILK 459 (490)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHhhcc-CcchhcCHHHHH-----HhcccCHhHHHHHHHHHHhcch-hHHHHHHHHH
Confidence 1122222211111000000000 000001111111 1234444444444444556677 7899999999
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHh
Q 004256 377 VAKCLAALEGREKVNVDDLKKAVELV 402 (765)
Q Consensus 377 ~A~a~A~l~gr~~Vt~edv~~A~~lv 402 (765)
+|+++|.|+|.+.|...|+.+|+.+.
T Consensus 460 varTiADL~g~~~i~~~hl~eAi~yR 485 (490)
T COG0606 460 VARTIADLEGSEQIERSHLAEAISYR 485 (490)
T ss_pred HHhhhhcccCcchhhHHHHHHHHhhh
Confidence 99999999999999999999999985
No 27
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.96 E-value=9.8e-28 Score=264.26 Aligned_cols=257 Identities=18% Similarity=0.202 Sum_probs=193.4
Q ss_pred ceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccC
Q 004256 96 AVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAG 175 (765)
Q Consensus 96 ~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (765)
.|+|++.+++.+.+++. +.++|||.||||||||++||+||..+.+
T Consensus 21 ~i~gre~vI~lll~aal--ag~hVLL~GpPGTGKT~LAraLa~~~~~--------------------------------- 65 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQN--------------------------------- 65 (498)
T ss_pred hccCcHHHHHHHHHHHc--cCCCEEEECCCChhHHHHHHHHHHHhcc---------------------------------
Confidence 48999999999987776 6799999999999999999999998753
Q ss_pred cccccccCCCeEeCCCC-CcccceeeecccccccccCCC-cccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCce
Q 004256 176 NLKTQIARSPFVQIPLG-VTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVN 253 (765)
Q Consensus 176 ~~~~~~~~~~~v~l~~~-~~e~~L~G~~d~e~~~~~g~~-~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~ 253 (765)
..+|..+.+. .+..++||.+++......|.. ...+|.+..++ +||+|||+++++.+|+.||.+|+++.
T Consensus 66 -------~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~rasp~~QsaLLeam~Er~- 135 (498)
T PRK13531 66 -------ARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDEIWKAGPAILNTLLTAINERR- 135 (498)
T ss_pred -------cCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecccccCCHHHHHHHHHHHHhCe-
Confidence 1244443333 245689997655444335655 36788887777 99999999999999999999999999
Q ss_pred EEEeCCeeEEeeCceEEEEeecC--CCCCcchHHHhhhhcceeecCCCCH--hhHHHHHHHHHHHHHhhHHHhccccccC
Q 004256 254 IVEREGISFKHPCKPLLIATYNP--EEGVVREHLLDRIAINLSADLPMTF--EDRVAAVGIATQFQERSNEVFKMVEEET 329 (765)
Q Consensus 254 ~v~r~G~~~~~p~~~~lIat~N~--~eg~l~~~L~dRf~~~v~i~~p~~~--e~r~dI~~l~~~~~~~~~~~~~~~~~~~ 329 (765)
|.+.|.....|.+|+++|| |+ ++|.++++|||||.+.+.+ |++. +...+|+... .. .. ........
T Consensus 136 -~t~g~~~~~lp~rfiv~AT-N~LPE~g~~leAL~DRFliri~v--p~l~~~~~e~~lL~~~--~~-~~---~~~~~~~~ 205 (498)
T PRK13531 136 -FRNGAHEEKIPMRLLVTAS-NELPEADSSLEALYDRMLIRLWL--DKVQDKANFRSMLTSQ--QD-EN---DNPVPASL 205 (498)
T ss_pred -EecCCeEEeCCCcEEEEEC-CCCcccCCchHHhHhhEEEEEEC--CCCCchHHHHHHHHcc--cc-cc---cCCCcccC
Confidence 5567888889998888887 75 4588999999999555544 5543 3334554421 00 00 00000011
Q ss_pred cHHHHHHHHHhcccCCccCCHHHHHHHHHHHHh---C---CCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhc
Q 004256 330 DLAKTQIILAREYLKDVAIGREQLKYLVMEALR---G---GCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVI 403 (765)
Q Consensus 330 ~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~---~---g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl 403 (765)
.-....+...+.....|.+++.+.++|+.+... . ...|+|+.+.+++++++.|+++||++|+++||. .+..||
T Consensus 206 vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL 284 (498)
T PRK13531 206 QITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCL 284 (498)
T ss_pred CCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHh
Confidence 112234555566678899999999999999753 1 125999999999999999999999999999999 999999
Q ss_pred CCCcC
Q 004256 404 LPRSI 408 (765)
Q Consensus 404 ~hR~~ 408 (765)
+||..
T Consensus 285 ~HRl~ 289 (498)
T PRK13531 285 WHDAQ 289 (498)
T ss_pred ccCHH
Confidence 99963
No 28
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.96 E-value=3.2e-28 Score=279.39 Aligned_cols=224 Identities=16% Similarity=0.228 Sum_probs=193.9
Q ss_pred CCCCCCceeechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 90 QFFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
..+.|+.|+|.++.++.+ .+..++....+|||+||+||||+++|+++|..+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r------------------------- 253 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPR------------------------- 253 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCC-------------------------
Confidence 346799999999988877 45567778899999999999999999999998875
Q ss_pred cccccccCcccccccCCCeEeCCCCCcc-----cceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLGVTE-----DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~~~e-----~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~ 242 (765)
...||+.++|.... .+|||+. .+.++|.....+|+++.|++||||||||+.|++.+|.
T Consensus 254 --------------~~~pfv~inca~~~~~~~e~elFG~~---~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~ 316 (520)
T PRK10820 254 --------------GKKPFLALNCASIPDDVVESELFGHA---PGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQA 316 (520)
T ss_pred --------------CCCCeEEeccccCCHHHHHHHhcCCC---CCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHH
Confidence 46799998887653 3678863 4555565556789999999999999999999999999
Q ss_pred HHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC------CCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHH
Q 004256 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP------EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (765)
Q Consensus 243 ~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~------~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~ 316 (765)
+|+++++++. +.+.|.....+.++++|++++. +.|.|+++||+||+.. .|.+||+++|++||..++.+|+.
T Consensus 317 ~Ll~~l~~~~--~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~-~i~lPpLreR~~Di~~L~~~fl~ 393 (520)
T PRK10820 317 KLLRFLNDGT--FRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVL-TLNLPPLRDRPQDIMPLTELFVA 393 (520)
T ss_pred HHHHHHhcCC--cccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCee-EEeCCCcccChhHHHHHHHHHHH
Confidence 9999999998 7888888888899999999886 3588999999999985 79999999999999999999999
Q ss_pred hhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHH
Q 004256 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVM 358 (765)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~ 358 (765)
..+..++.....+++.+...+..|.||+||+...++++.++.
T Consensus 394 ~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~ 435 (520)
T PRK10820 394 RFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALT 435 (520)
T ss_pred HHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 988888777778999999999999999999888877766643
No 29
>PRK15115 response regulator GlrR; Provisional
Probab=99.95 E-value=8.4e-28 Score=272.95 Aligned_cols=269 Identities=20% Similarity=0.249 Sum_probs=217.7
Q ss_pred cccchhHHHHHHhcCCCcccccCCCCccccCCCCccHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCceeec
Q 004256 21 HLQQSCSVVSSLKLHPLLFSYSPPPFFKFRTRPKHHRFFHVRASSSNATLDSANGAVAAASEDQDSYGRQFFPLAAVVGQ 100 (765)
Q Consensus 21 ~~~~~~~~~~~~~~g~~~~d~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ivG~ 100 (765)
.......++++++.| ++||+.||+.... +...++.++..... .. . ......++|.
T Consensus 85 ~~~~~~~~~~a~~~G--a~~~l~KP~~~~~------L~~~l~~~~~~~~~-------~~----~------~~~~~~lig~ 139 (444)
T PRK15115 85 AHGSIPDAVAATQQG--VFSFLTKPVDRDA------LYKAIDDALEQSAP-------AT----D------ERWREAIVTR 139 (444)
T ss_pred CCCCHHHHHHHHhcC--hhhhccCCCCHHH------HHHHHHHHHHhhhc-------cc----c------cchhhccccc
Confidence 445667899999999 9999999987533 55555554332111 00 0 0111357898
Q ss_pred hHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCccc
Q 004256 101 DAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLK 178 (765)
Q Consensus 101 ~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (765)
++.++.+ .+..++....+|+|.|++||||+++|+++|..+++
T Consensus 140 s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r------------------------------------ 183 (444)
T PRK15115 140 SPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR------------------------------------ 183 (444)
T ss_pred CHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC------------------------------------
Confidence 8876665 44555667788999999999999999999999875
Q ss_pred ccccCCCeEeCCCCCc-----ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCce
Q 004256 179 TQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVN 253 (765)
Q Consensus 179 ~~~~~~~~v~l~~~~~-----e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~ 253 (765)
...||+.++|... +..|||+ +++.++|......|++..+++||||||||+.|+...|..|+.+|+++.
T Consensus 184 ---~~~~f~~i~c~~~~~~~~~~~lfg~---~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~- 256 (444)
T PRK15115 184 ---ASKPFIAINCGALPEQLLESELFGH---ARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERK- 256 (444)
T ss_pred ---CCCCeEEEeCCCCCHHHHHHHhcCC---CcCCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCC-
Confidence 4678888877654 4467886 367778887888999999999999999999999999999999999998
Q ss_pred EEEeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccc
Q 004256 254 IVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (765)
Q Consensus 254 ~v~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~ 327 (765)
+.+.|.+...+.++++|+|++.+ .|.|+++||+||+.. .|.+||+++|++||..++.+|+...+..+++...
T Consensus 257 -~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~-~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~ 334 (444)
T PRK15115 257 -VRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVV-SLKIPALAERTEDIPLLANHLLRQAAERHKPFVR 334 (444)
T ss_pred -EEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhcee-eecCCChHhccccHHHHHHHHHHHHHHHhCCCCC
Confidence 67888888888899999999963 578999999999987 7999999999999999999999988777777777
Q ss_pred cCcHHHHHHHHHhcccCCccCCHHHHHHHHHH
Q 004256 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVME 359 (765)
Q Consensus 328 ~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~ 359 (765)
.+++.+...+..|.|||||+...++++.++.+
T Consensus 335 ~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 335 AFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred CcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 78999999999999999999888887776543
No 30
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.95 E-value=3.4e-27 Score=266.60 Aligned_cols=276 Identities=24% Similarity=0.339 Sum_probs=196.1
Q ss_pred CCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccccc
Q 004256 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (765)
.++|++|+||+.+++++.+++. ...+++|.||+|||||++++.|+.+++.... +..++... +
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa~--~g~~vlliG~pGsGKTtlar~l~~llp~~~~-------------~~~le~~~--i- 249 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAAA--GGHNLLLFGPPGSGKTMLASRLQGILPPLTN-------------EEAIETAR--I- 249 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhcc--CCCEEEEEecCCCCHHHHHHHHhcccCCCCC-------------cEEEeccc--c-
Confidence 4589999999999999977765 5578999999999999999999999885321 11111100 0
Q ss_pred ccccCcc--cccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHH
Q 004256 171 YDTAGNL--KTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (765)
Q Consensus 171 ~~~~~~~--~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l 248 (765)
++..+.. .......||+.+++..+...++| |....+||.+..||+||||||||+.+++.+|+.|+++|
T Consensus 250 ~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~g----------gg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~L 319 (499)
T TIGR00368 250 WSLVGKLIDRKQIKQRPFRSPHHSASKPALVG----------GGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPI 319 (499)
T ss_pred ccchhhhccccccccCCccccccccchhhhhC----------CccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHH
Confidence 0000100 00124689999999999888888 44567899999999999999999999999999999999
Q ss_pred HcCceEEEeCCeeEEeeCceEEEEeecCCC----C------------------CcchHHHhhhhcceeecCCCCHhhH--
Q 004256 249 TEGVNIVEREGISFKHPCKPLLIATYNPEE----G------------------VVREHLLDRIAINLSADLPMTFEDR-- 304 (765)
Q Consensus 249 ~~~~~~v~r~G~~~~~p~~~~lIat~N~~e----g------------------~l~~~L~dRf~~~v~i~~p~~~e~r-- 304 (765)
+++.+.+.|.|....+|++|++|++|||++ + .++.+|+|||++++.+.. ...++.
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~-~~~~~l~~ 398 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPL-LPPEKLLS 398 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcC-CCHHHHhc
Confidence 999999999999999999999999999964 1 478899999999987763 222210
Q ss_pred -------HHHHHHHHHHHHhhHHHhcccc--ccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHH
Q 004256 305 -------VAAVGIATQFQERSNEVFKMVE--EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAA 375 (765)
Q Consensus 305 -------~dI~~l~~~~~~~~~~~~~~~~--~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~ll 375 (765)
.+|-.++..-.......+.... ..-..+....+. .-+.++++..+.+.+.+...+. |.|+...++
T Consensus 399 ~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~-----~~~~l~~~~~~~l~~a~~~~~l-S~R~~~ril 472 (499)
T TIGR00368 399 TGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIE-----QFCKLSAIDANDLEGALNKLGL-SSRATHRIL 472 (499)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHH-----hhcCCCHHHHHHHHHHHHhcCC-CchHHHHHH
Confidence 1111111100000000000000 000000000011 0135677777777777777775 999999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH
Q 004256 376 RVAKCLAALEGREKVNVDDLKKAVEL 401 (765)
Q Consensus 376 r~A~a~A~l~gr~~Vt~edv~~A~~l 401 (765)
|+|+++|+|+|++.|+.+||.+|+.|
T Consensus 473 rvArTiAdL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 473 KVARTIADLKEEKNISREHLAEAIEY 498 (499)
T ss_pred HHHHHHHhhcCCCCCCHHHHHHHHhc
Confidence 99999999999999999999999986
No 31
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.95 E-value=6.6e-27 Score=267.82 Aligned_cols=263 Identities=19% Similarity=0.204 Sum_probs=200.6
Q ss_pred CceeechHHHHHHHHhhhcCC------------CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccc
Q 004256 95 AAVVGQDAIKTALLLGAIDRE------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (765)
Q Consensus 95 ~~ivG~~~~~~aL~l~~~~~~------------~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 162 (765)
..|.|++.+|++++++.+... ..||||+|+||||||++||++|+++++.
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~------------------- 263 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA------------------- 263 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc-------------------
Confidence 369999999999988877432 1279999999999999999999998851
Q ss_pred ccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHH
Q 004256 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (765)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~ 242 (765)
+|+... ..+...|.+.. -+...+|.+..++|.+..|++|+|||||++.+++..|.
T Consensus 264 ----------------------~~~~~~-~~~~~~l~~~~--~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~ 318 (509)
T smart00350 264 ----------------------VYTTGK-GSSAVGLTAAV--TRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDRT 318 (509)
T ss_pred ----------------------eEcCCC-CCCcCCccccc--eEccCcceEEecCccEEecCCCEEEEechhhCCHHHHH
Confidence 121100 00001111110 01123466778899999999999999999999999999
Q ss_pred HHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC------------CcchHHHhhhhcceeecCCCCHhhHHHHHHH
Q 004256 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (765)
Q Consensus 243 ~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg------------~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l 310 (765)
.|+++|+++.+.+.+.|.....|++++||||+||.+| .|+++|++||++++.+..+++.++..+|...
T Consensus 319 ~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~ 398 (509)
T smart00350 319 AIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKH 398 (509)
T ss_pred HHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999877 6889999999997667667888888888887
Q ss_pred HHHHHHhhH--HHh-ccccccCcHHHHHHHHHhc-ccCCccCCHHHHHHHHHHHHhCCC------------CCCChHHHH
Q 004256 311 ATQFQERSN--EVF-KMVEEETDLAKTQIILARE-YLKDVAIGREQLKYLVMEALRGGC------------QGHRAELYA 374 (765)
Q Consensus 311 ~~~~~~~~~--~~~-~~~~~~~~~~~~~il~a~~-~~~nv~i~~~~l~~l~~~a~~~g~------------~s~Ra~i~l 374 (765)
+..+..... ... .......+.+...+..++. ..+ .+++++.++|.+++..... .|+|.++.+
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P--~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sl 476 (509)
T smart00350 399 VVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKP--KLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESI 476 (509)
T ss_pred HHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHH
Confidence 654322110 000 0112334456666666765 333 4899999999988765432 378999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhc
Q 004256 375 ARVAKCLAALEGREKVNVDDLKKAVELVI 403 (765)
Q Consensus 375 lr~A~a~A~l~gr~~Vt~edv~~A~~lvl 403 (765)
+|+|+|+|+++++++|+++|+.+|++++.
T Consensus 477 iRla~A~A~l~~r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 477 IRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 99999999999999999999999999874
No 32
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.95 E-value=1.7e-27 Score=283.20 Aligned_cols=224 Identities=19% Similarity=0.234 Sum_probs=196.8
Q ss_pred CCCCceeechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccc
Q 004256 92 FPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (765)
..|..++|+++.++.+ .+..++....+|||+||+|||||++|++||..+.+
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r--------------------------- 425 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR--------------------------- 425 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC---------------------------
Confidence 5688999999999888 56667788899999999999999999999998875
Q ss_pred cccccCcccccccCCCeEeCCCCCc-----ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHH
Q 004256 170 EYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (765)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~l~~~~~-----e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~L 244 (765)
...||+.++|... +.++||+ +++.++|......|.++.|++||||||||+.||..+|..|
T Consensus 426 ------------~~~~~v~i~c~~~~~~~~~~~lfg~---~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L 490 (686)
T PRK15429 426 ------------NNRRMVKMNCAAMPAGLLESDLFGH---ERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKL 490 (686)
T ss_pred ------------CCCCeEEEecccCChhHhhhhhcCc---ccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHH
Confidence 4678888777643 5578887 3566777666678999999999999999999999999999
Q ss_pred HHHHHcCceEEEeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhh
Q 004256 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (765)
Q Consensus 245 l~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~ 318 (765)
+++|+++. +.+.|.....+.++++|+++|.+ .+.|+++||+||+.. .|.+||+++|++||+.++.+|+...
T Consensus 491 ~~~l~~~~--~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~-~i~lPpLreR~~Di~~L~~~~l~~~ 567 (686)
T PRK15429 491 LRVLQEQE--FERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF-PIHLPPLRERPEDIPLLVKAFTFKI 567 (686)
T ss_pred HHHHHhCC--EEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCee-EEeCCChhhhHhHHHHHHHHHHHHH
Confidence 99999998 88888888888999999999973 578999999999987 6999999999999999999999998
Q ss_pred HHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHH
Q 004256 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEA 360 (765)
Q Consensus 319 ~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a 360 (765)
+..+++....+++.+...+..|.|||||+...++++.++-.+
T Consensus 568 ~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 568 ARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 888888777899999999999999999999888888776443
No 33
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.95 E-value=2.8e-27 Score=263.31 Aligned_cols=216 Identities=25% Similarity=0.250 Sum_probs=187.6
Q ss_pred eechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccC
Q 004256 98 VGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAG 175 (765)
Q Consensus 98 vG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (765)
++.+....++ .+..+.....+|||.||+||||..++|+||+.+.
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~---------------------------------- 361 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSE---------------------------------- 361 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhccc----------------------------------
Confidence 4667666666 5677777899999999999999999999999876
Q ss_pred cccccccCCCeEeCCCC-----CcccceeeecccccccccCCCc-ccCCceeeccCCeEeccccccCCHHHHHHHHHHHH
Q 004256 176 NLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTV-FQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (765)
Q Consensus 176 ~~~~~~~~~~~v~l~~~-----~~e~~L~G~~d~e~~~~~g~~~-~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~ 249 (765)
..+|||.++|. +.+++|||+. .+.|+|... ...|++.+|+||+||||||..||..+|..||++|+
T Consensus 362 ------~~gpfvAvNCaAip~~liesELFGy~---~GafTga~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~ 432 (606)
T COG3284 362 ------AAGPFVAVNCAAIPEALIESELFGYV---AGAFTGARRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQ 432 (606)
T ss_pred ------ccCCeEEEEeccchHHhhhHHHhccC---ccccccchhccccccceecCCCccHHHHhhhchHHHHHHHHHHHh
Confidence 36788886665 6678999986 788888763 45799999999999999999999999999999999
Q ss_pred cCceEEEeCCeeEEeeCceEEEEeecC------CCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhc
Q 004256 250 EGVNIVEREGISFKHPCKPLLIATYNP------EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (765)
Q Consensus 250 ~~~~~v~r~G~~~~~p~~~~lIat~N~------~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~ 323 (765)
+|+ |.+.|++. .+.+++||++|+. ++|.|+++||||++.. .|.+|++++|.++|..+...+.+. .
T Consensus 433 e~~--v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~-~i~lP~lr~R~d~~~~l~~~~~~~-----~ 503 (606)
T COG3284 433 EGV--VTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAF-VITLPPLRERSDRIPLLDRILKRE-----N 503 (606)
T ss_pred hCc--eeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCe-eeccCchhcccccHHHHHHHHHHc-----c
Confidence 999 88999999 9999999999997 4799999999999998 599999999999998877665433 2
Q ss_pred cccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCC
Q 004256 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC 365 (765)
Q Consensus 324 ~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~ 365 (765)
.+....+..+...+.+|.||||++..+++++.++-+|....+
T Consensus 504 ~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~ 545 (606)
T COG3284 504 DWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRI 545 (606)
T ss_pred CCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCee
Confidence 377788999999999999999999999999999988866533
No 34
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.95 E-value=1.5e-26 Score=262.35 Aligned_cols=270 Identities=20% Similarity=0.248 Sum_probs=217.7
Q ss_pred cchhHHHHHHhcCCCcccccCCCCccccCCCCccHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCceeechH
Q 004256 23 QQSCSVVSSLKLHPLLFSYSPPPFFKFRTRPKHHRFFHVRASSSNATLDSANGAVAAASEDQDSYGRQFFPLAAVVGQDA 102 (765)
Q Consensus 23 ~~~~~~~~~~~~g~~~~d~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ivG~~~ 102 (765)
.....++++++.| ++||+.||+.... +...+++++........ ..... ......++|.+.
T Consensus 87 ~~~~~~~~a~~~g--a~~~l~Kp~~~~~------L~~~l~~~l~~~~~~~~--~~~~~----------~~~~~~lig~s~ 146 (441)
T PRK10365 87 SSVETAVEALKTG--ALDYLIKPLDFDN------LQATLEKALAHTHSIDA--ETPAV----------TASQFGMVGKSP 146 (441)
T ss_pred CCHHHHHHHHHhh--hHHHhcCCCCHHH------HHHHHHHHHHHHHHHHH--hhhhh----------hccccceEecCH
Confidence 4456889999999 9999999987543 55666655543221111 01000 001124889998
Q ss_pred HHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCccccc
Q 004256 103 IKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQ 180 (765)
Q Consensus 103 ~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (765)
.+..+ .+..+.+...+|+|+|++||||+++|+++|..+++
T Consensus 147 ~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~-------------------------------------- 188 (441)
T PRK10365 147 AMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR-------------------------------------- 188 (441)
T ss_pred HHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCC--------------------------------------
Confidence 77766 45566677889999999999999999999998875
Q ss_pred ccCCCeEeCCCCCc-----ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEE
Q 004256 181 IARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIV 255 (765)
Q Consensus 181 ~~~~~~v~l~~~~~-----e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v 255 (765)
...||+.++|... ++.|||+ +++.++|.....+|++..|+|||||||||+.|++..|..|+++++++. +
T Consensus 189 -~~~~~i~~~c~~~~~~~~~~~lfg~---~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~--~ 262 (441)
T PRK10365 189 -SEKPLVTLNCAALNESLLESELFGH---EKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQERE--V 262 (441)
T ss_pred -CCCCeeeeeCCCCCHHHHHHHhcCC---CCCCcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCc--E
Confidence 4678999888765 3456776 466677777778999999999999999999999999999999999998 7
Q ss_pred EeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccC
Q 004256 256 EREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEET 329 (765)
Q Consensus 256 ~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~ 329 (765)
.+.|.+..++.++++|++|+.+ ++.|+++||+||... .+.+||+++|++||..++.+|+...+..+++....+
T Consensus 263 ~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~-~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~ 341 (441)
T PRK10365 263 QRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV-AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGF 341 (441)
T ss_pred EeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccc-eecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCc
Confidence 8889988899999999999863 578999999999986 789999999999999999999998877777766778
Q ss_pred cHHHHHHHHHhcccCCccCCHHHHHHHH
Q 004256 330 DLAKTQIILAREYLKDVAIGREQLKYLV 357 (765)
Q Consensus 330 ~~~~~~il~a~~~~~nv~i~~~~l~~l~ 357 (765)
++.+...+..|.||+|++...++++.++
T Consensus 342 ~~~a~~~L~~~~wpgN~reL~~~~~~~~ 369 (441)
T PRK10365 342 TPQAMDLLIHYDWPGNIRELENAVERAV 369 (441)
T ss_pred CHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999888777776654
No 35
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.95 E-value=5.7e-27 Score=277.06 Aligned_cols=218 Identities=16% Similarity=0.195 Sum_probs=187.6
Q ss_pred CCCCCceeechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccc
Q 004256 91 FFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (765)
.+.|+.|+|.++.++.+ .+..++....+|||+||+||||+++|++||..+++
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r-------------------------- 374 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER-------------------------- 374 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc--------------------------
Confidence 35688999999988877 56667778899999999999999999999999875
Q ss_pred ccccccCcccccccCCCeEeCCCCCc-----ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 169 AEYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~l~~~~~-----e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
...||+.++|... +++|||+.. .+.....+|+++.|+|||||||||+.||..+|..
T Consensus 375 -------------~~~pfv~vnc~~~~~~~~~~elfg~~~------~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~ 435 (638)
T PRK11388 375 -------------AAGPYIAVNCQLYPDEALAEEFLGSDR------TDSENGRLSKFELAHGGTLFLEKVEYLSPELQSA 435 (638)
T ss_pred -------------cCCCeEEEECCCCChHHHHHHhcCCCC------cCccCCCCCceeECCCCEEEEcChhhCCHHHHHH
Confidence 4679999888765 456888641 1223456899999999999999999999999999
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHh
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER 317 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~ 317 (765)
|+++|+++. +.+.|.....+.++++|+|||.+ ++.|+++||+||+.. .|.+||+++|++||..++.+|+..
T Consensus 436 Ll~~l~~~~--~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~-~i~lPpLreR~~Di~~L~~~~l~~ 512 (638)
T PRK11388 436 LLQVLKTGV--ITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAF-EITIPPLRMRREDIPALVNNKLRS 512 (638)
T ss_pred HHHHHhcCc--EEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhcee-EEeCCChhhhhhHHHHHHHHHHHH
Confidence 999999998 78889888899999999999973 589999999999987 799999999999999999999998
Q ss_pred hHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHH
Q 004256 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLV 357 (765)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~ 357 (765)
.+..+++. ..+++.+...+..|.||+||+...++++.++
T Consensus 513 ~~~~~~~~-~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~ 551 (638)
T PRK11388 513 LEKRFSTR-LKIDDDALARLVSYRWPGNDFELRSVIENLA 551 (638)
T ss_pred HHHHhCCC-CCcCHHHHHHHHcCCCCChHHHHHHHHHHHH
Confidence 87666554 4689999999999999999988877777654
No 36
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=99.93 E-value=2e-24 Score=214.46 Aligned_cols=174 Identities=50% Similarity=0.773 Sum_probs=148.6
Q ss_pred eEEEEEeCCCCCCch-hHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCChhHHH
Q 004256 563 LVIFVVDASGSMALN-RMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHG 641 (765)
Q Consensus 563 ~vv~vvD~SgSM~~~-rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~gG~T~l~~a 641 (765)
.++||||+||||.+. |+..+|.++..++.+.+.++|+|+||+|++..+.+++|++.+...+...|+.++++|+|++..|
T Consensus 2 ~v~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~~~~~~t~~~~~~~~~l~~l~~~G~T~l~~a 81 (178)
T cd01451 2 LVIFVVDASGSMAARHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAEVLLPPTRSVELAKRRLARLPTGGGTPLAAG 81 (178)
T ss_pred eEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEeCCCCCHHHHHHHHHhCCCCCCCcHHHH
Confidence 588999999999874 9999999999999888889999999999876578889999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHH-HHHHHHHHhCCCEEEEEeCC
Q 004256 642 LSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEI-LEVAGKIYKAGMSLLVIDTE 720 (765)
Q Consensus 642 L~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~gi~~~vig~~ 720 (765)
|..|++.+..... ....+.+|||||||.+|.+.+. .... ..+++++++.||.+++|+++
T Consensus 82 L~~a~~~l~~~~~-~~~~~~~ivliTDG~~~~g~~~-------------------~~~~~~~~~~~l~~~gi~v~~I~~~ 141 (178)
T cd01451 82 LLAAYELAAEQAR-DPGQRPLIVVITDGRANVGPDP-------------------TADRALAAARKLRARGISALVIDTE 141 (178)
T ss_pred HHHHHHHHHHHhc-CCCCceEEEEECCCCCCCCCCc-------------------hhHHHHHHHHHHHhcCCcEEEEeCC
Confidence 9999999832211 1122468999999999875321 1233 67788899999999999998
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHH
Q 004256 721 NKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTK 756 (765)
Q Consensus 721 ~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~ 756 (765)
...++.++|++||+.+||+||++++++...|+.+|+
T Consensus 142 ~~~~~~~~l~~iA~~tgG~~~~~~d~~~~~~~~~~~ 177 (178)
T cd01451 142 GRPVRRGLAKDLARALGGQYVRLPDLSADAIASAVR 177 (178)
T ss_pred CCccCccHHHHHHHHcCCeEEEcCcCCHHHHHHHhh
Confidence 766678899999999999999999999999999987
No 37
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.92 E-value=1.9e-25 Score=218.58 Aligned_cols=152 Identities=30% Similarity=0.449 Sum_probs=127.8
Q ss_pred eeechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccccccccc
Q 004256 97 VVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTA 174 (765)
Q Consensus 97 ivG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (765)
|||.++.++.+ ++..++....||||+||+||||+++||+||+.+++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r-------------------------------- 48 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR-------------------------------- 48 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT--------------------------------
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc--------------------------------
Confidence 58999988887 66777888899999999999999999999999886
Q ss_pred CcccccccCCCeEeCCCCCc-----ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHH
Q 004256 175 GNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (765)
Q Consensus 175 ~~~~~~~~~~~~v~l~~~~~-----e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~ 249 (765)
+..||+.++|... +.+|||+ +++.++|....++|+|++|++||||||||+.||+.+|.+|+++|+
T Consensus 49 -------~~~pfi~vnc~~~~~~~~e~~LFG~---~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~ 118 (168)
T PF00158_consen 49 -------KNGPFISVNCAALPEELLESELFGH---EKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLE 118 (168)
T ss_dssp -------TTS-EEEEETTTS-HHHHHHHHHEB---CSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHH
T ss_pred -------ccCCeEEEehhhhhcchhhhhhhcc---ccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHh
Confidence 5789999999754 3468997 367777877778899999999999999999999999999999999
Q ss_pred cCceEEEeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcc
Q 004256 250 EGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAIN 292 (765)
Q Consensus 250 ~~~~~v~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~ 292 (765)
++. +.+.|.....+.+++||++||.+ .|.|+++||+|++..
T Consensus 119 ~~~--~~~~g~~~~~~~~~RiI~st~~~l~~~v~~g~fr~dLy~rL~~~ 165 (168)
T PF00158_consen 119 EGK--FTRLGSDKPVPVDVRIIASTSKDLEELVEQGRFREDLYYRLNVF 165 (168)
T ss_dssp HSE--EECCTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTTE
T ss_pred hch--hccccccccccccceEEeecCcCHHHHHHcCCChHHHHHHhceE
Confidence 998 88989888999999999999973 689999999999876
No 38
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.90 E-value=1.6e-22 Score=236.23 Aligned_cols=264 Identities=17% Similarity=0.198 Sum_probs=191.7
Q ss_pred CceeechHHHHHHHHhhhcCC---------------------CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCC
Q 004256 95 AAVVGQDAIKTALLLGAIDRE---------------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANA 153 (765)
Q Consensus 95 ~~ivG~~~~~~aL~l~~~~~~---------------------~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~ 153 (765)
..|.|++.+|++++++.+... ..||||.|+||||||++||++|+++|+....
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~yt------- 522 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYT------- 522 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccC-------
Confidence 369999999999987776432 1279999999999999999999998862110
Q ss_pred CCCCCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEecccc
Q 004256 154 DPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEI 233 (765)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi 233 (765)
...++..+.+..... .....+|.+..++|.|..|++|||||||+
T Consensus 523 ----------------------------sG~~~s~vgLTa~~~--------~~d~~tG~~~le~GaLvlAdgGtL~IDEi 566 (915)
T PTZ00111 523 ----------------------------SGKSSSSVGLTASIK--------FNESDNGRAMIQPGAVVLANGGVCCIDEL 566 (915)
T ss_pred ----------------------------CCCCCccccccchhh--------hcccccCcccccCCcEEEcCCCeEEecch
Confidence 123444443332210 01122477788899999999999999999
Q ss_pred ccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC------------CcchHHHhhhhcceeecCCCCH
Q 004256 234 NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTF 301 (765)
Q Consensus 234 ~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg------------~l~~~L~dRf~~~v~i~~p~~~ 301 (765)
+.|++..|..|+++|+++.+.|.+.|+....+++++|||++||..| .|++.|++||+++.-+..+++.
T Consensus 567 dkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~ 646 (915)
T PTZ00111 567 DKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQ 646 (915)
T ss_pred hhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCCh
Confidence 9999999999999999999999999999999999999999999544 4779999999987655556666
Q ss_pred hhHHHHHHHHHHH--HHhh----H--HHhc---------------cc--cccCcHHHHHHHHHhcccCCccCCHHHHHHH
Q 004256 302 EDRVAAVGIATQF--QERS----N--EVFK---------------MV--EEETDLAKTQIILAREYLKDVAIGREQLKYL 356 (765)
Q Consensus 302 e~r~dI~~l~~~~--~~~~----~--~~~~---------------~~--~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l 356 (765)
++-..|...+... ..+. . ..+. .. ....+.+...|..++... +-.+++++.+.|
T Consensus 647 ~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~-~P~Ls~eA~~~i 725 (915)
T PTZ00111 647 DTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHC-FPKLSDEAKKVI 725 (915)
T ss_pred HHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccC-CCCCCHHHHHHH
Confidence 6655666544321 0000 0 0000 00 011234555556665421 226888888887
Q ss_pred HHHHHhCC---------------------------------CCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 004256 357 VMEALRGG---------------------------------CQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELV 402 (765)
Q Consensus 357 ~~~a~~~g---------------------------------~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lv 402 (765)
.++...+. -.+.|.+..++|+|.|+|.++-++.|+.+|+++|+.++
T Consensus 726 ~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~ 804 (915)
T PTZ00111 726 TREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIV 804 (915)
T ss_pred HHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHH
Confidence 76432211 13689999999999999999999999999999999986
No 39
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.89 E-value=5.2e-22 Score=228.01 Aligned_cols=245 Identities=24% Similarity=0.234 Sum_probs=179.2
Q ss_pred cCCCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
+.++..|++|+|++..++.|..+.+++...||||+||+|||||++||++|+.+.+... .++
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~---s~~---------------- 118 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPA---SPF---------------- 118 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccC---CCc----------------
Confidence 3567889999999999999977777778899999999999999999999986542000 000
Q ss_pred cccccccCcccccccCCCeEeCCCCC-------cccceeeecccc----ccc--ccCCCcccCCceeeccCCeEeccccc
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLGV-------TEDRLIGSVDVE----ESV--KTGTTVFQPGLLAEAHRGVLYIDEIN 234 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~~-------~e~~L~G~~d~e----~~~--~~g~~~~~~Gll~~A~~GiL~lDEi~ 234 (765)
..+.+|+.++|.. ..+.++|+.+.. .+. .+|....++|++.+|++||||||||+
T Consensus 119 -------------~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~ 185 (531)
T TIGR02902 119 -------------KEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIG 185 (531)
T ss_pred -------------CCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechh
Confidence 0135777777642 233555543110 001 12344567899999999999999999
Q ss_pred cCCHHHHHHHHHHHHcCceEEEe-----CCe----------eEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCC
Q 004256 235 LLDEGISNLLLNVLTEGVNIVER-----EGI----------SFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPM 299 (765)
Q Consensus 235 ~L~~~~q~~Ll~~l~~~~~~v~r-----~G~----------~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~ 299 (765)
.|++..|+.||.+|+++.+.+.. .+. ....|++|++|++|+.....+.++|.+|+..+ .+ ++
T Consensus 186 ~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I-~f--~p 262 (531)
T TIGR02902 186 ELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEI-FF--RP 262 (531)
T ss_pred hCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhhee-eC--CC
Confidence 99999999999999998855431 110 13468899999999888889999999998533 34 44
Q ss_pred CHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Q 004256 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (765)
Q Consensus 300 ~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~ 379 (765)
+. .+||..++..+.. . .++.+++++++.|..+++ +.|.++++++.|.
T Consensus 263 L~--~eei~~Il~~~a~----------------------k----~~i~is~~al~~I~~y~~-----n~Rel~nll~~Aa 309 (531)
T TIGR02902 263 LL--DEEIKEIAKNAAE----------------------K----IGINLEKHALELIVKYAS-----NGREAVNIVQLAA 309 (531)
T ss_pred CC--HHHHHHHHHHHHH----------------------H----cCCCcCHHHHHHHHHhhh-----hHHHHHHHHHHHH
Confidence 33 3445444433211 1 236899999998888775 3599999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHH
Q 004256 380 CLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 380 a~A~l~gr~~Vt~edv~~A~~ 400 (765)
.+|..+++..|+.+||++++.
T Consensus 310 ~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 310 GIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred HHHhhCCCcEEcHHHHHHHhC
Confidence 999999999999999999964
No 40
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.88 E-value=7.8e-22 Score=214.92 Aligned_cols=265 Identities=29% Similarity=0.366 Sum_probs=199.9
Q ss_pred CceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccccccccc
Q 004256 95 AAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTA 174 (765)
Q Consensus 95 ~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (765)
..++|++..+..+.++.. ..+||||.|+||||||++|+.++..+.
T Consensus 24 ~~~~g~~~~~~~~l~a~~--~~~~vll~G~PG~gKT~la~~lA~~l~--------------------------------- 68 (329)
T COG0714 24 KVVVGDEEVIELALLALL--AGGHVLLEGPPGVGKTLLARALARALG--------------------------------- 68 (329)
T ss_pred CeeeccHHHHHHHHHHHH--cCCCEEEECCCCccHHHHHHHHHHHhC---------------------------------
Confidence 348999999988877776 679999999999999999999999874
Q ss_pred CcccccccCCCeEe--CCCCCcccceeeecccccccc-cCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcC
Q 004256 175 GNLKTQIARSPFVQ--IPLGVTEDRLIGSVDVEESVK-TGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG 251 (765)
Q Consensus 175 ~~~~~~~~~~~~v~--l~~~~~e~~L~G~~d~e~~~~-~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~ 251 (765)
.+|+. +...++..+++|..++..... .+...+.+|.+..+.+++||+||||+.++.+|+.||.+|+++
T Consensus 69 ---------~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~ 139 (329)
T COG0714 69 ---------LPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEER 139 (329)
T ss_pred ---------CCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCc
Confidence 34444 455688889999876654433 566778899998888899999999999999999999999999
Q ss_pred ceEEEeCCeeEEeeCceEEEEeecCCC----CCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccc
Q 004256 252 VNIVEREGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (765)
Q Consensus 252 ~~~v~r~G~~~~~p~~~~lIat~N~~e----g~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~ 327 (765)
.+++...+. ...|..|++|+|+||.+ ..+.++++|||.+.+.+.+|...++...+.............. ....
T Consensus 140 ~vtv~~~~~-~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~--~v~~ 216 (329)
T COG0714 140 QVTVPGLTT-IRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLES--LVKP 216 (329)
T ss_pred EEEECCcCC-cCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCccccccccch--hhhh
Confidence 966643332 77888999999999843 3578999999988888988755554444443222111000000 0000
Q ss_pred cCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCC-------CCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQ-------GHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 328 ~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~-------s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
--.....+..+....++.+++++..++..+....... |+|+...++..+++.|.+.|+..+.++|+...+.
T Consensus 217 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~ 294 (329)
T COG0714 217 --VLSDEELLRLQKEVKKVPVSDEVIDYIVTLVAALREAPDVALGASPRASLALLAALRALALLDGRDAVIPDDVKALAE 294 (329)
T ss_pred --hhCHHHHHHHHhhhccCCchHHHHHHHHHHHHhhccccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhh
Confidence 0111223333444457899999999988876554322 7999999999999999999999999999999999
Q ss_pred HhcCCCcC
Q 004256 401 LVILPRSI 408 (765)
Q Consensus 401 lvl~hR~~ 408 (765)
.++.||..
T Consensus 295 ~~~~~~~~ 302 (329)
T COG0714 295 PALAHRLI 302 (329)
T ss_pred hhhhhhhh
Confidence 99999975
No 41
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.87 E-value=1.4e-22 Score=219.94 Aligned_cols=263 Identities=21% Similarity=0.236 Sum_probs=178.5
Q ss_pred CceeechHHHHHHHHhhhcCC------------CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccc
Q 004256 95 AAVVGQDAIKTALLLGAIDRE------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (765)
Q Consensus 95 ~~ivG~~~~~~aL~l~~~~~~------------~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 162 (765)
..|.|.+.+|+++++..+... .-||||.|.||||||.|.+++++++|+-.
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v------------------ 85 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV------------------ 85 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE------------------
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE------------------
Confidence 368999999999977776432 23799999999999999999998887511
Q ss_pred ccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHH
Q 004256 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (765)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~ 242 (765)
+ +-..+.+...|+..+ .+.-.+|.+..++|.+..|++||++|||++.++.+...
T Consensus 86 -----------------------~-~~g~~~s~~gLta~~--~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~ 139 (331)
T PF00493_consen 86 -----------------------Y-TSGKGSSAAGLTASV--SRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRD 139 (331)
T ss_dssp -----------------------E-EECCGSTCCCCCEEE--CCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHH
T ss_pred -----------------------E-ECCCCcccCCcccee--ccccccceeEEeCCchhcccCceeeecccccccchHHH
Confidence 1 111223444555543 23344577888999999999999999999999999999
Q ss_pred HHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC------------CcchHHHhhhhcceeecCCCCHhhHHHHHHH
Q 004256 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (765)
Q Consensus 243 ~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg------------~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l 310 (765)
.|+++|+.+.+.|...|.....++++.|+|++||..| .+++.|++||++++.+..+++.+.-..|...
T Consensus 140 ~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~ 219 (331)
T PF00493_consen 140 ALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEH 219 (331)
T ss_dssp HHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHH
T ss_pred HHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceE
Confidence 9999999999999999999999999999999999765 3667999999998766656666655556554
Q ss_pred HHHHHHhhH----HHhcc--ccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCC----------CCCCChHHHH
Q 004256 311 ATQFQERSN----EVFKM--VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG----------CQGHRAELYA 374 (765)
Q Consensus 311 ~~~~~~~~~----~~~~~--~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g----------~~s~Ra~i~l 374 (765)
+........ ..... .....+.+...+..++... ...+++++.+.|..+..... ..+.|.+..+
T Consensus 220 il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~-~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSL 298 (331)
T PF00493_consen 220 ILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNI-HPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESL 298 (331)
T ss_dssp HHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC---EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHH
T ss_pred EEeccccccccccccccccCCccCHHHHHHHHHHHHhhc-ccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHH
Confidence 332211110 00111 1222334455566666333 34799999999988764331 2378999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 004256 375 ARVAKCLAALEGREKVNVDDLKKAVELV 402 (765)
Q Consensus 375 lr~A~a~A~l~gr~~Vt~edv~~A~~lv 402 (765)
+|+|.++|.++.+++|+.+|+..|+.++
T Consensus 299 IRLseA~AKl~lr~~V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 299 IRLSEAHAKLRLRDEVTEEDVEEAIRLF 326 (331)
T ss_dssp HHHHHHHHHCTTSSECSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCceeHHHHHHHHHHH
Confidence 9999999999999999999999999875
No 42
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.85 E-value=2.4e-20 Score=187.30 Aligned_cols=164 Identities=19% Similarity=0.211 Sum_probs=129.2
Q ss_pred cCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCC---------ccHHHHHHHhhc
Q 004256 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPS---------RSIAMARKRLER 629 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t---------~~~~~~~~~l~~ 629 (765)
..+.+++||||+||||.+.|++.+|.++..++. .+.++|+|+||.|++. +..++|++ .+...+...|..
T Consensus 11 ~~p~~vv~llD~SgSM~~~~l~~ak~~~~~ll~-~l~~~d~v~lv~F~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (190)
T cd01463 11 TSPKDIVILLDVSGSMTGQRLHLAKQTVSSILD-TLSDNDFFNIITFSNE-VNPVVPCFNDTLVQATTSNKKVLKEALDM 88 (190)
T ss_pred cCCceEEEEEECCCCCCcHHHHHHHHHHHHHHH-hCCCCCEEEEEEeCCC-eeEEeeecccceEecCHHHHHHHHHHHhh
Confidence 458999999999999999999999999988876 6788999999999999 77777753 256788899999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhhh---c--cCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHH
Q 004256 630 LPCGGGSPLAHGLSMAVRVGLNAE---K--SGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVA 704 (765)
Q Consensus 630 l~~gG~T~l~~aL~~A~~~l~~~~---~--~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 704 (765)
+.++|+|++..||..|++.+.... . ........|||||||.+|.. .++....
T Consensus 89 l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~-----------------------~~~~~~~ 145 (190)
T cd01463 89 LEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPENY-----------------------KEIFDKY 145 (190)
T ss_pred CCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCcH-----------------------hHHHHHh
Confidence 999999999999999999987621 1 11122457999999998742 1222221
Q ss_pred HHH--HhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCC
Q 004256 705 GKI--YKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNAS 747 (765)
Q Consensus 705 ~~~--~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~ 747 (765)
... ...++++++|++|....+..+|++||..+||.|+++++++
T Consensus 146 ~~~~~~~~~v~i~tigiG~~~~d~~~L~~lA~~~~G~~~~i~~~~ 190 (190)
T cd01463 146 NWDKNSEIPVRVFTYLIGREVTDRREIQWMACENKGYYSHIQSLD 190 (190)
T ss_pred cccccCCCcEEEEEEecCCccccchHHHHHHhhcCCeEEEcccCC
Confidence 111 1236999999999864478899999999999999998764
No 43
>PRK13685 hypothetical protein; Provisional
Probab=99.85 E-value=6.6e-20 Score=199.15 Aligned_cols=183 Identities=20% Similarity=0.298 Sum_probs=146.9
Q ss_pred cCCceEEEEEeCCCCCCc-----hhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCC
Q 004256 559 KAGALVIFVVDASGSMAL-----NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCG 633 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~-----~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~g 633 (765)
+.+.+++||||+||||.+ +|++.+|.++..++. .+.++|++|||+|+++ +.+++|+|.+...+...|+.+.++
T Consensus 86 ~~~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~-~l~~~d~vglv~Fa~~-a~~~~p~t~d~~~l~~~l~~l~~~ 163 (326)
T PRK13685 86 RNRAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFAD-ELTPGINLGLIAFAGT-ATVLVSPTTNREATKNAIDKLQLA 163 (326)
T ss_pred CCCceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHH-hCCCCCeEEEEEEcCc-eeecCCCCCCHHHHHHHHHhCCCC
Confidence 346789999999999974 799999999999997 4578999999999999 899999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHhhh---cc-CCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHh
Q 004256 634 GGSPLAHGLSMAVRVGLNAE---KS-GDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYK 709 (765)
Q Consensus 634 G~T~l~~aL~~A~~~l~~~~---~~-~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 709 (765)
|+|+++.+|..|++.+.... .. .......|||+|||..|.+.+.. . + .....+++.+++
T Consensus 164 ~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~--~---------~------~~~~~aa~~a~~ 226 (326)
T PRK13685 164 DRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPD--N---------P------RGAYTAARTAKD 226 (326)
T ss_pred CCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCC--C---------c------ccHHHHHHHHHH
Confidence 99999999999999876421 10 11123468999999988653210 0 0 112456677788
Q ss_pred CCCEEEEEeCCCC-------------CCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHHHHHhh
Q 004256 710 AGMSLLVIDTENK-------------FVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDALSAL 762 (765)
Q Consensus 710 ~gi~~~vig~~~~-------------~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~~~~~~ 762 (765)
.||.+++|++|.. ..+...|++||+.+||+||++++. +++.++++++...+
T Consensus 227 ~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~~~~--~~L~~if~~I~~~~ 290 (326)
T PRK13685 227 QGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTAASL--EELRAVYATLQQQI 290 (326)
T ss_pred cCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEcCCH--HHHHHHHHHHHHHh
Confidence 9999999998863 247889999999999999999864 56888888876655
No 44
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.84 E-value=1.4e-19 Score=177.96 Aligned_cols=162 Identities=23% Similarity=0.358 Sum_probs=133.0
Q ss_pred ceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhhcCCCCCCChhH
Q 004256 562 ALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLPCGGGSPLA 639 (765)
Q Consensus 562 ~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~--~~~~~~~~l~~l~~gG~T~l~ 639 (765)
.+++||||+||||.+.++..+|.++..++. .+.+.++|++|.|++. ...+++++. +...+...|..+.++|+|++.
T Consensus 1 ~~~~~vlD~S~SM~~~~~~~~k~a~~~~~~-~l~~~~~v~li~f~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~g~T~~~ 78 (170)
T cd01465 1 LNLVFVIDRSGSMDGPKLPLVKSALKLLVD-QLRPDDRLAIVTYDGA-AETVLPATPVRDKAAILAAIDRLTAGGSTAGG 78 (170)
T ss_pred CcEEEEEECCCCCCChhHHHHHHHHHHHHH-hCCCCCEEEEEEecCC-ccEEecCcccchHHHHHHHHHcCCCCCCCCHH
Confidence 368999999999998889999997776665 7788999999999998 778888764 678888899999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEEEeC
Q 004256 640 HGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLVIDT 719 (765)
Q Consensus 640 ~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vig~ 719 (765)
.+|..|++.+.+...... ...|||+|||.+|.+.. ..+++.+.++.++..++.+++|++
T Consensus 79 ~al~~a~~~~~~~~~~~~--~~~ivl~TDG~~~~~~~-------------------~~~~~~~~~~~~~~~~v~i~~i~~ 137 (170)
T cd01465 79 AGIQLGYQEAQKHFVPGG--VNRILLATDGDFNVGET-------------------DPDELARLVAQKRESGITLSTLGF 137 (170)
T ss_pred HHHHHHHHHHHhhcCCCC--eeEEEEEeCCCCCCCCC-------------------CHHHHHHHHHHhhcCCeEEEEEEe
Confidence 999999998876433221 24689999999886421 124566667777888999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEEcCCCC
Q 004256 720 ENKFVSTGFAKEIARVAQGKYYYLPNAS 747 (765)
Q Consensus 720 ~~~~~~~~~l~~LA~~~gG~y~~~~~~~ 747 (765)
|. ..+..+|++||+.++|.|+++++.+
T Consensus 138 g~-~~~~~~l~~ia~~~~g~~~~~~~~~ 164 (170)
T cd01465 138 GD-NYNEDLMEAIADAGNGNTAYIDNLA 164 (170)
T ss_pred CC-CcCHHHHHHHHhcCCceEEEeCCHH
Confidence 95 4588999999999999999998543
No 45
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.84 E-value=5.5e-20 Score=193.78 Aligned_cols=214 Identities=21% Similarity=0.173 Sum_probs=140.9
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCc
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~ 194 (765)
...+|||.||+|||||++|++||+.+.. +...++|++ ...
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~----~~~~i~~~~------------------------------------~~~ 59 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDR----PVMLINGDA------------------------------------ELT 59 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCC----CEEEEeCCc------------------------------------cCC
Confidence 5679999999999999999999986532 111223322 122
Q ss_pred ccceeeeccccc--------------ccccCCCcccCCceee--ccCCeEeccccccCCHHHHHHHHHHHHcCceEEEeC
Q 004256 195 EDRLIGSVDVEE--------------SVKTGTTVFQPGLLAE--AHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVERE 258 (765)
Q Consensus 195 e~~L~G~~d~e~--------------~~~~g~~~~~~Gll~~--A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~ 258 (765)
..+++|...... ........+.+|.+.. .+|++|||||||++++++|+.|+.+|+++.+.+...
T Consensus 60 ~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~ 139 (262)
T TIGR02640 60 TSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGK 139 (262)
T ss_pred HHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCC
Confidence 234444321000 0001122455776664 478999999999999999999999999998665322
Q ss_pred ---CeeEEeeCceEEEEeecCCC----CCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcH
Q 004256 259 ---GISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDL 331 (765)
Q Consensus 259 ---G~~~~~p~~~~lIat~N~~e----g~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~ 331 (765)
+.....+.+|++|+|+|+.. ..++++|++||.. +.+.+| +.++..+|+... +
T Consensus 140 ~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~-i~i~~P-~~~~e~~Il~~~--~----------------- 198 (262)
T TIGR02640 140 RGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLIT-IFMDYP-DIDTETAILRAK--T----------------- 198 (262)
T ss_pred CCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEE-EECCCC-CHHHHHHHHHHh--h-----------------
Confidence 23344556899999999864 2568999999954 478865 566555565421 1
Q ss_pred HHHHHHHHhcccCCccCCHHHHHHHHHHHHhC------CCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC
Q 004256 332 AKTQIILAREYLKDVAIGREQLKYLVMEALRG------GCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (765)
Q Consensus 332 ~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~------g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~h 405 (765)
.++++..+++++++... ...|.|+.+.+.+.++ .+.++..|+++|+.+++.-||.|
T Consensus 199 ---------------~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 199 ---------------DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVAT---QQDIPVDVDDEDFVDLCIDILAS 260 (262)
T ss_pred ---------------CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHH---HcCCCCCCCcHHHHHHHHHHhcc
Confidence 13444555555543222 1235566666555554 55779999999999999999999
Q ss_pred Cc
Q 004256 406 RS 407 (765)
Q Consensus 406 R~ 407 (765)
|.
T Consensus 261 ~~ 262 (262)
T TIGR02640 261 RV 262 (262)
T ss_pred CC
Confidence 84
No 46
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.84 E-value=7.2e-20 Score=177.62 Aligned_cols=149 Identities=25% Similarity=0.344 Sum_probs=121.8
Q ss_pred eEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCc----cHHHHHHHhhcCCCCCCChh
Q 004256 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR----SIAMARKRLERLPCGGGSPL 638 (765)
Q Consensus 563 ~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~----~~~~~~~~l~~l~~gG~T~l 638 (765)
+++||||+||||.++|+..+|.++..++. .+.++|+++||.|++. +.+++|++. +...+...+..+.++|+|++
T Consensus 2 ~v~~vlD~S~SM~~~rl~~ak~a~~~l~~-~l~~~~~~~li~F~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~ 79 (155)
T cd01466 2 DLVAVLDVSGSMAGDKLQLVKHALRFVIS-SLGDADRLSIVTFSTS-AKRLSPLRRMTAKGKRSAKRVVDGLQAGGGTNV 79 (155)
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHHHHH-hCCCcceEEEEEecCC-ccccCCCcccCHHHHHHHHHHHHhccCCCCccH
Confidence 68999999999998999999988776654 7788999999999998 888888873 56788899999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEEEe
Q 004256 639 AHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLVID 718 (765)
Q Consensus 639 ~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vig 718 (765)
+.||..|.+.+......+ ....|||+|||.+|.+ . . .....+.++.+++|+
T Consensus 80 ~~al~~a~~~~~~~~~~~--~~~~iillTDG~~~~~-~----------------------~----~~~~~~~~v~v~~ig 130 (155)
T cd01466 80 VGGLKKALKVLGDRRQKN--PVASIMLLSDGQDNHG-A----------------------V----VLRADNAPIPIHTFG 130 (155)
T ss_pred HHHHHHHHHHHhhcccCC--CceEEEEEcCCCCCcc-h----------------------h----hhcccCCCceEEEEe
Confidence 999999999986532222 2457999999998743 0 0 112345789999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCeEEEc
Q 004256 719 TENKFVSTGFAKEIARVAQGKYYYL 743 (765)
Q Consensus 719 ~~~~~~~~~~l~~LA~~~gG~y~~~ 743 (765)
++... +...|++||..+||+||++
T Consensus 131 ig~~~-~~~~l~~iA~~t~G~~~~~ 154 (155)
T cd01466 131 LGASH-DPALLAFIAEITGGTFSYV 154 (155)
T ss_pred cCCCC-CHHHHHHHHhccCceEEEe
Confidence 99643 7899999999999999986
No 47
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=99.82 E-value=5e-19 Score=176.21 Aligned_cols=165 Identities=21% Similarity=0.258 Sum_probs=133.0
Q ss_pred ceEEEEEeCCCCCCc-----hhHHHHHHHHHHHHHhh--cCCCCeEEEEEe-eCCCcEEEcCCCccHHHHHHHhhcC-CC
Q 004256 562 ALVIFVVDASGSMAL-----NRMQNAKGAALKLLAES--YTCRDQVSIIPF-RGDSAEVLLPPSRSIAMARKRLERL-PC 632 (765)
Q Consensus 562 ~~vv~vvD~SgSM~~-----~rl~~ak~a~~~ll~~~--~~~~d~v~lv~F-~~~~a~~~~p~t~~~~~~~~~l~~l-~~ 632 (765)
++++|+||+|+||.. +||+.+|.++..|+... ..+.+++|||+| ++. ++++.|+|.+...+...|..+ ++
T Consensus 4 r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~-a~~~~PlT~D~~~~~~~L~~~~~~ 82 (183)
T cd01453 4 RHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGR-AEKLTDLTGNPRKHIQALKTAREC 82 (183)
T ss_pred eEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCc-cEEEECCCCCHHHHHHHhhcccCC
Confidence 579999999999964 79999999999998753 246799999999 566 999999999999888888876 67
Q ss_pred CCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCC
Q 004256 633 GGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGM 712 (765)
Q Consensus 633 gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi 712 (765)
+|+|++..||..|.+.+.... ....+.+|||+|||..+.+ .++.++++.+++.||
T Consensus 83 ~G~t~l~~aL~~A~~~l~~~~--~~~~~~iiil~sd~~~~~~-----------------------~~~~~~~~~l~~~~I 137 (183)
T cd01453 83 SGEPSLQNGLEMALESLKHMP--SHGSREVLIIFSSLSTCDP-----------------------GNIYETIDKLKKENI 137 (183)
T ss_pred CCchhHHHHHHHHHHHHhcCC--ccCceEEEEEEcCCCcCCh-----------------------hhHHHHHHHHHHcCc
Confidence 788999999999999987432 1122447888998864311 233456788889999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHH
Q 004256 713 SLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKD 757 (765)
Q Consensus 713 ~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~ 757 (765)
++++|++|. +...|++||+.+||+||.+.+. ++|.+++..
T Consensus 138 ~v~~IgiG~---~~~~L~~ia~~tgG~~~~~~~~--~~l~~~~~~ 177 (183)
T cd01453 138 RVSVIGLSA---EMHICKEICKATNGTYKVILDE--THLKELLLE 177 (183)
T ss_pred EEEEEEech---HHHHHHHHHHHhCCeeEeeCCH--HHHHHHHHh
Confidence 999999986 4578999999999999998754 577777655
No 48
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.82 E-value=3.8e-19 Score=206.61 Aligned_cols=281 Identities=23% Similarity=0.301 Sum_probs=189.0
Q ss_pred CCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccc-----cccc
Q 004256 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE-----DGLD 166 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 166 (765)
.-|++|+|++.++..+..+... ..+++|+||||||||++++++++.++.-.....++ --||.....+. ..+.
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~--~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~-~~n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ--KRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILV-YPNPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc--CCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEE-EeCCCCCchHHHHHHHHhhc
Confidence 4567899999999998766653 36999999999999999999999998532111111 12232222110 0000
Q ss_pred ccc---------------------------c---cc----------------------------cc---Cc--ccccccC
Q 004256 167 EKA---------------------------E---YD----------------------------TA---GN--LKTQIAR 183 (765)
Q Consensus 167 ~~~---------------------------~---~~----------------------------~~---~~--~~~~~~~ 183 (765)
.++ . +. .. +. -++....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~lv~~s~~~~ 171 (608)
T TIGR00764 92 REIVEDYKKKAFKQPSSRNLLLFMIGFIVLSEYFLKNLPPNYLLAAVIAAALILLIFGFFIPRTSIMVPKLLVDNSGKKK 171 (608)
T ss_pred hHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcccchhceeeeeecCCCCCC
Confidence 000 0 00 00 00 0223356
Q ss_pred CCeEeCCCCCcccceeeeccccc-----ccccCC-CcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEEEe
Q 004256 184 SPFVQIPLGVTEDRLIGSVDVEE-----SVKTGT-TVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVER 257 (765)
Q Consensus 184 ~~~v~l~~~~~e~~L~G~~d~e~-----~~~~g~-~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r 257 (765)
.|||..++ .+-..|||.+..+- ++.++. ...++|+|.+||||+|||||++.|++..|..|+++|+++.+.+
T Consensus 172 ~P~v~~~~-~~~~~L~G~i~~~~~~g~~g~~~~~~~~i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~-- 248 (608)
T TIGR00764 172 APFVDATG-AHAGALLGDVRHDPFQGSGGLGTPAHERVEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPI-- 248 (608)
T ss_pred CCEEEeCC-CChHHCccceeeccccCccccccCccccCCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEe--
Confidence 78887433 22357888763211 122222 3457999999999999999999999999999999999999544
Q ss_pred CCe----------eEEeeCceEEEEeecCCC-CCcchHHHhhhh---cceee--cCCCCHhhHHHHHHHHHHHHHhhHHH
Q 004256 258 EGI----------SFKHPCKPLLIATYNPEE-GVVREHLLDRIA---INLSA--DLPMTFEDRVAAVGIATQFQERSNEV 321 (765)
Q Consensus 258 ~G~----------~~~~p~~~~lIat~N~~e-g~l~~~L~dRf~---~~v~i--~~p~~~e~r~dI~~l~~~~~~~~~~~ 321 (765)
.|. ....|+++++|+++|++. ..++++|++||. +.+.+ ..|.+.+.+.++...+....
T Consensus 249 ~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~------ 322 (608)
T TIGR00764 249 TGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEV------ 322 (608)
T ss_pred cCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHH------
Confidence 443 245789999999999864 479999999999 44433 45777888777755332221
Q ss_pred hccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHh-CCCC-----CCChHHHHHHHHHHHHHHcCCCCCCHHHH
Q 004256 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR-GGCQ-----GHRAELYAARVAKCLAALEGREKVNVDDL 395 (765)
Q Consensus 322 ~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~-~g~~-----s~Ra~i~llr~A~a~A~l~gr~~Vt~edv 395 (765)
..+... -.+++++++.+.+.+.+ .|.. +.|....++|.|..+|..++...|+.+||
T Consensus 323 ----------------~r~G~l--~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV 384 (608)
T TIGR00764 323 ----------------KKDGRI--PHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHV 384 (608)
T ss_pred ----------------HHhCCC--CcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHH
Confidence 111011 16888888888876553 2322 24889999999999999999999999999
Q ss_pred HHHHHHh
Q 004256 396 KKAVELV 402 (765)
Q Consensus 396 ~~A~~lv 402 (765)
.+|++..
T Consensus 385 ~~Ai~~~ 391 (608)
T TIGR00764 385 LKAKKLA 391 (608)
T ss_pred HHHHHHH
Confidence 9998864
No 49
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.82 E-value=5.1e-19 Score=202.90 Aligned_cols=266 Identities=20% Similarity=0.197 Sum_probs=196.6
Q ss_pred CceeechHHHHHHHHhhhcC------------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccc
Q 004256 95 AAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (765)
Q Consensus 95 ~~ivG~~~~~~aL~l~~~~~------------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 162 (765)
..|.|++.+|+++++..+.. ++-||||.|.||||||.|.|.+++.+|+.-
T Consensus 286 PsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~v------------------ 347 (682)
T COG1241 286 PSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGV------------------ 347 (682)
T ss_pred ccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceE------------------
Confidence 46999999999998877742 124699999999999999999999998611
Q ss_pred ccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHH
Q 004256 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (765)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~ 242 (765)
|. -..+.+...|...+. +.-.+|.+....|.|..|++||++|||++.|+.....
T Consensus 348 -----------------------yt-sgkgss~~GLTAav~--rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~ 401 (682)
T COG1241 348 -----------------------YT-SGKGSSAAGLTAAVV--RDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRV 401 (682)
T ss_pred -----------------------EE-ccccccccCceeEEE--EccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHHH
Confidence 11 111222233333221 2223466778899999999999999999999999999
Q ss_pred HHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC------------CcchHHHhhhhcceeecCCCCHhhHHHHHHH
Q 004256 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (765)
Q Consensus 243 ~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg------------~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l 310 (765)
.|+.+|+++.+.+...|+....++++.++|+.||..| .|++.|++||++++-+..-++.+.-..|...
T Consensus 402 aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~h 481 (682)
T COG1241 402 AIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEH 481 (682)
T ss_pred HHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHH
Confidence 9999999999999999999999999999999999665 3668999999998766555566655666655
Q ss_pred HHHHHHh--hHHH-hccccc-----cCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCC------------CCCCh
Q 004256 311 ATQFQER--SNEV-FKMVEE-----ETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC------------QGHRA 370 (765)
Q Consensus 311 ~~~~~~~--~~~~-~~~~~~-----~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~------------~s~Ra 370 (765)
+...-.. .... ...... ..+.+...+..|+... .-.+++++.+.|.++.....- .+.|.
T Consensus 482 il~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v-~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~Rq 560 (682)
T COG1241 482 ILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNV-TPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQ 560 (682)
T ss_pred HHHHHhccccccccccccccccccCcHHHHHHHHHHHhccC-CcccCHHHHHHHHHHHHHhhhccccccccCcccccHHH
Confidence 4432110 0000 000000 1223556666666532 147999999999887655431 36799
Q ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC
Q 004256 371 ELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (765)
Q Consensus 371 ~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~h 405 (765)
+..++|++.|+|.++-.+.|+.+|+.+|++++..-
T Consensus 561 LEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~ 595 (682)
T COG1241 561 LESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFS 595 (682)
T ss_pred HHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987643
No 50
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=99.81 E-value=2.7e-19 Score=191.88 Aligned_cols=328 Identities=20% Similarity=0.191 Sum_probs=216.3
Q ss_pred ccccchhHHHHHHhcCCCcccccCCCCccccCCCCccHHHHHHHHHHHHHHH--HH---HHHHhhhccccccccCCCCCC
Q 004256 20 SHLQQSCSVVSSLKLHPLLFSYSPPPFFKFRTRPKHHRFFHVRASSSNATLD--SA---NGAVAAASEDQDSYGRQFFPL 94 (765)
Q Consensus 20 ~~~~~~~~~~~~~~~g~~~~d~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~f 94 (765)
..|+-..+..++|++|.++--||+--+-....+..+..... ...+...++ .+ .+.+..++ -
T Consensus 276 iFLP~pytGfr~~~aGLladtYLeAh~v~~~nk~~~~~~~~--~~~~~~~~~~~~~~d~yekLa~Si----------A-- 341 (721)
T KOG0482|consen 276 IFLPIPYTGFRALKAGLLADTYLEAHRVVQINKKYDNIEKT--GELEPEELELIAEGDFYEKLAASI----------A-- 341 (721)
T ss_pred eecccchhhHHHHHhhhHHHHHHHHhhhhhhcccccccccc--ccccHHHHHHhhcccHHHHHHHhh----------c--
Confidence 36888899999999997777787763211100000000000 000000000 00 11122221 1
Q ss_pred CceeechHHHHHHHHhhhcC------------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccc
Q 004256 95 AAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (765)
Q Consensus 95 ~~ivG~~~~~~aL~l~~~~~------------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 162 (765)
.+|.|++.+|++|++..+.. ++-+|++.|.||++||.|.++|.++.||-
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRg------------------- 402 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRG------------------- 402 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCccc-------------------
Confidence 36999999999997777632 12359999999999999999999999861
Q ss_pred ccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHH
Q 004256 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (765)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~ 242 (765)
.||.+. ...=|-+..... +..-+|+...+-|.|..|++||.+|||++.|...-..
T Consensus 403 -------vYTTGr-------GSSGVGLTAAVm-----------kDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRt 457 (721)
T KOG0482|consen 403 -------VYTTGR-------GSSGVGLTAAVM-----------KDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRT 457 (721)
T ss_pred -------ceecCC-------CCCccccchhhh-----------cCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhH
Confidence 111111 101111222222 3333466667778999999999999999999999999
Q ss_pred HHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC------------CcchHHHhhhhcceeecCCCCHhhHHHHHHH
Q 004256 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (765)
Q Consensus 243 ~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg------------~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l 310 (765)
++.++|+...+.|...|+.....++..++|+.||.-| .|+++|++||++..-+..-|+++.-..+.+.
T Consensus 458 AIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~H 537 (721)
T KOG0482|consen 458 AIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQH 537 (721)
T ss_pred HHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHH
Confidence 9999999999999999999999999999999999544 4778999999997545445566655555554
Q ss_pred HHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHh----------CCCCCCChHHHHHHHHHH
Q 004256 311 ATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR----------GGCQGHRAELYAARVAKC 380 (765)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~----------~g~~s~Ra~i~llr~A~a 380 (765)
+.+. +.............+....+...+...-.+-.+++++-++|+....+ +...++|-++.++|.+.|
T Consensus 538 iTyV-H~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~A 616 (721)
T KOG0482|consen 538 ITYV-HQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTA 616 (721)
T ss_pred hHhh-hccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHH
Confidence 4332 22222211122223333333333333334456788888887765432 235689999999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHhcCCC
Q 004256 381 LAALEGREKVNVDDLKKAVELVILPR 406 (765)
Q Consensus 381 ~A~l~gr~~Vt~edv~~A~~lvl~hR 406 (765)
+|.|+-.+.|..+||.+|++|+-..+
T Consensus 617 larLRls~~V~~~DV~EALRLme~sK 642 (721)
T KOG0482|consen 617 LARLRLSDSVEEDDVNEALRLMEMSK 642 (721)
T ss_pred HHHhhhccccchhhHHHHHHHHHhhh
Confidence 99999999999999999999865443
No 51
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=99.80 E-value=1.2e-18 Score=191.93 Aligned_cols=263 Identities=17% Similarity=0.227 Sum_probs=189.0
Q ss_pred CCceeechHHHHHHHHhhhcC------------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcc
Q 004256 94 LAAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (765)
Q Consensus 94 f~~ivG~~~~~~aL~l~~~~~------------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (765)
|..|.|++.+|..+++..+.. ++-||+|+|.||||||.+.++....+||. .|.|
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~------vYts-------- 409 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRS------VYTS-------- 409 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcc------eEec--------
Confidence 568999999999997776621 23469999999999999999999999971 1111
Q ss_pred cccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHH
Q 004256 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (765)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q 241 (765)
++ ..+...|.-.+ -+...+|......|.|..|++||.+|||++.|+..-|
T Consensus 410 ------------Gk----------------aSSaAGLTaaV--vkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dq 459 (764)
T KOG0480|consen 410 ------------GK----------------ASSAAGLTAAV--VKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQ 459 (764)
T ss_pred ------------Cc----------------ccccccceEEE--EecCCCCceeeecCcEEEccCceEEechhcccChHhH
Confidence 10 01112222221 2444567778889999999999999999999999999
Q ss_pred HHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC------------CcchHHHhhhhcceeecCCCCHhhHHHHHH
Q 004256 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVG 309 (765)
Q Consensus 242 ~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg------------~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~ 309 (765)
.+|+++|++..+.|.+.|..-..+++..+||+.||-.| .++++|++||++++-+-.-++...-..|..
T Consensus 460 vAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~ 539 (764)
T KOG0480|consen 460 VAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIAR 539 (764)
T ss_pred HHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHH
Confidence 99999999999999999999999999999999999554 477999999999753332223332233444
Q ss_pred HHHHHHHhhHHHhcc-ccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhC--------C----CCCCChHHHHHH
Q 004256 310 IATQFQERSNEVFKM-VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG--------G----CQGHRAELYAAR 376 (765)
Q Consensus 310 l~~~~~~~~~~~~~~-~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~--------g----~~s~Ra~i~llr 376 (765)
.+............. ..-..+.....+..|+...+ .++.++-+.|.+....+ + -.+.|.+..++|
T Consensus 540 hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P--~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIR 617 (764)
T KOG0480|consen 540 HILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKP--KLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIR 617 (764)
T ss_pred HHHHHhccccccccccccccHHHHHHHHHHHHhcCc--cccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHH
Confidence 333221111111000 12233455666666775544 56777777776654332 1 236799999999
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHh
Q 004256 377 VAKCLAALEGREKVNVDDLKKAVELV 402 (765)
Q Consensus 377 ~A~a~A~l~gr~~Vt~edv~~A~~lv 402 (765)
++.|+|.++-+++||++|+.+|+++.
T Consensus 618 LsEA~Ar~~~~devt~~~v~ea~eLl 643 (764)
T KOG0480|consen 618 LSEARARVECRDEVTKEDVEEAVELL 643 (764)
T ss_pred HHHHHHhhhhhhhccHHHHHHHHHHH
Confidence 99999999999999999999999974
No 52
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=99.80 E-value=2.1e-18 Score=169.62 Aligned_cols=158 Identities=25% Similarity=0.334 Sum_probs=126.3
Q ss_pred CceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCC-----ccHHHHHHHhhcCCCCCC
Q 004256 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPS-----RSIAMARKRLERLPCGGG 635 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t-----~~~~~~~~~l~~l~~gG~ 635 (765)
+.+++||||+||||.+.++..+|.++..++. .+.+.++++||.|++. ...+.+.+ .+...+...|..+.++|+
T Consensus 2 ~~~v~~vlD~S~SM~~~~~~~~~~al~~~l~-~l~~~~~~~l~~Fs~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 79 (171)
T cd01461 2 PKEVVFVIDTSGSMSGTKIEQTKEALLTALK-DLPPGDYFNIIGFSDT-VEEFSPSSVSATAENVAAAIEYVNRLQALGG 79 (171)
T ss_pred CceEEEEEECCCCCCChhHHHHHHHHHHHHH-hCCCCCEEEEEEeCCC-ceeecCcceeCCHHHHHHHHHHHHhcCCCCC
Confidence 5789999999999999999999998877775 6778899999999988 66655542 145667778888999999
Q ss_pred ChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEE
Q 004256 636 SPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLL 715 (765)
Q Consensus 636 T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~ 715 (765)
|++..||..|++.+... ......|||+|||..+.+ .++...++.+.+.++.++
T Consensus 80 T~l~~al~~a~~~l~~~----~~~~~~iillTDG~~~~~-----------------------~~~~~~~~~~~~~~i~i~ 132 (171)
T cd01461 80 TNMNDALEAALELLNSS----PGSVPQIILLTDGEVTNE-----------------------SQILKNVREALSGRIRLF 132 (171)
T ss_pred cCHHHHHHHHHHhhccC----CCCccEEEEEeCCCCCCH-----------------------HHHHHHHHHhcCCCceEE
Confidence 99999999999887541 122458999999985421 345566666666699999
Q ss_pred EEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCCh
Q 004256 716 VIDTENKFVSTGFAKEIARVAQGKYYYLPNASD 748 (765)
Q Consensus 716 vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~ 748 (765)
+|+++.+. +..+|++||+.+||.|+++.+.++
T Consensus 133 ~i~~g~~~-~~~~l~~ia~~~gG~~~~~~~~~~ 164 (171)
T cd01461 133 TFGIGSDV-NTYLLERLAREGRGIARRIYETDD 164 (171)
T ss_pred EEEeCCcc-CHHHHHHHHHcCCCeEEEecChHH
Confidence 99999754 688999999999999999986543
No 53
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.80 E-value=1.5e-18 Score=176.45 Aligned_cols=159 Identities=27% Similarity=0.299 Sum_probs=123.1
Q ss_pred hccCCceEEEEEeCCCCCC------chhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCC-----cEEEc---CCC-----
Q 004256 557 ARKAGALVIFVVDASGSMA------LNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDS-----AEVLL---PPS----- 617 (765)
Q Consensus 557 ~~~~~~~vv~vvD~SgSM~------~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~-----a~~~~---p~t----- 617 (765)
..+.+.+++||||+||||. ++||..+|.++..++. .+.++++|+||.|++.. ...++ +++
T Consensus 16 ~~~~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~-~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~~ 94 (206)
T cd01456 16 EPQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETAN-ALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNG 94 (206)
T ss_pred ccCCCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHH-hCCCCceEEEEEecCCCCCCccccccccccccccccCC
Confidence 4456899999999999997 4899999999999987 57889999999999841 22333 221
Q ss_pred ---ccHHHHHHHhhcCC-CCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCc
Q 004256 618 ---RSIAMARKRLERLP-CGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSS 693 (765)
Q Consensus 618 ---~~~~~~~~~l~~l~-~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~ 693 (765)
.+...+...|+.+. ++|+|+|..||..|.+.+. .+ ....|||||||.+|.+.+
T Consensus 95 ~~~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~----~~--~~~~iillTDG~~~~~~~----------------- 151 (206)
T cd01456 95 FPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD----PG--RVNVVVLITDGEDTCGPD----------------- 151 (206)
T ss_pred CCcccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC----CC--CcceEEEEcCCCccCCCC-----------------
Confidence 36788999999998 9999999999999998875 11 124799999999875421
Q ss_pred hhHHHHHHHHHHHHHh-----CCCEEEEEeCCCCCCCHHHHHHHHHHcCCeE-EEcCCC
Q 004256 694 QELKDEILEVAGKIYK-----AGMSLLVIDTENKFVSTGFAKEIARVAQGKY-YYLPNA 746 (765)
Q Consensus 694 ~~~~~~~~~~a~~~~~-----~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y-~~~~~~ 746 (765)
....++.+.+ .+|.+++|++|.+ .+...|++||..+||.| |...++
T Consensus 152 ------~~~~~~~~~~~~~~~~~i~i~~igiG~~-~~~~~l~~iA~~tgG~~~~~~~~~ 203 (206)
T cd01456 152 ------PCEVARELAKRRTPAPPIKVNVIDFGGD-ADRAELEAIAEATGGTYAYNQSDL 203 (206)
T ss_pred ------HHHHHHHHHHhcCCCCCceEEEEEecCc-ccHHHHHHHHHhcCCeEecccccc
Confidence 1122333332 4899999999985 37899999999999999 776654
No 54
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=99.79 E-value=4.7e-18 Score=182.73 Aligned_cols=179 Identities=23% Similarity=0.335 Sum_probs=142.5
Q ss_pred cCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCC------
Q 004256 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPC------ 632 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~------ 632 (765)
..+.+++||||+||||. .++..++.++..++...+.++|+++||.|++. +.++.++|.+...+...|+.+.+
T Consensus 51 ~~p~~vvlvlD~SgSM~-~~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~-~~~~~~~t~~~~~l~~~l~~l~~~~~~~~ 128 (296)
T TIGR03436 51 DLPLTVGLVIDTSGSMR-NDLDRARAAAIRFLKTVLRPNDRVFVVTFNTR-LRLLQDFTSDPRLLEAALNRLKPPLRTDY 128 (296)
T ss_pred CCCceEEEEEECCCCch-HHHHHHHHHHHHHHHhhCCCCCEEEEEEeCCc-eeEeecCCCCHHHHHHHHHhccCCCcccc
Confidence 35899999999999998 57889999999999876789999999999988 88899999999999999999987
Q ss_pred ---------CCCChhHHHHHHHHH-HHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHH
Q 004256 633 ---------GGGSPLAHGLSMAVR-VGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILE 702 (765)
Q Consensus 633 ---------gG~T~l~~aL~~A~~-~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (765)
+|+|+|..||..|.. ++.+.... ...+..|||||||..|.+ .....+
T Consensus 129 ~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~-~p~rk~iIllTDG~~~~~----------------------~~~~~~ 185 (296)
T TIGR03436 129 NSSGAFVRDGGGTALYDAITLAALEQLANALAG-IPGRKALIVISDGGDNRS----------------------RDTLER 185 (296)
T ss_pred ccccccccCCCcchhHHHHHHHHHHHHHHhhcC-CCCCeEEEEEecCCCcch----------------------HHHHHH
Confidence 899999999977754 44332221 123457999999987642 134456
Q ss_pred HHHHHHhCCCEEEEEeCCCCC------------CCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHHHHHhhhcC
Q 004256 703 VAGKIYKAGMSLLVIDTENKF------------VSTGFAKEIARVAQGKYYYLPNASDAVISATTKDALSALKNS 765 (765)
Q Consensus 703 ~a~~~~~~gi~~~vig~~~~~------------~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~~~~~~~~~ 765 (765)
+++.+.+.+|.+++|+++... .+...|++||+.+||+||+. + ...|..++..+.+.+.+|
T Consensus 186 ~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~-~--~~~l~~~f~~i~~~~~~~ 257 (296)
T TIGR03436 186 AIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFYV-N--SNDLDGAFAQIAEELRSQ 257 (296)
T ss_pred HHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEecc-c--CccHHHHHHHHHHHHhhe
Confidence 667778889999999987310 14689999999999999888 3 456778888888776653
No 55
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.79 E-value=1.1e-18 Score=202.04 Aligned_cols=285 Identities=22% Similarity=0.256 Sum_probs=192.8
Q ss_pred CCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccc-c-ccc-
Q 004256 90 QFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE-D-GLD- 166 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~- 166 (765)
.+..|++|+||+.++..|..+... ..+++|+||||||||++++++++.++.... ....|--||++...+. . .+.
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~--~~~~l~~G~~G~GKttla~~l~~~l~~~~~-~~~~~~~np~~~~~~~~~~v~~~ 102 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQ--RRHVMMIGSPGTGKSMLAKAMAELLPKEEL-QDILVYPNPEDPNNPKIRTVPAG 102 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHh--CCeEEEECCCCCcHHHHHHHHHHHcChHhH-HHheEeeCCCcchHHHHHHHHHh
Confidence 345678999999999998665553 368999999999999999999999875321 1112222243333220 0 000
Q ss_pred --ccc---------------------------ccc---c------------------------c----Cc--ccccccCC
Q 004256 167 --EKA---------------------------EYD---T------------------------A----GN--LKTQIARS 184 (765)
Q Consensus 167 --~~~---------------------------~~~---~------------------------~----~~--~~~~~~~~ 184 (765)
..+ .+. . . +. -+......
T Consensus 103 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nllv~ns~~~~a 182 (637)
T PRK13765 103 KGKQIVEAHKEEARKRNQMRNMLMMIIIAGIIGYAFIYAGQILWGIIAAGLIYMALRYFRPKEDAMVPKLLVNNADKKTA 182 (637)
T ss_pred cCHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcCceEEEEEEEeCCCCCCC
Confidence 000 000 0 0 00 02233567
Q ss_pred CeEeCCCCCcccceeeecccc----cccccCCCc-ccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCC
Q 004256 185 PFVQIPLGVTEDRLIGSVDVE----ESVKTGTTV-FQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREG 259 (765)
Q Consensus 185 ~~v~l~~~~~e~~L~G~~d~e----~~~~~g~~~-~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G 259 (765)
|||..++. +...|||++..+ .+++++... .++|.|.+||||+|||||++.|++..|..|+++|+++.+. +.|
T Consensus 183 Pvi~~~~p-~~~~LfG~i~~~~~~~Gg~~t~~~~~i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~--i~g 259 (637)
T PRK13765 183 PFVDATGA-HAGALLGDVRHDPFQSGGLETPAHDRVEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFP--ITG 259 (637)
T ss_pred CEEEeCCC-CHHHcCCccccccccccccccCccccCCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEE--ecc
Confidence 88876554 478899988633 145455444 4899999999999999999999999999999999999944 444
Q ss_pred e----------eEEeeCceEEEEeecCCC-CCcchHHHhhhhcc-eeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccc
Q 004256 260 I----------SFKHPCKPLLIATYNPEE-GVVREHLLDRIAIN-LSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (765)
Q Consensus 260 ~----------~~~~p~~~~lIat~N~~e-g~l~~~L~dRf~~~-v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~ 327 (765)
. ....|+++++|+++|++. ..++++|++||... +.+. .+++..++.....+|....+....+
T Consensus 260 ~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~v~v~---f~~~~~d~~e~~~~~~~~iaqe~~~--- 333 (637)
T PRK13765 260 QSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYGYEVY---MRDTMEDTPENRRKLVRFVAQEVKR--- 333 (637)
T ss_pred cccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCeEEEE---cccccCCCHHHHHHHHHHHHHHhhh---
Confidence 3 456889999999999863 56789999999732 2343 3455556666666665432221110
Q ss_pred cCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHh-CCCCC-----CChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR-GGCQG-----HRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 328 ~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~-~g~~s-----~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
.-....++++++..|++.+.+ .|.-+ .|....++|.|..+|..++++.|+.+|+.+|..
T Consensus 334 --------------~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 334 --------------DGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred --------------ccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHH
Confidence 001136888888888887654 33322 456777999999999999999999999998873
No 56
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=99.79 E-value=5e-18 Score=171.62 Aligned_cols=173 Identities=18% Similarity=0.218 Sum_probs=126.4
Q ss_pred ceEEEEEeCCCCCCchhHHHHHHHHHHHHHhh--cCCCCeEEEEEeeCCCcEEEcCCCc----cHHHHHHHhhcCC----
Q 004256 562 ALVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPSR----SIAMARKRLERLP---- 631 (765)
Q Consensus 562 ~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~--~~~~d~v~lv~F~~~~a~~~~p~t~----~~~~~~~~l~~l~---- 631 (765)
.+++||||+||||.++++..+|.++..++... +..+++++||.|++. +.+++|++. +...+...|+.+.
T Consensus 1 ~di~~vlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (198)
T cd01470 1 LNIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASD-PKEIVSIRDFNSNDADDVIKRLEDFNYDDH 79 (198)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHHHHHccccCCCceEEEEEecCC-ceEEEecccCCCCCHHHHHHHHHhCCcccc
Confidence 37899999999999999999999999998743 235899999999999 788887653 5778888898875
Q ss_pred -CCCCChhHHHHHHHHHHHHhhhcc-C---CCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHH
Q 004256 632 -CGGGSPLAHGLSMAVRVGLNAEKS-G---DVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGK 706 (765)
Q Consensus 632 -~gG~T~l~~aL~~A~~~l~~~~~~-~---~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 706 (765)
.+|+|+++.||..+.+.+...... . ...+.+|||||||.+|.+... ....+.+..+...
T Consensus 80 ~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~----------------~~~~~~~~~~~~~ 143 (198)
T cd01470 80 GDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSP----------------LPTVDKIKNLVYK 143 (198)
T ss_pred cCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCCh----------------hHHHHHHHHHHhc
Confidence 358999999999998876432211 1 112457999999999865221 1111222221111
Q ss_pred ------HHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCC--eEEEcCCCChHHHHHH
Q 004256 707 ------IYKAGMSLLVIDTENKFVSTGFAKEIARVAQG--KYYYLPNASDAVISAT 754 (765)
Q Consensus 707 ------~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG--~y~~~~~~~~~~l~~~ 754 (765)
++..++.+++||+|+.. +...|++||..+|| .+|.+.+. +.|..+
T Consensus 144 ~~~~~~~~~~~v~i~~iGvG~~~-~~~~L~~iA~~~~g~~~~f~~~~~--~~l~~v 196 (198)
T cd01470 144 NNKSDNPREDYLDVYVFGVGDDV-NKEELNDLASKKDNERHFFKLKDY--EDLQEV 196 (198)
T ss_pred ccccccchhcceeEEEEecCccc-CHHHHHHHhcCCCCCceEEEeCCH--HHHHHh
Confidence 24558999999999754 89999999999999 47777754 455544
No 57
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.79 E-value=1.8e-19 Score=179.80 Aligned_cols=203 Identities=21% Similarity=0.233 Sum_probs=127.4
Q ss_pred CCCCCCceeechHHHHHHH--Hhhh---cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccc
Q 004256 90 QFFPLAAVVGQDAIKTALL--LGAI---DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~--l~~~---~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 164 (765)
+|..|+++|||+.++..+. +.++ .....++||+||||+||||||+.|++.+.
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~----------------------- 75 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG----------------------- 75 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-----------------------
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC-----------------------
Confidence 5667899999999998873 2222 23357899999999999999999999875
Q ss_pred ccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHH
Q 004256 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (765)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~L 244 (765)
.+|........+ ..-|+..-+ + ....+-|||||||++|+..+|+.|
T Consensus 76 -------------------~~~~~~sg~~i~----k~~dl~~il-~----------~l~~~~ILFIDEIHRlnk~~qe~L 121 (233)
T PF05496_consen 76 -------------------VNFKITSGPAIE----KAGDLAAIL-T----------NLKEGDILFIDEIHRLNKAQQEIL 121 (233)
T ss_dssp ---------------------EEEEECCC------SCHHHHHHH-H----------T--TT-EEEECTCCC--HHHHHHH
T ss_pred -------------------CCeEeccchhhh----hHHHHHHHH-H----------hcCCCcEEEEechhhccHHHHHHH
Confidence 223322111110 001111100 0 012456999999999999999999
Q ss_pred HHHHHcCceEEE-eCC---eeEEee-CceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhH
Q 004256 245 LNVLTEGVNIVE-REG---ISFKHP-CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (765)
Q Consensus 245 l~~l~~~~~~v~-r~G---~~~~~p-~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~ 319 (765)
+.+|+++.+.+- -.| .+..++ ..|.+|++|+ ..|.++++|.|||++...+. .+..++...|+.+.
T Consensus 122 lpamEd~~idiiiG~g~~ar~~~~~l~~FTligATT-r~g~ls~pLrdRFgi~~~l~-~Y~~~el~~Iv~r~-------- 191 (233)
T PF05496_consen 122 LPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATT-RAGLLSSPLRDRFGIVLRLE-FYSEEELAKIVKRS-------- 191 (233)
T ss_dssp HHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEES-SGCCTSHCCCTTSSEEEE-----THHHHHHHHHHC--------
T ss_pred HHHhccCeEEEEeccccccceeeccCCCceEeeeec-cccccchhHHhhcceecchh-cCCHHHHHHHHHHH--------
Confidence 999999997542 222 223333 3699999999 77999999999999987777 47777766666421
Q ss_pred HHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Q 004256 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL 384 (765)
Q Consensus 320 ~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l 384 (765)
...-++.++++....|+..+ .. ++|-+..+++.++.+|..
T Consensus 192 ---------------------a~~l~i~i~~~~~~~Ia~rs---rG-tPRiAnrll~rvrD~a~v 231 (233)
T PF05496_consen 192 ---------------------ARILNIEIDEDAAEEIARRS---RG-TPRIANRLLRRVRDFAQV 231 (233)
T ss_dssp ---------------------CHCTT-EE-HHHHHHHHHCT---TT-SHHHHHHHHHHHCCCCCC
T ss_pred ---------------------HHHhCCCcCHHHHHHHHHhc---CC-ChHHHHHHHHHHHHHHHH
Confidence 22346899998888876443 33 589999999998866643
No 58
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.78 E-value=1.3e-17 Score=165.65 Aligned_cols=158 Identities=22% Similarity=0.318 Sum_probs=125.5
Q ss_pred CceEEEEEeCCCCCCc------hhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCC---
Q 004256 561 GALVIFVVDASGSMAL------NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLP--- 631 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~------~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~--- 631 (765)
+.+++||||+|+||.. +|+..+|.++..++. ..++++++||.|++. ..+++|++.+...+...|+.+.
T Consensus 2 ~~~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~--~~~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~l~~l~~~~ 78 (180)
T cd01467 2 GRDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFID--RRENDRIGLVVFAGA-AFTQAPLTLDRESLKELLEDIKIGL 78 (180)
T ss_pred CceEEEEEECCcccccccCCCCCHHHHHHHHHHHHHH--hCCCCeEEEEEEcCC-eeeccCCCccHHHHHHHHHHhhhcc
Confidence 5789999999999963 478999998888775 357899999999988 7888999988887777777764
Q ss_pred CCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCC
Q 004256 632 CGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAG 711 (765)
Q Consensus 632 ~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 711 (765)
.+|+|++..||..+++.+..... .+..|||+|||.+|.+.. .....++.+++.|
T Consensus 79 ~~g~T~l~~al~~a~~~l~~~~~----~~~~iiliTDG~~~~g~~----------------------~~~~~~~~~~~~g 132 (180)
T cd01467 79 AGQGTAIGDAIGLAIKRLKNSEA----KERVIVLLTDGENNAGEI----------------------DPATAAELAKNKG 132 (180)
T ss_pred cCCCCcHHHHHHHHHHHHHhcCC----CCCEEEEEeCCCCCCCCC----------------------CHHHHHHHHHHCC
Confidence 68899999999999998865322 234899999999875421 1123345566789
Q ss_pred CEEEEEeCCCC----------CCCHHHHHHHHHHcCCeEEEcCCCC
Q 004256 712 MSLLVIDTENK----------FVSTGFAKEIARVAQGKYYYLPNAS 747 (765)
Q Consensus 712 i~~~vig~~~~----------~~~~~~l~~LA~~~gG~y~~~~~~~ 747 (765)
|.+++|+++.. ..+...|++||+.+||+|+.+.+.+
T Consensus 133 i~i~~i~ig~~~~~~~~~~~~~~~~~~l~~la~~tgG~~~~~~~~~ 178 (180)
T cd01467 133 VRIYTIGVGKSGSGPKPDGSTILDEDSLVEIADKTGGRIFRALDGF 178 (180)
T ss_pred CEEEEEEecCCCCCcCCCCcccCCHHHHHHHHHhcCCEEEEecCcc
Confidence 99999998862 2467899999999999999997653
No 59
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.77 E-value=1.1e-17 Score=163.84 Aligned_cols=154 Identities=21% Similarity=0.276 Sum_probs=124.7
Q ss_pred ceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhc--CCCCeEEEEEeeCCCcEEEcCCC--ccHHHHHHHhhcCCC-CCCC
Q 004256 562 ALVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPS--RSIAMARKRLERLPC-GGGS 636 (765)
Q Consensus 562 ~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~--~~~d~v~lv~F~~~~a~~~~p~t--~~~~~~~~~l~~l~~-gG~T 636 (765)
.+++||||.||||.+.++..+|.++..++.... ..++++|||.|++. +.+.+|++ .+...+...|+.++. +|+|
T Consensus 1 ~Dvv~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~g~T 79 (164)
T cd01472 1 ADIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDD-PRTEFYLNTYRSKDDVLEAVKNLRYIGGGT 79 (164)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCc-eeEEEecCCCCCHHHHHHHHHhCcCCCCCc
Confidence 378999999999998899999998888887432 35689999999998 88889999 688999999999986 7899
Q ss_pred hhHHHHHHHHHHHHhhh-ccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEE
Q 004256 637 PLAHGLSMAVRVGLNAE-KSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLL 715 (765)
Q Consensus 637 ~l~~aL~~A~~~l~~~~-~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~ 715 (765)
+++.||..|.+.+.... ......+.+|||+|||.++.+ ....+..+++.||.++
T Consensus 80 ~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~~-------------------------~~~~~~~l~~~gv~i~ 134 (164)
T cd01472 80 NTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQDD-------------------------VEEPAVELKQAGIEVF 134 (164)
T ss_pred hHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCch-------------------------HHHHHHHHHHCCCEEE
Confidence 99999999999886532 112223568899999976521 1234456777899999
Q ss_pred EEeCCCCCCCHHHHHHHHHHcCCeEEEc
Q 004256 716 VIDTENKFVSTGFAKEIARVAQGKYYYL 743 (765)
Q Consensus 716 vig~~~~~~~~~~l~~LA~~~gG~y~~~ 743 (765)
+|+++.. +...|++||...++.|.+.
T Consensus 135 ~ig~g~~--~~~~L~~ia~~~~~~~~~~ 160 (164)
T cd01472 135 AVGVKNA--DEEELKQIASDPKELYVFN 160 (164)
T ss_pred EEECCcC--CHHHHHHHHCCCchheEEe
Confidence 9999975 7899999999999988764
No 60
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.77 E-value=1.2e-17 Score=167.21 Aligned_cols=157 Identities=18% Similarity=0.224 Sum_probs=126.9
Q ss_pred CceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhc--------CCCCeEEEEEeeCCCcEEEcCCC---ccHHHHHHHhhc
Q 004256 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESY--------TCRDQVSIIPFRGDSAEVLLPPS---RSIAMARKRLER 629 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~--------~~~d~v~lv~F~~~~a~~~~p~t---~~~~~~~~~l~~ 629 (765)
+.+++||||.|+||..+++..+|.++..++.... ...++||||.|++. +.+.+|++ .+...+.+.|+.
T Consensus 2 ~~dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~-~~~~~~l~~~~~~~~~l~~~i~~ 80 (186)
T cd01480 2 PVDITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQ-QEVEAGFLRDIRNYTSLKEAVDN 80 (186)
T ss_pred CeeEEEEEeCCCccchhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCC-ceeeEecccccCCHHHHHHHHHh
Confidence 4689999999999998888888887777776442 24689999999988 88899998 689999999999
Q ss_pred CC-CCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHH
Q 004256 630 LP-CGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIY 708 (765)
Q Consensus 630 l~-~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 708 (765)
+. .+|+|+++.||..|.+.+....+ ...+.+|||+|||.++.... .....+++.++
T Consensus 81 l~~~gg~T~~~~AL~~a~~~l~~~~~--~~~~~~iillTDG~~~~~~~---------------------~~~~~~~~~~~ 137 (186)
T cd01480 81 LEYIGGGTFTDCALKYATEQLLEGSH--QKENKFLLVITDGHSDGSPD---------------------GGIEKAVNEAD 137 (186)
T ss_pred CccCCCCccHHHHHHHHHHHHhccCC--CCCceEEEEEeCCCcCCCcc---------------------hhHHHHHHHHH
Confidence 97 58999999999999999875222 23356899999999753210 23456677788
Q ss_pred hCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEc
Q 004256 709 KAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYL 743 (765)
Q Consensus 709 ~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~ 743 (765)
+.||.+++|++|. .+...|++||...++.||.-
T Consensus 138 ~~gi~i~~vgig~--~~~~~L~~IA~~~~~~~~~~ 170 (186)
T cd01480 138 HLGIKIFFVAVGS--QNEEPLSRIACDGKSALYRE 170 (186)
T ss_pred HCCCEEEEEecCc--cchHHHHHHHcCCcchhhhc
Confidence 9999999999988 47888999999999986544
No 61
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=99.76 E-value=1.9e-17 Score=194.70 Aligned_cols=168 Identities=20% Similarity=0.250 Sum_probs=131.9
Q ss_pred CceEEEEEeCCCCCCc-hhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCc-----cHHHHHHHhhcCCCCC
Q 004256 561 GALVIFVVDASGSMAL-NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR-----SIAMARKRLERLPCGG 634 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~-~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~-----~~~~~~~~l~~l~~gG 634 (765)
...++||||+||||.+ +||..+|+++..++...+.++|+||||.|++. +.++.|++. +...+...|. +.++|
T Consensus 304 ~r~VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~~DrVGLVtFsss-A~vl~pLt~Its~~dr~aL~~~L~-~~A~G 381 (863)
T TIGR00868 304 QRIVCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEKGSWVGMVTFDSA-AYIKNELIQITSSAERDALTANLP-TAASG 381 (863)
T ss_pred CceEEEEEECCccccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEECCc-eeEeeccccCCcHHHHHHHHHhhc-cccCC
Confidence 4679999999999975 79999999999998888899999999999999 888888763 3444444443 45789
Q ss_pred CChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEE
Q 004256 635 GSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSL 714 (765)
Q Consensus 635 ~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~ 714 (765)
||+|..||..|++++.+...+. ....|||||||.+|.+ ..+++.+++.|+.+
T Consensus 382 GT~I~~GL~~Alq~L~~~~~~~--~~~~IILLTDGedn~~--------------------------~~~l~~lk~~gVtI 433 (863)
T TIGR00868 382 GTSICSGLKAAFQVIKKSYQST--DGSEIVLLTDGEDNTI--------------------------SSCFEEVKQSGAII 433 (863)
T ss_pred CCcHHHHHHHHHHHHHhccccc--CCCEEEEEeCCCCCCH--------------------------HHHHHHHHHcCCEE
Confidence 9999999999999988654322 1347999999997731 22345567789999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCC-hHHHHHHHHHHHH
Q 004256 715 LVIDTENKFVSTGFAKEIARVAQGKYYYLPNAS-DAVISATTKDALS 760 (765)
Q Consensus 715 ~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~-~~~l~~~~~~~~~ 760 (765)
++|++|... ...|++||+.+||+||++.+.. ...|.+++.+...
T Consensus 434 ~TIg~G~da--d~~L~~IA~~TGG~~f~asd~~dl~~L~dAF~~iss 478 (863)
T TIGR00868 434 HTIALGPSA--AKELEELSDMTGGLRFYASDQADNNGLIDAFGALSS 478 (863)
T ss_pred EEEEeCCCh--HHHHHHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhc
Confidence 999999763 4568999999999999998654 3467777766554
No 62
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=1.8e-17 Score=167.98 Aligned_cols=224 Identities=21% Similarity=0.234 Sum_probs=162.6
Q ss_pred CCCCCCceeechHHHHHHHHh--hh---cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccc
Q 004256 90 QFFPLAAVVGQDAIKTALLLG--AI---DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~--~~---~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 164 (765)
++..|.++|||+++|..|.+. +. +....||||+||||.||||||..|++.+.- ||
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv---------n~----------- 80 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV---------NL----------- 80 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC---------Ce-----------
Confidence 456688999999999988322 21 334678999999999999999999998752 22
Q ss_pred ccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHH
Q 004256 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (765)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~L 244 (765)
++ ..+|.+.-+. +|.+-+ + ..-.|-|||||||++|++.+-+.|
T Consensus 81 ---k~------------tsGp~leK~g-----DlaaiL-------t----------~Le~~DVLFIDEIHrl~~~vEE~L 123 (332)
T COG2255 81 ---KI------------TSGPALEKPG-----DLAAIL-------T----------NLEEGDVLFIDEIHRLSPAVEEVL 123 (332)
T ss_pred ---Ee------------cccccccChh-----hHHHHH-------h----------cCCcCCeEEEehhhhcChhHHHHh
Confidence 00 1233322111 121110 0 112356999999999999999999
Q ss_pred HHHHHcCceEEE--eCCe--eEEee-CceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhH
Q 004256 245 LNVLTEGVNIVE--REGI--SFKHP-CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (765)
Q Consensus 245 l~~l~~~~~~v~--r~G~--~~~~p-~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~ 319 (765)
..+|++..+-+- ..-. +.+++ ..|.+|++|. ..|.+..+|.|||++...+++ +..++.+.|+.+...
T Consensus 124 YpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT-r~G~lt~PLrdRFGi~~rlef-Y~~~eL~~Iv~r~a~------ 195 (332)
T COG2255 124 YPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT-RAGMLTNPLRDRFGIIQRLEF-YTVEELEEIVKRSAK------ 195 (332)
T ss_pred hhhhhheeEEEEEccCCccceEeccCCCeeEeeecc-ccccccchhHHhcCCeeeeec-CCHHHHHHHHHHHHH------
Confidence 999999875542 1112 22222 3699999999 789999999999999988885 788877777764321
Q ss_pred HHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004256 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 320 ~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
.-++.++++....|+.. ... ++|-+..++|..+..|...|...|+.+-..+|+
T Consensus 196 -----------------------~l~i~i~~~~a~eIA~r---SRG-TPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL 248 (332)
T COG2255 196 -----------------------ILGIEIDEEAALEIARR---SRG-TPRIANRLLRRVRDFAQVKGDGDIDRDIADKAL 248 (332)
T ss_pred -----------------------HhCCCCChHHHHHHHHh---ccC-CcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 12578888877666543 333 699999999999999999999999999999998
Q ss_pred HHhcCC
Q 004256 400 ELVILP 405 (765)
Q Consensus 400 ~lvl~h 405 (765)
.+-...
T Consensus 249 ~~L~Vd 254 (332)
T COG2255 249 KMLDVD 254 (332)
T ss_pred HHhCcc
Confidence 875444
No 63
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=99.75 E-value=8.1e-17 Score=160.97 Aligned_cols=175 Identities=19% Similarity=0.171 Sum_probs=123.3
Q ss_pred CCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHH---hhcCCCCCCC
Q 004256 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKR---LERLPCGGGS 636 (765)
Q Consensus 560 ~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~---l~~l~~gG~T 636 (765)
.+.+++||||.||||.+... ..+..+..++.....++++||||.|+++ +.+++|++.....+.+. |..+.++|+|
T Consensus 3 ~~~Dvv~llD~SgSm~~~~~-~~~~~~~~l~~~~~~~~~rvglv~Fs~~-~~~~~~l~~~~~~~~~~l~~l~~~~~~g~T 80 (185)
T cd01474 3 GHFDLYFVLDKSGSVAANWI-EIYDFVEQLVDRFNSPGLRFSFITFSTR-ATKILPLTDDSSAIIKGLEVLKKVTPSGQT 80 (185)
T ss_pred CceeEEEEEeCcCchhhhHH-HHHHHHHHHHHHcCCCCcEEEEEEecCC-ceEEEeccccHHHHHHHHHHHhccCCCCCC
Confidence 36899999999999986432 2334566666544557899999999998 89999999865555554 5667788999
Q ss_pred hhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEE
Q 004256 637 PLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLV 716 (765)
Q Consensus 637 ~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~v 716 (765)
+++.||..|.+.+......+.....+|||+|||.++.... ......++.+++.|+.+++
T Consensus 81 ~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~---------------------~~~~~~a~~l~~~gv~i~~ 139 (185)
T cd01474 81 YIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGH---------------------KYPEHEAKLSRKLGAIVYC 139 (185)
T ss_pred cHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCC---------------------cchHHHHHHHHHcCCEEEE
Confidence 9999999999887543222222236899999999842100 1124456678889999999
Q ss_pred EeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHHHHHh
Q 004256 717 IDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDALSA 761 (765)
Q Consensus 717 ig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~~~~~ 761 (765)
||+++ ++...|+.||...+..|+...+ -+.|..++......
T Consensus 140 vgv~~--~~~~~L~~iA~~~~~~f~~~~~--~~~l~~~~~~~~~~ 180 (185)
T cd01474 140 VGVTD--FLKSQLINIADSKEYVFPVTSG--FQALSGIIESVVKK 180 (185)
T ss_pred Eeech--hhHHHHHHHhCCCCeeEecCcc--HHHHHHHHHHHHHh
Confidence 99943 4788999999877543334443 34666766665543
No 64
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=99.74 E-value=1.3e-17 Score=163.18 Aligned_cols=163 Identities=27% Similarity=0.416 Sum_probs=127.9
Q ss_pred eEEEEEeCCCCCCc-----hhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCC----CC
Q 004256 563 LVIFVVDASGSMAL-----NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLP----CG 633 (765)
Q Consensus 563 ~vv~vvD~SgSM~~-----~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~----~g 633 (765)
+++||||.||||.. +++..+|.++..++.. + ++++|+|+.|++. ..+..|+|.+...++..+..+. ++
T Consensus 1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~l~~f~~~-~~~~~~~t~~~~~~~~~l~~~~~~~~~~ 77 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYDGNRTRIDQAKDALNELLAN-L-PGDRVGLVSFSDS-SRTLSPLTSDKDELKNALNKLSPQGMPG 77 (172)
T ss_dssp EEEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHH-H-TTSEEEEEEESTS-CEEEEEEESSHHHHHHHHHTHHHHG--S
T ss_pred CEEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHH-C-CCCEEEEEEeccc-ccccccccccHHHHHHHhhcccccccCc
Confidence 58999999999975 4899999999999985 4 5889999999998 7889999999999999999775 47
Q ss_pred CCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCE
Q 004256 634 GGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMS 713 (765)
Q Consensus 634 G~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~ 713 (765)
|+|++..||..|.+++.... ..+..|||||||.++. ...+.++.+++.+|.
T Consensus 78 ~~t~~~~al~~a~~~~~~~~----~~~~~iv~iTDG~~~~-------------------------~~~~~~~~~~~~~i~ 128 (172)
T PF13519_consen 78 GGTNLYDALQEAAKMLASSD----NRRRAIVLITDGEDNS-------------------------SDIEAAKALKQQGIT 128 (172)
T ss_dssp SS--HHHHHHHHHHHHHC-S----SEEEEEEEEES-TTHC-------------------------HHHHHHHHHHCTTEE
T ss_pred cCCcHHHHHHHHHHHHHhCC----CCceEEEEecCCCCCc-------------------------chhHHHHHHHHcCCe
Confidence 89999999999999987543 2355899999998661 223477778899999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHHH
Q 004256 714 LLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDA 758 (765)
Q Consensus 714 ~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~~ 758 (765)
+++|+++........+++||+.+||.|+.+.. +.+.|..+++++
T Consensus 129 i~~v~~~~~~~~~~~l~~la~~tgG~~~~~~~-~~~~l~~~~~~I 172 (172)
T PF13519_consen 129 IYTVGIGSDSDANEFLQRLAEATGGRYFHVDN-DPEDLDDAFQQI 172 (172)
T ss_dssp EEEEEES-TT-EHHHHHHHHHHTEEEEEEE-S-SSHHHHHHHHH-
T ss_pred EEEEEECCCccHHHHHHHHHHhcCCEEEEecC-CHHHHHHHHhcC
Confidence 99999997653457999999999999999942 347788887763
No 65
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.74 E-value=4.6e-17 Score=190.04 Aligned_cols=243 Identities=23% Similarity=0.247 Sum_probs=157.0
Q ss_pred CCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccc
Q 004256 90 QFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (765)
++..|++|+|+++.++++.....++...+|+|+||+|||||++||.+|..+.... +.++.
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~---~~~~~----------------- 208 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLK---HTPFA----------------- 208 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhcc---CCccc-----------------
Confidence 4678999999999999885444556677899999999999999999998764210 00000
Q ss_pred cccccCcccccccCCCeEeCCCCCc-------ccceeeecccc------c-ccccCCCcccCCceeeccCCeEecccccc
Q 004256 170 EYDTAGNLKTQIARSPFVQIPLGVT-------EDRLIGSVDVE------E-SVKTGTTVFQPGLLAEAHRGVLYIDEINL 235 (765)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~l~~~~~-------e~~L~G~~d~e------~-~~~~g~~~~~~Gll~~A~~GiL~lDEi~~ 235 (765)
...+|+.+++... ...++|.+.-. + -.+.|.....+|++..+++|+|||||++.
T Consensus 209 ------------~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~ 276 (615)
T TIGR02903 209 ------------EDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGE 276 (615)
T ss_pred ------------CCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEecccc
Confidence 1345555544321 11234432100 0 01234445678999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCceEEEeCCe---------------eEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCC
Q 004256 236 LDEGISNLLLNVLTEGVNIVEREGI---------------SFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMT 300 (765)
Q Consensus 236 L~~~~q~~Ll~~l~~~~~~v~r~G~---------------~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~ 300 (765)
|+...|..|+.+|+++.+.+...-. ....+.+|++|++++.....+.++|.+||..+ .+. |..
T Consensus 277 Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i-~~~-pls 354 (615)
T TIGR02903 277 LDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEV-FFE-PLT 354 (615)
T ss_pred CCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEE-EeC-CCC
Confidence 9999999999999998855432110 11246678999988777778899999999754 443 555
Q ss_pred HhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Q 004256 301 FEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKC 380 (765)
Q Consensus 301 ~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a 380 (765)
.++..+|+. .+... .++.+++++++.|..+++. .|..++++..+..
T Consensus 355 ~edi~~Il~---~~a~~--------------------------~~v~ls~eal~~L~~ys~~-----gRraln~L~~~~~ 400 (615)
T TIGR02903 355 PEDIALIVL---NAAEK--------------------------INVHLAAGVEELIARYTIE-----GRKAVNILADVYG 400 (615)
T ss_pred HHHHHHHHH---HHHHH--------------------------cCCCCCHHHHHHHHHCCCc-----HHHHHHHHHHHHH
Confidence 444444443 32211 0245666666666655432 2555666655544
Q ss_pred HHHHc--------CCCCCCHHHHHHHHH
Q 004256 381 LAALE--------GREKVNVDDLKKAVE 400 (765)
Q Consensus 381 ~A~l~--------gr~~Vt~edv~~A~~ 400 (765)
.+... +...|+.+||++++.
T Consensus 401 ~~~~~~~~~~~~~~~~~I~~edv~~~l~ 428 (615)
T TIGR02903 401 YALYRAAEAGKENDKVTITQDDVYEVIQ 428 (615)
T ss_pred HHHHHHHHhccCCCCeeECHHHHHHHhC
Confidence 43211 223789999998885
No 66
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.72 E-value=7.9e-18 Score=167.83 Aligned_cols=265 Identities=23% Similarity=0.283 Sum_probs=168.8
Q ss_pred HhcCCCcccccCCCCccccCCCCccHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCceeechHHHHHH-HHh
Q 004256 32 LKLHPLLFSYSPPPFFKFRTRPKHHRFFHVRASSSNATLDSANGAVAAASEDQDSYGRQFFPLAAVVGQDAIKTAL-LLG 110 (765)
Q Consensus 32 ~~~g~~~~d~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ivG~~~~~~aL-~l~ 110 (765)
.+.|...||--+=|-+.+..-.+.|-..-+......-.++......... .....|+++|||+.+|+.. ++.
T Consensus 66 v~eg~ylFD~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~~~~~~~~e~--------~~~it~ddViGqEeAK~kcrli~ 137 (368)
T COG1223 66 VREGDYLFDTRMFPDYAFKVIRVVPSGGGIITSTTIFVLETPREEDREI--------ISDITLDDVIGQEEAKRKCRLIM 137 (368)
T ss_pred eecCceEeecccccccceeEEEEeCCCCceecceEEEEecCcchhhhhh--------hccccHhhhhchHHHHHHHHHHH
Confidence 4567667777777776666544444111111111111111111111111 2235688999999999987 222
Q ss_pred hh--cC------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCccccccc
Q 004256 111 AI--DR------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIA 182 (765)
Q Consensus 111 ~~--~~------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (765)
.. +| ...+||++||||||||++||+++...
T Consensus 138 ~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~------------------------------------------ 175 (368)
T COG1223 138 EYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA------------------------------------------ 175 (368)
T ss_pred HHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc------------------------------------------
Confidence 21 22 34679999999999999999999753
Q ss_pred CCCeEeCCCCCcccceeeecccccccccCCCcccCCce---eeccCCeEeccccccCCH------------HHHHHHHHH
Q 004256 183 RSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLL---AEAHRGVLYIDEINLLDE------------GISNLLLNV 247 (765)
Q Consensus 183 ~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll---~~A~~GiL~lDEi~~L~~------------~~q~~Ll~~ 247 (765)
+.||+.+.......+.+|. |.... .-+. .++..+|+||||++.+.. +++++||.-
T Consensus 176 kvp~l~vkat~liGehVGd---------gar~I-hely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTe 245 (368)
T COG1223 176 KVPLLLVKATELIGEHVGD---------GARRI-HELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTE 245 (368)
T ss_pred CCceEEechHHHHHHHhhh---------HHHHH-HHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHh
Confidence 5677765544333333331 21110 0111 233467999999998743 578899988
Q ss_pred HHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccc
Q 004256 248 LTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (765)
Q Consensus 248 l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~ 327 (765)
|+. . .+++| ++.||+|| ....|++++.+||...+++.+| ..++|.+|++. +
T Consensus 246 lDg-i--~eneG--------VvtIaaTN-~p~~LD~aiRsRFEeEIEF~LP-~~eEr~~ile~---y------------- 296 (368)
T COG1223 246 LDG-I--KENEG--------VVTIAATN-RPELLDPAIRSRFEEEIEFKLP-NDEERLEILEY---Y------------- 296 (368)
T ss_pred ccC-c--ccCCc--------eEEEeecC-ChhhcCHHHHhhhhheeeeeCC-ChHHHHHHHHH---H-------------
Confidence 853 3 24444 67899999 6778899999999998899876 56666677652 1
Q ss_pred cCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChH-HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 004256 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAE-LYAARVAKCLAALEGREKVNVDDLKKAVELV 402 (765)
Q Consensus 328 ~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~-i~llr~A~a~A~l~gr~~Vt~edv~~A~~lv 402 (765)
+..+|-.|... +++++. ..+..|+|.. ..+++.|.--|..+|++.|+.+|++.|++--
T Consensus 297 -----------~k~~Plpv~~~---~~~~~~---~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k~ 355 (368)
T COG1223 297 -----------AKKFPLPVDAD---LRYLAA---KTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKKE 355 (368)
T ss_pred -----------HHhCCCccccC---HHHHHH---HhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhh
Confidence 22334334443 445543 3344478874 5689999999999999999999999999873
No 67
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=99.72 E-value=1.5e-16 Score=176.83 Aligned_cols=258 Identities=21% Similarity=0.253 Sum_probs=178.0
Q ss_pred ceeechHHHHHHHHhhhcCC------------CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccc
Q 004256 96 AVVGQDAIKTALLLGAIDRE------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (765)
Q Consensus 96 ~ivG~~~~~~aL~l~~~~~~------------~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 163 (765)
.|.|.+.+|+.|++.++... .-+|||+|.||||||.+.+++|+++||-.
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~------------------- 490 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGV------------------- 490 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcce-------------------
Confidence 58999999999988877321 24699999999999999999999999611
Q ss_pred cccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
||. |+ +.+...|.-++ .+.-.++....+-|.|..+++|+.+|||+|.|++..++.
T Consensus 491 -------yTS-Gk---------------GsSavGLTayV--trd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSv 545 (804)
T KOG0478|consen 491 -------YTS-GK---------------GSSAVGLTAYV--TKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSV 545 (804)
T ss_pred -------eec-CC---------------ccchhcceeeE--EecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHH
Confidence 110 10 11111222221 233445667778899999999999999999999999999
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC------------CcchHHHhhhhcceeecCCCCHhhHHHHHHHH
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg------------~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~ 311 (765)
|+++|+...+.|...|+-...+++.-|||+.||-++ .+++.|+.||+++.-+-.+ .+++.|- .++
T Consensus 546 LhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~--~DE~~Dr-~La 622 (804)
T KOG0478|consen 546 LHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDK--PDERSDR-RLA 622 (804)
T ss_pred HHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecC--cchhHHH-HHH
Confidence 999999999999999999999999999999998443 4789999999997433322 3333221 223
Q ss_pred HHHHHhhHHHhc-cccccCcH--HHHHHHHHhcccCCccCCHHHHHHHHHHHHhC-------C--CCCCChHHHHHHHHH
Q 004256 312 TQFQERSNEVFK-MVEEETDL--AKTQIILAREYLKDVAIGREQLKYLVMEALRG-------G--CQGHRAELYAARVAK 379 (765)
Q Consensus 312 ~~~~~~~~~~~~-~~~~~~~~--~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~-------g--~~s~Ra~i~llr~A~ 379 (765)
.|....+.+--. ......+. +...+..|+. +-...+++++.+.+....... | ....|.+..++|.+.
T Consensus 623 ~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk-~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsE 701 (804)
T KOG0478|consen 623 DHIVALYPETGEKQGSEAIDMNLLRDYIRYARK-NIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSE 701 (804)
T ss_pred HHHHHhcccccccchhHHHhHHHHHHHHHHHhc-cCCccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHHHH
Confidence 333222111000 00111111 2222223332 122467777777666543221 2 235688999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHH
Q 004256 380 CLAALEGREKVNVDDLKKAVEL 401 (765)
Q Consensus 380 a~A~l~gr~~Vt~edv~~A~~l 401 (765)
++|.....+.|...||++|+.+
T Consensus 702 ahak~r~s~~ve~~dV~eA~~l 723 (804)
T KOG0478|consen 702 AHAKMRLSNRVEEIDVEEAVRL 723 (804)
T ss_pred HHHHhhcccccchhhHHHHHHH
Confidence 9999999999999999999876
No 68
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.71 E-value=2.7e-16 Score=155.91 Aligned_cols=147 Identities=20% Similarity=0.224 Sum_probs=111.3
Q ss_pred CceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcC-----CCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCC
Q 004256 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYT-----CRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGG 635 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~-----~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~gG~ 635 (765)
..+|+||||+||||.+.++..+|.++..++..... ++++|+||.|++. +++++|++.... ..+..+..+|+
T Consensus 3 ~~~v~~llD~SgSM~~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~-a~~~~~l~~~~~---~~~~~l~~~Gg 78 (176)
T cd01464 3 RLPIYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSA-ARVIVPLTPLES---FQPPRLTASGG 78 (176)
T ss_pred CCCEEEEEECCCCCCChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCC-ceEecCCccHHh---cCCCcccCCCC
Confidence 36799999999999999999999888888764322 4679999999998 899999886322 23556788999
Q ss_pred ChhHHHHHHHHHHHHhhhcc-----CCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhC
Q 004256 636 SPLAHGLSMAVRVGLNAEKS-----GDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKA 710 (765)
Q Consensus 636 T~l~~aL~~A~~~l~~~~~~-----~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 710 (765)
|+++.||..|.+.+...... ....+++|||+|||.+|... ....+..+.+...
T Consensus 79 T~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~----------------------~~~~~~~~~~~~~ 136 (176)
T cd01464 79 TSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDL----------------------TAAIERIKEARDS 136 (176)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchH----------------------HHHHHHHHhhccc
Confidence 99999999999998654321 11224689999999986321 2223455556666
Q ss_pred CCEEEEEeCCCCCCCHHHHHHHHH
Q 004256 711 GMSLLVIDTENKFVSTGFAKEIAR 734 (765)
Q Consensus 711 gi~~~vig~~~~~~~~~~l~~LA~ 734 (765)
++.+++||+|.+ ++.++|++||.
T Consensus 137 ~~~i~~igiG~~-~~~~~L~~ia~ 159 (176)
T cd01464 137 KGRIVACAVGPK-ADLDTLKQITE 159 (176)
T ss_pred CCcEEEEEeccc-cCHHHHHHHHC
Confidence 899999999984 48888888884
No 69
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.71 E-value=4.3e-16 Score=152.64 Aligned_cols=155 Identities=15% Similarity=0.205 Sum_probs=121.3
Q ss_pred ceEEEEEeCCCCCCchhHHHHHHHHHHHHHhh--cCCCCeEEEEEeeCCCcEEEcCCC--ccHHHHHHHhhcCC-CCCCC
Q 004256 562 ALVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPS--RSIAMARKRLERLP-CGGGS 636 (765)
Q Consensus 562 ~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~--~~~~d~v~lv~F~~~~a~~~~p~t--~~~~~~~~~l~~l~-~gG~T 636 (765)
.+++||||.|+||....+..+|.++..++... ..++++||||.|++. +.+.+|++ .+...+.+.|..++ .+|+|
T Consensus 1 ~Dv~~vlD~S~Sm~~~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~-~~~~~~l~~~~~~~~l~~~l~~~~~~~g~T 79 (164)
T cd01482 1 ADIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDD-PRTEFDLNAYTSKEDVLAAIKNLPYKGGNT 79 (164)
T ss_pred CCEEEEEeCCCCcChhhHHHHHHHHHHHHhheeeCCCceEEEEEEECCC-eeEEEecCCCCCHHHHHHHHHhCcCCCCCC
Confidence 36899999999998888999999888888632 346799999999999 88888887 47788888898887 78899
Q ss_pred hhHHHHHHHHHHHHhh-hccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEE
Q 004256 637 PLAHGLSMAVRVGLNA-EKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLL 715 (765)
Q Consensus 637 ~l~~aL~~A~~~l~~~-~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~ 715 (765)
+++.||..+.+.+.+. .......+.+|||+|||.+|. ++..+++.+++.||.++
T Consensus 80 ~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~-------------------------~~~~~a~~lk~~gi~i~ 134 (164)
T cd01482 80 RTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQD-------------------------DVELPARVLRNLGVNVF 134 (164)
T ss_pred hHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCc-------------------------hHHHHHHHHHHCCCEEE
Confidence 9999999988765432 111222356899999999762 23566788889999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHcCC-eEEEcC
Q 004256 716 VIDTENKFVSTGFAKEIARVAQG-KYYYLP 744 (765)
Q Consensus 716 vig~~~~~~~~~~l~~LA~~~gG-~y~~~~ 744 (765)
+|+++.. +...|++||..... .+|.+.
T Consensus 135 ~ig~g~~--~~~~L~~ia~~~~~~~~~~~~ 162 (164)
T cd01482 135 AVGVKDA--DESELKMIASKPSETHVFNVA 162 (164)
T ss_pred EEecCcC--CHHHHHHHhCCCchheEEEcC
Confidence 9999873 58889999988654 444443
No 70
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.70 E-value=3.8e-17 Score=149.25 Aligned_cols=124 Identities=29% Similarity=0.389 Sum_probs=84.2
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeE--eCCCCCcc
Q 004256 118 GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFV--QIPLGVTE 195 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~l~~~~~e 195 (765)
||||.|.||+|||++|+++++.+.. .|. .....+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~------------------------------------------~f~RIq~tpdllP 38 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGL------------------------------------------SFKRIQFTPDLLP 38 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--------------------------------------------EEEEE--TT--H
T ss_pred CEeeECCCccHHHHHHHHHHHHcCC------------------------------------------ceeEEEecCCCCc
Confidence 7999999999999999999998752 232 34455777
Q ss_pred cceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeec
Q 004256 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYN 275 (765)
Q Consensus 196 ~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N 275 (765)
.+++|.--+. ..++...+.+|.+. .+++++||||+.++.+|++||++|+++. |.-+|..+..|..|.||||+|
T Consensus 39 sDi~G~~v~~--~~~~~f~~~~GPif---~~ill~DEiNrappktQsAlLeam~Er~--Vt~~g~~~~lp~pf~ViATqN 111 (131)
T PF07726_consen 39 SDILGFPVYD--QETGEFEFRPGPIF---TNILLADEINRAPPKTQSALLEAMEERQ--VTIDGQTYPLPDPFFVIATQN 111 (131)
T ss_dssp HHHHEEEEEE--TTTTEEEEEE-TT----SSEEEEETGGGS-HHHHHHHHHHHHHSE--EEETTEEEE--SS-EEEEEE-
T ss_pred ccceeeeeec--cCCCeeEeecChhh---hceeeecccccCCHHHHHHHHHHHHcCe--EEeCCEEEECCCcEEEEEecC
Confidence 8888863211 12255566777775 4799999999999999999999999999 666799999999999999999
Q ss_pred CCC----CCcchHHHhhhh
Q 004256 276 PEE----GVVREHLLDRIA 290 (765)
Q Consensus 276 ~~e----g~l~~~L~dRf~ 290 (765)
|.+ ..++++++|||-
T Consensus 112 p~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 112 PVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp TT--S------HHHHTTSS
T ss_pred ccccCceecCCHHHhcccc
Confidence 954 268899999995
No 71
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=99.70 E-value=8.8e-16 Score=180.12 Aligned_cols=173 Identities=24% Similarity=0.353 Sum_probs=130.5
Q ss_pred ccCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCc-----cHHHHHHHhhcCCC
Q 004256 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR-----SIAMARKRLERLPC 632 (765)
Q Consensus 558 ~~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~-----~~~~~~~~l~~l~~ 632 (765)
+..+.+++||||+||||.+.+|..+|.++..++. .+.++|+|+||.|++. +..+.|.+. +...+..+|+.+.+
T Consensus 268 ~~~p~~vvfvlD~SgSM~g~~i~~ak~al~~~l~-~L~~~d~~~ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~l~a 345 (596)
T TIGR03788 268 QVLPRELVFVIDTSGSMAGESIEQAKSALLLALD-QLRPGDRFNIIQFDSD-VTLLFPVPVPATAHNLARARQFVAGLQA 345 (596)
T ss_pred cCCCceEEEEEECCCCCCCccHHHHHHHHHHHHH-hCCCCCEEEEEEECCc-ceEeccccccCCHHHHHHHHHHHhhCCC
Confidence 3456899999999999999999999997776665 6789999999999998 777666432 56778889999999
Q ss_pred CCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCC
Q 004256 633 GGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGM 712 (765)
Q Consensus 633 gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi 712 (765)
+|||++..||..|++.... ........|||||||..+. ..++.+..+. ...++
T Consensus 346 ~GgT~l~~aL~~a~~~~~~---~~~~~~~~iillTDG~~~~-----------------------~~~~~~~~~~-~~~~~ 398 (596)
T TIGR03788 346 DGGTEMAGALSAALRDDGP---ESSGALRQVVFLTDGAVGN-----------------------EDALFQLIRT-KLGDS 398 (596)
T ss_pred CCCccHHHHHHHHHHhhcc---cCCCceeEEEEEeCCCCCC-----------------------HHHHHHHHHH-hcCCc
Confidence 9999999999999876321 1112234689999997421 0233333332 23468
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHHHHHhh
Q 004256 713 SLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDALSAL 762 (765)
Q Consensus 713 ~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~~~~~~ 762 (765)
++++||+|... +..+|+.||+.+||.|+++.+. +.+...+...+..+
T Consensus 399 ri~tvGiG~~~-n~~lL~~lA~~g~G~~~~i~~~--~~~~~~~~~~l~~~ 445 (596)
T TIGR03788 399 RLFTVGIGSAP-NSYFMRKAAQFGRGSFTFIGST--DEVQRKMSQLFAKL 445 (596)
T ss_pred eEEEEEeCCCc-CHHHHHHHHHcCCCEEEECCCH--HHHHHHHHHHHHhh
Confidence 99999999854 7899999999999999999864 45555555555443
No 72
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.70 E-value=3.4e-16 Score=166.36 Aligned_cols=220 Identities=22% Similarity=0.247 Sum_probs=146.8
Q ss_pred HHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccc
Q 004256 102 AIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQI 181 (765)
Q Consensus 102 ~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (765)
+..++++.+.. ..++|||.|+||||||++++.|+..+.
T Consensus 52 ~~~~~vl~~l~--~~~~ilL~G~pGtGKTtla~~lA~~l~---------------------------------------- 89 (327)
T TIGR01650 52 ATTKAICAGFA--YDRRVMVQGYHGTGKSTHIEQIAARLN---------------------------------------- 89 (327)
T ss_pred HHHHHHHHHHh--cCCcEEEEeCCCChHHHHHHHHHHHHC----------------------------------------
Confidence 34444544433 367899999999999999999999875
Q ss_pred cCCCeEe--CCCCCcccceeeecccccccccCC--CcccCCceeec--cCCeEeccccccCCHHHHHHHHHHHH-cCceE
Q 004256 182 ARSPFVQ--IPLGVTEDRLIGSVDVEESVKTGT--TVFQPGLLAEA--HRGVLYIDEINLLDEGISNLLLNVLT-EGVNI 254 (765)
Q Consensus 182 ~~~~~v~--l~~~~~e~~L~G~~d~e~~~~~g~--~~~~~Gll~~A--~~GiL~lDEi~~L~~~~q~~Ll~~l~-~~~~~ 254 (765)
.+|+. ++..++..+++|..-+ .+..|. ..+++|.|..| +|++|++||||+++++++..|..+|+ ++.++
T Consensus 90 --~~~~rV~~~~~l~~~DliG~~~~--~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~ 165 (327)
T TIGR01650 90 --WPCVRVNLDSHVSRIDLVGKDAI--VLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLT 165 (327)
T ss_pred --CCeEEEEecCCCChhhcCCCcee--eccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEE
Confidence 23333 4455666778885211 112333 46788988775 67789999999999999999999999 46766
Q ss_pred EEeCCeeEEeeCceEEEEeecCCC---------C--CcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhc
Q 004256 255 VEREGISFKHPCKPLLIATYNPEE---------G--VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (765)
Q Consensus 255 v~r~G~~~~~p~~~~lIat~N~~e---------g--~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~ 323 (765)
+...+........|++|||+||.+ | .+.++++|||.+.+.+.+| +.+...+|+.....
T Consensus 166 i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp-~~e~E~~Il~~~~~---------- 234 (327)
T TIGR01650 166 LLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYL-EHDNEAAIVLAKAK---------- 234 (327)
T ss_pred ECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCC-CHHHHHHHHHhhcc----------
Confidence 654444443334899999999943 1 4789999999987678875 55655566542100
Q ss_pred cccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhC----------CCCCCChHHHHHHHHHHHHHHcCCCCCCHH
Q 004256 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG----------GCQGHRAELYAARVAKCLAALEGREKVNVD 393 (765)
Q Consensus 324 ~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~----------g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~e 393 (765)
. +.. ..++++++++++++... ...|.|..+.+.+.+... + .
T Consensus 235 -----------------~-~~~-~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~~f----~------~ 285 (327)
T TIGR01650 235 -----------------G-FDD-TEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAEIF----D------H 285 (327)
T ss_pred -----------------C-CCc-cchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHHhh----C------c
Confidence 0 000 01334444444443211 123889999988876643 2 3
Q ss_pred HHHHHHHHhcCCCc
Q 004256 394 DLKKAVELVILPRS 407 (765)
Q Consensus 394 dv~~A~~lvl~hR~ 407 (765)
++..|+.+.+..|.
T Consensus 286 ~~~~a~~~~~~n~~ 299 (327)
T TIGR01650 286 DIALAFRLTFLNKC 299 (327)
T ss_pred cHHHHHHHHHHhcC
Confidence 68888888888875
No 73
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=99.69 E-value=1e-15 Score=153.42 Aligned_cols=160 Identities=14% Similarity=0.234 Sum_probs=122.4
Q ss_pred cCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhc--------CCCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhh
Q 004256 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAESY--------TCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLE 628 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~--------~~~d~v~lv~F~~~~a~~~~p~t~--~~~~~~~~l~ 628 (765)
..+.+||||||.|+||...+++.+|..+..++...- ...+|||||.|++. +.+.+|++. +...+...|+
T Consensus 17 ~~~~DivfvlD~S~Sm~~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~-a~~~~~L~d~~~~~~~~~ai~ 95 (193)
T cd01477 17 NLWLDIVFVVDNSKGMTQGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSN-ATVVADLNDLQSFDDLYSQIQ 95 (193)
T ss_pred cceeeEEEEEeCCCCcchhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCc-eEEEEecccccCHHHHHHHHH
Confidence 357999999999999988889999998888766332 23579999999999 999999985 5566666666
Q ss_pred ----cCCCCCCChhHHHHHHHHHHHHhh-hccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHH
Q 004256 629 ----RLPCGGGSPLAHGLSMAVRVGLNA-EKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEV 703 (765)
Q Consensus 629 ----~l~~gG~T~l~~aL~~A~~~l~~~-~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (765)
.+..+|+|++..||..|.+++... .........+|||||||..+.+. .+....
T Consensus 96 ~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~----------------------~~~~~~ 153 (193)
T cd01477 96 GSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGS----------------------NDPRPI 153 (193)
T ss_pred HHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCC----------------------CCHHHH
Confidence 344678999999999999998753 11111224479999999765321 123567
Q ss_pred HHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEE
Q 004256 704 AGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYY 742 (765)
Q Consensus 704 a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~ 742 (765)
++++++.||.+++||+|.+. +...+++|++.....|++
T Consensus 154 a~~l~~~GI~i~tVGiG~~~-d~~~~~~L~~ias~~~~~ 191 (193)
T cd01477 154 AARLKSTGIAIITVAFTQDE-SSNLLDKLGKIASPGMNF 191 (193)
T ss_pred HHHHHHCCCEEEEEEeCCCC-CHHHHHHHHHhcCCCCCC
Confidence 88899999999999999854 667799999988776653
No 74
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=99.69 E-value=5.1e-16 Score=150.50 Aligned_cols=148 Identities=25% Similarity=0.356 Sum_probs=116.8
Q ss_pred ceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCC-----ccHHHHHHHhhcCCC-CCC
Q 004256 562 ALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPS-----RSIAMARKRLERLPC-GGG 635 (765)
Q Consensus 562 ~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t-----~~~~~~~~~l~~l~~-gG~ 635 (765)
.+|+||||+|+||.+.+ ..+|.++..++. .+.++|+|.||.|++. +..+.|-. .+...+..+|..+.+ .|+
T Consensus 1 ~~vvilvD~S~Sm~g~~-~~~k~al~~~l~-~L~~~d~fnii~f~~~-~~~~~~~~~~~~~~~~~~a~~~I~~~~~~~G~ 77 (155)
T PF13768_consen 1 ADVVILVDTSGSMSGEK-ELVKDALRAILR-SLPPGDRFNIIAFGSS-VRPLFPGLVPATEENRQEALQWIKSLEANSGG 77 (155)
T ss_pred CeEEEEEeCCCCCCCcH-HHHHHHHHHHHH-hCCCCCEEEEEEeCCE-eeEcchhHHHHhHHHHHHHHHHHHHhcccCCC
Confidence 36899999999999887 889988877775 6899999999999998 66555442 367788999999998 999
Q ss_pred ChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEE
Q 004256 636 SPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLL 715 (765)
Q Consensus 636 T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~ 715 (765)
|++..+|..|+..+. .......|||+|||.++.+ .+++...++... ..++++
T Consensus 78 t~l~~aL~~a~~~~~-----~~~~~~~IilltDG~~~~~----------------------~~~i~~~v~~~~-~~~~i~ 129 (155)
T PF13768_consen 78 TDLLAALRAALALLQ-----RPGCVRAIILLTDGQPVSG----------------------EEEILDLVRRAR-GHIRIF 129 (155)
T ss_pred ccHHHHHHHHHHhcc-----cCCCccEEEEEEeccCCCC----------------------HHHHHHHHHhcC-CCceEE
Confidence 999999999987751 1122447999999997321 134555555422 569999
Q ss_pred EEeCCCCCCCHHHHHHHHHHcCCeEE
Q 004256 716 VIDTENKFVSTGFAKEIARVAQGKYY 741 (765)
Q Consensus 716 vig~~~~~~~~~~l~~LA~~~gG~y~ 741 (765)
++++|... +..+|++||+.++|.|.
T Consensus 130 ~~~~g~~~-~~~~L~~LA~~~~G~~~ 154 (155)
T PF13768_consen 130 TFGIGSDA-DADFLRELARATGGSFH 154 (155)
T ss_pred EEEECChh-HHHHHHHHHHcCCCEEE
Confidence 99999854 78999999999999996
No 75
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.68 E-value=3.7e-17 Score=165.33 Aligned_cols=156 Identities=25% Similarity=0.306 Sum_probs=134.1
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCc
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~ 194 (765)
+..|+|+.||+|.|||.|||.|..+-.. +.. -.++||.++|...
T Consensus 207 sr~p~ll~gptgagksflarriyelk~a-------------------------rhq-----------~sg~fvevncatl 250 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQA-------------------------RHQ-----------FSGAFVEVNCATL 250 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHHH-------------------------HHh-----------cCCceEEEeeeee
Confidence 5689999999999999999999876321 000 2568888777643
Q ss_pred -----ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceE
Q 004256 195 -----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPL 269 (765)
Q Consensus 195 -----e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~ 269 (765)
-+.|||++ ++.|+|....+.|+|-.|+||.||||||..|..+-|..||.++++.. +...|.......+|.
T Consensus 251 rgd~amsalfghv---kgaftga~~~r~gllrsadggmlfldeigelgadeqamllkaieekr--f~pfgsdr~v~sdfq 325 (531)
T COG4650 251 RGDTAMSALFGHV---KGAFTGARESREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKR--FYPFGSDRQVSSDFQ 325 (531)
T ss_pred cCchHHHHHHhhh---ccccccchhhhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhc--cCCCCCccccccchH
Confidence 34789997 99999999999999999999999999999999999999999999998 778898888899999
Q ss_pred EEEeecC------CCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHH
Q 004256 270 LIATYNP------EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIAT 312 (765)
Q Consensus 270 lIat~N~------~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~ 312 (765)
+|+.+-. .+|.|+++||-|+++. ++++|-++.+++||..-..
T Consensus 326 liagtvrdlrq~vaeg~fredl~arinlw-tf~lpgl~qr~ediepnld 373 (531)
T COG4650 326 LIAGTVRDLRQLVAEGKFREDLYARINLW-TFTLPGLRQRQEDIEPNLD 373 (531)
T ss_pred HhhhhHHHHHHHHhccchHHHHHHhhhee-eeeccccccCccccCCCcc
Confidence 9998876 4799999999999998 7899999999999965443
No 76
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.68 E-value=1.3e-15 Score=166.02 Aligned_cols=222 Identities=18% Similarity=0.165 Sum_probs=153.3
Q ss_pred CCCCCCCceeechHHHHHHHHhhh-----cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAI-----DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~-----~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 163 (765)
.++..|++++|++..+..+..... .....++||+||||||||++|+++++.+..
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~--------------------- 77 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV--------------------- 77 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC---------------------
Confidence 356678999999999988832221 233568999999999999999999998642
Q ss_pred cccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
...++..+.......+.+-+ -....+++||||||+.++...++.
T Consensus 78 -------------------~~~~~~~~~~~~~~~l~~~l-----------------~~l~~~~vl~IDEi~~l~~~~~e~ 121 (328)
T PRK00080 78 -------------------NIRITSGPALEKPGDLAAIL-----------------TNLEEGDVLFIDEIHRLSPVVEEI 121 (328)
T ss_pred -------------------CeEEEecccccChHHHHHHH-----------------HhcccCCEEEEecHhhcchHHHHH
Confidence 00000000000001111100 011356799999999999999999
Q ss_pred HHHHHHcCceEE-EeCCee-EE---eeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhh
Q 004256 244 LLNVLTEGVNIV-EREGIS-FK---HPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (765)
Q Consensus 244 Ll~~l~~~~~~v-~r~G~~-~~---~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~ 318 (765)
|+.+|++..+.+ ...+.. .. ....+.+|+++|. .+.+.++|.+||+..+.+. |++.++..+|+.....
T Consensus 122 l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~-~~~l~~~L~sRf~~~~~l~-~~~~~e~~~il~~~~~----- 194 (328)
T PRK00080 122 LYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR-AGLLTSPLRDRFGIVQRLE-FYTVEELEKIVKRSAR----- 194 (328)
T ss_pred HHHHHHhcceeeeeccCccccceeecCCCceEEeecCC-cccCCHHHHHhcCeeeecC-CCCHHHHHHHHHHHHH-----
Confidence 999999875432 222221 11 1134889999984 4678899999999887787 6677776666652211
Q ss_pred HHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 004256 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (765)
Q Consensus 319 ~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A 398 (765)
..++.++++++++|+..|.. ++|....+++.+...|...+...|+.+++..+
T Consensus 195 ------------------------~~~~~~~~~~~~~ia~~~~G----~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~ 246 (328)
T PRK00080 195 ------------------------ILGVEIDEEGALEIARRSRG----TPRIANRLLRRVRDFAQVKGDGVITKEIADKA 246 (328)
T ss_pred ------------------------HcCCCcCHHHHHHHHHHcCC----CchHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 12688999999999876643 47999999999999998887789999999999
Q ss_pred HHHh
Q 004256 399 VELV 402 (765)
Q Consensus 399 ~~lv 402 (765)
+...
T Consensus 247 l~~~ 250 (328)
T PRK00080 247 LDML 250 (328)
T ss_pred HHHh
Confidence 9753
No 77
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=99.67 E-value=1.2e-15 Score=152.48 Aligned_cols=150 Identities=13% Similarity=0.176 Sum_probs=112.8
Q ss_pred ceEEEEEeCCCCCCchh-HHHHHHHHHHHHHhhc--CCCCeEEEEEeeCCCcEEEcCCCc----cHHHHHHHh---hc-C
Q 004256 562 ALVIFVVDASGSMALNR-MQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPSR----SIAMARKRL---ER-L 630 (765)
Q Consensus 562 ~~vv~vvD~SgSM~~~r-l~~ak~a~~~ll~~~~--~~~d~v~lv~F~~~~a~~~~p~t~----~~~~~~~~l---~~-l 630 (765)
.+|+||||.||||.+.. +..+|.++..++.... ..+.+|+||.|++. +..++|++. +...+...+ .. .
T Consensus 1 ~Dv~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~-~~~~~~l~~~~~~~~~~~~~~i~~l~~~~ 79 (186)
T cd01471 1 LDLYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTN-AKELIRLSSPNSTNKDLALNAIRALLSLY 79 (186)
T ss_pred CcEEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCC-ceEEEECCCccccchHHHHHHHHHHHhCc
Confidence 37899999999998754 9999999999987543 24569999999998 888887764 344422333 33 3
Q ss_pred CCCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhC
Q 004256 631 PCGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKA 710 (765)
Q Consensus 631 ~~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 710 (765)
..+|+|+++.||..|.+.+............+|||+|||.+|.+ ......++.++..
T Consensus 80 ~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~-----------------------~~~~~~a~~l~~~ 136 (186)
T cd01471 80 YPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSK-----------------------FRTLKEARKLRER 136 (186)
T ss_pred CCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCC-----------------------cchhHHHHHHHHC
Confidence 47899999999999999987632112223458999999998642 1234567788899
Q ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHc
Q 004256 711 GMSLLVIDTENKFVSTGFAKEIARVA 736 (765)
Q Consensus 711 gi~~~vig~~~~~~~~~~l~~LA~~~ 736 (765)
|+.+++|++|.+. +..+|+.||..-
T Consensus 137 gv~v~~igiG~~~-d~~~l~~ia~~~ 161 (186)
T cd01471 137 GVIIAVLGVGQGV-NHEENRSLVGCD 161 (186)
T ss_pred CCEEEEEEeehhh-CHHHHHHhcCCC
Confidence 9999999999754 788999998764
No 78
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.3e-16 Score=162.77 Aligned_cols=221 Identities=21% Similarity=0.263 Sum_probs=152.1
Q ss_pred CCCCCCceeechHHHHHHHHhh----hcC---------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALLLGA----IDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~----~~~---------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
+...+++|-|-+..++.|.-+. .+| -..|||||||||||||+|||++++..
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---------------- 209 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---------------- 209 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------------
Confidence 3456788999998777763222 111 13569999999999999999999863
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEecccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi 233 (765)
+..|+.+..+.....++|. |.. ....+|..| ...|+|||||
T Consensus 210 --------------------------~AtFIrvvgSElVqKYiGE---------GaR-lVRelF~lArekaPsIIFiDEI 253 (406)
T COG1222 210 --------------------------DATFIRVVGSELVQKYIGE---------GAR-LVRELFELAREKAPSIIFIDEI 253 (406)
T ss_pred --------------------------CceEEEeccHHHHHHHhcc---------chH-HHHHHHHHHhhcCCeEEEEech
Confidence 4567765555444445552 432 223344444 3469999999
Q ss_pred ccC-----------CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCC
Q 004256 234 NLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMT 300 (765)
Q Consensus 234 ~~L-----------~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~ 300 (765)
+.. +.++|..|+++|.+=. |-. -..++.||++|| ...-|+|+|+. ||+-.|++.+ |+
T Consensus 254 DAIg~kR~d~~t~gDrEVQRTmleLL~qlD------GFD--~~~nvKVI~ATN-R~D~LDPALLRPGR~DRkIEfpl-Pd 323 (406)
T COG1222 254 DAIGAKRFDSGTSGDREVQRTMLELLNQLD------GFD--PRGNVKVIMATN-RPDILDPALLRPGRFDRKIEFPL-PD 323 (406)
T ss_pred hhhhcccccCCCCchHHHHHHHHHHHHhcc------CCC--CCCCeEEEEecC-CccccChhhcCCCcccceeecCC-CC
Confidence 976 4589999999997522 111 124789999999 66778888886 9999888884 57
Q ss_pred HhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHH-HHHHHHHHHhCCCCCCChHHHHHHHHH
Q 004256 301 FEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARVAK 379 (765)
Q Consensus 301 ~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~-l~~l~~~a~~~g~~s~Ra~i~llr~A~ 379 (765)
.+.|.+|...-.. ...+.+++ ++.|+..+..+ |.-....++.-|.
T Consensus 324 ~~gR~~Il~IHtr-------------------------------kM~l~~dvd~e~la~~~~g~---sGAdlkaictEAG 369 (406)
T COG1222 324 EEGRAEILKIHTR-------------------------------KMNLADDVDLELLARLTEGF---SGADLKAICTEAG 369 (406)
T ss_pred HHHHHHHHHHHhh-------------------------------hccCccCcCHHHHHHhcCCC---chHHHHHHHHHHh
Confidence 7878888763211 11222222 45565555444 4445666778888
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHhcCCC
Q 004256 380 CLAALEGREKVNVDDLKKAVELVILPR 406 (765)
Q Consensus 380 a~A~l~gr~~Vt~edv~~A~~lvl~hR 406 (765)
-+|.-++|..||.+|+.+|++-|+...
T Consensus 370 m~AiR~~R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 370 MFAIRERRDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred HHHHHhccCeecHHHHHHHHHHHHhcc
Confidence 889999999999999999999887654
No 79
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=99.66 E-value=4.5e-15 Score=152.97 Aligned_cols=168 Identities=19% Similarity=0.284 Sum_probs=128.6
Q ss_pred CceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhc--CCCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhhcCC-CCCC
Q 004256 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLP-CGGG 635 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~--~~~d~v~lv~F~~~~a~~~~p~t~--~~~~~~~~l~~l~-~gG~ 635 (765)
+.+|+||||.|+||...+++.+|.++..++.... ...++||||.|++. +.+.+|++. +...+.+.|..+. .+|+
T Consensus 2 ~~DlvfllD~S~Sm~~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~-~~~~~~l~~~~~~~~l~~~i~~i~~~~~~ 80 (224)
T cd01475 2 PTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSST-VKQEFPLGRFKSKADLKRAVRRMEYLETG 80 (224)
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCc-eeEEecccccCCHHHHHHHHHhCcCCCCC
Confidence 5799999999999998999999999999887432 24679999999999 899999984 6778888898886 4778
Q ss_pred ChhHHHHHHHHHHHHhh-h--ccCC-CCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCC
Q 004256 636 SPLAHGLSMAVRVGLNA-E--KSGD-VGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAG 711 (765)
Q Consensus 636 T~l~~aL~~A~~~l~~~-~--~~~~-~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 711 (765)
|.++.||..+.+.+... . ++.. ....+|||+|||.++. ++...++.++..|
T Consensus 81 t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~-------------------------~~~~~a~~lk~~g 135 (224)
T cd01475 81 TMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQD-------------------------DVSEVAAKARALG 135 (224)
T ss_pred ChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcc-------------------------cHHHHHHHHHHCC
Confidence 99999999998764321 1 1111 1145789999998652 2355678888999
Q ss_pred CEEEEEeCCCCCCCHHHHHHHHHHcCC-eEEEcCCCChHHHHHHHHHH
Q 004256 712 MSLLVIDTENKFVSTGFAKEIARVAQG-KYYYLPNASDAVISATTKDA 758 (765)
Q Consensus 712 i~~~vig~~~~~~~~~~l~~LA~~~gG-~y~~~~~~~~~~l~~~~~~~ 758 (765)
|.+++||+|.. +...|++||...++ .+|.+.+.+ .+..++...
T Consensus 136 v~i~~VgvG~~--~~~~L~~ias~~~~~~~f~~~~~~--~l~~~~~~l 179 (224)
T cd01475 136 IEMFAVGVGRA--DEEELREIASEPLADHVFYVEDFS--TIEELTKKF 179 (224)
T ss_pred cEEEEEeCCcC--CHHHHHHHhCCCcHhcEEEeCCHH--HHHHHhhhc
Confidence 99999999873 68899999987654 667776543 455555543
No 80
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.65 E-value=2.6e-16 Score=167.44 Aligned_cols=194 Identities=18% Similarity=0.208 Sum_probs=128.2
Q ss_pred ceeechHHHHHH-HHhh-h-----------cC--CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCc
Q 004256 96 AVVGQDAIKTAL-LLGA-I-----------DR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (765)
Q Consensus 96 ~ivG~~~~~~aL-~l~~-~-----------~~--~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~ 160 (765)
.++|.+.+|+.+ .+.. + .+ ...||||+||||||||++|++++..+.....+
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~-------------- 88 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYV-------------- 88 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCc--------------
Confidence 489999988887 1111 0 11 23479999999999999998888776431110
Q ss_pred ccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccC----
Q 004256 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL---- 236 (765)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L---- 236 (765)
...+|+.+.+......++|.- .....+++.++.+||||||||+.|
T Consensus 89 ---------------------~~~~~v~v~~~~l~~~~~g~~----------~~~~~~~~~~a~~gvL~iDEi~~L~~~~ 137 (284)
T TIGR02880 89 ---------------------RKGHLVSVTRDDLVGQYIGHT----------APKTKEILKRAMGGVLFIDEAYYLYRPD 137 (284)
T ss_pred ---------------------ccceEEEecHHHHhHhhcccc----------hHHHHHHHHHccCcEEEEechhhhccCC
Confidence 234677666533223344421 012245778889999999999977
Q ss_pred -----CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC----CCcchHHHhhhhcceeecCCCCHhhHHHH
Q 004256 237 -----DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAA 307 (765)
Q Consensus 237 -----~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e----g~l~~~L~dRf~~~v~i~~p~~~e~r~dI 307 (765)
+.++++.|++.|+++. .++++|++++++. ..+.+.|+.||...+.+. |+. .+|+
T Consensus 138 ~~~~~~~~~~~~Ll~~le~~~-------------~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp-~l~---~edl 200 (284)
T TIGR02880 138 NERDYGQEAIEILLQVMENQR-------------DDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFP-DYS---EAEL 200 (284)
T ss_pred CccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeC-CcC---HHHH
Confidence 4678999999998754 3578888887642 234789999999876664 334 4566
Q ss_pred HHHHHHHHHhhHHHhccccccCcHHHHHHHHHh-------cccCCccCCHHHHHHHHH
Q 004256 308 VGIATQFQERSNEVFKMVEEETDLAKTQIILAR-------EYLKDVAIGREQLKYLVM 358 (765)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~-------~~~~nv~i~~~~l~~l~~ 358 (765)
..++.++....+ ..+++.....+..| .|++|++...++++.++.
T Consensus 201 ~~I~~~~l~~~~-------~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 201 LVIAGLMLKEQQ-------YRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHHHHHHhc-------cccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 666666655432 22334445555555 899999988888776653
No 81
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=99.65 E-value=6.4e-15 Score=145.73 Aligned_cols=144 Identities=25% Similarity=0.267 Sum_probs=107.0
Q ss_pred eEEEEEeCCCCCCc-hhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCC-----cEEEc--CCCcc-HHHHHHHhhcCCCC
Q 004256 563 LVIFVVDASGSMAL-NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDS-----AEVLL--PPSRS-IAMARKRLERLPCG 633 (765)
Q Consensus 563 ~vv~vvD~SgSM~~-~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~-----a~~~~--p~t~~-~~~~~~~l~~l~~g 633 (765)
.++||||+||||.+ +|++.+|.++..++......+|+++|++|++.. ..++. +.+.. ...+...|..+.++
T Consensus 2 ~v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (174)
T cd01454 2 AVTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKIKDFDESLHERARKRLAALSPG 81 (174)
T ss_pred EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEecCcccccchhHHHHHHccCCC
Confidence 58899999999987 699999999998877554469999999998861 12232 22222 24677889999999
Q ss_pred CCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCE
Q 004256 634 GGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMS 713 (765)
Q Consensus 634 G~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~ 713 (765)
|+|+++.||..+.+.+..... .+.+|||||||.+|.+....+ .....+++.++++.+.+.||.
T Consensus 82 g~T~~~~al~~a~~~l~~~~~----~~~~iiliTDG~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~gi~ 144 (174)
T cd01454 82 GNTRDGAAIRHAAERLLARPE----KRKILLVISDGEPNDLDYYEG-------------NVFATEDALRAVIEARKLGIE 144 (174)
T ss_pred CCCcHHHHHHHHHHHHhcCCC----cCcEEEEEeCCCcCcccccCc-------------chhHHHHHHHHHHHHHhCCcE
Confidence 999999999999999875321 245899999999986532110 001234555667888889999
Q ss_pred EEEEeCCCCC
Q 004256 714 LLVIDTENKF 723 (765)
Q Consensus 714 ~~vig~~~~~ 723 (765)
+++|++|...
T Consensus 145 v~~igig~~~ 154 (174)
T cd01454 145 VFGITIDRDA 154 (174)
T ss_pred EEEEEecCcc
Confidence 9999999754
No 82
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.65 E-value=5.2e-15 Score=142.95 Aligned_cols=146 Identities=23% Similarity=0.253 Sum_probs=108.1
Q ss_pred eEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCChhHHHH
Q 004256 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGL 642 (765)
Q Consensus 563 ~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~gG~T~l~~aL 642 (765)
+++||||+||||.+.|+..+|.++..++......+++++||.|++......++...+...+.+.|..+.++|+|+++.+|
T Consensus 2 ~v~illD~SgSM~~~k~~~a~~~~~~l~~~~~~~~~~v~li~F~~~~~~~~~~~~~~~~~~~~~l~~~~~~ggT~l~~al 81 (152)
T cd01462 2 PVILLVDQSGSMYGAPEEVAKAVALALLRIALAENRDTYLILFDSEFQTKIVDKTDDLEEPVEFLSGVQLGGGTDINKAL 81 (152)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCceEEecCCcccHHHHHHHHhcCCCCCCcCHHHHH
Confidence 68999999999998889999999888888666678999999999883333344455777888888888899999999999
Q ss_pred HHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 004256 643 SMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLVIDTENK 722 (765)
Q Consensus 643 ~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~ 722 (765)
..+++.+.+... .+..|||||||..+.. + .++...+...+..++.+++|++|..
T Consensus 82 ~~a~~~l~~~~~----~~~~ivliTDG~~~~~----------------~------~~~~~~~~~~~~~~~~v~~~~~g~~ 135 (152)
T cd01462 82 RYALELIERRDP----RKADIVLITDGYEGGV----------------S------DELLREVELKRSRVARFVALALGDH 135 (152)
T ss_pred HHHHHHHHhcCC----CCceEEEECCCCCCCC----------------C------HHHHHHHHHHHhcCcEEEEEEecCC
Confidence 999998765321 2347999999974310 0 2333334444566799999999975
Q ss_pred CCCHHHHHHHHHH
Q 004256 723 FVSTGFAKEIARV 735 (765)
Q Consensus 723 ~~~~~~l~~LA~~ 735 (765)
. +..+++..|+.
T Consensus 136 ~-~~~~~~~~~~~ 147 (152)
T cd01462 136 G-NPGYDRISAED 147 (152)
T ss_pred C-CchHHHHhhhh
Confidence 4 55555444443
No 83
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.65 E-value=1.5e-16 Score=151.34 Aligned_cols=128 Identities=34% Similarity=0.448 Sum_probs=98.3
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCcccc
Q 004256 118 GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDR 197 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~ 197 (765)
||||+||||||||++|+.+++.+.. +.-.+.++...++++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~----------------------------------------~~~~i~~~~~~~~~d 40 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGR----------------------------------------PVIRINCSSDTTEED 40 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTC----------------------------------------EEEEEE-TTTSTHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhc----------------------------------------ceEEEEecccccccc
Confidence 6999999999999999999998742 223355777788999
Q ss_pred eeeecccccccccCCCcccCCceeec--cCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeC------ceE
Q 004256 198 LIGSVDVEESVKTGTTVFQPGLLAEA--HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPC------KPL 269 (765)
Q Consensus 198 L~G~~d~e~~~~~g~~~~~~Gll~~A--~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~------~~~ 269 (765)
|+|..++. .+...+.+|.+.++ +++++||||||+.+++++..|+.+++++.+.+...+.....+. +|+
T Consensus 41 l~g~~~~~----~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (139)
T PF07728_consen 41 LIGSYDPS----NGQFEFKDGPLVRAMRKGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFR 116 (139)
T ss_dssp HHCEEET-----TTTTCEEE-CCCTTHHEEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EE
T ss_pred ceeeeeec----ccccccccccccccccceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceE
Confidence 99987655 56777888888866 7899999999999999999999999999876554444444443 499
Q ss_pred EEEeecCCC---CCcchHHHhhh
Q 004256 270 LIATYNPEE---GVVREHLLDRI 289 (765)
Q Consensus 270 lIat~N~~e---g~l~~~L~dRf 289 (765)
+|+|+|+.. ..++++|++||
T Consensus 117 ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 117 IIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp EEEEESSST--TTTTCHHHHTT-
T ss_pred EEEEEcCCCCCcCcCCHHHHhhC
Confidence 999999876 57999999998
No 84
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.65 E-value=3.6e-15 Score=160.99 Aligned_cols=216 Identities=22% Similarity=0.227 Sum_probs=146.7
Q ss_pred CCCceeechHHHHHHHHhhh-----cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 93 PLAAVVGQDAIKTALLLGAI-----DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 93 ~f~~ivG~~~~~~aL~l~~~-----~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
.|.++|||+.++..|..... .....+++|+||||||||++|+++++.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~------------------------- 56 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV------------------------- 56 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------------------------
Confidence 36789999999988732221 223457999999999999999999987641
Q ss_pred cccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~ 247 (765)
...++..+.......+.+.+ -....+++||||||+.+++..++.|+.+
T Consensus 57 ---------------~~~~~~~~~~~~~~~l~~~l-----------------~~~~~~~vl~iDEi~~l~~~~~e~l~~~ 104 (305)
T TIGR00635 57 ---------------NLKITSGPALEKPGDLAAIL-----------------TNLEEGDVLFIDEIHRLSPAVEELLYPA 104 (305)
T ss_pred ---------------CEEEeccchhcCchhHHHHH-----------------HhcccCCEEEEehHhhhCHHHHHHhhHH
Confidence 00000000000001111110 0012357999999999999999999999
Q ss_pred HHcCceEEE-eCCe---e--EEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHH
Q 004256 248 LTEGVNIVE-REGI---S--FKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (765)
Q Consensus 248 l~~~~~~v~-r~G~---~--~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~ 321 (765)
|++....+- -.|. . ...| .+.+|+++| ....+.++|.+||+.++.+. |++.++..+|+....
T Consensus 105 ~~~~~~~~v~~~~~~~~~~~~~~~-~~~li~~t~-~~~~l~~~l~sR~~~~~~l~-~l~~~e~~~il~~~~--------- 172 (305)
T TIGR00635 105 MEDFRLDIVIGKGPSARSVRLDLP-PFTLVGATT-RAGMLTSPLRDRFGIILRLE-FYTVEELAEIVSRSA--------- 172 (305)
T ss_pred HhhhheeeeeccCccccceeecCC-CeEEEEecC-CccccCHHHHhhcceEEEeC-CCCHHHHHHHHHHHH---------
Confidence 987764321 1111 1 1122 478888888 44678899999998877777 667777666654211
Q ss_pred hccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 004256 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (765)
Q Consensus 322 ~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~l 401 (765)
.. .++.++++++++|+..|.. .+|..+.+++.+...|...+...|+.++++.++..
T Consensus 173 ----------------~~----~~~~~~~~al~~ia~~~~G----~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 173 ----------------GL----LNVEIEPEAALEIARRSRG----TPRIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred ----------------HH----hCCCcCHHHHHHHHHHhCC----CcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 11 2578899999998776533 47999999999888888887788999999999987
No 85
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.65 E-value=4.2e-15 Score=144.00 Aligned_cols=153 Identities=20% Similarity=0.283 Sum_probs=123.3
Q ss_pred eEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcC--CCCeEEEEEeeCCCcEEEcCCCcc--HHHHHHHhhcCCC-C-CCC
Q 004256 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSRS--IAMARKRLERLPC-G-GGS 636 (765)
Q Consensus 563 ~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~--~~d~v~lv~F~~~~a~~~~p~t~~--~~~~~~~l~~l~~-g-G~T 636 (765)
+|+||||+||||.+.++..++.++..++..... ++++++||.|++. ....++++.. ...+...|+.+.. + |+|
T Consensus 2 di~~llD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~t 80 (161)
T cd01450 2 DIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDD-VRVEFSLNDYKSKDDLLKAVKNLKYLGGGGT 80 (161)
T ss_pred cEEEEEeCCCCcCHHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCC-ceEEEECCCCCCHHHHHHHHHhcccCCCCCc
Confidence 689999999999977999999999999875443 4899999999998 7788888865 8888889988864 3 389
Q ss_pred hhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEE
Q 004256 637 PLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLV 716 (765)
Q Consensus 637 ~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~v 716 (765)
++..||..+.+.+..........+.+|||+|||.+|.+. +...+++.+++.++.+++
T Consensus 81 ~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~-----------------------~~~~~~~~~~~~~v~v~~ 137 (161)
T cd01450 81 NTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGG-----------------------DPKEAAAKLKDEGIKVFV 137 (161)
T ss_pred cHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCc-----------------------chHHHHHHHHHCCCEEEE
Confidence 999999999999876532122335689999999987531 346677788888999999
Q ss_pred EeCCCCCCCHHHHHHHHHHcCCeEE
Q 004256 717 IDTENKFVSTGFAKEIARVAQGKYY 741 (765)
Q Consensus 717 ig~~~~~~~~~~l~~LA~~~gG~y~ 741 (765)
|+++. .+...|++||..+|+.|+
T Consensus 138 i~~g~--~~~~~l~~la~~~~~~~~ 160 (161)
T cd01450 138 VGVGP--ADEEELREIASCPSERHV 160 (161)
T ss_pred Eeccc--cCHHHHHHHhCCCCCCcc
Confidence 99987 478999999999855543
No 86
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.65 E-value=1.4e-16 Score=151.44 Aligned_cols=130 Identities=28% Similarity=0.414 Sum_probs=97.7
Q ss_pred eechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccC
Q 004256 98 VGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAG 175 (765)
Q Consensus 98 vG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (765)
||.|+.++.+ .+..++....+|||+||+||||+++|++||....+
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~--------------------------------- 47 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR--------------------------------- 47 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT---------------------------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc---------------------------------
Confidence 6889988888 67777888999999999999999999999998764
Q ss_pred cccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEE
Q 004256 176 NLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIV 255 (765)
Q Consensus 176 ~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v 255 (765)
...+|+.+.+..... .++..+.+|+|||+||+.|+++.|..|++++....
T Consensus 48 ------~~~~~~~~~~~~~~~---------------------~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~--- 97 (138)
T PF14532_consen 48 ------ANGPFIVIDCASLPA---------------------ELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE--- 97 (138)
T ss_dssp ------CCS-CCCCCHHCTCH---------------------HHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT---
T ss_pred ------cCCCeEEechhhCcH---------------------HHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC---
Confidence 345666555443221 23455789999999999999999999999998642
Q ss_pred EeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCC
Q 004256 256 EREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMT 300 (765)
Q Consensus 256 ~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~ 300 (765)
..++++|+++..+ ++.|+++||+||+.. .|.+|++
T Consensus 98 ---------~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~-~i~lPpL 138 (138)
T PF14532_consen 98 ---------RSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQL-EIHLPPL 138 (138)
T ss_dssp ---------TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTC-EEEE---
T ss_pred ---------CCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCC-EEeCCCC
Confidence 2367888888863 378999999999987 6888874
No 87
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.64 E-value=8.6e-16 Score=170.42 Aligned_cols=137 Identities=28% Similarity=0.385 Sum_probs=94.1
Q ss_pred ceeechHHHHHHHHhhhc----------------CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCC
Q 004256 96 AVVGQDAIKTALLLGAID----------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (765)
Q Consensus 96 ~ivG~~~~~~aL~l~~~~----------------~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~ 159 (765)
.|+||+.++++|..+..+ ....+|||+||||||||++|++||..+.
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~------------------ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD------------------ 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC------------------
Confidence 489999999988544321 1357899999999999999999998753
Q ss_pred cccccccccccccccCcccccccCCCeEeCCCCC-cccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCH
Q 004256 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGV-TEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE 238 (765)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~-~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~ 238 (765)
.||+.+++.. ++..++|. |.+..+ .+......+.+..+.+||||||||+.++.
T Consensus 134 ------------------------~pf~~id~~~l~~~gyvG~-d~e~~l-~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 134 ------------------------VPFAIADATTLTEAGYVGE-DVENIL-LKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred ------------------------CCceecchhhcccCCcccc-hHHHHH-HHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 4666655542 34445553 111111 01011124556778899999999999975
Q ss_pred --------------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC
Q 004256 239 --------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP 276 (765)
Q Consensus 239 --------------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~ 276 (765)
.+|+.||++|+...+.+...|+...-..++++|.|+|.
T Consensus 188 ~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~ni 239 (412)
T PRK05342 188 KSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNI 239 (412)
T ss_pred ccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCc
Confidence 49999999998666666544543333357888999887
No 88
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=99.64 E-value=2e-15 Score=165.88 Aligned_cols=265 Identities=18% Similarity=0.197 Sum_probs=180.8
Q ss_pred ceeechHHHHHHHHhhhc-----CC-------CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccc
Q 004256 96 AVVGQDAIKTALLLGAID-----RE-------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (765)
Q Consensus 96 ~ivG~~~~~~aL~l~~~~-----~~-------~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 163 (765)
.|.|+..+|+++.++.+. +. .-+|||.|.||||||.+.|++.+.++|.
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RA-------------------- 509 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRA-------------------- 509 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcce--------------------
Confidence 589999999999777762 21 2349999999999999999999998861
Q ss_pred cccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
..+-..+++.-.|..++ .+.-.+++|....|.|..|++||.+|||++.|.++-...
T Consensus 510 ----------------------V~tTGqGASavGLTa~v--~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtS 565 (854)
T KOG0477|consen 510 ----------------------VFTTGQGASAVGLTAYV--RKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTS 565 (854)
T ss_pred ----------------------eEeccCCccccceeEEE--eeCCccceeeeccCeEEEccCceEEeehhhhhcccccch
Confidence 11122223333333322 244445777888999999999999999999999999999
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC------------CcchHHHhhhhcceeecCCCCHhhHHHHHHHH
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg------------~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~ 311 (765)
+.++|++..+.|...|+...+.+++.+||++||--| .+.++++.||++.+-+..--+...-+.+.+.+
T Consensus 566 IHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fV 645 (854)
T KOG0477|consen 566 IHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFV 645 (854)
T ss_pred HHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHH
Confidence 999999999999999999999999999999999544 35678999999976666444444444444333
Q ss_pred H--HHHHhhHHHh---------cc--ccccCcHHHHHHHHHhccc--CCccCCHHHHHHHH-HHHHh---CC--CCCCCh
Q 004256 312 T--QFQERSNEVF---------KM--VEEETDLAKTQIILAREYL--KDVAIGREQLKYLV-MEALR---GG--CQGHRA 370 (765)
Q Consensus 312 ~--~~~~~~~~~~---------~~--~~~~~~~~~~~il~a~~~~--~nv~i~~~~l~~l~-~~a~~---~g--~~s~Ra 370 (765)
. |+-.++.... .. .....+.+...|..++... .--.+..+-+..+. ++-.+ .| -.+.|-
T Consensus 646 V~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRH 725 (854)
T KOG0477|consen 646 VGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRH 725 (854)
T ss_pred HHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHH
Confidence 2 2222222200 00 0011223344444444432 11223222222222 22111 12 125699
Q ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcC
Q 004256 371 ELYAARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (765)
Q Consensus 371 ~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~ 404 (765)
...++|.+.|+|.+.-+++|+.+|+..|+..++-
T Consensus 726 ieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ld 759 (854)
T KOG0477|consen 726 IESMIRMSEAHARMHLREYVTEEDVDMAIRVMLD 759 (854)
T ss_pred HHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHH
Confidence 9999999999999999999999999999987664
No 89
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.64 E-value=1.7e-15 Score=160.93 Aligned_cols=213 Identities=21% Similarity=0.239 Sum_probs=140.6
Q ss_pred CCCCCCceeechHHHH---HHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccc
Q 004256 90 QFFPLAAVVGQDAIKT---ALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~---aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (765)
+|..|+++|||+.+.- .|.-..-+....+++|+|||||||||+|+.|+...
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~-------------------------- 72 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT-------------------------- 72 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh--------------------------
Confidence 3556788999998542 22111122345889999999999999999999864
Q ss_pred ccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHH
Q 004256 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (765)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~ 246 (765)
+..|+.++... .|--|+...+...... ...-.+-|||||||++++...|+.||.
T Consensus 73 ----------------~~~f~~~sAv~-----~gvkdlr~i~e~a~~~-----~~~gr~tiLflDEIHRfnK~QQD~lLp 126 (436)
T COG2256 73 ----------------NAAFEALSAVT-----SGVKDLREIIEEARKN-----RLLGRRTILFLDEIHRFNKAQQDALLP 126 (436)
T ss_pred ----------------CCceEEecccc-----ccHHHHHHHHHHHHHH-----HhcCCceEEEEehhhhcChhhhhhhhh
Confidence 34566654432 1211221111111000 001124589999999999999999999
Q ss_pred HHHcCceEEEeCCeeEEeeCceEEEEeecCCC-CCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccc
Q 004256 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEE-GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (765)
Q Consensus 247 ~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e-g~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~ 325 (765)
.+++|. +++||+|+..+ -.+.++|++|.-++ .+. |.+.+....++.++...
T Consensus 127 ~vE~G~---------------iilIGATTENPsF~ln~ALlSR~~vf-~lk-~L~~~di~~~l~ra~~~----------- 178 (436)
T COG2256 127 HVENGT---------------IILIGATTENPSFELNPALLSRARVF-ELK-PLSSEDIKKLLKRALLD----------- 178 (436)
T ss_pred hhcCCe---------------EEEEeccCCCCCeeecHHHhhhhhee-eee-cCCHHHHHHHHHHHHhh-----------
Confidence 999997 57899988665 36889999999887 466 66666655555442221
Q ss_pred cccCcHHHHHHHHHhccc-CCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 326 EEETDLAKTQIILAREYL-KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 326 ~~~~~~~~~~il~a~~~~-~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
..+.+. ..+.++++++++++..+. . ..|..+++++.+...+.-.. ..+.+++++.+.
T Consensus 179 ------------~~rgl~~~~~~i~~~a~~~l~~~s~---G-D~R~aLN~LE~~~~~~~~~~--~~~~~~l~~~l~ 236 (436)
T COG2256 179 ------------EERGLGGQIIVLDEEALDYLVRLSN---G-DARRALNLLELAALSAEPDE--VLILELLEEILQ 236 (436)
T ss_pred ------------hhcCCCcccccCCHHHHHHHHHhcC---c-hHHHHHHHHHHHHHhcCCCc--ccCHHHHHHHHh
Confidence 112233 236689999999987652 2 47999999999887775443 344777766654
No 90
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=99.62 E-value=3e-14 Score=140.77 Aligned_cols=160 Identities=15% Similarity=0.183 Sum_probs=128.1
Q ss_pred eEEEEEeCCCCCCc-----hhHHHHHHHHHHHHHh--hcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCC
Q 004256 563 LVIFVVDASGSMAL-----NRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGG 635 (765)
Q Consensus 563 ~vv~vvD~SgSM~~-----~rl~~ak~a~~~ll~~--~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~gG~ 635 (765)
.++|+||.|.||.. +|+..+|.++..++.. ...+.++||||+|++..+.++.|+|.++..+...|..+.++|+
T Consensus 5 a~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT~D~~~~~~~L~~i~~~g~ 84 (187)
T cd01452 5 ATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLTNDQGKILSKLHDVQPKGK 84 (187)
T ss_pred EEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCCCCHHHHHHHHHhCCCCCc
Confidence 47899999999953 7999999998877522 2467899999999996699999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEE
Q 004256 636 SPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLL 715 (765)
Q Consensus 636 T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~ 715 (765)
|++..||..|...|+.........+.+||+.|||..+. .++.+.++++++.||++.
T Consensus 85 ~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~------------------------~~i~~~~~~lkk~~I~v~ 140 (187)
T cd01452 85 ANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDE------------------------KDLVKLAKRLKKNNVSVD 140 (187)
T ss_pred chHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCH------------------------HHHHHHHHHHHHcCCeEE
Confidence 99999999999998765443322244555555555331 456789999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHcC----CeEEEcCCC
Q 004256 716 VIDTENKFVSTGFAKEIARVAQ----GKYYYLPNA 746 (765)
Q Consensus 716 vig~~~~~~~~~~l~~LA~~~g----G~y~~~~~~ 746 (765)
+|++|...-+.+.|+.+.+..+ -.|..++.-
T Consensus 141 vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~~~ 175 (187)
T cd01452 141 IINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVPPG 175 (187)
T ss_pred EEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeCCC
Confidence 9999976668889999988874 457777653
No 91
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=99.62 E-value=1.7e-14 Score=161.52 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=131.9
Q ss_pred CCceEEEEEeCCCCCCc-hhHHHHHHHHHHHHHhhcCCCCeEE--EEEeeCCCcEEEcCCCc----cHHHHHHHhh----
Q 004256 560 AGALVIFVVDASGSMAL-NRMQNAKGAALKLLAESYTCRDQVS--IIPFRGDSAEVLLPPSR----SIAMARKRLE---- 628 (765)
Q Consensus 560 ~~~~vv~vvD~SgSM~~-~rl~~ak~a~~~ll~~~~~~~d~v~--lv~F~~~~a~~~~p~t~----~~~~~~~~l~---- 628 (765)
...+|+||||.|+||.. +++..+|.++..|+.......|++. ||.|++. +..+++++. +...+...|.
T Consensus 41 ~~lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~-~r~vfpL~s~~s~Dk~~aL~~I~sL~~ 119 (576)
T PTZ00441 41 EEVDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNN-TTELIRLGSGASKDKEQALIIVKSLRK 119 (576)
T ss_pred CCceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCC-ceEEEecCCCccccHHHHHHHHHHHHh
Confidence 46899999999999974 6668899999999887766666554 5999999 888888874 3344555554
Q ss_pred cCCCCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHH
Q 004256 629 RLPCGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIY 708 (765)
Q Consensus 629 ~l~~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 708 (765)
.+.++|+|++..||..+.+.+.+...+. ....+|||||||.++.. .+++.+++.|+
T Consensus 120 ~~~pgGgTnig~AL~~Aae~L~sr~~R~-nvpKVVILLTDG~sns~-----------------------~dvleaAq~LR 175 (576)
T PTZ00441 120 TYLPYGKTNMTDALLEVRKHLNDRVNRE-NAIQLVILMTDGIPNSK-----------------------YRALEESRKLK 175 (576)
T ss_pred hccCCCCccHHHHHHHHHHHHhhccccc-CCceEEEEEecCCCCCc-----------------------ccHHHHHHHHH
Confidence 3457899999999999988876432222 12348999999997632 23456778899
Q ss_pred hCCCEEEEEeCCCCCCCHHHHHHHH----HHcCCeEEEcCCCChHHHHHHHHHHHHhh
Q 004256 709 KAGMSLLVIDTENKFVSTGFAKEIA----RVAQGKYYYLPNASDAVISATTKDALSAL 762 (765)
Q Consensus 709 ~~gi~~~vig~~~~~~~~~~l~~LA----~~~gG~y~~~~~~~~~~l~~~~~~~~~~~ 762 (765)
..|+.+++|++|.+ ++..+++.|| ...++.||...+. ..+..+++..+..+
T Consensus 176 ~~GVeI~vIGVG~g-~n~e~LrlIAgC~p~~g~c~~Y~vadf--~eL~~ivk~LikkV 230 (576)
T PTZ00441 176 DRNVKLAVIGIGQG-INHQFNRLLAGCRPREGKCKFYSDADW--EEAKNLIKPFIAKV 230 (576)
T ss_pred HCCCEEEEEEeCCC-cCHHHHHHHhccCCCCCCCceEEeCCH--HHHHHHHHHHHHHh
Confidence 99999999999975 4778899998 3466788888654 57777777776654
No 92
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.62 E-value=3.3e-15 Score=157.65 Aligned_cols=213 Identities=18% Similarity=0.213 Sum_probs=137.0
Q ss_pred CceeechHHHHHHH--Hhh-------------hcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCC
Q 004256 95 AAVVGQDAIKTALL--LGA-------------IDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (765)
Q Consensus 95 ~~ivG~~~~~~aL~--l~~-------------~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~ 159 (765)
.+++|.+.+|.++. .+. ..+...+|||+||||||||++|++++..+.....+
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~------------- 72 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVL------------- 72 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcc-------------
Confidence 45899999998772 111 12345679999999999999999999876421110
Q ss_pred cccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCC--
Q 004256 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD-- 237 (765)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~-- 237 (765)
....++.+.+.-....++|.. .....+++..+.+|||||||++.|.
T Consensus 73 ----------------------~~~~~v~~~~~~l~~~~~g~~----------~~~~~~~~~~a~~~VL~IDE~~~L~~~ 120 (261)
T TIGR02881 73 ----------------------SKGHLIEVERADLVGEYIGHT----------AQKTREVIKKALGGVLFIDEAYSLARG 120 (261)
T ss_pred ----------------------cCCceEEecHHHhhhhhccch----------HHHHHHHHHhccCCEEEEechhhhccC
Confidence 133455554432222333321 1112356777889999999999986
Q ss_pred ------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC----CcchHHHhhhhcceeecCCCCHhhHHHH
Q 004256 238 ------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAA 307 (765)
Q Consensus 238 ------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg----~l~~~L~dRf~~~v~i~~p~~~e~r~dI 307 (765)
.+.++.|+..|+++. .++++|++.++.+. .++++|.+||...+.+. +++.+++.+|
T Consensus 121 ~~~~~~~~~i~~Ll~~~e~~~-------------~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~-~~~~~el~~I 186 (261)
T TIGR02881 121 GEKDFGKEAIDTLVKGMEDNR-------------NEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFP-DYTVEELMEI 186 (261)
T ss_pred CccchHHHHHHHHHHHHhccC-------------CCEEEEecCCcchhHHHHhcChHHHhccceEEEEC-CCCHHHHHHH
Confidence 457889999988753 24677777666442 46789999998877776 5677777666
Q ss_pred HHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHh------CCCCCCChHHHHHHHHHHH
Q 004256 308 VGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR------GGCQGHRAELYAARVAKCL 381 (765)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~------~g~~s~Ra~i~llr~A~a~ 381 (765)
+.... .. .+..++++++.++.+.... ....+.|...+++..|...
T Consensus 187 l~~~~-------------------------~~----~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~ 237 (261)
T TIGR02881 187 AERMV-------------------------KE----REYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRR 237 (261)
T ss_pred HHHHH-------------------------HH----cCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 65321 11 1456788888777665422 1223568889998887766
Q ss_pred HHH--cCCCCCCHHHH
Q 004256 382 AAL--EGREKVNVDDL 395 (765)
Q Consensus 382 A~l--~gr~~Vt~edv 395 (765)
.+. -+...++.+|+
T Consensus 238 ~~~r~~~~~~~~~~~~ 253 (261)
T TIGR02881 238 QAVRLLDKSDYSKEDL 253 (261)
T ss_pred HHHHHhccCCCCHHHH
Confidence 653 23345555554
No 93
>PHA02244 ATPase-like protein
Probab=99.62 E-value=2.7e-15 Score=160.94 Aligned_cols=151 Identities=16% Similarity=0.125 Sum_probs=111.7
Q ss_pred eeechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccccccccc
Q 004256 97 VVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTA 174 (765)
Q Consensus 97 ivG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (765)
.+|.++.+..+ .+..+.....+|||.||+|||||++|++||..+.
T Consensus 98 ~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg--------------------------------- 144 (383)
T PHA02244 98 KIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALD--------------------------------- 144 (383)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhC---------------------------------
Confidence 47777766544 4445555678999999999999999999999753
Q ss_pred CcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCcee--eccCCeEeccccccCCHHHHHHHHHHHHcCc
Q 004256 175 GNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA--EAHRGVLYIDEINLLDEGISNLLLNVLTEGV 252 (765)
Q Consensus 175 ~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~--~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~ 252 (765)
.||+.++....+..++|.++ +...+.+|.|. .++||+||||||+.++++++..|+.+++++.
T Consensus 145 ---------~pfv~In~l~d~~~L~G~i~-------~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~ 208 (383)
T PHA02244 145 ---------LDFYFMNAIMDEFELKGFID-------ANGKFHETPFYEAFKKGGLFFIDEIDASIPEALIIINSAIANKF 208 (383)
T ss_pred ---------CCEEEEecChHHHhhccccc-------ccccccchHHHHHhhcCCEEEEeCcCcCCHHHHHHHHHHhccCe
Confidence 46666654333444555321 11133444443 3589999999999999999999999999886
Q ss_pred eEEEeCCeeEEeeCceEEEEeecCCC----------CCcchHHHhhhhcceeecCCC
Q 004256 253 NIVEREGISFKHPCKPLLIATYNPEE----------GVVREHLLDRIAINLSADLPM 299 (765)
Q Consensus 253 ~~v~r~G~~~~~p~~~~lIat~N~~e----------g~l~~~L~dRf~~~v~i~~p~ 299 (765)
+...|..+..+.+|++|+|+|+.. ..+.++++|||-. +++.+|.
T Consensus 209 --l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~-I~~dyp~ 262 (383)
T PHA02244 209 --FDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAP-IEFDYDE 262 (383)
T ss_pred --EEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEE-eeCCCCc
Confidence 667777776677999999999832 3578999999965 5787764
No 94
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.62 E-value=1.4e-14 Score=141.60 Aligned_cols=149 Identities=17% Similarity=0.210 Sum_probs=108.1
Q ss_pred ceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhc--CCCCeEEEEEeeCC-CcEEEcCCCc--cHHHHHHHhhcCCC-CCC
Q 004256 562 ALVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGD-SAEVLLPPSR--SIAMARKRLERLPC-GGG 635 (765)
Q Consensus 562 ~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~--~~~d~v~lv~F~~~-~a~~~~p~t~--~~~~~~~~l~~l~~-gG~ 635 (765)
.+++||||+|+||.+ ++...|..+..++.... ...++|+||.|++. ...+.++++. +...+.+.|+.+.. ||+
T Consensus 1 ldv~~llD~S~Sm~~-~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~~~~~~l~~~i~~l~~~gg~ 79 (163)
T cd01476 1 LDLLFVLDSSGSVRG-KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKHNDGEELLEKVDNLRFIGGT 79 (163)
T ss_pred CCEEEEEeCCcchhh-hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCCCCHHHHHHHHHhCccCCCC
Confidence 368999999999984 56666777777765322 24899999999983 2666777763 77889999999974 788
Q ss_pred ChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHh-CCCEE
Q 004256 636 SPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYK-AGMSL 714 (765)
Q Consensus 636 T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~gi~~ 714 (765)
|+++.||..|.+++.......+....+|||+|||.+|.+ ....++.++. .++.+
T Consensus 80 T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~-------------------------~~~~~~~l~~~~~v~v 134 (163)
T cd01476 80 TATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDD-------------------------PEKQARILRAVPNIET 134 (163)
T ss_pred ccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCc-------------------------hHHHHHHHhhcCCCEE
Confidence 999999999999985322211222468999999997632 1334555666 89999
Q ss_pred EEEeCCCCC-CCHHHHHHHHHHc
Q 004256 715 LVIDTENKF-VSTGFAKEIARVA 736 (765)
Q Consensus 715 ~vig~~~~~-~~~~~l~~LA~~~ 736 (765)
++|++++.. ++...|..||..-
T Consensus 135 ~~vg~g~~~~~~~~~L~~ia~~~ 157 (163)
T cd01476 135 FAVGTGDPGTVDTEELHSITGNE 157 (163)
T ss_pred EEEECCCccccCHHHHHHHhCCC
Confidence 999998751 4666666665443
No 95
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=99.61 E-value=2.1e-14 Score=144.23 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=111.3
Q ss_pred eEEEEEeCCCCCCchhHH-HHHHHHHHHHHhhc--CCCCeEEEEEeeCCCcEEEcCCCc----cHHHHHHHhhcCC----
Q 004256 563 LVIFVVDASGSMALNRMQ-NAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPSR----SIAMARKRLERLP---- 631 (765)
Q Consensus 563 ~vv~vvD~SgSM~~~rl~-~ak~a~~~ll~~~~--~~~d~v~lv~F~~~~a~~~~p~t~----~~~~~~~~l~~l~---- 631 (765)
+++||||.|+||....+. .+|..+..++.... ..+.|||||.|++. +.+.+|++. +...+...|+.+.
T Consensus 2 Di~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~-~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~ 80 (192)
T cd01473 2 DLTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEK-NRDVVPFSDEERYDKNELLKKINDLKNSYR 80 (192)
T ss_pred cEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCC-ceeEEecCcccccCHHHHHHHHHHHHhccC
Confidence 689999999999865444 35666666665432 45789999999998 888888874 4567777777663
Q ss_pred CCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCC
Q 004256 632 CGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAG 711 (765)
Q Consensus 632 ~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 711 (765)
.+|+|+++.||..|.+.+............++||||||..+.+. ...+..+++.+++.|
T Consensus 81 ~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~---------------------~~~~~~~a~~lk~~g 139 (192)
T cd01473 81 SGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSAS---------------------KKELQDISLLYKEEN 139 (192)
T ss_pred CCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcc---------------------hhhHHHHHHHHHHCC
Confidence 58999999999999888754322111224479999999987421 134567888899999
Q ss_pred CEEEEEeCCCCCCCHHHHHHHHHH
Q 004256 712 MSLLVIDTENKFVSTGFAKEIARV 735 (765)
Q Consensus 712 i~~~vig~~~~~~~~~~l~~LA~~ 735 (765)
|.+++||+|.. +...|+.||..
T Consensus 140 V~i~~vGiG~~--~~~el~~ia~~ 161 (192)
T cd01473 140 VKLLVVGVGAA--SENKLKLLAGC 161 (192)
T ss_pred CEEEEEEeccc--cHHHHHHhcCC
Confidence 99999999974 56678888864
No 96
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=99.61 E-value=2.2e-14 Score=142.28 Aligned_cols=161 Identities=16% Similarity=0.201 Sum_probs=122.4
Q ss_pred ceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcC--CCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhhcCC-CCCCC
Q 004256 562 ALVIFVVDASGSMALNRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLP-CGGGS 636 (765)
Q Consensus 562 ~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~--~~d~v~lv~F~~~~a~~~~p~t~--~~~~~~~~l~~l~-~gG~T 636 (765)
.+++||||.|+||....+..+|..+..++..... ...|||||.|++. +.+.++++. +...+.+.++.++ .+|+|
T Consensus 1 ~Di~fvlD~S~S~~~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~-~~~~~~l~~~~~~~~~~~~i~~~~~~~g~T 79 (177)
T cd01469 1 MDIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSES-FRTEFTLNEYRTKEEPLSLVKHISQLLGLT 79 (177)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCc-eeEEEecCccCCHHHHHHHHHhCccCCCCc
Confidence 3689999999999988999999999999874433 3689999999999 888888884 6667778888775 67789
Q ss_pred hhHHHHHHHHHHHHhh-hccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEE
Q 004256 637 PLAHGLSMAVRVGLNA-EKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLL 715 (765)
Q Consensus 637 ~l~~aL~~A~~~l~~~-~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~ 715 (765)
+++.||..|.+.+... .......+.++||+|||.++.+.. ...+++.++..||.++
T Consensus 80 ~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~~-----------------------~~~~~~~~k~~gv~v~ 136 (177)
T cd01469 80 NTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPL-----------------------LKDVIPQAEREGIIRY 136 (177)
T ss_pred cHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCccc-----------------------cHHHHHHHHHCCcEEE
Confidence 9999999999886321 111122345789999999874321 1335566778999999
Q ss_pred EEeCCCCC---CCHHHHHHHHHHcCC-eEEEcCCC
Q 004256 716 VIDTENKF---VSTGFAKEIARVAQG-KYYYLPNA 746 (765)
Q Consensus 716 vig~~~~~---~~~~~l~~LA~~~gG-~y~~~~~~ 746 (765)
+||+|... .....|+.||...++ .+|.+++.
T Consensus 137 ~Vgvg~~~~~~~~~~~L~~ias~p~~~h~f~~~~~ 171 (177)
T cd01469 137 AIGVGGHFQRENSREELKTIASKPPEEHFFNVTDF 171 (177)
T ss_pred EEEecccccccccHHHHHHHhcCCcHHhEEEecCH
Confidence 99998743 236889999998775 56667754
No 97
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.60 E-value=3.1e-14 Score=139.74 Aligned_cols=163 Identities=13% Similarity=0.137 Sum_probs=117.9
Q ss_pred eEEEEEeCCCCCC------c---hhHHHHHHHHHHHHH-hhcCCCCeEEEEEeeCCCcEEE------cCCCccH---HHH
Q 004256 563 LVIFVVDASGSMA------L---NRMQNAKGAALKLLA-ESYTCRDQVSIIPFRGDSAEVL------LPPSRSI---AMA 623 (765)
Q Consensus 563 ~vv~vvD~SgSM~------~---~rl~~ak~a~~~ll~-~~~~~~d~v~lv~F~~~~a~~~------~p~t~~~---~~~ 623 (765)
.++|+||.||||. + +||+.+|..+..+.. ..-+..|++| |.+. +.+. .|||.+. ..+
T Consensus 2 ~l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG---~~g~-~~~~~~lt~d~p~t~d~~~~~~l 77 (191)
T cd01455 2 RLKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIG---HSGD-GPCVPFVKTNHPPKNNKERLETL 77 (191)
T ss_pred ceEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHHHHHhCccceee---ecCc-ccccCccccccCcccchhHHHHH
Confidence 4789999999992 2 789999987666642 1245778888 5555 3222 2444443 678
Q ss_pred HHHhhcCCC---CCCChhHHHHHHHHHHHH-hhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHH
Q 004256 624 RKRLERLPC---GGGSPLAHGLSMAVRVGL-NAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDE 699 (765)
Q Consensus 624 ~~~l~~l~~---gG~T~l~~aL~~A~~~l~-~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (765)
...|+.+.. |.+|. +||..|.+.+. +.... ..+|||+|||..|.+.-.
T Consensus 78 ~~~l~~~q~g~ag~~Ta--dAi~~av~rl~~~~~a~----~kvvILLTDG~n~~~~i~---------------------- 129 (191)
T cd01455 78 KMMHAHSQFCWSGDHTV--EATEFAIKELAAKEDFD----EAIVIVLSDANLERYGIQ---------------------- 129 (191)
T ss_pred HHHHHhcccCccCccHH--HHHHHHHHHHHhcCcCC----CcEEEEEeCCCcCCCCCC----------------------
Confidence 888888764 45676 99999999986 53332 338999999998754221
Q ss_pred HHHH-HHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHHHHHh
Q 004256 700 ILEV-AGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDALSA 761 (765)
Q Consensus 700 ~~~~-a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~~~~~ 761 (765)
...+ ++..++.||++|+|++|.. +...++.+|+.+||+||...+. ..|..+++.++..
T Consensus 130 P~~aAa~lA~~~gV~iytIgiG~~--d~~~l~~iA~~tgG~~F~A~d~--~~L~~iy~~I~~~ 188 (191)
T cd01455 130 PKKLADALAREPNVNAFVIFIGSL--SDEADQLQRELPAGKAFVCMDT--SELPHIMQQIFTS 188 (191)
T ss_pred hHHHHHHHHHhCCCEEEEEEecCC--CHHHHHHHHhCCCCcEEEeCCH--HHHHHHHHHHHHH
Confidence 1343 4555678999999999974 5788999999999999999855 5788888887654
No 98
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.60 E-value=9.1e-15 Score=161.33 Aligned_cols=223 Identities=22% Similarity=0.264 Sum_probs=135.5
Q ss_pred CceeechHHHHHHHHhhh-----------c-------CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 95 AAVVGQDAIKTALLLGAI-----------D-------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 95 ~~ivG~~~~~~aL~l~~~-----------~-------~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
..|+||+.+++.+..+.. . ...++|||+||||||||++|++||..+.
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~--------------- 141 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN--------------- 141 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC---------------
Confidence 348999999998854431 0 1246899999999999999999998753
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCC-CcccceeeecccccccccCCCcccCCceeeccCCeEecccccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLG-VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINL 235 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~-~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~ 235 (765)
.||+.+.+. +++..++|. |.+..+ +......++.+..+.+||||||||+.
T Consensus 142 ---------------------------~pf~~~da~~L~~~gyvG~-d~e~~L-~~~~~~~~~~l~~a~~gIV~lDEIdk 192 (413)
T TIGR00382 142 ---------------------------VPFAIADATTLTEAGYVGE-DVENIL-LKLLQAADYDVEKAQKGIIYIDEIDK 192 (413)
T ss_pred ---------------------------CCeEEechhhccccccccc-cHHHHH-HHHHHhCcccHHhcccceEEecccch
Confidence 344443332 233345553 211111 11112235667788899999999999
Q ss_pred CCH--------------HHHHHHHHHHHcCceE-EEeCCeeEEeeCceEEEEeecC---CCCC-----------------
Q 004256 236 LDE--------------GISNLLLNVLTEGVNI-VEREGISFKHPCKPLLIATYNP---EEGV----------------- 280 (765)
Q Consensus 236 L~~--------------~~q~~Ll~~l~~~~~~-v~r~G~~~~~p~~~~lIat~N~---~eg~----------------- 280 (765)
++. .+|+.||++|+ |.+. +.+.|+...--.++++|.|+|. +.|.
T Consensus 193 l~~~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~ 271 (413)
T TIGR00382 193 ISRKSENPSITRDVSGEGVQQALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSI 271 (413)
T ss_pred hchhhccccccccccchhHHHHHHHHhh-ccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccc
Confidence 987 69999999995 6532 3333433222246888899887 2222
Q ss_pred -----------------------------cchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcH
Q 004256 281 -----------------------------VREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDL 331 (765)
Q Consensus 281 -----------------------------l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~ 331 (765)
|.|+|+.|++.++.+. |.+.+....|+..-...
T Consensus 272 gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~-pL~~~~L~~Il~~~~n~----------------- 333 (413)
T TIGR00382 272 GFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLE-KLDEEALIAILTKPKNA----------------- 333 (413)
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecC-CCCHHHHHHHHHHHHHH-----------------
Confidence 3455555555554333 44555554444321100
Q ss_pred HHHHHHHHhcc-cCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Q 004256 332 AKTQIILAREY-LKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (765)
Q Consensus 332 ~~~~il~a~~~-~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~ 381 (765)
+..++...... --.+.++++++++|++.+..... |.|.+..+++....-
T Consensus 334 l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~-GAR~Lr~iie~~l~~ 383 (413)
T TIGR00382 334 LVKQYQALFKMDNVELDFEEEALKAIAKKALERKT-GARGLRSIVEGLLLD 383 (413)
T ss_pred HHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCC-CchHHHHHHHHhhHH
Confidence 00000001100 12378999999999998877655 789988887765543
No 99
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=7e-15 Score=164.26 Aligned_cols=215 Identities=17% Similarity=0.217 Sum_probs=152.1
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcC-------------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCC
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDR-------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~-------------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~ 155 (765)
-....|++|-|++.+|+.|+-+...| -..+||+|||||||||++||+|+...
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~--------------- 492 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA--------------- 492 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---------------
Confidence 34567999999999999885332222 23569999999999999999999874
Q ss_pred CCCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEeccc
Q 004256 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (765)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDE 232 (765)
..+|+.+.....-+.++|.- |+.++. .|.+| ...|+|+||
T Consensus 493 ---------------------------~~nFlsvkgpEL~sk~vGeS--Er~ir~--------iF~kAR~~aP~IiFfDE 535 (693)
T KOG0730|consen 493 ---------------------------GMNFLSVKGPELFSKYVGES--ERAIRE--------VFRKARQVAPCIIFFDE 535 (693)
T ss_pred ---------------------------cCCeeeccCHHHHHHhcCch--HHHHHH--------HHHHHhhcCCeEEehhh
Confidence 46788877776667777731 222211 22222 236999999
Q ss_pred cccCC-----------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCC
Q 004256 233 INLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (765)
Q Consensus 233 i~~L~-----------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~ 299 (765)
|+.+. +.+++.||.-|+... ...++.|||+|| .+..++++|++ ||+.++.|. +|
T Consensus 536 iDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e-----------~~k~V~ViAATN-Rpd~ID~ALlRPGRlD~iiyVp-lP 602 (693)
T KOG0730|consen 536 IDALAGSRGGSSSGVTDRVLSQLLTEMDGLE-----------ALKNVLVIAATN-RPDMIDPALLRPGRLDRIIYVP-LP 602 (693)
T ss_pred HHhHhhccCCCccchHHHHHHHHHHHccccc-----------ccCcEEEEeccC-ChhhcCHHHcCCcccceeEeec-Cc
Confidence 99873 456777777776432 113689999999 77788999999 999999898 46
Q ss_pred CHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHH-HHHHHHHHHHhCCCCCCChHHHHHHHH
Q 004256 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYAARVA 378 (765)
Q Consensus 300 ~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~-~l~~l~~~a~~~g~~s~Ra~i~llr~A 378 (765)
+.+.|.+|+..... ...++++ -++.|++....+ |.+....+++.|
T Consensus 603 D~~aR~~Ilk~~~k-------------------------------kmp~~~~vdl~~La~~T~g~---SGAel~~lCq~A 648 (693)
T KOG0730|consen 603 DLEARLEILKQCAK-------------------------------KMPFSEDVDLEELAQATEGY---SGAEIVAVCQEA 648 (693)
T ss_pred cHHHHHHHHHHHHh-------------------------------cCCCCccccHHHHHHHhccC---ChHHHHHHHHHH
Confidence 88888888763211 2334433 244555444333 778888899999
Q ss_pred HHHHHHcC--CCCCCHHHHHHHHHHh
Q 004256 379 KCLAALEG--REKVNVDDLKKAVELV 402 (765)
Q Consensus 379 ~a~A~l~g--r~~Vt~edv~~A~~lv 402 (765)
...|.-+. ...|+.+|+.+|++.+
T Consensus 649 ~~~a~~e~i~a~~i~~~hf~~al~~~ 674 (693)
T KOG0730|consen 649 ALLALRESIEATEITWQHFEEALKAV 674 (693)
T ss_pred HHHHHHHhcccccccHHHHHHHHHhh
Confidence 88887654 5689999999999753
No 100
>CHL00181 cbbX CbbX; Provisional
Probab=99.57 E-value=7.4e-15 Score=156.29 Aligned_cols=156 Identities=23% Similarity=0.260 Sum_probs=104.8
Q ss_pred ceeechHHHHHH-HHhh---h---------c-C-CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCc
Q 004256 96 AVVGQDAIKTAL-LLGA---I---------D-R-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (765)
Q Consensus 96 ~ivG~~~~~~aL-~l~~---~---------~-~-~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~ 160 (765)
+++|...+|+.+ .+.. + . + ...++||+||||||||++|++++..+...+.+
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~-------------- 89 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYI-------------- 89 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCC--------------
Confidence 589999988876 1111 1 0 1 23459999999999999999998875421111
Q ss_pred ccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccC----
Q 004256 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL---- 236 (765)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L---- 236 (765)
...+|+.+........++|.- .....+++.+|.+|||||||++.|
T Consensus 90 ---------------------~~~~~~~v~~~~l~~~~~g~~----------~~~~~~~l~~a~ggVLfIDE~~~l~~~~ 138 (287)
T CHL00181 90 ---------------------KKGHLLTVTRDDLVGQYIGHT----------APKTKEVLKKAMGGVLFIDEAYYLYKPD 138 (287)
T ss_pred ---------------------CCCceEEecHHHHHHHHhccc----------hHHHHHHHHHccCCEEEEEccchhccCC
Confidence 234566655332222333320 011235677788999999999986
Q ss_pred -----CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC----CCcchHHHhhhhcceeecCCCCHhhHHHH
Q 004256 237 -----DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAA 307 (765)
Q Consensus 237 -----~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e----g~l~~~L~dRf~~~v~i~~p~~~e~r~dI 307 (765)
..++++.|+..|+++. .++++|++++++. -.+.|.|..||...+.+. |++.++..+|
T Consensus 139 ~~~~~~~e~~~~L~~~me~~~-------------~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~-~~t~~el~~I 204 (287)
T CHL00181 139 NERDYGSEAIEILLQVMENQR-------------DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFP-DYTPEELLQI 204 (287)
T ss_pred CccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcC-CcCHHHHHHH
Confidence 5688999999998753 2567888877532 134589999999988777 6777777777
Q ss_pred HHH
Q 004256 308 VGI 310 (765)
Q Consensus 308 ~~l 310 (765)
+..
T Consensus 205 ~~~ 207 (287)
T CHL00181 205 AKI 207 (287)
T ss_pred HHH
Confidence 653
No 101
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=99.57 E-value=1.4e-13 Score=150.64 Aligned_cols=262 Identities=21% Similarity=0.202 Sum_probs=179.1
Q ss_pred ceeechHHHHHHHHhhhcC------------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccc
Q 004256 96 AVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (765)
Q Consensus 96 ~ivG~~~~~~aL~l~~~~~------------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 163 (765)
.|.|++-+|+++++..+.. ++-+||+.|.|-|+||.|.|++-+..|+
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntApl--------------------- 360 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPL--------------------- 360 (818)
T ss_pred ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccc---------------------
Confidence 5999999999996655421 2335999999999999999999988774
Q ss_pred cccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
.|..|..| ..=|-+....+. .-.+|+...+.|....|++||++|||++.|++--..+
T Consensus 361 ----AI~TTGRG--------SSGVGLTAAVTt-----------D~eTGERRLEAGAMVLADRGVVCIDEFDKMsDiDRvA 417 (818)
T KOG0479|consen 361 ----AIATTGRG--------SSGVGLTAAVTT-----------DQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVA 417 (818)
T ss_pred ----cccccCCC--------CCCccceeEEee-----------ccccchhhhhcCceEEccCceEEehhcccccchhHHH
Confidence 12111111 001111111111 1234777888899999999999999999999999999
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC------------CcchHHHhhhhcceeecCCCCHhhHHHHHHHH
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg------------~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~ 311 (765)
+.++|+++.++|...|++.+..+++.|||+.||--| .|...|+.||++.+-+..-.+.+.-..|.+.+
T Consensus 418 IHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHV 497 (818)
T KOG0479|consen 418 IHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHV 497 (818)
T ss_pred HHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHH
Confidence 999999999999999999999999999999999443 36678999999975333233333333444444
Q ss_pred HHHHHh--hHHHhccccc-----------------------------------------cCcHHHHHHHHHhcccCCccC
Q 004256 312 TQFQER--SNEVFKMVEE-----------------------------------------ETDLAKTQIILAREYLKDVAI 348 (765)
Q Consensus 312 ~~~~~~--~~~~~~~~~~-----------------------------------------~~~~~~~~il~a~~~~~nv~i 348 (765)
+..-.. +...-+...+ ...-.+..|-.++... .-.+
T Consensus 498 LRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~~~~k~lti~F~rKYIhyAk~ri-~P~L 576 (818)
T KOG0479|consen 498 LRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQQHEKLLTIDFMRKYIHYAKSRI-KPKL 576 (818)
T ss_pred HHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhccccccccceeeHHHHHHHHHHHHhhc-Cccc
Confidence 322100 0000000000 0001223333333321 1257
Q ss_pred CHHHHHHHHHHHHhCC------------CCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 004256 349 GREQLKYLVMEALRGG------------CQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELV 402 (765)
Q Consensus 349 ~~~~l~~l~~~a~~~g------------~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lv 402 (765)
++++.++|++....+. -.+.|.+..++|+|.|+|..+-...|+.+|.+.|++|+
T Consensus 577 t~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll 642 (818)
T KOG0479|consen 577 TQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNLL 642 (818)
T ss_pred cHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHH
Confidence 8899999988755431 23568999999999999999999999999999997764
No 102
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=99.57 E-value=2.1e-13 Score=134.09 Aligned_cols=157 Identities=30% Similarity=0.457 Sum_probs=127.8
Q ss_pred CceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCC--CCeEEEEEeeCCCcEEEcCC--CccHHHHHHHhhcCC--CCC
Q 004256 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYTC--RDQVSIIPFRGDSAEVLLPP--SRSIAMARKRLERLP--CGG 634 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~--~d~v~lv~F~~~~a~~~~p~--t~~~~~~~~~l~~l~--~gG 634 (765)
+.+++||||.|+||.+.++..++..+..++...... .++++++.|++. .....++ +.+...+...+..+. .+|
T Consensus 1 ~~~v~l~vD~S~SM~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (177)
T smart00327 1 PLDVVFLLDGSGSMGPNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDD-ATVLFPLNDSRSKDALLEALASLSYKLGG 79 (177)
T ss_pred CccEEEEEeCCCccchHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCC-ceEEEcccccCCHHHHHHHHHhcCCCCCC
Confidence 368999999999998899999999888888744333 899999999997 7777787 678999999999998 488
Q ss_pred CChhHHHHHHHHHHHHhhhccC-CCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCE
Q 004256 635 GSPLAHGLSMAVRVGLNAEKSG-DVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMS 713 (765)
Q Consensus 635 ~T~l~~aL~~A~~~l~~~~~~~-~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~ 713 (765)
+|++..+|..+.+.+....... ...+.+||++|||.++.+ +......+.+.+.++.
T Consensus 80 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~-----------------------~~~~~~~~~~~~~~i~ 136 (177)
T smart00327 80 GTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDG-----------------------GDLLKAAKELKRSGVK 136 (177)
T ss_pred CchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCC-----------------------ccHHHHHHHHHHCCCE
Confidence 9999999999998875322111 112458999999998742 1346677777888899
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCeEEE
Q 004256 714 LLVIDTENKFVSTGFAKEIARVAQGKYYY 742 (765)
Q Consensus 714 ~~vig~~~~~~~~~~l~~LA~~~gG~y~~ 742 (765)
++.|+++... +...++.|+..++|.|.+
T Consensus 137 i~~i~~~~~~-~~~~l~~~~~~~~~~~~~ 164 (177)
T smart00327 137 VFVVGVGNDV-DEEELKKLASAPGGVYVF 164 (177)
T ss_pred EEEEEccCcc-CHHHHHHHhCCCcceEEe
Confidence 9999999754 688999999999999987
No 103
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.4e-14 Score=157.21 Aligned_cols=216 Identities=21% Similarity=0.230 Sum_probs=149.1
Q ss_pred CCCCCceeechHHHHHH-HHhhh--cC---------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCC
Q 004256 91 FFPLAAVVGQDAIKTAL-LLGAI--DR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL-~l~~~--~~---------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~ 158 (765)
...|+++.|-+++|..| .+.-+ +| ...+|||+||||||||+|||+++..
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE------------------- 360 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE------------------- 360 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc-------------------
Confidence 34699999999999998 22221 22 2456999999999999999999864
Q ss_pred CcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEecccccc
Q 004256 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINL 235 (765)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~~ 235 (765)
...||.....+..++.++|- |+... ..++..| ...|+|||||+.
T Consensus 361 -----------------------A~VPFF~~sGSEFdEm~VGv---------GArRV-RdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 361 -----------------------AGVPFFYASGSEFDEMFVGV---------GARRV-RDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred -----------------------cCCCeEeccccchhhhhhcc---------cHHHH-HHHHHHHHhcCCeEEEEechhh
Confidence 36788887777777778874 43322 2344444 246999999997
Q ss_pred CCH-----------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCCHh
Q 004256 236 LDE-----------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFE 302 (765)
Q Consensus 236 L~~-----------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~~e 302 (765)
... .+++.||--|+.-. ....++||++|| -+..|+++|.. ||+.+|.+.. |+..
T Consensus 408 vG~kR~~~~~~y~kqTlNQLLvEmDGF~-----------qNeGiIvigATN-fpe~LD~AL~RPGRFD~~v~Vp~-PDv~ 474 (752)
T KOG0734|consen 408 VGGKRNPSDQHYAKQTLNQLLVEMDGFK-----------QNEGIIVIGATN-FPEALDKALTRPGRFDRHVTVPL-PDVR 474 (752)
T ss_pred hcccCCccHHHHHHHHHHHHHHHhcCcC-----------cCCceEEEeccC-ChhhhhHHhcCCCccceeEecCC-CCcc
Confidence 632 35566776665422 122579999999 56667778875 9999988875 4777
Q ss_pred hHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q 004256 303 DRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLA 382 (765)
Q Consensus 303 ~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A 382 (765)
-|.+|+.+... ..+-.-.++..+ | ++..-..+.-.+.+++..|...|
T Consensus 475 GR~eIL~~yl~---------------------------ki~~~~~VD~~i---i---ARGT~GFsGAdLaNlVNqAAlkA 521 (752)
T KOG0734|consen 475 GRTEILKLYLS---------------------------KIPLDEDVDPKI---I---ARGTPGFSGADLANLVNQAALKA 521 (752)
T ss_pred cHHHHHHHHHh---------------------------cCCcccCCCHhH---h---ccCCCCCchHHHHHHHHHHHHHH
Confidence 78888764221 111111222222 1 33333335566888999999999
Q ss_pred HHcCCCCCCHHHHHHHHHHhcC
Q 004256 383 ALEGREKVNVDDLKKAVELVIL 404 (765)
Q Consensus 383 ~l~gr~~Vt~edv~~A~~lvl~ 404 (765)
+.+|...|+..|++.|---+|-
T Consensus 522 a~dga~~VtM~~LE~akDrIlM 543 (752)
T KOG0734|consen 522 AVDGAEMVTMKHLEFAKDRILM 543 (752)
T ss_pred HhcCcccccHHHHhhhhhheee
Confidence 9999999999999998766554
No 104
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=99.56 E-value=1e-13 Score=149.65 Aligned_cols=261 Identities=18% Similarity=0.165 Sum_probs=176.4
Q ss_pred ceeechHHHHHHHHhhhcC------------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccc
Q 004256 96 AVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (765)
Q Consensus 96 ~ivG~~~~~~aL~l~~~~~------------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 163 (765)
.|.|.+.+|+++.+..+.. ++-+|||.|.|||+||.|.+.+-..+| +.|..
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsP-IaVYT---------------- 394 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSP-IAVYT---------------- 394 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCc-eEEEe----------------
Confidence 5899999999996665532 234599999999999999999988876 22211
Q ss_pred cccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
-.-+.+...|..++ -+...+-+...+-|.+..|+|||++|||++.|.++-..+
T Consensus 395 -------------------------SGKGSSAAGLTASV--~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVA 447 (729)
T KOG0481|consen 395 -------------------------SGKGSSAAGLTASV--IRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVA 447 (729)
T ss_pred -------------------------cCCCcccccceeeE--EecCCcceEEEecceEEEecCCEEEeehhhccCchhhhH
Confidence 11112222222222 122222333455688999999999999999999999999
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC------------CcchHHHhhhhcceeecCCCCHhhHHHHHHHH
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg------------~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~ 311 (765)
+.++|+...+.|...|++.....+..|+|+.||--| +|-+-++.||++++-+....+.++-..|.
T Consensus 448 IHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lA--- 524 (729)
T KOG0481|consen 448 IHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLA--- 524 (729)
T ss_pred HHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHH---
Confidence 999999999999999999999999999999999322 46688999999986565433333333333
Q ss_pred HHHHHhhHH----Hhcc---ccc--cCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhC---------------C-CC
Q 004256 312 TQFQERSNE----VFKM---VEE--ETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG---------------G-CQ 366 (765)
Q Consensus 312 ~~~~~~~~~----~~~~---~~~--~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~---------------g-~~ 366 (765)
.|.+.-... +... ... .++.+...+...+.-.+ -+++.++-+.|....... . -.
T Consensus 525 kHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~-PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPI 603 (729)
T KOG0481|consen 525 KHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCG-PRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPI 603 (729)
T ss_pred HHhhhhhccccccccCccccCCCcccHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCce
Confidence 343332221 1111 011 11222222222222211 367888877776543211 1 12
Q ss_pred CCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcC
Q 004256 367 GHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (765)
Q Consensus 367 s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~ 404 (765)
+.|.+..++|++..+|.++-....|++||++|++|-..
T Consensus 604 TVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~v 641 (729)
T KOG0481|consen 604 TVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLFQV 641 (729)
T ss_pred eHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhH
Confidence 66999999999999999999999999999999987443
No 105
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=99.55 E-value=1.7e-13 Score=130.50 Aligned_cols=172 Identities=16% Similarity=0.140 Sum_probs=113.8
Q ss_pred CceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcC-----CCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCC
Q 004256 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYT-----CRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGG 635 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~-----~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~gG~ 635 (765)
...++|++|+||||.|.+++..+..+..++....+ .+-+++||+|++. +.+..|++.-. .-....|.++||
T Consensus 3 RlP~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~-a~~~~pf~~~~---nF~~p~L~a~Gg 78 (207)
T COG4245 3 RLPCYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGP-ARVIQPFTDAA---NFNPPILTAQGG 78 (207)
T ss_pred CCCEEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCc-ceEEechhhHh---hcCCCceecCCC
Confidence 37899999999999999999988877777664322 3568999999997 99999987511 112335678899
Q ss_pred ChhHHHHHHHHHHHHhhhccC-----CCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhC
Q 004256 636 SPLAHGLSMAVRVGLNAEKSG-----DVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKA 710 (765)
Q Consensus 636 T~l~~aL~~A~~~l~~~~~~~-----~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 710 (765)
|+|++||..|.+++....+.. ...+|+|+|+|||.||.. +.+-......-.+.
T Consensus 79 T~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~----------------------w~~~~~~~~~~~~~ 136 (207)
T COG4245 79 TPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDD----------------------WQAGAALVFQGERR 136 (207)
T ss_pred CchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchH----------------------HHhHHHHhhhcccc
Confidence 999999999999987652221 223899999999998631 11111111111122
Q ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHHHHHhh
Q 004256 711 GMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDALSAL 762 (765)
Q Consensus 711 gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~~~~~~ 762 (765)
...+..+.+|....+...+++|++.-+ ....++...+...++...+++
T Consensus 137 ~k~v~a~~~G~~~ad~~~L~qit~~V~----~~~t~d~~~f~~fFkW~SaSi 184 (207)
T COG4245 137 AKSVAAFSVGVQGADNKTLNQITEKVR----QFLTLDGLQFREFFKWLSASI 184 (207)
T ss_pred cceEEEEEecccccccHHHHHHHHhhc----cccccchHHHHHHHHHHHHHh
Confidence 234555555543336677777775433 334455666777766665554
No 106
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.55 E-value=2.9e-14 Score=158.55 Aligned_cols=222 Identities=20% Similarity=0.237 Sum_probs=143.8
Q ss_pred CCCCCCceeechHHHHHHHHhh----hc---------CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALLLGA----ID---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~----~~---------~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
..+.|++|.|.+..++.|.-.. .. ....+|||+||||||||++|++++..+.
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--------------- 190 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--------------- 190 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC---------------
Confidence 3466789999999888773211 11 2245799999999999999999998753
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEecccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi 233 (765)
.+|+.+.+.......+|. +. .....++..+ ..+|||||||
T Consensus 191 ---------------------------~~~i~v~~~~l~~~~~g~---------~~-~~i~~~f~~a~~~~p~IlfiDEi 233 (389)
T PRK03992 191 ---------------------------ATFIRVVGSELVQKFIGE---------GA-RLVRELFELAREKAPSIIFIDEI 233 (389)
T ss_pred ---------------------------CCEEEeehHHHhHhhccc---------hH-HHHHHHHHHHHhcCCeEEEEech
Confidence 345554433222222331 00 0011122222 3579999999
Q ss_pred ccC-----------CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCC
Q 004256 234 NLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMT 300 (765)
Q Consensus 234 ~~L-----------~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~ 300 (765)
+.+ +.+++..|+.++..-.. +. ...+++||+|||. ...++++|+. ||+..+.+. +|+
T Consensus 234 D~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~-~~-------~~~~v~VI~aTn~-~~~ld~allRpgRfd~~I~v~-~P~ 303 (389)
T PRK03992 234 DAIAAKRTDSGTSGDREVQRTLMQLLAEMDG-FD-------PRGNVKIIAATNR-IDILDPAILRPGRFDRIIEVP-LPD 303 (389)
T ss_pred hhhhcccccCCCCccHHHHHHHHHHHHhccc-cC-------CCCCEEEEEecCC-hhhCCHHHcCCccCceEEEEC-CCC
Confidence 988 45677777777754210 11 1125789999994 4577888885 999988888 467
Q ss_pred HhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Q 004256 301 FEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKC 380 (765)
Q Consensus 301 ~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a 380 (765)
.+.|.+|+.... .......++ .+..++..+ ...+.+....+++.|..
T Consensus 304 ~~~R~~Il~~~~-------------------------~~~~~~~~~-----~~~~la~~t---~g~sgadl~~l~~eA~~ 350 (389)
T PRK03992 304 EEGRLEILKIHT-------------------------RKMNLADDV-----DLEELAELT---EGASGADLKAICTEAGM 350 (389)
T ss_pred HHHHHHHHHHHh-------------------------ccCCCCCcC-----CHHHHHHHc---CCCCHHHHHHHHHHHHH
Confidence 888888875211 001111111 133444433 33366788889999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHhcCCC
Q 004256 381 LAALEGREKVNVDDLKKAVELVILPR 406 (765)
Q Consensus 381 ~A~l~gr~~Vt~edv~~A~~lvl~hR 406 (765)
.|.-+++..|+.+|+.+|+.-+...+
T Consensus 351 ~a~~~~~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 351 FAIRDDRTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred HHHHcCCCCcCHHHHHHHHHHHhccc
Confidence 99989999999999999999876544
No 107
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.50 E-value=6.4e-13 Score=138.65 Aligned_cols=132 Identities=27% Similarity=0.385 Sum_probs=108.9
Q ss_pred CCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCC-----------CCCcchHHHhhhhcce
Q 004256 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-----------EGVVREHLLDRIAINL 293 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~-----------eg~l~~~L~dRf~~~v 293 (765)
.|||||||++.|+-+....|.++|++.- --++|.+||.. +.-++.+|+||+-++
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~--------------aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII- 356 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESEL--------------APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLII- 356 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhccc--------------CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEE-
Confidence 5899999999999999999999998764 23567777862 234778999999654
Q ss_pred eecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHH
Q 004256 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELY 373 (765)
Q Consensus 294 ~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~ 373 (765)
... |+.+++-.+|+.+.. .-.++.++++++++|+.+-... |.|..++
T Consensus 357 ~t~-py~~~EireIi~iRa-----------------------------~ee~i~l~~~Ale~L~~ig~et---SLRYa~q 403 (450)
T COG1224 357 STR-PYSREEIREIIRIRA-----------------------------KEEDIELSDDALEYLTDIGEET---SLRYAVQ 403 (450)
T ss_pred ecC-CCCHHHHHHHHHHhh-----------------------------hhhccccCHHHHHHHHhhchhh---hHHHHHH
Confidence 454 899998888876431 1236899999999999887766 7899999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHhcC
Q 004256 374 AARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (765)
Q Consensus 374 llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~ 404 (765)
++.-|.-+|..+|+..|..+||++|.++-+-
T Consensus 404 LL~pa~iiA~~rg~~~V~~~dVe~a~~lF~D 434 (450)
T COG1224 404 LLTPASIIAKRRGSKRVEVEDVERAKELFLD 434 (450)
T ss_pred hccHHHHHHHHhCCCeeehhHHHHHHHHHhh
Confidence 9999999999999999999999999987553
No 108
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.50 E-value=2.2e-13 Score=165.53 Aligned_cols=215 Identities=24% Similarity=0.297 Sum_probs=137.0
Q ss_pred CceeechHHHHHHH--Hhhh-----cC--CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccc
Q 004256 95 AAVVGQDAIKTALL--LGAI-----DR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (765)
Q Consensus 95 ~~ivG~~~~~~aL~--l~~~-----~~--~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (765)
..|+||+.++..+. +... .+ ..+.+||.||+|||||++|++||..+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~----------------------- 621 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD----------------------- 621 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC-----------------------
Confidence 35899999998882 2221 11 1345999999999999999999998753
Q ss_pred cccccccccCcccccccCCCeEeCCCCC-----cccceeeecccccccccCCCcccCCcee----eccCCeEeccccccC
Q 004256 166 DEKAEYDTAGNLKTQIARSPFVQIPLGV-----TEDRLIGSVDVEESVKTGTTVFQPGLLA----EAHRGVLYIDEINLL 236 (765)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~l~~~~-----~e~~L~G~~d~e~~~~~g~~~~~~Gll~----~A~~GiL~lDEi~~L 236 (765)
...+|+.++++. ....++|... +.. |. ...|.|. .....|||||||+.+
T Consensus 622 ----------------~~~~~i~~d~s~~~~~~~~~~l~g~~~---g~~-g~--~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 622 ----------------DEDAMVRIDMSEYMEKHSVARLIGAPP---GYV-GY--EEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred ----------------CCCcEEEEechhhcccchHHHhcCCCC---Ccc-Cc--ccccHHHHHHHcCCCcEEEEeccccC
Confidence 123444433321 1223333210 000 00 0011111 122459999999999
Q ss_pred CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCC------------------------CCCcchHHHhhhhcc
Q 004256 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------------------------EGVVREHLLDRIAIN 292 (765)
Q Consensus 237 ~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~------------------------eg~l~~~L~dRf~~~ 292 (765)
++.+++.|+++|++|.++- ..|..... .+.+||+|||.. .+.|+|+|++||+.+
T Consensus 680 ~~~v~~~Ll~~l~~g~l~d-~~g~~vd~-rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~I 757 (852)
T TIGR03346 680 HPDVFNVLLQVLDDGRLTD-GQGRTVDF-RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEI 757 (852)
T ss_pred CHHHHHHHHHHHhcCceec-CCCeEEec-CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeE
Confidence 9999999999999998542 12322222 246699999971 234889999999987
Q ss_pred eeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHH
Q 004256 293 LSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAEL 372 (765)
Q Consensus 293 v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i 372 (765)
+ +..|.++++..+|+.+...++... +..+.. .+.++++++++|++.++.... +.|.+.
T Consensus 758 i-vF~PL~~e~l~~I~~l~L~~l~~~------------------l~~~~~--~l~i~~~a~~~L~~~~~~~~~-gaR~L~ 815 (852)
T TIGR03346 758 V-VFHPLGREQIARIVEIQLGRLRKR------------------LAERKI--TLELSDAALDFLAEAGYDPVY-GARPLK 815 (852)
T ss_pred E-ecCCcCHHHHHHHHHHHHHHHHHH------------------HHHCCC--eecCCHHHHHHHHHhCCCCCC-CchhHH
Confidence 6 555999999999999877654321 111211 367888888888877653222 567777
Q ss_pred HHHHHH
Q 004256 373 YAARVA 378 (765)
Q Consensus 373 ~llr~A 378 (765)
.+++..
T Consensus 816 ~~i~~~ 821 (852)
T TIGR03346 816 RAIQRE 821 (852)
T ss_pred HHHHHH
Confidence 766543
No 109
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.49 E-value=2.5e-13 Score=145.98 Aligned_cols=213 Identities=20% Similarity=0.207 Sum_probs=140.1
Q ss_pred CC-ceeechHHHHHHH--Hhhh----cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcc--------hhcc----cccCCC
Q 004256 94 LA-AVVGQDAIKTALL--LGAI----DREIGGIAISGRRGTAKTVMARGLHAILPPIE--------VVVG----SIANAD 154 (765)
Q Consensus 94 f~-~ivG~~~~~~aL~--l~~~----~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~--------~~~~----~~~~~~ 154 (765)
|. +++|+++++..+. +... ......++|.|||||||||+|++|+..+.... .+.+ ||++-+
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~ 128 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHED 128 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccC
Confidence 45 7999999888872 2221 12235589999999999999999999886531 1344 877766
Q ss_pred CCC---------------------CCcccccccccccccccCccccc-ccCCCe--------EeCCCC----Ccccceee
Q 004256 155 PTC---------------------PDEWEDGLDEKAEYDTAGNLKTQ-IARSPF--------VQIPLG----VTEDRLIG 200 (765)
Q Consensus 155 ~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------v~l~~~----~~e~~L~G 200 (765)
|-. ...+|..|+.++...-.|.+... .....| ...+++ -....|+|
T Consensus 129 Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~~L~G 208 (361)
T smart00763 129 PLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDISELTG 208 (361)
T ss_pred CcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHHHHhc
Confidence 631 12235566655421112222110 000011 011111 13347889
Q ss_pred ecccccccccC---CCccc-CCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC
Q 004256 201 SVDVEESVKTG---TTVFQ-PGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP 276 (765)
Q Consensus 201 ~~d~e~~~~~g---~~~~~-~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~ 276 (765)
.+|+.+....+ ...+. .|.|..||+|++.++|+..++.+.+..||.+++++.+.+. |.....|.+.+||++||+
T Consensus 209 ~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~--~~~~~~~~d~liia~sNe 286 (361)
T smart00763 209 KVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIAHSNE 286 (361)
T ss_pred ccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecC--CcccccccceEEEEeCCH
Confidence 88877654211 12333 5999999999999999999999999999999999995543 444467888999999998
Q ss_pred CC------CCcchHHHhhhhcceeecCCCCHhhHHHHHH
Q 004256 277 EE------GVVREHLLDRIAINLSADLPMTFEDRVAAVG 309 (765)
Q Consensus 277 ~e------g~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~ 309 (765)
.+ ++..++|+|||..+ .+.++........|.+
T Consensus 287 ~e~~~~~~~k~~eaf~dR~~~i-~vpY~l~~~~E~~Iy~ 324 (361)
T smart00763 287 SEWQRFKSNKKNEALLDRIIKV-KVPYCLRVSEEAQIYE 324 (361)
T ss_pred HHHhhhhccccchhhhhceEEE-eCCCcCCHHHHHHHHH
Confidence 64 45679999999854 7876666665555543
No 110
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.48 E-value=1e-13 Score=144.35 Aligned_cols=223 Identities=19% Similarity=0.228 Sum_probs=146.5
Q ss_pred CCCCCCceeechHHHH--HHHHhhh-cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccc
Q 004256 90 QFFPLAAVVGQDAIKT--ALLLGAI-DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~--aL~l~~~-~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (765)
++..+.+.|||+.+.- .++-..+ ......++|+||||||||+|||.|+.-+..
T Consensus 133 RPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~------------------------ 188 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKK------------------------ 188 (554)
T ss_pred CcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCC------------------------
Confidence 3445667777776432 2222222 123467999999999999999999987642
Q ss_pred ccccccccCcccccccCCCeEeCCCCCc-ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHH
Q 004256 167 EKAEYDTAGNLKTQIARSPFVQIPLGVT-EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (765)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~-e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll 245 (765)
....||.+....+ ..++- .+++... .-....-..-|||||||+++....|+.+|
T Consensus 189 ---------------~SyrfvelSAt~a~t~dvR-------~ife~aq---~~~~l~krkTilFiDEiHRFNksQQD~fL 243 (554)
T KOG2028|consen 189 ---------------HSYRFVELSATNAKTNDVR-------DIFEQAQ---NEKSLTKRKTILFIDEIHRFNKSQQDTFL 243 (554)
T ss_pred ---------------CceEEEEEeccccchHHHH-------HHHHHHH---HHHhhhcceeEEEeHHhhhhhhhhhhccc
Confidence 2345666543321 11111 1111110 00011113469999999999999999999
Q ss_pred HHHHcCceEEEeCCeeEEeeCceEEEEeecCCC-CCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcc
Q 004256 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (765)
Q Consensus 246 ~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e-g~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~ 324 (765)
-.++.|. +.+|++|...+ -.+..+|+.|+-++| +. +..++...-|+.+....+.+..
T Consensus 244 P~VE~G~---------------I~lIGATTENPSFqln~aLlSRC~Vfv-Le-kL~~n~v~~iL~raia~l~dse----- 301 (554)
T KOG2028|consen 244 PHVENGD---------------ITLIGATTENPSFQLNAALLSRCRVFV-LE-KLPVNAVVTILMRAIASLGDSE----- 301 (554)
T ss_pred ceeccCc---------------eEEEecccCCCccchhHHHHhccceeE-ec-cCCHHHHHHHHHHHHHhhcccc-----
Confidence 9998886 57889888554 367899999998875 65 6677777777766554433221
Q ss_pred ccccCcHHHHHHHHHhcc-cCC--ccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcC----CCCCCHHHHHH
Q 004256 325 VEEETDLAKTQIILAREY-LKD--VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEG----REKVNVDDLKK 397 (765)
Q Consensus 325 ~~~~~~~~~~~il~a~~~-~~n--v~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~g----r~~Vt~edv~~ 397 (765)
...| ++| +.+.+.++++++.++.. ..|..++.++.+..++-.+. +..++.+|+++
T Consensus 302 --------------r~~~~l~n~s~~ve~siidyla~lsdG----DaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke 363 (554)
T KOG2028|consen 302 --------------RPTDPLPNSSMFVEDSIIDYLAYLSDG----DARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKE 363 (554)
T ss_pred --------------ccCCCCCCcchhhhHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHH
Confidence 1123 233 57899999999887643 47999999999866665543 35789999999
Q ss_pred HHHH
Q 004256 398 AVEL 401 (765)
Q Consensus 398 A~~l 401 (765)
.+..
T Consensus 364 ~lq~ 367 (554)
T KOG2028|consen 364 GLQR 367 (554)
T ss_pred HHhh
Confidence 9873
No 111
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.48 E-value=1.6e-12 Score=124.74 Aligned_cols=152 Identities=27% Similarity=0.408 Sum_probs=120.5
Q ss_pred eEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcC--CCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhhcCC--CCCCC
Q 004256 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLP--CGGGS 636 (765)
Q Consensus 563 ~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~--~~d~v~lv~F~~~~a~~~~p~t~--~~~~~~~~l~~l~--~gG~T 636 (765)
+++||||.|+||...++..++.++..++..... ..++++++.|++. .....+++. +...+...++.+. .+|+|
T Consensus 2 ~v~~viD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 80 (161)
T cd00198 2 DIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSN-ARVVLPLTTDTDKADLLEAIDALKKGLGGGT 80 (161)
T ss_pred cEEEEEeCCCCcCcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCc-cceeecccccCCHHHHHHHHHhcccCCCCCc
Confidence 689999999999668999999988888874433 4899999999987 777888876 7888889999887 78899
Q ss_pred hhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEE
Q 004256 637 PLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLV 716 (765)
Q Consensus 637 ~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~v 716 (765)
++..++..+.+.+..... ......||++|||.++.+. .......+.+++.++.+++
T Consensus 81 ~~~~al~~~~~~~~~~~~--~~~~~~lvvitDg~~~~~~----------------------~~~~~~~~~~~~~~v~v~~ 136 (161)
T cd00198 81 NIGAALRLALELLKSAKR--PNARRVIILLTDGEPNDGP----------------------ELLAEAARELRKLGITVYT 136 (161)
T ss_pred cHHHHHHHHHHHhcccCC--CCCceEEEEEeCCCCCCCc----------------------chhHHHHHHHHHcCCEEEE
Confidence 999999999998765431 2235589999999976431 1335566677778999999
Q ss_pred EeCCCCCCCHHHHHHHHHHc-CCeE
Q 004256 717 IDTENKFVSTGFAKEIARVA-QGKY 740 (765)
Q Consensus 717 ig~~~~~~~~~~l~~LA~~~-gG~y 740 (765)
|+++.. .+...++.|+..+ +|.|
T Consensus 137 v~~g~~-~~~~~l~~l~~~~~~~~~ 160 (161)
T cd00198 137 IGIGDD-ANEDELKEIADKTTGGAV 160 (161)
T ss_pred EEcCCC-CCHHHHHHHhcccccccc
Confidence 999972 3678999999887 4443
No 112
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=2.6e-13 Score=151.21 Aligned_cols=232 Identities=21% Similarity=0.214 Sum_probs=140.0
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
++|..|++||||+.++..|..+......+| +||+||+|||||++||.+++.+. |.......+|..|..
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln-----------ce~~~~~~pCg~C~s 80 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN-----------CENPIGNEPCNECTS 80 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------cccccCccccCCCcH
Confidence 567789999999999998865544444454 89999999999999999999763 432222233333322
Q ss_pred cccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~ 247 (765)
-..... + ....|+.+..... .| +|.-+.+.... ...+ .....-|+||||++.|+.+.++.||..
T Consensus 81 C~~i~~-g------~~~dviEIdaas~----~g-Vd~IReL~e~l-~~~p---~~g~~KV~IIDEah~Ls~~A~NALLKt 144 (484)
T PRK14956 81 CLEITK-G------ISSDVLEIDAASN----RG-IENIRELRDNV-KFAP---MGGKYKVYIIDEVHMLTDQSFNALLKT 144 (484)
T ss_pred HHHHHc-c------CCccceeechhhc----cc-HHHHHHHHHHH-Hhhh---hcCCCEEEEEechhhcCHHHHHHHHHH
Confidence 100000 0 1122333322110 01 00001110000 0001 011234999999999999999999999
Q ss_pred HHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccc
Q 004256 248 LTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (765)
Q Consensus 248 l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~ 327 (765)
|++- |..+++|.+|| +...+.+.+.+|+..+ .+. +...+ +|..+..+
T Consensus 145 LEEP-------------p~~viFILaTt-e~~kI~~TI~SRCq~~-~f~-~ls~~---~i~~~L~~-------------- 191 (484)
T PRK14956 145 LEEP-------------PAHIVFILATT-EFHKIPETILSRCQDF-IFK-KVPLS---VLQDYSEK-------------- 191 (484)
T ss_pred hhcC-------------CCceEEEeecC-ChhhccHHHHhhhhee-eec-CCCHH---HHHHHHHH--------------
Confidence 9863 23567777777 5678889999998654 454 33333 23221111
Q ss_pred cCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 328 ~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
++.. .++.++++++..|+..+ ++ +.|..+.++..+.+. . ...|+.++|.+.+.
T Consensus 192 --------i~~~----Egi~~e~eAL~~Ia~~S---~G-d~RdAL~lLeq~i~~---~-~~~it~~~V~~~lg 244 (484)
T PRK14956 192 --------LCKI----ENVQYDQEGLFWIAKKG---DG-SVRDMLSFMEQAIVF---T-DSKLTGVKIRKMIG 244 (484)
T ss_pred --------HHHH----cCCCCCHHHHHHHHHHc---CC-hHHHHHHHHHHHHHh---C-CCCcCHHHHHHHhC
Confidence 1111 25889999999887654 23 689999999776543 2 23699999988774
No 113
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=4.8e-13 Score=154.08 Aligned_cols=227 Identities=19% Similarity=0.215 Sum_probs=133.7
Q ss_pred cCCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccc---c
Q 004256 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE---D 163 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~ 163 (765)
|+++..|++||||+.+++.|.-........| +||+|++|||||++|+.|++.+. |........| .
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-----------Ce~~~~~~PCG~C~ 77 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-----------CETGVTSQPCGVCR 77 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-----------CccCCCCCCCcccH
Confidence 3677889999999999999854444334444 69999999999999999999763 4322222233 3
Q ss_pred cccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
.|..-.. + .-..++.++... . .|.-++.. +... ....+ ...+..|+||||++.|+.+.++.
T Consensus 78 sCr~I~~----G------~h~DviEIDAas--~--rgVDdIRe-LIe~-a~~~P---~~gr~KVIIIDEah~LT~~A~NA 138 (830)
T PRK07003 78 ACREIDE----G------RFVDYVEMDAAS--N--RGVDEMAA-LLER-AVYAP---VDARFKVYMIDEVHMLTNHAFNA 138 (830)
T ss_pred HHHHHhc----C------CCceEEEecccc--c--ccHHHHHH-HHHH-HHhcc---ccCCceEEEEeChhhCCHHHHHH
Confidence 3433110 0 011234443221 0 11100000 0000 00011 12345699999999999999999
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhc
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~ 323 (765)
||..|++-. .+++||.++| +...+.+.+++|+-.+ .+. +...++ |..+...
T Consensus 139 LLKtLEEPP-------------~~v~FILaTt-d~~KIp~TIrSRCq~f-~Fk-~Ls~ee---Iv~~L~~---------- 189 (830)
T PRK07003 139 MLKTLEEPP-------------PHVKFILATT-DPQKIPVTVLSRCLQF-NLK-QMPAGH---IVSHLER---------- 189 (830)
T ss_pred HHHHHHhcC-------------CCeEEEEEEC-ChhhccchhhhheEEE-ecC-CcCHHH---HHHHHHH----------
Confidence 999998742 3567777777 5677889999999543 554 333333 3322211
Q ss_pred cccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 004256 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (765)
Q Consensus 324 ~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~ 397 (765)
++.. .++.++++.+..|+..+. . +.|..++++..+.++. ...|+.++|..
T Consensus 190 ------------Il~~----EgI~id~eAL~lIA~~A~---G-smRdALsLLdQAia~~----~~~It~~~V~~ 239 (830)
T PRK07003 190 ------------ILGE----ERIAFEPQALRLLARAAQ---G-SMRDALSLTDQAIAYS----ANEVTETAVSG 239 (830)
T ss_pred ------------HHHH----cCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 1111 257788888888766542 2 5688888876655332 23466665543
No 114
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.48 E-value=2.2e-13 Score=154.04 Aligned_cols=216 Identities=20% Similarity=0.200 Sum_probs=142.0
Q ss_pred CCCCCceeechHHHHHHHH--hhh--------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCc
Q 004256 91 FFPLAAVVGQDAIKTALLL--GAI--------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~l--~~~--------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~ 160 (765)
...|++|.|.+.+|..|.. ..+ -+...+|||+||||||||++|++|+..+
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~-------------------- 283 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW-------------------- 283 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--------------------
Confidence 4568899999998887731 111 1235679999999999999999999875
Q ss_pred ccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCcee---eccCCeEeccccccCC
Q 004256 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYIDEINLLD 237 (765)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~---~A~~GiL~lDEi~~L~ 237 (765)
+.||+.+.++...+.++|.- ++. ..-++. ....+|||||||+.+-
T Consensus 284 ----------------------~~~~~~l~~~~l~~~~vGes--e~~--------l~~~f~~A~~~~P~IL~IDEID~~~ 331 (489)
T CHL00195 284 ----------------------QLPLLRLDVGKLFGGIVGES--ESR--------MRQMIRIAEALSPCILWIDEIDKAF 331 (489)
T ss_pred ----------------------CCCEEEEEhHHhcccccChH--HHH--------HHHHHHHHHhcCCcEEEehhhhhhh
Confidence 35677766554334444420 000 001111 2246799999998752
Q ss_pred H------------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCCHhh
Q 004256 238 E------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFED 303 (765)
Q Consensus 238 ~------------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~~e~ 303 (765)
. .+...|+..|++.. ..+.+|+||| ....++++|+. ||+..+.+.. |+.++
T Consensus 332 ~~~~~~~d~~~~~rvl~~lL~~l~~~~-------------~~V~vIaTTN-~~~~Ld~allR~GRFD~~i~v~l-P~~~e 396 (489)
T CHL00195 332 SNSESKGDSGTTNRVLATFITWLSEKK-------------SPVFVVATAN-NIDLLPLEILRKGRFDEIFFLDL-PSLEE 396 (489)
T ss_pred ccccCCCCchHHHHHHHHHHHHHhcCC-------------CceEEEEecC-ChhhCCHHHhCCCcCCeEEEeCC-cCHHH
Confidence 2 24456677776432 2578999999 66788999986 9999988886 47888
Q ss_pred HHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Q 004256 304 RVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAA 383 (765)
Q Consensus 304 r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~ 383 (765)
|.+|......- . -+. ...+..++.++..+..+ |.+....++..|...|.
T Consensus 397 R~~Il~~~l~~---~-----------------------~~~--~~~~~dl~~La~~T~Gf---SGAdI~~lv~eA~~~A~ 445 (489)
T CHL00195 397 REKIFKIHLQK---F-----------------------RPK--SWKKYDIKKLSKLSNKF---SGAEIEQSIIEAMYIAF 445 (489)
T ss_pred HHHHHHHHHhh---c-----------------------CCC--cccccCHHHHHhhcCCC---CHHHHHHHHHHHHHHHH
Confidence 88887642211 0 000 01122245555444333 66778888888888888
Q ss_pred HcCCCCCCHHHHHHHHHHhcCC
Q 004256 384 LEGREKVNVDDLKKAVELVILP 405 (765)
Q Consensus 384 l~gr~~Vt~edv~~A~~lvl~h 405 (765)
.+++ .++.+|+..|+.-+.+.
T Consensus 446 ~~~~-~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 446 YEKR-EFTTDDILLALKQFIPL 466 (489)
T ss_pred HcCC-CcCHHHHHHHHHhcCCC
Confidence 7765 68999999999876553
No 115
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.48 E-value=3e-13 Score=151.95 Aligned_cols=208 Identities=24% Similarity=0.287 Sum_probs=131.7
Q ss_pred CCCCCCCceeechHHHHH---HHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccc
Q 004256 89 RQFFPLAAVVGQDAIKTA---LLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~a---L~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (765)
.++..|+++|||+.++.. |.-........+++|+||||||||++|+.|++.+.
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~------------------------ 61 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD------------------------ 61 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC------------------------
Confidence 356678899999997544 43222334456899999999999999999998653
Q ss_pred cccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHH
Q 004256 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (765)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll 245 (765)
.+|+.+..... |.-++.. +..... .......+.+||||||+++....|+.|+
T Consensus 62 ------------------~~~~~l~a~~~-----~~~~ir~-ii~~~~----~~~~~g~~~vL~IDEi~~l~~~~q~~LL 113 (413)
T PRK13342 62 ------------------APFEALSAVTS-----GVKDLRE-VIEEAR----QRRSAGRRTILFIDEIHRFNKAQQDALL 113 (413)
T ss_pred ------------------CCEEEEecccc-----cHHHHHH-HHHHHH----HhhhcCCceEEEEechhhhCHHHHHHHH
Confidence 23433332211 0000000 000000 0001124679999999999999999999
Q ss_pred HHHHcCceEEEeCCeeEEeeCceEEEEeecCCC-CCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcc
Q 004256 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (765)
Q Consensus 246 ~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e-g~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~ 324 (765)
..++++. +++|++++... ..+.+.|++|+.++ .+. |+..+. +..+...+...
T Consensus 114 ~~le~~~---------------iilI~att~n~~~~l~~aL~SR~~~~-~~~-~ls~e~---i~~lL~~~l~~------- 166 (413)
T PRK13342 114 PHVEDGT---------------ITLIGATTENPSFEVNPALLSRAQVF-ELK-PLSEED---IEQLLKRALED------- 166 (413)
T ss_pred HHhhcCc---------------EEEEEeCCCChhhhccHHHhccceee-EeC-CCCHHH---HHHHHHHHHHH-------
Confidence 9998765 45676655332 36789999999554 565 444443 33332222110
Q ss_pred ccccCcHHHHHHHHHhcccCC-ccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 004256 325 VEEETDLAKTQIILAREYLKD-VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (765)
Q Consensus 325 ~~~~~~~~~~~il~a~~~~~n-v~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~l 401 (765)
.. .. +.+++++++.++.++ +. +.|..++++..+... ...|+.+++..++..
T Consensus 167 ---------------~~--~~~i~i~~~al~~l~~~s---~G-d~R~aln~Le~~~~~-----~~~It~~~v~~~~~~ 218 (413)
T PRK13342 167 ---------------KE--RGLVELDDEALDALARLA---NG-DARRALNLLELAALG-----VDSITLELLEEALQK 218 (413)
T ss_pred ---------------hh--cCCCCCCHHHHHHHHHhC---CC-CHHHHHHHHHHHHHc-----cCCCCHHHHHHHHhh
Confidence 00 02 478899999998776 22 578888888876644 457999999988764
No 116
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.48 E-value=1.3e-13 Score=158.49 Aligned_cols=216 Identities=21% Similarity=0.282 Sum_probs=135.9
Q ss_pred CCCCCCceeechHHHHHHH-Hhh-h----------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALL-LGA-I----------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~-l~~-~----------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~ 157 (765)
....|++|+|.+.++..+. +.. + .....++||+||||||||++|++|+..+
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------------- 112 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------------- 112 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-----------------
Confidence 3467899999999888762 111 1 1234579999999999999999999864
Q ss_pred CCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEeccccc
Q 004256 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEIN 234 (765)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~ 234 (765)
..||+.++.....+...|. +.. ....++..| ..+|||||||+
T Consensus 113 -------------------------~~~~~~i~~~~~~~~~~g~---------~~~-~l~~~f~~a~~~~p~Il~iDEid 157 (495)
T TIGR01241 113 -------------------------GVPFFSISGSDFVEMFVGV---------GAS-RVRDLFEQAKKNAPCIIFIDEID 157 (495)
T ss_pred -------------------------CCCeeeccHHHHHHHHhcc---------cHH-HHHHHHHHHHhcCCCEEEEechh
Confidence 2355554433222222221 000 001122222 34799999998
Q ss_pred cCCH--------------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCC
Q 004256 235 LLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (765)
Q Consensus 235 ~L~~--------------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p 298 (765)
.+.. .+++.||..|+.-. . ...++||+||| ....++++|+. ||+..+.+..
T Consensus 158 ~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~---~--------~~~v~vI~aTn-~~~~ld~al~r~gRfd~~i~i~~- 224 (495)
T TIGR01241 158 AVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG---T--------NTGVIVIAATN-RPDVLDPALLRPGRFDRQVVVDL- 224 (495)
T ss_pred hhhhccccCcCCccHHHHHHHHHHHhhhcccc---C--------CCCeEEEEecC-ChhhcCHHHhcCCcceEEEEcCC-
Confidence 8742 23445555554211 1 12478999999 45677888886 9999888885
Q ss_pred CCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccC-CHHHHHHHHHHHHhCCCCCCChHHHHHHH
Q 004256 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAI-GREQLKYLVMEALRGGCQGHRAELYAARV 377 (765)
Q Consensus 299 ~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i-~~~~l~~l~~~a~~~g~~s~Ra~i~llr~ 377 (765)
|+.+.|.+|+..... +..+ ++..+..++..+ ...+.+....+++.
T Consensus 225 Pd~~~R~~il~~~l~-------------------------------~~~~~~~~~l~~la~~t---~G~sgadl~~l~~e 270 (495)
T TIGR01241 225 PDIKGREEILKVHAK-------------------------------NKKLAPDVDLKAVARRT---PGFSGADLANLLNE 270 (495)
T ss_pred CCHHHHHHHHHHHHh-------------------------------cCCCCcchhHHHHHHhC---CCCCHHHHHHHHHH
Confidence 577888888763211 0111 112233444333 33366777888888
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcC
Q 004256 378 AKCLAALEGREKVNVDDLKKAVELVIL 404 (765)
Q Consensus 378 A~a~A~l~gr~~Vt~edv~~A~~lvl~ 404 (765)
|...|...+...|+.+|+..|+..+..
T Consensus 271 A~~~a~~~~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 271 AALLAARKNKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 887888888889999999999987654
No 117
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.47 E-value=6e-13 Score=157.75 Aligned_cols=210 Identities=21% Similarity=0.255 Sum_probs=134.3
Q ss_pred ceeechHHHHHHHHhhh---------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccc
Q 004256 96 AVVGQDAIKTALLLGAI---------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (765)
Q Consensus 96 ~ivG~~~~~~aL~l~~~---------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (765)
.|+||+.+++.|.-+.. +.-.+++||.||+|||||.+|+.|+..+.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~------------------------- 513 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG------------------------- 513 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC-------------------------
Confidence 58999999988822111 11135699999999999999999999874
Q ss_pred ccccccccCcccccccCCCeEeCCCCC-----cccceeeecccccccccCCCcccCCceee----ccCCeEeccccccCC
Q 004256 167 EKAEYDTAGNLKTQIARSPFVQIPLGV-----TEDRLIGSVDVEESVKTGTTVFQPGLLAE----AHRGVLYIDEINLLD 237 (765)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~l~~~~-----~e~~L~G~~d~e~~~~~g~~~~~~Gll~~----A~~GiL~lDEi~~L~ 237 (765)
.+|+.++++. ...+|+|.-. + +.| ....|.|.. ...+|||||||+.++
T Consensus 514 -----------------~~~i~id~se~~~~~~~~~LiG~~~---g-yvg--~~~~g~L~~~v~~~p~sVlllDEieka~ 570 (758)
T PRK11034 514 -----------------IELLRFDMSEYMERHTVSRLIGAPP---G-YVG--FDQGGLLTDAVIKHPHAVLLLDEIEKAH 570 (758)
T ss_pred -----------------CCcEEeechhhcccccHHHHcCCCC---C-ccc--ccccchHHHHHHhCCCcEEEeccHhhhh
Confidence 1233222221 1234555210 0 001 011233332 246899999999999
Q ss_pred HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCC------------------------CCCcchHHHhhhhcce
Q 004256 238 EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------------------------EGVVREHLLDRIAINL 293 (765)
Q Consensus 238 ~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~------------------------eg~l~~~L~dRf~~~v 293 (765)
+++++.|+++|++|.++- ..|.. ..-.++++|.|||.. ...|+|+|+.||+.+|
T Consensus 571 ~~v~~~LLq~ld~G~ltd-~~g~~-vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii 648 (758)
T PRK11034 571 PDVFNLLLQVMDNGTLTD-NNGRK-ADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNII 648 (758)
T ss_pred HHHHHHHHHHHhcCeeec-CCCce-ecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEE
Confidence 999999999999998542 12222 112356799999942 0238899999999876
Q ss_pred eecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHH
Q 004256 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELY 373 (765)
Q Consensus 294 ~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~ 373 (765)
.+. |.+.+....|+.+. +.... ..+..+. -.+.++++++++|++.+..... |.|.+..
T Consensus 649 ~f~-~L~~~~l~~I~~~~---l~~~~---------------~~l~~~~--i~l~~~~~~~~~l~~~~~~~~~-GAR~l~r 706 (758)
T PRK11034 649 WFD-HLSTDVIHQVVDKF---IVELQ---------------AQLDQKG--VSLEVSQEARDWLAEKGYDRAM-GARPMAR 706 (758)
T ss_pred EcC-CCCHHHHHHHHHHH---HHHHH---------------HHHHHCC--CCceECHHHHHHHHHhCCCCCC-CCchHHH
Confidence 555 66777766666532 22211 1122222 3589999999999987766544 7788877
Q ss_pred HHHH
Q 004256 374 AARV 377 (765)
Q Consensus 374 llr~ 377 (765)
+++.
T Consensus 707 ~i~~ 710 (758)
T PRK11034 707 VIQD 710 (758)
T ss_pred HHHH
Confidence 6654
No 118
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.47 E-value=1.1e-13 Score=154.45 Aligned_cols=220 Identities=19% Similarity=0.234 Sum_probs=137.6
Q ss_pred CCCCceeechHHHHHHHHhh----hc---------CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCC
Q 004256 92 FPLAAVVGQDAIKTALLLGA----ID---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~----~~---------~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~ 158 (765)
..|.+|.|.+..++.+.-.. .. ....+|||+||||||||++||+++..+.
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~----------------- 242 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS----------------- 242 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC-----------------
Confidence 46788999998887762111 11 1235799999999999999999998764
Q ss_pred CcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEecccccc
Q 004256 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINL 235 (765)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~~ 235 (765)
.+|+.+........++|. +. .....++..| ...|||||||+.
T Consensus 243 -------------------------~~fi~V~~seL~~k~~Ge---------~~-~~vr~lF~~A~~~~P~ILfIDEID~ 287 (438)
T PTZ00361 243 -------------------------ATFLRVVGSELIQKYLGD---------GP-KLVRELFRVAEENAPSIVFIDEIDA 287 (438)
T ss_pred -------------------------CCEEEEecchhhhhhcch---------HH-HHHHHHHHHHHhCCCcEEeHHHHHH
Confidence 234443222111222221 00 0011122222 346899999987
Q ss_pred CC-----------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCCHh
Q 004256 236 LD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFE 302 (765)
Q Consensus 236 L~-----------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~~e 302 (765)
+. .+++..|+.+|..-.. +. ...++.||++|| ....++++|+. ||+..+.+. +|+.+
T Consensus 288 l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg-~~-------~~~~V~VI~ATN-r~d~LDpaLlRpGRfd~~I~~~-~Pd~~ 357 (438)
T PTZ00361 288 IGTKRYDATSGGEKEIQRTMLELLNQLDG-FD-------SRGDVKVIMATN-RIESLDPALIRPGRIDRKIEFP-NPDEK 357 (438)
T ss_pred HhccCCCCCCcccHHHHHHHHHHHHHHhh-hc-------ccCCeEEEEecC-ChHHhhHHhccCCeeEEEEEeC-CCCHH
Confidence 62 3456666666543110 10 123578999999 45677888885 999988887 56888
Q ss_pred hHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHH-HHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Q 004256 303 DRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (765)
Q Consensus 303 ~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~-~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~ 381 (765)
.|.+|+..... ...+.++ .++.++..+..+ +......+++.|...
T Consensus 358 ~R~~Il~~~~~-------------------------------k~~l~~dvdl~~la~~t~g~---sgAdI~~i~~eA~~~ 403 (438)
T PTZ00361 358 TKRRIFEIHTS-------------------------------KMTLAEDVDLEEFIMAKDEL---SGADIKAICTEAGLL 403 (438)
T ss_pred HHHHHHHHHHh-------------------------------cCCCCcCcCHHHHHHhcCCC---CHHHHHHHHHHHHHH
Confidence 88888763210 0111111 123444333332 556677788999999
Q ss_pred HHHcCCCCCCHHHHHHHHHHhcCCCc
Q 004256 382 AALEGREKVNVDDLKKAVELVILPRS 407 (765)
Q Consensus 382 A~l~gr~~Vt~edv~~A~~lvl~hR~ 407 (765)
|.-+++..|+.+|+..|+.-|+.-+.
T Consensus 404 Alr~~r~~Vt~~D~~~A~~~v~~~~~ 429 (438)
T PTZ00361 404 ALRERRMKVTQADFRKAKEKVLYRKK 429 (438)
T ss_pred HHHhcCCccCHHHHHHHHHHHHhhcc
Confidence 99999999999999999999866543
No 119
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=99.47 E-value=4.8e-13 Score=131.96 Aligned_cols=158 Identities=25% Similarity=0.368 Sum_probs=117.4
Q ss_pred eEEEEEeCCCCCCchhHHHHHHHHHHHHHhh--cCCCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHh-hcC-CCCCCC
Q 004256 563 LVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRL-ERL-PCGGGS 636 (765)
Q Consensus 563 ~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~--~~~~d~v~lv~F~~~~a~~~~p~t~--~~~~~~~~l-~~l-~~gG~T 636 (765)
+|+||||.|+||...++..+|.++..++... .....+|++|.|++. ...+++++. +...+...+ ..+ ..+|+|
T Consensus 1 DivflvD~S~sm~~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~t 79 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGDNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDS-ARVLFSLTDYQSKNDLLNAINDSIPSSGGGT 79 (178)
T ss_dssp EEEEEEE-STTSCHHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSS-EEEEEETTSHSSHHHHHHHHHTTGGCCBSSB
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHHhhhccccccccceeeeecc-cccccccccccccccccccccccccccchhh
Confidence 5899999999999888999999999999854 678899999999999 788888875 567777776 554 467899
Q ss_pred hhHHHHHHHHHHHHhh-hccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHh-CCCEE
Q 004256 637 PLAHGLSMAVRVGLNA-EKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYK-AGMSL 714 (765)
Q Consensus 637 ~l~~aL~~A~~~l~~~-~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~gi~~ 714 (765)
+++.||..|.+.+... ....+..+.+|||+|||.++.+.. ....+..+.+ .||.+
T Consensus 80 ~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~-----------------------~~~~~~~~~~~~~i~~ 136 (178)
T PF00092_consen 80 NLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDS-----------------------PSEEAANLKKSNGIKV 136 (178)
T ss_dssp -HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSG-----------------------HHHHHHHHHHHCTEEE
T ss_pred hHHHHHhhhhhcccccccccccccccceEEEEeecccCCcc-----------------------hHHHHHHHHHhcCcEE
Confidence 9999999999998764 111223466899999999874211 1222333333 69999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHc--CCeEEEcCCC
Q 004256 715 LVIDTENKFVSTGFAKEIARVA--QGKYYYLPNA 746 (765)
Q Consensus 715 ~vig~~~~~~~~~~l~~LA~~~--gG~y~~~~~~ 746 (765)
++||.+ ..+...++.||... ++.++++.+.
T Consensus 137 ~~ig~~--~~~~~~l~~la~~~~~~~~~~~~~~~ 168 (178)
T PF00092_consen 137 IAIGID--NADNEELRELASCPTSEGHVFYLADF 168 (178)
T ss_dssp EEEEES--CCHHHHHHHHSHSSTCHHHEEEESSH
T ss_pred EEEecC--cCCHHHHHHHhCCCCCCCcEEEcCCH
Confidence 999992 23788999999764 3567777644
No 120
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.47 E-value=1.3e-12 Score=137.35 Aligned_cols=224 Identities=21% Similarity=0.222 Sum_probs=156.4
Q ss_pred cccCCCCCCCCccchhHHHHhcCCchhhhhhcccccCceeEEeccchhhhhhhccCCceEEEEEeCCCCCCc-hhHHHHH
Q 004256 505 IKPMLPKGPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMAL-NRMQNAK 583 (765)
Q Consensus 505 ~r~~~~~~~~~~id~~~Tlraaap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~~~~~~vv~vvD~SgSM~~-~rl~~ak 583 (765)
.|+|.-++ ...+|+.+||..+.- |.... ....+.|..+|+.+...+.++...++++||+|-||.. .|+.-+|
T Consensus 414 ~rpY~FGD-T~pwDvTrTltNai~----r~a~~--~~E~~ri~~~Dvev~etE~rt~aAvallvDtS~SM~~eGRw~PmK 486 (652)
T COG4867 414 TRPYQFGD-TEPWDVTRTLTNAVL----RQAAA--VHERIRITVEDVEVAETETRTQAAVALLVDTSFSMVMEGRWLPMK 486 (652)
T ss_pred cCCcccCC-CCccHHHHHHHHHHH----Hhhhh--hhhhhhccccceeehhhhhhcccceeeeeeccHHHHHhccCCchH
Confidence 37777555 668999999987752 21111 1124889999999999999999999999999999963 4666666
Q ss_pred HHHHHH--HHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCC--CCChhHHHHHHHHHHHHhhhccCCCC
Q 004256 584 GAALKL--LAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCG--GGSPLAHGLSMAVRVGLNAEKSGDVG 659 (765)
Q Consensus 584 ~a~~~l--l~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~g--G~T~l~~aL~~A~~~l~~~~~~~~~~ 659 (765)
+.++.+ |.....++|.+.+|.|+.. ++.+ | ...|..+++- -+||+.+||..|-+.+++... .
T Consensus 487 QtALALhHLv~TrfrGD~l~~i~Fgr~-A~~v-~--------v~eLt~l~~v~eqgTNlhhaL~LA~r~l~Rh~~----~ 552 (652)
T COG4867 487 QTALALHHLVCTRFRGDALQIIAFGRY-ARTV-T--------AAELTGLAGVYEQGTNLHHALALAGRHLRRHAG----A 552 (652)
T ss_pred HHHHHHHHHHHhcCCCcceEEEeccch-hccc-C--------HHHHhcCCCccccccchHHHHHHHHHHHHhCcc----c
Confidence 665554 3345678999999999887 4432 2 1234555532 489999999999888876443 2
Q ss_pred ceEEEEEeCCCCCCCCCCCCC--cccC-CCCCCCCCchhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHc
Q 004256 660 RIMIVAITDGRANISLKRSTD--PEAT-ASDAPRPSSQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVA 736 (765)
Q Consensus 660 ~~~vvliTDG~~n~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~ 736 (765)
.+.|+++|||.|+..+....| .+++ ++|| +.......-...+++.|+.+.++-.+.+.--..|+.++|+..
T Consensus 553 ~~~il~vTDGePtAhle~~DG~~~~f~yp~DP------~t~~~Tvr~~d~~~r~G~q~t~FrLg~DpgL~~Fv~qva~rv 626 (652)
T COG4867 553 QPVVLVVTDGEPTAHLEDGDGTSVFFDYPPDP------RTIAHTVRGFDDMARLGAQVTIFRLGSDPGLARFIDQVARRV 626 (652)
T ss_pred CceEEEEeCCCccccccCCCCceEecCCCCCh------hHHHHHHHHHHHHHhccceeeEEeecCCHhHHHHHHHHHHHh
Confidence 457899999999987764323 1222 4454 344444555566788998888887776544578999999999
Q ss_pred CCeEEEc--CCCChHHHHHHH
Q 004256 737 QGKYYYL--PNASDAVISATT 755 (765)
Q Consensus 737 gG~y~~~--~~~~~~~l~~~~ 755 (765)
+|+.|.- +++.+..+.+.+
T Consensus 627 ~G~vv~pdldglGaaVvgdyl 647 (652)
T COG4867 627 QGRVVVPDLDGLGAAVVGDYL 647 (652)
T ss_pred CCeEEecCcchhhHHHHHHHH
Confidence 9998763 334444444443
No 121
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.46 E-value=1.6e-12 Score=131.46 Aligned_cols=153 Identities=18% Similarity=0.204 Sum_probs=112.1
Q ss_pred CceEEEEEeCCCCCCc-------hhHHHHHHHHHHHHHhhc-CCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCC
Q 004256 561 GALVIFVVDASGSMAL-------NRMQNAKGAALKLLAESY-TCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPC 632 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~-------~rl~~ak~a~~~ll~~~~-~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~ 632 (765)
+.+++|+||.||||.. +|+..+|.++..++.-+. ...|.++++.|++. .....|++ ...+.+.+..+.+
T Consensus 2 ~~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~-~~~~~~~~--~~~v~~~~~~~~p 78 (199)
T cd01457 2 NRDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGD-FRRYDNVN--SSKVDQLFAENSP 78 (199)
T ss_pred CcCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-ccccCCcC--HHHHHHHHhcCCC
Confidence 4689999999999973 489999999999887443 35789999999888 55556665 7778888888988
Q ss_pred CCCChhHHHHHHHHHHHHhhhcc--CCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhC
Q 004256 633 GGGSPLAHGLSMAVRVGLNAEKS--GDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKA 710 (765)
Q Consensus 633 gG~T~l~~aL~~A~~~l~~~~~~--~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 710 (765)
+|+|+++.+|..+++........ ..+....||+||||.++.. ....+.+.+.++++.+.
T Consensus 79 ~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~-------------------~~~~~~i~~a~~~l~~~ 139 (199)
T cd01457 79 DGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDK-------------------DAVERVIIKASDELDAD 139 (199)
T ss_pred CCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcH-------------------HHHHHHHHHHHHhhccc
Confidence 99999999999998554432211 1112458999999997621 12334445666655543
Q ss_pred -CCEEEEEeCCCCCCCHHHHHHHHHH
Q 004256 711 -GMSLLVIDTENKFVSTGFAKEIARV 735 (765)
Q Consensus 711 -gi~~~vig~~~~~~~~~~l~~LA~~ 735 (765)
++.+.+|++|.+.-...+|++|++.
T Consensus 140 ~~i~i~~v~vG~~~~~~~~L~~ld~~ 165 (199)
T cd01457 140 NELAISFLQIGRDPAATAFLKALDDQ 165 (199)
T ss_pred cCceEEEEEeCCcHHHHHHHHHHhHH
Confidence 6888888888754467789999876
No 122
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.46 E-value=1.8e-13 Score=151.35 Aligned_cols=218 Identities=22% Similarity=0.277 Sum_probs=136.8
Q ss_pred CCCCCCceeechHHHHHHHHhhh----c---------CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALLLGAI----D---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~~----~---------~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
..+.|++|.|.+..++.+.-... . ....+|||+||||||||++|++++..+.
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--------------- 181 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--------------- 181 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC---------------
Confidence 45677899999998888732211 1 1135699999999999999999998764
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEecccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi 233 (765)
.+|+.+.........+|. +. .....++..+ ..++||||||
T Consensus 182 ---------------------------~~~~~v~~~~l~~~~~g~---------~~-~~i~~~f~~a~~~~p~il~iDEi 224 (364)
T TIGR01242 182 ---------------------------ATFIRVVGSELVRKYIGE---------GA-RLVREIFELAKEKAPSIIFIDEI 224 (364)
T ss_pred ---------------------------CCEEecchHHHHHHhhhH---------HH-HHHHHHHHHHHhcCCcEEEhhhh
Confidence 234333221111112221 00 0001112222 3469999999
Q ss_pred ccC-----------CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCC
Q 004256 234 NLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMT 300 (765)
Q Consensus 234 ~~L-----------~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~ 300 (765)
+.+ +..++..|.+++..-.. +. ...++++|+|+|. ...++++|+. ||+..+.+.. |+
T Consensus 225 D~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~-~~-------~~~~v~vI~ttn~-~~~ld~al~r~grfd~~i~v~~-P~ 294 (364)
T TIGR01242 225 DAIAAKRTDSGTSGDREVQRTLMQLLAELDG-FD-------PRGNVKVIAATNR-PDILDPALLRPGRFDRIIEVPL-PD 294 (364)
T ss_pred hhhccccccCCCCccHHHHHHHHHHHHHhhC-CC-------CCCCEEEEEecCC-hhhCChhhcCcccCceEEEeCC-cC
Confidence 987 34566777777643210 00 1235789999994 4567788875 8888888874 57
Q ss_pred HhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Q 004256 301 FEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKC 380 (765)
Q Consensus 301 ~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a 380 (765)
.+.|.+|+..... ......++ .++.++..+.. .+.+....+++.|..
T Consensus 295 ~~~r~~Il~~~~~-------------------------~~~l~~~~-----~~~~la~~t~g---~sg~dl~~l~~~A~~ 341 (364)
T TIGR01242 295 FEGRLEILKIHTR-------------------------KMKLAEDV-----DLEAIAKMTEG---ASGADLKAICTEAGM 341 (364)
T ss_pred HHHHHHHHHHHHh-------------------------cCCCCccC-----CHHHHHHHcCC---CCHHHHHHHHHHHHH
Confidence 8888888652210 00011111 13445444432 366788889999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHh
Q 004256 381 LAALEGREKVNVDDLKKAVELV 402 (765)
Q Consensus 381 ~A~l~gr~~Vt~edv~~A~~lv 402 (765)
.|..+++..|+.+|+.+|+.-+
T Consensus 342 ~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 342 FAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHhCCCccCHHHHHHHHHHh
Confidence 9999999999999999998765
No 123
>CHL00176 ftsH cell division protein; Validated
Probab=99.46 E-value=2.1e-13 Score=158.96 Aligned_cols=215 Identities=19% Similarity=0.250 Sum_probs=136.7
Q ss_pred CCCCCceeechHHHHHHH-H-hhh----------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCC
Q 004256 91 FFPLAAVVGQDAIKTALL-L-GAI----------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~-l-~~~----------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~ 158 (765)
...|++|+|.+.++..+. + ..+ .....+|||+||||||||++||+++..+
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~------------------ 240 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------------------ 240 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh------------------
Confidence 468999999999888772 1 111 1124579999999999999999998864
Q ss_pred CcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEecccccc
Q 004256 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINL 235 (765)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~~ 235 (765)
..||+.+.+......+.|. +.. ....++..| ...|||||||+.
T Consensus 241 ------------------------~~p~i~is~s~f~~~~~g~---------~~~-~vr~lF~~A~~~~P~ILfIDEID~ 286 (638)
T CHL00176 241 ------------------------EVPFFSISGSEFVEMFVGV---------GAA-RVRDLFKKAKENSPCIVFIDEIDA 286 (638)
T ss_pred ------------------------CCCeeeccHHHHHHHhhhh---------hHH-HHHHHHHHHhcCCCcEEEEecchh
Confidence 3455555444322222221 000 001122232 235899999998
Q ss_pred CC-----------HHH---HHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCC
Q 004256 236 LD-----------EGI---SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (765)
Q Consensus 236 L~-----------~~~---q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~ 299 (765)
+. .+. ++.||..|+.-. ...+++||++||. ...++++|+. ||+..+.+.. |
T Consensus 287 l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~-----------~~~~ViVIaaTN~-~~~LD~ALlRpGRFd~~I~v~l-P 353 (638)
T CHL00176 287 VGRQRGAGIGGGNDEREQTLNQLLTEMDGFK-----------GNKGVIVIAATNR-VDILDAALLRPGRFDRQITVSL-P 353 (638)
T ss_pred hhhcccCCCCCCcHHHHHHHHHHHhhhcccc-----------CCCCeeEEEecCc-hHhhhhhhhccccCceEEEECC-C
Confidence 83 233 344444443211 1235789999994 4456788875 8999988885 5
Q ss_pred CHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccC-CHHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 004256 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAI-GREQLKYLVMEALRGGCQGHRAELYAARVA 378 (765)
Q Consensus 300 ~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i-~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A 378 (765)
+.+.|.+|+...... ..+ ++..+..++. .....+.+.+..+++.|
T Consensus 354 d~~~R~~IL~~~l~~-------------------------------~~~~~d~~l~~lA~---~t~G~sgaDL~~lvneA 399 (638)
T CHL00176 354 DREGRLDILKVHARN-------------------------------KKLSPDVSLELIAR---RTPGFSGADLANLLNEA 399 (638)
T ss_pred CHHHHHHHHHHHHhh-------------------------------cccchhHHHHHHHh---cCCCCCHHHHHHHHHHH
Confidence 788888887632110 111 1223344433 33333678888899988
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhcC
Q 004256 379 KCLAALEGREKVNVDDLKKAVELVIL 404 (765)
Q Consensus 379 ~a~A~l~gr~~Vt~edv~~A~~lvl~ 404 (765)
...|+..+...|+.+|+.+|+.-++.
T Consensus 400 al~a~r~~~~~It~~dl~~Ai~rv~~ 425 (638)
T CHL00176 400 AILTARRKKATITMKEIDTAIDRVIA 425 (638)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHh
Confidence 88888889999999999999987654
No 124
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.45 E-value=4.1e-12 Score=124.44 Aligned_cols=153 Identities=16% Similarity=0.208 Sum_probs=116.3
Q ss_pred eEEEEEeCCCCCCchhHHHHHHHHHHHHHhhc--CCCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhhcCCC-CC-CC
Q 004256 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLPC-GG-GS 636 (765)
Q Consensus 563 ~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~--~~~d~v~lv~F~~~~a~~~~p~t~--~~~~~~~~l~~l~~-gG-~T 636 (765)
+|+||||.|+||....++.+|..+..++...- ....+||||.|++. +.+.+++.. +...+...|+.++. +| +|
T Consensus 2 DivfllD~S~Si~~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~-~~~~~~l~~~~~~~~l~~~i~~i~~~~g~~t 80 (165)
T cd01481 2 DIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDT-PRPEFYLNTHSTKADVLGAVRRLRLRGGSQL 80 (165)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCC-eeEEEeccccCCHHHHHHHHHhcccCCCCcc
Confidence 78999999999988888889998888886432 35579999999998 777777764 77889999998864 44 58
Q ss_pred hhHHHHHHHHHHHHhhhccC---CCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCE
Q 004256 637 PLAHGLSMAVRVGLNAEKSG---DVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMS 713 (765)
Q Consensus 637 ~l~~aL~~A~~~l~~~~~~~---~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~ 713 (765)
+++.||..+.+.+-...... .....++||+|||+++ +++...++.++..||.
T Consensus 81 ~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~-------------------------d~~~~~a~~lr~~gv~ 135 (165)
T cd01481 81 NTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQ-------------------------DDVERPAVALKRAGIV 135 (165)
T ss_pred cHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCc-------------------------chHHHHHHHHHHCCcE
Confidence 99999999887654322111 1123478999999965 2356778889999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCeEEEcC
Q 004256 714 LLVIDTENKFVSTGFAKEIARVAQGKYYYLP 744 (765)
Q Consensus 714 ~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~ 744 (765)
+++||.+. ++...|+.||..-. ..|.++
T Consensus 136 i~~vG~~~--~~~~eL~~ias~p~-~vf~v~ 163 (165)
T cd01481 136 PFAIGARN--ADLAELQQIAFDPS-FVFQVS 163 (165)
T ss_pred EEEEeCCc--CCHHHHHHHhCCCc-cEEEec
Confidence 99999984 47888999987663 344443
No 125
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.45 E-value=2.5e-13 Score=150.45 Aligned_cols=220 Identities=16% Similarity=0.224 Sum_probs=138.4
Q ss_pred CCCCCCCceeechHHHHHHHHhh----hc---------CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCC
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGA----ID---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~----~~---------~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~ 155 (765)
.+...|++|.|.+..++.|.-.. .. +...+|||+||||||||++|++++..+.
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~-------------- 204 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT-------------- 204 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--------------
Confidence 34567899999999888772111 11 1246799999999999999999998753
Q ss_pred CCCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCcee---eccCCeEeccc
Q 004256 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYIDE 232 (765)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~---~A~~GiL~lDE 232 (765)
.+|+.+.........+|. +... ..-++. .....||||||
T Consensus 205 ----------------------------~~fi~i~~s~l~~k~~ge---------~~~~-lr~lf~~A~~~~P~ILfIDE 246 (398)
T PTZ00454 205 ----------------------------ATFIRVVGSEFVQKYLGE---------GPRM-VRDVFRLARENAPSIIFIDE 246 (398)
T ss_pred ----------------------------CCEEEEehHHHHHHhcch---------hHHH-HHHHHHHHHhcCCeEEEEEC
Confidence 234433222111222221 0000 000111 12346999999
Q ss_pred cccCC-----------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCC
Q 004256 233 INLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (765)
Q Consensus 233 i~~L~-----------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~ 299 (765)
|+.+. ..++..|..++..-.. +. ...++.+|++|| ....++++|+. ||+..+.+.. |
T Consensus 247 ID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~-~~-------~~~~v~VI~aTN-~~d~LDpAllR~GRfd~~I~~~~-P 316 (398)
T PTZ00454 247 VDSIATKRFDAQTGADREVQRILLELLNQMDG-FD-------QTTNVKVIMATN-RADTLDPALLRPGRLDRKIEFPL-P 316 (398)
T ss_pred HhhhccccccccCCccHHHHHHHHHHHHHhhc-cC-------CCCCEEEEEecC-CchhCCHHHcCCCcccEEEEeCC-c
Confidence 99762 3455556665543110 10 113578899999 56688899987 9999988874 5
Q ss_pred CHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHH-HHHHHHHHHHhCCCCCCChHHHHHHHH
Q 004256 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYAARVA 378 (765)
Q Consensus 300 ~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~-~l~~l~~~a~~~g~~s~Ra~i~llr~A 378 (765)
+.+.|.+|...... +..+..+ -+..++.. ....+.+....+++.|
T Consensus 317 ~~~~R~~Il~~~~~-------------------------------~~~l~~dvd~~~la~~---t~g~sgaDI~~l~~eA 362 (398)
T PTZ00454 317 DRRQKRLIFQTITS-------------------------------KMNLSEEVDLEDFVSR---PEKISAADIAAICQEA 362 (398)
T ss_pred CHHHHHHHHHHHHh-------------------------------cCCCCcccCHHHHHHH---cCCCCHHHHHHHHHHH
Confidence 77788888763211 0111111 12334333 2223678888899999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhcC
Q 004256 379 KCLAALEGREKVNVDDLKKAVELVIL 404 (765)
Q Consensus 379 ~a~A~l~gr~~Vt~edv~~A~~lvl~ 404 (765)
...|.-+++..|+.+|+.+|+..+..
T Consensus 363 ~~~A~r~~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 363 GMQAVRKNRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred HHHHHHcCCCccCHHHHHHHHHHHHh
Confidence 99999999999999999999998754
No 126
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.4e-12 Score=149.11 Aligned_cols=233 Identities=18% Similarity=0.194 Sum_probs=141.1
Q ss_pred cCCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccc
Q 004256 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (765)
+++|..|++||||+.+++.|.-........| +||+||+|||||++|+.+++.+ ||.......+|..|.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l-----------~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL-----------NCEKGVSANPCNDCE 77 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh-----------cCCCCCCcccCCCCH
Confidence 3567789999999999999965544444555 6999999999999999999976 454332333444443
Q ss_pred ccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHH
Q 004256 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (765)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~ 246 (765)
.-...... .-..++.+.... -.|--++ +.+... ....| ......|++|||++.|+.+.++.||.
T Consensus 78 ~C~~i~~g-------~~~d~~eidaas----~~~v~~i-R~l~~~-~~~~p---~~~~~kV~iIDE~~~ls~~a~naLLk 141 (509)
T PRK14958 78 NCREIDEG-------RFPDLFEVDAAS----RTKVEDT-RELLDN-IPYAP---TKGRFKVYLIDEVHMLSGHSFNALLK 141 (509)
T ss_pred HHHHHhcC-------CCceEEEEcccc----cCCHHHH-HHHHHH-Hhhcc---ccCCcEEEEEEChHhcCHHHHHHHHH
Confidence 21100000 111244443221 0110000 000000 00111 12234699999999999999999999
Q ss_pred HHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcccc
Q 004256 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (765)
Q Consensus 247 ~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~ 326 (765)
.|++- |..+++|.+++ +...+.+.+.+|+-.+ ++. |...+ +|.....+
T Consensus 142 ~LEep-------------p~~~~fIlatt-d~~kl~~tI~SRc~~~-~f~-~l~~~---~i~~~l~~------------- 189 (509)
T PRK14958 142 TLEEP-------------PSHVKFILATT-DHHKLPVTVLSRCLQF-HLA-QLPPL---QIAAHCQH------------- 189 (509)
T ss_pred HHhcc-------------CCCeEEEEEEC-ChHhchHHHHHHhhhh-hcC-CCCHH---HHHHHHHH-------------
Confidence 99873 33455666665 4556677799998554 554 33333 23222111
Q ss_pred ccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 327 ~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
++.. .++.+++++++.|+..+ +. +.|..++++.-+.+ . |...|+.+||...+.
T Consensus 190 ---------il~~----egi~~~~~al~~ia~~s---~G-slR~al~lLdq~ia--~--~~~~It~~~V~~~lg 242 (509)
T PRK14958 190 ---------LLKE----ENVEFENAALDLLARAA---NG-SVRDALSLLDQSIA--Y--GNGKVLIADVKTMLG 242 (509)
T ss_pred ---------HHHH----cCCCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHh--c--CCCCcCHHHHHHHHC
Confidence 1121 25788999998887665 23 68999998876532 2 556899999987754
No 127
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.1e-12 Score=151.11 Aligned_cols=218 Identities=22% Similarity=0.251 Sum_probs=150.5
Q ss_pred CCCCCceeechHHHHHH-HHhhh-----------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCC
Q 004256 91 FFPLAAVVGQDAIKTAL-LLGAI-----------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL-~l~~~-----------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~ 158 (765)
...|.++.|.+++|..| .+..+ +.-..+|||+||||||||.||++++..
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE------------------- 367 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE------------------- 367 (774)
T ss_pred CCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc-------------------
Confidence 47899999999999988 22221 223578999999999999999999975
Q ss_pred CcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeecc---CCeEecccccc
Q 004256 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEINL 235 (765)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~---~GiL~lDEi~~ 235 (765)
.+.||+.+..+-..+.++|. | ......++..|. ..|+|||||+.
T Consensus 368 -----------------------AgVPF~svSGSEFvE~~~g~---------~-asrvr~lf~~ar~~aP~iifideida 414 (774)
T KOG0731|consen 368 -----------------------AGVPFFSVSGSEFVEMFVGV---------G-ASRVRDLFPLARKNAPSIIFIDEIDA 414 (774)
T ss_pred -----------------------cCCceeeechHHHHHHhccc---------c-hHHHHHHHHHhhccCCeEEEeccccc
Confidence 36789887776666666663 2 122233444442 35999999987
Q ss_pred CCH---------------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCC
Q 004256 236 LDE---------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (765)
Q Consensus 236 L~~---------------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p 298 (765)
... ...+.||--|+.-. ....++++|+|| ..+.++++|+. ||+-.+.+..
T Consensus 415 ~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~-----------~~~~vi~~a~tn-r~d~ld~allrpGRfdr~i~i~~- 481 (774)
T KOG0731|consen 415 VGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE-----------TSKGVIVLAATN-RPDILDPALLRPGRFDRQIQIDL- 481 (774)
T ss_pred ccccccccccCCCChHHHHHHHHHHHHhcCCc-----------CCCcEEEEeccC-CccccCHHhcCCCccccceeccC-
Confidence 632 34566666665322 113589999999 67778888886 9999998985
Q ss_pred CCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 004256 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (765)
Q Consensus 299 ~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A 378 (765)
|+...|.+|...... ++.++++..++.. ++......+.-.+.+++..|
T Consensus 482 p~~~~r~~i~~~h~~-------------------------------~~~~~~e~~dl~~-~a~~t~gf~gadl~n~~nea 529 (774)
T KOG0731|consen 482 PDVKGRASILKVHLR-------------------------------KKKLDDEDVDLSK-LASLTPGFSGADLANLCNEA 529 (774)
T ss_pred CchhhhHHHHHHHhh-------------------------------ccCCCcchhhHHH-HHhcCCCCcHHHHHhhhhHH
Confidence 577888888763211 2333222222222 34333333445567788888
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhcCC
Q 004256 379 KCLAALEGREKVNVDDLKKAVELVILP 405 (765)
Q Consensus 379 ~a~A~l~gr~~Vt~edv~~A~~lvl~h 405 (765)
..+|+-++..+|+..|+..|++.++..
T Consensus 530 a~~a~r~~~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 530 ALLAARKGLREIGTKDLEYAIERVIAG 556 (774)
T ss_pred HHHHHHhccCccchhhHHHHHHHHhcc
Confidence 999999999999999999999966653
No 128
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=3e-12 Score=144.88 Aligned_cols=233 Identities=21% Similarity=0.259 Sum_probs=139.1
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
.+|..|++|+||+.++..|.-........+ +||+|||||||||+|+++++.+. |.......+|..|..
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~-----------~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN-----------CENRKGVEPCNECRA 76 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-----------cccCCCCCCCcccHH
Confidence 467789999999999888855544444444 89999999999999999999764 322211222332222
Q ss_pred cccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~ 247 (765)
-..... + ....++.+..... .|--++ +.+.. .....| ..+...++||||++.|....++.|+..
T Consensus 77 c~~i~~-g------~~~dv~el~aa~~----~gid~i-R~i~~-~~~~~p---~~~~~kVvIIDE~h~Lt~~a~~~LLk~ 140 (472)
T PRK14962 77 CRSIDE-G------TFMDVIELDAASN----RGIDEI-RKIRD-AVGYRP---MEGKYKVYIIDEVHMLTKEAFNALLKT 140 (472)
T ss_pred HHHHhc-C------CCCccEEEeCccc----CCHHHH-HHHHH-HHhhCh---hcCCeEEEEEEChHHhHHHHHHHHHHH
Confidence 110000 0 1123333322110 000000 00000 001112 123557999999999999999999999
Q ss_pred HHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccc
Q 004256 248 LTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (765)
Q Consensus 248 l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~ 327 (765)
|++.. ..+++|.++| ....+.+.|.+|+.++ .+. |+..+....++..
T Consensus 141 LE~p~-------------~~vv~Ilatt-n~~kl~~~L~SR~~vv-~f~-~l~~~el~~~L~~----------------- 187 (472)
T PRK14962 141 LEEPP-------------SHVVFVLATT-NLEKVPPTIISRCQVI-EFR-NISDELIIKRLQE----------------- 187 (472)
T ss_pred HHhCC-------------CcEEEEEEeC-ChHhhhHHHhcCcEEE-EEC-CccHHHHHHHHHH-----------------
Confidence 98732 2355555554 3347889999999754 665 4455443333221
Q ss_pred cCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 004256 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (765)
Q Consensus 328 ~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~l 401 (765)
++.. .++.++++++++|+..+ +. +.|..++.+..+... .+ ..|+.+||.+++..
T Consensus 188 --------i~~~----egi~i~~eal~~Ia~~s---~G-dlR~aln~Le~l~~~---~~-~~It~e~V~~~l~~ 241 (472)
T PRK14962 188 --------VAEA----EGIEIDREALSFIAKRA---SG-GLRDALTMLEQVWKF---SE-GKITLETVHEALGL 241 (472)
T ss_pred --------HHHH----cCCCCCHHHHHHHHHHh---CC-CHHHHHHHHHHHHHh---cC-CCCCHHHHHHHHcC
Confidence 1111 25789999999997754 22 578888888765433 23 35999999988753
No 129
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.43 E-value=2.2e-12 Score=156.24 Aligned_cols=219 Identities=21% Similarity=0.280 Sum_probs=132.2
Q ss_pred CCceeechHHHHHHH--Hh--hh---cCC--CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccc
Q 004256 94 LAAVVGQDAIKTALL--LG--AI---DRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (765)
Q Consensus 94 f~~ivG~~~~~~aL~--l~--~~---~~~--~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 164 (765)
+..|+||+.++..+. +. .+ +|. .+.+||.||+|||||++|++||..+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~---------------------- 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD---------------------- 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc----------------------
Confidence 456999999888772 22 11 122 246899999999999999999998742
Q ss_pred ccccccccccCcccccccCCCeEeCCCC-----CcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHH
Q 004256 165 LDEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG 239 (765)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~-----~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~ 239 (765)
...+|+.+++. ....+|+|.-....+...|. ...+.+.....+|||||||+.+++.
T Consensus 625 -----------------~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g--~l~~~v~~~p~~vLllDEieka~~~ 685 (857)
T PRK10865 625 -----------------SDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGG--YLTEAVRRRPYSVILLDEVEKAHPD 685 (857)
T ss_pred -----------------CCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhH--HHHHHHHhCCCCeEEEeehhhCCHH
Confidence 12334443332 12234454210000000000 0001111224589999999999999
Q ss_pred HHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCC------------------------CCCcchHHHhhhhcceee
Q 004256 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------------------------EGVVREHLLDRIAINLSA 295 (765)
Q Consensus 240 ~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~------------------------eg~l~~~L~dRf~~~v~i 295 (765)
+++.|+++|++|.++- ..|..... .+.++|.|||.. .+.|+|+|++|++.++ +
T Consensus 686 v~~~Ll~ile~g~l~d-~~gr~vd~-rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~ii-v 762 (857)
T PRK10865 686 VFNILLQVLDDGRLTD-GQGRTVDF-RNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVV-V 762 (857)
T ss_pred HHHHHHHHHhhCceec-CCceEEee-cccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeE-e
Confidence 9999999999998431 11222222 134589999962 2458899999998775 4
Q ss_pred cCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHH
Q 004256 296 DLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAA 375 (765)
Q Consensus 296 ~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~ll 375 (765)
..|.+.+....|+. .++..... + +..+.. .+.++++++++|++.+..... |.|.+..++
T Consensus 763 F~PL~~edl~~Iv~---~~L~~l~~--------------r-l~~~gi--~l~is~~al~~L~~~gy~~~~-GARpL~r~I 821 (857)
T PRK10865 763 FHPLGEQHIASIAQ---IQLQRLYK--------------R-LEERGY--EIHISDEALKLLSENGYDPVY-GARPLKRAI 821 (857)
T ss_pred cCCCCHHHHHHHHH---HHHHHHHH--------------H-HHhCCC--cCcCCHHHHHHHHHcCCCccC-ChHHHHHHH
Confidence 44777776555544 44332211 1 112222 368999999999987665433 668777766
Q ss_pred HH
Q 004256 376 RV 377 (765)
Q Consensus 376 r~ 377 (765)
+.
T Consensus 822 ~~ 823 (857)
T PRK10865 822 QQ 823 (857)
T ss_pred HH
Confidence 54
No 130
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=2.7e-12 Score=146.62 Aligned_cols=230 Identities=19% Similarity=0.225 Sum_probs=136.4
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCC-CcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREI-GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~-~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
+++..|++||||+.+++.|.-+...... +.+||+||+|||||++||++++.+ ||........|..|..
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L-----------nC~~~~~~~pCg~C~s 77 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL-----------NCETGVTSTPCEVCAT 77 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-----------CCCcCCCCCCCccCHH
Confidence 5677899999999999988544433333 447999999999999999999876 3433222233444432
Q ss_pred cccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~ 247 (765)
-..... + .-..++.++... ..-+. ++ +.+.... ...| ......|+||||++.|+...++.|+..
T Consensus 78 C~~I~~-g------~hpDviEIDAAs--~~~Vd--dI-Reli~~~-~y~P---~~gk~KV~IIDEVh~LS~~A~NALLKt 141 (702)
T PRK14960 78 CKAVNE-G------RFIDLIEIDAAS--RTKVE--DT-RELLDNV-PYAP---TQGRFKVYLIDEVHMLSTHSFNALLKT 141 (702)
T ss_pred HHHHhc-C------CCCceEEecccc--cCCHH--HH-HHHHHHH-hhhh---hcCCcEEEEEechHhcCHHHHHHHHHH
Confidence 100000 0 112334333221 00000 00 1110000 0111 012345999999999999999999999
Q ss_pred HHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccc
Q 004256 248 LTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (765)
Q Consensus 248 l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~ 327 (765)
|++.. ..+.+|.+++ +...+...+++|+..+ .+. |...+...+.+.
T Consensus 142 LEEPP-------------~~v~FILaTt-d~~kIp~TIlSRCq~f-eFk-pLs~eEI~k~L~------------------ 187 (702)
T PRK14960 142 LEEPP-------------EHVKFLFATT-DPQKLPITVISRCLQF-TLR-PLAVDEITKHLG------------------ 187 (702)
T ss_pred HhcCC-------------CCcEEEEEEC-ChHhhhHHHHHhhhee-ecc-CCCHHHHHHHHH------------------
Confidence 98732 2345666665 4556778889999654 665 444443222222
Q ss_pred cCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 004256 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (765)
Q Consensus 328 ~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A 398 (765)
.++.. .++.++++++..|+..+ ++ +.|..++++..+. +. |...|+.++|...
T Consensus 188 -------~Il~k----EgI~id~eAL~~IA~~S---~G-dLRdALnLLDQaI--ay--g~g~IT~edV~~l 239 (702)
T PRK14960 188 -------AILEK----EQIAADQDAIWQIAESA---QG-SLRDALSLTDQAI--AY--GQGAVHHQDVKEM 239 (702)
T ss_pred -------HHHHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH--Hh--cCCCcCHHHHHHH
Confidence 11111 25789999988887654 33 6899999876544 32 4567888888664
No 131
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.41 E-value=9.9e-13 Score=157.65 Aligned_cols=226 Identities=20% Similarity=0.202 Sum_probs=150.3
Q ss_pred CCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccc
Q 004256 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (765)
-.++.++|++..+..+.-........++||+||||||||++|++|+..+.... +
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~-~------------------------- 232 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGK-V------------------------- 232 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCC-C-------------------------
Confidence 34678999999888775333344567899999999999999999998753200 0
Q ss_pred cccCcccccccCCCeEeCCCCCcc--cceeeecccccccccCCCcccCCceee---ccCCeEeccccccCC---------
Q 004256 172 DTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDEINLLD--------- 237 (765)
Q Consensus 172 ~~~~~~~~~~~~~~~v~l~~~~~e--~~L~G~~d~e~~~~~g~~~~~~Gll~~---A~~GiL~lDEi~~L~--------- 237 (765)
+.......++.++++... ....|.. ++. ...++.. ..+.|||||||+.|-
T Consensus 233 ------p~~l~~~~~~~~~~~~l~a~~~~~g~~--e~~--------l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~ 296 (731)
T TIGR02639 233 ------PENLKNAKIYSLDMGSLLAGTKYRGDF--EER--------LKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS 296 (731)
T ss_pred ------chhhcCCeEEEecHHHHhhhccccchH--HHH--------HHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc
Confidence 000023345554433211 1122211 000 0112222 235699999999883
Q ss_pred HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC----CcchHHHhhhhcceeecCCCCHhhHHHHHHHHHH
Q 004256 238 EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (765)
Q Consensus 238 ~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg----~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~ 313 (765)
.++++.|+..|+.|. +++|++||+++. +.+++|.+||.. +.+. +|+.++...|+.....
T Consensus 297 ~~~~~~L~~~l~~g~---------------i~~IgaTt~~e~~~~~~~d~al~rRf~~-i~v~-~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 297 MDASNLLKPALSSGK---------------LRCIGSTTYEEYKNHFEKDRALSRRFQK-IDVG-EPSIEETVKILKGLKE 359 (731)
T ss_pred HHHHHHHHHHHhCCC---------------eEEEEecCHHHHHHHhhhhHHHHHhCce-EEeC-CCCHHHHHHHHHHHHH
Confidence 356788888888775 678999997542 467899999985 5788 5688888888764322
Q ss_pred HHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCC--CCChHHHHHHHHHHHHHHcC----C
Q 004256 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQ--GHRAELYAARVAKCLAALEG----R 387 (765)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~--s~Ra~i~llr~A~a~A~l~g----r 387 (765)
. +.-..+|.+++++++.++.++.++-.. -++..+.++..|.+...+.. .
T Consensus 360 ~-------------------------~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~ 414 (731)
T TIGR02639 360 K-------------------------YEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKK 414 (731)
T ss_pred H-------------------------HHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccc
Confidence 1 112236899999999999998776321 25667899998888777653 2
Q ss_pred CCCCHHHHHHHHHH
Q 004256 388 EKVNVDDLKKAVEL 401 (765)
Q Consensus 388 ~~Vt~edv~~A~~l 401 (765)
..|+.+||..++..
T Consensus 415 ~~v~~~~i~~~i~~ 428 (731)
T TIGR02639 415 ANVSVKDIENVVAK 428 (731)
T ss_pred cccCHHHHHHHHHH
Confidence 45999999999875
No 132
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.41 E-value=1.4e-12 Score=153.94 Aligned_cols=219 Identities=20% Similarity=0.214 Sum_probs=133.6
Q ss_pred CCCCCCCceeechHHHH---HHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccc
Q 004256 89 RQFFPLAAVVGQDAIKT---ALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~---aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (765)
.++..|++++||+.++. .|.-........+++|+||||||||++|++|++.+.
T Consensus 22 ~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~------------------------ 77 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR------------------------ 77 (725)
T ss_pred cCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc------------------------
Confidence 34667889999999774 332222233456899999999999999999998653
Q ss_pred cccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHH
Q 004256 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (765)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll 245 (765)
.+|+.+++... |--++...+.... ... . ...++++||||||+.|+...|+.|+
T Consensus 78 ------------------~~f~~lna~~~-----~i~dir~~i~~a~-~~l-~--~~~~~~IL~IDEIh~Ln~~qQdaLL 130 (725)
T PRK13341 78 ------------------AHFSSLNAVLA-----GVKDLRAEVDRAK-ERL-E--RHGKRTILFIDEVHRFNKAQQDALL 130 (725)
T ss_pred ------------------Ccceeehhhhh-----hhHHHHHHHHHHH-HHh-h--hcCCceEEEEeChhhCCHHHHHHHH
Confidence 22333332210 0000000000000 000 0 0113569999999999999999999
Q ss_pred HHHHcCceEEEeCCeeEEeeCceEEEEeecCCC-CCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcc
Q 004256 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (765)
Q Consensus 246 ~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e-g~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~ 324 (765)
..++++. +++|++++... ..+.++|++|..++ .+. |++.+ |+..+...+..+...
T Consensus 131 ~~lE~g~---------------IiLI~aTTenp~~~l~~aL~SR~~v~-~l~-pLs~e---di~~IL~~~l~~~~~---- 186 (725)
T PRK13341 131 PWVENGT---------------ITLIGATTENPYFEVNKALVSRSRLF-RLK-SLSDE---DLHQLLKRALQDKER---- 186 (725)
T ss_pred HHhcCce---------------EEEEEecCCChHhhhhhHhhccccce-ecC-CCCHH---HHHHHHHHHHHHHHh----
Confidence 9988764 56777766433 45778999997543 554 44444 444443333221110
Q ss_pred ccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHH
Q 004256 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGR--EKVNVDDLKKAVEL 401 (765)
Q Consensus 325 ~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr--~~Vt~edv~~A~~l 401 (765)
.+. ..++.++++++++|++.+ .. +.|.++++++.+...+...+. ..|+.+++++++.-
T Consensus 187 --------------~~g-~~~v~I~deaL~~La~~s-~G---D~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 187 --------------GYG-DRKVDLEPEAEKHLVDVA-NG---DARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred --------------hcC-CcccCCCHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHH
Confidence 000 125889999999998876 22 579999999987644332222 23788888887764
No 133
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=2.1e-12 Score=151.60 Aligned_cols=215 Identities=18% Similarity=0.200 Sum_probs=122.9
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCcE-EEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGI-AISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~V-Li~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
+++..|++||||+.+++.|.-+.......|. ||+||+|||||++||.|++.+. |.......+|..|..
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln-----------ce~~~~~~pCg~C~s 78 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN-----------CEQGVTATPCGVCSS 78 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc-----------CccCCCCCCCCCchH
Confidence 5677899999999999988544444455664 8999999999999999999864 321111123333322
Q ss_pred cccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~ 247 (765)
-..... + ...-++.+.... -.| +|.-+.+.. .....| ......|+||||++.|+...++.||..
T Consensus 79 C~~i~~-g------~~~DviEidAas----~~k-VDdIReLie-~v~~~P---~~gk~KViIIDEAh~LT~eAqNALLKt 142 (944)
T PRK14949 79 CVEIAQ-G------RFVDLIEVDAAS----RTK-VDDTRELLD-NVQYRP---SRGRFKVYLIDEVHMLSRSSFNALLKT 142 (944)
T ss_pred HHHHhc-C------CCceEEEecccc----ccC-HHHHHHHHH-HHHhhh---hcCCcEEEEEechHhcCHHHHHHHHHH
Confidence 110000 0 001122222110 001 100011100 001111 122446999999999999999999999
Q ss_pred HHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccc
Q 004256 248 LTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (765)
Q Consensus 248 l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~ 327 (765)
|++- |..+++|.+++ +...+.+.|+.|+-.+ .+. |...++....+. +.
T Consensus 143 LEEP-------------P~~vrFILaTT-e~~kLl~TIlSRCq~f-~fk-pLs~eEI~~~L~---~i------------- 190 (944)
T PRK14949 143 LEEP-------------PEHVKFLLATT-DPQKLPVTVLSRCLQF-NLK-SLTQDEIGTQLN---HI------------- 190 (944)
T ss_pred Hhcc-------------CCCeEEEEECC-CchhchHHHHHhheEE-eCC-CCCHHHHHHHHH---HH-------------
Confidence 9973 23455666655 4556888999998543 554 333443222221 11
Q ss_pred cCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Q 004256 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (765)
Q Consensus 328 ~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~ 379 (765)
+.. .++.+++++++.|+.++ ++ +.|..+.++..+.
T Consensus 191 ---------l~~----EgI~~edeAL~lIA~~S---~G-d~R~ALnLLdQal 225 (944)
T PRK14949 191 ---------LTQ----EQLPFEAEALTLLAKAA---NG-SMRDALSLTDQAI 225 (944)
T ss_pred ---------HHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH
Confidence 111 24778888888877553 22 4788888776544
No 134
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=3.3e-12 Score=145.61 Aligned_cols=227 Identities=20% Similarity=0.217 Sum_probs=131.0
Q ss_pred cCCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC--------CC
Q 004256 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT--------CP 158 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~--------~~ 158 (765)
|+++..|++||||+.+++.|.-........| +||+|++|||||++|+.|++.+ ||... .|
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL-----------nC~~p~~~~g~~~~P 77 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL-----------NCTGADGEGGITAQP 77 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh-----------cCCCccccccCCCCC
Confidence 3567789999999999998854444444455 6999999999999999999976 45311 11
Q ss_pred CcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCH
Q 004256 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE 238 (765)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~ 238 (765)
-..|..|..... + .-..|+.++.... .| +|--+.+... ....+ ......|+||||++.|+.
T Consensus 78 CG~C~sC~~I~a----G------~hpDviEIdAas~----~g-VDdIReLie~-~~~~P---~~gr~KViIIDEah~Ls~ 138 (700)
T PRK12323 78 CGQCRACTEIDA----G------RFVDYIEMDAASN----RG-VDEMAQLLDK-AVYAP---TAGRFKVYMIDEVHMLTN 138 (700)
T ss_pred CcccHHHHHHHc----C------CCCcceEeccccc----CC-HHHHHHHHHH-HHhch---hcCCceEEEEEChHhcCH
Confidence 112334433211 0 1112333332210 11 1100111000 00111 112345999999999999
Q ss_pred HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhh
Q 004256 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (765)
Q Consensus 239 ~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~ 318 (765)
..++.||..|++- |.+++||.+|| +...+.+.+++|+-.+ .+. +...+. |.......
T Consensus 139 ~AaNALLKTLEEP-------------P~~v~FILaTt-ep~kLlpTIrSRCq~f-~f~-~ls~ee---i~~~L~~I---- 195 (700)
T PRK12323 139 HAFNAMLKTLEEP-------------PEHVKFILATT-DPQKIPVTVLSRCLQF-NLK-QMPPGH---IVSHLDAI---- 195 (700)
T ss_pred HHHHHHHHhhccC-------------CCCceEEEEeC-ChHhhhhHHHHHHHhc-ccC-CCChHH---HHHHHHHH----
Confidence 9999999999873 23456677777 6678889999998654 565 333332 33221111
Q ss_pred HHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 004256 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (765)
Q Consensus 319 ~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~ 397 (765)
+.. .++.+++++++.|+.++ +. +.|..+.++..+.. .+...|+.++|..
T Consensus 196 ------------------l~~----Egi~~d~eAL~~IA~~A---~G-s~RdALsLLdQaia----~~~~~It~~~V~~ 244 (700)
T PRK12323 196 ------------------LGE----EGIAHEVNALRLLAQAA---QG-SMRDALSLTDQAIA----YSAGNVSEEAVRG 244 (700)
T ss_pred ------------------HHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHH----hccCCcCHHHHHH
Confidence 111 14677777777776553 22 57888877765432 1223566655544
No 135
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=8.1e-12 Score=137.99 Aligned_cols=229 Identities=19% Similarity=0.196 Sum_probs=136.7
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccc---c
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED---G 164 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---~ 164 (765)
++|..|++|+||+.+++.|.-+.......| +||+||+|||||++|+.+++.+. |.......+|. .
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-----------c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-----------CQNGITSNPCRKCII 78 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCCCCHH
Confidence 567789999999999998854444333344 69999999999999999998764 32111111232 3
Q ss_pred ccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHH
Q 004256 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (765)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~L 244 (765)
|...... .-..++.+.... . .+.-++ +.+.... ...| ......+++|||++.|+...++.|
T Consensus 79 c~~~~~~----------~~~d~~~~~~~~-~---~~v~~i-r~i~~~~-~~~p---~~~~~kviIIDEa~~l~~~a~naL 139 (363)
T PRK14961 79 CKEIEKG----------LCLDLIEIDAAS-R---TKVEEM-REILDNI-YYSP---SKSRFKVYLIDEVHMLSRHSFNAL 139 (363)
T ss_pred HHHHhcC----------CCCceEEecccc-c---CCHHHH-HHHHHHH-hcCc---ccCCceEEEEEChhhcCHHHHHHH
Confidence 3221100 011222222110 0 000000 0000000 0111 012345999999999999999999
Q ss_pred HHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcc
Q 004256 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (765)
Q Consensus 245 l~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~ 324 (765)
|..+++.. ..+++|.+++ +...+.+.+..|+-. +++. |++.++..+++...
T Consensus 140 Lk~lEe~~-------------~~~~fIl~t~-~~~~l~~tI~SRc~~-~~~~-~l~~~el~~~L~~~------------- 190 (363)
T PRK14961 140 LKTLEEPP-------------QHIKFILATT-DVEKIPKTILSRCLQ-FKLK-IISEEKIFNFLKYI------------- 190 (363)
T ss_pred HHHHhcCC-------------CCeEEEEEcC-ChHhhhHHHHhhceE-EeCC-CCCHHHHHHHHHHH-------------
Confidence 99998732 2344555554 344677889999854 3565 45566544443311
Q ss_pred ccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 325 ~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
+.. .++.+++++++.++..+ +. +.|..+.++..+... |...|+.++|.+++.
T Consensus 191 ------------~~~----~g~~i~~~al~~ia~~s---~G-~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 191 ------------LIK----ESIDTDEYALKLIAYHA---HG-SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred ------------HHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 111 14778999988887654 22 578888888776532 567899999988774
No 136
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1e-12 Score=138.42 Aligned_cols=158 Identities=21% Similarity=0.261 Sum_probs=110.0
Q ss_pred CCCCceeechHHHHHHHHhhhcCCC------------CcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCC
Q 004256 92 FPLAAVVGQDAIKTALLLGAIDREI------------GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~~~~~~------------~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~ 159 (765)
..+++|.|...+|+-|.-+.+-|-. .+||++||||||||+||++++...
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc------------------- 269 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC------------------- 269 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh-------------------
Confidence 5688999999999988655554422 359999999999999999999753
Q ss_pred cccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEeccccccC
Q 004256 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINLL 236 (765)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~~L 236 (765)
...|..+..+...+.+-|. ......-||+.| -..|+|||||+.|
T Consensus 270 -----------------------~tTFFNVSsstltSKwRGe----------SEKlvRlLFemARfyAPStIFiDEIDsl 316 (491)
T KOG0738|consen 270 -----------------------GTTFFNVSSSTLTSKWRGE----------SEKLVRLLFEMARFYAPSTIFIDEIDSL 316 (491)
T ss_pred -----------------------cCeEEEechhhhhhhhccc----------hHHHHHHHHHHHHHhCCceeehhhHHHH
Confidence 3467666666555555552 111122234444 2469999999887
Q ss_pred ------------CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhH
Q 004256 237 ------------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDR 304 (765)
Q Consensus 237 ------------~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r 304 (765)
+..+-+.||--|+.-....+ ....+.|+|+|| -+-+++++|+.||.-.+.|.+| +.+.|
T Consensus 317 cs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e-------~~k~VmVLAATN-~PWdiDEAlrRRlEKRIyIPLP-~~~~R 387 (491)
T KOG0738|consen 317 CSQRGGSSEHEASRRVKSELLVQMDGVQGTLE-------NSKVVMVLAATN-FPWDIDEALRRRLEKRIYIPLP-DAEAR 387 (491)
T ss_pred HhcCCCccchhHHHHHHHHHHHHhhccccccc-------cceeEEEEeccC-CCcchHHHHHHHHhhheeeeCC-CHHHH
Confidence 33566778877764221121 112367889999 7788999999999999888875 67777
Q ss_pred HHHHHH
Q 004256 305 VAAVGI 310 (765)
Q Consensus 305 ~dI~~l 310 (765)
..++.+
T Consensus 388 ~~Li~~ 393 (491)
T KOG0738|consen 388 SALIKI 393 (491)
T ss_pred HHHHHH
Confidence 766654
No 137
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=6.9e-12 Score=141.35 Aligned_cols=231 Identities=17% Similarity=0.184 Sum_probs=141.9
Q ss_pred cCCCCCCCceeechHHHHHHHHhhhcCC-CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcc---cc
Q 004256 88 GRQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW---ED 163 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l~~~~~~-~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~ 163 (765)
+++|..|++||||+.+++.|.-+..... .+.+||+||+||||||+|+.+++.+ ||.......+ |+
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L-----------nC~~~~~~~pCg~C~ 74 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCL-----------NCSNGPTSDPCGTCH 74 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHH-----------cCcCCCCCCCccccH
Confidence 4677889999999999998853333223 3469999999999999999999865 3432222223 34
Q ss_pred cccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
.|..-... ....++.++... -.|--|+ +.+... ....| + .+...+++|||++.|+.+.++.
T Consensus 75 ~C~~i~~~----------~~~Dv~eidaas----~~~vddI-R~Iie~-~~~~P--~-~~~~KVvIIDEah~Ls~~A~Na 135 (491)
T PRK14964 75 NCISIKNS----------NHPDVIEIDAAS----NTSVDDI-KVILEN-SCYLP--I-SSKFKVYIIDEVHMLSNSAFNA 135 (491)
T ss_pred HHHHHhcc----------CCCCEEEEeccc----CCCHHHH-HHHHHH-HHhcc--c-cCCceEEEEeChHhCCHHHHHH
Confidence 44432110 123344444321 0111111 111100 01112 1 2356799999999999999999
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhc
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~ 323 (765)
|+..|++-. ..+.+|.+++ +...+...+..|+..+ ++. +...+. +......
T Consensus 136 LLK~LEePp-------------~~v~fIlatt-e~~Kl~~tI~SRc~~~-~f~-~l~~~e---l~~~L~~---------- 186 (491)
T PRK14964 136 LLKTLEEPA-------------PHVKFILATT-EVKKIPVTIISRCQRF-DLQ-KIPTDK---LVEHLVD---------- 186 (491)
T ss_pred HHHHHhCCC-------------CCeEEEEEeC-ChHHHHHHHHHhheee-ecc-cccHHH---HHHHHHH----------
Confidence 999999732 3455666665 4456778899998654 565 333332 2221111
Q ss_pred cccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 004256 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (765)
Q Consensus 324 ~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~l 401 (765)
++.. .++.+++++++.|++.+ +. +.|..+.++..+..++ + ..|+.++|.+.+.+
T Consensus 187 ------------ia~~----Egi~i~~eAL~lIa~~s---~G-slR~alslLdqli~y~---~-~~It~e~V~~llg~ 240 (491)
T PRK14964 187 ------------IAKK----ENIEHDEESLKLIAENS---SG-SMRNALFLLEQAAIYS---N-NKISEKSVRDLLGC 240 (491)
T ss_pred ------------HHHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHcc
Confidence 1111 26889999999887665 33 6798888887765433 3 48999999887654
No 138
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=8.3e-12 Score=141.80 Aligned_cols=236 Identities=17% Similarity=0.234 Sum_probs=143.7
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCC-CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC-------CCCc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT-------CPDE 160 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~-~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~-------~~~~ 160 (765)
++|-.|.+++||+.+++.|.-+..... .+.+||+||+|||||++||.+++.+. |... .|-.
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-----------c~~~~~~~~~~~~C~ 83 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-----------CSALITENTTIKTCE 83 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-----------CccccccCcCcCCCC
Confidence 567789999999999998854433322 35799999999999999999999764 3210 1111
Q ss_pred ccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHH
Q 004256 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (765)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~ 240 (765)
.|..|...... ....++.+..... .|--++.. +.... ...| ..+...++||||++.|+.+.
T Consensus 84 ~C~~C~~i~~~----------~h~Dv~eidaas~----~~vd~Ir~-iie~a-~~~P---~~~~~KVvIIDEa~~Ls~~a 144 (507)
T PRK06645 84 QCTNCISFNNH----------NHPDIIEIDAASK----TSVDDIRR-IIESA-EYKP---LQGKHKIFIIDEVHMLSKGA 144 (507)
T ss_pred CChHHHHHhcC----------CCCcEEEeeccCC----CCHHHHHH-HHHHH-Hhcc---ccCCcEEEEEEChhhcCHHH
Confidence 23333331100 1223333332110 11101111 10000 0111 12356799999999999999
Q ss_pred HHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHH
Q 004256 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (765)
Q Consensus 241 q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~ 320 (765)
++.|+..|++. |..+++|.+++ +...+.+.+..|+.. +++. ++..++..+++...
T Consensus 145 ~naLLk~LEep-------------p~~~vfI~aTt-e~~kI~~tI~SRc~~-~ef~-~ls~~el~~~L~~i--------- 199 (507)
T PRK06645 145 FNALLKTLEEP-------------PPHIIFIFATT-EVQKIPATIISRCQR-YDLR-RLSFEEIFKLLEYI--------- 199 (507)
T ss_pred HHHHHHHHhhc-------------CCCEEEEEEeC-ChHHhhHHHHhcceE-EEcc-CCCHHHHHHHHHHH---------
Confidence 99999999863 23456666665 445677889999854 3665 44554433333211
Q ss_pred HhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 321 ~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
+.. .++.++++++++|+..+ +. +.|..++++..+..++.-. ...|+.++|++.+.
T Consensus 200 ----------------~~~----egi~ie~eAL~~Ia~~s---~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~llg 254 (507)
T PRK06645 200 ----------------TKQ----ENLKTDIEALRIIAYKS---EG-SARDAVSILDQAASMSAKS-DNIISPQVINQMLG 254 (507)
T ss_pred ----------------HHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHHC
Confidence 111 25789999999887653 33 6899999998876654322 23799999988875
Q ss_pred HhcC
Q 004256 401 LVIL 404 (765)
Q Consensus 401 lvl~ 404 (765)
.+..
T Consensus 255 ~~~~ 258 (507)
T PRK06645 255 LVDS 258 (507)
T ss_pred CCCH
Confidence 4433
No 139
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=7.3e-12 Score=144.46 Aligned_cols=230 Identities=20% Similarity=0.205 Sum_probs=136.1
Q ss_pred cCCCCCCCceeechHHHHHHHHhhhcCCCC-cEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCC---cccc
Q 004256 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIG-GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD---EWED 163 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l~~~~~~~~-~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~---~~~~ 163 (765)
|+++..|++||||+.+++.|.-........ .+||+|++|||||++|+.|++.+. |...... ..|.
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-----------C~~~~~~~pCg~C~ 77 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-----------CENAQHGEPCGVCQ 77 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-----------ccCCCCCCCCcccH
Confidence 356778999999999999985444444434 489999999999999999999763 3322111 2233
Q ss_pred cccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
.|...... .-..++.+.... -.|.-++ +.+... ....|. .+...|+||||++.|+...++.
T Consensus 78 sCr~i~~g----------~~~DvlEidaAs----~~gVd~I-Relle~-a~~~P~---~gk~KVIIIDEad~Ls~~A~NA 138 (709)
T PRK08691 78 SCTQIDAG----------RYVDLLEIDAAS----NTGIDNI-REVLEN-AQYAPT---AGKYKVYIIDEVHMLSKSAFNA 138 (709)
T ss_pred HHHHHhcc----------CccceEEEeccc----cCCHHHH-HHHHHH-HHhhhh---hCCcEEEEEECccccCHHHHHH
Confidence 33321100 001122222110 0010000 000000 001110 1245699999999999999999
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhc
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~ 323 (765)
||..|++-. ..+++|.++| +...+...+++|+-.+ .+. +...+. |.....
T Consensus 139 LLKtLEEPp-------------~~v~fILaTt-d~~kL~~TIrSRC~~f-~f~-~Ls~ee---I~~~L~----------- 188 (709)
T PRK08691 139 MLKTLEEPP-------------EHVKFILATT-DPHKVPVTVLSRCLQF-VLR-NMTAQQ---VADHLA----------- 188 (709)
T ss_pred HHHHHHhCC-------------CCcEEEEEeC-CccccchHHHHHHhhh-hcC-CCCHHH---HHHHHH-----------
Confidence 999998632 2456666666 5556778888998443 444 333333 322111
Q ss_pred cccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 324 ~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
.++.. .++.++++++..|++.+. . +.|..+.++..+..+ |...|+.++|...+.
T Consensus 189 -----------~Il~k----Egi~id~eAL~~Ia~~A~---G-slRdAlnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 189 -----------HVLDS----EKIAYEPPALQLLGRAAA---G-SMRDALSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred -----------HHHHH----cCCCcCHHHHHHHHHHhC---C-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 11221 258899999999987762 2 689999998765543 445788888776543
No 140
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.36 E-value=3e-12 Score=151.88 Aligned_cols=224 Identities=20% Similarity=0.222 Sum_probs=140.5
Q ss_pred CCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccccccc
Q 004256 93 PLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYD 172 (765)
Q Consensus 93 ~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (765)
.++.++|.++.++.+.-........++||+||||||||++|+.++...-... ++...
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~-vP~~l---------------------- 240 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGD-VPEVM---------------------- 240 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcC-CCchh----------------------
Confidence 3567999999888884433334567899999999999999999997642100 00000
Q ss_pred ccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCccc----CCceeeccCCeEeccccccC---------CHH
Q 004256 173 TAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQ----PGLLAEAHRGVLYIDEINLL---------DEG 239 (765)
Q Consensus 173 ~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~----~Gll~~A~~GiL~lDEi~~L---------~~~ 239 (765)
....++.+..+ .-+.|.. +.|..... ...+....++|||||||+.| ..+
T Consensus 241 ---------~~~~~~~l~~~---~llaG~~------~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d 302 (758)
T PRK11034 241 ---------ADCTIYSLDIG---SLLAGTK------YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD 302 (758)
T ss_pred ---------cCCeEEeccHH---HHhcccc------hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHH
Confidence 12233332221 1122210 01111100 11123345689999999987 234
Q ss_pred HHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC----CcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHH
Q 004256 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (765)
Q Consensus 240 ~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg----~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~ 315 (765)
+.+.|..++..|. +++|++||+++. ..+++|.+||.. |.|. +|+.+++.+|+.....
T Consensus 303 ~~nlLkp~L~~g~---------------i~vIgATt~~E~~~~~~~D~AL~rRFq~-I~v~-ePs~~~~~~IL~~~~~-- 363 (758)
T PRK11034 303 AANLIKPLLSSGK---------------IRVIGSTTYQEFSNIFEKDRALARRFQK-IDIT-EPSIEETVQIINGLKP-- 363 (758)
T ss_pred HHHHHHHHHhCCC---------------eEEEecCChHHHHHHhhccHHHHhhCcE-EEeC-CCCHHHHHHHHHHHHH--
Confidence 5566777777665 688999998653 468999999975 5787 5688888888763221
Q ss_pred HhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHHHc----CC
Q 004256 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHR----AELYAARVAKCLAALE----GR 387 (765)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~R----a~i~llr~A~a~A~l~----gr 387 (765)
.|..-.+|.+++++++.+++++.++- +.| ..+.++..|++...+. ..
T Consensus 364 -----------------------~ye~~h~v~i~~~al~~a~~ls~ryi--~~r~lPdKaidlldea~a~~~~~~~~~~~ 418 (758)
T PRK11034 364 -----------------------KYEAHHDVRYTAKAVRAAVELAVKYI--NDRHLPDKAIDVIDEAGARARLMPVSKRK 418 (758)
T ss_pred -----------------------HhhhccCCCcCHHHHHHHHHHhhccc--cCccChHHHHHHHHHHHHhhccCcccccc
Confidence 12223468888888888887776642 345 6777887777655442 23
Q ss_pred CCCCHHHHHHHHHH
Q 004256 388 EKVNVDDLKKAVEL 401 (765)
Q Consensus 388 ~~Vt~edv~~A~~l 401 (765)
..|+.+||.+++..
T Consensus 419 ~~v~~~~i~~v~~~ 432 (758)
T PRK11034 419 KTVNVADIESVVAR 432 (758)
T ss_pred cccChhhHHHHHHH
Confidence 46888999887764
No 141
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1e-11 Score=148.44 Aligned_cols=166 Identities=23% Similarity=0.208 Sum_probs=100.4
Q ss_pred cCCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccc---c
Q 004256 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE---D 163 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~ 163 (765)
|+++..|++||||+.+++.|.-........| +||+|++|||||++|+.|++.+ +|........| .
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L-----------~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL-----------NCVEGPTSTPCGECD 76 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh-----------CcccCCCCCCCcccH
Confidence 3677889999999999998855544444556 7999999999999999999976 45322222234 3
Q ss_pred cccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
.|+..... .. ....|+.+..... ..+|--+.+... ..+.+ ......|+||||++.|+...++.
T Consensus 77 sC~~~~~g-~~-------~~~dv~eidaas~-----~~Vd~iR~l~~~-~~~~p---~~~~~KV~IIDEad~lt~~a~Na 139 (824)
T PRK07764 77 SCVALAPG-GP-------GSLDVTEIDAASH-----GGVDDARELRER-AFFAP---AESRYKIFIIDEAHMVTPQGFNA 139 (824)
T ss_pred HHHHHHcC-CC-------CCCcEEEeccccc-----CCHHHHHHHHHH-HHhch---hcCCceEEEEechhhcCHHHHHH
Confidence 44432110 00 1122333322110 011111111100 00111 12345699999999999999999
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeec
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~ 296 (765)
||++|++- |..++||.+++ +...+.+.|..|+.++ .+.
T Consensus 140 LLK~LEEp-------------P~~~~fIl~tt-~~~kLl~TIrSRc~~v-~F~ 177 (824)
T PRK07764 140 LLKIVEEP-------------PEHLKFIFATT-EPDKVIGTIRSRTHHY-PFR 177 (824)
T ss_pred HHHHHhCC-------------CCCeEEEEEeC-ChhhhhHHHHhheeEE-Eee
Confidence 99999973 23455666555 3345778899998654 565
No 142
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.1e-12 Score=134.97 Aligned_cols=137 Identities=28% Similarity=0.383 Sum_probs=95.8
Q ss_pred ceeechHHHHHHHHhhhc---------------CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCc
Q 004256 96 AVVGQDAIKTALLLGAID---------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (765)
Q Consensus 96 ~ivG~~~~~~aL~l~~~~---------------~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~ 160 (765)
-+|||+.+|+.|.++..| -...+||+.||+|||||.||+.|++.+.
T Consensus 62 YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~Ln------------------- 122 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILN------------------- 122 (408)
T ss_pred heecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhC-------------------
Confidence 489999999987332221 1346799999999999999999999873
Q ss_pred ccccccccccccccCcccccccCCCeEeCC-CCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCC--
Q 004256 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIP-LGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD-- 237 (765)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~-~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~-- 237 (765)
.||..-+ ..+||...+|. |+|.-+..= ...--.-.++|..||+|||||+.+.
T Consensus 123 -----------------------VPFaiADATtLTEAGYVGE-DVENillkL-lqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 123 -----------------------VPFAIADATTLTEAGYVGE-DVENILLKL-LQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred -----------------------CCeeeccccchhhccccch-hHHHHHHHH-HHHcccCHHHHhCCeEEEechhhhhcc
Confidence 4665433 33677777773 433322100 0001223567889999999999874
Q ss_pred ------------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC
Q 004256 238 ------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP 276 (765)
Q Consensus 238 ------------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~ 276 (765)
..+|.+||..++.-...|...|+...-.-.|+-|-|+|.
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NI 228 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNI 228 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccce
Confidence 379999999998877778877776544446777888886
No 143
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=9.5e-12 Score=144.18 Aligned_cols=228 Identities=22% Similarity=0.232 Sum_probs=133.1
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCC---CCccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC---PDEWEDG 164 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~ 164 (765)
+++..|++||||+.+++.|.-+.......| +||+|++|||||++||.+++.+. |.... |-.-|..
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~-----------c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN-----------CETGITATPCGECDN 78 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh-----------hccCCCCCCCCCCHH
Confidence 567789999999999998854444444555 58999999999999999999763 43211 2123344
Q ss_pred ccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHH
Q 004256 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (765)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~L 244 (765)
|...... .-..|+.+.... . .|--++ +.+... ....| ......|+||||++.|+.+.++.|
T Consensus 79 C~~i~~g----------~~~D~ieidaas-~---~~Vddi-R~li~~-~~~~p---~~g~~KV~IIDEah~Ls~~a~NAL 139 (647)
T PRK07994 79 CREIEQG----------RFVDLIEIDAAS-R---TKVEDT-RELLDN-VQYAP---ARGRFKVYLIDEVHMLSRHSFNAL 139 (647)
T ss_pred HHHHHcC----------CCCCceeecccc-c---CCHHHH-HHHHHH-HHhhh---hcCCCEEEEEechHhCCHHHHHHH
Confidence 4432210 111233332211 0 010000 111000 00111 012345999999999999999999
Q ss_pred HHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcc
Q 004256 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (765)
Q Consensus 245 l~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~ 324 (765)
|..|++- |..+++|.+|+ +...+.+.+++|+-. +.+. |...++ |.....+
T Consensus 140 LKtLEEP-------------p~~v~FIL~Tt-~~~kLl~TI~SRC~~-~~f~-~Ls~~e---i~~~L~~----------- 189 (647)
T PRK07994 140 LKTLEEP-------------PEHVKFLLATT-DPQKLPVTILSRCLQ-FHLK-ALDVEQ---IRQQLEH----------- 189 (647)
T ss_pred HHHHHcC-------------CCCeEEEEecC-CccccchHHHhhheE-eeCC-CCCHHH---HHHHHHH-----------
Confidence 9999983 23455555555 556788899999643 3555 334443 3322111
Q ss_pred ccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004256 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 325 ~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
++.. .++.++++++..|+.++ ++ +.|..+.++..+.+. +...|+.++|...+
T Consensus 190 -----------il~~----e~i~~e~~aL~~Ia~~s---~G-s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 190 -----------ILQA----EQIPFEPRALQLLARAA---DG-SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred -----------HHHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 1111 14778888888886553 22 578888888654322 33457777766544
No 144
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.36 E-value=2.2e-11 Score=125.82 Aligned_cols=207 Identities=13% Similarity=0.082 Sum_probs=123.6
Q ss_pred CCCCCCceeec--hHHHHHHH-HhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccc
Q 004256 90 QFFPLAAVVGQ--DAIKTALL-LGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (765)
Q Consensus 90 ~~~~f~~ivG~--~~~~~aL~-l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (765)
.++.|+++++. +.+...+. +..-.....+++|+||+|||||++|++++..+..
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~------------------------ 68 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY------------------------ 68 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh------------------------
Confidence 35668887733 34444442 2121234578999999999999999999987532
Q ss_pred ccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHH
Q 004256 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (765)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~ 246 (765)
...+++.+.+...... + . ...++.+|||||++.++...+..|+.
T Consensus 69 ---------------~~~~~~~i~~~~~~~~-~------------------~--~~~~~~~liiDdi~~l~~~~~~~L~~ 112 (227)
T PRK08903 69 ---------------GGRNARYLDAASPLLA-F------------------D--FDPEAELYAVDDVERLDDAQQIALFN 112 (227)
T ss_pred ---------------CCCcEEEEehHHhHHH-H------------------h--hcccCCEEEEeChhhcCchHHHHHHH
Confidence 1233343333221100 0 0 01245799999999999999999999
Q ss_pred HHHcCceEEEeCCeeEEeeCceEEEEeecC--CCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcc
Q 004256 247 VLTEGVNIVEREGISFKHPCKPLLIATYNP--EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (765)
Q Consensus 247 ~l~~~~~~v~r~G~~~~~p~~~~lIat~N~--~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~ 324 (765)
+++... .. ...++|.+++. ....+.++|++||.....+.+|++.++ .++..+ ..+
T Consensus 113 ~~~~~~----~~-------~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~-~~~~~l-~~~---------- 169 (227)
T PRK08903 113 LFNRVR----AH-------GQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDA-DKIAAL-KAA---------- 169 (227)
T ss_pred HHHHHH----Hc-------CCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHH-HHHHHH-HHH----------
Confidence 886522 00 11223344332 234577999999954334555666654 333221 111
Q ss_pred ccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 325 ~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
... ..+.++++++++|+. .... +.|.++.+++.-...|...+ ..||...+++++.
T Consensus 170 ------------~~~----~~v~l~~~al~~L~~-~~~g---n~~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 170 ------------AAE----RGLQLADEVPDYLLT-HFRR---DMPSLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred ------------HHH----cCCCCCHHHHHHHHH-hccC---CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 111 137788888888876 2333 45777777777665565555 5899999888864
No 145
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.35 E-value=6.7e-12 Score=129.37 Aligned_cols=208 Identities=13% Similarity=0.096 Sum_probs=120.4
Q ss_pred CCCCCceee--chHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccc
Q 004256 91 FFPLAAVVG--QDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (765)
Q Consensus 91 ~~~f~~ivG--~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (765)
.+.|+.+++ +..++.++.-.+......+|+|+||+|||||++|++++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~-------------------------- 64 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE-------------------------- 64 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh--------------------------
Confidence 355677763 4456777743333445678999999999999999999987542
Q ss_pred ccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHH--HHHHHH
Q 004256 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI--SNLLLN 246 (765)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~--q~~Ll~ 246 (765)
...+++.+++......... .. ..+. ..++|||||++.++... +..|..
T Consensus 65 -------------~~~~~~~i~~~~~~~~~~~-------~~--------~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~ 114 (226)
T TIGR03420 65 -------------RGKSAIYLPLAELAQADPE-------VL--------EGLE--QADLVCLDDVEAIAGQPEWQEALFH 114 (226)
T ss_pred -------------cCCcEEEEeHHHHHHhHHH-------HH--------hhcc--cCCEEEEeChhhhcCChHHHHHHHH
Confidence 1223443333321111100 00 0011 23699999999998744 888888
Q ss_pred HHHcCceEEEeCCeeEEeeCceEEEEeecCCCCC--cc-hHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhc
Q 004256 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV--VR-EHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (765)
Q Consensus 247 ~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~--l~-~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~ 323 (765)
+++... .. +..+|.|+|..... +. +.|.+||.....+.+|+..+ .++..+...+.
T Consensus 115 ~l~~~~----~~--------~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~--~e~~~~l~~~~-------- 172 (226)
T TIGR03420 115 LYNRVR----EA--------GGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSD--EEKIAALQSRA-------- 172 (226)
T ss_pred HHHHHH----Hc--------CCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCH--HHHHHHHHHHH--------
Confidence 876422 00 12355566543332 33 78999996333345555544 33333221111
Q ss_pred cccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004256 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 324 ~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
.. ..+.++++++++|+.. ... +.|.+..+++.+...+.-.| ..|+.+.+++++
T Consensus 173 --------------~~----~~~~~~~~~l~~L~~~-~~g---n~r~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 173 --------------AR----RGLQLPDEVADYLLRH-GSR---DMGSLMALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred --------------HH----cCCCCCHHHHHHHHHh-ccC---CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 00 1356777777777663 333 45777787777776555555 468888887765
No 146
>PLN03025 replication factor C subunit; Provisional
Probab=99.34 E-value=9e-12 Score=135.36 Aligned_cols=214 Identities=18% Similarity=0.204 Sum_probs=130.5
Q ss_pred cCCCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
+++|..|++++|++.++..|.-........++||+||||||||++|+++++.+.. ..
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-----------~~------------ 62 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-----------PN------------ 62 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-----------cc------------
Confidence 4577788999999999988854444445578999999999999999999987531 00
Q ss_pred cccccccCcccccccCCCeEeCCCCCcccceeeecccccc-cccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEES-VKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~-~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~ 246 (765)
....++.++.+ + ..| ++.-+. +..... ....+......+++|||++.|+...|+.|+.
T Consensus 63 --------------~~~~~~eln~s--d--~~~-~~~vr~~i~~~~~--~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~ 121 (319)
T PLN03025 63 --------------YKEAVLELNAS--D--DRG-IDVVRNKIKMFAQ--KKVTLPPGRHKIVILDEADSMTSGAQQALRR 121 (319)
T ss_pred --------------Cccceeeeccc--c--ccc-HHHHHHHHHHHHh--ccccCCCCCeEEEEEechhhcCHHHHHHHHH
Confidence 01112222221 1 111 000000 000000 0000111234699999999999999999999
Q ss_pred HHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcccc
Q 004256 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (765)
Q Consensus 247 ~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~ 326 (765)
.|+.-. ...++|.++|. ...+.++|.+|+.. +.+. |+..++..+.+..
T Consensus 122 ~lE~~~-------------~~t~~il~~n~-~~~i~~~L~SRc~~-i~f~-~l~~~~l~~~L~~---------------- 169 (319)
T PLN03025 122 TMEIYS-------------NTTRFALACNT-SSKIIEPIQSRCAI-VRFS-RLSDQEILGRLMK---------------- 169 (319)
T ss_pred HHhccc-------------CCceEEEEeCC-ccccchhHHHhhhc-ccCC-CCCHHHHHHHHHH----------------
Confidence 997521 23456667774 34667899999854 3565 3344433222221
Q ss_pred ccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004256 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 327 ~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
+... .++.+++++++++++.+ +. +.|..++.++.+. .|...|+.+++....
T Consensus 170 ---------i~~~----egi~i~~~~l~~i~~~~---~g-DlR~aln~Lq~~~-----~~~~~i~~~~v~~~~ 220 (319)
T PLN03025 170 ---------VVEA----EKVPYVPEGLEAIIFTA---DG-DMRQALNNLQATH-----SGFGFVNQENVFKVC 220 (319)
T ss_pred ---------HHHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH-----hcCCCCCHHHHHHHc
Confidence 1111 26889999999887654 33 5799999998433 244579999987543
No 147
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.5e-11 Score=140.63 Aligned_cols=229 Identities=17% Similarity=0.200 Sum_probs=137.5
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccc--
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL-- 165 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-- 165 (765)
.++..|++|+||+.+++.|.-+.......+ +||+||+|||||++|+.+++.+. |........|..|
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~-----------c~~~~~~~pCg~C~s 78 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN-----------CKTGVTAEPCNKCEN 78 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCcccHH
Confidence 567789999999999998854443333444 78999999999999999998763 4322222233333
Q ss_pred -cccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHH
Q 004256 166 -DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (765)
Q Consensus 166 -~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~L 244 (765)
..... + .-..++.+.... -.|.-++ +.+... ....| ...+..|+||||++.|+...++.|
T Consensus 79 C~~i~~----~------~~~dlieidaas----~~gvd~i-r~ii~~-~~~~p---~~g~~kViIIDEa~~ls~~a~naL 139 (546)
T PRK14957 79 CVAINN----N------SFIDLIEIDAAS----RTGVEET-KEILDN-IQYMP---SQGRYKVYLIDEVHMLSKQSFNAL 139 (546)
T ss_pred HHHHhc----C------CCCceEEeeccc----ccCHHHH-HHHHHH-HHhhh---hcCCcEEEEEechhhccHHHHHHH
Confidence 22110 0 011233332110 0111000 001000 00011 123456999999999999999999
Q ss_pred HHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcc
Q 004256 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (765)
Q Consensus 245 l~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~ 324 (765)
|..|++.. ..+.+|.+|+ +...+.+.+.+|+..+ ++. |...+.....+.
T Consensus 140 LK~LEepp-------------~~v~fIL~Tt-d~~kil~tI~SRc~~~-~f~-~Ls~~eI~~~L~--------------- 188 (546)
T PRK14957 140 LKTLEEPP-------------EYVKFILATT-DYHKIPVTILSRCIQL-HLK-HISQADIKDQLK--------------- 188 (546)
T ss_pred HHHHhcCC-------------CCceEEEEEC-ChhhhhhhHHHheeeE-EeC-CCCHHHHHHHHH---------------
Confidence 99999842 2345565555 4566667799999554 665 444443222211
Q ss_pred ccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 325 ~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
.++.. .++.+++++++.|+..+ +. +.|..++++..+..+ .+ ..|+.++|++++.
T Consensus 189 ----------~il~~----egi~~e~~Al~~Ia~~s---~G-dlR~alnlLek~i~~---~~-~~It~~~V~~~l~ 242 (546)
T PRK14957 189 ----------IILAK----ENINSDEQSLEYIAYHA---KG-SLRDALSLLDQAISF---CG-GELKQAQIKQMLG 242 (546)
T ss_pred ----------HHHHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHh---cc-CCCCHHHHHHHHc
Confidence 11222 25789999999887665 33 679999998876543 23 5799999987654
No 148
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.4e-11 Score=140.20 Aligned_cols=232 Identities=18% Similarity=0.170 Sum_probs=139.0
Q ss_pred cCCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccc--
Q 004256 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG-- 164 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 164 (765)
++++..|++|+||+.+++.|.-........| +||+||+|||||++|+.+++.+ +|.......+|..
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l-----------~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSL-----------NCAQGPTATPCGVCE 74 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-----------ccccCCCCCcccccH
Confidence 3567789999999999999865554445566 6999999999999999999876 4532222234443
Q ss_pred -ccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 165 -LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
|..... +.. ....++.+..... +++|--+.+.. ...+.| ..+...|++|||++.|+...++.
T Consensus 75 ~C~~i~~-~~~-------~~~dvieidaas~-----~gvd~iRel~~-~~~~~P---~~~~~KVvIIDEah~Lt~~A~NA 137 (584)
T PRK14952 75 SCVALAP-NGP-------GSIDVVELDAASH-----GGVDDTRELRD-RAFYAP---AQSRYRIFIVDEAHMVTTAGFNA 137 (584)
T ss_pred HHHHhhc-ccC-------CCceEEEeccccc-----cCHHHHHHHHH-HHHhhh---hcCCceEEEEECCCcCCHHHHHH
Confidence 433110 000 1223444432210 01111111100 001111 12355699999999999999999
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhc
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~ 323 (765)
||..|++- |..+++|.+++ +...+.+.+..|... +++. +...+ ++..+...
T Consensus 138 LLK~LEEp-------------p~~~~fIL~tt-e~~kll~TI~SRc~~-~~F~-~l~~~---~i~~~L~~---------- 188 (584)
T PRK14952 138 LLKIVEEP-------------PEHLIFIFATT-EPEKVLPTIRSRTHH-YPFR-LLPPR---TMRALIAR---------- 188 (584)
T ss_pred HHHHHhcC-------------CCCeEEEEEeC-ChHhhHHHHHHhceE-EEee-CCCHH---HHHHHHHH----------
Confidence 99999973 33456666655 446778899999643 3665 33333 23322111
Q ss_pred cccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004256 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 324 ~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
++.. .++.++++++.+++..+ +. +.|..++++..... ..+...|+.+++...+
T Consensus 189 ------------i~~~----egi~i~~~al~~Ia~~s---~G-dlR~aln~Ldql~~---~~~~~~It~~~v~~ll 241 (584)
T PRK14952 189 ------------ICEQ----EGVVVDDAVYPLVIRAG---GG-SPRDTLSVLDQLLA---GAADTHVTYQRALGLL 241 (584)
T ss_pred ------------HHHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHh---ccCCCCcCHHHHHHHH
Confidence 1111 14788888888876543 33 67888888886543 3345678888876653
No 149
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.32 E-value=4.9e-12 Score=152.13 Aligned_cols=154 Identities=19% Similarity=0.257 Sum_probs=103.9
Q ss_pred CCCCCceeechHHHHHHHHhhh-------------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCC
Q 004256 91 FFPLAAVVGQDAIKTALLLGAI-------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~l~~~-------------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~ 157 (765)
...|.+|.|.+.++..|.-... .....+|||+||||||||++|++++..+.
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~---------------- 512 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG---------------- 512 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC----------------
Confidence 4568899999999988732111 11245699999999999999999998753
Q ss_pred CCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceee---ccCCeEeccccc
Q 004256 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDEIN 234 (765)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~---A~~GiL~lDEi~ 234 (765)
.+|+.+........++|.- ++.+ .-++.. ...+|||||||+
T Consensus 513 --------------------------~~fi~v~~~~l~~~~vGes--e~~i--------~~~f~~A~~~~p~iifiDEid 556 (733)
T TIGR01243 513 --------------------------ANFIAVRGPEILSKWVGES--EKAI--------REIFRKARQAAPAIIFFDEID 556 (733)
T ss_pred --------------------------CCEEEEehHHHhhcccCcH--HHHH--------HHHHHHHHhcCCEEEEEEChh
Confidence 4566655443333444421 0100 111222 234799999998
Q ss_pred cCC------------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCC
Q 004256 235 LLD------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMT 300 (765)
Q Consensus 235 ~L~------------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~ 300 (765)
.|- ..+.+.||..|+.-. ...+++||+||| ....++++++. ||+..+.+.. |+
T Consensus 557 ~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~-----------~~~~v~vI~aTn-~~~~ld~allRpgRfd~~i~v~~-Pd 623 (733)
T TIGR01243 557 AIAPARGARFDTSVTDRIVNQLLTEMDGIQ-----------ELSNVVVIAATN-RPDILDPALLRPGRFDRLILVPP-PD 623 (733)
T ss_pred hhhccCCCCCCccHHHHHHHHHHHHhhccc-----------CCCCEEEEEeCC-ChhhCCHhhcCCCccceEEEeCC-cC
Confidence 772 245677777776311 123689999999 56678899986 9999988884 58
Q ss_pred HhhHHHHHH
Q 004256 301 FEDRVAAVG 309 (765)
Q Consensus 301 ~e~r~dI~~ 309 (765)
.+.|.+|..
T Consensus 624 ~~~R~~i~~ 632 (733)
T TIGR01243 624 EEARKEIFK 632 (733)
T ss_pred HHHHHHHHH
Confidence 888888875
No 150
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.31 E-value=4.2e-11 Score=131.08 Aligned_cols=232 Identities=17% Similarity=0.144 Sum_probs=127.3
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcc-hhcccccCCCCCCCCcccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIE-VVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
++|..|++|+|++.++..|.-..-.+...++||+||+|||||++|+++++.+.... ......+||.-.. ..+..
T Consensus 9 y~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~-----~~~~~ 83 (337)
T PRK12402 9 YRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF-----DQGKK 83 (337)
T ss_pred hCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh-----hcchh
Confidence 56677899999999999985444444445899999999999999999998764211 0001112221000 00000
Q ss_pred cccccccCcccccccCCCeEe-CCC----CCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQ-IPL----GVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~-l~~----~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~ 242 (765)
.+. ....|.. +.. +....+++-.+ + .......| + .+...+|+|||++.++...++
T Consensus 84 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~--~-~~~~~vlilDe~~~l~~~~~~ 143 (337)
T PRK12402 84 YLV-----------EDPRFAHFLGTDKRIRSSKIDNFKHV-----L-KEYASYRP--L-SADYKTILLDNAEALREDAQQ 143 (337)
T ss_pred hhh-----------cCcchhhhhhhhhhhccchHHHHHHH-----H-HHHHhcCC--C-CCCCcEEEEeCcccCCHHHHH
Confidence 000 0000000 000 00000000000 0 00000000 0 134679999999999999999
Q ss_pred HHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHh
Q 004256 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (765)
Q Consensus 243 ~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~ 322 (765)
.|+..++... ...++|.+++ ....+.+.|..|+.. +.+. |++.++..+++..
T Consensus 144 ~L~~~le~~~-------------~~~~~Il~~~-~~~~~~~~L~sr~~~-v~~~-~~~~~~~~~~l~~------------ 195 (337)
T PRK12402 144 ALRRIMEQYS-------------RTCRFIIATR-QPSKLIPPIRSRCLP-LFFR-APTDDELVDVLES------------ 195 (337)
T ss_pred HHHHHHHhcc-------------CCCeEEEEeC-ChhhCchhhcCCceE-EEec-CCCHHHHHHHHHH------------
Confidence 9999987632 1234555554 223456788888744 3555 5555544333321
Q ss_pred ccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004256 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 323 ~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
++.. .++.+++++++.|+..+ +. +.|..+..+..+ + . +...|+.+||.+++
T Consensus 196 -------------~~~~----~~~~~~~~al~~l~~~~---~g-dlr~l~~~l~~~---~-~-~~~~It~~~v~~~~ 246 (337)
T PRK12402 196 -------------IAEA----EGVDYDDDGLELIAYYA---GG-DLRKAILTLQTA---A-L-AAGEITMEAAYEAL 246 (337)
T ss_pred -------------HHHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHH---H-H-cCCCCCHHHHHHHh
Confidence 1111 24679999999998776 22 567777666532 2 2 33479999998765
No 151
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=4.6e-11 Score=137.50 Aligned_cols=229 Identities=19% Similarity=0.215 Sum_probs=137.3
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC---CCCccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT---CPDEWEDG 164 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~---~~~~~~~~ 164 (765)
+++..|++|+||+.+++.|.-+.......| +||+||+|+|||++|+.+++.+. |... .|-..|..
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~-----------c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN-----------CETGVTATPCGVCSA 78 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCCCCHH
Confidence 566789999999999999865554444555 68999999999999999998763 4322 12223444
Q ss_pred ccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHH
Q 004256 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (765)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~L 244 (765)
|..... + .-..++.+..... .+.-++ +.+... ....| ......|+||||++.|+.+.++.|
T Consensus 79 C~~i~~----~------~~~d~~ei~~~~~----~~vd~i-r~l~~~-~~~~p---~~~~~kVvIIDEad~ls~~a~naL 139 (527)
T PRK14969 79 CLEIDS----G------RFVDLIEVDAASN----TQVDAM-RELLDN-AQYAP---TRGRFKVYIIDEVHMLSKSAFNAM 139 (527)
T ss_pred HHHHhc----C------CCCceeEeecccc----CCHHHH-HHHHHH-HhhCc---ccCCceEEEEcCcccCCHHHHHHH
Confidence 443210 0 0112222321100 010000 111000 01111 123456999999999999999999
Q ss_pred HHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcc
Q 004256 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (765)
Q Consensus 245 l~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~ 324 (765)
|..|++- |..+.+|.+|+ +...+.+.+.+|+-.+ .+. ++..+. |.....
T Consensus 140 LK~LEep-------------p~~~~fIL~t~-d~~kil~tI~SRc~~~-~f~-~l~~~~---i~~~L~------------ 188 (527)
T PRK14969 140 LKTLEEP-------------PEHVKFILATT-DPQKIPVTVLSRCLQF-NLK-QMPPPL---IVSHLQ------------ 188 (527)
T ss_pred HHHHhCC-------------CCCEEEEEEeC-ChhhCchhHHHHHHHH-hcC-CCCHHH---HHHHHH------------
Confidence 9999873 23455666665 4455666789998544 565 333332 332211
Q ss_pred ccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 325 ~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
.++.. .++.+++++++.|+..+ +. +.|..++++..+.++ |...|+.++|...+.
T Consensus 189 ----------~il~~----egi~~~~~al~~la~~s---~G-slr~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 189 ----------HILEQ----ENIPFDATALQLLARAA---AG-SMRDALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred ----------HHHHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 11111 14778888888887664 23 579999988765433 566899999887654
No 152
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=2.7e-11 Score=140.24 Aligned_cols=230 Identities=20% Similarity=0.252 Sum_probs=136.3
Q ss_pred cCCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCC-----CCcc
Q 004256 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC-----PDEW 161 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~-----~~~~ 161 (765)
++++..|++||||+.+++.|.-........| +||+|++|||||++|+.+++.+ ||...+ ...+
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L-----------nC~~~~~~~~~~~~p 77 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL-----------NCQGPDGQGGITATP 77 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-----------cCCCcccccCCCCCC
Confidence 3567789999999999998855444444555 5999999999999999999875 453211 1123
Q ss_pred cc---cccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCH
Q 004256 162 ED---GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE 238 (765)
Q Consensus 162 ~~---~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~ 238 (765)
|. .|..... + ....|+.++... . .|--++..-+ .. ....|- .....|++|||++.|+.
T Consensus 78 Cg~C~~C~~i~~----g------~h~D~~eldaas--~--~~Vd~iReli-~~-~~~~p~---~g~~KV~IIDEvh~Ls~ 138 (618)
T PRK14951 78 CGVCQACRDIDS----G------RFVDYTELDAAS--N--RGVDEVQQLL-EQ-AVYKPV---QGRFKVFMIDEVHMLTN 138 (618)
T ss_pred CCccHHHHHHHc----C------CCCceeecCccc--c--cCHHHHHHHH-HH-HHhCcc---cCCceEEEEEChhhCCH
Confidence 43 4433211 1 112233343221 0 1100110111 00 011110 12345999999999999
Q ss_pred HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhh
Q 004256 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (765)
Q Consensus 239 ~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~ 318 (765)
+.++.||..|++- |..+.+|.+++ +...+...+++|+-.+ ++. +...+. |......
T Consensus 139 ~a~NaLLKtLEEP-------------P~~~~fIL~Tt-d~~kil~TIlSRc~~~-~f~-~Ls~ee---i~~~L~~----- 194 (618)
T PRK14951 139 TAFNAMLKTLEEP-------------PEYLKFVLATT-DPQKVPVTVLSRCLQF-NLR-PMAPET---VLEHLTQ----- 194 (618)
T ss_pred HHHHHHHHhcccC-------------CCCeEEEEEEC-CchhhhHHHHHhceee-ecC-CCCHHH---HHHHHHH-----
Confidence 9999999999873 23455565555 4555667799998543 565 333333 3322111
Q ss_pred HHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 004256 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (765)
Q Consensus 319 ~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A 398 (765)
++.. .++.++++++++|+..+. . +.|..++++..+..+ |...|+.++|+.+
T Consensus 195 -----------------i~~~----egi~ie~~AL~~La~~s~---G-slR~al~lLdq~ia~----~~~~It~~~V~~~ 245 (618)
T PRK14951 195 -----------------VLAA----ENVPAEPQALRLLARAAR---G-SMRDALSLTDQAIAF----GSGQLQEAAVRQM 245 (618)
T ss_pred -----------------HHHH----cCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 1111 257889999998876542 2 678888887544432 4457998888776
Q ss_pred HH
Q 004256 399 VE 400 (765)
Q Consensus 399 ~~ 400 (765)
+.
T Consensus 246 Lg 247 (618)
T PRK14951 246 LG 247 (618)
T ss_pred Hc
Confidence 53
No 153
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.31 E-value=1.6e-11 Score=148.46 Aligned_cols=223 Identities=20% Similarity=0.170 Sum_probs=133.0
Q ss_pred CCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccccc
Q 004256 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (765)
+-.++.++|++..++.+..........+++|+||||||||++|+.|++.+..- .+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~-~v------------------------ 237 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAG-DV------------------------ 237 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhC-CC------------------------
Confidence 34577899999988887544445567789999999999999999999987530 00
Q ss_pred ccccCcccccccCCCeEeCCCCCcc--cceeeecccccccccCCCcccCCceeec----cCCeEeccccccCCH------
Q 004256 171 YDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLLDE------ 238 (765)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~l~~~~~e--~~L~G~~d~e~~~~~g~~~~~~Gll~~A----~~GiL~lDEi~~L~~------ 238 (765)
+.......++.+..+... ....|.+ +.. ...++..+ .+.|||||||+.|..
T Consensus 238 -------~~~l~~~~i~~l~l~~l~ag~~~~ge~--e~~--------lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~ 300 (852)
T TIGR03345 238 -------PPALRNVRLLSLDLGLLQAGASVKGEF--ENR--------LKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG 300 (852)
T ss_pred -------CccccCCeEEEeehhhhhcccccchHH--HHH--------HHHHHHHHHhcCCCeEEEEeChHHhccCCCccc
Confidence 000123344444433211 0111110 000 01122211 346999999999952
Q ss_pred --HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC----CcchHHHhhhhcceeecCCCCHhhHHHHHHHHH
Q 004256 239 --GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGIAT 312 (765)
Q Consensus 239 --~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg----~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~ 312 (765)
+..+.|+.+|+.|. +++|++|++++. +.+++|.+||.. |.|. +|+.+....|+.-..
T Consensus 301 ~~d~~n~Lkp~l~~G~---------------l~~IgaTT~~e~~~~~~~d~AL~rRf~~-i~v~-eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 301 QGDAANLLKPALARGE---------------LRTIAATTWAEYKKYFEKDPALTRRFQV-VKVE-EPDEETAIRMLRGLA 363 (852)
T ss_pred cccHHHHhhHHhhCCC---------------eEEEEecCHHHHhhhhhccHHHHHhCeE-EEeC-CCCHHHHHHHHHHHH
Confidence 23346888888775 689999998653 478999999975 4787 668888777764222
Q ss_pred HHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCC--CCCChHHHHHHHHHHHHHHcC-CCC
Q 004256 313 QFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC--QGHRAELYAARVAKCLAALEG-REK 389 (765)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~--~s~Ra~i~llr~A~a~A~l~g-r~~ 389 (765)
.. ++.-.+|.++++++..++.++.++-. .=+-..|.++..|++...+.. ...
T Consensus 364 ~~-------------------------~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p 418 (852)
T TIGR03345 364 PV-------------------------LEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATP 418 (852)
T ss_pred Hh-------------------------hhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCc
Confidence 11 11112466777777777776655411 112345666666666665542 223
Q ss_pred CCHHHHHH
Q 004256 390 VNVDDLKK 397 (765)
Q Consensus 390 Vt~edv~~ 397 (765)
+..+++..
T Consensus 419 ~~~~~~~~ 426 (852)
T TIGR03345 419 AALEDLRR 426 (852)
T ss_pred hhHHHHHH
Confidence 33444443
No 154
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=6.7e-11 Score=137.68 Aligned_cols=212 Identities=25% Similarity=0.312 Sum_probs=139.2
Q ss_pred ceeechHHHHHH----HHhhh---cCC--CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccc
Q 004256 96 AVVGQDAIKTAL----LLGAI---DRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (765)
Q Consensus 96 ~ivG~~~~~~aL----~l~~~---~~~--~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (765)
.|+||+.+..++ ..+.+ +|. .+..||.||+|+|||-+|++|+..+-.
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg------------------------ 547 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFG------------------------ 547 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcC------------------------
Confidence 589999988877 22222 221 345889999999999999999998863
Q ss_pred ccccccccCcccccccCCCeEeCCCC-----CcccceeeecccccccccCCC-cccCCceeecc----CCeEeccccccC
Q 004256 167 EKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAH----RGVLYIDEINLL 236 (765)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~l~~~-----~~e~~L~G~~d~e~~~~~g~~-~~~~Gll~~A~----~GiL~lDEi~~L 236 (765)
....++.++.+ -+.++|+|.-- |.. ..+-|.|..|- -.|++||||+..
T Consensus 548 ---------------~e~aliR~DMSEy~EkHsVSrLIGaPP-------GYVGyeeGG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 548 ---------------DEQALIRIDMSEYMEKHSVSRLIGAPP-------GYVGYEEGGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred ---------------CCccceeechHHHHHHHHHHHHhCCCC-------CCceeccccchhHhhhcCCCeEEEechhhhc
Confidence 23344444333 23345555310 111 01234555542 359999999999
Q ss_pred CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC---------------------------CCcchHHHhhh
Q 004256 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---------------------------GVVREHLLDRI 289 (765)
Q Consensus 237 ~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e---------------------------g~l~~~L~dRf 289 (765)
.+++++.||++|++|+.+-. .|..... .+.++|.|||... ..|+|+|+.|+
T Consensus 606 HpdV~nilLQVlDdGrLTD~-~Gr~VdF-rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRi 683 (786)
T COG0542 606 HPDVFNLLLQVLDDGRLTDG-QGRTVDF-RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRI 683 (786)
T ss_pred CHHHHHHHHHHhcCCeeecC-CCCEEec-ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhc
Confidence 99999999999999984321 2322222 3688999999720 13889999999
Q ss_pred hcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCC
Q 004256 290 AINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHR 369 (765)
Q Consensus 290 ~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~R 369 (765)
+-+|.+. |...+....|+.+.... ... + +. +.--.+.+++++.++|++.+..... |.|
T Consensus 684 d~II~F~-~L~~~~l~~Iv~~~L~~---l~~--------------~-L~--~~~i~l~~s~~a~~~l~~~gyd~~~-GAR 741 (786)
T COG0542 684 DEIIPFN-PLSKEVLERIVDLQLNR---LAK--------------R-LA--ERGITLELSDEAKDFLAEKGYDPEY-GAR 741 (786)
T ss_pred ccEEecc-CCCHHHHHHHHHHHHHH---HHH--------------H-HH--hCCceEEECHHHHHHHHHhccCCCc-Cch
Confidence 9766454 77777777777654322 111 1 11 1222478999999999999987544 788
Q ss_pred hHHHHHHH
Q 004256 370 AELYAARV 377 (765)
Q Consensus 370 a~i~llr~ 377 (765)
.+..+++-
T Consensus 742 pL~R~Iq~ 749 (786)
T COG0542 742 PLRRAIQQ 749 (786)
T ss_pred HHHHHHHH
Confidence 88777643
No 155
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.30 E-value=3.6e-11 Score=144.27 Aligned_cols=211 Identities=22% Similarity=0.272 Sum_probs=131.1
Q ss_pred CceeechHHHHHHHHhhh-------cC--CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccc
Q 004256 95 AAVVGQDAIKTALLLGAI-------DR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (765)
Q Consensus 95 ~~ivG~~~~~~aL~l~~~-------~~--~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (765)
..|+||+.+++.+..+.. ++ -.+.+||.||+|||||.+|++|+..+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~----------------------- 510 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV----------------------- 510 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC-----------------------
Confidence 358999999888732111 11 1235899999999999999999998741
Q ss_pred cccccccccCcccccccCCCeEeCCCC-----CcccceeeecccccccccCCCcccCCce----eeccCCeEeccccccC
Q 004256 166 DEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLL----AEAHRGVLYIDEINLL 236 (765)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~l~~~-----~~e~~L~G~~d~e~~~~~g~~~~~~Gll----~~A~~GiL~lDEi~~L 236 (765)
+|+.++++ .+...++|.-. + +-|. ..-|.+ .....+|||||||+.+
T Consensus 511 -------------------~~~~~d~se~~~~~~~~~lig~~~---g-yvg~--~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 511 -------------------HLERFDMSEYMEKHTVSRLIGAPP---G-YVGF--EQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred -------------------CeEEEeCchhhhcccHHHHhcCCC---C-Cccc--chhhHHHHHHHhCCCeEEEEechhhc
Confidence 12221111 11123333210 0 0000 011122 2234589999999999
Q ss_pred CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC------------------------CCcchHHHhhhhcc
Q 004256 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE------------------------GVVREHLLDRIAIN 292 (765)
Q Consensus 237 ~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e------------------------g~l~~~L~dRf~~~ 292 (765)
++++++.|+++|++|.++- ..|..... .++++|+|+|... ..|+|+|+.||+.+
T Consensus 566 ~~~~~~~Ll~~ld~g~~~d-~~g~~vd~-~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~V 643 (731)
T TIGR02639 566 HPDIYNILLQVMDYATLTD-NNGRKADF-RNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAI 643 (731)
T ss_pred CHHHHHHHHHhhccCeeec-CCCcccCC-CCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeE
Confidence 9999999999999998532 12222211 2577999998621 13789999999977
Q ss_pred eeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHH
Q 004256 293 LSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAEL 372 (765)
Q Consensus 293 v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i 372 (765)
+.+. |.+.+....|+.+... +... .+..+. -.+.++++++++|++.+..... |.|.+.
T Consensus 644 i~F~-pLs~e~l~~Iv~~~L~---~l~~---------------~l~~~~--~~l~i~~~a~~~La~~~~~~~~-GaR~l~ 701 (731)
T TIGR02639 644 IHFN-PLSEEVLEKIVQKFVD---ELSK---------------QLNEKN--IKLELTDDAKKYLAEKGYDEEF-GARPLA 701 (731)
T ss_pred EEcC-CCCHHHHHHHHHHHHH---HHHH---------------HHHhCC--CeEEeCHHHHHHHHHhCCCccc-CchHHH
Confidence 6555 7788877777765432 1111 111111 1478999999999987655544 678877
Q ss_pred HHHHH
Q 004256 373 YAARV 377 (765)
Q Consensus 373 ~llr~ 377 (765)
.+++.
T Consensus 702 r~i~~ 706 (731)
T TIGR02639 702 RVIQE 706 (731)
T ss_pred HHHHH
Confidence 76654
No 156
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=6.4e-11 Score=137.35 Aligned_cols=231 Identities=19% Similarity=0.188 Sum_probs=140.1
Q ss_pred cCCCCCCCceeechHHHHHHHHhhhcCC-CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC--------CC
Q 004256 88 GRQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT--------CP 158 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l~~~~~~-~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~--------~~ 158 (765)
++++..|++||||+.+++.|.-...... .+.+||+|++|+|||++|+.+++.+. |... +|
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~-----------c~~~~~~~~~~~~~ 85 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN-----------YEGPDGDGGPTIDL 85 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC-----------cCCccccCCCcccc
Confidence 3567789999999999999854333333 34599999999999999999999763 3211 12
Q ss_pred CcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCH
Q 004256 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE 238 (765)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~ 238 (765)
-.+|..|...... ...-|+.+.... -.|--++ +.+... ....| ..+...|++|||++.|+.
T Consensus 86 cg~c~~C~~i~~g----------~h~Dv~e~~a~s----~~gvd~I-ReIie~-~~~~P---~~a~~KVvIIDEad~Ls~ 146 (598)
T PRK09111 86 CGVGEHCQAIMEG----------RHVDVLEMDAAS----HTGVDDI-REIIES-VRYRP---VSARYKVYIIDEVHMLST 146 (598)
T ss_pred CcccHHHHHHhcC----------CCCceEEecccc----cCCHHHH-HHHHHH-HHhch---hcCCcEEEEEEChHhCCH
Confidence 2456666543211 112233332211 1111111 111100 01111 124567999999999999
Q ss_pred HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhh
Q 004256 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (765)
Q Consensus 239 ~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~ 318 (765)
..++.||..|++- |..++||.+++ +...+.+.+.+|+..+ ++. ++..+. +......
T Consensus 147 ~a~naLLKtLEeP-------------p~~~~fIl~tt-e~~kll~tI~SRcq~~-~f~-~l~~~e---l~~~L~~----- 202 (598)
T PRK09111 147 AAFNALLKTLEEP-------------PPHVKFIFATT-EIRKVPVTVLSRCQRF-DLR-RIEADV---LAAHLSR----- 202 (598)
T ss_pred HHHHHHHHHHHhC-------------CCCeEEEEEeC-ChhhhhHHHHhheeEE-Eec-CCCHHH---HHHHHHH-----
Confidence 9999999999873 23455666655 3344667899998543 565 333332 2221111
Q ss_pred HHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 004256 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (765)
Q Consensus 319 ~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A 398 (765)
++. ..++.++++++++|+..+ +. +.|..+.++..+..+ |...|+.++|+..
T Consensus 203 -----------------i~~----kegi~i~~eAl~lIa~~a---~G-dlr~al~~Ldkli~~----g~g~It~e~V~~l 253 (598)
T PRK09111 203 -----------------IAA----KEGVEVEDEALALIARAA---EG-SVRDGLSLLDQAIAH----GAGEVTAEAVRDM 253 (598)
T ss_pred -----------------HHH----HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHhh----cCCCcCHHHHHHH
Confidence 111 126889999988887665 33 678888888654433 3457999999887
Q ss_pred HHH
Q 004256 399 VEL 401 (765)
Q Consensus 399 ~~l 401 (765)
+..
T Consensus 254 lg~ 256 (598)
T PRK09111 254 LGL 256 (598)
T ss_pred hCC
Confidence 654
No 157
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=3e-11 Score=138.87 Aligned_cols=228 Identities=19% Similarity=0.210 Sum_probs=134.5
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCC-CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccc---cc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE---DG 164 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~-~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~~ 164 (765)
+++..|++|+||+.++..|.-...... ...+||+||+|||||++|+.|++.+. |........| +.
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-----------C~~~~~~~pCg~C~s 78 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-----------CETAPTGEPCNTCEQ 78 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-----------ccCCCCCCCCcccHH
Confidence 567789999999999888854333322 45688999999999999999999763 4322122233 34
Q ss_pred ccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHH
Q 004256 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (765)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~L 244 (765)
|...... ....++.+.... . .| +|--+.+.. .....+ ......|+||||++.|+...++.|
T Consensus 79 C~~i~~g----------~hpDv~eId~a~-~---~~-Id~iR~L~~-~~~~~p---~~g~~kVIIIDEad~Lt~~a~naL 139 (624)
T PRK14959 79 CRKVTQG----------MHVDVVEIDGAS-N---RG-IDDAKRLKE-AIGYAP---MEGRYKVFIIDEAHMLTREAFNAL 139 (624)
T ss_pred HHHHhcC----------CCCceEEEeccc-c---cC-HHHHHHHHH-HHHhhh---hcCCceEEEEEChHhCCHHHHHHH
Confidence 4332210 111233332110 0 01 110011100 000001 123456999999999999999999
Q ss_pred HHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcc
Q 004256 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (765)
Q Consensus 245 l~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~ 324 (765)
+.+|++-. ..+++|.++| +...+...|.+|+..+ .+. |...++..+++..
T Consensus 140 Lk~LEEP~-------------~~~ifILaTt-~~~kll~TI~SRcq~i-~F~-pLs~~eL~~~L~~-------------- 189 (624)
T PRK14959 140 LKTLEEPP-------------ARVTFVLATT-EPHKFPVTIVSRCQHF-TFT-RLSEAGLEAHLTK-------------- 189 (624)
T ss_pred HHHhhccC-------------CCEEEEEecC-ChhhhhHHHHhhhhcc-ccC-CCCHHHHHHHHHH--------------
Confidence 99998732 2456666666 4446667788998654 554 4444433322221
Q ss_pred ccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004256 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 325 ~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
++.. .++.+++++++.|+.++. . +.|..+.++..+ + ..|...|+.++|..++
T Consensus 190 -----------il~~----egi~id~eal~lIA~~s~---G-dlR~Al~lLeql--l--~~g~~~It~d~V~~~l 241 (624)
T PRK14959 190 -----------VLGR----EGVDYDPAAVRLIARRAA---G-SVRDSMSLLGQV--L--ALGESRLTIDGARGVL 241 (624)
T ss_pred -----------HHHH----cCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHH--H--HhcCCCcCHHHHHHHh
Confidence 1111 147789999998887652 2 578888888743 2 2355688888876543
No 158
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=1e-10 Score=135.61 Aligned_cols=231 Identities=24% Similarity=0.274 Sum_probs=138.8
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
.+|-.|++|+||+.+++.|.-+.......| +||+||+|||||++|+.+++.+ +|.......+|..|..
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal-----------~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV-----------NCLNPPDGEPCNECEI 78 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-----------cCCCCCCCCCCCccHH
Confidence 467789999999999999854444444455 7889999999999999999875 3432222234444432
Q ss_pred cccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~ 247 (765)
-..... + ....++.+..... .| +|--+.+.. .....| ..+...|++|||++.|....++.||..
T Consensus 79 C~~i~~-g------~~~dv~eidaas~----~~-vd~ir~i~~-~v~~~p---~~~~~kViIIDE~~~Lt~~a~naLLKt 142 (559)
T PRK05563 79 CKAITN-G------SLMDVIEIDAASN----NG-VDEIRDIRD-KVKYAP---SEAKYKVYIIDEVHMLSTGAFNALLKT 142 (559)
T ss_pred HHHHhc-C------CCCCeEEeecccc----CC-HHHHHHHHH-HHhhCc---ccCCeEEEEEECcccCCHHHHHHHHHH
Confidence 100000 0 1223444332110 00 000000000 001111 134566999999999999999999999
Q ss_pred HHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccc
Q 004256 248 LTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (765)
Q Consensus 248 l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~ 327 (765)
|++- |..+++|.+++ +...+.+.+.+|+..+ ++. |+..+. |..+....
T Consensus 143 LEep-------------p~~~ifIlatt-~~~ki~~tI~SRc~~~-~f~-~~~~~e---i~~~L~~i------------- 190 (559)
T PRK05563 143 LEEP-------------PAHVIFILATT-EPHKIPATILSRCQRF-DFK-RISVED---IVERLKYI------------- 190 (559)
T ss_pred hcCC-------------CCCeEEEEEeC-ChhhCcHHHHhHheEE-ecC-CCCHHH---HHHHHHHH-------------
Confidence 9863 33456665554 4467888899998654 565 344433 33222111
Q ss_pred cCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004256 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 328 ~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
+.. .++.+++++++.++..+ +. +.|..+.++..+... +...|+.+||..++
T Consensus 191 ---------~~~----egi~i~~~al~~ia~~s---~G-~~R~al~~Ldq~~~~----~~~~It~~~V~~vl 241 (559)
T PRK05563 191 ---------LDK----EGIEYEDEALRLIARAA---EG-GMRDALSILDQAISF----GDGKVTYEDALEVT 241 (559)
T ss_pred ---------HHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHh----ccCCCCHHHHHHHh
Confidence 111 25788999988887654 33 679999888766543 34579999887765
No 159
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=7.9e-12 Score=138.14 Aligned_cols=155 Identities=22% Similarity=0.312 Sum_probs=111.9
Q ss_pred CCCCceeechHHHHHHHHhhhcCC-------------CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCC
Q 004256 92 FPLAAVVGQDAIKTALLLGAIDRE-------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~~~~~-------------~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~ 158 (765)
..|++|-|++.++..|..+.+.|- ..||||+||||||||.||+++++..
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa------------------ 569 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA------------------ 569 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc------------------
Confidence 468899999999999876666552 3569999999999999999999874
Q ss_pred CcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEecccccc
Q 004256 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINL 235 (765)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~~ 235 (765)
...|+.+-....-..++|.- |+++ .-+|.+| ...|+|+|||+.
T Consensus 570 ------------------------g~NFisVKGPELlNkYVGES--ErAV--------R~vFqRAR~saPCVIFFDEiDa 615 (802)
T KOG0733|consen 570 ------------------------GANFISVKGPELLNKYVGES--ERAV--------RQVFQRARASAPCVIFFDEIDA 615 (802)
T ss_pred ------------------------cCceEeecCHHHHHHHhhhH--HHHH--------HHHHHHhhcCCCeEEEecchhh
Confidence 45677655444444556631 1211 1223333 246999999999
Q ss_pred CC-----------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCCHh
Q 004256 236 LD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFE 302 (765)
Q Consensus 236 L~-----------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~~e 302 (765)
|- ..+++.||.-|+... +|. .+.|||+|| .+..++++++. ||+-.+.|.+ |..+
T Consensus 616 L~p~R~~~~s~~s~RvvNqLLtElDGl~---~R~--------gV~viaATN-RPDiIDpAiLRPGRlDk~LyV~l-Pn~~ 682 (802)
T KOG0733|consen 616 LVPRRSDEGSSVSSRVVNQLLTELDGLE---ERR--------GVYVIAATN-RPDIIDPAILRPGRLDKLLYVGL-PNAE 682 (802)
T ss_pred cCcccCCCCchhHHHHHHHHHHHhcccc---ccc--------ceEEEeecC-CCcccchhhcCCCccCceeeecC-CCHH
Confidence 84 368899999887542 222 478999999 66667777775 8998888885 5888
Q ss_pred hHHHHHHHH
Q 004256 303 DRVAAVGIA 311 (765)
Q Consensus 303 ~r~dI~~l~ 311 (765)
+|.+|+...
T Consensus 683 eR~~ILK~~ 691 (802)
T KOG0733|consen 683 ERVAILKTI 691 (802)
T ss_pred HHHHHHHHH
Confidence 899998743
No 160
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.25 E-value=8.6e-11 Score=121.13 Aligned_cols=206 Identities=14% Similarity=0.081 Sum_probs=121.9
Q ss_pred cCCCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
++++..|.+++||+.+...|.-+.......+.|++||||||||+.|+++++.+. |..--|...|+.|..
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~-----------~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN-----------CEQLFPCRVLELNAS 97 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc-----------Cccccccchhhhccc
Confidence 366778999999999999996554443456799999999999999999999874 311111122222211
Q ss_pred cccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCC-CcccCCceeeccCCeEeccccccCCHHHHHHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGT-TVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~-~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~ 246 (765)
-- +....+. ..+.+ +++...... ....|.. ---|++|||.+.|+.+.|..|.+
T Consensus 98 de------------rGisvvr-------~Kik~---fakl~~~~~~~~~~~~~----~fKiiIlDEcdsmtsdaq~aLrr 151 (346)
T KOG0989|consen 98 DE------------RGISVVR-------EKIKN---FAKLTVLLKRSDGYPCP----PFKIIILDECDSMTSDAQAALRR 151 (346)
T ss_pred cc------------ccccchh-------hhhcC---HHHHhhccccccCCCCC----cceEEEEechhhhhHHHHHHHHH
Confidence 00 0000000 00000 000000000 0000100 11489999999999999999999
Q ss_pred HHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcccc
Q 004256 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (765)
Q Consensus 247 ~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~ 326 (765)
.|+.-. ...+|++|+ | .-..+...+..|..-+ .+ +++.+. +|+.+.. ++.
T Consensus 152 ~mE~~s-----------~~trFiLIc--n-ylsrii~pi~SRC~Kf-rF--k~L~d~--~iv~rL~-~Ia---------- 201 (346)
T KOG0989|consen 152 TMEDFS-----------RTTRFILIC--N-YLSRIIRPLVSRCQKF-RF--KKLKDE--DIVDRLE-KIA---------- 201 (346)
T ss_pred HHhccc-----------cceEEEEEc--C-ChhhCChHHHhhHHHh-cC--CCcchH--HHHHHHH-HHH----------
Confidence 999732 112455555 4 4456778899998765 34 444442 3333221 111
Q ss_pred ccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Q 004256 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (765)
Q Consensus 327 ~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~ 379 (765)
--.+|.++++++++|+.++ +. +.|.++.+++-+.
T Consensus 202 ---------------~~E~v~~d~~al~~I~~~S---~G-dLR~Ait~Lqsls 235 (346)
T KOG0989|consen 202 ---------------SKEGVDIDDDALKLIAKIS---DG-DLRRAITTLQSLS 235 (346)
T ss_pred ---------------HHhCCCCCHHHHHHHHHHc---CC-cHHHHHHHHHHhh
Confidence 1137999999999998775 33 6898888887654
No 161
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.25 E-value=6.5e-11 Score=120.50 Aligned_cols=134 Identities=26% Similarity=0.376 Sum_probs=106.7
Q ss_pred CCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCC------------CCCcchHHHhhhhcc
Q 004256 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------------EGVVREHLLDRIAIN 292 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~------------eg~l~~~L~dRf~~~ 292 (765)
.|+|||||++.|+-+....|..+|++-. .-++|.++|.. +.-++++|+||+-++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~i--------------aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Ii 362 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPI--------------APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLII 362 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCC--------------CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEE
Confidence 5899999999999999999999998754 34677888862 234678999999765
Q ss_pred eeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHH
Q 004256 293 LSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAEL 372 (765)
Q Consensus 293 v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i 372 (765)
.. .|++.++...|+.+. ....++.+.++++..+.++-... |.|..+
T Consensus 363 -rt-~~y~~~e~r~Ii~~R-----------------------------a~~E~l~~~e~a~~~l~~~gt~t---sLRy~v 408 (456)
T KOG1942|consen 363 -RT-LPYDEEEIRQIIKIR-----------------------------AQVEGLQVEEEALDLLAEIGTST---SLRYAV 408 (456)
T ss_pred -ee-ccCCHHHHHHHHHHH-----------------------------HhhhcceecHHHHHHHHhhccch---hHHHHH
Confidence 33 367777666666543 22347899999999998776555 789999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCC
Q 004256 373 YAARVAKCLAALEGREKVNVDDLKKAVELVILPR 406 (765)
Q Consensus 373 ~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~hR 406 (765)
.++--|..+|...|++.|..+|++++..|-+--+
T Consensus 409 qLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Dak 442 (456)
T KOG1942|consen 409 QLLTPASILAKTNGRKEISVEDVEEVTELFLDAK 442 (456)
T ss_pred HhcCHHHHHHHHcCCceeecccHHHHHHHHHhch
Confidence 9999999999999999999999999999866543
No 162
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.25 E-value=2.8e-11 Score=131.97 Aligned_cols=156 Identities=16% Similarity=0.224 Sum_probs=102.1
Q ss_pred ccCCeEeccccccCCH------------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeec---CCCCCcchHHHh
Q 004256 223 AHRGVLYIDEINLLDE------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYN---PEEGVVREHLLD 287 (765)
Q Consensus 223 A~~GiL~lDEi~~L~~------------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N---~~eg~l~~~L~d 287 (765)
++.||+|||||+.+.. .+|..||..++...+.+ +.|. . -..++.+||+-- ..+..|-|+|.-
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~~-v-~T~~ILFI~~GAF~~~kp~DlIPEl~G 322 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYGM-V-KTDHILFIAAGAFQLAKPSDLIPELQG 322 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-ccee-E-ECCceeEEecCCcCCCChhhccHHHhC
Confidence 5789999999998842 59999999998776554 2221 1 122455555422 134568899999
Q ss_pred hhhcceeecCCCCHhhHHHHHHHH-HHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHh----
Q 004256 288 RIAINLSADLPMTFEDRVAAVGIA-TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR---- 362 (765)
Q Consensus 288 Rf~~~v~i~~p~~~e~r~dI~~l~-~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~---- 362 (765)
||.+++.+. |.+.+....|+.-- .....++ ..++... --++.+++++++.|++.+..
T Consensus 323 R~Pi~v~L~-~L~~edL~rILteP~nsLikQy---------------~~Lf~~e--gv~L~Ftd~Al~~IA~~A~~~N~~ 384 (441)
T TIGR00390 323 RFPIRVELQ-ALTTDDFERILTEPKNSLIKQY---------------KALMKTE--GVNIEFSDEAIKRIAELAYNVNEK 384 (441)
T ss_pred ccceEEECC-CCCHHHHHHHhcCChhHHHHHH---------------HHHHhhc--CcEEEEeHHHHHHHHHHHHHhccc
Confidence 999999887 67777766665211 0111111 1111111 12368899999999999987
Q ss_pred -CCCCCCChHHHHHHHHHHHHHHcCCC------CCCHHHHHHHHH
Q 004256 363 -GGCQGHRAELYAARVAKCLAALEGRE------KVNVDDLKKAVE 400 (765)
Q Consensus 363 -~g~~s~Ra~i~llr~A~a~A~l~gr~------~Vt~edv~~A~~ 400 (765)
.++ |.|++..++.....-+.++.-. .|+.+.|...+.
T Consensus 385 ~~~i-GAR~LrtilE~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~ 428 (441)
T TIGR00390 385 TENI-GARRLHTVLERLLEDISFEAPDLSGQNITIDADYVSKKLG 428 (441)
T ss_pred cccc-chhhHHHHHHHHHHHHHhcCCCCCCCEEEECHHHHHhHHH
Confidence 355 8999999998888776665432 356666655544
No 163
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=1.7e-10 Score=131.28 Aligned_cols=229 Identities=18% Similarity=0.227 Sum_probs=137.2
Q ss_pred cCCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccc---c
Q 004256 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE---D 163 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~ 163 (765)
+++|-.|++|+||+.+++.|.-..-.....| .||+||+|+|||++|+++++.+- |.......+| .
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~-----------c~~~~~~~pC~~C~ 75 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALV-----------CEQGPSSTPCDTCI 75 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhc-----------CCCCCCCCCCcccH
Confidence 3567789999999999988854444444555 48999999999999999998763 3221111223 3
Q ss_pred cccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
.|..... + ....++.+.... .. |--++...+.+. ...| ..+...+++|||++.|+.+.++.
T Consensus 76 ~C~~~~~----~------~h~dv~eldaas--~~--gId~IRelie~~--~~~P---~~~~~KVvIIDEad~Lt~~A~NA 136 (535)
T PRK08451 76 QCQSALE----N------RHIDIIEMDAAS--NR--GIDDIRELIEQT--KYKP---SMARFKIFIIDEVHMLTKEAFNA 136 (535)
T ss_pred HHHHHhh----c------CCCeEEEecccc--cc--CHHHHHHHHHHH--hhCc---ccCCeEEEEEECcccCCHHHHHH
Confidence 3332110 0 112233332110 00 110111111100 0111 11345699999999999999999
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhc
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~ 323 (765)
||..|++- |..+++|.+++ +...+.+.|.+|.. .+++. |...+ ++.....+
T Consensus 137 LLK~LEEp-------------p~~t~FIL~tt-d~~kL~~tI~SRc~-~~~F~-~Ls~~---ei~~~L~~---------- 187 (535)
T PRK08451 137 LLKTLEEP-------------PSYVKFILATT-DPLKLPATILSRTQ-HFRFK-QIPQN---SIISHLKT---------- 187 (535)
T ss_pred HHHHHhhc-------------CCceEEEEEEC-ChhhCchHHHhhce-eEEcC-CCCHH---HHHHHHHH----------
Confidence 99999873 23445555555 45778899999964 34665 33332 33332211
Q ss_pred cccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004256 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 324 ~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
++.. .++.++++++++|+..+ ++ +.|..+.++..+...+ ...|+.++|.+.+
T Consensus 188 ------------Il~~----EGi~i~~~Al~~Ia~~s---~G-dlR~alnlLdqai~~~----~~~It~~~V~~~l 239 (535)
T PRK08451 188 ------------ILEK----EGVSYEPEALEILARSG---NG-SLRDTLTLLDQAIIYC----KNAITESKVADML 239 (535)
T ss_pred ------------HHHH----cCCCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHHh
Confidence 1111 25788999988887654 33 6899999987766543 3478888887654
No 164
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.24 E-value=8.6e-11 Score=130.21 Aligned_cols=246 Identities=18% Similarity=0.182 Sum_probs=140.0
Q ss_pred CCCCceeechHHHHHHHHh--h-h-cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcch-----hcccccCCCCCCCC-cc
Q 004256 92 FPLAAVVGQDAIKTALLLG--A-I-DREIGGIAISGRRGTAKTVMARGLHAILPPIEV-----VVGSIANADPTCPD-EW 161 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~--~-~-~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~-----~~~~~~~~~~~~~~-~~ 161 (765)
|-.+.++|++..++.|... . + ....++++|+||+|||||++++.+.+.+..... +..+.+||...... ..
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 3346799999988877322 1 1 233467999999999999999999876532100 33455666432110 00
Q ss_pred cccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceee-ccCCeEeccccccCCH--
Q 004256 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLLDE-- 238 (765)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~-A~~GiL~lDEi~~L~~-- 238 (765)
...+...+.. .+ ...| ..+.+..+++..+ + ..+.. ...-+|+|||++.|..
T Consensus 92 ~~~i~~~l~~--~~------~~~~----~~~~~~~~~~~~l------~--------~~l~~~~~~~vlvIDE~d~L~~~~ 145 (365)
T TIGR02928 92 LVELANQLRG--SG------EEVP----TTGLSTSEVFRRL------Y--------KELNERGDSLIIVLDEIDYLVGDD 145 (365)
T ss_pred HHHHHHHHhh--cC------CCCC----CCCCCHHHHHHHH------H--------HHHHhcCCeEEEEECchhhhccCC
Confidence 0000000000 00 0000 0001111111100 0 01111 1234789999999942
Q ss_pred -HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC--CCcchHHHhhhhc-ceeecCCCCHhhHHHHHHHHHHH
Q 004256 239 -GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAI-NLSADLPMTFEDRVAAVGIATQF 314 (765)
Q Consensus 239 -~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e--g~l~~~L~dRf~~-~v~i~~p~~~e~r~dI~~l~~~~ 314 (765)
++...|++..+... . ...++.+|+++|.-. ..+.+.+.+||.. .+.+. |++.++..+|+......
T Consensus 146 ~~~L~~l~~~~~~~~--~--------~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~-p~~~~e~~~il~~r~~~ 214 (365)
T TIGR02928 146 DDLLYQLSRARSNGD--L--------DNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFP-PYDAEELRDILENRAEK 214 (365)
T ss_pred cHHHHhHhccccccC--C--------CCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeC-CCCHHHHHHHHHHHHHh
Confidence 33333333311111 0 113577888888532 3577788889863 34454 67777777776532110
Q ss_pred HHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHH
Q 004256 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDD 394 (765)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~ed 394 (765)
.+. ...++++++++++..+...+. ..|..+.+++.|..+|..+++..|+.+|
T Consensus 215 --------------------------~~~-~~~~~~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~ 266 (365)
T TIGR02928 215 --------------------------AFY-DGVLDDGVIPLCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDH 266 (365)
T ss_pred --------------------------hcc-CCCCChhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 111 234788888988888776544 5799999999999999999999999999
Q ss_pred HHHHHHHh
Q 004256 395 LKKAVELV 402 (765)
Q Consensus 395 v~~A~~lv 402 (765)
|+.|+..+
T Consensus 267 v~~a~~~~ 274 (365)
T TIGR02928 267 VEKAQEKI 274 (365)
T ss_pred HHHHHHHH
Confidence 99998876
No 165
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.24 E-value=5e-11 Score=137.87 Aligned_cols=240 Identities=16% Similarity=0.109 Sum_probs=146.4
Q ss_pred CceeechHHHHHHH---Hhhhc-CCCCcE-EEECCCCcHHHHHHHHHHhhCCC------cchhcccccCCCCC-CCCccc
Q 004256 95 AAVVGQDAIKTALL---LGAID-REIGGI-AISGRRGTAKTVMARGLHAILPP------IEVVVGSIANADPT-CPDEWE 162 (765)
Q Consensus 95 ~~ivG~~~~~~aL~---l~~~~-~~~~~V-Li~Ge~GTGKt~lAr~l~~~l~~------~~~~~~~~~~~~~~-~~~~~~ 162 (765)
+.|.|++..++.|. ...+. ....++ +|+|+||||||++++.+.+.+.. +..+..+++||... .+....
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 67999999888772 22222 233345 69999999999999999876532 11233456777431 111110
Q ss_pred ccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccC--CeEeccccccCCHHH
Q 004256 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHR--GVLYIDEINLLDEGI 240 (765)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~--GiL~lDEi~~L~~~~ 240 (765)
..+...+ . ...| +.+....+++- .++. .+....+ -||+||||+.|....
T Consensus 835 qvI~qqL----~-------g~~P----~~GlsS~evLe------rLF~--------~L~k~~r~v~IIILDEID~L~kK~ 885 (1164)
T PTZ00112 835 QVLYKQL----F-------NKKP----PNALNSFKILD------RLFN--------QNKKDNRNVSILIIDEIDYLITKT 885 (1164)
T ss_pred HHHHHHH----c-------CCCC----CccccHHHHHH------HHHh--------hhhcccccceEEEeehHhhhCccH
Confidence 0000000 0 0000 00000000000 0000 0011112 279999999998777
Q ss_pred HHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCC--CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhh
Q 004256 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE--EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (765)
Q Consensus 241 q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~--eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~ 318 (765)
|..|+.++.--. . ....+.|||.+|.- ...+.+.+..||+...-+..|++.++..+|+......
T Consensus 886 QDVLYnLFR~~~--~--------s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~---- 951 (1164)
T PTZ00112 886 QKVLFTLFDWPT--K--------INSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN---- 951 (1164)
T ss_pred HHHHHHHHHHhh--c--------cCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh----
Confidence 788887776321 1 12358899999963 2456788889998642233588999999998643211
Q ss_pred HHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 004256 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (765)
Q Consensus 319 ~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A 398 (765)
+ ...++++++++++..++..++ ..|.++.+++.|..++ +...|+++||.+|
T Consensus 952 --------------------A-----~gVLdDdAIELIArkVAq~SG-DARKALDILRrAgEik---egskVT~eHVrkA 1002 (1164)
T PTZ00112 952 --------------------C-----KEIIDHTAIQLCARKVANVSG-DIRKALQICRKAFENK---RGQKIVPRDITEA 1002 (1164)
T ss_pred --------------------C-----CCCCCHHHHHHHHHhhhhcCC-HHHHHHHHHHHHHhhc---CCCccCHHHHHHH
Confidence 0 135899999999998777666 6899999999988763 4568999999999
Q ss_pred HHHhcCCC
Q 004256 399 VELVILPR 406 (765)
Q Consensus 399 ~~lvl~hR 406 (765)
...+..-|
T Consensus 1003 leeiE~sr 1010 (1164)
T PTZ00112 1003 TNQLFDSP 1010 (1164)
T ss_pred HHHHHhhh
Confidence 98765544
No 166
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.24 E-value=4.2e-11 Score=130.69 Aligned_cols=155 Identities=16% Similarity=0.213 Sum_probs=100.4
Q ss_pred cCCeEeccccccCC------------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeec--C-CCCCcchHHHhh
Q 004256 224 HRGVLYIDEINLLD------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYN--P-EEGVVREHLLDR 288 (765)
Q Consensus 224 ~~GiL~lDEi~~L~------------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N--~-~eg~l~~~L~dR 288 (765)
+.||+|||||+.+. ..+|..||..++.-.+.+. .|. .-..++.+||+-- . .+..|-|+|.-|
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k-~~~--i~T~~ILFI~~GAF~~~kp~DlIPEl~GR 325 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTK-YGM--VKTDHILFIASGAFHVSKPSDLIPELQGR 325 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeec-cee--EECCceeEEecCCcCCCChhhccHHHhCc
Confidence 89999999999884 3599999999987765542 221 1112455555422 1 234578999999
Q ss_pred hhcceeecCCCCHhhHHHHHHHH-HHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhC----
Q 004256 289 IAINLSADLPMTFEDRVAAVGIA-TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG---- 363 (765)
Q Consensus 289 f~~~v~i~~p~~~e~r~dI~~l~-~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~---- 363 (765)
|.+++.+. |.+.+....|+.-- .....++. .++... --++.+++++++.|++.+...
T Consensus 326 ~Pi~v~L~-~L~~~dL~~ILteP~nsLikQy~---------------~Lf~~e--gv~L~Ftd~Al~~IA~~A~~~N~~~ 387 (443)
T PRK05201 326 FPIRVELD-ALTEEDFVRILTEPKASLIKQYQ---------------ALLATE--GVTLEFTDDAIRRIAEIAYQVNEKT 387 (443)
T ss_pred cceEEECC-CCCHHHHHHHhcCChhHHHHHHH---------------HHHhhc--CcEEEEcHHHHHHHHHHHHHhcccc
Confidence 99998887 67777766665310 01111111 111111 123689999999999999873
Q ss_pred -CCCCCChHHHHHHHHHHHHHHcCCC------CCCHHHHHHHHH
Q 004256 364 -GCQGHRAELYAARVAKCLAALEGRE------KVNVDDLKKAVE 400 (765)
Q Consensus 364 -g~~s~Ra~i~llr~A~a~A~l~gr~------~Vt~edv~~A~~ 400 (765)
++ |.|++..++.....-+.++.-. .|+.+-|...+.
T Consensus 388 ~~i-GAR~LrtI~E~~L~d~~Fe~p~~~~~~v~I~~~~V~~~l~ 430 (443)
T PRK05201 388 ENI-GARRLHTVMEKLLEDISFEAPDMSGETVTIDAAYVDEKLG 430 (443)
T ss_pred ccc-chhhHHHHHHHHHHHHhccCCCCCCCEEEECHHHHHHHHH
Confidence 55 8999999998887766655422 355665655443
No 167
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=99.23 E-value=1.5e-10 Score=120.58 Aligned_cols=134 Identities=17% Similarity=0.192 Sum_probs=98.2
Q ss_pred cCCceEEEEEeCCCCCCc-----hhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCC--
Q 004256 559 KAGALVIFVVDASGSMAL-----NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLP-- 631 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~-----~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~-- 631 (765)
+.+..|+|+||.|.||.. .+++ +|..+..++. ....+++||+.|+++ +.++.|+|.+... +..+..+.
T Consensus 58 kr~~qIvlaID~S~SM~~~~~~~~ale-ak~lIs~al~--~Le~g~vgVv~Fg~~-~~~v~Plt~d~~~-~a~~~~l~~~ 132 (266)
T cd01460 58 KRDYQILIAIDDSKSMSENNSKKLALE-SLCLVSKALT--LLEVGQLGVCSFGED-VQILHPFDEQFSS-QSGPRILNQF 132 (266)
T ss_pred ccCceEEEEEecchhcccccccccHHH-HHHHHHHHHH--hCcCCcEEEEEeCCC-ceEeCCCCCCchh-hHHHHHhCcc
Confidence 357899999999999963 4555 6776666665 457799999999999 9999999987776 55554443
Q ss_pred --CCCCChhHHHHHHHHHHHHhhhccCCCC--ceEEEEEeCCC--CCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHH
Q 004256 632 --CGGGSPLAHGLSMAVRVGLNAEKSGDVG--RIMIVAITDGR--ANISLKRSTDPEATASDAPRPSSQELKDEILEVAG 705 (765)
Q Consensus 632 --~gG~T~l~~aL~~A~~~l~~~~~~~~~~--~~~vvliTDG~--~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 705 (765)
..++|++..+|..+.+.+.......... ..++||+|||. .+.+ ....+++
T Consensus 133 ~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~------------------------~~~~~~r 188 (266)
T cd01460 133 TFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEG------------------------AQKVRLR 188 (266)
T ss_pred cCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCcc------------------------HHHHHHH
Confidence 3479999999999999987653211111 25899999999 3321 2234477
Q ss_pred HHHhCCCEEEEEeCCC
Q 004256 706 KIYKAGMSLLVIDTEN 721 (765)
Q Consensus 706 ~~~~~gi~~~vig~~~ 721 (765)
.+.+.||.+++|+..+
T Consensus 189 ~a~e~~i~l~~I~ld~ 204 (266)
T cd01460 189 EAREQNVFVVFIIIDN 204 (266)
T ss_pred HHHHcCCeEEEEEEcC
Confidence 7888899888776543
No 168
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.2e-11 Score=138.00 Aligned_cols=216 Identities=22% Similarity=0.226 Sum_probs=142.3
Q ss_pred CCCCCCceeechHHHHHHHHhhh-------------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALLLGAI-------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~~-------------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
....|.++.|.+.++..+.-+.. -....+|||+||||||||++|++++..+
T Consensus 237 ~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---------------- 300 (494)
T COG0464 237 EDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---------------- 300 (494)
T ss_pred CCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC----------------
Confidence 45678889998887776621110 1234579999999999999999999865
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEecccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi 233 (765)
+.+|+.+.....-+.++|.. ++.+ .-++..| ...|||||||
T Consensus 301 --------------------------~~~fi~v~~~~l~sk~vGes--ek~i--------r~~F~~A~~~~p~iiFiDEi 344 (494)
T COG0464 301 --------------------------RSRFISVKGSELLSKWVGES--EKNI--------RELFEKARKLAPSIIFIDEI 344 (494)
T ss_pred --------------------------CCeEEEeeCHHHhccccchH--HHHH--------HHHHHHHHcCCCcEEEEEch
Confidence 45677765554445556631 1111 1223333 3679999999
Q ss_pred ccCC-----------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCC
Q 004256 234 NLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMT 300 (765)
Q Consensus 234 ~~L~-----------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~ 300 (765)
+.+- ..+++.||..|+.-. + -.++.+|++|| .+..++++++. ||+..+.+. +|+
T Consensus 345 Ds~~~~r~~~~~~~~~r~~~~lL~~~d~~e----~-------~~~v~vi~aTN-~p~~ld~a~lR~gRfd~~i~v~-~pd 411 (494)
T COG0464 345 DSLASGRGPSEDGSGRRVVGQLLTELDGIE----K-------AEGVLVIAATN-RPDDLDPALLRPGRFDRLIYVP-LPD 411 (494)
T ss_pred hhhhccCCCCCchHHHHHHHHHHHHhcCCC----c-------cCceEEEecCC-CccccCHhhcccCccceEeecC-CCC
Confidence 9872 257888888886322 1 12478999999 66677888988 999998887 578
Q ss_pred HhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Q 004256 301 FEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKC 380 (765)
Q Consensus 301 ~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a 380 (765)
.+.|.+|..........+ -..+-.++.+++....+ +......+++-|.-
T Consensus 412 ~~~r~~i~~~~~~~~~~~----------------------------~~~~~~~~~l~~~t~~~---sgadi~~i~~ea~~ 460 (494)
T COG0464 412 LEERLEIFKIHLRDKKPP----------------------------LAEDVDLEELAEITEGY---SGADIAALVREAAL 460 (494)
T ss_pred HHHHHHHHHHHhcccCCc----------------------------chhhhhHHHHHHHhcCC---CHHHHHHHHHHHHH
Confidence 888888876432210000 11122233444432222 44556677788888
Q ss_pred HHHHcC-CCCCCHHHHHHHHHH
Q 004256 381 LAALEG-REKVNVDDLKKAVEL 401 (765)
Q Consensus 381 ~A~l~g-r~~Vt~edv~~A~~l 401 (765)
.|..+. ...|+.+|+..|++-
T Consensus 461 ~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 461 EALREARRREVTLDDFLDALKK 482 (494)
T ss_pred HHHHHhccCCccHHHHHHHHHh
Confidence 887777 789999999999986
No 169
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=1.4e-10 Score=135.11 Aligned_cols=227 Identities=20% Similarity=0.206 Sum_probs=134.8
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccc---cc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE---DG 164 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~~ 164 (765)
+++..|++||||+.+++.|.-........| +||+||+|||||++|+.+++.+ +|........| ..
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l-----------~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKAL-----------NCEQGLTAEPCNVCPP 78 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh-----------cCCCCCCCCCCCccHH
Confidence 567789999999999998854433333444 6999999999999999999876 34322122233 34
Q ss_pred ccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHH
Q 004256 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (765)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~L 244 (765)
|..-... ....++.+.... -.|.-++ +.+... ....| ..+...|++|||++.|+.+.++.|
T Consensus 79 c~~i~~g----------~~~d~~eid~~s----~~~v~~i-r~l~~~-~~~~p---~~~~~KVvIIdev~~Lt~~a~naL 139 (576)
T PRK14965 79 CVEITEG----------RSVDVFEIDGAS----NTGVDDI-RELREN-VKYLP---SRSRYKIFIIDEVHMLSTNAFNAL 139 (576)
T ss_pred HHHHhcC----------CCCCeeeeeccC----ccCHHHH-HHHHHH-HHhcc---ccCCceEEEEEChhhCCHHHHHHH
Confidence 4332111 112233332110 0010000 011000 01112 124567999999999999999999
Q ss_pred HHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcc
Q 004256 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (765)
Q Consensus 245 l~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~ 324 (765)
+..|++- |..+++|.++| +...+.+.+.+|+..+ ++. +...+ +|......
T Consensus 140 Lk~LEep-------------p~~~~fIl~t~-~~~kl~~tI~SRc~~~-~f~-~l~~~---~i~~~L~~----------- 189 (576)
T PRK14965 140 LKTLEEP-------------PPHVKFIFATT-EPHKVPITILSRCQRF-DFR-RIPLQ---KIVDRLRY----------- 189 (576)
T ss_pred HHHHHcC-------------CCCeEEEEEeC-ChhhhhHHHHHhhhhh-hcC-CCCHH---HHHHHHHH-----------
Confidence 9999973 23456666665 4467888899998654 555 33332 33332211
Q ss_pred ccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 004256 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (765)
Q Consensus 325 ~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A 398 (765)
++.. .++.++++++..++..+ +. +.|..+.++.-+.+ .. | ..|+.+||...
T Consensus 190 -----------i~~~----egi~i~~~al~~la~~a---~G-~lr~al~~Ldqlia--y~-g-~~It~edV~~l 240 (576)
T PRK14965 190 -----------IADQ----EGISISDAALALVARKG---DG-SMRDSLSTLDQVLA--FC-G-DAVGDDDVAEL 240 (576)
T ss_pred -----------HHHH----hCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHH--hc-c-CCCCHHHHHHH
Confidence 1111 25788999888886554 33 67888888764433 22 2 35888887654
No 170
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.22 E-value=9.2e-11 Score=141.54 Aligned_cols=208 Identities=21% Similarity=0.278 Sum_probs=122.2
Q ss_pred ceeechHHHHHHHH-hhh---c--CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccc
Q 004256 96 AVVGQDAIKTALLL-GAI---D--REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (765)
Q Consensus 96 ~ivG~~~~~~aL~l-~~~---~--~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (765)
+++|++.++..+.- .++ . ....++||+||||||||++|++|+..+..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~--------------------------- 373 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR--------------------------- 373 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC---------------------------
Confidence 47899999888732 111 1 12345999999999999999999998742
Q ss_pred cccccCcccccccCCCeEeCCCCC--cccceeeecccccccccCCCcccCCce----e--eccCCeEeccccccCCHHH-
Q 004256 170 EYDTAGNLKTQIARSPFVQIPLGV--TEDRLIGSVDVEESVKTGTTVFQPGLL----A--EAHRGVLYIDEINLLDEGI- 240 (765)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~l~~~~--~e~~L~G~~d~e~~~~~g~~~~~~Gll----~--~A~~GiL~lDEi~~L~~~~- 240 (765)
+|+.+..+- ...++.|+. + .+-|. .+|.+ . ...+.++|||||+.+....
T Consensus 374 ---------------~~~~i~~~~~~~~~~i~g~~---~-~~~g~---~~g~i~~~l~~~~~~~~villDEidk~~~~~~ 431 (775)
T TIGR00763 374 ---------------KFVRFSLGGVRDEAEIRGHR---R-TYVGA---MPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFR 431 (775)
T ss_pred ---------------CeEEEeCCCcccHHHHcCCC---C-ceeCC---CCchHHHHHHHhCcCCCEEEEechhhcCCccC
Confidence 333332211 112222211 0 00011 11111 1 1245699999999997643
Q ss_pred ---HHHHHHHHHcCceEEEeC---CeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHH
Q 004256 241 ---SNLLLNVLTEGVNIVERE---GISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (765)
Q Consensus 241 ---q~~Ll~~l~~~~~~v~r~---G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~ 314 (765)
.+.|+++|+...+....+ +.... -.++++|+|+|. ...++++|++||.+ +.+. +++.+++..|+.....
T Consensus 432 ~~~~~aLl~~ld~~~~~~f~d~~~~~~~d-~s~v~~I~TtN~-~~~i~~~L~~R~~v-i~~~-~~~~~e~~~I~~~~l~- 506 (775)
T TIGR00763 432 GDPASALLEVLDPEQNNAFSDHYLDVPFD-LSKVIFIATANS-IDTIPRPLLDRMEV-IELS-GYTEEEKLEIAKKYLI- 506 (775)
T ss_pred CCHHHHHHHhcCHHhcCccccccCCceec-cCCEEEEEecCC-chhCCHHHhCCeeE-EecC-CCCHHHHHHHHHHHHH-
Confidence 478999997532211111 11111 136788999995 56789999999975 4666 5677888888753221
Q ss_pred HHhhHHHhccccccCcHHHHHHHHHhcc-cCCccCCHHHHHHHHHHH-HhCCCCCCChHHHHHHHHH
Q 004256 315 QERSNEVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVMEA-LRGGCQGHRAELYAARVAK 379 (765)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~il~a~~~-~~nv~i~~~~l~~l~~~a-~~~g~~s~Ra~i~llr~A~ 379 (765)
.+.+..+.. ...+.++++++.+|++.+ ... |.|.+...+....
T Consensus 507 -------------------~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~---g~R~l~r~i~~~~ 551 (775)
T TIGR00763 507 -------------------PKALEDHGLKPDELKITDEALLLLIKYYTREA---GVRNLERQIEKIC 551 (775)
T ss_pred -------------------HHHHHHcCCCcceEEECHHHHHHHHHhcChhc---CChHHHHHHHHHH
Confidence 011222222 235789999999998743 334 4577766554433
No 171
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=99.21 E-value=2.1e-10 Score=117.96 Aligned_cols=160 Identities=21% Similarity=0.249 Sum_probs=105.4
Q ss_pred CCccchhHHHHhcCCchhhhhhcccccCceeEEeccchhhhhhhccCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhh
Q 004256 514 IKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKLLAES 593 (765)
Q Consensus 514 ~~~id~~~Tlraaap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~ 593 (765)
..+|||.+|++++.. . .|. +.++..+.+.++.+..+++|+|+||||.+- ++ .+..++..+
T Consensus 25 ~~~lD~rrTir~~~r-----~-----~g~-----~~~l~~r~~r~~~~~~lvvl~DvSGSM~~~----s~-~~l~~~~~l 84 (222)
T PF05762_consen 25 RGRLDLRRTIRASLR-----T-----GGE-----PLRLVRRRRRPRKPRRLVVLCDVSGSMAGY----SE-FMLAFLYAL 84 (222)
T ss_pred CCCCCHHHHHHHHHh-----c-----CCC-----cceeeccccccCCCccEEEEEeCCCChHHH----HH-HHHHHHHHH
Confidence 357999999998862 1 111 344555554455567899999999999741 11 344444444
Q ss_pred cCCCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhh--cCCCCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCC
Q 004256 594 YTCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLE--RLPCGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDG 669 (765)
Q Consensus 594 ~~~~d~v~lv~F~~~~a~~~~p~t~--~~~~~~~~l~--~l~~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG 669 (765)
.....++.++.|+.. ...+.+.-. +.......+. ....+|||+++.+|..+.+......- .+..|||+|||
T Consensus 85 ~~~~~~~~~f~F~~~-l~~vT~~l~~~~~~~~l~~~~~~~~~~~GgTdi~~aL~~~~~~~~~~~~----~~t~vvIiSDg 159 (222)
T PF05762_consen 85 QRQFRRVRVFVFSTR-LTEVTPLLRRRDPEEALARLSALVQSFGGGTDIGQALREFLRQYARPDL----RRTTVVIISDG 159 (222)
T ss_pred HHhCCCEEEEEEeee-hhhhhhhhccCCHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhhcccc----cCcEEEEEecc
Confidence 455559999999987 333322222 4444433333 22378999999999999888653211 24479999999
Q ss_pred CCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEEEeCC
Q 004256 670 RANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLVIDTE 720 (765)
Q Consensus 670 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vig~~ 720 (765)
..|.. .+......++++..+..++.+...
T Consensus 160 ~~~~~----------------------~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 160 WDTND----------------------PEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred cccCC----------------------hHHHHHHHHHHHHhCCEEEEECCc
Confidence 64421 145677778889999999999876
No 172
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=4.9e-11 Score=135.54 Aligned_cols=218 Identities=22% Similarity=0.279 Sum_probs=147.8
Q ss_pred CCCCCCceeechHHHHHHH-Hhh--hcC---------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALL-LGA--IDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~-l~~--~~~---------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~ 157 (765)
....|.++.|.+++|..|. +.- -+| -..+||++||||||||+|||+++..
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE------------------ 206 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE------------------ 206 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcc------------------
Confidence 3467999999999999882 111 112 2467999999999999999999865
Q ss_pred CCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeecc---CCeEeccccc
Q 004256 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEIN 234 (765)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~---~GiL~lDEi~ 234 (765)
.+.||..+.-+...+.++|- |+... .-++.+|. .+|+|||||+
T Consensus 207 ------------------------A~VPFf~iSGS~FVemfVGv---------GAsRV-RdLF~qAkk~aP~IIFIDEiD 252 (596)
T COG0465 207 ------------------------AGVPFFSISGSDFVEMFVGV---------GASRV-RDLFEQAKKNAPCIIFIDEID 252 (596)
T ss_pred ------------------------cCCCceeccchhhhhhhcCC---------CcHHH-HHHHHHhhccCCCeEEEehhh
Confidence 35688877776666666663 33221 22444443 4699999999
Q ss_pred cCCH--------------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCC
Q 004256 235 LLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (765)
Q Consensus 235 ~L~~--------------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p 298 (765)
.... .+.+.||.-|+. .. -...+++|++|| .+.-++++|++ ||+-.|.++.|
T Consensus 253 AvGr~Rg~g~GggnderEQTLNQlLvEmDG---------F~--~~~gviviaaTN-RpdVlD~ALlRpgRFDRqI~V~~P 320 (596)
T COG0465 253 AVGRQRGAGLGGGNDEREQTLNQLLVEMDG---------FG--GNEGVIVIAATN-RPDVLDPALLRPGRFDRQILVELP 320 (596)
T ss_pred hcccccCCCCCCCchHHHHHHHHHHhhhcc---------CC--CCCceEEEecCC-CcccchHhhcCCCCcceeeecCCc
Confidence 8743 255666665543 21 112478999999 66677788886 99998888864
Q ss_pred CCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 004256 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (765)
Q Consensus 299 ~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A 378 (765)
+...|+.|... | ++.-+.+..++-.. +++..-..+.--+.+++-.|
T Consensus 321 -Di~gRe~Ilkv--H-------------------------~~~~~l~~~Vdl~~------iAr~tpGfsGAdL~nl~NEA 366 (596)
T COG0465 321 -DIKGREQILKV--H-------------------------AKNKPLAEDVDLKK------IARGTPGFSGADLANLLNEA 366 (596)
T ss_pred -chhhHHHHHHH--H-------------------------hhcCCCCCcCCHHH------HhhhCCCcccchHhhhHHHH
Confidence 66667777652 1 11111112222111 23333333556788899999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhcCC
Q 004256 379 KCLAALEGREKVNVDDLKKAVELVILP 405 (765)
Q Consensus 379 ~a~A~l~gr~~Vt~edv~~A~~lvl~h 405 (765)
..+|+-.++..|+..|+.+|...++..
T Consensus 367 al~aar~n~~~i~~~~i~ea~drv~~G 393 (596)
T COG0465 367 ALLAARRNKKEITMRDIEEAIDRVIAG 393 (596)
T ss_pred HHHHHHhcCeeEeccchHHHHHHHhcC
Confidence 999999999999999999999998864
No 173
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.21 E-value=2.4e-10 Score=138.35 Aligned_cols=214 Identities=21% Similarity=0.255 Sum_probs=134.7
Q ss_pred CceeechHHHHHHH--Hhh----h-cCC--CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccc
Q 004256 95 AAVVGQDAIKTALL--LGA----I-DRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (765)
Q Consensus 95 ~~ivG~~~~~~aL~--l~~----~-~~~--~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (765)
..|+||+.++.++. +.. + .|. .+.+||.||+|||||.+|++|+..+-.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~----------------------- 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG----------------------- 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC-----------------------
Confidence 35999999888872 211 1 121 123899999999999999999998642
Q ss_pred cccccccccCcccccccCCCeEeCCCC-----CcccceeeecccccccccCCCcccCCceee----ccCCeEeccccccC
Q 004256 166 DEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLAE----AHRGVLYIDEINLL 236 (765)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~l~~~-----~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~----A~~GiL~lDEi~~L 236 (765)
....|+.++++ -+..+|+|.-- + +-|. .+.|.|.. ...+||+||||+.+
T Consensus 623 ----------------~~~~~~~~dmse~~~~~~~~~l~g~~~---g-yvg~--~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 623 ----------------GEQNLITINMSEFQEAHTVSRLKGSPP---G-YVGY--GEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred ----------------CCcceEEEeHHHhhhhhhhccccCCCC---C-cccc--cccchHHHHHHhCCCcEEEEechhhc
Confidence 11233333322 22234544210 0 0010 11233322 35679999999999
Q ss_pred CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC----------------------------CCcchHHHhh
Q 004256 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----------------------------GVVREHLLDR 288 (765)
Q Consensus 237 ~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e----------------------------g~l~~~L~dR 288 (765)
++++++.|++++++|.++- ..|..... .+.++|.|||... ..|+|+|+.|
T Consensus 681 ~~~v~~~Llq~ld~g~l~d-~~Gr~vd~-~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnR 758 (852)
T TIGR03345 681 HPDVLELFYQVFDKGVMED-GEGREIDF-KNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGR 758 (852)
T ss_pred CHHHHHHHHHHhhcceeec-CCCcEEec-cccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcc
Confidence 9999999999999998532 23433333 2678999999510 1378999999
Q ss_pred hhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCC
Q 004256 289 IAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGH 368 (765)
Q Consensus 289 f~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~ 368 (765)
+.+ |.+. |.+.+....|+.+...-+ ..++... ..-.+.++++++++|++.+..... +.
T Consensus 759 i~i-I~F~-pLs~e~l~~Iv~~~L~~l-----------------~~rl~~~--~gi~l~i~d~a~~~La~~g~~~~~-GA 816 (852)
T TIGR03345 759 MTV-IPYL-PLDDDVLAAIVRLKLDRI-----------------ARRLKEN--HGAELVYSEALVEHIVARCTEVES-GA 816 (852)
T ss_pred eeE-EEeC-CCCHHHHHHHHHHHHHHH-----------------HHHHHHh--cCceEEECHHHHHHHHHHcCCCCC-Ch
Confidence 984 4455 788888878876543211 1111111 112578999999999988766433 67
Q ss_pred ChHHHHHHH
Q 004256 369 RAELYAARV 377 (765)
Q Consensus 369 Ra~i~llr~ 377 (765)
|.+..+++.
T Consensus 817 R~L~r~Ie~ 825 (852)
T TIGR03345 817 RNIDAILNQ 825 (852)
T ss_pred HHHHHHHHH
Confidence 888877654
No 174
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.21 E-value=9.1e-11 Score=132.83 Aligned_cols=171 Identities=16% Similarity=0.199 Sum_probs=100.1
Q ss_pred CCCCCCceeechHHHHHHHHhhh-------------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALLLGAI-------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~~-------------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
+...|++|.|.+..++.+.-... -+...+|||+||||||||++|++++..+...-.. +.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~-----~~--- 248 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGA-----ET--- 248 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccc-----cc---
Confidence 44678999999998877732211 1124679999999999999999999987530000 00
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccc---cccCCCcccCCceeeccCCeEecccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEES---VKTGTTVFQPGLLAEAHRGVLYIDEI 233 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~---~~~g~~~~~~Gll~~A~~GiL~lDEi 233 (765)
.....|+.+........++|.. ++. +|.... .........|||||||
T Consensus 249 ------------------------~~~~~fl~v~~~eLl~kyvGet--e~~ir~iF~~Ar----~~a~~g~p~IIfIDEi 298 (512)
T TIGR03689 249 ------------------------GDKSYFLNIKGPELLNKYVGET--ERQIRLIFQRAR----EKASDGRPVIVFFDEM 298 (512)
T ss_pred ------------------------CCceeEEeccchhhcccccchH--HHHHHHHHHHHH----HHhhcCCCceEEEehh
Confidence 0012232222111111222210 000 000000 0000112459999999
Q ss_pred ccCCH------------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCC
Q 004256 234 NLLDE------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (765)
Q Consensus 234 ~~L~~------------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~ 299 (765)
+.+-. .+.+.||..|+. ++. ..++.+|+||| .+..++++|+. ||+..+.+. +|
T Consensus 299 D~L~~~R~~~~s~d~e~~il~~LL~~LDg----l~~-------~~~ViVI~ATN-~~d~LDpALlRpGRfD~~I~~~-~P 365 (512)
T TIGR03689 299 DSIFRTRGSGVSSDVETTVVPQLLSELDG----VES-------LDNVIVIGASN-REDMIDPAILRPGRLDVKIRIE-RP 365 (512)
T ss_pred hhhhcccCCCccchHHHHHHHHHHHHhcc----ccc-------CCceEEEeccC-ChhhCCHhhcCccccceEEEeC-CC
Confidence 98721 234566666653 111 12578999999 45678999998 999998888 56
Q ss_pred CHhhHHHHHHHH
Q 004256 300 TFEDRVAAVGIA 311 (765)
Q Consensus 300 ~~e~r~dI~~l~ 311 (765)
+.+.+.+|+...
T Consensus 366 d~e~r~~Il~~~ 377 (512)
T TIGR03689 366 DAEAAADIFSKY 377 (512)
T ss_pred CHHHHHHHHHHH
Confidence 888888888643
No 175
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=1.6e-10 Score=129.15 Aligned_cols=232 Identities=16% Similarity=0.154 Sum_probs=137.9
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCC-----------C
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP-----------T 156 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~-----------~ 156 (765)
.+|..|++|+||+.+++.|.-........| +||+||+|+|||++|+++++.+. |.+ .
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-----------c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-----------CQRMIDDADYLQEVT 78 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-----------CCCCcCcccccccCC
Confidence 567789999999999998854444334444 99999999999999999998763 321 0
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccC
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL 236 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L 236 (765)
.|-.-|..|...... ....|+.+..... .|--++ +.+. ......| ..+...++||||++.|
T Consensus 79 ~~c~~c~~c~~~~~~----------~~~n~~~~~~~~~----~~id~I-r~l~-~~~~~~p---~~~~~kvvIIdea~~l 139 (397)
T PRK14955 79 EPCGECESCRDFDAG----------TSLNISEFDAASN----NSVDDI-RLLR-ENVRYGP---QKGRYRVYIIDEVHML 139 (397)
T ss_pred CCCCCCHHHHHHhcC----------CCCCeEeeccccc----CCHHHH-HHHH-HHHhhch---hcCCeEEEEEeChhhC
Confidence 111123344332211 1223443322110 110000 0000 0000111 1235569999999999
Q ss_pred CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHH
Q 004256 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (765)
Q Consensus 237 ~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~ 316 (765)
+.+.++.|+..|++-. ...++|.+++ +...+.+.|..|+.++ ++. |...+ ++.......
T Consensus 140 ~~~~~~~LLk~LEep~-------------~~t~~Il~t~-~~~kl~~tl~sR~~~v-~f~-~l~~~---ei~~~l~~~-- 198 (397)
T PRK14955 140 SIAAFNAFLKTLEEPP-------------PHAIFIFATT-ELHKIPATIASRCQRF-NFK-RIPLE---EIQQQLQGI-- 198 (397)
T ss_pred CHHHHHHHHHHHhcCC-------------CCeEEEEEeC-ChHHhHHHHHHHHHHh-hcC-CCCHH---HHHHHHHHH--
Confidence 9999999999998632 2345555554 3456777888888654 554 33333 333221111
Q ss_pred hhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH-cCCCCCCHHHH
Q 004256 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL-EGREKVNVDDL 395 (765)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l-~gr~~Vt~edv 395 (765)
+.. .++.++++++++|+..+ +. +.|..+..+.....++.- .+...|+.++|
T Consensus 199 --------------------~~~----~g~~i~~~al~~l~~~s---~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v 250 (397)
T PRK14955 199 --------------------CEA----EGISVDADALQLIGRKA---QG-SMRDAQSILDQVIAFSVESEGEGSIRYDKV 250 (397)
T ss_pred --------------------HHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHhccccCCCCccCHHHH
Confidence 111 25789999999997765 33 578888887776655532 23458999999
Q ss_pred HHHH
Q 004256 396 KKAV 399 (765)
Q Consensus 396 ~~A~ 399 (765)
.+++
T Consensus 251 ~~~v 254 (397)
T PRK14955 251 AELL 254 (397)
T ss_pred HHHH
Confidence 8766
No 176
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=1.3e-10 Score=132.56 Aligned_cols=229 Identities=19% Similarity=0.182 Sum_probs=137.7
Q ss_pred cCCCCCCCceeechHHHHHHHHhhhcCCCCcE-EEECCCCcHHHHHHHHHHhhCCCcchhcccccCCC-CCCCCc-cccc
Q 004256 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGGI-AISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD-PTCPDE-WEDG 164 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~V-Li~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~-~~~~~~-~~~~ 164 (765)
+++|..|++|+||+.++..|.-........|. ||+||+||||||+|+++++.+. |. +....| .|..
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~-----------c~~~~~~~cg~C~s 75 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN-----------CSGEDPKPCGECES 75 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh-----------ccCCCCCCCCcChh
Confidence 35677899999999999888544444445555 9999999999999999998763 32 111011 2333
Q ss_pred ccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHH
Q 004256 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (765)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~L 244 (765)
|...... ....++.+.... . .| ++.-+.+... ....| ......+++|||++.++...++.|
T Consensus 76 c~~i~~~----------~h~dv~el~~~~--~--~~-vd~iR~l~~~-~~~~p---~~~~~kVVIIDEad~ls~~a~naL 136 (504)
T PRK14963 76 CLAVRRG----------AHPDVLEIDAAS--N--NS-VEDVRDLREK-VLLAP---LRGGRKVYILDEAHMMSKSAFNAL 136 (504)
T ss_pred hHHHhcC----------CCCceEEecccc--c--CC-HHHHHHHHHH-Hhhcc---ccCCCeEEEEECccccCHHHHHHH
Confidence 3322110 122333343321 0 01 1111111100 00111 123456999999999999999999
Q ss_pred HHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcc
Q 004256 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (765)
Q Consensus 245 l~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~ 324 (765)
+..|++.. ..+++|.++| ....+.+.+..|+..+ .+. |+..++..+.+. .
T Consensus 137 Lk~LEep~-------------~~t~~Il~t~-~~~kl~~~I~SRc~~~-~f~-~ls~~el~~~L~---~----------- 186 (504)
T PRK14963 137 LKTLEEPP-------------EHVIFILATT-EPEKMPPTILSRTQHF-RFR-RLTEEEIAGKLR---R----------- 186 (504)
T ss_pred HHHHHhCC-------------CCEEEEEEcC-ChhhCChHHhcceEEE-Eec-CCCHHHHHHHHH---H-----------
Confidence 99998742 2345555555 3456778888997653 665 444443222222 1
Q ss_pred ccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 325 ~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
++.. .++.++++++++|++.+. . +.|..++++..+.+. ...|+.++|.+++.
T Consensus 187 -----------i~~~----egi~i~~~Al~~ia~~s~---G-dlR~aln~Lekl~~~-----~~~It~~~V~~~l~ 238 (504)
T PRK14963 187 -----------LLEA----EGREAEPEALQLVARLAD---G-AMRDAESLLERLLAL-----GTPVTRKQVEEALG 238 (504)
T ss_pred -----------HHHH----cCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHHC
Confidence 1111 257889999999876652 2 578888888776431 24799999988764
No 177
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.20 E-value=3.8e-11 Score=141.59 Aligned_cols=215 Identities=20% Similarity=0.240 Sum_probs=134.9
Q ss_pred CCCCceeechHHHHHH-HHhhh-----------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCC
Q 004256 92 FPLAAVVGQDAIKTAL-LLGAI-----------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL-~l~~~-----------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~ 159 (765)
..|.++.|.+..+..+ .+... .....+|||+||+|||||+++++++..+.
T Consensus 149 ~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~------------------ 210 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK------------------ 210 (644)
T ss_pred CcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC------------------
Confidence 3467888988877766 11111 11245799999999999999999998653
Q ss_pred cccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEeccccccC
Q 004256 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINLL 236 (765)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~~L 236 (765)
.||+.+.+......++|. +.... .-++..+ ...|||||||+.+
T Consensus 211 ------------------------~~f~~is~~~~~~~~~g~---------~~~~~-~~~f~~a~~~~P~IifIDEiD~l 256 (644)
T PRK10733 211 ------------------------VPFFTISGSDFVEMFVGV---------GASRV-RDMFEQAKKAAPCIIFIDEIDAV 256 (644)
T ss_pred ------------------------CCEEEEehHHhHHhhhcc---------cHHHH-HHHHHHHHhcCCcEEEehhHhhh
Confidence 355554433222222221 00000 0112222 3469999999988
Q ss_pred CH--------------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCC
Q 004256 237 DE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMT 300 (765)
Q Consensus 237 ~~--------------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~ 300 (765)
.. .+.+.||..|+.-. ....+++|+||| ....++++|++ ||+..+.+.. |+
T Consensus 257 ~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~-----------~~~~vivIaaTN-~p~~lD~Al~RpgRfdr~i~v~~-Pd 323 (644)
T PRK10733 257 GRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----------GNEGIIVIAATN-RPDVLDPALLRPGRFDRQVVVGL-PD 323 (644)
T ss_pred hhccCCCCCCCchHHHHHHHHHHHhhhccc-----------CCCCeeEEEecC-ChhhcCHHHhCCcccceEEEcCC-CC
Confidence 32 24566666555311 123578999999 56678888886 9999988885 57
Q ss_pred HhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Q 004256 301 FEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKC 380 (765)
Q Consensus 301 ~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a 380 (765)
.+.|.+|+..... . .....++. +..+ +......+.+....+++.|..
T Consensus 324 ~~~R~~Il~~~~~---~----------------------~~l~~~~d-----~~~l---a~~t~G~sgadl~~l~~eAa~ 370 (644)
T PRK10733 324 VRGREQILKVHMR---R----------------------VPLAPDID-----AAII---ARGTPGFSGADLANLVNEAAL 370 (644)
T ss_pred HHHHHHHHHHHhh---c----------------------CCCCCcCC-----HHHH---HhhCCCCCHHHHHHHHHHHHH
Confidence 7778888653210 0 01111111 1223 333333367888899999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHhcC
Q 004256 381 LAALEGREKVNVDDLKKAVELVIL 404 (765)
Q Consensus 381 ~A~l~gr~~Vt~edv~~A~~lvl~ 404 (765)
.|.-.++..|+.+|+.+|...+..
T Consensus 371 ~a~r~~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 371 FAARGNKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred HHHHcCCCcccHHHHHHHHHHHhc
Confidence 999999999999999999886643
No 178
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.7e-11 Score=129.52 Aligned_cols=164 Identities=18% Similarity=0.309 Sum_probs=114.9
Q ss_pred CCCCceeechHHHHHHHHhhhcC--------------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCC
Q 004256 92 FPLAAVVGQDAIKTALLLGAIDR--------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~~~~--------------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~ 157 (765)
..|.+|-|.+.++.+|+...+-| ...+||++||||||||++|++++...
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea----------------- 151 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA----------------- 151 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc-----------------
Confidence 45899999999999884333222 13469999999999999999999874
Q ss_pred CCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeec-ccccccccCCCcccCCceeeccCCeEeccccccC
Q 004256 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSV-DVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL 236 (765)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~-d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L 236 (765)
.++|+.+..+...+.+||.- -+-+++|+=.... ...++|||||+.+
T Consensus 152 -------------------------ga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl--------~P~iIFIDEvds~ 198 (386)
T KOG0737|consen 152 -------------------------GANFINVSVSNLTSKWFGEAQKLVKAVFSLASKL--------QPSIIFIDEVDSF 198 (386)
T ss_pred -------------------------CCCcceeeccccchhhHHHHHHHHHHHHhhhhhc--------CcceeehhhHHHH
Confidence 56788888887777899841 1112233322222 3568999999876
Q ss_pred C-------HHHHHHH-HHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHH
Q 004256 237 D-------EGISNLL-LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (765)
Q Consensus 237 ~-------~~~q~~L-l~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~ 308 (765)
- -+.-..+ -++| ...+|.......++.|+|+|| .+..++++.+.||.-.+.|.+| ..+.|..|+
T Consensus 199 L~~R~s~dHEa~a~mK~eFM------~~WDGl~s~~~~rVlVlgATN-RP~DlDeAiiRR~p~rf~V~lP-~~~qR~kIL 270 (386)
T KOG0737|consen 199 LGQRRSTDHEATAMMKNEFM------ALWDGLSSKDSERVLVLGATN-RPFDLDEAIIRRLPRRFHVGLP-DAEQRRKIL 270 (386)
T ss_pred HhhcccchHHHHHHHHHHHH------HHhccccCCCCceEEEEeCCC-CCccHHHHHHHhCcceeeeCCC-chhhHHHHH
Confidence 2 1111111 1122 234566655666799999999 7888999999999998889976 677888898
Q ss_pred HHHHH
Q 004256 309 GIATQ 313 (765)
Q Consensus 309 ~l~~~ 313 (765)
..++.
T Consensus 271 kviLk 275 (386)
T KOG0737|consen 271 KVILK 275 (386)
T ss_pred HHHhc
Confidence 76543
No 179
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.19 E-value=3.7e-10 Score=129.30 Aligned_cols=228 Identities=16% Similarity=0.190 Sum_probs=135.4
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCC-CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccc---c
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED---G 164 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~-~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---~ 164 (765)
++|..|++|+||+.++..|.-+..... .+.+||+||+|||||++|+.+++.+. |.......+|. .
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-----------C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN-----------CLNPKDGDCCNSCSV 78 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCcccHH
Confidence 567789999999999988854433322 34599999999999999999999863 32211112333 3
Q ss_pred ccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHH
Q 004256 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (765)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~L 244 (765)
|+..... ....++.+.... ..| +|--+.+... ....| ..++..+++|||++.|....++.|
T Consensus 79 Cr~i~~~----------~h~DiieIdaas----~ig-Vd~IReIi~~-~~~~P---~~~~~KVIIIDEad~Lt~~A~NaL 139 (605)
T PRK05896 79 CESINTN----------QSVDIVELDAAS----NNG-VDEIRNIIDN-INYLP---TTFKYKVYIIDEAHMLSTSAWNAL 139 (605)
T ss_pred HHHHHcC----------CCCceEEecccc----ccC-HHHHHHHHHH-HHhch---hhCCcEEEEEechHhCCHHHHHHH
Confidence 3332110 112233332211 011 1100111000 00111 123567999999999999999999
Q ss_pred HHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcc
Q 004256 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (765)
Q Consensus 245 l~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~ 324 (765)
+..|++.. ..+++|.+++ ....+.+.+..|+..+ .+. |+..+.....+.
T Consensus 140 LKtLEEPp-------------~~tvfIL~Tt-~~~KLl~TI~SRcq~i-eF~-~Ls~~eL~~~L~--------------- 188 (605)
T PRK05896 140 LKTLEEPP-------------KHVVFIFATT-EFQKIPLTIISRCQRY-NFK-KLNNSELQELLK--------------- 188 (605)
T ss_pred HHHHHhCC-------------CcEEEEEECC-ChHhhhHHHHhhhhhc-ccC-CCCHHHHHHHHH---------------
Confidence 99999742 2345665555 3467778899998654 565 334443222221
Q ss_pred ccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004256 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 325 ~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
.++.. .++.+++++++.++.++ +. +.|.++.++.... .+.|. .|+.++|.+++
T Consensus 189 ----------~il~k----egi~Is~eal~~La~lS---~G-dlR~AlnlLekL~---~y~~~-~It~e~V~ell 241 (605)
T PRK05896 189 ----------SIAKK----EKIKIEDNAIDKIADLA---DG-SLRDGLSILDQLS---TFKNS-EIDIEDINKTF 241 (605)
T ss_pred ----------HHHHH----cCCCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHH---hhcCC-CCCHHHHHHHh
Confidence 11111 24778899988887665 22 5788888877643 33443 39999888754
No 180
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.19 E-value=3.2e-10 Score=123.10 Aligned_cols=213 Identities=17% Similarity=0.176 Sum_probs=129.9
Q ss_pred cCCCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
+++|..|++++|++.++..|.-..-.....+++|+||+|||||++++.++..+....
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~----------------------- 66 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED----------------------- 66 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-----------------------
Confidence 356777899999999998885444344456799999999999999999998763100
Q ss_pred cccccccCcccccccCCCeEeCCCCCcc-cceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLGVTE-DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~~~e-~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~ 246 (765)
....++.+...... ...+. ..+..-. .. ..+..+...+++|||++.|+...++.|+.
T Consensus 67 --------------~~~~~i~~~~~~~~~~~~~~-----~~i~~~~-~~--~~~~~~~~~vviiDe~~~l~~~~~~~L~~ 124 (319)
T PRK00440 67 --------------WRENFLELNASDERGIDVIR-----NKIKEFA-RT--APVGGAPFKIIFLDEADNLTSDAQQALRR 124 (319)
T ss_pred --------------cccceEEeccccccchHHHH-----HHHHHHH-hc--CCCCCCCceEEEEeCcccCCHHHHHHHHH
Confidence 01122322211000 00000 0000000 00 00111235699999999999999999999
Q ss_pred HHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcccc
Q 004256 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (765)
Q Consensus 247 ~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~ 326 (765)
.++... ....+|.++| ....+.+.+..|+.. +.+. |+..++..+++. .+
T Consensus 125 ~le~~~-------------~~~~lIl~~~-~~~~l~~~l~sr~~~-~~~~-~l~~~ei~~~l~---~~------------ 173 (319)
T PRK00440 125 TMEMYS-------------QNTRFILSCN-YSSKIIDPIQSRCAV-FRFS-PLKKEAVAERLR---YI------------ 173 (319)
T ss_pred HHhcCC-------------CCCeEEEEeC-CccccchhHHHHhhe-eeeC-CCCHHHHHHHHH---HH------------
Confidence 987532 1234555666 334566788899875 3565 444433222222 11
Q ss_pred ccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004256 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 327 ~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
+.. .++.++++++++++..+ +. +.|..+..++.+... ...||.++|..++
T Consensus 174 ----------~~~----~~~~i~~~al~~l~~~~---~g-d~r~~~~~l~~~~~~-----~~~it~~~v~~~~ 223 (319)
T PRK00440 174 ----------AEN----EGIEITDDALEAIYYVS---EG-DMRKAINALQAAAAT-----GKEVTEEAVYKIT 223 (319)
T ss_pred ----------HHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHc-----CCCCCHHHHHHHh
Confidence 111 15789999999987664 33 578888888764432 3589999998776
No 181
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.18 E-value=6.3e-11 Score=145.97 Aligned_cols=139 Identities=13% Similarity=0.115 Sum_probs=95.0
Q ss_pred CCeEeccccccCCHH-----HHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecC
Q 004256 225 RGVLYIDEINLLDEG-----ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~-----~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~ 297 (765)
..|+|||||+.+... ....|+..|+... .. .....++|||||| .+..++|+|+. ||+..|.|..
T Consensus 1733 PCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~---~~-----~s~~~VIVIAATN-RPD~LDPALLRPGRFDR~I~Ir~ 1803 (2281)
T CHL00206 1733 PCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDC---ER-----CSTRNILVIASTH-IPQKVDPALIAPNKLNTCIKIRR 1803 (2281)
T ss_pred CeEEEEEchhhcCCCccceehHHHHHHHhcccc---cc-----CCCCCEEEEEeCC-CcccCCHhHcCCCCCCeEEEeCC
Confidence 579999999999753 3677788776421 00 0123588999999 68889999997 9999999986
Q ss_pred CCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHH--HHHHHHHHHHhCCCCCCChHHHHH
Q 004256 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE--QLKYLVMEALRGGCQGHRAELYAA 375 (765)
Q Consensus 298 p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~--~l~~l~~~a~~~g~~s~Ra~i~ll 375 (765)
|...+ |.++.....+. + ++.+.+. -++.++ ...-+.+.+.+..++
T Consensus 1804 Pd~p~-R~kiL~ILl~t-------------------------k----g~~L~~~~vdl~~LA---~~T~GfSGADLanLv 1850 (2281)
T CHL00206 1804 LLIPQ-QRKHFFTLSYT-------------------------R----GFHLEKKMFHTNGFG---SITMGSNARDLVALT 1850 (2281)
T ss_pred CCchh-HHHHHHHHHhh-------------------------c----CCCCCcccccHHHHH---HhCCCCCHHHHHHHH
Confidence 65444 44443311110 0 1111111 123343 333333778899999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcCC
Q 004256 376 RVAKCLAALEGREKVNVDDLKKAVELVILP 405 (765)
Q Consensus 376 r~A~a~A~l~gr~~Vt~edv~~A~~lvl~h 405 (765)
..|..+|.-.++..|+.+|++.|+.-+.+.
T Consensus 1851 NEAaliAirq~ks~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1851 NEALSISITQKKSIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHHHHHhh
Confidence 999999999999999999999999887764
No 182
>PRK10997 yieM hypothetical protein; Provisional
Probab=99.18 E-value=5.3e-10 Score=125.05 Aligned_cols=135 Identities=21% Similarity=0.170 Sum_probs=104.4
Q ss_pred CCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCChhH
Q 004256 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLA 639 (765)
Q Consensus 560 ~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~gG~T~l~ 639 (765)
....+++|||+||||.|.+...||..+..++..+...+|++++|.|++......++.......+...|... .+|||++.
T Consensus 322 ~kGpiII~VDtSGSM~G~ke~~AkalAaAL~~iAl~q~dr~~li~Fs~~i~~~~l~~~~gl~~ll~fL~~~-f~GGTDl~ 400 (487)
T PRK10997 322 PRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYIMLFSTEVVTYELTGPDGLEQAIRFLSQS-FRGGTDLA 400 (487)
T ss_pred CCCcEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCceeeccCCccCHHHHHHHHHHh-cCCCCcHH
Confidence 45789999999999998888889988899988889999999999999983332345555778888888755 58999999
Q ss_pred HHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHh-CCCEEEEEe
Q 004256 640 HGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYK-AGMSLLVID 718 (765)
Q Consensus 640 ~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~gi~~~vig 718 (765)
.+|..+++.+.+...+ +..|||||||..... .+++.+..+.+++ .+.+++.+.
T Consensus 401 ~aL~~al~~l~~~~~r----~adIVVISDF~~~~~----------------------~eel~~~L~~Lk~~~~~rf~~l~ 454 (487)
T PRK10997 401 PCLRAIIEKMQGREWF----DADAVVISDFIAQRL----------------------PDELVAKVKELQRQHQHRFHAVA 454 (487)
T ss_pred HHHHHHHHHHcccccC----CceEEEECCCCCCCC----------------------hHHHHHHHHHHHHhcCcEEEEEE
Confidence 9999999887654322 347999999975310 1456666777766 777887777
Q ss_pred CCC
Q 004256 719 TEN 721 (765)
Q Consensus 719 ~~~ 721 (765)
++.
T Consensus 455 i~~ 457 (487)
T PRK10997 455 MSA 457 (487)
T ss_pred eCC
Confidence 764
No 183
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.18 E-value=1e-10 Score=131.50 Aligned_cols=229 Identities=20% Similarity=0.236 Sum_probs=146.5
Q ss_pred cCCCCCCCceeechHHHHHHHHhhhcCC-CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccc
Q 004256 88 GRQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l~~~~~~-~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (765)
++++-.|++++||+.+.+.|.-+..... .+.-|+.|+.|||||++||.+++.+ ||-......+|..|.
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~Akal-----------NC~~~~~~ePC~~C~ 77 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKAL-----------NCENGPTAEPCGKCI 77 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHh-----------cCCCCCCCCcchhhh
Confidence 3567789999999999999965544443 3558999999999999999999976 676543344555554
Q ss_pred c--cccccccCcccccccCCCeE---eCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHH
Q 004256 167 E--KAEYDTAGNLKTQIARSPFV---QIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (765)
Q Consensus 167 ~--~~~~~~~~~~~~~~~~~~~v---~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q 241 (765)
. .| ..+.++ .++... .. | +|--+.+.. ...+.| ..+.--|++|||++.|+.+..
T Consensus 78 ~Ck~I------------~~g~~~DviEiDaAS--n~--g-VddiR~i~e-~v~y~P---~~~ryKVyiIDEvHMLS~~af 136 (515)
T COG2812 78 SCKEI------------NEGSLIDVIEIDAAS--NT--G-VDDIREIIE-KVNYAP---SEGRYKVYIIDEVHMLSKQAF 136 (515)
T ss_pred hhHhh------------hcCCcccchhhhhhh--cc--C-hHHHHHHHH-HhccCC---ccccceEEEEecHHhhhHHHH
Confidence 3 12 112222 121110 00 0 110011110 011112 123445999999999999999
Q ss_pred HHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHH
Q 004256 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (765)
Q Consensus 242 ~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~ 321 (765)
+.||.-|++ .|..+.+|.+|. +...++.-.++|+-.+ .+.- .+. .+|..+...+..
T Consensus 137 NALLKTLEE-------------PP~hV~FIlATT-e~~Kip~TIlSRcq~f-~fkr-i~~---~~I~~~L~~i~~----- 192 (515)
T COG2812 137 NALLKTLEE-------------PPSHVKFILATT-EPQKIPNTILSRCQRF-DFKR-LDL---EEIAKHLAAILD----- 192 (515)
T ss_pred HHHhccccc-------------CccCeEEEEecC-CcCcCchhhhhccccc-cccC-CCH---HHHHHHHHHHHH-----
Confidence 999999987 356677777777 7888889999987654 4431 122 245544333321
Q ss_pred hccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 004256 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (765)
Q Consensus 322 ~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~l 401 (765)
-.++.+.++++..++..+ .+ |.|-.+.++..+..... ..|+.+++...+.+
T Consensus 193 ---------------------~E~I~~e~~aL~~ia~~a---~G-s~RDalslLDq~i~~~~----~~It~~~v~~~lG~ 243 (515)
T COG2812 193 ---------------------KEGINIEEDALSLIARAA---EG-SLRDALSLLDQAIAFGE----GEITLESVRDMLGL 243 (515)
T ss_pred ---------------------hcCCccCHHHHHHHHHHc---CC-ChhhHHHHHHHHHHccC----CcccHHHHHHHhCC
Confidence 126788999888886443 33 78999999988765543 57888888776653
No 184
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=2.6e-10 Score=133.30 Aligned_cols=231 Identities=18% Similarity=0.167 Sum_probs=131.7
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
+++..|++||||+.++..|..........+ +||+||+|+|||++|+.+++.+. |..+-....|-..|+.|..
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-------c~~~~~~~~~c~~c~~c~~ 82 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-------CTTNDPKGRPCGTCEMCRA 82 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-------CCCCCCCCCCCccCHHHHH
Confidence 567789999999999999854444334444 69999999999999999998863 2111000111123444443
Q ss_pred cccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~ 247 (765)
.... ....++.+... ...+.-++ +.+. ......|. .+...|+||||++.|+.+.++.||..
T Consensus 83 i~~~----------~~~d~~~i~~~----~~~~vd~i-r~ii-~~~~~~p~---~~~~kVvIIDEa~~L~~~a~naLLk~ 143 (585)
T PRK14950 83 IAEG----------SAVDVIEMDAA----SHTSVDDA-REII-ERVQFRPA---LARYKVYIIDEVHMLSTAAFNALLKT 143 (585)
T ss_pred HhcC----------CCCeEEEEecc----ccCCHHHH-HHHH-HHHhhCcc---cCCeEEEEEeChHhCCHHHHHHHHHH
Confidence 2210 11123333221 00110000 1000 00011111 24567999999999999999999999
Q ss_pred HHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccc
Q 004256 248 LTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (765)
Q Consensus 248 l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~ 327 (765)
|++-. ..++||.+++ +...+.+.|.+|+..+ .+. +...+. +.......
T Consensus 144 LEepp-------------~~tv~Il~t~-~~~kll~tI~SR~~~i-~f~-~l~~~e---l~~~L~~~------------- 191 (585)
T PRK14950 144 LEEPP-------------PHAIFILATT-EVHKVPATILSRCQRF-DFH-RHSVAD---MAAHLRKI------------- 191 (585)
T ss_pred HhcCC-------------CCeEEEEEeC-ChhhhhHHHHhcccee-eCC-CCCHHH---HHHHHHHH-------------
Confidence 98742 2345555554 3344667788887543 554 333332 22211111
Q ss_pred cCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 004256 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (765)
Q Consensus 328 ~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A 398 (765)
... .++.++++++++|+.++ +. +.|..+..+..... + +...|+.++|+++
T Consensus 192 ---------a~~----egl~i~~eal~~La~~s---~G-dlr~al~~LekL~~---y-~~~~It~e~V~~l 241 (585)
T PRK14950 192 ---------AAA----EGINLEPGALEAIARAA---TG-SMRDAENLLQQLAT---T-YGGEISLSQVQSL 241 (585)
T ss_pred ---------HHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHH---h-cCCCCCHHHHHHH
Confidence 111 25788999888887654 33 67888887775332 2 3457898888664
No 185
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=3.3e-10 Score=130.90 Aligned_cols=228 Identities=18% Similarity=0.217 Sum_probs=135.2
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcc---ccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW---EDG 164 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~~ 164 (765)
.+|-.|++|+||+.++..|.-........| +||+||+|+|||++|+++++.+. |.......+ |..
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~-----------c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN-----------CVNGPTPMPCGECSS 78 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-----------cccCCCCCCCccchH
Confidence 567789999999999998855444444444 89999999999999999999864 322111122 333
Q ss_pred ccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHH
Q 004256 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (765)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~L 244 (765)
|...... ....++.+.... . .+.-++ +.+... ....| ..+...+++|||++.|+...++.|
T Consensus 79 C~~i~~~----------~~~dv~~idgas-~---~~vddI-r~l~e~-~~~~p---~~~~~KVvIIDEa~~Ls~~a~naL 139 (563)
T PRK06647 79 CKSIDND----------NSLDVIEIDGAS-N---TSVQDV-RQIKEE-IMFPP---ASSRYRVYIIDEVHMLSNSAFNAL 139 (563)
T ss_pred HHHHHcC----------CCCCeEEecCcc-c---CCHHHH-HHHHHH-HHhch---hcCCCEEEEEEChhhcCHHHHHHH
Confidence 4331110 112233332110 0 000000 000000 00111 124556999999999999999999
Q ss_pred HHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcc
Q 004256 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (765)
Q Consensus 245 l~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~ 324 (765)
|..|++- |..+++|.+++ +...+.+.|..|+..+ ++. ++..+. +..+...
T Consensus 140 LK~LEep-------------p~~~vfI~~tt-e~~kL~~tI~SRc~~~-~f~-~l~~~e---l~~~L~~----------- 189 (563)
T PRK06647 140 LKTIEEP-------------PPYIVFIFATT-EVHKLPATIKSRCQHF-NFR-LLSLEK---IYNMLKK----------- 189 (563)
T ss_pred HHhhccC-------------CCCEEEEEecC-ChHHhHHHHHHhceEE-Eec-CCCHHH---HHHHHHH-----------
Confidence 9999863 33456666654 3456778999998754 565 333332 2221111
Q ss_pred ccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004256 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 325 ~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
++.. .++.++++++.+|+..+ +. +.|..+.++.-+..+ .+ ..|+.++|..++
T Consensus 190 -----------i~~~----egi~id~eAl~lLa~~s---~G-dlR~alslLdklis~---~~-~~It~e~V~~ll 241 (563)
T PRK06647 190 -----------VCLE----DQIKYEDEALKWIAYKS---TG-SVRDAYTLFDQVVSF---SD-SDITLEQIRSKM 241 (563)
T ss_pred -----------HHHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHhh---cC-CCCCHHHHHHHh
Confidence 1111 25788999998887653 33 578888888655433 23 468888887754
No 186
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=4.9e-10 Score=127.53 Aligned_cols=232 Identities=20% Similarity=0.207 Sum_probs=135.1
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
.+|..|.+|+||+.++..|.-+.-.....| +||+||+|+|||++|+.++..+. |.......+|..|..
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~-----------c~~~~~~~pc~~c~n 78 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN-----------CLNPQEGEPCGKCEN 78 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-----------CcCCCCCCCCCccHH
Confidence 466789999999999998854444334455 68899999999999999999864 321111123333321
Q ss_pred cccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~ 247 (765)
-...... ....++.+..... .| +|--+.+... ....| ..+...+++|||++.|+...++.|+..
T Consensus 79 c~~i~~g-------~~~d~~eidaas~----~g-vd~ir~I~~~-~~~~P---~~~~~KVvIIDEad~Lt~~a~naLLk~ 142 (486)
T PRK14953 79 CVEIDKG-------SFPDLIEIDAASN----RG-IDDIRALRDA-VSYTP---IKGKYKVYIIDEAHMLTKEAFNALLKT 142 (486)
T ss_pred HHHHhcC-------CCCcEEEEeCccC----CC-HHHHHHHHHH-HHhCc---ccCCeeEEEEEChhhcCHHHHHHHHHH
Confidence 1000000 1112332221100 01 0000001000 00111 123457999999999999999999999
Q ss_pred HHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccc
Q 004256 248 LTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (765)
Q Consensus 248 l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~ 327 (765)
|++-. ..+++|.+++ +...+.+.|..|+.. +.+. |+..++..+.+..
T Consensus 143 LEepp-------------~~~v~Il~tt-~~~kl~~tI~SRc~~-i~f~-~ls~~el~~~L~~----------------- 189 (486)
T PRK14953 143 LEEPP-------------PRTIFILCTT-EYDKIPPTILSRCQR-FIFS-KPTKEQIKEYLKR----------------- 189 (486)
T ss_pred HhcCC-------------CCeEEEEEEC-CHHHHHHHHHHhceE-EEcC-CCCHHHHHHHHHH-----------------
Confidence 98642 2345555444 334566788889864 3555 4444443333221
Q ss_pred cCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 328 ~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
++.. .++.+++++++.|++.+ +. +.|..+.++..+..+ +...|+.++|..++.
T Consensus 190 --------i~k~----egi~id~~al~~La~~s---~G-~lr~al~~Ldkl~~~----~~~~It~~~V~~~lg 242 (486)
T PRK14953 190 --------ICNE----EKIEYEEKALDLLAQAS---EG-GMRDAASLLDQASTY----GEGKVTIKVVEEFLG 242 (486)
T ss_pred --------HHHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHhC
Confidence 1111 14788899998887653 22 579999988876543 345799999988764
No 187
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=99.17 E-value=9.3e-10 Score=113.00 Aligned_cols=141 Identities=17% Similarity=0.163 Sum_probs=103.8
Q ss_pred eEEEEEeCCCCCC-------chhHHHHHHHHHHHHHhh--cCCCCeEEEEEeeCCC---------cEEEcCC-CccHHHH
Q 004256 563 LVIFVVDASGSMA-------LNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDS---------AEVLLPP-SRSIAMA 623 (765)
Q Consensus 563 ~vv~vvD~SgSM~-------~~rl~~ak~a~~~ll~~~--~~~~d~v~lv~F~~~~---------a~~~~p~-t~~~~~~ 623 (765)
.++|+||+|.||. .+++..++.++..++.+. ..+.|+||||.|++.. ..++.|+ +.+...+
T Consensus 3 ~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~l~~~~~~~l 82 (218)
T cd01458 3 SVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLDLDTPGAERV 82 (218)
T ss_pred EEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeecCCCCCHHHH
Confidence 5899999999993 278999999999998742 5789999999998862 1244555 4566666
Q ss_pred HHHhhcCCC-----------CCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCC
Q 004256 624 RKRLERLPC-----------GGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPS 692 (765)
Q Consensus 624 ~~~l~~l~~-----------gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~ 692 (765)
+..++.+.+ +++|++..||..|.+++...... .....|||+|||..+.+-+
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~--~~~k~IvL~TDg~~p~~~~---------------- 144 (218)
T cd01458 83 EDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKK--KSHKRIFLFTNNDDPHGGD---------------- 144 (218)
T ss_pred HHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhcccc--ccccEEEEECCCCCCCCCC----------------
Confidence 666654432 46899999999999998862211 1233689999999664311
Q ss_pred chhHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 004256 693 SQELKDEILEVAGKIYKAGMSLLVIDTENK 722 (765)
Q Consensus 693 ~~~~~~~~~~~a~~~~~~gi~~~vig~~~~ 722 (765)
....+++...++.+.+.||.+++|+++..
T Consensus 145 -~~~~~~~~~~a~~l~~~gI~i~~i~i~~~ 173 (218)
T cd01458 145 -SIKDSQAAVKAEDLKDKGIELELFPLSSP 173 (218)
T ss_pred -HHHHHHHHHHHHHHHhCCcEEEEEecCCC
Confidence 12346677888899999999999998753
No 188
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.16 E-value=3.4e-10 Score=117.48 Aligned_cols=207 Identities=16% Similarity=0.212 Sum_probs=120.1
Q ss_pred CCCCCcee-e-chHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccc
Q 004256 91 FFPLAAVV-G-QDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (765)
Q Consensus 91 ~~~f~~iv-G-~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (765)
.+.|+.++ | +..+...+.-....+...+++|+||+|||||++++++++.+....
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~------------------------ 73 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRG------------------------ 73 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC------------------------
Confidence 35566666 5 333555553222244556899999999999999999887543100
Q ss_pred ccccccCcccccccCCCeEeCCCCCc-ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCC--HHHHHHHH
Q 004256 169 AEYDTAGNLKTQIARSPFVQIPLGVT-EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD--EGISNLLL 245 (765)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~l~~~~~-e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~--~~~q~~Ll 245 (765)
....|+.+..... ..+++ .+ +.. --+|+||||+.++ ...+..|+
T Consensus 74 -------------~~v~y~~~~~~~~~~~~~~-----------------~~-~~~--~dlliiDdi~~~~~~~~~~~~lf 120 (235)
T PRK08084 74 -------------RAVGYVPLDKRAWFVPEVL-----------------EG-MEQ--LSLVCIDNIECIAGDELWEMAIF 120 (235)
T ss_pred -------------CeEEEEEHHHHhhhhHHHH-----------------HH-hhh--CCEEEEeChhhhcCCHHHHHHHH
Confidence 1112222211000 00000 00 111 1379999999985 44455555
Q ss_pred HHHHcCceEEEeCCeeEEeeCceEEEEeecCCC---CCcchHHHhhhh--cceeecCCCCHhhHHHHHHHHHHHHHhhHH
Q 004256 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQERSNE 320 (765)
Q Consensus 246 ~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e---g~l~~~L~dRf~--~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~ 320 (765)
.++.... + .| ...+|.|++..+ ..+.++|..||. .++.+. |++.+.+..|+...
T Consensus 121 ~l~n~~~---e-~g-------~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~-~~~~~~~~~~l~~~--------- 179 (235)
T PRK08084 121 DLYNRIL---E-SG-------RTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQ-PLSDEEKLQALQLR--------- 179 (235)
T ss_pred HHHHHHH---H-cC-------CCeEEEeCCCChHHcCcccHHHHHHHhCCceeeec-CCCHHHHHHHHHHH---------
Confidence 5554321 0 00 123444544322 335799999995 555666 55677666665421
Q ss_pred HhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 321 ~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
...+ .+.++++++++|+..+.. +.|.++.++...- .+.+.....||.+.+++++.
T Consensus 180 ----------------a~~~----~~~l~~~v~~~L~~~~~~----d~r~l~~~l~~l~-~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 180 ----------------ARLR----GFELPEDVGRFLLKRLDR----EMRTLFMTLDQLD-RASITAQRKLTIPFVKEILK 234 (235)
T ss_pred ----------------HHHc----CCCCCHHHHHHHHHhhcC----CHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHc
Confidence 0111 489999999999876643 5788888888753 44555445699999998875
No 189
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.6e-10 Score=126.73 Aligned_cols=245 Identities=17% Similarity=0.105 Sum_probs=156.1
Q ss_pred CceeechHHHHHHHH---hhh-cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhc-ccccCCCCCCCCcccccccccc
Q 004256 95 AAVVGQDAIKTALLL---GAI-DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVV-GSIANADPTCPDEWEDGLDEKA 169 (765)
Q Consensus 95 ~~ivG~~~~~~aL~l---~~~-~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 169 (765)
+.+.+.+..+..+.. ..+ +....+++|+|++|||||.+++.+.+.+....... .|++||......... ...+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i---~~~i 93 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV---LSKI 93 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH---HHHH
Confidence 348899988887732 222 22344599999999999999999999876533222 688899554221100 0000
Q ss_pred cccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceee-ccCCeEeccccccCCHHHHHHHHHHH
Q 004256 170 EYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLLDEGISNLLLNVL 248 (765)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~-A~~GiL~lDEi~~L~~~~q~~Ll~~l 248 (765)
- ....+. +.++....+++..+. ..+.. ..-=|++|||++.|-..-++.|+.++
T Consensus 94 ~--------~~~~~~----p~~g~~~~~~~~~l~--------------~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~ 147 (366)
T COG1474 94 L--------NKLGKV----PLTGDSSLEILKRLY--------------DNLSKKGKTVIVILDEVDALVDKDGEVLYSLL 147 (366)
T ss_pred H--------HHcCCC----CCCCCchHHHHHHHH--------------HHHHhcCCeEEEEEcchhhhccccchHHHHHH
Confidence 0 000011 111222222222110 00111 11127889999999777555555554
Q ss_pred HcCceEEEeCCeeEEeeCceEEEEeecCC--CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcccc
Q 004256 249 TEGVNIVEREGISFKHPCKPLLIATYNPE--EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (765)
Q Consensus 249 ~~~~~~v~r~G~~~~~p~~~~lIat~N~~--eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~ 326 (765)
..... + ..++.+|+.+|.. ...|.+-+.++|+..--...|++.++..+|+.-....
T Consensus 148 r~~~~-----~-----~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~------------ 205 (366)
T COG1474 148 RAPGE-----N-----KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEE------------ 205 (366)
T ss_pred hhccc-----c-----ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHh------------
Confidence 43321 0 2367889998854 3567788888888763233578999988887633221
Q ss_pred ccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCC
Q 004256 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPR 406 (765)
Q Consensus 327 ~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~hR 406 (765)
-...-.++++++++++..+...+. +.|..+.++|.|.-+|..+++..|+.+|+..|...+-..+
T Consensus 206 ---------------~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~ 269 (366)
T COG1474 206 ---------------GFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDV 269 (366)
T ss_pred ---------------hccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHHH
Confidence 134567889999999988888876 7999999999999999999999999999999965544433
No 190
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=3.2e-10 Score=132.25 Aligned_cols=226 Identities=20% Similarity=0.234 Sum_probs=130.4
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCC-CCCCCccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD-PTCPDEWEDGLD 166 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 166 (765)
++|..|++|+||+.+++.|.-+.......| +||+||+|||||++||.+++.+. |. +.....+|..|.
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln-----------C~~~~~~~~pC~~C~ 80 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN-----------CSHKTDLLEPCQECI 80 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-----------ccccCCCCCchhHHH
Confidence 567789999999999998854444333344 69999999999999999998763 32 111223455553
Q ss_pred ccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHH
Q 004256 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (765)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~ 246 (765)
.-.. ...-++.+... + -.| ++--+.+... ....| ..+...|++|||++.|....++.||.
T Consensus 81 ~~~~-----------~~~Dvieidaa-s---n~~-vd~IReLie~-~~~~P---~~g~~KV~IIDEa~~LT~~A~NALLK 140 (725)
T PRK07133 81 ENVN-----------NSLDIIEMDAA-S---NNG-VDEIRELIEN-VKNLP---TQSKYKIYIIDEVHMLSKSAFNALLK 140 (725)
T ss_pred Hhhc-----------CCCcEEEEecc-c---cCC-HHHHHHHHHH-HHhch---hcCCCEEEEEEChhhCCHHHHHHHHH
Confidence 2110 01112222110 0 000 0000000000 00011 12345699999999999999999999
Q ss_pred HHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcccc
Q 004256 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (765)
Q Consensus 247 ~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~ 326 (765)
.|++- |..+++|.+++ +...+.+.+.+|+.. +.+. |+..+...+.+. .
T Consensus 141 tLEEP-------------P~~tifILaTt-e~~KLl~TI~SRcq~-ieF~-~L~~eeI~~~L~---~------------- 188 (725)
T PRK07133 141 TLEEP-------------PKHVIFILATT-EVHKIPLTILSRVQR-FNFR-RISEDEIVSRLE---F------------- 188 (725)
T ss_pred HhhcC-------------CCceEEEEEcC-ChhhhhHHHHhhcee-EEcc-CCCHHHHHHHHH---H-------------
Confidence 99873 23455565554 445777889999964 3565 334443222222 1
Q ss_pred ccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 004256 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (765)
Q Consensus 327 ~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A 398 (765)
++.. .++.+++++++.++.++. + +.|.++.++.....+ +...|+.++|.++
T Consensus 189 ---------il~k----egI~id~eAl~~LA~lS~---G-slR~AlslLekl~~y----~~~~It~e~V~el 239 (725)
T PRK07133 189 ---------ILEK----ENISYEKNALKLIAKLSS---G-SLRDALSIAEQVSIF----GNNKITLKNVEEL 239 (725)
T ss_pred ---------HHHH----cCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHHh----ccCCCCHHHHHHH
Confidence 1111 136778888777765542 2 567777777665432 2334777777654
No 191
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.16 E-value=4.7e-10 Score=134.29 Aligned_cols=229 Identities=18% Similarity=0.229 Sum_probs=139.8
Q ss_pred ceeechHHHHHHH--Hhhh---c-CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccc
Q 004256 96 AVVGQDAIKTALL--LGAI---D-REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (765)
Q Consensus 96 ~ivG~~~~~~aL~--l~~~---~-~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (765)
++.|.+.+|++++ ++.. . .....++|+||||+|||++++.++..+.+
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~--------------------------- 375 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR--------------------------- 375 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC---------------------------
Confidence 4899999999883 2211 1 12345999999999999999999988753
Q ss_pred cccccCcccccccCCCeEeCCCC--CcccceeeecccccccccCCCcccCCcee----e--ccCCeEeccccccCCHHH-
Q 004256 170 EYDTAGNLKTQIARSPFVQIPLG--VTEDRLIGSVDVEESVKTGTTVFQPGLLA----E--AHRGVLYIDEINLLDEGI- 240 (765)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~l~~~--~~e~~L~G~~d~e~~~~~g~~~~~~Gll~----~--A~~GiL~lDEi~~L~~~~- 240 (765)
+|+.+..+ ..+..+.|+. ..+.|. .+|.+. . ..+.+++||||+.++...
T Consensus 376 ---------------~~~~i~~~~~~d~~~i~g~~----~~~~g~---~~G~~~~~l~~~~~~~~villDEidk~~~~~~ 433 (784)
T PRK10787 376 ---------------KYVRMALGGVRDEAEIRGHR----RTYIGS---MPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMR 433 (784)
T ss_pred ---------------CEEEEEcCCCCCHHHhccch----hccCCC---CCcHHHHHHHhcCCCCCEEEEEChhhcccccC
Confidence 34333322 2223344431 111121 233221 1 245699999999998875
Q ss_pred ---HHHHHHHHHcCceEEEeCCee-EEe-eCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHH
Q 004256 241 ---SNLLLNVLTEGVNIVEREGIS-FKH-PCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (765)
Q Consensus 241 ---q~~Ll~~l~~~~~~v~r~G~~-~~~-p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~ 315 (765)
++.|+++++.+.+....+... ... -.++.+|+|+|.- .++++|++||.++ .+. +++.++..+|+.+...-
T Consensus 434 g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~--~i~~aLl~R~~ii-~~~-~~t~eek~~Ia~~~L~~- 508 (784)
T PRK10787 434 GDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM--NIPAPLLDRMEVI-RLS-GYTEDEKLNIAKRHLLP- 508 (784)
T ss_pred CCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC--CCCHHHhcceeee-ecC-CCCHHHHHHHHHHhhhH-
Confidence 599999999766543332111 111 1468899999965 4999999999764 565 67888888887643210
Q ss_pred HhhHHHhccccccCcHHHHHHHHHhcc-cCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHH-HHH---HHcCC---
Q 004256 316 ERSNEVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK-CLA---ALEGR--- 387 (765)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~il~a~~~-~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~-a~A---~l~gr--- 387 (765)
+.+..... ...+.++++++++|++.|.. -.|.|.+...+.... ..+ .+.+.
T Consensus 509 -------------------k~~~~~~l~~~~l~i~~~ai~~ii~~yt~--e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~ 567 (784)
T PRK10787 509 -------------------KQIERNALKKGELTVDDSAIIGIIRYYTR--EAGVRSLEREISKLCRKAVKQLLLDKSLKH 567 (784)
T ss_pred -------------------HHHHHhCCCCCeEEECHHHHHHHHHhCCc--ccCCcHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 11111111 23589999999999975432 236788776554322 222 23332
Q ss_pred CCCCHHHHHHHH
Q 004256 388 EKVNVDDLKKAV 399 (765)
Q Consensus 388 ~~Vt~edv~~A~ 399 (765)
-.|+.+++++.+
T Consensus 568 v~v~~~~~~~~l 579 (784)
T PRK10787 568 IEINGDNLHDYL 579 (784)
T ss_pred eeecHHHHHHHh
Confidence 247777766544
No 192
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.15 E-value=3.2e-10 Score=137.68 Aligned_cols=214 Identities=21% Similarity=0.251 Sum_probs=131.2
Q ss_pred CceeechHHHHHHHHh----hh---cCC--CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccc
Q 004256 95 AAVVGQDAIKTALLLG----AI---DRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (765)
Q Consensus 95 ~~ivG~~~~~~aL~l~----~~---~~~--~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (765)
..|+||+.++..+.-+ .+ .+. .+.+||.||+|||||++|++|++.+-.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~----------------------- 565 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG----------------------- 565 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC-----------------------
Confidence 4589999998887322 11 111 234899999999999999999997631
Q ss_pred cccccccccCcccccccCCCeEeCCCC-----CcccceeeecccccccccCCCcccCCce----eeccCCeEeccccccC
Q 004256 166 DEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLL----AEAHRGVLYIDEINLL 236 (765)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~l~~~-----~~e~~L~G~~d~e~~~~~g~~~~~~Gll----~~A~~GiL~lDEi~~L 236 (765)
...+++.++.+ .+...|+|.-. + +-|. ...|.| ......|++||||+.+
T Consensus 566 ----------------~~~~~~~~d~s~~~~~~~~~~l~g~~~---g-yvg~--~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 566 ----------------SEDAMIRLDMSEYMEKHTVSKLIGSPP---G-YVGY--NEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred ----------------CccceEEEEchhccccccHHHhcCCCC---c-ccCc--CccchHHHHHHhCCCeEEEECChhhC
Confidence 01122222211 11122333100 0 0000 011112 1223469999999999
Q ss_pred CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC------------------------------------CC
Q 004256 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE------------------------------------GV 280 (765)
Q Consensus 237 ~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e------------------------------------g~ 280 (765)
++++++.|+++|++|.++.. .|..... .+.++|.|||... ..
T Consensus 624 ~~~v~~~Llq~le~g~~~d~-~g~~v~~-~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (821)
T CHL00095 624 HPDIFNLLLQILDDGRLTDS-KGRTIDF-KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQF 701 (821)
T ss_pred CHHHHHHHHHHhccCceecC-CCcEEec-CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHh
Confidence 99999999999999985432 2433333 4788999998510 01
Q ss_pred cchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHH
Q 004256 281 VREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEA 360 (765)
Q Consensus 281 l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a 360 (765)
|+|+|+.|++.+|.+. |.+.+....|+.+...- . ..+ +..+ --.+.++++++++|++.+
T Consensus 702 f~peflnRid~ii~F~-pL~~~~l~~Iv~~~l~~---l--------------~~r-l~~~--~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 702 FRPEFLNRLDEIIVFR-QLTKNDVWEIAEIMLKN---L--------------FKR-LNEQ--GIQLEVTERIKTLLIEEG 760 (821)
T ss_pred cCHHHhccCCeEEEeC-CCCHHHHHHHHHHHHHH---H--------------HHH-HHHC--CcEEEECHHHHHHHHHhc
Confidence 6788999997766555 78888877777654321 1 111 1111 224789999999999876
Q ss_pred HhCCCCCCChHHHHHHH
Q 004256 361 LRGGCQGHRAELYAARV 377 (765)
Q Consensus 361 ~~~g~~s~Ra~i~llr~ 377 (765)
..... |.|.+..+++.
T Consensus 761 ~~~~~-GAR~l~r~i~~ 776 (821)
T CHL00095 761 YNPLY-GARPLRRAIMR 776 (821)
T ss_pred CCCCC-ChhhHHHHHHH
Confidence 55443 66777666543
No 193
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.9e-10 Score=122.87 Aligned_cols=203 Identities=20% Similarity=0.276 Sum_probs=128.4
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCC-Cc
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLG-VT 194 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~-~~ 194 (765)
..+||+.||+|+|||.||+.|++.+. .||+.-+|. +|
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ld------------------------------------------VPfaIcDcTtLT 263 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLD------------------------------------------VPFAICDCTTLT 263 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhC------------------------------------------CCeEEecccchh
Confidence 46899999999999999999999873 466555554 44
Q ss_pred ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCC--------------HHHHHHHHHHHHcCceEEEeCCe
Q 004256 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD--------------EGISNLLLNVLTEGVNIVEREGI 260 (765)
Q Consensus 195 e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~--------------~~~q~~Ll~~l~~~~~~v~r~G~ 260 (765)
....+|. |+|.-+..= ....-+-+++|..||+||||++.+. ..+|..||..++.-.+.|..-|.
T Consensus 264 QAGYVGe-DVEsvi~KL-l~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~ 341 (564)
T KOG0745|consen 264 QAGYVGE-DVESVIQKL-LQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGS 341 (564)
T ss_pred hcccccc-cHHHHHHHH-HHHccCCHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCC
Confidence 5555653 333322110 0111244677889999999999884 46999999999887777733333
Q ss_pred eEEeeCceEEEEeecC---CCC----------------------------------------------------------
Q 004256 261 SFKHPCKPLLIATYNP---EEG---------------------------------------------------------- 279 (765)
Q Consensus 261 ~~~~p~~~~lIat~N~---~eg---------------------------------------------------------- 279 (765)
....+.+.+.|-|+|. +.|
T Consensus 342 ~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLi 421 (564)
T KOG0745|consen 342 RRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLI 421 (564)
T ss_pred CCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchh
Confidence 2222333333333332 000
Q ss_pred --CcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcc---cCC--ccCCHHH
Q 004256 280 --VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREY---LKD--VAIGREQ 352 (765)
Q Consensus 280 --~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~---~~n--v~i~~~~ 352 (765)
-+-|+|.-||.+.|.++ +.+.+....|+. .| ...+...|.. ..| +.+++.+
T Consensus 422 sfGmIPEfVGRfPVlVplh-~L~~~~Lv~VLt-------EP--------------knaL~~Qyk~lf~~~nV~L~fTe~A 479 (564)
T KOG0745|consen 422 SFGMIPEFVGRFPVLVPLH-SLDEDQLVRVLT-------EP--------------KNALGKQYKKLFGMDNVELHFTEKA 479 (564)
T ss_pred hhcCcHHHhcccceEeecc-ccCHHHHHHHHh-------cc--------------hhhHHHHHHHHhccCCeeEEecHHH
Confidence 02367777888877665 445444333321 11 1111222221 234 4789999
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHc
Q 004256 353 LKYLVMEALRGGCQGHRAELYAARVAKCLAALE 385 (765)
Q Consensus 353 l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~ 385 (765)
++.|++++...+. +.|++..+++.+..-|.++
T Consensus 480 l~~IAq~Al~r~T-GARgLRsIlE~~Lleamfe 511 (564)
T KOG0745|consen 480 LEAIAQLALKRKT-GARGLRSILESLLLEAMFE 511 (564)
T ss_pred HHHHHHHHHhhcc-chHHHHHHHHHHHhhhccc
Confidence 9999999998877 8999999999887777654
No 194
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=9.1e-11 Score=129.89 Aligned_cols=159 Identities=23% Similarity=0.300 Sum_probs=109.5
Q ss_pred CCCCceeechHHHHHH--HHhhh-cC---------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCC
Q 004256 92 FPLAAVVGQDAIKTAL--LLGAI-DR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL--~l~~~-~~---------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~ 159 (765)
..|++|-|.+.....| ++..+ .| -..||||.||||||||+||++|+..+
T Consensus 187 v~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel------------------- 247 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL------------------- 247 (802)
T ss_pred cchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-------------------
Confidence 3588999999876666 11111 11 13569999999999999999999876
Q ss_pred cccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeecc---CCeEeccccccC
Q 004256 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEINLL 236 (765)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~---~GiL~lDEi~~L 236 (765)
..||+.++.....+.+.|.- .....-+|.+|. ..|+|||||+.+
T Consensus 248 -----------------------~vPf~~isApeivSGvSGES----------EkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 248 -----------------------GVPFLSISAPEIVSGVSGES----------EKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred -----------------------CCceEeecchhhhcccCccc----------HHHHHHHHHHHhccCCeEEEeeccccc
Confidence 46888876654333333310 011122344442 469999999987
Q ss_pred CH-----------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCCHhh
Q 004256 237 DE-----------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFED 303 (765)
Q Consensus 237 ~~-----------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~~e~ 303 (765)
.+ .++..||..|++=.+. ...| ..+.|||+|| .+..++++|.. ||+-.+.+.+| +...
T Consensus 295 ~pkRe~aqreMErRiVaQLlt~mD~l~~~-~~~g------~~VlVIgATn-RPDslDpaLRRaGRFdrEI~l~vP-~e~a 365 (802)
T KOG0733|consen 295 TPKREEAQREMERRIVAQLLTSMDELSNE-KTKG------DPVLVIGATN-RPDSLDPALRRAGRFDREICLGVP-SETA 365 (802)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhhccccc-ccCC------CCeEEEecCC-CCcccCHHHhccccccceeeecCC-chHH
Confidence 54 5788999999874311 1112 3589999999 67778888875 99998888875 8888
Q ss_pred HHHHHHHH
Q 004256 304 RVAAVGIA 311 (765)
Q Consensus 304 r~dI~~l~ 311 (765)
|++|+...
T Consensus 366 R~~IL~~~ 373 (802)
T KOG0733|consen 366 REEILRII 373 (802)
T ss_pred HHHHHHHH
Confidence 89998743
No 195
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.6e-10 Score=115.80 Aligned_cols=219 Identities=21% Similarity=0.223 Sum_probs=133.5
Q ss_pred CCCCceeechHHHHHHHHhhhcCC-------------CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCC
Q 004256 92 FPLAAVVGQDAIKTALLLGAIDRE-------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~~~~~-------------~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~ 158 (765)
-.+++|-|.+..+..|.-+.+-|. ..+||+|||||||||++||+.+..-.
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~----------------- 230 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN----------------- 230 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc-----------------
Confidence 456789999998888755544332 34699999999999999999987532
Q ss_pred CcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEecccccc
Q 004256 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINL 235 (765)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~~ 235 (765)
..|..+...-....++|. |+. .....++.| ...|+||||++.
T Consensus 231 -------------------------aTFLKLAgPQLVQMfIGd---------GAk-LVRDAFaLAKEkaP~IIFIDElDA 275 (424)
T KOG0652|consen 231 -------------------------ATFLKLAGPQLVQMFIGD---------GAK-LVRDAFALAKEKAPTIIFIDELDA 275 (424)
T ss_pred -------------------------chHHHhcchHHHhhhhcc---------hHH-HHHHHHHHhhccCCeEEEEechhh
Confidence 222222222222234442 221 011112222 346999999987
Q ss_pred C-----------CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCCHh
Q 004256 236 L-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFE 302 (765)
Q Consensus 236 L-----------~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~~e 302 (765)
+ +.++|..+|.+|..-. |.+ ...++.+||+|| .-.-++|+|+. |++-.+++..| ..+
T Consensus 276 IGtKRfDSek~GDREVQRTMLELLNQLD------GFs--s~~~vKviAATN-RvDiLDPALlRSGRLDRKIEfP~P-ne~ 345 (424)
T KOG0652|consen 276 IGTKRFDSEKAGDREVQRTMLELLNQLD------GFS--SDDRVKVIAATN-RVDILDPALLRSGRLDRKIEFPHP-NEE 345 (424)
T ss_pred hccccccccccccHHHHHHHHHHHHhhc------CCC--CccceEEEeecc-cccccCHHHhhcccccccccCCCC-ChH
Confidence 6 4589999999886522 211 234688999999 44567888885 78887766654 555
Q ss_pred hHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q 004256 303 DRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLA 382 (765)
Q Consensus 303 ~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A 382 (765)
.|..|+.+ |...-||.-.-+ .+.++.....++. -....++--|.-+|
T Consensus 346 aRarIlQI-----------------------------HsRKMnv~~DvN-feELaRsTddFNG---AQcKAVcVEAGMiA 392 (424)
T KOG0652|consen 346 ARARILQI-----------------------------HSRKMNVSDDVN-FEELARSTDDFNG---AQCKAVCVEAGMIA 392 (424)
T ss_pred HHHHHHHH-----------------------------hhhhcCCCCCCC-HHHHhhcccccCc---hhheeeehhhhHHH
Confidence 55555442 222222221111 2334443444433 23344455566677
Q ss_pred HHcCCCCCCHHHHHHHHHHhcCC
Q 004256 383 ALEGREKVNVDDLKKAVELVILP 405 (765)
Q Consensus 383 ~l~gr~~Vt~edv~~A~~lvl~h 405 (765)
.-.+..+|+-+|+.+++..|...
T Consensus 393 LRr~atev~heDfmegI~eVqak 415 (424)
T KOG0652|consen 393 LRRGATEVTHEDFMEGILEVQAK 415 (424)
T ss_pred HhcccccccHHHHHHHHHHHHHh
Confidence 78889999999999998877653
No 196
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.5e-10 Score=115.45 Aligned_cols=194 Identities=22% Similarity=0.284 Sum_probs=126.5
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCcc
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e 195 (765)
..+|||+||||||||.+||+++... ...|+.+..+...
T Consensus 181 PKGvlLygppgtGktLlaraVahht------------------------------------------~c~firvsgselv 218 (404)
T KOG0728|consen 181 PKGVLLYGPPGTGKTLLARAVAHHT------------------------------------------DCTFIRVSGSELV 218 (404)
T ss_pred CcceEEecCCCCchhHHHHHHHhhc------------------------------------------ceEEEEechHHHH
Confidence 4689999999999999999999864 3456655443333
Q ss_pred cceeeecccccccccCCCcccCCceeec---cCCeEeccccccC-----------CHHHHHHHHHHHHcCceEEEeCCee
Q 004256 196 DRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINLL-----------DEGISNLLLNVLTEGVNIVEREGIS 261 (765)
Q Consensus 196 ~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~~L-----------~~~~q~~Ll~~l~~~~~~v~r~G~~ 261 (765)
..++|. |.. ...-++..| ...|+|.|||+.+ +.++|..+|++|..-. |.
T Consensus 219 qk~ige---------gsr-mvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqld------gf- 281 (404)
T KOG0728|consen 219 QKYIGE---------GSR-MVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLD------GF- 281 (404)
T ss_pred HHHhhh---------hHH-HHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcc------cc-
Confidence 333442 322 111222222 2469999999987 4689999999886522 11
Q ss_pred EEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHH
Q 004256 262 FKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILA 339 (765)
Q Consensus 262 ~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a 339 (765)
....++-+|.+|| .-.-++++|+. |++-.+++. ||+.+.|.||+.+-..-.
T Consensus 282 -eatknikvimatn-ridild~allrpgridrkiefp-~p~e~ar~~ilkihsrkm------------------------ 334 (404)
T KOG0728|consen 282 -EATKNIKVIMATN-RIDILDPALLRPGRIDRKIEFP-PPNEEARLDILKIHSRKM------------------------ 334 (404)
T ss_pred -ccccceEEEEecc-ccccccHhhcCCCcccccccCC-CCCHHHHHHHHHHhhhhh------------------------
Confidence 1223678899999 44556777775 787777766 678888888876421110
Q ss_pred hcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcC
Q 004256 340 REYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (765)
Q Consensus 340 ~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~ 404 (765)
.+...+. ++ .++.+....|.-....++.-|.-+|.-+.|-.||.||++-|+.-|+.
T Consensus 335 -nl~rgi~-----l~---kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 335 -NLTRGIN-----LR---KIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred -chhcccC-----HH---HHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHh
Confidence 0001111 12 23445555566667777778888888888889999999999887765
No 197
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1e-09 Score=116.33 Aligned_cols=241 Identities=18% Similarity=0.149 Sum_probs=138.6
Q ss_pred CCCCCceeechHHHHHH-HHhhh-cCC------CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccc
Q 004256 91 FFPLAAVVGQDAIKTAL-LLGAI-DRE------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL-~l~~~-~~~------~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 162 (765)
.-||.++|-+-.+.+.+ .++.. +.+ -.+||+|||||||||++||-|+..+.- .
T Consensus 351 k~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGl----D--------------- 411 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGL----D--------------- 411 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCC----c---------------
Confidence 45789999999988888 22222 111 245999999999999999999998751 0
Q ss_pred ccccccccccccCcccccccCCCeEeCCCCC----cccceeeecccccccccCCCcccCCceeeccCCeEecccccc---
Q 004256 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGV----TEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINL--- 235 (765)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~----~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~--- 235 (765)
++.. ..|+ + -|.+. -...||. -......|+ +|||||.+.
T Consensus 412 ---YA~m---TGGD---------V--APlG~qaVTkiH~lFD----------WakkS~rGL-------llFIDEADAFLc 457 (630)
T KOG0742|consen 412 ---YAIM---TGGD---------V--APLGAQAVTKIHKLFD----------WAKKSRRGL-------LLFIDEADAFLC 457 (630)
T ss_pred ---eehh---cCCC---------c--cccchHHHHHHHHHHH----------HHhhcccce-------EEEehhhHHHHH
Confidence 0000 0000 0 01110 0012222 222233444 589999975
Q ss_pred ------CCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHH
Q 004256 236 ------LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVG 309 (765)
Q Consensus 236 ------L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~ 309 (765)
|+......|-.+| .|.|. +.-+|+++.++| .+|.|+.+.-|||+-+|++++| -.++|..++.
T Consensus 458 eRnktymSEaqRsaLNAlL-------fRTGd---qSrdivLvlAtN-rpgdlDsAV~DRide~veFpLP-GeEERfkll~ 525 (630)
T KOG0742|consen 458 ERNKTYMSEAQRSALNALL-------FRTGD---QSRDIVLVLATN-RPGDLDSAVNDRIDEVVEFPLP-GEEERFKLLN 525 (630)
T ss_pred HhchhhhcHHHHHHHHHHH-------HHhcc---cccceEEEeccC-CccchhHHHHhhhhheeecCCC-ChHHHHHHHH
Confidence 4555444444443 22222 234789999999 8999999999999999988875 6677777766
Q ss_pred HHHHHHHhhHHHhccccccC-cHHHHHHHHHhcccCCccCCHHHHH-HHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCC
Q 004256 310 IATQFQERSNEVFKMVEEET-DLAKTQIILAREYLKDVAIGREQLK-YLVMEALRGGCQGHRAELYAARVAKCLAALEGR 387 (765)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~-~~~~~~il~a~~~~~nv~i~~~~l~-~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr 387 (765)
+. ++.+-. +....- ...-..++.. .-..+.+...... .+-+.+......|.|..-.++--..+.++-...
T Consensus 526 lY---lnkyi~---~~~~~~~~~~~~~lfkk--~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYgsed 597 (630)
T KOG0742|consen 526 LY---LNKYIL---KPATSGKPGKWSHLFKK--ESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGSED 597 (630)
T ss_pred HH---HHHHhc---CcCCCCCCchhhHHHhh--hhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcccc
Confidence 42 222211 111111 1111111111 1123455543333 344455566666889988888777766665555
Q ss_pred CCCCHHHHHHHHHHhcC
Q 004256 388 EKVNVDDLKKAVELVIL 404 (765)
Q Consensus 388 ~~Vt~edv~~A~~lvl~ 404 (765)
..++..-+++.+.+...
T Consensus 598 cvLd~~lf~e~v~ykv~ 614 (630)
T KOG0742|consen 598 CVLDEALFDERVDYKVQ 614 (630)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 55666667777776654
No 198
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.13 E-value=7.2e-10 Score=120.36 Aligned_cols=211 Identities=18% Similarity=0.112 Sum_probs=121.6
Q ss_pred cCCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccc
Q 004256 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (765)
+++|..|++++|++..+..+.-..-.....+ +||+||+|+|||++|+++++.+..
T Consensus 14 kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~------------------------ 69 (316)
T PHA02544 14 KYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA------------------------ 69 (316)
T ss_pred ccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc------------------------
Confidence 4567789999999999888843322233334 555899999999999999886531
Q ss_pred ccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccC-CHHHHHHHH
Q 004256 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL-DEGISNLLL 245 (765)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L-~~~~q~~Ll 245 (765)
+++.+++.. .. ...+ ...+.. ...... ..+...+|||||++.+ ....++.|.
T Consensus 70 ------------------~~~~i~~~~--~~-~~~i--~~~l~~--~~~~~~--~~~~~~vliiDe~d~l~~~~~~~~L~ 122 (316)
T PHA02544 70 ------------------EVLFVNGSD--CR-IDFV--RNRLTR--FASTVS--LTGGGKVIIIDEFDRLGLADAQRHLR 122 (316)
T ss_pred ------------------cceEeccCc--cc-HHHH--HHHHHH--HHHhhc--ccCCCeEEEEECcccccCHHHHHHHH
Confidence 122222221 00 0000 000000 000000 0134679999999999 777888888
Q ss_pred HHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccc
Q 004256 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (765)
Q Consensus 246 ~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~ 325 (765)
.++++. +.++++|.++| ....+.+.|.+||..+ .+.. |..+.+.+++.. +.....
T Consensus 123 ~~le~~-------------~~~~~~Ilt~n-~~~~l~~~l~sR~~~i-~~~~-p~~~~~~~il~~---~~~~~~------ 177 (316)
T PHA02544 123 SFMEAY-------------SKNCSFIITAN-NKNGIIEPLRSRCRVI-DFGV-PTKEEQIEMMKQ---MIVRCK------ 177 (316)
T ss_pred HHHHhc-------------CCCceEEEEcC-ChhhchHHHHhhceEE-EeCC-CCHHHHHHHHHH---HHHHHH------
Confidence 888753 23567888888 4456789999999754 5654 455555555442 211110
Q ss_pred cccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 004256 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (765)
Q Consensus 326 ~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~ 397 (765)
.++ ...++.++++++..+++... . +.|..+..+... + ....++.+++..
T Consensus 178 ---------~~~----~~~~~~i~~~al~~l~~~~~---~-d~r~~l~~l~~~---~---~~~~i~~~~l~~ 226 (316)
T PHA02544 178 ---------GIL----EAEGVEVDMKVLAALVKKNF---P-DFRRTINELQRY---A---STGKIDAGILSE 226 (316)
T ss_pred ---------HHH----HhcCCCCCHHHHHHHHHhcC---C-CHHHHHHHHHHH---H---ccCCCCHHHHHH
Confidence 011 11356778888777765432 1 346665555422 1 124677766654
No 199
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.13 E-value=1.9e-10 Score=139.75 Aligned_cols=160 Identities=18% Similarity=0.189 Sum_probs=100.2
Q ss_pred CCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccccccc
Q 004256 93 PLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYD 172 (765)
Q Consensus 93 ~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (765)
.++.|+|++..++.+.-........+++|+||||||||++|+.|+..+....
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~---------------------------- 228 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRD---------------------------- 228 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCC----------------------------
Confidence 3567999999888884444444567899999999999999999998764200
Q ss_pred ccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcc-cCCceee---ccCCeEeccccccCCH--------HH
Q 004256 173 TAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVF-QPGLLAE---AHRGVLYIDEINLLDE--------GI 240 (765)
Q Consensus 173 ~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~-~~Gll~~---A~~GiL~lDEi~~L~~--------~~ 240 (765)
.+......+|+.++.+. ++.+ .-+.|.+.. ...++.. ..+.|||||||+.|-. ++
T Consensus 229 ----vp~~l~~~~i~~l~~~~----l~ag-----~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~ 295 (821)
T CHL00095 229 ----VPDILEDKLVITLDIGL----LLAG-----TKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDA 295 (821)
T ss_pred ----CChhhcCCeEEEeeHHH----Hhcc-----CCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccH
Confidence 00001244555554331 1110 000111100 0112222 2345899999987632 46
Q ss_pred HHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC----CcchHHHhhhhcceeecCCCCHhhHHHHHHH
Q 004256 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (765)
Q Consensus 241 q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg----~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l 310 (765)
.+.|..++..|. +++|++||+++. +..+.|..||..+ .+.. ++.++...|+..
T Consensus 296 a~lLkp~l~rg~---------------l~~IgaTt~~ey~~~ie~D~aL~rRf~~I-~v~e-p~~~e~~aILr~ 352 (821)
T CHL00095 296 ANILKPALARGE---------------LQCIGATTLDEYRKHIEKDPALERRFQPV-YVGE-PSVEETIEILFG 352 (821)
T ss_pred HHHhHHHHhCCC---------------cEEEEeCCHHHHHHHHhcCHHHHhcceEE-ecCC-CCHHHHHHHHHH
Confidence 778888888775 688999998764 4568999999874 6764 566666666653
No 200
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.5e-10 Score=129.39 Aligned_cols=202 Identities=22% Similarity=0.334 Sum_probs=135.1
Q ss_pred eeechHHHHHHH-Hh---hhcCC-CCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccccc
Q 004256 97 VVGQDAIKTALL-LG---AIDRE-IGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (765)
Q Consensus 97 ivG~~~~~~aL~-l~---~~~~~-~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (765)
-.|-+.+|..++ .. ...+. .++ ++|+||||+|||+|++.|++.+.
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~----------------------------- 375 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG----------------------------- 375 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC-----------------------------
Confidence 467788888772 22 22222 334 88999999999999999999875
Q ss_pred ccccCcccccccCCCeEeCCCC--CcccceeeecccccccccCCCcccCCceeec------cCCeEeccccccCCHHH--
Q 004256 171 YDTAGNLKTQIARSPFVQIPLG--VTEDRLIGSVDVEESVKTGTTVFQPGLLAEA------HRGVLYIDEINLLDEGI-- 240 (765)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~l~~~--~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A------~~GiL~lDEi~~L~~~~-- 240 (765)
+.||.+..+ -.|.++-|| +--+-| .-||.+-++ .+-+++||||+.|..+.
T Consensus 376 -------------RkfvR~sLGGvrDEAEIRGH----RRTYIG---amPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rG 435 (782)
T COG0466 376 -------------RKFVRISLGGVRDEAEIRGH----RRTYIG---AMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRG 435 (782)
T ss_pred -------------CCEEEEecCccccHHHhccc----cccccc---cCChHHHHHHHHhCCcCCeEEeechhhccCCCCC
Confidence 467776655 344566665 222223 246665543 56799999999997643
Q ss_pred --HHHHHHHHHcCceEEEeCCeeEEee---CceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHH
Q 004256 241 --SNLLLNVLTEGVNIVEREGISFKHP---CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (765)
Q Consensus 241 --q~~Ll~~l~~~~~~v~r~G~~~~~p---~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~ 315 (765)
..+||++|+-..|.-.++-. ..+| .++++|+|.| .-..++.+|+||..++ .+. -+..+++.+|.... .
T Consensus 436 DPaSALLEVLDPEQN~~F~DhY-Lev~yDLS~VmFiaTAN-sl~tIP~PLlDRMEiI-~ls-gYt~~EKl~IAk~~--L- 508 (782)
T COG0466 436 DPASALLEVLDPEQNNTFSDHY-LEVPYDLSKVMFIATAN-SLDTIPAPLLDRMEVI-RLS-GYTEDEKLEIAKRH--L- 508 (782)
T ss_pred ChHHHHHhhcCHhhcCchhhcc-ccCccchhheEEEeecC-ccccCChHHhcceeee-eec-CCChHHHHHHHHHh--c-
Confidence 48999999865543222211 1122 3789999999 5556789999999886 787 48889888887632 1
Q ss_pred HhhHHHhccccccCcHHHHHHHHHhcc-cCCccCCHHHHHHHHHH-HHhCCCCCCChHHHH
Q 004256 316 ERSNEVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVME-ALRGGCQGHRAELYA 374 (765)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~il~a~~~-~~nv~i~~~~l~~l~~~-a~~~g~~s~Ra~i~l 374 (765)
.-+.+..+.. ..++.++++++..|.+. +++.|+ |.+..-
T Consensus 509 -----------------iPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGV---R~LeR~ 549 (782)
T COG0466 509 -----------------IPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGV---RNLERE 549 (782)
T ss_pred -----------------chHHHHHcCCCccceeecHHHHHHHHHHHhHhhhh---hHHHHH
Confidence 1123344444 35699999999988875 566655 776553
No 201
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.12 E-value=3.8e-11 Score=118.06 Aligned_cols=115 Identities=27% Similarity=0.392 Sum_probs=77.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC-CcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCcc
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP-PIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e 195 (765)
..+||.||+|+|||.+|++|++.+. . ...+++.++++...
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~---------------------------------------~~~~~~~~d~s~~~ 44 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVG---------------------------------------SERPLIRIDMSEYS 44 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-S---------------------------------------SCCEEEEEEGGGHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccC---------------------------------------CccchHHHhhhccc
Confidence 5799999999999999999999875 2 24456655444211
Q ss_pred cceeeecccccccccCCCcccCCceeeccCCeEeccccccCCH-----------HHHHHHHHHHHcCceEEEeCCeeEEe
Q 004256 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE-----------GISNLLLNVLTEGVNIVEREGISFKH 264 (765)
Q Consensus 196 ~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~-----------~~q~~Ll~~l~~~~~~v~r~G~~~~~ 264 (765)
. ..|.+..+ .......+|....+++||+|||||+.+.+ .+|+.||++|++|.+.- ..| ...-
T Consensus 45 ~----~~~~~~~~-~~l~~~~~~~v~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d-~~g-~~vd 117 (171)
T PF07724_consen 45 E----GDDVESSV-SKLLGSPPGYVGAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTD-SYG-RTVD 117 (171)
T ss_dssp S----HHHCSCHC-HHHHHHTTCHHHHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEE-TTC-CEEE
T ss_pred c----cchHHhhh-hhhhhcccceeeccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceec-ccc-eEEE
Confidence 1 00000000 00011234556666788999999999999 99999999999998542 233 2233
Q ss_pred eCceEEEEeecCC
Q 004256 265 PCKPLLIATYNPE 277 (765)
Q Consensus 265 p~~~~lIat~N~~ 277 (765)
-.++++|+|+|-.
T Consensus 118 ~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 118 TSNIIFIMTSNFG 130 (171)
T ss_dssp GTTEEEEEEESSS
T ss_pred eCCceEEEecccc
Confidence 3589999999963
No 202
>PRK06893 DNA replication initiation factor; Validated
Probab=99.12 E-value=1e-09 Score=113.54 Aligned_cols=209 Identities=12% Similarity=0.153 Sum_probs=121.0
Q ss_pred CCCCCCceeechHHHHHH-HHhhhc-CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 90 QFFPLAAVVGQDAIKTAL-LLGAID-REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL-~l~~~~-~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
....|+.++|++...-+. ...... .....++|+|++|||||+|++++++.+...
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~------------------------ 66 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN------------------------ 66 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc------------------------
Confidence 456788898776533222 111111 122347999999999999999999864210
Q ss_pred cccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCC--HHHHHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD--EGISNLLL 245 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~--~~~q~~Ll 245 (765)
+ .+..|+.... . ..+. ... ..+ + .+..+|+||||+.+. ...+..|+
T Consensus 67 -------~------~~~~y~~~~~--~--~~~~-----~~~-------~~~-~--~~~dlLilDDi~~~~~~~~~~~~l~ 114 (229)
T PRK06893 67 -------Q------RTAIYIPLSK--S--QYFS-----PAV-------LEN-L--EQQDLVCLDDLQAVIGNEEWELAIF 114 (229)
T ss_pred -------C------CCeEEeeHHH--h--hhhh-----HHH-------Hhh-c--ccCCEEEEeChhhhcCChHHHHHHH
Confidence 0 1222332210 0 0010 000 001 1 123589999999874 44556677
Q ss_pred HHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCC---cchHHHhhhh--cceeecCCCCHhhHHHHHHHHHHHHHhhHH
Q 004256 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV---VREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQERSNE 320 (765)
Q Consensus 246 ~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~---l~~~L~dRf~--~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~ 320 (765)
..++... + .| ..++|.|+|..+.. ..++|..|+. ..+.+. |++.+.+..|+.....
T Consensus 115 ~l~n~~~---~-~~-------~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~-~pd~e~~~~iL~~~a~------- 175 (229)
T PRK06893 115 DLFNRIK---E-QG-------KTLLLISADCSPHALSIKLPDLASRLTWGEIYQLN-DLTDEQKIIVLQRNAY------- 175 (229)
T ss_pred HHHHHHH---H-cC-------CcEEEEeCCCChHHccccchhHHHHHhcCCeeeCC-CCCHHHHHHHHHHHHH-------
Confidence 7665432 0 01 12344445533333 3389999986 455676 5677777777653211
Q ss_pred HhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 321 ~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
. .++.++++++++|+..+.. +.|.++.++...- .+.+.....||...+++++.
T Consensus 176 ------------------~----~~l~l~~~v~~~L~~~~~~----d~r~l~~~l~~l~-~~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 176 ------------------Q----RGIELSDEVANFLLKRLDR----DMHTLFDALDLLD-KASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred ------------------H----cCCCCCHHHHHHHHHhccC----CHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHhc
Confidence 1 1589999999999766532 5788888887653 34444333799999998764
No 203
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.12 E-value=1.2e-09 Score=122.47 Aligned_cols=241 Identities=19% Similarity=0.166 Sum_probs=140.3
Q ss_pred CCceeechHHHHHHHHh---hh-cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcc-hhcccccCCCCCCCCccccccccc
Q 004256 94 LAAVVGQDAIKTALLLG---AI-DREIGGIAISGRRGTAKTVMARGLHAILPPIE-VVVGSIANADPTCPDEWEDGLDEK 168 (765)
Q Consensus 94 f~~ivG~~~~~~aL~l~---~~-~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 168 (765)
.+.++|++..++.|... .+ .....+++|+|+||||||++++.+.+.+.... .+..+++||....... ..+. .
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~--~~~~-~ 105 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY--AIFS-E 105 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH--HHHH-H
Confidence 36789999988877322 22 22345699999999999999999998764322 2334455664331100 0000 0
Q ss_pred ccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec-cCCeEeccccccCC----HHHHHH
Q 004256 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA-HRGVLYIDEINLLD----EGISNL 243 (765)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A-~~GiL~lDEi~~L~----~~~q~~ 243 (765)
+.....+ ...| ..+.+.++++..+ ...+... ..-+|+|||++.+. .+.+..
T Consensus 106 i~~~l~~------~~~~----~~~~~~~~~~~~~--------------~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~ 161 (394)
T PRK00411 106 IARQLFG------HPPP----SSGLSFDELFDKI--------------AEYLDERDRVLIVALDDINYLFEKEGNDVLYS 161 (394)
T ss_pred HHHHhcC------CCCC----CCCCCHHHHHHHH--------------HHHHHhcCCEEEEEECCHhHhhccCCchHHHH
Confidence 0000000 0000 0000111111100 0001111 12378899999986 455566
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC--CCcchHHHhhhhcc-eeecCCCCHhhHHHHHHHHHHHHHhhHH
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAIN-LSADLPMTFEDRVAAVGIATQFQERSNE 320 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e--g~l~~~L~dRf~~~-v~i~~p~~~e~r~dI~~l~~~~~~~~~~ 320 (765)
|++.+++.. ..++.+|+++|... ..+.+.+..||... +.+. |++.++..+|+.....
T Consensus 162 l~~~~~~~~------------~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~-py~~~e~~~il~~r~~------- 221 (394)
T PRK00411 162 LLRAHEEYP------------GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFP-PYTADEIFDILKDRVE------- 221 (394)
T ss_pred HHHhhhccC------------CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecC-CCCHHHHHHHHHHHHH-------
Confidence 666554321 11467788877532 34677788888643 3343 6677776666542210
Q ss_pred HhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 321 ~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
..+ ....+++++++.+++.+..... ..|..+.+++.|..+|..+|...|+.+||.+|+.
T Consensus 222 -------------------~~~-~~~~~~~~~l~~i~~~~~~~~G-d~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~ 280 (394)
T PRK00411 222 -------------------EGF-YPGVVDDEVLDLIADLTAREHG-DARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYE 280 (394)
T ss_pred -------------------hhc-ccCCCCHhHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 001 1235788999999998866433 5799999999999999999999999999999998
Q ss_pred Hh
Q 004256 401 LV 402 (765)
Q Consensus 401 lv 402 (765)
.+
T Consensus 281 ~~ 282 (394)
T PRK00411 281 KS 282 (394)
T ss_pred HH
Confidence 76
No 204
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=8.6e-11 Score=119.98 Aligned_cols=148 Identities=23% Similarity=0.290 Sum_probs=98.9
Q ss_pred cCCCCCCCceeechHHHHHHHHhhhcCCC------------CcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCC
Q 004256 88 GRQFFPLAAVVGQDAIKTALLLGAIDREI------------GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l~~~~~~~------------~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~ 155 (765)
..+...+++|.|.+.+|.+|.-+.+-|-. .++||+||||||||.||++++-..
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA--------------- 190 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA--------------- 190 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---------------
Confidence 34456789999999999999766554421 359999999999999999998753
Q ss_pred CCCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEeccc
Q 004256 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (765)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDE 232 (765)
+..|..+..+-..+.+.|.- ......+++.| ...|+||||
T Consensus 191 ---------------------------nSTFFSvSSSDLvSKWmGES----------EkLVknLFemARe~kPSIIFiDE 233 (439)
T KOG0739|consen 191 ---------------------------NSTFFSVSSSDLVSKWMGES----------EKLVKNLFEMARENKPSIIFIDE 233 (439)
T ss_pred ---------------------------CCceEEeehHHHHHHHhccH----------HHHHHHHHHHHHhcCCcEEEeeh
Confidence 34566665555555566631 11222344443 346999999
Q ss_pred cccCCH-----------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCC
Q 004256 233 INLLDE-----------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLP 298 (765)
Q Consensus 233 i~~L~~-----------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p 298 (765)
|+.|-. .+-..+|--|+ |+ |.. ...+.|+++|| -+-.|+.++..||.-.+.|.+|
T Consensus 234 iDslcg~r~enEseasRRIKTEfLVQMq-GV------G~d---~~gvLVLgATN-iPw~LDsAIRRRFekRIYIPLP 299 (439)
T KOG0739|consen 234 IDSLCGSRSENESEASRRIKTEFLVQMQ-GV------GND---NDGVLVLGATN-IPWVLDSAIRRRFEKRIYIPLP 299 (439)
T ss_pred hhhhccCCCCCchHHHHHHHHHHHHhhh-cc------ccC---CCceEEEecCC-CchhHHHHHHHHhhcceeccCC
Confidence 998731 23333433332 22 110 12467889999 6778889999999998888665
No 205
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.5e-10 Score=113.02 Aligned_cols=193 Identities=22% Similarity=0.312 Sum_probs=113.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCcc
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e 195 (765)
..+||++||||||||+||+++++.- ...|+.+
T Consensus 189 prgvllygppg~gktml~kava~~t------------------------------------------~a~firv------ 220 (408)
T KOG0727|consen 189 PRGVLLYGPPGTGKTMLAKAVANHT------------------------------------------TAAFIRV------ 220 (408)
T ss_pred CcceEEeCCCCCcHHHHHHHHhhcc------------------------------------------chheeee------
Confidence 3679999999999999999999753 2345543
Q ss_pred cceeeecccccccccCCCcccCCcee---eccCCeEeccccccC-----------CHHHHHHHHHHHHcCceEEEeCCee
Q 004256 196 DRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYIDEINLL-----------DEGISNLLLNVLTEGVNIVEREGIS 261 (765)
Q Consensus 196 ~~L~G~~d~e~~~~~g~~~~~~Gll~---~A~~GiL~lDEi~~L-----------~~~~q~~Ll~~l~~~~~~v~r~G~~ 261 (765)
+|+.-+.+-+.+|..- ....+. +....|+|||||+.+ +.++|..|+++|..-. |-
T Consensus 221 ---vgsefvqkylgegprm-vrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmd------gf- 289 (408)
T KOG0727|consen 221 ---VGSEFVQKYLGEGPRM-VRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMD------GF- 289 (408)
T ss_pred ---ccHHHHHHHhccCcHH-HHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhcc------Cc-
Confidence 3332222333234321 111111 223469999999875 5688999999886422 21
Q ss_pred EEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHH
Q 004256 262 FKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILA 339 (765)
Q Consensus 262 ~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a 339 (765)
....++.+|.+|| ....++|+|+. |++-.+++. +++||..-+- |..- ..
T Consensus 290 -dq~~nvkvimatn-radtldpallrpgrldrkiefp---lpdrrqkrlv----f~ti--------------------ts 340 (408)
T KOG0727|consen 290 -DQTTNVKVIMATN-RADTLDPALLRPGRLDRKIEFP---LPDRRQKRLV----FSTI--------------------TS 340 (408)
T ss_pred -CcccceEEEEecC-cccccCHhhcCCccccccccCC---CCchhhhhhh----HHhh--------------------hh
Confidence 1235788999999 55667788875 787776654 4444432111 1000 00
Q ss_pred hcccCCccCCHHH-HHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcC
Q 004256 340 REYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (765)
Q Consensus 340 ~~~~~nv~i~~~~-l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~ 404 (765)
...+++++ ++.++ |+...+ |.-..-.++.-|.-+|--+.|..|...|+++|..-+..
T Consensus 341 -----km~ls~~vdle~~v--~rpdki-s~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 341 -----KMNLSDEVDLEDLV--ARPDKI-SGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred -----cccCCcccCHHHHh--cCcccc-chhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcC
Confidence 01112111 11111 222222 33334456677777888888999999999999987654
No 206
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.10 E-value=2.4e-09 Score=118.13 Aligned_cols=229 Identities=21% Similarity=0.271 Sum_probs=132.5
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCC-cEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC---CCCccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIG-GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT---CPDEWEDG 164 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~-~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~---~~~~~~~~ 164 (765)
.++-.|++|+|++.++..|.-........ .+||+||+|+|||++|+.+++.+. |... .|-..|..
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~-----------~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN-----------CQNGPDGEPCNECES 76 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCCCCHH
Confidence 45667899999999999885443333333 479999999999999999998864 2211 11112223
Q ss_pred ccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHH
Q 004256 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (765)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~L 244 (765)
|..... + ....++.+.... ..+.-++ +.+... ....| ..++..+++|||++.++...++.|
T Consensus 77 c~~~~~----~------~~~~~~~~~~~~----~~~~~~~-~~l~~~-~~~~p---~~~~~~vviidea~~l~~~~~~~L 137 (355)
T TIGR02397 77 CKEINS----G------SSLDVIEIDAAS----NNGVDDI-REILDN-VKYAP---SSGKYKVYIIDEVHMLSKSAFNAL 137 (355)
T ss_pred HHHHhc----C------CCCCEEEeeccc----cCCHHHH-HHHHHH-HhcCc---ccCCceEEEEeChhhcCHHHHHHH
Confidence 322111 0 122333332210 0000000 000000 00011 123456999999999999999999
Q ss_pred HHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcc
Q 004256 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (765)
Q Consensus 245 l~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~ 324 (765)
+..+++. |..+++|.++| +...+.+.|..|+.. +.+. |+..++..+++. ..
T Consensus 138 l~~le~~-------------~~~~~lIl~~~-~~~~l~~~l~sr~~~-~~~~-~~~~~~l~~~l~---~~---------- 188 (355)
T TIGR02397 138 LKTLEEP-------------PEHVVFILATT-EPHKIPATILSRCQR-FDFK-RIPLEDIVERLK---KI---------- 188 (355)
T ss_pred HHHHhCC-------------ccceeEEEEeC-CHHHHHHHHHhheeE-EEcC-CCCHHHHHHHHH---HH----------
Confidence 9999763 23456666665 334566788889854 3554 445554433332 11
Q ss_pred ccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 325 ~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
+.. .++.+++++++++++.+ +. +.|..+..+..+... .+ ..|+.+||++++.
T Consensus 189 ------------~~~----~g~~i~~~a~~~l~~~~---~g-~~~~a~~~lekl~~~---~~-~~it~~~v~~~~~ 240 (355)
T TIGR02397 189 ------------LDK----EGIKIEDEALELIARAA---DG-SLRDALSLLDQLISF---GN-GNITYEDVNELLG 240 (355)
T ss_pred ------------HHH----cCCCCCHHHHHHHHHHc---CC-ChHHHHHHHHHHHhh---cC-CCCCHHHHHHHhC
Confidence 111 14678889888887654 33 567777776655443 22 4599999988763
No 207
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=9.1e-10 Score=128.01 Aligned_cols=232 Identities=16% Similarity=0.167 Sum_probs=135.0
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCC-CC-C------C
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP-TC-P------D 159 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~-~~-~------~ 159 (765)
+++..|++|+||+.++..|.-........| +||+||+|||||++|+.+++.+ +|.. .+ | .
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L-----------~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV-----------NCQRMIDDPVYLQEVT 78 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh-----------CCCCcCCccccccccC
Confidence 567789999999999998854444434444 9999999999999999999876 3421 10 1 1
Q ss_pred cccc---cccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccC
Q 004256 160 EWED---GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL 236 (765)
Q Consensus 160 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L 236 (765)
..|. .|...... ....|+.+..... .|--++ +.+. ......| ..+..-+++|||++.|
T Consensus 79 ~~Cg~C~sC~~~~~g----------~~~n~~~~d~~s~----~~vd~I-r~l~-e~~~~~P---~~~~~KVvIIdEad~L 139 (620)
T PRK14954 79 EPCGECESCRDFDAG----------TSLNISEFDAASN----NSVDDI-RQLR-ENVRYGP---QKGRYRVYIIDEVHML 139 (620)
T ss_pred CCCccCHHHHHHhcc----------CCCCeEEeccccc----CCHHHH-HHHH-HHHHhhh---hcCCCEEEEEeChhhc
Confidence 2343 44332211 1233444432110 110000 0000 0000111 1234569999999999
Q ss_pred CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHH
Q 004256 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (765)
Q Consensus 237 ~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~ 316 (765)
....++.|+..|++-. ..+++|.+++ +...+.+.|..|..++ ++. +...++ |......
T Consensus 140 t~~a~naLLK~LEePp-------------~~tv~IL~t~-~~~kLl~TI~SRc~~v-ef~-~l~~~e---i~~~L~~--- 197 (620)
T PRK14954 140 STAAFNAFLKTLEEPP-------------PHAIFIFATT-ELHKIPATIASRCQRF-NFK-RIPLDE---IQSQLQM--- 197 (620)
T ss_pred CHHHHHHHHHHHhCCC-------------CCeEEEEEeC-ChhhhhHHHHhhceEE-ecC-CCCHHH---HHHHHHH---
Confidence 9999999999998732 2345555554 3356777888888554 565 333332 3221111
Q ss_pred hhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH-cCCCCCCHHHH
Q 004256 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL-EGREKVNVDDL 395 (765)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l-~gr~~Vt~edv 395 (765)
++.. .++.++++++++|+..+. . +.|..+..+.....++.- .....|+.++|
T Consensus 198 -------------------i~~~----egi~I~~eal~~La~~s~---G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V 250 (620)
T PRK14954 198 -------------------ICRA----EGIQIDADALQLIARKAQ---G-SMRDAQSILDQVIAFSVGSEAEKVIAYQGV 250 (620)
T ss_pred -------------------HHHH----cCCCCCHHHHHHHHHHhC---C-CHHHHHHHHHHHHHhccccccCCccCHHHH
Confidence 1111 257899999999887662 2 578887777654433311 12457888888
Q ss_pred HHHH
Q 004256 396 KKAV 399 (765)
Q Consensus 396 ~~A~ 399 (765)
.+.+
T Consensus 251 ~~lv 254 (620)
T PRK14954 251 AELL 254 (620)
T ss_pred HHHH
Confidence 6654
No 208
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3.7e-10 Score=127.17 Aligned_cols=205 Identities=21% Similarity=0.294 Sum_probs=130.6
Q ss_pred ceeechHHHHHH-HHhhh---cCCCCc--EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccc
Q 004256 96 AVVGQDAIKTAL-LLGAI---DREIGG--IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (765)
Q Consensus 96 ~ivG~~~~~~aL-~l~~~---~~~~~~--VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (765)
+-.|.+++|..+ ..-++ ..+..| ++|+||||+|||+++|+|+..+.|
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR--------------------------- 464 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR--------------------------- 464 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC---------------------------
Confidence 457888888887 23333 222222 889999999999999999999864
Q ss_pred cccccCcccccccCCCeEeCCCC--CcccceeeecccccccccCCCcccCCceeec------cCCeEeccccccCCHHH-
Q 004256 170 EYDTAGNLKTQIARSPFVQIPLG--VTEDRLIGSVDVEESVKTGTTVFQPGLLAEA------HRGVLYIDEINLLDEGI- 240 (765)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~l~~~--~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A------~~GiL~lDEi~~L~~~~- 240 (765)
.|..+..+ ....++-|| +--+-| .-||.+-++ ++-+++||||+.+....
T Consensus 465 ---------------kFfRfSvGG~tDvAeIkGH----RRTYVG---AMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~q 522 (906)
T KOG2004|consen 465 ---------------KFFRFSVGGMTDVAEIKGH----RRTYVG---AMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQ 522 (906)
T ss_pred ---------------ceEEEeccccccHHhhccc----ceeeec---cCChHHHHHHHhhCCCCceEEeehhhhhCCCCC
Confidence 34443333 223344454 111112 246666554 57799999999996533
Q ss_pred ---HHHHHHHHHcCceEEEeCCeeEEee---CceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHH
Q 004256 241 ---SNLLLNVLTEGVNIVEREGISFKHP---CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (765)
Q Consensus 241 ---q~~Ll~~l~~~~~~v~r~G~~~~~p---~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~ 314 (765)
..+||++|+-..|.-.- .....+| ..+.+|||.| .-..++++|+||+.++ ++. -+..+++..|.+. +.
T Consensus 523 GDPasALLElLDPEQNanFl-DHYLdVp~DLSkVLFicTAN-~idtIP~pLlDRMEvI-els-GYv~eEKv~IA~~--yL 596 (906)
T KOG2004|consen 523 GDPASALLELLDPEQNANFL-DHYLDVPVDLSKVLFICTAN-VIDTIPPPLLDRMEVI-ELS-GYVAEEKVKIAER--YL 596 (906)
T ss_pred CChHHHHHHhcChhhccchh-hhccccccchhheEEEEecc-ccccCChhhhhhhhee-ecc-CccHHHHHHHHHH--hh
Confidence 37889988754432110 0111123 3688999999 6677899999999886 676 3788888888763 11
Q ss_pred HHhhHHHhccccccCcHHHHHHHHHhcc-cCCccCCHHHHHHHH-HHHHhCCCCCCChHHHHHH
Q 004256 315 QERSNEVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLV-MEALRGGCQGHRAELYAAR 376 (765)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~il~a~~~-~~nv~i~~~~l~~l~-~~a~~~g~~s~Ra~i~llr 376 (765)
+- +.+..+.. +.+|.++++++..|. +||++.|+ |.+..-+.
T Consensus 597 ip------------------~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGV---RnLqk~ie 639 (906)
T KOG2004|consen 597 IP------------------QALKDCGLKPEQVKISDDALLALIERYCREAGV---RNLQKQIE 639 (906)
T ss_pred hh------------------HHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhH---HHHHHHHH
Confidence 11 12223333 346899998876554 57888866 77665443
No 209
>PRK08727 hypothetical protein; Validated
Probab=99.09 E-value=1.2e-09 Score=113.14 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=88.4
Q ss_pred CeEeccccccCC--HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC---CcchHHHhhh--hcceeecCC
Q 004256 226 GVLYIDEINLLD--EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRI--AINLSADLP 298 (765)
Q Consensus 226 GiL~lDEi~~L~--~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg---~l~~~L~dRf--~~~v~i~~p 298 (765)
-+|+||||+.+. ...+..|++.++... + ....+|.|+|..+. .+.++|.+|| +..+.+. |
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~---~---------~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~-~ 161 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRAR---A---------AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLP-V 161 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHH---H---------cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEec-C
Confidence 489999999985 456677888776532 0 02346777775443 3469999998 4455565 5
Q ss_pred CCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 004256 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (765)
Q Consensus 299 ~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A 378 (765)
++.+.+.+|+.... .. ..+.++++++++|++.+. . +.|.++.++...
T Consensus 162 ~~~e~~~~iL~~~a-------------------------~~----~~l~l~~e~~~~La~~~~---r-d~r~~l~~L~~l 208 (233)
T PRK08727 162 LDDVARAAVLRERA-------------------------QR----RGLALDEAAIDWLLTHGE---R-ELAGLVALLDRL 208 (233)
T ss_pred CCHHHHHHHHHHHH-------------------------HH----cCCCCCHHHHHHHHHhCC---C-CHHHHHHHHHHH
Confidence 67777777765310 11 158899999999987754 2 578898888877
Q ss_pred HHHHHHcCCCCCCHHHHHHHHH
Q 004256 379 KCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 379 ~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
-..+...++ .||.+.+++++.
T Consensus 209 ~~~~~~~~~-~it~~~~~~~l~ 229 (233)
T PRK08727 209 DRESLAAKR-RVTVPFLRRVLE 229 (233)
T ss_pred HHHHHHhCC-CCCHHHHHHHHh
Confidence 665665565 799999998875
No 210
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.09 E-value=2.8e-10 Score=121.61 Aligned_cols=138 Identities=18% Similarity=0.149 Sum_probs=92.4
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCcc
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e 195 (765)
..+++|+||||||||++|++|+..+. .+|+.+..+..+
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg------------------------------------------~~~i~vsa~eL~ 185 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMG------------------------------------------IEPIVMSAGELE 185 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcC------------------------------------------CCeEEEEHHHhh
Confidence 35699999999999999999999763 467777777666
Q ss_pred cceeeecccccccccCCCcccCCceeec--------cCCeEeccccccCCH-----------HH-HHHHHHHHHcCceEE
Q 004256 196 DRLIGSVDVEESVKTGTTVFQPGLLAEA--------HRGVLYIDEINLLDE-----------GI-SNLLLNVLTEGVNIV 255 (765)
Q Consensus 196 ~~L~G~~d~e~~~~~g~~~~~~Gll~~A--------~~GiL~lDEi~~L~~-----------~~-q~~Ll~~l~~~~~~v 255 (765)
+.++|.- |+.+ ..++..| ...|||||||+.+-. .+ ...|+..|+. -..+
T Consensus 186 sk~vGEs--Ek~I--------R~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~-p~~v 254 (413)
T PLN00020 186 SENAGEP--GKLI--------RQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADN-PTNV 254 (413)
T ss_pred cCcCCcH--HHHH--------HHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcC-Cccc
Confidence 6777731 1111 1122222 246999999997632 12 2466676653 1112
Q ss_pred EeCCe--eEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCCHhhHHHHHHH
Q 004256 256 EREGI--SFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFEDRVAAVGI 310 (765)
Q Consensus 256 ~r~G~--~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~~e~r~dI~~l 310 (765)
+-.|. ......++.||+|+| ....+.++|+. ||+..+ . .|+.+.|.+|+..
T Consensus 255 ~l~G~w~~~~~~~~V~VIaTTN-rpd~LDpALlRpGRfDk~i--~-lPd~e~R~eIL~~ 309 (413)
T PLN00020 255 SLGGDWREKEEIPRVPIIVTGN-DFSTLYAPLIRDGRMEKFY--W-APTREDRIGVVHG 309 (413)
T ss_pred cccccccccccCCCceEEEeCC-CcccCCHhHcCCCCCCcee--C-CCCHHHHHHHHHH
Confidence 22222 112334688999999 88889999999 999864 3 3689999999874
No 211
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.08 E-value=6.6e-10 Score=122.79 Aligned_cols=161 Identities=20% Similarity=0.214 Sum_probs=103.7
Q ss_pred CCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccc
Q 004256 94 LAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDT 173 (765)
Q Consensus 94 f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (765)
++++++.+.....+..+.. ...+|+|+|+||||||++|+.++..+..-..
T Consensus 174 l~d~~i~e~~le~l~~~L~--~~~~iil~GppGtGKT~lA~~la~~l~~~~~---------------------------- 223 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--IKKNIILQGPPGVGKTFVARRLAYLLTGEKA---------------------------- 223 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHhcCCcc----------------------------
Confidence 4566777776666644433 4689999999999999999999987642000
Q ss_pred cCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCce----eec-----cCCeEeccccccCCHH-HHHH
Q 004256 174 AGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLL----AEA-----HRGVLYIDEINLLDEG-ISNL 243 (765)
Q Consensus 174 ~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll----~~A-----~~GiL~lDEi~~L~~~-~q~~ 243 (765)
.....++..+...+..++++++... .......+|.+ ..| ++.+|||||||+.+.. +...
T Consensus 224 -------~~~v~~VtFHpsySYeDFI~G~rP~----~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGe 292 (459)
T PRK11331 224 -------PQRVNMVQFHQSYSYEDFIQGYRPN----GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGE 292 (459)
T ss_pred -------cceeeEEeecccccHHHHhcccCCC----CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhh
Confidence 0122344455555555555433111 11223345543 122 3569999999999955 5788
Q ss_pred HHHHHHcCc------eEE---EeCCeeEEeeCceEEEEeecCCC---CCcchHHHhhhhcceeec
Q 004256 244 LLNVLTEGV------NIV---EREGISFKHPCKPLLIATYNPEE---GVVREHLLDRIAINLSAD 296 (765)
Q Consensus 244 Ll~~l~~~~------~~v---~r~G~~~~~p~~~~lIat~N~~e---g~l~~~L~dRf~~~v~i~ 296 (765)
|+.+|+.+. +.+ +..+.....|.++.+|||||..+ ..++.+|.+||..+ ++.
T Consensus 293 l~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi-~i~ 356 (459)
T PRK11331 293 VMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFI-DIE 356 (459)
T ss_pred hhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhheE-Eec
Confidence 888888541 111 11234567899999999999854 25889999999775 676
No 212
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.08 E-value=4e-10 Score=137.27 Aligned_cols=159 Identities=23% Similarity=0.275 Sum_probs=99.5
Q ss_pred CCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccc
Q 004256 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (765)
-.++.++|++..++.+..........+++|+||||||||++++.++..+..- ..|+
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~------------~~p~------------ 225 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNG------------DVPE------------ 225 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcc------------CCch------------
Confidence 3567899999988888544444567889999999999999999999876420 0000
Q ss_pred cccCcccccccCCCeEeCCCCCcc--cceeeecccccccccCCCcccCCceeec----cCCeEeccccccCCH-------
Q 004256 172 DTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLLDE------- 238 (765)
Q Consensus 172 ~~~~~~~~~~~~~~~v~l~~~~~e--~~L~G~~d~e~~~~~g~~~~~~Gll~~A----~~GiL~lDEi~~L~~------- 238 (765)
.....+++.+..+... ....|.. ++ ....++... .+.|||||||+.|..
T Consensus 226 --------~l~~~~~~~l~~~~l~a~~~~~g~~--e~--------~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~ 287 (852)
T TIGR03346 226 --------SLKNKRLLALDMGALIAGAKYRGEF--EE--------RLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA 287 (852)
T ss_pred --------hhcCCeEEEeeHHHHhhcchhhhhH--HH--------HHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch
Confidence 0023344444322110 0111100 00 001122221 245999999998852
Q ss_pred -HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC----CcchHHHhhhhcceeecCCCCHhhHHHHHH
Q 004256 239 -GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVG 309 (765)
Q Consensus 239 -~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg----~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~ 309 (765)
+.++.|...++.|. +.+|++||.++. +++++|.+||..+ .+..| +.+....|+.
T Consensus 288 ~d~~~~Lk~~l~~g~---------------i~~IgaTt~~e~r~~~~~d~al~rRf~~i-~v~~p-~~~~~~~iL~ 346 (852)
T TIGR03346 288 MDAGNMLKPALARGE---------------LHCIGATTLDEYRKYIEKDAALERRFQPV-FVDEP-TVEDTISILR 346 (852)
T ss_pred hHHHHHhchhhhcCc---------------eEEEEeCcHHHHHHHhhcCHHHHhcCCEE-EeCCC-CHHHHHHHHH
Confidence 45677777666654 688999998764 4689999999864 67744 6776666654
No 213
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.08 E-value=1.7e-09 Score=115.47 Aligned_cols=107 Identities=26% Similarity=0.356 Sum_probs=74.9
Q ss_pred CCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCC-----------CCCcchHHHhhhhcce
Q 004256 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-----------EGVVREHLLDRIAINL 293 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~-----------eg~l~~~L~dRf~~~v 293 (765)
.|||||||++.|+.+....|-++|+..- .-++|.+||.. +.-++.+|+||+-++
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~--------------sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII- 343 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESEL--------------SPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLII- 343 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT----------------EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEE-
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCC--------------CcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEE-
Confidence 5899999999999999999999999765 23677778862 234667999999654
Q ss_pred eecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHH
Q 004256 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELY 373 (765)
Q Consensus 294 ~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~ 373 (765)
.+. |+..++-.+|+.+.-. -.+|.++++++++|+.+..+. |.|..++
T Consensus 344 ~t~-py~~~ei~~Il~iR~~-----------------------------~E~v~i~~~al~~L~~ig~~~---SLRYAiq 390 (398)
T PF06068_consen 344 RTK-PYSEEEIKQILKIRAK-----------------------------EEDVEISEDALDLLTKIGVET---SLRYAIQ 390 (398)
T ss_dssp EE-----HHHHHHHHHHHHH-----------------------------HCT--B-HHHHHHHHHHHHHS----HHHHHH
T ss_pred ECC-CCCHHHHHHHHHhhhh-----------------------------hhcCcCCHHHHHHHHHHhhhc---cHHHHHH
Confidence 565 8888887777664321 247999999999999999888 6699999
Q ss_pred HHHHHH
Q 004256 374 AARVAK 379 (765)
Q Consensus 374 llr~A~ 379 (765)
++..|.
T Consensus 391 Li~~a~ 396 (398)
T PF06068_consen 391 LITPAS 396 (398)
T ss_dssp CHHHHH
T ss_pred hhhhhh
Confidence 988765
No 214
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.06 E-value=4.2e-10 Score=135.49 Aligned_cols=155 Identities=18% Similarity=0.223 Sum_probs=99.9
Q ss_pred CCCCCCceeechHHHHHHHHhhh-------------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALLLGAI-------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~~-------------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
..+.|++|.|.+..+..+.-... -....+|||+||||||||++|++|+..+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--------------- 237 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--------------- 237 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC---------------
Confidence 34678999999998887721110 02246799999999999999999998764
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEecccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi 233 (765)
.+|+.+.+........|.. +. ....++..+ ...+||||||
T Consensus 238 ---------------------------~~~i~i~~~~i~~~~~g~~--~~--------~l~~lf~~a~~~~p~il~iDEi 280 (733)
T TIGR01243 238 ---------------------------AYFISINGPEIMSKYYGES--EE--------RLREIFKEAEENAPSIIFIDEI 280 (733)
T ss_pred ---------------------------CeEEEEecHHHhcccccHH--HH--------HHHHHHHHHHhcCCcEEEeehh
Confidence 2344443322222222210 00 001122222 2469999999
Q ss_pred ccCC-----------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCC
Q 004256 234 NLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMT 300 (765)
Q Consensus 234 ~~L~-----------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~ 300 (765)
+.+. ..+++.|+..|+.-. ....+++|+++| ....++++|.. ||+..+.+..| +
T Consensus 281 d~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~-----------~~~~vivI~atn-~~~~ld~al~r~gRfd~~i~i~~P-~ 347 (733)
T TIGR01243 281 DAIAPKREEVTGEVEKRVVAQLLTLMDGLK-----------GRGRVIVIGATN-RPDALDPALRRPGRFDREIVIRVP-D 347 (733)
T ss_pred hhhcccccCCcchHHHHHHHHHHHHhhccc-----------cCCCEEEEeecC-ChhhcCHHHhCchhccEEEEeCCc-C
Confidence 8763 357788888886421 113578899999 44567888876 89988888854 7
Q ss_pred HhhHHHHHH
Q 004256 301 FEDRVAAVG 309 (765)
Q Consensus 301 ~e~r~dI~~ 309 (765)
.+.|.+|+.
T Consensus 348 ~~~R~~Il~ 356 (733)
T TIGR01243 348 KRARKEILK 356 (733)
T ss_pred HHHHHHHHH
Confidence 777888876
No 215
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.06 E-value=1.5e-09 Score=119.13 Aligned_cols=157 Identities=23% Similarity=0.205 Sum_probs=114.4
Q ss_pred chhhhhhhccCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEE-EcCCCccHHHHHHHhh
Q 004256 550 DMRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEV-LLPPSRSIAMARKRLE 628 (765)
Q Consensus 550 dl~~~~~~~~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~-~~p~t~~~~~~~~~l~ 628 (765)
.|..++...+..-.+++|||.||||.|.+..-||..+++++..++..+-++.++.|++...+. +.++..+...+.+.|.
T Consensus 261 kLl~Yr~~gk~~GpvilllD~SGSM~G~~e~~AKAvalAl~~~alaenR~~~~~lF~s~~~~~el~~k~~~~~e~i~fL~ 340 (437)
T COG2425 261 KLLTYRLQGKSEGPVILLLDKSGSMSGFKEQWAKAVALALMRIALAENRDCYVILFDSEVIEYELYEKKIDIEELIEFLS 340 (437)
T ss_pred cchhhhhhcCCCCCEEEEEeCCCCcCCcHHHHHHHHHHHHHHHHHHhccceEEEEecccceeeeecCCccCHHHHHHHHh
Confidence 344455555556889999999999999999999999999999899888899999999852222 4555568899999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHH
Q 004256 629 RLPCGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIY 708 (765)
Q Consensus 629 ~l~~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 708 (765)
...+|| |++..+|..|++.+.+....+ .-||+||||.+-.. ++++.....++
T Consensus 341 ~~f~GG-TD~~~~l~~al~~~k~~~~~~----adiv~ITDg~~~~~-----------------------~~~~~~v~e~~ 392 (437)
T COG2425 341 YVFGGG-TDITKALRSALEDLKSRELFK----ADIVVITDGEDERL-----------------------DDFLRKVKELK 392 (437)
T ss_pred hhcCCC-CChHHHHHHHHHHhhcccccC----CCEEEEeccHhhhh-----------------------hHHHHHHHHHH
Confidence 988887 999999999999988654333 24799999996431 23333333333
Q ss_pred -hCCCEEEEEeCCCCCCCHHHHHHHHHHc
Q 004256 709 -KAGMSLLVIDTENKFVSTGFAKEIARVA 736 (765)
Q Consensus 709 -~~gi~~~vig~~~~~~~~~~l~~LA~~~ 736 (765)
....+++.|-++.. +...+.+|++..
T Consensus 393 k~~~~rl~aV~I~~~--~~~~l~~Isd~~ 419 (437)
T COG2425 393 KRRNARLHAVLIGGY--GKPGLMRISDHI 419 (437)
T ss_pred HHhhceEEEEEecCC--CCcccceeeeee
Confidence 45556665555542 234566776655
No 216
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.6e-10 Score=129.38 Aligned_cols=157 Identities=22% Similarity=0.279 Sum_probs=104.5
Q ss_pred CCCCCceeechHHHHHHH----H-----hhhc---CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCC
Q 004256 91 FFPLAAVVGQDAIKTALL----L-----GAID---REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~----l-----~~~~---~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~ 158 (765)
...|++|-|-+.+|..++ + ..+. ....|||||||||||||.+|++++-...
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs----------------- 730 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS----------------- 730 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-----------------
Confidence 456899999999999873 1 1121 1246799999999999999999997542
Q ss_pred CcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCcee---eccCCeEecccccc
Q 004256 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYIDEINL 235 (765)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~---~A~~GiL~lDEi~~ 235 (765)
..|..+-....-...+|.- |+ ...-.++ .|...|+|+||++.
T Consensus 731 -------------------------L~FlSVKGPELLNMYVGqS--E~--------NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 731 -------------------------LNFLSVKGPELLNMYVGQS--EE--------NVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred -------------------------eeEEeecCHHHHHHHhcch--HH--------HHHHHHHHhhccCCeEEEeccccc
Confidence 2333322222222344420 00 0111222 34567999999999
Q ss_pred CCH-------------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCC
Q 004256 236 LDE-------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMT 300 (765)
Q Consensus 236 L~~-------------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~ 300 (765)
|.+ .++..||.-|+. .+..-..++.|||+|| .+..++|+|+. ||+-.|.+..+.+
T Consensus 776 lAP~RG~sGDSGGVMDRVVSQLLAELDg---------ls~~~s~~VFViGATN-RPDLLDpALLRPGRFDKLvyvG~~~d 845 (953)
T KOG0736|consen 776 LAPNRGRSGDSGGVMDRVVSQLLAELDG---------LSDSSSQDVFVIGATN-RPDLLDPALLRPGRFDKLVYVGPNED 845 (953)
T ss_pred cCccCCCCCCccccHHHHHHHHHHHhhc---------ccCCCCCceEEEecCC-CccccChhhcCCCccceeEEecCCcc
Confidence 865 577888887753 2222234688999999 66677777775 9999999998778
Q ss_pred HhhHHHHHH
Q 004256 301 FEDRVAAVG 309 (765)
Q Consensus 301 ~e~r~dI~~ 309 (765)
.+.+..|++
T Consensus 846 ~esk~~vL~ 854 (953)
T KOG0736|consen 846 AESKLRVLE 854 (953)
T ss_pred HHHHHHHHH
Confidence 887777765
No 217
>PRK06620 hypothetical protein; Validated
Probab=99.05 E-value=9.7e-09 Score=104.91 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=79.3
Q ss_pred CeEeccccccCCHHHHHHHHHHH-HcCceEEEeCCeeEEeeCceEEEEeecC-CCCCcchHHHhhhhc--ceeecCCCCH
Q 004256 226 GVLYIDEINLLDEGISNLLLNVL-TEGVNIVEREGISFKHPCKPLLIATYNP-EEGVVREHLLDRIAI--NLSADLPMTF 301 (765)
Q Consensus 226 GiL~lDEi~~L~~~~q~~Ll~~l-~~~~~~v~r~G~~~~~p~~~~lIat~N~-~eg~l~~~L~dRf~~--~v~i~~p~~~ 301 (765)
.+|+||||+.+.....-.+++.+ +.|. .+||+++.+ .+-.+ ++|..||.- ++.+. |++.
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~e~g~---------------~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~-~pd~ 149 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIINEKQK---------------YLLLTSSDKSRNFTL-PDLSSRIKSVLSILLN-SPDD 149 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHHhcCC---------------EEEEEcCCCccccch-HHHHHHHhCCceEeeC-CCCH
Confidence 48999999987543333333333 3333 345555543 32246 899999972 34666 5566
Q ss_pred hhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Q 004256 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (765)
Q Consensus 302 e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~ 381 (765)
+.+..++... ... ..+.++++++++|+..+.+ +.|.++.++....+.
T Consensus 150 ~~~~~~l~k~-------------------------~~~----~~l~l~~ev~~~L~~~~~~----d~r~l~~~l~~l~~~ 196 (214)
T PRK06620 150 ELIKILIFKH-------------------------FSI----SSVTISRQIIDFLLVNLPR----EYSKIIEILENINYF 196 (214)
T ss_pred HHHHHHHHHH-------------------------HHH----cCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHHHH
Confidence 6665554421 111 2478999999999877633 578999988886655
Q ss_pred HHHcCCCCCCHHHHHHHH
Q 004256 382 AALEGREKVNVDDLKKAV 399 (765)
Q Consensus 382 A~l~gr~~Vt~edv~~A~ 399 (765)
+...+ ..||.+.+++++
T Consensus 197 ~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 197 ALISK-RKITISLVKEVL 213 (214)
T ss_pred HHHcC-CCCCHHHHHHHh
Confidence 55555 479999988875
No 218
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.04 E-value=6.7e-10 Score=104.84 Aligned_cols=147 Identities=25% Similarity=0.240 Sum_probs=90.5
Q ss_pred echHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCccc
Q 004256 99 GQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLK 178 (765)
Q Consensus 99 G~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (765)
|++.....+......+...+++|+|++|||||++++.++..+..
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~------------------------------------ 45 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR------------------------------------ 45 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc------------------------------------
Confidence 56666777755544445678999999999999999999988642
Q ss_pred ccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEEEeC
Q 004256 179 TQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVERE 258 (765)
Q Consensus 179 ~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~ 258 (765)
...+++.+++........... .................+.++|+|||++.++...+..++..++......
T Consensus 46 ---~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~--- 115 (151)
T cd00009 46 ---PGAPFLYLNASDLLEGLVVAE----LFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR--- 115 (151)
T ss_pred ---CCCCeEEEehhhhhhhhHHHH----HhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee---
Confidence 122333332221111110000 0000000001122233457899999999998888899999998764211
Q ss_pred CeeEEeeCceEEEEeecCCCC-CcchHHHhhhhcceee
Q 004256 259 GISFKHPCKPLLIATYNPEEG-VVREHLLDRIAINLSA 295 (765)
Q Consensus 259 G~~~~~p~~~~lIat~N~~eg-~l~~~L~dRf~~~v~i 295 (765)
..+.++.+|+++|+... .+.+.+.+||+..+.+
T Consensus 116 ----~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~ 149 (151)
T cd00009 116 ----IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVI 149 (151)
T ss_pred ----ccCCCeEEEEecCccccCCcChhHHhhhccEeec
Confidence 12346788999887654 7888999999855433
No 219
>PRK04195 replication factor C large subunit; Provisional
Probab=99.04 E-value=2.6e-09 Score=122.56 Aligned_cols=202 Identities=18% Similarity=0.234 Sum_probs=120.3
Q ss_pred cCCCCCCCceeechHHHHHHH--HhhhcC--CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccc
Q 004256 88 GRQFFPLAAVVGQDAIKTALL--LGAIDR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~--l~~~~~--~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 163 (765)
+++|-.|++|+|++.++..|. +..... ...++||+||||||||++|++|++.+..
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~--------------------- 65 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGW--------------------- 65 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCC---------------------
Confidence 356677899999999998883 222211 1467999999999999999999997641
Q ss_pred cccccccccccCcccccccCCCeEeCCCCCcc-----cceeeecccccccccCCCcccCCceeeccCCeEeccccccCCH
Q 004256 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE-----DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE 238 (765)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e-----~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~ 238 (765)
+++.++.+-.. ..+++.. . ....++ .....+|+|||++.|..
T Consensus 66 ---------------------~~ielnasd~r~~~~i~~~i~~~-----~------~~~sl~-~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 66 ---------------------EVIELNASDQRTADVIERVAGEA-----A------TSGSLF-GARRKLILLDEVDGIHG 112 (482)
T ss_pred ---------------------CEEEEcccccccHHHHHHHHHHh-----h------ccCccc-CCCCeEEEEecCccccc
Confidence 12222221100 0111100 0 000011 02456999999999976
Q ss_pred ----HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcch-HHHhhhhcceeecCCCCHhhHHHHHHHHHH
Q 004256 239 ----GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVRE-HLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (765)
Q Consensus 239 ----~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~-~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~ 313 (765)
..+..|++.++... ..+|.++| +...+.. .|..|+. .|.+. |+..+....++. .
T Consensus 113 ~~d~~~~~aL~~~l~~~~---------------~~iIli~n-~~~~~~~k~Lrsr~~-~I~f~-~~~~~~i~~~L~---~ 171 (482)
T PRK04195 113 NEDRGGARAILELIKKAK---------------QPIILTAN-DPYDPSLRELRNACL-MIEFK-RLSTRSIVPVLK---R 171 (482)
T ss_pred ccchhHHHHHHHHHHcCC---------------CCEEEecc-CccccchhhHhccce-EEEec-CCCHHHHHHHHH---H
Confidence 66888999887533 23455566 3334444 5666553 34565 334443322222 1
Q ss_pred HHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHH
Q 004256 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVD 393 (765)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~e 393 (765)
++.. .++.+++++++.|++.+ +. ..|..++.+.. ...|...|+.+
T Consensus 172 ----------------------i~~~----egi~i~~eaL~~Ia~~s---~G-DlR~ain~Lq~-----~a~~~~~it~~ 216 (482)
T PRK04195 172 ----------------------ICRK----EGIECDDEALKEIAERS---GG-DLRSAINDLQA-----IAEGYGKLTLE 216 (482)
T ss_pred ----------------------HHHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHH-----HhcCCCCCcHH
Confidence 1111 25788999999887654 33 57888877765 23466789999
Q ss_pred HHHHHH
Q 004256 394 DLKKAV 399 (765)
Q Consensus 394 dv~~A~ 399 (765)
++....
T Consensus 217 ~v~~~~ 222 (482)
T PRK04195 217 DVKTLG 222 (482)
T ss_pred HHHHhh
Confidence 987654
No 220
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.04 E-value=8.6e-10 Score=133.88 Aligned_cols=211 Identities=19% Similarity=0.196 Sum_probs=128.0
Q ss_pred CCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccc
Q 004256 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (765)
-.++.++|++..++.+.-........+++|+||||||||++|+.|+..+..- .+
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~-~v------------------------- 228 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIING-EV------------------------- 228 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcC-CC-------------------------
Confidence 4567899999988777433334456789999999999999999999976420 00
Q ss_pred cccCcccccccCCCeEeCCCCCcc--cceeeecccccccccCCCcccCCceee---c-cCCeEeccccccCCH-------
Q 004256 172 DTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAE---A-HRGVLYIDEINLLDE------- 238 (765)
Q Consensus 172 ~~~~~~~~~~~~~~~v~l~~~~~e--~~L~G~~d~e~~~~~g~~~~~~Gll~~---A-~~GiL~lDEi~~L~~------- 238 (765)
+......+++.+..+... ....|.+ ++ ....++.. . ...|||||||+.|..
T Consensus 229 ------p~~l~~~~~~~l~l~~l~ag~~~~g~~--e~--------~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~ 292 (857)
T PRK10865 229 ------PEGLKGRRVLALDMGALVAGAKYRGEF--EE--------RLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA 292 (857)
T ss_pred ------chhhCCCEEEEEehhhhhhccchhhhh--HH--------HHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc
Confidence 001123445444333211 1111110 00 00112221 1 234999999999853
Q ss_pred -HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC----CcchHHHhhhhcceeecCCCCHhhHHHHHHHHHH
Q 004256 239 -GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (765)
Q Consensus 239 -~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg----~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~ 313 (765)
+.++.|..+++.|. +++||+|++++. +++++|.+||..+ .+..| +.+.+..|+.-..
T Consensus 293 ~d~~~~lkp~l~~g~---------------l~~IgaTt~~e~r~~~~~d~al~rRf~~i-~v~eP-~~~~~~~iL~~l~- 354 (857)
T PRK10865 293 MDAGNMLKPALARGE---------------LHCVGATTLDEYRQYIEKDAALERRFQKV-FVAEP-SVEDTIAILRGLK- 354 (857)
T ss_pred hhHHHHhcchhhcCC---------------CeEEEcCCCHHHHHHhhhcHHHHhhCCEE-EeCCC-CHHHHHHHHHHHh-
Confidence 36788888887775 689999998874 5789999999864 57754 6677666664322
Q ss_pred HHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCC
Q 004256 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC 365 (765)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~ 365 (765)
..+...+ ........+...+...+.+..+-.+++.+++.+-..|....+
T Consensus 355 --~~~e~~~-~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl 403 (857)
T PRK10865 355 --ERYELHH-HVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRM 403 (857)
T ss_pred --hhhccCC-CCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhccccc
Confidence 1111111 111122233333345566667788999998887777665543
No 221
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=3.5e-09 Score=123.85 Aligned_cols=167 Identities=23% Similarity=0.243 Sum_probs=96.7
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCC-CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCC-CCCCccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP-TCPDEWEDGLD 166 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~-~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ 166 (765)
.++-.|.+|+||+.++..|.-...... ...+||+||+|||||++|+++++.+. |.....+ ..|-.-|+.|+
T Consensus 10 yRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~-------c~~~~~~~~~~Cg~C~~C~ 82 (620)
T PRK14948 10 YRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN-------CLNSDKPTPEPCGKCELCR 82 (620)
T ss_pred hCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc-------CCCcCCCCCCCCcccHHHH
Confidence 456678999999999998844333322 35699999999999999999999874 2100000 01111244444
Q ss_pred ccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHH
Q 004256 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (765)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~ 246 (765)
..... ....++.+.... -.|--.+ +.+... ....| ..+...|+||||++.|+...++.||.
T Consensus 83 ~i~~g----------~h~D~~ei~~~~----~~~vd~I-Reii~~-a~~~p---~~~~~KViIIDEad~Lt~~a~naLLK 143 (620)
T PRK14948 83 AIAAG----------NALDVIEIDAAS----NTGVDNI-RELIER-AQFAP---VQARWKVYVIDECHMLSTAAFNALLK 143 (620)
T ss_pred HHhcC----------CCccEEEEeccc----cCCHHHH-HHHHHH-HhhCh---hcCCceEEEEECccccCHHHHHHHHH
Confidence 42211 011232222110 0000000 000000 00111 12345699999999999999999999
Q ss_pred HHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeec
Q 004256 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (765)
Q Consensus 247 ~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~ 296 (765)
.|++- |..+++|.+++ +...+.+.|.+|+..+ ++.
T Consensus 144 ~LEeP-------------p~~tvfIL~t~-~~~~llpTIrSRc~~~-~f~ 178 (620)
T PRK14948 144 TLEEP-------------PPRVVFVLATT-DPQRVLPTIISRCQRF-DFR 178 (620)
T ss_pred HHhcC-------------CcCeEEEEEeC-ChhhhhHHHHhheeEE-Eec
Confidence 99963 23456666665 4445778899998664 555
No 222
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=99.03 E-value=1.9e-08 Score=99.53 Aligned_cols=164 Identities=18% Similarity=0.230 Sum_probs=108.0
Q ss_pred ceEEEEEeCCCCCCc----hhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcC-------
Q 004256 562 ALVIFVVDASGSMAL----NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERL------- 630 (765)
Q Consensus 562 ~~vv~vvD~SgSM~~----~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l------- 630 (765)
..|++|||.||||.. ...+.+.+-++.+.. .+.+...+-++.|+++ ...+-+.|. .....+++.+
T Consensus 2 ArV~LVLD~SGSM~~~yk~G~vQ~~~Er~lalA~-~~DdDG~i~v~~Fs~~-~~~~~~vt~--~~~~~~v~~~~~~~~~~ 77 (200)
T PF10138_consen 2 ARVYLVLDISGSMRPLYKDGTVQRVVERILALAA-QFDDDGEIDVWFFSTE-FDRLPDVTL--DNYEGYVDELHAGLPDW 77 (200)
T ss_pred cEEEEEEeCCCCCchhhhCccHHHHHHHHHHHHh-hcCCCCceEEEEeCCC-CCcCCCcCH--HHHHHHHHHHhcccccc
Confidence 468999999999974 244444444444443 3556667999999988 555444443 2333333333
Q ss_pred CCCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhC
Q 004256 631 PCGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKA 710 (765)
Q Consensus 631 ~~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 710 (765)
...|+|+...+|+.+.+......... ...+|+++|||.++. ..++.++.......
T Consensus 78 ~~~G~t~y~~vm~~v~~~y~~~~~~~--~P~~VlFiTDG~~~~-----------------------~~~~~~~i~~as~~ 132 (200)
T PF10138_consen 78 GRMGGTNYAPVMEDVLDHYFKREPSD--APALVLFITDGGPDD-----------------------RRAIEKLIREASDE 132 (200)
T ss_pred CCCCCcchHHHHHHHHHHHhhcCCCC--CCeEEEEEecCCccc-----------------------hHHHHHHHHhccCC
Confidence 34488999999999877755332211 245889999999752 14556666666778
Q ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHc-----CCeEEEcCCC---ChHHHHHHHH
Q 004256 711 GMSLLVIDTENKFVSTGFAKEIARVA-----QGKYYYLPNA---SDAVISATTK 756 (765)
Q Consensus 711 gi~~~vig~~~~~~~~~~l~~LA~~~-----gG~y~~~~~~---~~~~l~~~~~ 756 (765)
.|..-.||+|.. +.++|++|.... ++.|+.+++. ++++|.+.+-
T Consensus 133 pifwqFVgiG~~--~f~fL~kLD~l~gR~vDNa~Ff~~~d~~~lsD~eLy~~LL 184 (200)
T PF10138_consen 133 PIFWQFVGIGDS--NFGFLEKLDDLAGRVVDNAGFFAIDDIDELSDEELYDRLL 184 (200)
T ss_pred CeeEEEEEecCC--cchHHHHhhccCCcccCCcCeEecCCcccCCHHHHHHHHH
Confidence 888889999976 478999998831 3447787755 4666655443
No 223
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.02 E-value=5e-09 Score=118.62 Aligned_cols=228 Identities=21% Similarity=0.187 Sum_probs=133.2
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCC-CcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCC-CCCCcccc---
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREI-GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP-TCPDEWED--- 163 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~-~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~--- 163 (765)
.+|-.|++|+||+.++..|.-....... +.+||+||+|+|||++|+.+++.+- |.. ......|.
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~-----------c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALN-----------CQNPTEDQEPCNQCA 79 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhc-----------CCCcccCCCCCcccH
Confidence 4667899999999999888544333333 4489999999999999999998763 321 11111232
Q ss_pred cccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
.|...... ....|+.+.... ..|.-++.. +. ....+.+ ..++..+++|||++.|....++.
T Consensus 80 ~C~~i~~~----------~~~d~~~i~g~~----~~gid~ir~-i~-~~l~~~~---~~~~~kvvIIdead~lt~~~~n~ 140 (451)
T PRK06305 80 SCKEISSG----------TSLDVLEIDGAS----HRGIEDIRQ-IN-ETVLFTP---SKSRYKIYIIDEVHMLTKEAFNS 140 (451)
T ss_pred HHHHHhcC----------CCCceEEeeccc----cCCHHHHHH-HH-HHHHhhh---hcCCCEEEEEecHHhhCHHHHHH
Confidence 22221100 111233332110 011000000 00 0000111 12456799999999999999999
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhc
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~ 323 (765)
|+..|++-. ..+++|.++| +...+.+.|.+|+..+ ++. +...++ |......
T Consensus 141 LLk~lEep~-------------~~~~~Il~t~-~~~kl~~tI~sRc~~v-~f~-~l~~~e---l~~~L~~---------- 191 (451)
T PRK06305 141 LLKTLEEPP-------------QHVKFFLATT-EIHKIPGTILSRCQKM-HLK-RIPEET---IIDKLAL---------- 191 (451)
T ss_pred HHHHhhcCC-------------CCceEEEEeC-ChHhcchHHHHhceEE-eCC-CCCHHH---HHHHHHH----------
Confidence 999998732 2456666665 4456778899999754 565 333333 3221111
Q ss_pred cccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004256 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 324 ~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
++.. .++.+++++++.|+..+ +. +.|.++..+..... +.+ ..|+.++|..++
T Consensus 192 ------------~~~~----eg~~i~~~al~~L~~~s---~g-dlr~a~~~Lekl~~---~~~-~~It~~~V~~l~ 243 (451)
T PRK06305 192 ------------IAKQ----EGIETSREALLPIARAA---QG-SLRDAESLYDYVVG---LFP-KSLDPDSVAKAL 243 (451)
T ss_pred ------------HHHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHH---hcc-CCcCHHHHHHHH
Confidence 1111 25789999998887665 22 56888887775433 234 459999887665
No 224
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=3.8e-10 Score=113.52 Aligned_cols=225 Identities=18% Similarity=0.242 Sum_probs=135.6
Q ss_pred CCCCceeechHHHHHH----HHhhhcC---------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCC
Q 004256 92 FPLAAVVGQDAIKTAL----LLGAIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL----~l~~~~~---------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~ 158 (765)
..+++|-|-.+.+..| .+-.+.| -..+||+|||||||||.+||++++.-
T Consensus 174 vty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt------------------ 235 (435)
T KOG0729|consen 174 VTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT------------------ 235 (435)
T ss_pred cccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc------------------
Confidence 3466777776655554 1212211 13569999999999999999999753
Q ss_pred CcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeecc---CCeEecccccc
Q 004256 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEINL 235 (765)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~---~GiL~lDEi~~ 235 (765)
+.-|+.+-.+......+| +|+. ...-+++.|. -.++|+|||+.
T Consensus 236 ------------------------dacfirvigselvqkyvg---------egar-mvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 236 ------------------------DACFIRVIGSELVQKYVG---------EGAR-MVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred ------------------------CceEEeehhHHHHHHHhh---------hhHH-HHHHHHHHhcccceEEEEeecccc
Confidence 334544222211122233 2332 1122444442 35999999987
Q ss_pred C-----------CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCCHh
Q 004256 236 L-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFE 302 (765)
Q Consensus 236 L-----------~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~~e 302 (765)
+ +.++|..+|+++..-.- +. -..++.++.+|| .+..|+|+|+. |++-.|++.+| +.+
T Consensus 282 iggarfddg~ggdnevqrtmleli~qldg-fd-------prgnikvlmatn-rpdtldpallrpgrldrkvef~lp-dle 351 (435)
T KOG0729|consen 282 IGGARFDDGAGGDNEVQRTMLELINQLDG-FD-------PRGNIKVLMATN-RPDTLDPALLRPGRLDRKVEFGLP-DLE 351 (435)
T ss_pred ccCccccCCCCCcHHHHHHHHHHHHhccC-CC-------CCCCeEEEeecC-CCCCcCHhhcCCcccccceeccCC-ccc
Confidence 6 34799999998864221 11 123567888888 67778888885 88888888876 555
Q ss_pred hHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHH-HHHHHHHHHhCCCCCCChHHHHHHHHHHH
Q 004256 303 DRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARVAKCL 381 (765)
Q Consensus 303 ~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~-l~~l~~~a~~~g~~s~Ra~i~llr~A~a~ 381 (765)
-|..|..+-.. ...+..++ .+.|+.+|-.. +.-....++--|.-.
T Consensus 352 grt~i~kihak-------------------------------smsverdir~ellarlcpns---tgaeirsvcteagmf 397 (435)
T KOG0729|consen 352 GRTHIFKIHAK-------------------------------SMSVERDIRFELLARLCPNS---TGAEIRSVCTEAGMF 397 (435)
T ss_pred ccceeEEEecc-------------------------------ccccccchhHHHHHhhCCCC---cchHHHHHHHHhhHH
Confidence 55555432100 01111111 34555555443 222344455666667
Q ss_pred HHHcCCCCCCHHHHHHHHHHhcCCCcCCCCC
Q 004256 382 AALEGREKVNVDDLKKAVELVILPRSIINET 412 (765)
Q Consensus 382 A~l~gr~~Vt~edv~~A~~lvl~hR~~~~~~ 412 (765)
|.-..|..+|+.|+-.|+.-|...-..+..+
T Consensus 398 airarrk~atekdfl~av~kvvkgy~kfsat 428 (435)
T KOG0729|consen 398 AIRARRKVATEKDFLDAVNKVVKGYAKFSAT 428 (435)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhccCC
Confidence 7777788899999999999988776655443
No 225
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.01 E-value=5.3e-09 Score=106.51 Aligned_cols=192 Identities=21% Similarity=0.256 Sum_probs=118.6
Q ss_pred CCCCCCceeechHHHHHHHHh--h-h-cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccc
Q 004256 90 QFFPLAAVVGQDAIKTALLLG--A-I-DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~--~-~-~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (765)
.+.++++++|.+..+..|.-. + + .....+|||+|++|||||+++|++......
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~----------------------- 78 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD----------------------- 78 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh-----------------------
Confidence 456788999999999988321 1 1 123467999999999999999999987642
Q ss_pred cccccccccCcccccccCCCeEeCCCCCcc--cceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHH-H
Q 004256 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS-N 242 (765)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e--~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q-~ 242 (765)
....+|.++..-.. .+++..+ ...| ..=|||+|++.-=..+.. .
T Consensus 79 ----------------~GLRlIev~k~~L~~l~~l~~~l-----------~~~~------~kFIlf~DDLsFe~~d~~yk 125 (249)
T PF05673_consen 79 ----------------QGLRLIEVSKEDLGDLPELLDLL-----------RDRP------YKFILFCDDLSFEEGDTEYK 125 (249)
T ss_pred ----------------cCceEEEECHHHhccHHHHHHHH-----------hcCC------CCEEEEecCCCCCCCcHHHH
Confidence 12344444332110 1111111 0111 123899999764333333 4
Q ss_pred HHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCC----------C----CCcch--------HHHhhhhcceeecCCCC
Q 004256 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE----------E----GVVRE--------HLLDRIAINLSADLPMT 300 (765)
Q Consensus 243 ~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~----------e----g~l~~--------~L~dRf~~~v~i~~p~~ 300 (765)
.|-.+|+ |. + ...|.++++.||+|.. + +++.+ .|.|||++.+.+. |++
T Consensus 126 ~LKs~Le-Gg--l------e~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~-~~~ 195 (249)
T PF05673_consen 126 ALKSVLE-GG--L------EARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFY-PPD 195 (249)
T ss_pred HHHHHhc-Cc--c------ccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEec-CCC
Confidence 4444554 33 2 3358899999999971 1 23332 5899999998776 778
Q ss_pred HhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCC-HHHHHHHHHHHHhCCCCCCChHHHHHH
Q 004256 301 FEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIG-REQLKYLVMEALRGGCQGHRAELYAAR 376 (765)
Q Consensus 301 ~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~-~~~l~~l~~~a~~~g~~s~Ra~i~llr 376 (765)
.+.--+|+. ++. .. -++.++ ++......+.+...|.-|.|.+...+.
T Consensus 196 q~~YL~IV~---~~~----------------------~~----~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 196 QEEYLAIVR---HYA----------------------ER----YGLELDEEELRQEALQWALRRGGRSGRTARQFID 243 (249)
T ss_pred HHHHHHHHH---HHH----------------------HH----cCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 777666665 221 11 145666 456667777777877777777665543
No 226
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=9e-09 Score=120.38 Aligned_cols=228 Identities=18% Similarity=0.217 Sum_probs=134.0
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCC-CCCCccccc--
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP-TCPDEWEDG-- 164 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~-- 164 (765)
+++..|++|+||+.++..|.-........| +||+||+|+|||++|+.+++.+. |.. ......|..
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~-----------c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN-----------CQNLTADGEACNECE 79 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCCcch
Confidence 567789999999999998855544444455 89999999999999999999763 422 112223433
Q ss_pred -ccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 165 -LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
|...-.. ....|+.+..... .+.-++...+. . ....| . .+..-+++|||++.|+.+.++.
T Consensus 80 sC~~~~~~----------~~~n~~~ld~~~~----~~vd~Ir~li~-~-~~~~P-~--~~~~KVvIIdea~~Ls~~a~na 140 (614)
T PRK14971 80 SCVAFNEQ----------RSYNIHELDAASN----NSVDDIRNLIE-Q-VRIPP-Q--IGKYKIYIIDEVHMLSQAAFNA 140 (614)
T ss_pred HHHHHhcC----------CCCceEEeccccc----CCHHHHHHHHH-H-HhhCc-c--cCCcEEEEEECcccCCHHHHHH
Confidence 3332110 1233444433210 00001101000 0 00011 1 2345699999999999999999
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhc
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~ 323 (765)
|+..|++- |..+++|.+++ +...+.+.|.+|..++ ++. |...+ +|..+...
T Consensus 141 LLK~LEep-------------p~~tifIL~tt-~~~kIl~tI~SRc~iv-~f~-~ls~~---ei~~~L~~---------- 191 (614)
T PRK14971 141 FLKTLEEP-------------PSYAIFILATT-EKHKILPTILSRCQIF-DFN-RIQVA---DIVNHLQY---------- 191 (614)
T ss_pred HHHHHhCC-------------CCCeEEEEEeC-CchhchHHHHhhhhee-ecC-CCCHH---HHHHHHHH----------
Confidence 99999873 23456666665 4467788999998664 565 33333 23222111
Q ss_pred cccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004256 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 324 ~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
++.. .++.++++++++|++.+ +. +.|..+.++.....+ .|.. |+.+++.+.+
T Consensus 192 ------------ia~~----egi~i~~~al~~La~~s---~g-dlr~al~~Lekl~~y---~~~~-It~~~V~~~l 243 (614)
T PRK14971 192 ------------VASK----EGITAEPEALNVIAQKA---DG-GMRDALSIFDQVVSF---TGGN-ITYKSVIENL 243 (614)
T ss_pred ------------HHHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHh---ccCC-ccHHHHHHHh
Confidence 1111 15788888888887665 33 567777777554433 3333 6766665443
No 227
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4e-09 Score=122.24 Aligned_cols=260 Identities=24% Similarity=0.250 Sum_probs=165.6
Q ss_pred CCCCCceeechHHHHHHHHh------hhcCCCCcEEEEC----CCCcHHHHHHHHHHhhCC---CcchhcccccCCCCCC
Q 004256 91 FFPLAAVVGQDAIKTALLLG------AIDREIGGIAISG----RRGTAKTVMARGLHAILP---PIEVVVGSIANADPTC 157 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~l~------~~~~~~~~VLi~G----e~GTGKt~lAr~l~~~l~---~~~~~~~~~~~~~~~~ 157 (765)
+-+|..+.++....++.... .+.+-..++.+++ .+|.+++..++.+-.... +......+.|
T Consensus 100 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~------ 173 (647)
T COG1067 100 PESFSELLGQKAEEKAEYLSYLILLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNF------ 173 (647)
T ss_pred CcchHHHHHhhhhHHHHHHhhhhHHHhhchhhhhhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhhhh------
Confidence 34577788877755554333 3333345688888 999999999876655422 1110000000
Q ss_pred CCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccC------CCcccCCceeeccCCeEecc
Q 004256 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTG------TTVFQPGLLAEAHRGVLYID 231 (765)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g------~~~~~~Gll~~A~~GiL~lD 231 (765)
... ......||+. ......+.|||.+. ...+.| -...+||.+.+||||+||||
T Consensus 174 --------~~~----------~~~~~~p~v~-a~~~~~~~LlG~Vr--~~~~qG~l~~~~~~~i~pGaVHkAngGVLiId 232 (647)
T COG1067 174 --------VEL----------SPLDGAPVVF-ATGAIADQLLGSVR--HDPYQGGLGTTGHIRVKPGAVHKANGGVLIID 232 (647)
T ss_pred --------hhh----------ccccCCcEEe-cCCCChhhcceeEE--EcCCCCccCCCCcccccCcccccccCcEEEEE
Confidence 000 0002356654 45566789999763 444444 55678999999999999999
Q ss_pred ccccCCHHHHHHHHHHHHcCceEEE-----eCCe---eEEeeCceEEEEeecCCC----CCcchHHHhhhhcceeec--C
Q 004256 232 EINLLDEGISNLLLNVLTEGVNIVE-----REGI---SFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSAD--L 297 (765)
Q Consensus 232 Ei~~L~~~~q~~Ll~~l~~~~~~v~-----r~G~---~~~~p~~~~lIat~N~~e----g~l~~~L~dRf~~~v~i~--~ 297 (765)
|++.|....|..+|.+|.+++..+. ..|. ...+|++|.+|...|.+. +.+.+.++.=|++.+++. +
T Consensus 233 ei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m 312 (647)
T COG1067 233 EIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTM 312 (647)
T ss_pred hhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCC
Confidence 9999999999999999988752211 0111 234789999999999754 344455555566655555 3
Q ss_pred CCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCC------CCCChH
Q 004256 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC------QGHRAE 371 (765)
Q Consensus 298 p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~------~s~Ra~ 371 (765)
|...+.|......... .+....+ -..++.+++..|+..+.+... .+.|-+
T Consensus 313 ~~~~~nr~k~~~~~~q---------------------~v~~d~~---ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl 368 (647)
T COG1067 313 PITDANRSKLVQFYVQ---------------------ELARDGN---IPHLDKDAVEELIREAARRAGDQNKLTLRLRDL 368 (647)
T ss_pred CCChHHHHHHHHHHHH---------------------HHHhcCC---CCCCCHHHHHHHHHHHHHhccccceeccCHHHH
Confidence 3334444433332111 1111111 135777787777776655321 255788
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 004256 372 LYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (765)
Q Consensus 372 i~llr~A~a~A~l~gr~~Vt~edv~~A~~l 401 (765)
..+++.|..+|..+|+..|+.+||++|+..
T Consensus 369 ~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 369 GNLVREAGDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred HHHHHHhhHHHhcCCcccCcHHHHHHHHHh
Confidence 899999999999999999999999999985
No 228
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.99 E-value=2.2e-10 Score=107.14 Aligned_cols=115 Identities=30% Similarity=0.372 Sum_probs=77.6
Q ss_pred EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCcccce
Q 004256 119 IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRL 198 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L 198 (765)
|||+||||||||++|+.+++.+. .+|+.+.+....+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~------------------------------------------~~~~~i~~~~~~~~~ 38 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG------------------------------------------FPFIEIDGSELISSY 38 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT------------------------------------------SEEEEEETTHHHTSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcc------------------------------------------ccccccccccccccc
Confidence 79999999999999999999874 234444433222211
Q ss_pred eeecccccccccCCCcccCCceeec----cCCeEeccccccCCHHH-----------HHHHHHHHHcCceEEEeCCeeEE
Q 004256 199 IGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLLDEGI-----------SNLLLNVLTEGVNIVEREGISFK 263 (765)
Q Consensus 199 ~G~~d~e~~~~~g~~~~~~Gll~~A----~~GiL~lDEi~~L~~~~-----------q~~Ll~~l~~~~~~v~r~G~~~~ 263 (765)
.+.. ++. ....+..+ ...+|||||++.+.... ++.|+..++.....
T Consensus 39 ~~~~--~~~--------i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~--------- 99 (132)
T PF00004_consen 39 AGDS--EQK--------IRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK--------- 99 (132)
T ss_dssp TTHH--HHH--------HHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT---------
T ss_pred cccc--ccc--------cccccccccccccceeeeeccchhcccccccccccccccccceeeecccccccc---------
Confidence 1110 000 01112221 25799999999997765 88999999875510
Q ss_pred eeCceEEEEeecCCCCCcchHHH-hhhhcceeec
Q 004256 264 HPCKPLLIATYNPEEGVVREHLL-DRIAINLSAD 296 (765)
Q Consensus 264 ~p~~~~lIat~N~~eg~l~~~L~-dRf~~~v~i~ 296 (765)
..++.+|+|+|. ...+.+.|. +||+..+++.
T Consensus 100 -~~~~~vI~ttn~-~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 100 -NSRVIVIATTNS-PDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp -SSSEEEEEEESS-GGGSCHHHHSTTSEEEEEE-
T ss_pred -cccceeEEeeCC-hhhCCHhHHhCCCcEEEEcC
Confidence 235899999995 888999999 9999887653
No 229
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=1.1e-08 Score=113.51 Aligned_cols=220 Identities=19% Similarity=0.262 Sum_probs=127.6
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCC-CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~-~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
++|..|++|+||+.+++.+.-...... ..++||+||+|+|||++|+++++.+.. .....+ ++.
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~-------~~~~~~------~~~--- 74 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ-------PGYDDP------NED--- 74 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-------CCCCCC------CCC---
Confidence 567789999999999988844433322 356999999999999999999987641 000000 000
Q ss_pred cccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~ 247 (765)
....++.+.... ..+.-++. .+.... ...| . .++..+++|||++.+....++.|+..
T Consensus 75 --------------~~~~~~~l~~~~----~~~~~~i~-~l~~~~-~~~p-~--~~~~kiviIDE~~~l~~~~~~~ll~~ 131 (367)
T PRK14970 75 --------------FSFNIFELDAAS----NNSVDDIR-NLIDQV-RIPP-Q--TGKYKIYIIDEVHMLSSAAFNAFLKT 131 (367)
T ss_pred --------------CCcceEEecccc----CCCHHHHH-HHHHHH-hhcc-c--cCCcEEEEEeChhhcCHHHHHHHHHH
Confidence 001111111100 00000000 000000 0001 1 23456999999999999999999999
Q ss_pred HHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccc
Q 004256 248 LTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (765)
Q Consensus 248 l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~ 327 (765)
+++. |...++|.+++ ....+.+.+.+|+.. +++. |+..++...++. .
T Consensus 132 le~~-------------~~~~~~Il~~~-~~~kl~~~l~sr~~~-v~~~-~~~~~~l~~~l~---~-------------- 178 (367)
T PRK14970 132 LEEP-------------PAHAIFILATT-EKHKIIPTILSRCQI-FDFK-RITIKDIKEHLA---G-------------- 178 (367)
T ss_pred HhCC-------------CCceEEEEEeC-CcccCCHHHHhccee-EecC-CccHHHHHHHHH---H--------------
Confidence 8763 22345565555 345667889999865 3565 333333222211 1
Q ss_pred cCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 328 ~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
++.. .++.+++++++.++..+ +. +.|..+..+.....+ .+.. |+.++++.++.
T Consensus 179 --------~~~~----~g~~i~~~al~~l~~~~---~g-dlr~~~~~lekl~~y---~~~~-it~~~v~~~~~ 231 (367)
T PRK14970 179 --------IAVK----EGIKFEDDALHIIAQKA---DG-ALRDALSIFDRVVTF---CGKN-ITRQAVTENLN 231 (367)
T ss_pred --------HHHH----cCCCCCHHHHHHHHHhC---CC-CHHHHHHHHHHHHHh---cCCC-CCHHHHHHHhC
Confidence 1111 26789999999987653 33 567777777655433 3444 99999887663
No 230
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=5.3e-10 Score=113.90 Aligned_cols=219 Identities=22% Similarity=0.290 Sum_probs=127.3
Q ss_pred CCCCceeechHHHHHHHHh----hhcC---------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCC
Q 004256 92 FPLAAVVGQDAIKTALLLG----AIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~----~~~~---------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~ 158 (765)
-.|.+|-|.+..++.+.-+ .-.| -..+|++||+||||||.||+++++.-.
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS----------------- 244 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS----------------- 244 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc-----------------
Confidence 3477888888766665322 1111 135699999999999999999997532
Q ss_pred CcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEecccccc
Q 004256 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINL 235 (765)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~~ 235 (765)
..|. +++|+.-+.+-+..|.. ...-+|.-| ...|+|||||+.
T Consensus 245 -------------------------ATFl---------RvvGseLiQkylGdGpk-lvRqlF~vA~e~apSIvFiDEIdA 289 (440)
T KOG0726|consen 245 -------------------------ATFL---------RVVGSELIQKYLGDGPK-LVRELFRVAEEHAPSIVFIDEIDA 289 (440)
T ss_pred -------------------------hhhh---------hhhhHHHHHHHhccchH-HHHHHHHHHHhcCCceEEeehhhh
Confidence 2232 23333222222222321 111122222 246999999998
Q ss_pred CC-----------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCCHh
Q 004256 236 LD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFE 302 (765)
Q Consensus 236 L~-----------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~~e 302 (765)
.. .++|..+|.+|..-. |.. ...++-+|.+|| .-..|+|+|.. |++-.+++..| +..
T Consensus 290 iGtKRyds~SggerEiQrtmLELLNQld------GFd--srgDvKvimATn-rie~LDPaLiRPGrIDrKIef~~p-De~ 359 (440)
T KOG0726|consen 290 IGTKRYDSNSGGEREIQRTMLELLNQLD------GFD--SRGDVKVIMATN-RIETLDPALIRPGRIDRKIEFPLP-DEK 359 (440)
T ss_pred hccccccCCCccHHHHHHHHHHHHHhcc------Ccc--ccCCeEEEEecc-cccccCHhhcCCCccccccccCCC-chh
Confidence 73 479999999886522 111 134788999999 44566788875 77777777654 444
Q ss_pred hHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHH-HHHHHHHHHhCCCCCCChHHHHHHHHHHH
Q 004256 303 DRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARVAKCL 381 (765)
Q Consensus 303 ~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~-l~~l~~~a~~~g~~s~Ra~i~llr~A~a~ 381 (765)
.+..|..+-. ....+.+++ ++.++..-..+ |.-....++--|..+
T Consensus 360 TkkkIf~IHT-------------------------------s~Mtl~~dVnle~li~~kddl---SGAdIkAictEaGll 405 (440)
T KOG0726|consen 360 TKKKIFQIHT-------------------------------SRMTLAEDVNLEELIMTKDDL---SGADIKAICTEAGLL 405 (440)
T ss_pred hhceeEEEee-------------------------------cccchhccccHHHHhhccccc---ccccHHHHHHHHhHH
Confidence 3433432100 001111111 12222111111 333344556666777
Q ss_pred HHHcCCCCCCHHHHHHHHHHhcCCC
Q 004256 382 AALEGREKVNVDDLKKAVELVILPR 406 (765)
Q Consensus 382 A~l~gr~~Vt~edv~~A~~lvl~hR 406 (765)
|.-+.|..|+.+|++.|.+-|+...
T Consensus 406 AlRerRm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 406 ALRERRMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhc
Confidence 8778889999999999999988754
No 231
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.94 E-value=2.8e-09 Score=119.78 Aligned_cols=130 Identities=18% Similarity=0.253 Sum_probs=88.5
Q ss_pred CeEeccccccCCH--HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC---CCcchHHHhhhh--cceeecCC
Q 004256 226 GVLYIDEINLLDE--GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRIA--INLSADLP 298 (765)
Q Consensus 226 GiL~lDEi~~L~~--~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e---g~l~~~L~dRf~--~~v~i~~p 298 (765)
.+|+||||+.+.. ..|..|+..++.-. ..| ..+|.|+|..+ ..+.+.|.+||. +.+.+. |
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~----~~~--------~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~-~ 267 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALH----ENG--------KQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIE-P 267 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHH----HCC--------CCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeC-C
Confidence 5899999998854 45677777665421 001 12334444322 346788999995 456676 6
Q ss_pred CCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 004256 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (765)
Q Consensus 299 ~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A 378 (765)
|+.+.|.+|+.... .. .++.++++++++|++.+.. +.|.+..++...
T Consensus 268 pd~~~r~~il~~~~-------------------------~~----~~~~l~~e~l~~ia~~~~~----~~r~l~~~l~~l 314 (405)
T TIGR00362 268 PDLETRLAILQKKA-------------------------EE----EGLELPDEVLEFIAKNIRS----NVRELEGALNRL 314 (405)
T ss_pred CCHHHHHHHHHHHH-------------------------HH----cCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHH
Confidence 78888887765221 11 2578999999999754422 568899888888
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHh
Q 004256 379 KCLAALEGREKVNVDDLKKAVELV 402 (765)
Q Consensus 379 ~a~A~l~gr~~Vt~edv~~A~~lv 402 (765)
.+.|.+.++ .||.+.+++++...
T Consensus 315 ~~~a~~~~~-~it~~~~~~~L~~~ 337 (405)
T TIGR00362 315 LAYASLTGK-PITLELAKEALKDL 337 (405)
T ss_pred HHHHHHhCC-CCCHHHHHHHHHHh
Confidence 888887774 69999999988754
No 232
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.91 E-value=5.1e-09 Score=119.21 Aligned_cols=132 Identities=20% Similarity=0.333 Sum_probs=90.2
Q ss_pred CeEeccccccCCH--HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC-CC-CCcchHHHhhhh--cceeecCCC
Q 004256 226 GVLYIDEINLLDE--GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP-EE-GVVREHLLDRIA--INLSADLPM 299 (765)
Q Consensus 226 GiL~lDEi~~L~~--~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~-~e-g~l~~~L~dRf~--~~v~i~~p~ 299 (765)
.+|+||||+.+.. ..|..|+..++... ..| ..++|++..+ .+ ..+.+.|.+||. +.+.+. ||
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~----~~~-------~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~-~p 280 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALH----EAG-------KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIE-PP 280 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHH----HCC-------CcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEec-CC
Confidence 4899999998853 45667777665421 011 1234443332 11 237789999995 566777 67
Q ss_pred CHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Q 004256 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (765)
Q Consensus 300 ~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~ 379 (765)
+.+.+.+|+..... . .++.++++++++|++.+ .. +.|.++.++....
T Consensus 281 d~~~r~~il~~~~~-------------------------~----~~~~l~~e~l~~ia~~~---~~-~~R~l~~~l~~l~ 327 (450)
T PRK00149 281 DLETRIAILKKKAE-------------------------E----EGIDLPDEVLEFIAKNI---TS-NVRELEGALNRLI 327 (450)
T ss_pred CHHHHHHHHHHHHH-------------------------H----cCCCCCHHHHHHHHcCc---CC-CHHHHHHHHHHHH
Confidence 88888888763211 1 25789999999996543 22 5799999999888
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHhc
Q 004256 380 CLAALEGREKVNVDDLKKAVELVI 403 (765)
Q Consensus 380 a~A~l~gr~~Vt~edv~~A~~lvl 403 (765)
+.|...++ .|+.+.+++++...+
T Consensus 328 ~~~~~~~~-~it~~~~~~~l~~~~ 350 (450)
T PRK00149 328 AYASLTGK-PITLELAKEALKDLL 350 (450)
T ss_pred HHHHhhCC-CCCHHHHHHHHHHhh
Confidence 88888875 599999999998643
No 233
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.91 E-value=7.8e-09 Score=116.62 Aligned_cols=132 Identities=20% Similarity=0.307 Sum_probs=87.6
Q ss_pred CCeEeccccccCCH--HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC---CCcchHHHhhhh--cceeecC
Q 004256 225 RGVLYIDEINLLDE--GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRIA--INLSADL 297 (765)
Q Consensus 225 ~GiL~lDEi~~L~~--~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e---g~l~~~L~dRf~--~~v~i~~ 297 (765)
-.+|+||||+.+.. ..|..|+..++... ..| . .+|.|+|..+ ..+.+.|.+||. +.+.+.
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~----~~~-------k-~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~- 269 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLH----TEG-------K-LIVISSTCAPQDLKAMEERLISRFEWGIAIPLH- 269 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHH----HCC-------C-cEEEecCCCHHHHhhhHHHHHhhhcCCeEEecC-
Confidence 35999999999854 56777777665321 011 1 2444444322 357789999994 666776
Q ss_pred CCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHH
Q 004256 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARV 377 (765)
Q Consensus 298 p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~ 377 (765)
|++.+.+..|+..... . .++.++++++++|+..+. .+.|.++..+..
T Consensus 270 ~pd~e~r~~iL~~k~~-------------------------~----~~~~l~~evl~~la~~~~----~dir~L~g~l~~ 316 (445)
T PRK12422 270 PLTKEGLRSFLERKAE-------------------------A----LSIRIEETALDFLIEALS----SNVKSLLHALTL 316 (445)
T ss_pred CCCHHHHHHHHHHHHH-------------------------H----cCCCCCHHHHHHHHHhcC----CCHHHHHHHHHH
Confidence 5677777777652211 1 247899999999976442 146888887776
Q ss_pred HH---HHHHHcCCCCCCHHHHHHHHHHhc
Q 004256 378 AK---CLAALEGREKVNVDDLKKAVELVI 403 (765)
Q Consensus 378 A~---a~A~l~gr~~Vt~edv~~A~~lvl 403 (765)
.. +.+.+.|+ .|+.+++++++.-.+
T Consensus 317 l~~~~a~~~~~~~-~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 317 LAKRVAYKKLSHQ-LLYVDDIKALLHDVL 344 (445)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHhh
Confidence 63 67777774 689999999987543
No 234
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=3.9e-09 Score=117.00 Aligned_cols=164 Identities=19% Similarity=0.179 Sum_probs=95.8
Q ss_pred CCCceeechHHHHHHHHhhhcC----------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccc
Q 004256 93 PLAAVVGQDAIKTALLLGAIDR----------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (765)
Q Consensus 93 ~f~~ivG~~~~~~aL~l~~~~~----------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 162 (765)
.|++|+||+.+++.|.-+...+ ..+.+||+||+|+|||++|+.+++.+ +|.... ...|
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l-----------~c~~~~-~~~C 70 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL-----------QCTDPD-EPGC 70 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh-----------CCCCCC-CCCC
Confidence 4788999999999884443333 23459999999999999999999875 343211 1233
Q ss_pred ---ccccccccccccCcccccccCCC-eEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCH
Q 004256 163 ---DGLDEKAEYDTAGNLKTQIARSP-FVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE 238 (765)
Q Consensus 163 ---~~~~~~~~~~~~~~~~~~~~~~~-~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~ 238 (765)
..|...... ..| +..+.+.. .-++--++ +.+.... ...| ..++..|+||||++.|+.
T Consensus 71 g~C~~C~~~~~~-----------~hpD~~~i~~~~---~~i~i~~i-R~l~~~~-~~~p---~~~~~kViiIDead~m~~ 131 (394)
T PRK07940 71 GECRACRTVLAG-----------THPDVRVVAPEG---LSIGVDEV-RELVTIA-ARRP---STGRWRIVVIEDADRLTE 131 (394)
T ss_pred CCCHHHHHHhcC-----------CCCCEEEecccc---ccCCHHHH-HHHHHHH-HhCc---ccCCcEEEEEechhhcCH
Confidence 344332211 122 21221110 01110000 1111100 0111 123456999999999999
Q ss_pred HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhh
Q 004256 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFED 303 (765)
Q Consensus 239 ~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~ 303 (765)
..++.||..|++.. +..+.|++|+| ...+.+.+.+|+-.+ .+. |+..+.
T Consensus 132 ~aanaLLk~LEep~------------~~~~fIL~a~~--~~~llpTIrSRc~~i-~f~-~~~~~~ 180 (394)
T PRK07940 132 RAANALLKAVEEPP------------PRTVWLLCAPS--PEDVLPTIRSRCRHV-ALR-TPSVEA 180 (394)
T ss_pred HHHHHHHHHhhcCC------------CCCeEEEEECC--hHHChHHHHhhCeEE-ECC-CCCHHH
Confidence 99999999998732 11245556655 467789999998543 565 444444
No 235
>PRK09087 hypothetical protein; Validated
Probab=98.88 E-value=7.1e-08 Score=99.41 Aligned_cols=129 Identities=13% Similarity=0.047 Sum_probs=83.7
Q ss_pred CeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC-CC-CCcchHHHhhhh--cceeecCCCCH
Q 004256 226 GVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP-EE-GVVREHLLDRIA--INLSADLPMTF 301 (765)
Q Consensus 226 GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~-~e-g~l~~~L~dRf~--~~v~i~~p~~~ 301 (765)
+.|+||+|+.++. .+..|+..++.-. ..| ..+||+++.+ .+ ..+.++|..||. .++++. |++.
T Consensus 89 ~~l~iDDi~~~~~-~~~~lf~l~n~~~----~~g-------~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~-~pd~ 155 (226)
T PRK09087 89 GPVLIEDIDAGGF-DETGLFHLINSVR----QAG-------TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIG-EPDD 155 (226)
T ss_pred CeEEEECCCCCCC-CHHHHHHHHHHHH----hCC-------CeEEEECCCChHHhccccccHHHHHhCCceeecC-CCCH
Confidence 6899999998753 3455666554311 001 1244444332 11 234689999994 555676 6677
Q ss_pred hhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Q 004256 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (765)
Q Consensus 302 e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~ 381 (765)
+.+..|+.... .. ..+.++++++++|+..+.+ +.|.++.++...-..
T Consensus 156 e~~~~iL~~~~-------------------------~~----~~~~l~~ev~~~La~~~~r----~~~~l~~~l~~L~~~ 202 (226)
T PRK09087 156 ALLSQVIFKLF-------------------------AD----RQLYVDPHVVYYLVSRMER----SLFAAQTIVDRLDRL 202 (226)
T ss_pred HHHHHHHHHHH-------------------------HH----cCCCCCHHHHHHHHHHhhh----hHHHHHHHHHHHHHH
Confidence 77777765321 11 2578999999999887652 568888777666666
Q ss_pred HHHcCCCCCCHHHHHHHHHH
Q 004256 382 AALEGREKVNVDDLKKAVEL 401 (765)
Q Consensus 382 A~l~gr~~Vt~edv~~A~~l 401 (765)
+...++ .||...++++++.
T Consensus 203 ~~~~~~-~it~~~~~~~l~~ 221 (226)
T PRK09087 203 ALERKS-RITRALAAEVLNE 221 (226)
T ss_pred HHHhCC-CCCHHHHHHHHHh
Confidence 666664 6999999999875
No 236
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=98.85 E-value=9.8e-08 Score=94.56 Aligned_cols=161 Identities=24% Similarity=0.276 Sum_probs=123.5
Q ss_pred EEeCCCCCCc-----hhHHHHHHHHHHHHHhhcC--CCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcC---CCCCCC
Q 004256 567 VVDASGSMAL-----NRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERL---PCGGGS 636 (765)
Q Consensus 567 vvD~SgSM~~-----~rl~~ak~a~~~ll~~~~~--~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l---~~gG~T 636 (765)
|||.|-+|.. +|+..+..++..|+...+. +-.++|+|+..+..++.+.+++.+.....+.|..+ .++|.-
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a~~ls~lsgn~~~h~~~L~~~~~~~~~G~~ 80 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRAERLSELSGNPQEHIEALKKLRKLEPSGEP 80 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecceeEEeeecCCCHHHHHHHHHHhccCCCCCCh
Confidence 6899999963 7998888888888776554 44799999999988999999999988877777665 478888
Q ss_pred hhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEE
Q 004256 637 PLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLV 716 (765)
Q Consensus 637 ~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~v 716 (765)
.|..||+.|...|......+ .+-+||++ =.-.+. | | .++.+..+.+++.+|++.+
T Consensus 81 SLqN~Le~A~~~L~~~p~~~--srEIlvi~-gSl~t~-------------D---p------~di~~ti~~l~~~~Irvsv 135 (193)
T PF04056_consen 81 SLQNGLEMARSSLKHMPSHG--SREILVIF-GSLTTC-------------D---P------GDIHETIESLKKENIRVSV 135 (193)
T ss_pred hHHHHHHHHHHHHhhCcccc--ceEEEEEE-eecccC-------------C---c------hhHHHHHHHHHHcCCEEEE
Confidence 99999999999998654322 34444444 222222 1 1 4678888999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHH
Q 004256 717 IDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKD 757 (765)
Q Consensus 717 ig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~ 757 (765)
|+... ....+++|++.|||.|..+- ++..+.+++..
T Consensus 136 I~laa---Ev~I~k~i~~~T~G~y~V~l--de~H~~~lL~~ 171 (193)
T PF04056_consen 136 ISLAA---EVYICKKICKETGGTYGVIL--DEDHFKELLME 171 (193)
T ss_pred EEEhH---HHHHHHHHHHhhCCEEEEec--CHHHHHHHHHh
Confidence 99987 46789999999999998653 45666665544
No 237
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.85 E-value=5.4e-08 Score=99.85 Aligned_cols=136 Identities=26% Similarity=0.325 Sum_probs=106.4
Q ss_pred cCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC-----------CCCCcchHHHhhhhcc
Q 004256 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP-----------EEGVVREHLLDRIAIN 292 (765)
Q Consensus 224 ~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~-----------~eg~l~~~L~dRf~~~ 292 (765)
-.|+|||||++.|+-+....|-+++++.-. -++|.++|. .+.-++-+|+||+-++
T Consensus 288 vpGVLFIDEvHMLDIEcFsFlNrAlE~d~~--------------PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII 353 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLDIECFSFLNRALENDMA--------------PIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLII 353 (454)
T ss_pred ccceEEEeeehhhhhHHHHHHHHHhhhccC--------------cEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhhee
Confidence 369999999999999999999999987641 234455554 2345778999999664
Q ss_pred eeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHH
Q 004256 293 LSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAEL 372 (765)
Q Consensus 293 v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i 372 (765)
.. .|+..++...|+.. +..-..|.+.++++++|..+.... |.|..+
T Consensus 354 -~t-~py~~~d~~~IL~i-----------------------------Rc~EEdv~m~~~A~d~Lt~i~~~t---sLRYai 399 (454)
T KOG2680|consen 354 -ST-QPYTEEDIKKILRI-----------------------------RCQEEDVEMNPDALDLLTKIGEAT---SLRYAI 399 (454)
T ss_pred -ec-ccCcHHHHHHHHHh-----------------------------hhhhhccccCHHHHHHHHHhhhhh---hHHHHH
Confidence 33 38887776666543 222346899999999999887776 779999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCc
Q 004256 373 YAARVAKCLAALEGREKVNVDDLKKAVELVILPRS 407 (765)
Q Consensus 373 ~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~hR~ 407 (765)
.++-+|...+.-+....|..+|++.|..|-|-..+
T Consensus 400 ~Lit~a~~~~~krk~~~v~~~di~r~y~LFlD~~R 434 (454)
T KOG2680|consen 400 HLITAASLVCLKRKGKVVEVDDIERVYRLFLDEKR 434 (454)
T ss_pred HHHHHHHHHHHHhcCceeehhHHHHHHHHHhhhhh
Confidence 99999999999888899999999999999876543
No 238
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.85 E-value=1.2e-07 Score=100.28 Aligned_cols=137 Identities=13% Similarity=0.072 Sum_probs=83.7
Q ss_pred CCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC-CC----cchHHHhhhhcceeecCCC
Q 004256 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-GV----VREHLLDRIAINLSADLPM 299 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e-g~----l~~~L~dRf~~~v~i~~p~ 299 (765)
..+|+|||++.++....+.|..+.+-. ..+ ...+.+|.+..++- .. -...+..|+...+.+. |.
T Consensus 124 ~~vliiDe~~~l~~~~~~~l~~l~~~~-----~~~-----~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~-~l 192 (269)
T TIGR03015 124 RALLVVDEAQNLTPELLEELRMLSNFQ-----TDN-----AKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG-PL 192 (269)
T ss_pred CeEEEEECcccCCHHHHHHHHHHhCcc-----cCC-----CCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC-CC
Confidence 358899999999988777665443321 111 01223334433321 11 1235777876554443 33
Q ss_pred CHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Q 004256 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (765)
Q Consensus 300 ~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~ 379 (765)
+.++ +..++.+. +....+.....+++++++.|++.+. | .+|....++..+.
T Consensus 193 ~~~e---~~~~l~~~----------------------l~~~g~~~~~~~~~~~~~~i~~~s~--G--~p~~i~~l~~~~~ 243 (269)
T TIGR03015 193 DREE---TREYIEHR----------------------LERAGNRDAPVFSEGAFDAIHRFSR--G--IPRLINILCDRLL 243 (269)
T ss_pred CHHH---HHHHHHHH----------------------HHHcCCCCCCCcCHHHHHHHHHHcC--C--cccHHHHHHHHHH
Confidence 4433 33322222 1222333345689999998876652 2 3789999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHH
Q 004256 380 CLAALEGREKVNVDDLKKAVEL 401 (765)
Q Consensus 380 a~A~l~gr~~Vt~edv~~A~~l 401 (765)
..|...+...|+.++|+.++..
T Consensus 244 ~~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 244 LSAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred HHHHHcCCCCCCHHHHHHHHHH
Confidence 9999999999999999999864
No 239
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.83 E-value=1.9e-08 Score=115.60 Aligned_cols=130 Identities=14% Similarity=0.219 Sum_probs=89.7
Q ss_pred CeEeccccccCCH--HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC---CCcchHHHhhh--hcceeecCC
Q 004256 226 GVLYIDEINLLDE--GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRI--AINLSADLP 298 (765)
Q Consensus 226 GiL~lDEi~~L~~--~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e---g~l~~~L~dRf--~~~v~i~~p 298 (765)
.+|+||||+.+.. ..+..|+.+++... + . +-.+|.|+|... ..+.+.|..|| ++++.|. +
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~---e-~--------gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~-~ 445 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLH---N-A--------NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQ-P 445 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHH---h-c--------CCCEEEecCCChHhhhhccHHHHhhhhcCceEEcC-C
Confidence 5899999999843 45677777776532 0 0 112444666433 34678999999 6666776 5
Q ss_pred CCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 004256 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (765)
Q Consensus 299 ~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A 378 (765)
++.+.|..|+..... -.++.++++++++|+..+.. +.|.+..++...
T Consensus 446 PD~EtR~aIL~kka~-----------------------------~r~l~l~~eVi~yLa~r~~r----nvR~LegaL~rL 492 (617)
T PRK14086 446 PELETRIAILRKKAV-----------------------------QEQLNAPPEVLEFIASRISR----NIRELEGALIRV 492 (617)
T ss_pred CCHHHHHHHHHHHHH-----------------------------hcCCCCCHHHHHHHHHhccC----CHHHHHHHHHHH
Confidence 688888887753210 12588999999999765432 468888888777
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHh
Q 004256 379 KCLAALEGREKVNVDDLKKAVELV 402 (765)
Q Consensus 379 ~a~A~l~gr~~Vt~edv~~A~~lv 402 (765)
.+.|.+.+ ..|+.+.++++++-.
T Consensus 493 ~a~a~~~~-~~itl~la~~vL~~~ 515 (617)
T PRK14086 493 TAFASLNR-QPVDLGLTEIVLRDL 515 (617)
T ss_pred HHHHHhhC-CCCCHHHHHHHHHHh
Confidence 77888876 469999998888643
No 240
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.82 E-value=3e-08 Score=119.97 Aligned_cols=164 Identities=20% Similarity=0.232 Sum_probs=130.8
Q ss_pred hccCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCC--------C-ccHHHHHHHh
Q 004256 557 ARKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPP--------S-RSIAMARKRL 627 (765)
Q Consensus 557 ~~~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~--------t-~~~~~~~~~l 627 (765)
....+.+|+|++|.||||.|.+|..+|..+..+|. .+...|.|.+++|+.. +..+.|. | ++++.+++.+
T Consensus 221 aAt~pKdiviLlD~SgSm~g~~~~lak~tv~~iLd-tLs~~Dfvni~tf~~~-~~~v~pc~~~~lvqAt~~nk~~~~~~i 298 (1104)
T KOG2353|consen 221 AATSPKDIVILLDVSGSMSGLRLDLAKQTVNEILD-TLSDNDFVNILTFNSE-VNPVSPCFNGTLVQATMRNKKVFKEAI 298 (1104)
T ss_pred ccCCccceEEEEeccccccchhhHHHHHHHHHHHH-hcccCCeEEEEeeccc-cCcccccccCceeecchHHHHHHHHHH
Confidence 34568999999999999999999999999999886 8899999999999988 5544433 3 4889999999
Q ss_pred hcCCCCCCChhHHHHHHHHHHHHhhhccCCC-----CceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHH
Q 004256 628 ERLPCGGGSPLAHGLSMAVRVGLNAEKSGDV-----GRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILE 702 (765)
Q Consensus 628 ~~l~~gG~T~l~~aL~~A~~~l~~~~~~~~~-----~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (765)
+.+.+.|-+++..|+..|+++|......+.. ..-.|+|+|||-++. ..+
T Consensus 299 ~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~--------------------------~~~ 352 (1104)
T KOG2353|consen 299 ETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDEN--------------------------AKE 352 (1104)
T ss_pred hhhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCccc--------------------------HHH
Confidence 9999999999999999999999865443322 234789999998652 123
Q ss_pred HHHHHH--hCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCCh
Q 004256 703 VAGKIY--KAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASD 748 (765)
Q Consensus 703 ~a~~~~--~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~ 748 (765)
+.+... ...|+++++-+|...++...++.+|-...|-|+++.+..+
T Consensus 353 If~~yn~~~~~Vrvftflig~~~~~~~~~~wmac~n~gyy~~I~~~~~ 400 (1104)
T KOG2353|consen 353 IFEKYNWPDKKVRVFTFLIGDEVYDLDEIQWMACANKGYYVHIISIAD 400 (1104)
T ss_pred HHHhhccCCCceEEEEEEecccccccccchhhhhhCCCceEeccchhh
Confidence 333332 4568888887777666777799999999999999987654
No 241
>PRK05642 DNA replication initiation factor; Validated
Probab=98.79 E-value=5.5e-08 Score=100.91 Aligned_cols=129 Identities=16% Similarity=0.281 Sum_probs=82.0
Q ss_pred CeEeccccccCC--HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC-CC-CCcchHHHhhhh--cceeecCCC
Q 004256 226 GVLYIDEINLLD--EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP-EE-GVVREHLLDRIA--INLSADLPM 299 (765)
Q Consensus 226 GiL~lDEi~~L~--~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~-~e-g~l~~~L~dRf~--~~v~i~~p~ 299 (765)
-+|+||+|+.+. +..+..|+..++.-. ++ | ..+||+++.+ .+ ..+.++|.+||. +.+.+. |+
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~---~~-g-------~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~-~~ 166 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLR---DS-G-------RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMR-GL 166 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHH---hc-C-------CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecC-CC
Confidence 389999999875 455677888776421 00 1 2345555432 22 334689999994 555666 55
Q ss_pred CHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Q 004256 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (765)
Q Consensus 300 ~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~ 379 (765)
+.+.+..|+... ... .++.++++++++|+..+.+ +.|.++.++..--
T Consensus 167 ~~e~~~~il~~k-------------------------a~~----~~~~l~~ev~~~L~~~~~~----d~r~l~~~l~~l~ 213 (234)
T PRK05642 167 SDEDKLRALQLR-------------------------ASR----RGLHLTDEVGHFILTRGTR----SMSALFDLLERLD 213 (234)
T ss_pred CHHHHHHHHHHH-------------------------HHH----cCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHHH
Confidence 677776665421 011 1478999999999765433 5788888887765
Q ss_pred HHHHHcCCCCCCHHHHHHHHH
Q 004256 380 CLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 380 a~A~l~gr~~Vt~edv~~A~~ 400 (765)
. +.+.....||..-+++++.
T Consensus 214 ~-~~l~~~~~it~~~~~~~L~ 233 (234)
T PRK05642 214 Q-ASLQAQRKLTIPFLKETLG 233 (234)
T ss_pred H-HHHHcCCcCCHHHHHHHhc
Confidence 4 5555435689888887764
No 242
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.77 E-value=2.1e-08 Score=113.38 Aligned_cols=131 Identities=18% Similarity=0.199 Sum_probs=87.5
Q ss_pred CCeEeccccccCC--HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC---CCcchHHHhhhh--cceeecC
Q 004256 225 RGVLYIDEINLLD--EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRIA--INLSADL 297 (765)
Q Consensus 225 ~GiL~lDEi~~L~--~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e---g~l~~~L~dRf~--~~v~i~~ 297 (765)
..+|+|||++.+. ...|..|+..+..-. ..| ..+|| +++..+ ..+.+.|.+||. +.+.+.
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~----~~~-------k~iIi-tsd~~p~~l~~l~~rL~SR~~~gl~v~i~- 261 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELH----DSG-------KQIVI-CSDREPQKLSEFQDRLVSRFQMGLVAKLE- 261 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHH----HcC-------CeEEE-ECCCCHHHHHHHHHHHhhHHhcCceEeeC-
Confidence 3589999999874 335666766664321 001 12344 443232 246678999995 455676
Q ss_pred CCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHH
Q 004256 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARV 377 (765)
Q Consensus 298 p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~ 377 (765)
||+.+.|..|+.... .. .++.++++++++|++.+.. +.|.+..++..
T Consensus 262 ~pd~e~r~~IL~~~~-------------------------~~----~~~~l~~ev~~~Ia~~~~~----~~R~L~g~l~~ 308 (440)
T PRK14088 262 PPDEETRKKIARKML-------------------------EI----EHGELPEEVLNFVAENVDD----NLRRLRGAIIK 308 (440)
T ss_pred CCCHHHHHHHHHHHH-------------------------Hh----cCCCCCHHHHHHHHhcccc----CHHHHHHHHHH
Confidence 678888888865321 11 2578999999999765432 57898888888
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHh
Q 004256 378 AKCLAALEGREKVNVDDLKKAVELV 402 (765)
Q Consensus 378 A~a~A~l~gr~~Vt~edv~~A~~lv 402 (765)
..+.|.+.++ .|+.+.+++++.-.
T Consensus 309 l~~~~~~~~~-~it~~~a~~~L~~~ 332 (440)
T PRK14088 309 LLVYKETTGE-EVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 7788888875 69999999988754
No 243
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.2e-08 Score=105.73 Aligned_cols=217 Identities=18% Similarity=0.131 Sum_probs=128.6
Q ss_pred EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCcccce
Q 004256 119 IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRL 198 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L 198 (765)
||+.||||||||+|++++++.+.= .|+- +. ....++.+++...-+.+
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSI---------R~~~------------~y------------~~~~liEinshsLFSKW 226 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSI---------RTND------------RY------------YKGQLIEINSHSLFSKW 226 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhhee---------eecC------------cc------------ccceEEEEehhHHHHHH
Confidence 999999999999999999998751 1111 11 34567888888777778
Q ss_pred eeecccccccccCCCccc----CCceeeccCC--eEeccccccCCH---------------HHHHHHHHHHHcCceEEEe
Q 004256 199 IGSVDVEESVKTGTTVFQ----PGLLAEAHRG--VLYIDEINLLDE---------------GISNLLLNVLTEGVNIVER 257 (765)
Q Consensus 199 ~G~~d~e~~~~~g~~~~~----~Gll~~A~~G--iL~lDEi~~L~~---------------~~q~~Ll~~l~~~~~~v~r 257 (765)
|+. +|+.+.+ .--|..-.|. .++|||++.|.. .++++||.-|+.=+
T Consensus 227 FsE--------SgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK----- 293 (423)
T KOG0744|consen 227 FSE--------SGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK----- 293 (423)
T ss_pred Hhh--------hhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-----
Confidence 773 1332110 0011111222 355999988732 47899999887632
Q ss_pred CCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHH
Q 004256 258 EGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQII 337 (765)
Q Consensus 258 ~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 337 (765)
.-.+|.+++|+| -...++-++.||=++...|. ||..+.+.+|..-...-+.... -.....
T Consensus 294 ------~~~NvliL~TSN-l~~siD~AfVDRADi~~yVG-~Pt~~ai~~IlkscieEL~~~g----Ii~~~~-------- 353 (423)
T KOG0744|consen 294 ------RYPNVLILATSN-LTDSIDVAFVDRADIVFYVG-PPTAEAIYEILKSCIEELISSG----IILFHQ-------- 353 (423)
T ss_pred ------cCCCEEEEeccc-hHHHHHHHhhhHhhheeecC-CccHHHHHHHHHHHHHHHHhcC----eeeeec--------
Confidence 123788999999 44567889999999988787 6788877777653321111000 000000
Q ss_pred HHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC
Q 004256 338 LAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (765)
Q Consensus 338 ~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~h 405 (765)
..-.|+..+...+..+..+.++ -.-|+ |.|....+=-. ++|.+-..-.|+.+++-.|+-++...
T Consensus 354 ~s~~~~~~i~~~~~~~~~~~~~-~~~gL-SGRtlrkLP~L--aha~y~~~~~v~~~~fl~al~ea~~k 417 (423)
T KOG0744|consen 354 RSTGVKEFIKYQKALRNILIEL-STVGL-SGRTLRKLPLL--AHAEYFRTFTVDLSNFLLALLEAAKK 417 (423)
T ss_pred cchhhhHHhHhhHhHHHHHHHH-hhcCC-ccchHhhhhHH--HHHhccCCCccChHHHHHHHHHHHHH
Confidence 0111222222223333333332 23445 67877665444 45666666789999988877766543
No 244
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.77 E-value=3.6e-08 Score=111.59 Aligned_cols=132 Identities=10% Similarity=0.187 Sum_probs=90.6
Q ss_pred CeEeccccccCC--HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC---CCcchHHHhhhh--cceeecCC
Q 004256 226 GVLYIDEINLLD--EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRIA--INLSADLP 298 (765)
Q Consensus 226 GiL~lDEi~~L~--~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e---g~l~~~L~dRf~--~~v~i~~p 298 (765)
-+|+||||+.+. ...++.|+..++... . .| -.+|.|+|..+ ..+.+.|..||. +.+.+. |
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~---~-~~--------k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~-~ 274 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFI---E-ND--------KQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQ-K 274 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHH---H-cC--------CcEEEECCCCHHHHhhccHHHHHHHhCCceeccC-C
Confidence 489999999987 667888887776532 0 01 13455555332 346789999994 666666 6
Q ss_pred CCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 004256 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (765)
Q Consensus 299 ~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A 378 (765)
++.+.+..|+..... .+. . .+.++++++++|++.+.. +.|.++.++...
T Consensus 275 pd~e~r~~iL~~~~~-------------------------~~g-l-~~~l~~evl~~Ia~~~~g----d~R~L~gaL~~l 323 (450)
T PRK14087 275 LDNKTATAIIKKEIK-------------------------NQN-I-KQEVTEEAINFISNYYSD----DVRKIKGSVSRL 323 (450)
T ss_pred cCHHHHHHHHHHHHH-------------------------hcC-C-CCCCCHHHHHHHHHccCC----CHHHHHHHHHHH
Confidence 788888888764211 111 1 247999999999766532 579999999877
Q ss_pred HHHHHHcC-CCCCCHHHHHHHHHH
Q 004256 379 KCLAALEG-REKVNVDDLKKAVEL 401 (765)
Q Consensus 379 ~a~A~l~g-r~~Vt~edv~~A~~l 401 (765)
...|.... ...|+.+.+++++.-
T Consensus 324 ~~~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 324 NFWSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred HHHHhcccCCCCCCHHHHHHHHhh
Confidence 76666653 257999999988864
No 245
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.6e-08 Score=110.96 Aligned_cols=158 Identities=20% Similarity=0.278 Sum_probs=101.0
Q ss_pred CCCCCCceeechHHHHHHHHhhhcCC------------CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALLLGAIDRE------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~~~~~------------~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~ 157 (765)
..+.|.+|.|...+++.+.-..+-|. ..++|++||||||||+|+++|+..+.
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~---------------- 211 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESG---------------- 211 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhc----------------
Confidence 44678899999999998843333222 35699999999999999999998753
Q ss_pred CCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeec-ccccccccCCCcccCCceeeccCCeEeccccccC
Q 004256 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSV-DVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL 236 (765)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~-d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L 236 (765)
..|..+..+.....++|.. -+-+++|.=+... .-+|+|||||+.+
T Consensus 212 --------------------------atff~iSassLtsK~~Ge~eK~vralf~vAr~~--------qPsvifidEidsl 257 (428)
T KOG0740|consen 212 --------------------------ATFFNISASSLTSKYVGESEKLVRALFKVARSL--------QPSVIFIDEIDSL 257 (428)
T ss_pred --------------------------ceEeeccHHHhhhhccChHHHHHHHHHHHHHhc--------CCeEEEechhHHH
Confidence 4566666555555666631 0001111111122 2458999999876
Q ss_pred -----------CHHHH-HHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhH
Q 004256 237 -----------DEGIS-NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDR 304 (765)
Q Consensus 237 -----------~~~~q-~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r 304 (765)
++.+. ..|++. .|....-..+++|||||| .+.+++++++.||.-++.|.. |+.+.|
T Consensus 258 ls~Rs~~e~e~srr~ktefLiq~----------~~~~s~~~drvlvigaTN-~P~e~Dea~~Rrf~kr~yipl-Pd~etr 325 (428)
T KOG0740|consen 258 LSKRSDNEHESSRRLKTEFLLQF----------DGKNSAPDDRVLVIGATN-RPWELDEAARRRFVKRLYIPL-PDYETR 325 (428)
T ss_pred HhhcCCcccccchhhhhHHHhhh----------ccccCCCCCeEEEEecCC-CchHHHHHHHHHhhceeeecC-CCHHHH
Confidence 11222 222222 222222334789999999 677788899999998887774 466666
Q ss_pred HHHHH
Q 004256 305 VAAVG 309 (765)
Q Consensus 305 ~dI~~ 309 (765)
..+..
T Consensus 326 ~~~~~ 330 (428)
T KOG0740|consen 326 SLLWK 330 (428)
T ss_pred HHHHH
Confidence 65544
No 246
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.75 E-value=1.5e-08 Score=114.15 Aligned_cols=202 Identities=18% Similarity=0.214 Sum_probs=132.3
Q ss_pred CCceeechHHHHHHH--H-hhh---cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcch--hcc----cccCCCCCCCCc-
Q 004256 94 LAAVVGQDAIKTALL--L-GAI---DREIGGIAISGRRGTAKTVMARGLHAILPPIEV--VVG----SIANADPTCPDE- 160 (765)
Q Consensus 94 f~~ivG~~~~~~aL~--l-~~~---~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~--~~~----~~~~~~~~~~~~- 160 (765)
|.++.|++..+..+. + .++ .....-++|.||||+|||+||+.|+..+..... +++ ||.+-+|-.-.-
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~~sP~~e~PL~L~p~ 154 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGERSPVNESPLGLFDP 154 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCCCCCCCCCCCCCCCh
Confidence 789999999988872 2 122 222334899999999999999999998766433 445 888777753221
Q ss_pred ---------------------ccccccccccccccCcccccccCCCeEe-------------CCC----CCcccceeeec
Q 004256 161 ---------------------WEDGLDEKAEYDTAGNLKTQIARSPFVQ-------------IPL----GVTEDRLIGSV 202 (765)
Q Consensus 161 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~-------------l~~----~~~e~~L~G~~ 202 (765)
+|+.|..++.. -+|.+ ...+++. .++ +.....|+|.+
T Consensus 155 ~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~e-~~Gd~----~~~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L~G~v 229 (644)
T PRK15455 155 DEDGPILEEEYGIPRRYLGTIMSPWAVKRLHE-FGGDI----SKFRVVKVYPSILRQIAIAKTEPGDENNQDISSLVGKV 229 (644)
T ss_pred hhhHHHHHHHhCCCccccCCCCCHHHHHHHHH-hCCCc----hheEEEEEeeccccceEEEecCCCCCCCCChhHhccce
Confidence 23334333311 12221 1122222 111 13456899999
Q ss_pred ccccccccCCC----cccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC
Q 004256 203 DVEESVKTGTT----VFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE 278 (765)
Q Consensus 203 d~e~~~~~g~~----~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e 278 (765)
|+.+-..-+.. ....|.|..|++|++=+=|+-..+.+.+..||.+.++|. |.-.+.--.+|.+-+|||.||-.+
T Consensus 230 di~kl~~ys~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~--i~~~~~~~~i~~D~vIiaHsNE~E 307 (644)
T PRK15455 230 DIRKLEHYAQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGN--YNGTEGIGAIPFDGIILAHSNESE 307 (644)
T ss_pred eHHhhhccCCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCc--ccCCCCcceeccceeEEecCCHHH
Confidence 88764322221 123688999999988776999999999999999999998 422233335788999999999632
Q ss_pred ------CCcchHHHhhhhcceeecCCCCHhhHH
Q 004256 279 ------GVVREHLLDRIAINLSADLPMTFEDRV 305 (765)
Q Consensus 279 ------g~l~~~L~dRf~~~v~i~~p~~~e~r~ 305 (765)
....++|+||+-+ |.+|+...-.+
T Consensus 308 ~~~F~~nk~nEA~~DRi~~---V~VPY~lr~~e 337 (644)
T PRK15455 308 WQTFRNNKNNEAFLDRIYI---VKVPYCLRVSE 337 (644)
T ss_pred HHHHhcCccchhhhceEEE---EeCCccCChhH
Confidence 4567899999855 44576655333
No 247
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=6.4e-08 Score=113.21 Aligned_cols=211 Identities=21% Similarity=0.144 Sum_probs=133.5
Q ss_pred CCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccccccc
Q 004256 93 PLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYD 172 (765)
Q Consensus 93 ~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (765)
.++-+||.+..++.+.-........+-+|+||||+|||.++..++.....
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~------------------------------ 217 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVN------------------------------ 217 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhc------------------------------
Confidence 45669999998887744444456677888999999999999999987643
Q ss_pred ccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCc----ccCCceeeccCCeEeccccccC---------CHH
Q 004256 173 TAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTV----FQPGLLAEAHRGVLYIDEINLL---------DEG 239 (765)
Q Consensus 173 ~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~----~~~Gll~~A~~GiL~lDEi~~L---------~~~ 239 (765)
+..+....+..++.++.+... -| +-+-|... ..---+.++.+-|||||||+.+ .-+
T Consensus 218 --g~VP~~L~~~~i~sLD~g~Lv---AG------akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~D 286 (786)
T COG0542 218 --GDVPESLKDKRIYSLDLGSLV---AG------AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMD 286 (786)
T ss_pred --CCCCHHHcCCEEEEecHHHHh---cc------ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccc
Confidence 111111134444444443211 11 01111110 0011123344569999999976 145
Q ss_pred HHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC----CcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHH
Q 004256 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (765)
Q Consensus 240 ~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg----~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~ 315 (765)
.-+.|..+|..|. +++||+|+.+|. +-+++|-.||..+ .+. .|+.+.-..|++=.
T Consensus 287 AaNiLKPaLARGe---------------L~~IGATT~~EYRk~iEKD~AL~RRFQ~V-~V~-EPs~e~ti~ILrGl---- 345 (786)
T COG0542 287 AANLLKPALARGE---------------LRCIGATTLDEYRKYIEKDAALERRFQKV-LVD-EPSVEDTIAILRGL---- 345 (786)
T ss_pred hhhhhHHHHhcCC---------------eEEEEeccHHHHHHHhhhchHHHhcCcee-eCC-CCCHHHHHHHHHHH----
Confidence 7788888999887 578899988765 2468999999886 577 46777776776411
Q ss_pred HhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCC--CCCChHHHHHHHHHHHHHHcC
Q 004256 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC--QGHRAELYAARVAKCLAALEG 386 (765)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~--~s~Ra~i~llr~A~a~A~l~g 386 (765)
-..|+.-.+|+++++++...+.+..++=. .=+-.+|.++..|.+...+.-
T Consensus 346 ---------------------k~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~ 397 (786)
T COG0542 346 ---------------------KERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEI 397 (786)
T ss_pred ---------------------HHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhcc
Confidence 11223334688888888888887766521 013457778888877776653
No 248
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=98.74 E-value=3.8e-08 Score=112.26 Aligned_cols=183 Identities=19% Similarity=0.187 Sum_probs=103.7
Q ss_pred cccceeeecccccccccCC-----CcccCCceeeccCCeEeccccccCC-HHHHHHHHHHHHcCceEEEeCC---e----
Q 004256 194 TEDRLIGSVDVEESVKTGT-----TVFQPGLLAEAHRGVLYIDEINLLD-EGISNLLLNVLTEGVNIVEREG---I---- 260 (765)
Q Consensus 194 ~e~~L~G~~d~e~~~~~g~-----~~~~~Gll~~A~~GiL~lDEi~~L~-~~~q~~Ll~~l~~~~~~v~r~G---~---- 260 (765)
+...|||.+.... ..|. ...+||.|.+||||+|+|+--+.|. +.+...|.++|..|.+.++..+ .
T Consensus 299 t~~nLfG~Ie~~~--~~G~~~td~~~I~~GaLhkANGGyLIL~a~~LL~~p~~W~~LKr~L~~~~i~ie~~~~~~~~~~~ 376 (509)
T PF13654_consen 299 TYSNLFGRIEYES--EMGTLVTDFTLIKPGALHKANGGYLILDAEDLLANPYAWERLKRALRTGEIEIESPEEYGLSSTV 376 (509)
T ss_dssp -HHHHH-EE-------------GGGGEE--HHHHTTTSEEEETTGGGS-HHH-HHHHHHHHHHSEE--B-S---TTSGGG
T ss_pred CHHHCcEEEEEEC--CCCCEecCcceEcCceEEecCCeEEEEEHHHhhhChHHHHHHHHHHHcCceeeccccccccCCCC
Confidence 3457888875333 2232 2357999999999999999999997 5779999999999998877653 1
Q ss_pred ---eEEeeCceEEEEeecCCC----CCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHH
Q 004256 261 ---SFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAK 333 (765)
Q Consensus 261 ---~~~~p~~~~lIat~N~~e----g~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (765)
...+|.++.||-.-++.. ..+++++..-|.+.++++. ...+-.+-......|+...+.
T Consensus 377 ~l~PepIpl~vKVILiG~~~~y~~L~~~D~dF~~lFkv~aef~~--~~~~~~e~~~~~~~~i~~~~~------------- 441 (509)
T PF13654_consen 377 SLEPEPIPLDVKVILIGDRELYYLLYEYDPDFYKLFKVKAEFDS--EMPRTEENIRQYARFIASICQ------------- 441 (509)
T ss_dssp G-B-S-EE---EEEEEE-TTHHHHS-HHHHHHHHHHSEEEE--S--EEE--HHHHHHHHHHHHHHHH-------------
T ss_pred CCCCCCcceEEEEEEEcCHHHHHHHHHhCHHHHhCCCEEEEccc--cCCCCHHHHHHHHHHHHHHHH-------------
Confidence 124666666666656543 3567889999988877662 222222222222233332222
Q ss_pred HHHHHHhcccCCccCCHHHHHHHHHHHHhCCCC--CC--ChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 004256 334 TQIILAREYLKDVAIGREQLKYLVMEALRGGCQ--GH--RAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (765)
Q Consensus 334 ~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~--s~--Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~l 401 (765)
.+.. -.++.+++..+++++.+..-. |. .....+++-|-..|...|...|+.+||..|++.
T Consensus 442 -----~~~L---~~~~~~Av~~li~~~~R~~q~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~ 505 (509)
T PF13654_consen 442 -----KEGL---PPFDRSAVARLIEYSARLDQDKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIEE 505 (509)
T ss_dssp -----HHSS-----BBHHHHHHHHHHHHHCC-SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH
T ss_pred -----hCCC---CCCCHHHHHHHHHHHHHHhCCEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHc
Confidence 2211 257777888888877765210 11 235668899999999999999999999999875
No 249
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.73 E-value=1.9e-07 Score=112.12 Aligned_cols=213 Identities=21% Similarity=0.159 Sum_probs=144.9
Q ss_pred hcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCC
Q 004256 112 IDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPL 191 (765)
Q Consensus 112 ~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 191 (765)
..-..-||||.||+.||||.+..++++... ..||.++.
T Consensus 884 ~s~~~fP~LiQGpTSSGKTSMI~yla~~tg------------------------------------------hkfVRINN 921 (4600)
T COG5271 884 ASLSNFPLLIQGPTSSGKTSMILYLARETG------------------------------------------HKFVRINN 921 (4600)
T ss_pred HhhcCCcEEEecCCCCCcchHHHHHHHHhC------------------------------------------ccEEEecC
Confidence 334578999999999999999999998754 35666543
Q ss_pred C--CcccceeeecccccccccCCCcccCCceeec--cCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEee-C
Q 004256 192 G--VTEDRLIGSVDVEESVKTGTTVFQPGLLAEA--HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHP-C 266 (765)
Q Consensus 192 ~--~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A--~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p-~ 266 (765)
. ..-.+.+|+. .+-.+|...++.|.|..| +|-.++|||+|..|.+++.+|-++|++.+-.+-++-....+| .
T Consensus 922 HEHTdlqeYiGTy---vTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp 998 (4600)
T COG5271 922 HEHTDLQEYIGTY---VTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHP 998 (4600)
T ss_pred cccchHHHHhhce---eecCCCceeeehhHHHHHHhcCcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCC
Confidence 3 2233556653 233357777888888877 567999999999999999999999988665454555544444 3
Q ss_pred ceEEEEeecCCCC-----CcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhc
Q 004256 267 KPLLIATYNPEEG-----VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILARE 341 (765)
Q Consensus 267 ~~~lIat~N~~eg-----~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~ 341 (765)
+|++.||.||--+ -++.++..||--+ .+... ..++.+.|+.
T Consensus 999 ~F~lFATQNppg~YgGRK~LSrAFRNRFlE~-hFddi-pedEle~ILh-------------------------------- 1044 (4600)
T COG5271 999 NFRLFATQNPPGGYGGRKGLSRAFRNRFLEM-HFDDI-PEDELEEILH-------------------------------- 1044 (4600)
T ss_pred CeeEEeecCCCccccchHHHHHHHHhhhHhh-hcccC-cHHHHHHHHh--------------------------------
Confidence 8999999998432 4788999999443 23311 1223333321
Q ss_pred ccCCccCCHHHHHHHHHHHHhCCCCCCChHHH-------HHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCcC
Q 004256 342 YLKDVAIGREQLKYLVMEALRGGCQGHRAELY-------AARVAKCLAALEGREKVNVDDLKKAVELVILPRSI 408 (765)
Q Consensus 342 ~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~-------llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~hR~~ 408 (765)
+...+.+..-..|++..+.+ |.|..+. ...+-|.+-.|.||..|.-+.+..-=-+.|..|.+
T Consensus 1045 --~rc~iapSyakKiVeVyr~L---s~rRs~~rifeqknsfaTLRDLFrWa~R~avgy~qla~~GymllaER~R 1113 (4600)
T COG5271 1045 --GRCEIAPSYAKKIVEVYRGL---SSRRSINRIFEQKNSFATLRDLFRWAGRIAVGYDQLAFLGYMLLAERQR 1113 (4600)
T ss_pred --ccCccCHHHHHHHHHHHHHh---hhhhhHHHHHHhhhhHHHHHHHHHHhccccchHHHHHHhhHHHHHHHhc
Confidence 23566666677777776666 3344444 44556677778888888888886655555666654
No 250
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=98.70 E-value=4.3e-08 Score=104.86 Aligned_cols=204 Identities=21% Similarity=0.210 Sum_probs=131.0
Q ss_pred CC-ceeechHHHHHH--HHhhhcCC----CCcEEEECCCCcHHHHHHHHHHhhCCCcc--hhcccccCCCCCCC------
Q 004256 94 LA-AVVGQDAIKTAL--LLGAIDRE----IGGIAISGRRGTAKTVMARGLHAILPPIE--VVVGSIANADPTCP------ 158 (765)
Q Consensus 94 f~-~ivG~~~~~~aL--~l~~~~~~----~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~--~~~~~~~~~~~~~~------ 158 (765)
|+ ++.|.+..+..+ -+..++.. ..=++|.||+|+|||++++.|.+.+.... .+.+||.+-+|-.-
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P~~~r 138 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFPKELR 138 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCCHhHH
Confidence 44 799999987777 22222222 22389999999999999999999887643 36789888877521
Q ss_pred ------------CcccccccccccccccCcccc---------cccCCCeEeCCC----CCcccceeeecccccccccC--
Q 004256 159 ------------DEWEDGLDEKAEYDTAGNLKT---------QIARSPFVQIPL----GVTEDRLIGSVDVEESVKTG-- 211 (765)
Q Consensus 159 ------------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~l~~----~~~e~~L~G~~d~e~~~~~g-- 211 (765)
-..|..|+.++...-.|.+.. ...+.-..++.+ +.....|.|.+|+.+-..-+
T Consensus 139 ~~~~~~~~~~i~g~l~p~~~~~L~~~y~Gd~~~~~V~r~~~S~~~r~GI~~f~P~D~~~qd~s~LtG~vd~~kl~~~s~~ 218 (358)
T PF08298_consen 139 REFEDELGIRIEGELCPWCRKRLLEEYGGDIEKFRVERLYFSERDRVGIGTFEPGDEKNQDISDLTGSVDIRKLAEYSES 218 (358)
T ss_pred HHHHHHhCcccCCCcCHHHHHHHHHHhCCCccEEEEEEEccceecceeEEEECCCCCCCcchhhhhhHHHHHHHhhhccC
Confidence 123455555442222222211 000111111222 22345788988765533212
Q ss_pred -CCcc-cCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC------CCcch
Q 004256 212 -TTVF-QPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE------GVVRE 283 (765)
Q Consensus 212 -~~~~-~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e------g~l~~ 283 (765)
...+ ..|.|..|++|++=+=|+-..+.+.+..||.+.++|.+.+ .+.....+.+-++||.||+.+ .+-.+
T Consensus 219 dp~af~~~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~--~~~~~~i~~D~liiAhsNe~E~~~f~~~~~~e 296 (358)
T PF08298_consen 219 DPRAFSYSGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKV--DEDFGMIPFDELIIAHSNEEEYNKFKNNKNNE 296 (358)
T ss_pred CCeeEeeccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceec--CCcccccccceeEEecCCHHHHHHHhccccch
Confidence 1122 2588999999999888999999999999999999999554 233334678899999999744 23458
Q ss_pred HHHhhhhcceeecCCCCHh
Q 004256 284 HLLDRIAINLSADLPMTFE 302 (765)
Q Consensus 284 ~L~dRf~~~v~i~~p~~~e 302 (765)
+|.||+.++ .| |+..+
T Consensus 297 Af~DRi~~I-~V--PY~L~ 312 (358)
T PF08298_consen 297 AFKDRIEVI-KV--PYCLR 312 (358)
T ss_pred hhhhheEEE-ec--cccCC
Confidence 999999543 55 55444
No 251
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.69 E-value=3.4e-08 Score=98.14 Aligned_cols=212 Identities=18% Similarity=0.184 Sum_probs=126.2
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (765)
+++.-+.+|||.+..+..|.+-+-...-.+++|.|||||||||.+..+++.+-.-..
T Consensus 21 YrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~----------------------- 77 (333)
T KOG0991|consen 21 YRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSY----------------------- 77 (333)
T ss_pred hCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhh-----------------------
Confidence 455567889999999999965555455678999999999999999999987542000
Q ss_pred ccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCC-CcccCCceeeccCCeEeccccccCCHHHHHHHHHH
Q 004256 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGT-TVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (765)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~-~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~ 247 (765)
.-.+ +..++++++=+..+--.--.|... ...-|| ..-|++|||.+.|....|.+|.+.
T Consensus 78 --------------ke~v--LELNASdeRGIDvVRn~IK~FAQ~kv~lp~g-----rhKIiILDEADSMT~gAQQAlRRt 136 (333)
T KOG0991|consen 78 --------------KEAV--LELNASDERGIDVVRNKIKMFAQKKVTLPPG-----RHKIIILDEADSMTAGAQQALRRT 136 (333)
T ss_pred --------------hhHh--hhccCccccccHHHHHHHHHHHHhhccCCCC-----ceeEEEeeccchhhhHHHHHHHHH
Confidence 0001 233344443222110000011111 122234 335999999999999999999999
Q ss_pred HHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccc
Q 004256 248 LTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (765)
Q Consensus 248 l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~ 327 (765)
|+-... ..++..++|. ...+-+++-+|..+. ... +-.-.+|+.+..
T Consensus 137 MEiyS~-------------ttRFalaCN~-s~KIiEPIQSRCAiL-Rys----klsd~qiL~Rl~--------------- 182 (333)
T KOG0991|consen 137 MEIYSN-------------TTRFALACNQ-SEKIIEPIQSRCAIL-RYS----KLSDQQILKRLL--------------- 182 (333)
T ss_pred HHHHcc-------------cchhhhhhcc-hhhhhhhHHhhhHhh-hhc----ccCHHHHHHHHH---------------
Confidence 985431 2355566673 344557777887764 222 111223333221
Q ss_pred cCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 004256 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (765)
Q Consensus 328 ~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A 398 (765)
.--.| ..|..+++-++.++..+.. ..|..++.++.. ..|-..|+.|.|-.+
T Consensus 183 ----------~v~k~-Ekv~yt~dgLeaiifta~G----DMRQalNnLQst-----~~g~g~Vn~enVfKv 233 (333)
T KOG0991|consen 183 ----------EVAKA-EKVNYTDDGLEAIIFTAQG----DMRQALNNLQST-----VNGFGLVNQENVFKV 233 (333)
T ss_pred ----------HHHHH-hCCCCCcchHHHhhhhccc----hHHHHHHHHHHH-----hccccccchhhhhhc
Confidence 11112 2488899999888766532 367777777653 345556666665433
No 252
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=3.6e-08 Score=111.33 Aligned_cols=155 Identities=20% Similarity=0.212 Sum_probs=100.2
Q ss_pred CCCCCCceeechHHHHHHHHhhhc-------------CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALLLGAID-------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~~~-------------~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
.-..+.+|-|...++..|.-...- +...+|||+||||||||.||-+++..++
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~--------------- 726 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN--------------- 726 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC---------------
Confidence 346688999999999888322111 1346799999999999999999998643
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCcee---eccCCeEecccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYIDEI 233 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~---~A~~GiL~lDEi 233 (765)
..|+.+-....-+..+|.- | ....-++. .|...|||+||+
T Consensus 727 ---------------------------~~fisvKGPElL~KyIGaS--E--------q~vR~lF~rA~~a~PCiLFFDEf 769 (952)
T KOG0735|consen 727 ---------------------------LRFISVKGPELLSKYIGAS--E--------QNVRDLFERAQSAKPCILFFDEF 769 (952)
T ss_pred ---------------------------eeEEEecCHHHHHHHhccc--H--------HHHHHHHHHhhccCCeEEEeccc
Confidence 4455543332223344420 0 01111222 235679999999
Q ss_pred ccCC-----------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCC
Q 004256 234 NLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMT 300 (765)
Q Consensus 234 ~~L~-----------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~ 300 (765)
+.+. +.+++.||.-|+.-+ |. ..+.++|+|. .+.-++++|+. ||+-.|.... |+
T Consensus 770 dSiAPkRGhDsTGVTDRVVNQlLTelDG~E------gl-----~GV~i~aaTs-RpdliDpALLRpGRlD~~v~C~~-P~ 836 (952)
T KOG0735|consen 770 DSIAPKRGHDSTGVTDRVVNQLLTELDGAE------GL-----DGVYILAATS-RPDLIDPALLRPGRLDKLVYCPL-PD 836 (952)
T ss_pred cccCcccCCCCCCchHHHHHHHHHhhcccc------cc-----ceEEEEEecC-CccccCHhhcCCCccceeeeCCC-CC
Confidence 9884 468999999987432 11 1245566655 55567777775 8888876664 57
Q ss_pred HhhHHHHHH
Q 004256 301 FEDRVAAVG 309 (765)
Q Consensus 301 ~e~r~dI~~ 309 (765)
..+|.||+.
T Consensus 837 ~~eRl~il~ 845 (952)
T KOG0735|consen 837 EPERLEILQ 845 (952)
T ss_pred cHHHHHHHH
Confidence 777888875
No 253
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=1.3e-07 Score=103.52 Aligned_cols=185 Identities=17% Similarity=0.214 Sum_probs=95.9
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCC-cEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIG-GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~-~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
.+|..|..|+||+.++..|.-+.-..... .+||+||+|+||+++|+.+++.+-.-..-...+..+ .+|..-|..|..
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~--~~~~~~c~~c~~ 94 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL--ADPDPASPVWRQ 94 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc--CCCCCCCHHHHH
Confidence 35667889999999999996554433333 499999999999999999999864200000000000 001111222222
Q ss_pred cccccccCcccccccCCCeEeC--CCCCccc---ceeeecccccccccCCCcccCCce-eeccCCeEeccccccCCHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQI--PLGVTED---RLIGSVDVEESVKTGTTVFQPGLL-AEAHRGVLYIDEINLLDEGIS 241 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l--~~~~~e~---~L~G~~d~e~~~~~g~~~~~~Gll-~~A~~GiL~lDEi~~L~~~~q 241 (765)
... + ...-+..+ +...... ..++ +|--+.+.. + -... .....-|++|||++.|+...+
T Consensus 95 i~~----~------~hPdl~~l~~~~~~~~~~~~~~I~-vd~iR~l~~----~-l~~~~~~g~~rVviIDeAd~l~~~aa 158 (351)
T PRK09112 95 IAQ----G------AHPNLLHITRPFDEKTGKFKTAIT-VDEIRRVGH----F-LSQTSGDGNWRIVIIDPADDMNRNAA 158 (351)
T ss_pred HHc----C------CCCCEEEeecccccccccccccCC-HHHHHHHHH----H-hhhccccCCceEEEEEchhhcCHHHH
Confidence 110 0 01111111 1000000 0000 000000000 0 0000 011234999999999999999
Q ss_pred HHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHH
Q 004256 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAA 307 (765)
Q Consensus 242 ~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI 307 (765)
+.||..|++-. .+..+|..++ ..+.+.+.+.+|+. .+.+. |+..+.-.++
T Consensus 159 naLLk~LEEpp-------------~~~~fiLit~-~~~~llptIrSRc~-~i~l~-pl~~~~~~~~ 208 (351)
T PRK09112 159 NAILKTLEEPP-------------ARALFILISH-SSGRLLPTIRSRCQ-PISLK-PLDDDELKKA 208 (351)
T ss_pred HHHHHHHhcCC-------------CCceEEEEEC-ChhhccHHHHhhcc-EEEec-CCCHHHHHHH
Confidence 99999998742 2233333333 34567799999985 44665 5555544333
No 254
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=98.64 E-value=8e-07 Score=91.59 Aligned_cols=166 Identities=19% Similarity=0.255 Sum_probs=127.5
Q ss_pred ceEEEEEeCCCCCCc-----hhHHHHHHHHHHHHHhhcCCC--CeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCC-CC
Q 004256 562 ALVIFVVDASGSMAL-----NRMQNAKGAALKLLAESYTCR--DQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLP-CG 633 (765)
Q Consensus 562 ~~vv~vvD~SgSM~~-----~rl~~ak~a~~~ll~~~~~~~--d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~-~g 633 (765)
+.+++|||.|-+|.. +|+..+-..+..++...|.++ .++|+|...+..|+.+...|.+.+.-...|..+. .+
T Consensus 61 Rhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~ltgnp~~hI~aL~~~~~~~ 140 (378)
T KOG2807|consen 61 RHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTDLTGNPRIHIHALKGLTECS 140 (378)
T ss_pred eeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHHhcCCHHHHHHHHhcccccC
Confidence 678999999999963 677766556777777665443 7999999988879999999999998888888887 66
Q ss_pred CCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCE
Q 004256 634 GGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMS 713 (765)
Q Consensus 634 G~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~ 713 (765)
|.-.|..||+.|.+.|....... .+-++|+++-=- +. || .++.+..+.++..+|+
T Consensus 141 g~fSLqNaLe~a~~~Lk~~p~H~--sREVLii~ssls-T~-------------DP---------gdi~~tI~~lk~~kIR 195 (378)
T KOG2807|consen 141 GDFSLQNALELAREVLKHMPGHV--SREVLIIFSSLS-TC-------------DP---------GDIYETIDKLKAYKIR 195 (378)
T ss_pred CChHHHHHHHHHHHHhcCCCccc--ceEEEEEEeeec-cc-------------Cc---------ccHHHHHHHHHhhCeE
Confidence 67789999999999988764332 355666665322 11 11 3567788889999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHH
Q 004256 714 LLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKD 757 (765)
Q Consensus 714 ~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~ 757 (765)
+.+||... .....++|+++|||.|..+ +++..+..++..
T Consensus 196 vsvIgLsa---Ev~icK~l~kaT~G~Y~V~--lDe~HlkeLl~e 234 (378)
T KOG2807|consen 196 VSVIGLSA---EVFICKELCKATGGRYSVA--LDEGHLKELLLE 234 (378)
T ss_pred EEEEeech---hHHHHHHHHHhhCCeEEEE--eCHHHHHHHHHh
Confidence 99999876 3568999999999988776 356677766654
No 255
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.8e-08 Score=102.73 Aligned_cols=219 Identities=20% Similarity=0.242 Sum_probs=128.1
Q ss_pred CCCCCCceeechHHHHHHH----HhhhcC---------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALL----LGAIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~----l~~~~~---------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
..+.|+.|-|....++.+. +-..+| -..+++|+||||||||.+||+++..+.
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg--------------- 191 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG--------------- 191 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC---------------
Confidence 4567889999888887772 112222 124599999999999999999998764
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccC
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL 236 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L 236 (765)
..|+.+..+..++...|.- .+-+..- + .....-...++|+|||+..
T Consensus 192 ---------------------------~nfl~v~ss~lv~kyiGEs--aRlIRem---f--~yA~~~~pciifmdeiDAi 237 (388)
T KOG0651|consen 192 ---------------------------VNFLKVVSSALVDKYIGES--ARLIRDM---F--RYAREVIPCIIFMDEIDAI 237 (388)
T ss_pred ---------------------------CceEEeeHhhhhhhhcccH--HHHHHHH---H--HHHhhhCceEEeehhhhhh
Confidence 4566666666666666631 0101000 0 0001112379999999875
Q ss_pred -----------CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCCHhh
Q 004256 237 -----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFED 303 (765)
Q Consensus 237 -----------~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~~e~ 303 (765)
+.++|..|.+++++-. .+. .-.++-+|.|+| +...|.|+|+. |++-.+++.+| ....
T Consensus 238 gGRr~se~Ts~dreiqrTLMeLlnqmd-gfd-------~l~rVk~ImatN-rpdtLdpaLlRpGRldrk~~iPlp-ne~~ 307 (388)
T KOG0651|consen 238 GGRRFSEGTSSDREIQRTLMELLNQMD-GFD-------TLHRVKTIMATN-RPDTLDPALLRPGRLDRKVEIPLP-NEQA 307 (388)
T ss_pred ccEEeccccchhHHHHHHHHHHHHhhc-cch-------hcccccEEEecC-CccccchhhcCCccccceeccCCc-chhh
Confidence 4578999999887421 011 123577899999 77777788875 67766677644 3333
Q ss_pred HHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Q 004256 304 RVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAA 383 (765)
Q Consensus 304 r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~ 383 (765)
|.+|.. |-.++- ...| .+.++. ++.+...+|+.. ..+.++-|--.|.
T Consensus 308 r~~I~K----ih~~~i---------------------~~~G--eid~ea---ivK~~d~f~gad---~rn~~tEag~Fa~ 354 (388)
T KOG0651|consen 308 RLGILK----IHVQPI---------------------DFHG--EIDDEA---ILKLVDGFNGAD---LRNVCTEAGMFAI 354 (388)
T ss_pred ceeeEe----eccccc---------------------cccc--cccHHH---HHHHHhccChHH---Hhhhccccccccc
Confidence 333322 100000 1112 233333 333444454422 3444555555666
Q ss_pred HcCCCCCCHHHHHHHHH
Q 004256 384 LEGREKVNVDDLKKAVE 400 (765)
Q Consensus 384 l~gr~~Vt~edv~~A~~ 400 (765)
-+.+++|..||...++.
T Consensus 355 ~~~~~~vl~Ed~~k~vr 371 (388)
T KOG0651|consen 355 PEERDEVLHEDFMKLVR 371 (388)
T ss_pred chhhHHHhHHHHHHHHH
Confidence 67778888888776654
No 256
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=98.63 E-value=1.9e-07 Score=105.22 Aligned_cols=134 Identities=23% Similarity=0.339 Sum_probs=97.2
Q ss_pred cccCCCCCCCCccchhHHHHhcCCchhhhhhcccccCceeEEeccchhhhhhhccCCceEEEEEeCCCCCCc-----hhH
Q 004256 505 IKPMLPKGPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMAL-----NRM 579 (765)
Q Consensus 505 ~r~~~~~~~~~~id~~~Tlraaap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~~~~~~vv~vvD~SgSM~~-----~rl 579 (765)
+|+|.|+|+.+.|||.+|.|..- +++++++.....++++++|+|.||.. +++
T Consensus 191 lReY~pGD~~r~IdWkasAR~g~-----------------------l~vrefe~er~~~v~l~lD~~~~m~~~~~~~~~~ 247 (416)
T COG1721 191 LREYQPGDDLRRIDWKASARTGK-----------------------LLVREFEEERGRTVVLVLDASRSMLFGSGVASKF 247 (416)
T ss_pred hcCCCCCCcccccchhhhcccCC-----------------------ceeehhhhhcCceEEEEEeCCccccCCCCCccHH
Confidence 79999999999999999887654 45555555567999999999999972 799
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcC---CCCCC-ChhHHHHHHHHHHHHhhhcc
Q 004256 580 QNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERL---PCGGG-SPLAHGLSMAVRVGLNAEKS 655 (765)
Q Consensus 580 ~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l---~~gG~-T~l~~aL~~A~~~l~~~~~~ 655 (765)
+.+-.++..+...++..+|+||++.|++. ....+++.+....+...++.+ +..+. |+...+... ...
T Consensus 248 e~av~~a~~la~~~l~~gd~vg~~~~~~~-~~~~~~p~~G~~~l~~~l~~l~~~~~~~~~~~~~~~~~~-~~~------- 318 (416)
T COG1721 248 EEAVRAAASLAYAALKNGDRVGLLIFGGG-GPKWIPPSRGRRHLARILKALALLRPAPEETDYIRRVSK-LDF------- 318 (416)
T ss_pred HHHHHHHHHHHHHHHhCCCeeEEEEECCC-cceeeCCCcchHHHHHHHHHhhccCCCCcchhHHHHhhh-hhc-------
Confidence 99999999999999999999999999987 556778877655555555544 44433 333333222 111
Q ss_pred CCCCceEEEEEeCCC
Q 004256 656 GDVGRIMIVAITDGR 670 (765)
Q Consensus 656 ~~~~~~~vvliTDG~ 670 (765)
-...+++++++||=.
T Consensus 319 l~~~~~~~~~~~~l~ 333 (416)
T COG1721 319 LPPRRPLVILITDLA 333 (416)
T ss_pred cCcccceEEEeehhh
Confidence 112245778888755
No 257
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=2e-07 Score=102.65 Aligned_cols=51 Identities=24% Similarity=0.251 Sum_probs=42.2
Q ss_pred CCCCCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhC
Q 004256 90 QFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
+|..|.+|+||+.+++.|.-+.......| +||+||+|+||+++|.++++.+
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45668899999999999965544444455 9999999999999999999976
No 258
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.1e-08 Score=111.82 Aligned_cols=115 Identities=21% Similarity=0.280 Sum_probs=72.9
Q ss_pred eEeccccccC-------------CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhc
Q 004256 227 VLYIDEINLL-------------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAI 291 (765)
Q Consensus 227 iL~lDEi~~L-------------~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~ 291 (765)
|+++|||+.. .+.+++.||.-|+. +-.+ .++.||+-|| ...-++++|+. ||.+
T Consensus 327 IIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDG-VeqL----------NNILVIGMTN-R~DlIDEALLRPGRlEV 394 (744)
T KOG0741|consen 327 IIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDG-VEQL----------NNILVIGMTN-RKDLIDEALLRPGRLEV 394 (744)
T ss_pred EEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhccc-HHhh----------hcEEEEeccC-chhhHHHHhcCCCceEE
Confidence 8999999865 56799999998863 2111 2678999999 33444556664 9999
Q ss_pred ceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHH-HHHHHHHHHhCCCCCCCh
Q 004256 292 NLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRA 370 (765)
Q Consensus 292 ~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~-l~~l~~~a~~~g~~s~Ra 370 (765)
.++|.+| +..-|.+|..+-..- .+.+.. +++++ ++.|+.+...+ |.-.
T Consensus 395 qmEIsLP-DE~gRlQIl~IHT~r----------------------Mre~~~-----l~~dVdl~elA~lTKNf---SGAE 443 (744)
T KOG0741|consen 395 QMEISLP-DEKGRLQILKIHTKR----------------------MRENNK-----LSADVDLKELAALTKNF---SGAE 443 (744)
T ss_pred EEEEeCC-CccCceEEEEhhhhh----------------------hhhcCC-----CCCCcCHHHHHHHhcCC---chhH
Confidence 9999976 666666665532211 111222 22221 44555555554 5567
Q ss_pred HHHHHHHHHHHHHH
Q 004256 371 ELYAARVAKCLAAL 384 (765)
Q Consensus 371 ~i~llr~A~a~A~l 384 (765)
+..+++.|...|.-
T Consensus 444 leglVksA~S~A~n 457 (744)
T KOG0741|consen 444 LEGLVKSAQSFAMN 457 (744)
T ss_pred HHHHHHHHHHHHHH
Confidence 77788888877764
No 259
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.61 E-value=9.2e-08 Score=98.15 Aligned_cols=113 Identities=22% Similarity=0.256 Sum_probs=68.1
Q ss_pred CeEeccccccCCHH--HHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC--CC-CCcchHHHhhhhc--ceeecCC
Q 004256 226 GVLYIDEINLLDEG--ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP--EE-GVVREHLLDRIAI--NLSADLP 298 (765)
Q Consensus 226 GiL~lDEi~~L~~~--~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~--~e-g~l~~~L~dRf~~--~v~i~~p 298 (765)
-+|+||+|+.+... .|..|+..++.-. ..| -.+|.|++. .+ ..+.++|..||.- .+.|. |
T Consensus 99 DlL~iDDi~~l~~~~~~q~~lf~l~n~~~----~~~--------k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~-~ 165 (219)
T PF00308_consen 99 DLLIIDDIQFLAGKQRTQEELFHLFNRLI----ESG--------KQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQ-P 165 (219)
T ss_dssp SEEEEETGGGGTTHHHHHHHHHHHHHHHH----HTT--------SEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE---
T ss_pred CEEEEecchhhcCchHHHHHHHHHHHHHH----hhC--------CeEEEEeCCCCccccccChhhhhhHhhcchhhcC-C
Confidence 49999999999764 4888888776532 111 134444443 32 3478999999955 55665 5
Q ss_pred CCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 004256 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (765)
Q Consensus 299 ~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A 378 (765)
|+.+.+.+|+.... .. .++.++++++++|++.+.+ +.|.+..++..-
T Consensus 166 pd~~~r~~il~~~a-------------------------~~----~~~~l~~~v~~~l~~~~~~----~~r~L~~~l~~l 212 (219)
T PF00308_consen 166 PDDEDRRRILQKKA-------------------------KE----RGIELPEEVIEYLARRFRR----DVRELEGALNRL 212 (219)
T ss_dssp --HHHHHHHHHHHH-------------------------HH----TT--S-HHHHHHHHHHTTS----SHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-------------------------HH----hCCCCcHHHHHHHHHhhcC----CHHHHHHHHHHH
Confidence 67777777765221 11 2466999999998766432 468888877776
Q ss_pred HHHHHH
Q 004256 379 KCLAAL 384 (765)
Q Consensus 379 ~a~A~l 384 (765)
.+.+.+
T Consensus 213 ~~~~~~ 218 (219)
T PF00308_consen 213 DAYAQL 218 (219)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 666643
No 260
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.58 E-value=7.6e-07 Score=89.38 Aligned_cols=153 Identities=25% Similarity=0.307 Sum_probs=93.6
Q ss_pred CCCCCCceeechHHHHHHHH---hhh-cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccc
Q 004256 90 QFFPLAAVVGQDAIKTALLL---GAI-DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l---~~~-~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (765)
.+.++..|+|-+..+.+|.- .-+ .-...+|||+|-.|||||+++++++.....
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~----------------------- 111 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD----------------------- 111 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh-----------------------
Confidence 45677889999999999831 111 112357999999999999999999987642
Q ss_pred cccccccccCcccccccCCCeEeCCCCC--cccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 166 DEKAEYDTAGNLKTQIARSPFVQIPLGV--TEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~l~~~~--~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
....+|.++..- +-..|++-+ ...| ..=|||+|++.-=..+.-.+
T Consensus 112 ----------------~glrLVEV~k~dl~~Lp~l~~~L-----------r~~~------~kFIlFcDDLSFe~gd~~yK 158 (287)
T COG2607 112 ----------------EGLRLVEVDKEDLATLPDLVELL-----------RARP------EKFILFCDDLSFEEGDDAYK 158 (287)
T ss_pred ----------------cCCeEEEEcHHHHhhHHHHHHHH-----------hcCC------ceEEEEecCCCCCCCchHHH
Confidence 233455544321 001122211 1112 22389999986554444444
Q ss_pred HH-HHHHcCceEEEeCCeeEEeeCceEEEEeecCC----------C---CCcch--------HHHhhhhcceeecCCCCH
Q 004256 244 LL-NVLTEGVNIVEREGISFKHPCKPLLIATYNPE----------E---GVVRE--------HLLDRIAINLSADLPMTF 301 (765)
Q Consensus 244 Ll-~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~----------e---g~l~~--------~L~dRf~~~v~i~~p~~~ 301 (765)
.| .+|+.+. ...|.++.+.||+|.. + +++.+ .|-|||++.+.+. |.+-
T Consensus 159 ~LKs~LeG~v---------e~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~-~~~Q 228 (287)
T COG2607 159 ALKSALEGGV---------EGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFY-PCDQ 228 (287)
T ss_pred HHHHHhcCCc---------ccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeeccc-CCCH
Confidence 44 4454332 3368899999999972 1 13322 4789999987665 6666
Q ss_pred hhHHHHH
Q 004256 302 EDRVAAV 308 (765)
Q Consensus 302 e~r~dI~ 308 (765)
++--.|+
T Consensus 229 ~~YL~~V 235 (287)
T COG2607 229 DEYLKIV 235 (287)
T ss_pred HHHHHHH
Confidence 6544443
No 261
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.5e-07 Score=110.37 Aligned_cols=199 Identities=23% Similarity=0.252 Sum_probs=123.3
Q ss_pred CCCCCceeechHHHHHHH----HhhhcC---------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCC
Q 004256 91 FFPLAAVVGQDAIKTALL----LGAIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~----l~~~~~---------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~ 157 (765)
...|+.|-|.+..+..|. +-...| -..+||++||||||||++||+++....+-.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~------------- 327 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN------------- 327 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc-------------
Confidence 356889999998777762 111111 135699999999999999999998765310
Q ss_pred CCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccc---cccCCCcccCCceeeccCCeEeccccc
Q 004256 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEES---VKTGTTVFQPGLLAEAHRGVLYIDEIN 234 (765)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~---~~~g~~~~~~Gll~~A~~GiL~lDEi~ 234 (765)
.+.-|..-......+.++|.. ++. +|..+...+ -.|+|+|||+
T Consensus 328 ------------------------~kisffmrkgaD~lskwvgEa--ERqlrllFeeA~k~q--------PSIIffdeId 373 (1080)
T KOG0732|consen 328 ------------------------RKISFFMRKGADCLSKWVGEA--ERQLRLLFEEAQKTQ--------PSIIFFDEID 373 (1080)
T ss_pred ------------------------cccchhhhcCchhhccccCcH--HHHHHHHHHHHhccC--------ceEEeccccc
Confidence 122222222223334566642 121 122222222 3489999999
Q ss_pred cCCH-----------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHH--HhhhhcceeecCCCCH
Q 004256 235 LLDE-----------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHL--LDRIAINLSADLPMTF 301 (765)
Q Consensus 235 ~L~~-----------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L--~dRf~~~v~i~~p~~~ 301 (765)
-|.+ .++..||.+|+.=. -...++||+++| .+..+.++| .-||+-.+.+.+| +.
T Consensus 374 GlapvrSskqEqih~SIvSTLLaLmdGld-----------sRgqVvvigATn-Rpda~dpaLRRPgrfdref~f~lp-~~ 440 (1080)
T KOG0732|consen 374 GLAPVRSSKQEQIHASIVSTLLALMDGLD-----------SRGQVVVIGATN-RPDAIDPALRRPGRFDREFYFPLP-DV 440 (1080)
T ss_pred cccccccchHHHhhhhHHHHHHHhccCCC-----------CCCceEEEcccC-CccccchhhcCCcccceeEeeeCC-ch
Confidence 6643 56788888876421 123689999999 566678888 5689887777765 56
Q ss_pred hhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Q 004256 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (765)
Q Consensus 302 e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~ 381 (765)
+.|..|+.+ ..+.|. -.++...+..+++.+..++. ++ +++-++.
T Consensus 441 ~ar~~Il~I---------------------------htrkw~--~~i~~~l~~~la~~t~gy~g----aD---lkaLCTe 484 (1080)
T KOG0732|consen 441 DARAKILDI---------------------------HTRKWE--PPISRELLLWLAEETSGYGG----AD---LKALCTE 484 (1080)
T ss_pred HHHHHHHHH---------------------------hccCCC--CCCCHHHHHHHHHhccccch----HH---HHHHHHH
Confidence 666666552 345676 36777788888777666543 33 4444555
Q ss_pred HHHc
Q 004256 382 AALE 385 (765)
Q Consensus 382 A~l~ 385 (765)
|++.
T Consensus 485 Aal~ 488 (1080)
T KOG0732|consen 485 AALI 488 (1080)
T ss_pred Hhhh
Confidence 5543
No 262
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=8e-07 Score=93.05 Aligned_cols=134 Identities=18% Similarity=0.181 Sum_probs=78.3
Q ss_pred cCCeEeccccccCC------------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC---CCCCcchHHHhh
Q 004256 224 HRGVLYIDEINLLD------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP---EEGVVREHLLDR 288 (765)
Q Consensus 224 ~~GiL~lDEi~~L~------------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~---~eg~l~~~L~dR 288 (765)
+.||+|||||+... ..+|.-||-.++...+ ...-|.... -.+.+||+--- .+..|-|.|--|
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV-~TKyG~VkT--dHILFIasGAFh~sKPSDLiPELQGR 326 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTV-STKYGPVKT--DHILFIASGAFHVAKPSDLIPELQGR 326 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCcee-ecccccccc--ceEEEEecCceecCChhhcChhhcCC
Confidence 47999999998762 2577778877754432 223332111 13455554321 456788999999
Q ss_pred hhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCC---
Q 004256 289 IAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC--- 365 (765)
Q Consensus 289 f~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~--- 365 (765)
|.+.|++. +.+.+.-..|+.- + ....-.....++.... -.+.+++++++.|++++...|-
T Consensus 327 fPIRVEL~-~Lt~~Df~rILte-------p-------~~sLikQY~aLlkTE~--v~l~FtddaI~~iAeiA~~vN~~~E 389 (444)
T COG1220 327 FPIRVELD-ALTKEDFERILTE-------P-------KASLIKQYKALLKTEG--VELEFTDDAIKRIAEIAYQVNEKTE 389 (444)
T ss_pred CceEEEcc-cCCHHHHHHHHcC-------c-------chHHHHHHHHHHhhcC--eeEEecHHHHHHHHHHHHHhccccc
Confidence 99999887 4555554444321 1 0011111122222211 2368999999999999987643
Q ss_pred -CCCChHHHHHHH
Q 004256 366 -QGHRAELYAARV 377 (765)
Q Consensus 366 -~s~Ra~i~llr~ 377 (765)
.|.|.+-.++..
T Consensus 390 NIGARRLhTvlEr 402 (444)
T COG1220 390 NIGARRLHTVLER 402 (444)
T ss_pred chhHHHHHHHHHH
Confidence 256666665543
No 263
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.5e-06 Score=103.31 Aligned_cols=134 Identities=25% Similarity=0.326 Sum_probs=85.9
Q ss_pred ceeechHHHHHHHHh----hh---cC-CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 96 AVVGQDAIKTALLLG----AI---DR-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 96 ~ivG~~~~~~aL~l~----~~---~~-~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
.|+||+.+..++..+ .. .+ .+..+||.||.|+|||-||++|+..+-.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fg------------------------- 617 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFG------------------------- 617 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcC-------------------------
Confidence 489999999988322 21 11 3455999999999999999999998753
Q ss_pred cccccccCcccccccCCCeEeCCCCCcc--cceeeecccccccccCCCcccCCceeec----cCCeEeccccccCCHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLLDEGIS 241 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~~~e--~~L~G~~d~e~~~~~g~~~~~~Gll~~A----~~GiL~lDEi~~L~~~~q 241 (765)
....|+.++.+... .++.|.-.--.+.. .-|.|..+ -..|++||||+..++.++
T Consensus 618 --------------se~~~IriDmse~~evskligsp~gyvG~e------~gg~LteavrrrP~sVVLfdeIEkAh~~v~ 677 (898)
T KOG1051|consen 618 --------------SEENFIRLDMSEFQEVSKLIGSPPGYVGKE------EGGQLTEAVKRRPYSVVLFEEIEKAHPDVL 677 (898)
T ss_pred --------------CccceEEechhhhhhhhhccCCCcccccch------hHHHHHHHHhcCCceEEEEechhhcCHHHH
Confidence 34556666554211 12222100000000 01122222 345999999999999999
Q ss_pred HHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC
Q 004256 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP 276 (765)
Q Consensus 242 ~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~ 276 (765)
+.|++++++|+++ -..|....+ .+++||.|+|.
T Consensus 678 n~llq~lD~Grlt-Ds~Gr~Vd~-kN~I~IMTsn~ 710 (898)
T KOG1051|consen 678 NILLQLLDRGRLT-DSHGREVDF-KNAIFIMTSNV 710 (898)
T ss_pred HHHHHHHhcCccc-cCCCcEeec-cceEEEEeccc
Confidence 9999999999942 122333333 37889999886
No 264
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.44 E-value=3.2e-06 Score=93.02 Aligned_cols=131 Identities=19% Similarity=0.258 Sum_probs=91.3
Q ss_pred CeEeccccccCCH--HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC---CCcchHHHhhhhc--ceeecCC
Q 004256 226 GVLYIDEINLLDE--GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRIAI--NLSADLP 298 (765)
Q Consensus 226 GiL~lDEi~~L~~--~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e---g~l~~~L~dRf~~--~v~i~~p 298 (765)
-+|+||+|+.+.. ..|..++.....=. ..| . .||.|+..-+ ..+.+.|..||.- .+.|. |
T Consensus 177 dlllIDDiq~l~gk~~~qeefFh~FN~l~----~~~-------k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~-~ 243 (408)
T COG0593 177 DLLLIDDIQFLAGKERTQEEFFHTFNALL----ENG-------K-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIE-P 243 (408)
T ss_pred CeeeechHhHhcCChhHHHHHHHHHHHHH----hcC-------C-EEEEEcCCCchhhccccHHHHHHHhceeEEeeC-C
Confidence 4899999999754 45777777664311 111 1 4555554333 3466999999954 55565 6
Q ss_pred CCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 004256 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (765)
Q Consensus 299 ~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A 378 (765)
|+.+.+..|+... .-..++.++++++.+++....+ +.|.+..++...
T Consensus 244 Pd~e~r~aiL~kk-----------------------------a~~~~~~i~~ev~~~la~~~~~----nvReLegaL~~l 290 (408)
T COG0593 244 PDDETRLAILRKK-----------------------------AEDRGIEIPDEVLEFLAKRLDR----NVRELEGALNRL 290 (408)
T ss_pred CCHHHHHHHHHHH-----------------------------HHhcCCCCCHHHHHHHHHHhhc----cHHHHHHHHHHH
Confidence 7888887776531 1123689999999999754332 578999999888
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhc
Q 004256 379 KCLAALEGREKVNVDDLKKAVELVI 403 (765)
Q Consensus 379 ~a~A~l~gr~~Vt~edv~~A~~lvl 403 (765)
-+.|...++ .||.+-+.++++..+
T Consensus 291 ~~~a~~~~~-~iTi~~v~e~L~~~~ 314 (408)
T COG0593 291 DAFALFTKR-AITIDLVKEILKDLL 314 (408)
T ss_pred HHHHHhcCc-cCcHHHHHHHHHHhh
Confidence 888988887 999999999988644
No 265
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=98.42 E-value=9e-06 Score=81.25 Aligned_cols=149 Identities=20% Similarity=0.195 Sum_probs=83.6
Q ss_pred ccCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEE-------E----cCCCc-cHHHHHH
Q 004256 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEV-------L----LPPSR-SIAMARK 625 (765)
Q Consensus 558 ~~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~-------~----~p~t~-~~~~~~~ 625 (765)
......|-|+||+||||.+.++..|...+--+....-.-+-.+-|+.|.+. +.. . .|... -+..+..
T Consensus 9 ~~~d~~VtlLID~SGSMrgr~~~vA~~~adila~aL~~~gvp~EVlGFtT~-aw~gg~~~~~w~~~G~p~~pgrln~l~h 87 (219)
T PF11775_consen 9 PFRDTVVTLLIDCSGSMRGRPIEVAALCADILARALERCGVPVEVLGFTTR-AWKGGRSREAWLAAGRPRYPGRLNDLRH 87 (219)
T ss_pred ccCCeEEEEEEeCCcCCCCChHHHHHHHHHHHHHHHHhCCCCeEEEeeecC-CcCCcchHHHHHhcCCCCCChHHHHHHH
Confidence 344677889999999999988887754333333322234667778888655 110 0 01110 1111111
Q ss_pred H---------------hhcCCC-C--CCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCC
Q 004256 626 R---------------LERLPC-G--GGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASD 687 (765)
Q Consensus 626 ~---------------l~~l~~-g--G~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~ 687 (765)
. |..|.. + .-.-=+.||..|.+.|.+... .+.++++||||.|...-+...++
T Consensus 88 ~vyk~a~~~wrraR~~l~~m~~~~~~~eniDGeAl~~a~~rL~~r~e----~rkiLiViSDG~P~d~st~~~n~------ 157 (219)
T PF11775_consen 88 IVYKDADTPWRRARRNLGLMMREGLLKENIDGEALRWAAERLLARPE----QRKILIVISDGAPADDSTLSAND------ 157 (219)
T ss_pred HHHHhcCChhhhHHHhHHHHhhccccccCCcHHHHHHHHHHHHcCCc----cceEEEEEeCCCcCcccccccCC------
Confidence 1 111110 0 111125667777666654332 24589999999987432221111
Q ss_pred CCCCCchhHHHHHHHHHHHHHh-CCCEEEEEeCCCC
Q 004256 688 APRPSSQELKDEILEVAGKIYK-AGMSLLVIDTENK 722 (765)
Q Consensus 688 ~~~~~~~~~~~~~~~~a~~~~~-~gi~~~vig~~~~ 722 (765)
...+...+.+..+.+.. .+|.++.||++.+
T Consensus 158 -----~~~L~~HLr~vi~~ie~~~~Vel~aiGIg~D 188 (219)
T PF11775_consen 158 -----GDYLDAHLRQVIAEIETRSDVELIAIGIGHD 188 (219)
T ss_pred -----hHHHHHHHHHHHHHHhccCCcEEEEEEcCCC
Confidence 13555677777777765 5799999999874
No 266
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=6.6e-07 Score=97.65 Aligned_cols=165 Identities=17% Similarity=0.109 Sum_probs=94.2
Q ss_pred CCceee-chHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc---c
Q 004256 94 LAAVVG-QDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE---K 168 (765)
Q Consensus 94 f~~ivG-~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 168 (765)
|..|+| |+.+++.|.-..-.....| .||+||+|+||+++|+.+++.+- |........|..|.. .
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~-----------c~~~~~~~~cg~C~~c~~~ 72 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLF-----------CLERNGVEPCGTCTNCKRI 72 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHC-----------CCCCCCCCCCCcCHHHHHH
Confidence 456888 8888888744433334455 59999999999999999998753 432222334444333 2
Q ss_pred ccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHH
Q 004256 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (765)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l 248 (765)
... .. .+..++.. .+. -++--++ +.+.. .....| ..+..-|++|||++.|+...++.||..|
T Consensus 73 ~~~----~h----pD~~~i~~-~~~----~i~id~i-r~l~~-~~~~~~---~~~~~kvviI~~a~~~~~~a~NaLLK~L 134 (329)
T PRK08058 73 DSG----NH----PDVHLVAP-DGQ----SIKKDQI-RYLKE-EFSKSG---VESNKKVYIIEHADKMTASAANSLLKFL 134 (329)
T ss_pred hcC----CC----CCEEEecc-ccc----cCCHHHH-HHHHH-HHhhCC---cccCceEEEeehHhhhCHHHHHHHHHHh
Confidence 110 00 11111111 110 0010000 00000 000011 1234569999999999999999999999
Q ss_pred HcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhh
Q 004256 249 TEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFED 303 (765)
Q Consensus 249 ~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~ 303 (765)
++- |..+++|.+++ ....+.+.+.+|.-.+ ++. |+..++
T Consensus 135 EEP-------------p~~~~~Il~t~-~~~~ll~TIrSRc~~i-~~~-~~~~~~ 173 (329)
T PRK08058 135 EEP-------------SGGTTAILLTE-NKHQILPTILSRCQVV-EFR-PLPPES 173 (329)
T ss_pred cCC-------------CCCceEEEEeC-ChHhCcHHHHhhceee-eCC-CCCHHH
Confidence 973 23455666665 4557888999998765 565 444443
No 267
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=1.5e-06 Score=93.88 Aligned_cols=171 Identities=20% Similarity=0.215 Sum_probs=94.6
Q ss_pred CCCceeechHHHHHHHHhhhcCC-CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccc
Q 004256 93 PLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (765)
Q Consensus 93 ~f~~ivG~~~~~~aL~l~~~~~~-~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (765)
.|++|+||+.++..|.-+.-... .+..||+||.|+||+++|+++++.+- |...|..|++ |. +.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~ll-----------c~~~c~~c~~--~~--~~- 65 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLL-----------SQGSPSKNIR--RR--LE- 65 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHc-----------CCCCCCCcHh--cc--cc-
Confidence 47889999999998854433333 46699999999999999999998763 3322222222 22 10
Q ss_pred cccCcccccccCCCeEeCCCCCcccce--------ee-------ecccc--cccccCCCcccCCceeeccCCeEeccccc
Q 004256 172 DTAGNLKTQIARSPFVQIPLGVTEDRL--------IG-------SVDVE--ESVKTGTTVFQPGLLAEAHRGVLYIDEIN 234 (765)
Q Consensus 172 ~~~~~~~~~~~~~~~v~l~~~~~e~~L--------~G-------~~d~e--~~~~~g~~~~~~Gll~~A~~GiL~lDEi~ 234 (765)
.+.+ .+.-|+. |........ .| .+-++ +.+.. .....| ..+..-|++||+++
T Consensus 66 --~~~h----PDl~~i~-p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~-~l~~~p---~~~~~kVvII~~ae 134 (314)
T PRK07399 66 --EGNH----PDLLWVE-PTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKR-FLSRPP---LEAPRKVVVIEDAE 134 (314)
T ss_pred --cCCC----CCEEEEe-ccccccccccchhhhhhccccccccccCcHHHHHHHHH-HHccCc---ccCCceEEEEEchh
Confidence 0000 0111111 100000000 00 00000 00000 000000 11345699999999
Q ss_pred cCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHH
Q 004256 235 LLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAA 307 (765)
Q Consensus 235 ~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI 307 (765)
.|....+++||..|++- | +.++|..++ ....+.+.+.+|.-.+ .+. |+..+.-.++
T Consensus 135 ~m~~~aaNaLLK~LEEP-------------p-~~~fILi~~-~~~~Ll~TI~SRcq~i-~f~-~l~~~~~~~~ 190 (314)
T PRK07399 135 TMNEAAANALLKTLEEP-------------G-NGTLILIAP-SPESLLPTIVSRCQII-PFY-RLSDEQLEQV 190 (314)
T ss_pred hcCHHHHHHHHHHHhCC-------------C-CCeEEEEEC-ChHhCcHHHHhhceEE-ecC-CCCHHHHHHH
Confidence 99999999999999873 2 344555554 5568889999998554 565 4444444333
No 268
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.1e-06 Score=99.45 Aligned_cols=73 Identities=19% Similarity=0.328 Sum_probs=55.9
Q ss_pred CCeEeccccccCCH----------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh-hhhcce
Q 004256 225 RGVLYIDEINLLDE----------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD-RIAINL 293 (765)
Q Consensus 225 ~GiL~lDEi~~L~~----------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d-Rf~~~v 293 (765)
..++|||||+.+-+ .+...|+.+|+.-. -..++++|+++| .+..++++|.. ||+..+
T Consensus 279 psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~-----------~~~~vivl~atn-rp~sld~alRRgRfd~ev 346 (693)
T KOG0730|consen 279 PSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK-----------PDAKVIVLAATN-RPDSLDPALRRGRFDREV 346 (693)
T ss_pred CeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc-----------CcCcEEEEEecC-CccccChhhhcCCCccee
Confidence 56899999998853 56777888776422 123678999999 67778899886 999999
Q ss_pred eecCCCCHhhHHHHHHH
Q 004256 294 SADLPMTFEDRVAAVGI 310 (765)
Q Consensus 294 ~i~~p~~~e~r~dI~~l 310 (765)
.|..| +...|.||++.
T Consensus 347 ~IgiP-~~~~RldIl~~ 362 (693)
T KOG0730|consen 347 EIGIP-GSDGRLDILRV 362 (693)
T ss_pred eecCC-CchhHHHHHHH
Confidence 99975 77777888764
No 269
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=98.37 E-value=1.9e-05 Score=82.26 Aligned_cols=177 Identities=18% Similarity=0.212 Sum_probs=120.7
Q ss_pred CceEEEEEeCCCC-CCchhHHHHHHHHHHHHHhhcC--CCCeEEEEEeeCCCcEE-------------E--------cCC
Q 004256 561 GALVIFVVDASGS-MALNRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEV-------------L--------LPP 616 (765)
Q Consensus 561 ~~~vv~vvD~SgS-M~~~rl~~ak~a~~~ll~~~~~--~~d~v~lv~F~~~~a~~-------------~--------~p~ 616 (765)
+..++||||+|.. ....-++.++.++...+. .+. ++.+||||+|++. ..+ + +|.
T Consensus 3 pp~~vFvID~s~~ai~~~~l~~~~~sl~~~l~-~lp~~~~~~igiITf~~~-V~~~~~~~~~~~~~~~v~~dl~d~f~p~ 80 (239)
T cd01468 3 PPVFVFVIDVSYEAIKEGLLQALKESLLASLD-LLPGDPRARVGLITYDST-VHFYNLSSDLAQPKMYVVSDLKDVFLPL 80 (239)
T ss_pred CCEEEEEEEcchHhccccHHHHHHHHHHHHHH-hCCCCCCcEEEEEEeCCe-EEEEECCCCCCCCeEEEeCCCccCcCCC
Confidence 5678999999985 333457888888888886 556 8899999999764 211 1 121
Q ss_pred C--------ccHHHHHHHhhcCCCC--------CCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCC
Q 004256 617 S--------RSIAMARKRLERLPCG--------GGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTD 680 (765)
Q Consensus 617 t--------~~~~~~~~~l~~l~~g--------G~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~ 680 (765)
. .....+...|+.|+.. ....++.||..|..++...... ..|++++.|.+|.|.+.-..
T Consensus 81 ~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~g-----GkI~~f~sg~pt~GpG~l~~ 155 (239)
T cd01468 81 PDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTFAG-----GRIIVFQGGLPTVGPGKLKS 155 (239)
T ss_pred cCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcCCC-----ceEEEEECCCCCCCCCcccc
Confidence 1 1234566666666432 2467899999999998765311 25788999999988754211
Q ss_pred cccCCCCCCC-----CCchhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCC
Q 004256 681 PEATASDAPR-----PSSQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNA 746 (765)
Q Consensus 681 ~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~ 746 (765)
.. ...... .-.....+-...++..+.+.+|.+-++-+...+++...+..|+..|||..++-++.
T Consensus 156 ~~--~~~~~~~~~e~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l~~~TGG~v~~y~~f 224 (239)
T cd01468 156 RE--DKEPIRSHDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQLAKSTGGQVYLYDSF 224 (239)
T ss_pred Cc--ccccCCCccchhcccccHHHHHHHHHHHHHcCeEEEEEeccccccCHHHhhhhhhcCCceEEEeCCC
Confidence 10 000000 00011124456788888899999988888877888899999999999999999887
No 270
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=3e-06 Score=98.85 Aligned_cols=54 Identities=13% Similarity=-0.010 Sum_probs=40.1
Q ss_pred cCCCCCCCceeechHHHHHHHH--hhhc-C-CCCc-EEEECCCCcHHHHHHHHHHhhCC
Q 004256 88 GRQFFPLAAVVGQDAIKTALLL--GAID-R-EIGG-IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l--~~~~-~-~~~~-VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
+.+|..+++|+|+...+..|.- ..+. + ..+. ++|+||+|||||++++.++..+.
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567778999999998777632 2111 1 1122 99999999999999999998875
No 271
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.33 E-value=6.1e-06 Score=90.60 Aligned_cols=212 Identities=16% Similarity=0.146 Sum_probs=123.1
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCc
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~ 194 (765)
...++++.||+|||||.++.+|..... | ..+-| .+
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a-----------~----------------------------~sG~f------~T 242 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVI-----------L----------------------------ISGGT------IT 242 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHH-----------H----------------------------HcCCc------Cc
Confidence 568999999999999999998765421 0 01111 33
Q ss_pred ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCC----HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEE
Q 004256 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD----EGISNLLLNVLTEGVNIVEREGISFKHPCKPLL 270 (765)
Q Consensus 195 e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~----~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~l 270 (765)
...||..+- ....|.+...+ +|+|||+..++ .+.+..|.+.|++|. ++|........+.+++
T Consensus 243 ~a~Lf~~L~----------~~~lg~v~~~D--lLI~DEvgylp~~~~~~~v~imK~yMesg~--fsRG~~~~~a~as~vf 308 (449)
T TIGR02688 243 VAKLFYNIS----------TRQIGLVGRWD--VVAFDEVATLKFAKPKELIGILKNYMESGS--FTRGDETKSSDASFVF 308 (449)
T ss_pred HHHHHHHHH----------HHHHhhhccCC--EEEEEcCCCCcCCchHHHHHHHHHHHHhCc--eeccceeeeeeeEEEE
Confidence 345555321 12345555444 89999999964 357789999999999 8887766666777888
Q ss_pred EEeecCC-C-------------CCc-chHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHH
Q 004256 271 IATYNPE-E-------------GVV-REHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQ 335 (765)
Q Consensus 271 Iat~N~~-e-------------g~l-~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (765)
++-.|.. + ..+ +.+|+|||...+ | -.+ |+.....+. ...+-...+-+++.
T Consensus 309 vGNi~~~v~~~~~~~~Lf~~lP~~~~DsAflDRiH~yi----P-GWe----ipk~~~e~~------t~~yGl~~DylsE~ 373 (449)
T TIGR02688 309 LGNVPLTSEHMVKNSDLFSPLPEFMRDSAFLDRIHGYL----P-GWE----IPKIRKEMF------SNGYGFVVDYFAEA 373 (449)
T ss_pred EcccCCcchhhcCcccccccCChhhhhhHHHHhhhccC----C-CCc----CccCCHHHc------ccCCcchHHHHHHH
Confidence 8866631 1 112 247888986653 1 111 111111110 00000000000100
Q ss_pred HHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCcC
Q 004256 336 IILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL-EGREKVNVDDLKKAVELVILPRSI 408 (765)
Q Consensus 336 il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l-~gr~~Vt~edv~~A~~lvl~hR~~ 408 (765)
+..-| .. +....+-.+..=.+..+.|-...+-++...+-.| .=...++.+|+++.+++++--|.+
T Consensus 374 l~~lR----~~----~~~~~~~~~~~l~~~~~~RD~~aV~kt~SgllKLL~P~~~~~~ee~~~~l~~Ale~Rrr 439 (449)
T TIGR02688 374 LRELR----ER----EYADIVDRHFSLSPNLNTRDVIAVKKTFSGLMKILFPHGTITKEEFTECLEPALEGRQR 439 (449)
T ss_pred HHHHH----hh----HHHHhhhhheecCCCcchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 10111 00 1111111111112334789999999999988887 445679999999999999987765
No 272
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.29 E-value=1.4e-05 Score=90.31 Aligned_cols=149 Identities=20% Similarity=0.181 Sum_probs=86.3
Q ss_pred ccCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEE-------E----cCCCc-cHHHHHH
Q 004256 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEV-------L----LPPSR-SIAMARK 625 (765)
Q Consensus 558 ~~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~-------~----~p~t~-~~~~~~~ 625 (765)
......|.|+||+||||.+.++..|+..+.-|....-.-+-.+-|+.|.+. +.. + -|+.. ..+.+..
T Consensus 389 ~~~D~~V~LLID~SGSM~~r~~~vA~~~a~iLa~aL~~~gIp~eVlGFtt~-aw~gg~~re~w~~~g~p~~PgRlN~l~h 467 (600)
T TIGR01651 389 EFRDTVVTLLIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTR-AWKGGQSREKWLKAGKPAAPGRLNDLRH 467 (600)
T ss_pred CCCCcEEEEEEECCccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEeeccc-ccccccchHHHHhcCCCCCCcccchhhh
Confidence 345677889999999999777665553333333322345678888999765 210 0 01110 1111111
Q ss_pred Hhh--cC------CCCCCChh----------HHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCC
Q 004256 626 RLE--RL------PCGGGSPL----------AHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASD 687 (765)
Q Consensus 626 ~l~--~l------~~gG~T~l----------~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~ 687 (765)
.+- .- ..+.+..+ +.||..|.+.|..... .+.++++||||.|...-+-+..
T Consensus 468 iiyk~ad~~wr~~r~~l~~mm~~~~~~eN~DGeAl~wa~~rL~~R~e----~rKiL~ViSDG~P~D~~TlsvN------- 536 (600)
T TIGR01651 468 IIYKSADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIARPE----QRRILMMISDGAPVDDSTLSVN------- 536 (600)
T ss_pred hhhhccccchhhhccchhhhhhccccccCCchHHHHHHHHHHhcCcc----cceEEEEEeCCCcCCccccccC-------
Confidence 110 00 01112222 6788888777765332 2458999999999743322111
Q ss_pred CCCCCchhHHHHHHHHHHHHHh-CCCEEEEEeCCCC
Q 004256 688 APRPSSQELKDEILEVAGKIYK-AGMSLLVIDTENK 722 (765)
Q Consensus 688 ~~~~~~~~~~~~~~~~a~~~~~-~gi~~~vig~~~~ 722 (765)
+...+...+..+.+.+.. .||.++.||+|..
T Consensus 537 ----~~~~l~~hLr~vi~~~e~~~~vel~aigIg~D 568 (600)
T TIGR01651 537 ----PGNYLERHLRAVIEEIETRSPVELLAIGIGHD 568 (600)
T ss_pred ----chhHHHHHHHHHHHHHhccCCceEEEeecccc
Confidence 113566778888888877 5899999999974
No 273
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.28 E-value=5.6e-06 Score=82.91 Aligned_cols=68 Identities=22% Similarity=0.268 Sum_probs=48.6
Q ss_pred cCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhh
Q 004256 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFED 303 (765)
Q Consensus 224 ~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~ 303 (765)
...+++|||++.|+...++.||..|++.. ....+|.++| ....+.+.+..|+.+ +.+. |+..++
T Consensus 96 ~~kviiide~~~l~~~~~~~Ll~~le~~~-------------~~~~~il~~~-~~~~l~~~i~sr~~~-~~~~-~~~~~~ 159 (188)
T TIGR00678 96 GRRVVIIEDAERMNEAAANALLKTLEEPP-------------PNTLFILITP-SPEKLLPTIRSRCQV-LPFP-PLSEEA 159 (188)
T ss_pred CeEEEEEechhhhCHHHHHHHHHHhcCCC-------------CCeEEEEEEC-ChHhChHHHHhhcEE-eeCC-CCCHHH
Confidence 45599999999999999999999997632 2345555565 336788899999864 4665 445554
Q ss_pred HHHH
Q 004256 304 RVAA 307 (765)
Q Consensus 304 r~dI 307 (765)
..++
T Consensus 160 ~~~~ 163 (188)
T TIGR00678 160 LLQW 163 (188)
T ss_pred HHHH
Confidence 3333
No 274
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.27 E-value=1.3e-06 Score=81.23 Aligned_cols=27 Identities=41% Similarity=0.453 Sum_probs=24.3
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..+++|+||+|||||++++.++..+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 367999999999999999999998864
No 275
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=98.26 E-value=6.7e-05 Score=78.35 Aligned_cols=172 Identities=20% Similarity=0.244 Sum_probs=116.5
Q ss_pred CceEEEEEeCCCCCCc-hhHHHHHHHHHHHHHhhcCC---CCeEEEEEeeCCCcEE------------------------
Q 004256 561 GALVIFVVDASGSMAL-NRMQNAKGAALKLLAESYTC---RDQVSIIPFRGDSAEV------------------------ 612 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~-~rl~~ak~a~~~ll~~~~~~---~d~v~lv~F~~~~a~~------------------------ 612 (765)
+..++||||+|-.--. .-++.++.++...|. .+.. +-+||+|+|+.. ...
T Consensus 3 pp~~~FvIDvs~~a~~~g~~~~~~~si~~~L~-~lp~~~~~~~VgiITfd~~-v~~y~l~~~~~~~q~~vv~dl~d~f~P 80 (244)
T cd01479 3 PAVYVFLIDVSYNAIKSGLLATACEALLSNLD-NLPGDDPRTRVGFITFDST-LHFFNLKSSLEQPQMMVVSDLDDPFLP 80 (244)
T ss_pred CCEEEEEEEccHHHHhhChHHHHHHHHHHHHH-hcCCCCCCeEEEEEEECCe-EEEEECCCCCCCCeEEEeeCcccccCC
Confidence 5678999999875432 246788888888886 4453 489999999765 211
Q ss_pred -----EcCCCccHHHHHHHhhcCCC------CCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCc
Q 004256 613 -----LLPPSRSIAMARKRLERLPC------GGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDP 681 (765)
Q Consensus 613 -----~~p~t~~~~~~~~~l~~l~~------gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~ 681 (765)
++|+......+...|+.|+. ..++.++.||..|..+|... + ..|++++.|.+|.|.+.-...
T Consensus 81 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~~---G----GkIi~f~s~~pt~GpG~l~~~ 153 (244)
T cd01479 81 LPDGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKET---G----GKIIVFQSSLPTLGAGKLKSR 153 (244)
T ss_pred CCcceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhc---C----CEEEEEeCCCCCcCCcccccC
Confidence 11111234556667776642 23567999999999998732 1 157888999999987542111
Q ss_pred ccCCCCCCCCCch------hHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcC
Q 004256 682 EATASDAPRPSSQ------ELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLP 744 (765)
Q Consensus 682 ~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~ 744 (765)
. ... .....+ ....-..+++.++.+.||.+-++-+...+++...+..|++.|||..++.+
T Consensus 154 ~--~~~-~~~~~~e~~~~~p~~~fY~~la~~~~~~~isvDlF~~~~~~~dla~l~~l~~~TGG~v~~y~ 219 (244)
T cd01479 154 E--DPK-LLSTDKEKQLLQPQTDFYKKLALECVKSQISVDLFLFSNQYVDVATLGCLSRLTGGQVYYYP 219 (244)
T ss_pred c--ccc-ccCchhhhhhcCcchHHHHHHHHHHHHcCeEEEEEEccCcccChhhhhhhhhhcCceEEEEC
Confidence 1 000 000000 01234567888899999999888888777888999999999999988888
No 276
>PRK04132 replication factor C small subunit; Provisional
Probab=98.25 E-value=6.6e-06 Score=98.51 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=82.6
Q ss_pred CeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHH
Q 004256 226 GVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRV 305 (765)
Q Consensus 226 GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~ 305 (765)
.|+||||++.|+...|+.|+..|++- |..+++|.++| ....+.+.|.+|+..+ .+. |+..+...
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep-------------~~~~~FILi~N-~~~kIi~tIrSRC~~i-~F~-~ls~~~i~ 695 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMF-------------SSNVRFILSCN-YSSKIIEPIQSRCAIF-RFR-PLRDEDIA 695 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCC-------------CCCeEEEEEeC-ChhhCchHHhhhceEE-eCC-CCCHHHHH
Confidence 59999999999999999999999973 22467788888 4566778999998654 565 33434322
Q ss_pred HHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHc
Q 004256 306 AAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALE 385 (765)
Q Consensus 306 dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~ 385 (765)
+.+.. +... .++.++++.+..|+..+ +. +.|..+++++.+...
T Consensus 696 ~~L~~-------------------------I~~~----Egi~i~~e~L~~Ia~~s---~G-DlR~AIn~Lq~~~~~---- 738 (846)
T PRK04132 696 KRLRY-------------------------IAEN----EGLELTEEGLQAILYIA---EG-DMRRAINILQAAAAL---- 738 (846)
T ss_pred HHHHH-------------------------HHHh----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHh----
Confidence 22211 1111 14778888888887554 23 579999999876532
Q ss_pred CCCCCCHHHHHHHH
Q 004256 386 GREKVNVDDLKKAV 399 (765)
Q Consensus 386 gr~~Vt~edv~~A~ 399 (765)
...|+.+++..++
T Consensus 739 -~~~It~~~V~~~~ 751 (846)
T PRK04132 739 -DDKITDENVFLVA 751 (846)
T ss_pred -cCCCCHHHHHHHh
Confidence 2468888887654
No 277
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=6.1e-05 Score=73.95 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=124.2
Q ss_pred eEEEEEeCCCCCC-c----hhHHHHHHHHHHHHHhhcC--CCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCC
Q 004256 563 LVIFVVDASGSMA-L----NRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGG 635 (765)
Q Consensus 563 ~vv~vvD~SgSM~-~----~rl~~ak~a~~~ll~~~~~--~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~gG~ 635 (765)
.+++|||.|-=|. | .|+..-|.++..+....+. +...||||+..+....++.-+|.+...+...+..+++.|+
T Consensus 5 atmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLsT~T~d~gkils~lh~i~~~g~ 84 (259)
T KOG2884|consen 5 ATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLSTLTSDRGKILSKLHGIQPHGK 84 (259)
T ss_pred eEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeeeeccccchHHHHHhcCCCcCCc
Confidence 5789999999996 3 7999999999888765443 5679999999996699999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEE
Q 004256 636 SPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLL 715 (765)
Q Consensus 636 T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~ 715 (765)
-++..||+.|.-.|++...+.. +..||++- |.+- .+.+.++...++++++.+|.+-
T Consensus 85 ~~~~~~i~iA~lalkhRqnk~~--~~riVvFv-GSpi---------------------~e~ekeLv~~akrlkk~~Vaid 140 (259)
T KOG2884|consen 85 ANFMTGIQIAQLALKHRQNKNQ--KQRIVVFV-GSPI---------------------EESEKELVKLAKRLKKNKVAID 140 (259)
T ss_pred ccHHHHHHHHHHHHHhhcCCCc--ceEEEEEe-cCcc---------------------hhhHHHHHHHHHHHHhcCeeEE
Confidence 9999999999888877544433 33344442 4332 1223588999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHcCCe-----EEEcCCC
Q 004256 716 VIDTENKFVSTGFAKEIARVAQGK-----YYYLPNA 746 (765)
Q Consensus 716 vig~~~~~~~~~~l~~LA~~~gG~-----y~~~~~~ 746 (765)
+|.||....+...+...-..+++. .+.++.-
T Consensus 141 ii~FGE~~~~~e~l~~fida~N~~~~gshlv~Vppg 176 (259)
T KOG2884|consen 141 IINFGEAENNTEKLFEFIDALNGKGDGSHLVSVPPG 176 (259)
T ss_pred EEEeccccccHHHHHHHHHHhcCCCCCceEEEeCCC
Confidence 999887554556677776777765 6666643
No 278
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=98.25 E-value=3e-06 Score=79.07 Aligned_cols=93 Identities=17% Similarity=0.313 Sum_probs=61.5
Q ss_pred EEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhh--cCCCCCCChhHHH
Q 004256 564 VIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLE--RLPCGGGSPLAHG 641 (765)
Q Consensus 564 vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~--~l~~gG~T~l~~a 641 (765)
++++||+||||...-+...-..+..++. .+ ..++-||.|+.. ......... ....+. .+..||||.+..+
T Consensus 1 i~vaiDtSGSis~~~l~~fl~ev~~i~~-~~--~~~v~vi~~D~~-v~~~~~~~~----~~~~~~~~~~~GgGGTdf~pv 72 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELRRFLSEVAGILR-RF--PAEVHVIQFDAE-VQDVQVFRS----LEDELRDIKLKGGGGTDFRPV 72 (126)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHH-hC--CCCEEEEEECCE-eeeeeEEec----ccccccccccCCCCCCcchHH
Confidence 5789999999986666655555666665 22 667999999877 433332222 122222 3467899999999
Q ss_pred HHHHHHHHHhhhccCCCCceEEEEEeCCCCC
Q 004256 642 LSMAVRVGLNAEKSGDVGRIMIVAITDGRAN 672 (765)
Q Consensus 642 L~~A~~~l~~~~~~~~~~~~~vvliTDG~~n 672 (765)
+..+.+. .. ...+||++|||...
T Consensus 73 f~~~~~~----~~----~~~~vi~fTDg~~~ 95 (126)
T PF09967_consen 73 FEYLEEN----RP----RPSVVIYFTDGEGW 95 (126)
T ss_pred HHHHHhc----CC----CCCEEEEEeCCCCC
Confidence 9887543 11 12367889999864
No 279
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.24 E-value=8.9e-06 Score=86.20 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=50.8
Q ss_pred CeEeccccccCCH------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCC--cchHHHhhhhcceeecC
Q 004256 226 GVLYIDEINLLDE------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV--VREHLLDRIAINLSADL 297 (765)
Q Consensus 226 GiL~lDEi~~L~~------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~--l~~~L~dRf~~~v~i~~ 297 (765)
-|+|||++|.-.+ ...+.|.++++.|-. +.+.......=.++.+||+|||..|. +++-|+..|.+. .+..
T Consensus 102 lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~-yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~-~~~~ 179 (272)
T PF12775_consen 102 LVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGF-YDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNIL-NIPY 179 (272)
T ss_dssp EEEEEETTT-S---TTS--HHHHHHHHHHHCSEE-ECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEE-E---
T ss_pred EEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCc-ccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEE-EecC
Confidence 3899999997643 345778888887652 33344444455688999999996654 677888888775 5764
Q ss_pred CCCHhhHHHHHH
Q 004256 298 PMTFEDRVAAVG 309 (765)
Q Consensus 298 p~~~e~r~dI~~ 309 (765)
|+.+....|..
T Consensus 180 -p~~~sl~~If~ 190 (272)
T PF12775_consen 180 -PSDESLNTIFS 190 (272)
T ss_dssp --TCCHHHHHHH
T ss_pred -CChHHHHHHHH
Confidence 45555555543
No 280
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.24 E-value=3.9e-06 Score=101.40 Aligned_cols=137 Identities=23% Similarity=0.243 Sum_probs=98.5
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCC--C
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLG--V 193 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~--~ 193 (765)
..|+||.|.||+|||.+..++++... ..++.++.+ .
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG------------------------------------------~kliRINLSeQT 1580 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTG------------------------------------------KKLIRINLSEQT 1580 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhc------------------------------------------CceEEeeccccc
Confidence 57999999999999999999998754 233444333 2
Q ss_pred cccceeeecccccccccCCCccc--CCceeeccCCeEeccccccCCHHHHHHHHHHHHcC-ceEEEeCCeeEEeeCceEE
Q 004256 194 TEDRLIGSVDVEESVKTGTTVFQ--PGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG-VNIVEREGISFKHPCKPLL 270 (765)
Q Consensus 194 ~e~~L~G~~d~e~~~~~g~~~~~--~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~-~~~v~r~G~~~~~p~~~~l 270 (765)
.--+|||+--+ .-.+|...+. |=+-+.-+||.++|||+|..+..+..-|-..|+.+ ...|.....+.....+|+|
T Consensus 1581 dL~DLfGsd~P--ve~~Gef~w~dapfL~amr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrV 1658 (4600)
T COG5271 1581 DLCDLFGSDLP--VEEGGEFRWMDAPFLHAMRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRV 1658 (4600)
T ss_pred hHHHHhCCCCC--cccCceeEecccHHHHHhhcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeee
Confidence 22367885211 1123444433 33334458999999999999999999999999854 4556666667777779999
Q ss_pred EEeecCCC---C--CcchHHHhhhhcceeecC
Q 004256 271 IATYNPEE---G--VVREHLLDRIAINLSADL 297 (765)
Q Consensus 271 Iat~N~~e---g--~l~~~L~dRf~~~v~i~~ 297 (765)
.||.||+. | -++..+++||.++ .++.
T Consensus 1659 FAaqNPq~qggGRKgLPkSF~nRFsvV-~~d~ 1689 (4600)
T COG5271 1659 FAAQNPQDQGGGRKGLPKSFLNRFSVV-KMDG 1689 (4600)
T ss_pred eeecCchhcCCCcccCCHHHhhhhheE-Eecc
Confidence 99999954 2 4788999999876 5763
No 281
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=8e-06 Score=88.67 Aligned_cols=154 Identities=16% Similarity=0.267 Sum_probs=88.0
Q ss_pred CCCceeechHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccc
Q 004256 93 PLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (765)
Q Consensus 93 ~f~~ivG~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (765)
.|++|+||+.+++.|.-........| .||+||.|+||+++|+.+++.+- |.....
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~-----------c~~~~~------------- 57 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKIL-----------GKSQQR------------- 57 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHc-----------CCCCCC-------------
Confidence 37789999999998854444334444 58999999999999999998752 211000
Q ss_pred cccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcC
Q 004256 172 DTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG 251 (765)
Q Consensus 172 ~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~ 251 (765)
....|..+... +..-++.-++ +.+.. .....| + .+..-|++||+++.|+...++.||..|++-
T Consensus 58 ----------~h~D~~~~~~~--~~~~i~v~~i-r~~~~-~~~~~p--~-~~~~kv~iI~~ad~m~~~a~naLLK~LEep 120 (313)
T PRK05564 58 ----------EYVDIIEFKPI--NKKSIGVDDI-RNIIE-EVNKKP--Y-EGDKKVIIIYNSEKMTEQAQNAFLKTIEEP 120 (313)
T ss_pred ----------CCCCeEEeccc--cCCCCCHHHH-HHHHH-HHhcCc--c-cCCceEEEEechhhcCHHHHHHHHHHhcCC
Confidence 00011111110 0000110000 00000 000011 1 234569999999999999999999999873
Q ss_pred ceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhh
Q 004256 252 VNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFED 303 (765)
Q Consensus 252 ~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~ 303 (765)
|....+|.+++ ....+.+.+..|.-.+ .+. |+..+.
T Consensus 121 -------------p~~t~~il~~~-~~~~ll~TI~SRc~~~-~~~-~~~~~~ 156 (313)
T PRK05564 121 -------------PKGVFIILLCE-NLEQILDTIKSRCQIY-KLN-RLSKEE 156 (313)
T ss_pred -------------CCCeEEEEEeC-ChHhCcHHHHhhceee-eCC-CcCHHH
Confidence 22334444443 3457778899998644 565 334443
No 282
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=98.22 E-value=1.8e-05 Score=82.61 Aligned_cols=182 Identities=21% Similarity=0.238 Sum_probs=111.8
Q ss_pred CceEEEEEeCCCC-CCchhHHHHHHHHHHHHHhhcC--CCCeEEEEEeeCCCcEEE------------------------
Q 004256 561 GALVIFVVDASGS-MALNRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVL------------------------ 613 (765)
Q Consensus 561 ~~~vv~vvD~SgS-M~~~rl~~ak~a~~~ll~~~~~--~~d~v~lv~F~~~~a~~~------------------------ 613 (765)
+-.++||||+|.. ....-++.++.++...|. .+. ++.+||||+|++. ..+.
T Consensus 3 pp~y~FvID~s~~av~~g~~~~~~~sl~~~l~-~l~~~~~~~vgiitfd~~-V~~y~l~~~~~~~~~~v~~dl~~~~~p~ 80 (243)
T PF04811_consen 3 PPVYVFVIDVSYEAVQSGLLQSLIESLKSALD-SLPGDERTRVGIITFDSS-VHFYNLSSSLSQPQMIVVSDLDDPFIPL 80 (243)
T ss_dssp --EEEEEEE-SHHHHHHTHHHHHHHHHHHHGC-TSSTSTT-EEEEEEESSS-EEEEETTTTSSSTEEEEEHHTTSHHSST
T ss_pred CCEEEEEEECchhhhhccHHHHHHHHHHHHHH-hccCCCCcEEEEEEeCCE-EEEEECCCCcCCCcccchHHHhhcccCC
Confidence 4678999999964 223567788888888884 677 8899999999876 3221
Q ss_pred -----cCCCccHHHHHHHhhcCC--------CCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCC
Q 004256 614 -----LPPSRSIAMARKRLERLP--------CGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTD 680 (765)
Q Consensus 614 -----~p~t~~~~~~~~~l~~l~--------~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~ 680 (765)
++.......+...|+.|+ ......++.||..|..++...... ..|++++-|.+|.|.++...
T Consensus 81 ~~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~g-----GkI~~F~s~~pt~G~Gg~l~ 155 (243)
T PF04811_consen 81 PDGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRNTG-----GKILVFTSGPPTYGPGGSLK 155 (243)
T ss_dssp SSSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS------EEEEEEESS---SSSTTSS-
T ss_pred cccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccccC-----CEEEEEeccCCCCCCCceec
Confidence 111223455666666553 223567999999999998854322 25788889999998742211
Q ss_pred cccCCCCCCCCCch------hHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHH
Q 004256 681 PEATASDAPRPSSQ------ELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAV 750 (765)
Q Consensus 681 ~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~ 750 (765)
... .+.-....++ ...+-..+++..+.+.||.+-++-+...+++...+..|+..|||..++.++.+.+.
T Consensus 156 ~~~-~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~tl~~l~~~TGG~l~~y~~f~~~~ 230 (243)
T PF04811_consen 156 KRE-DSSHYDTEKEKALLLPPANEFYKKLAEECSKQGISVDLFVFSSDYVDLATLGPLARYTGGSLYYYPNFNAER 230 (243)
T ss_dssp SBT-TSCCCCHCTTHHCHSHSSSHHHHHHHHHHHHCTEEEEEEEECSS--SHHHHTHHHHCTT-EEEEETTTTCHH
T ss_pred ccc-cccccccccchhhhccccchHHHHHHHHHHhcCCEEEEEeecCCCCCcHhHHHHHHhCceeEEEeCCCCCch
Confidence 110 0000000000 11134678888999999988877777777889999999999999999999988443
No 283
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=98.22 E-value=8.7e-06 Score=89.53 Aligned_cols=175 Identities=14% Similarity=0.141 Sum_probs=112.6
Q ss_pred cchhhhhhhccCCceEEEEEeCCCCCCchhHHH-------HHHHHHHHHHhhcCCCCeEEEEEeeCCCc-----EEEcCC
Q 004256 549 TDMRAKRMARKAGALVIFVVDASGSMALNRMQN-------AKGAALKLLAESYTCRDQVSIIPFRGDSA-----EVLLPP 616 (765)
Q Consensus 549 ~dl~~~~~~~~~~~~vv~vvD~SgSM~~~rl~~-------ak~a~~~ll~~~~~~~d~v~lv~F~~~~a-----~~~~p~ 616 (765)
..++.+.+-++....+.++||+|.||. .+|.. -+++++.+....-.-+|...+..|.+..- +++.++
T Consensus 434 ~rlf~~krp~~~Dla~TLLvD~S~St~-a~mdetrRvidl~~eaL~~la~~~qa~gd~~~~~~fts~rr~~vri~tvk~F 512 (637)
T COG4548 434 PRLFYKKRPSAHDLAFTLLVDVSASTD-AKMDETRRVIDLFHEALLVLAHGHQALGDSEDILDFTSRRRPWVRINTVKDF 512 (637)
T ss_pred cceeeecCcccccceeEEEeecccchH-HHhhhhhhhHHHHHHHHHHhhchhhhhCCHHHhcCchhhcCcceeeeeeecc
Confidence 455666665566788889999999996 44443 34444433322223456677777765522 233333
Q ss_pred Cc-cHHHHHHHhhcCCCCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchh
Q 004256 617 SR-SIAMARKRLERLPCGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQE 695 (765)
Q Consensus 617 t~-~~~~~~~~l~~l~~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~ 695 (765)
.. -.......|..|.+|--|.++.|++.|.+.|..... .+.++||+|||.||.- +...| ..
T Consensus 513 Des~~~~~~~RImALePg~ytR~G~AIR~As~kL~~rpq----~qklLivlSDGkPnd~-d~YEg-------------r~ 574 (637)
T COG4548 513 DESMGETVGPRIMALEPGYYTRDGAAIRHASAKLMERPQ----RQKLLIVLSDGKPNDF-DHYEG-------------RF 574 (637)
T ss_pred ccccccccchhheecCccccccccHHHHHHHHHHhcCcc----cceEEEEecCCCcccc-ccccc-------------cc
Confidence 32 224466778899999999999999999887765332 2458999999999852 21111 12
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHc-CCeEEEcCCCC
Q 004256 696 LKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVA-QGKYYYLPNAS 747 (765)
Q Consensus 696 ~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~-gG~y~~~~~~~ 747 (765)
..++..+++...++.||.+|.|-..... ...+-..+ ..-|..+++..
T Consensus 575 gIeDTr~AV~eaRk~Gi~VF~Vtld~ea-----~~y~p~~fgqngYa~V~~v~ 622 (637)
T COG4548 575 GIEDTREAVIEARKSGIEVFNVTLDREA-----ISYLPALFGQNGYAFVERVA 622 (637)
T ss_pred chhhHHHHHHHHHhcCceEEEEEecchh-----hhhhHHHhccCceEEccchh
Confidence 4577788888999999999999877643 22333333 34466777553
No 284
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.21 E-value=6e-06 Score=89.71 Aligned_cols=162 Identities=19% Similarity=0.117 Sum_probs=91.1
Q ss_pred ceeechHHHHHHHHhhh-cCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchh-cccccCCCCCCCCccccccccccccc
Q 004256 96 AVVGQDAIKTALLLGAI-DREIGG-IAISGRRGTAKTVMARGLHAILPPIEVV-VGSIANADPTCPDEWEDGLDEKAEYD 172 (765)
Q Consensus 96 ~ivG~~~~~~aL~l~~~-~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (765)
+++|+......+..... .....| +||+||+|||||++|.++++.+.....- ..|... |..|......
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~---------~~~~~~~~~~- 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGH---------CRSCKLIPAG- 71 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccc---------hhhhhHHhhc-
Confidence 46777777776644444 334566 9999999999999999999987521100 000000 0111110000
Q ss_pred ccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCc
Q 004256 173 TAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGV 252 (765)
Q Consensus 173 ~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~ 252 (765)
....|+.+..+-....-+..-.+........ ..+. ....-+++|||++.|..+.++.|+..+++..
T Consensus 72 ---------~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~---~~~~--~~~~kviiidead~mt~~A~nallk~lEep~ 137 (325)
T COG0470 72 ---------NHPDFLELNPSDLRKIDIIVEQVRELAEFLS---ESPL--EGGYKVVIIDEADKLTEDAANALLKTLEEPP 137 (325)
T ss_pred ---------CCCceEEecccccCCCcchHHHHHHHHHHhc---cCCC--CCCceEEEeCcHHHHhHHHHHHHHHHhccCC
Confidence 1123444333221110000000000000000 0000 2233499999999999999999999998753
Q ss_pred eEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeec
Q 004256 253 NIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (765)
Q Consensus 253 ~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~ 296 (765)
.+.++|.++| ....+.+.+.+|.-.+ .+.
T Consensus 138 -------------~~~~~il~~n-~~~~il~tI~SRc~~i-~f~ 166 (325)
T COG0470 138 -------------KNTRFILITN-DPSKILPTIRSRCQRI-RFK 166 (325)
T ss_pred -------------CCeEEEEEcC-Chhhccchhhhcceee-ecC
Confidence 4667888888 7778888999998664 454
No 285
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.19 E-value=6.3e-06 Score=80.53 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=83.1
Q ss_pred echHHHHHHHHhhhcCCCCc-EEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCC--CcccccccccccccccC
Q 004256 99 GQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP--DEWEDGLDEKAEYDTAG 175 (765)
Q Consensus 99 G~~~~~~aL~l~~~~~~~~~-VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 175 (765)
||+.++..|.-..-.....| +||+|++|+||+++|+.+++.+- |..... ..-|..|......
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll-----------~~~~~~~~c~~c~~c~~~~~~---- 65 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALL-----------CSNPNEDPCGECRSCRRIEEG---- 65 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC------------TT-CTT--SSSHHHHHHHTT----
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHc-----------CCCCCCCCCCCCHHHHHHHhc----
Confidence 78888888854433334444 89999999999999999998753 333222 1233333321110
Q ss_pred cccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEE
Q 004256 176 NLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIV 255 (765)
Q Consensus 176 ~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v 255 (765)
....|+.+...-. ..-++--++ +.+..- ....+ . .+..-|++||+++.|..+.+++||..||+-
T Consensus 66 ------~~~d~~~~~~~~~-~~~i~i~~i-r~i~~~-~~~~~--~-~~~~KviiI~~ad~l~~~a~NaLLK~LEep---- 129 (162)
T PF13177_consen 66 ------NHPDFIIIKPDKK-KKSIKIDQI-REIIEF-LSLSP--S-EGKYKVIIIDEADKLTEEAQNALLKTLEEP---- 129 (162)
T ss_dssp -------CTTEEEEETTTS-SSSBSHHHH-HHHHHH-CTSS---T-TSSSEEEEEETGGGS-HHHHHHHHHHHHST----
T ss_pred ------cCcceEEEecccc-cchhhHHHH-HHHHHH-HHHHH--h-cCCceEEEeehHhhhhHHHHHHHHHHhcCC----
Confidence 1122332221110 000110000 000000 00000 0 123459999999999999999999999985
Q ss_pred EeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceee
Q 004256 256 EREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSA 295 (765)
Q Consensus 256 ~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i 295 (765)
|.++++|-+++ ....+.+.+.+|.-.+ .+
T Consensus 130 ---------p~~~~fiL~t~-~~~~il~TI~SRc~~i-~~ 158 (162)
T PF13177_consen 130 ---------PENTYFILITN-NPSKILPTIRSRCQVI-RF 158 (162)
T ss_dssp ---------TTTEEEEEEES--GGGS-HHHHTTSEEE-EE
T ss_pred ---------CCCEEEEEEEC-ChHHChHHHHhhceEE-ec
Confidence 34566666666 6677889999998543 44
No 286
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=98.18 E-value=0.00016 Score=77.90 Aligned_cols=145 Identities=19% Similarity=0.153 Sum_probs=89.9
Q ss_pred CCCccchhHHHHhcCCchhhhhhcccccCceeEEeccchhhhhhhc----cCCceEEEEEeCCCCCCchhHHHHHHHHHH
Q 004256 513 PIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMAR----KAGALVIFVVDASGSMALNRMQNAKGAALK 588 (765)
Q Consensus 513 ~~~~id~~~Tlraaap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~----~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ 588 (765)
....||+.+|++.+.- |+ -..+....+.|.++|+|.+.++. .+...+++++|+||||...+-..||....-
T Consensus 155 ~~s~l~~~RT~r~al~----Rr-ia~~~p~~~Pi~~~DlRYr~~~~~~~P~s~AV~fc~MDvSGSM~~~~K~lak~ff~~ 229 (371)
T TIGR02877 155 LMPNLDKKRTVIEALK----RN-QLRGRPELYPITKEDLRYKTWKENEKPESNAVVIAMMDTSGSMGQFKKYIARSFFFW 229 (371)
T ss_pred CcccchHHHHHHHHHH----HH-hhccCCCccCCCcccccccccccccCccCcEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3458999999999852 22 11222345668899999976654 344556677899999986555566654333
Q ss_pred HHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeC
Q 004256 589 LLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITD 668 (765)
Q Consensus 589 ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTD 668 (765)
|-...-.+-.+|-+|--..+.....+. ....-...-+|||-.++|+.+|.+++.....+. .-+...+=.||
T Consensus 230 ly~FL~~~Y~~VeivFI~H~t~AkEVd--------EeeFF~~~EsGGT~vSSA~~l~~eII~~rYpp~-~wNIY~f~aSD 300 (371)
T TIGR02877 230 MVKFLRTKYENVEICFISHHTEAKEVT--------EEEFFHKGESGGTYCSSGYKKALEIIDERYNPA-RYNIYAFHFSD 300 (371)
T ss_pred HHHHHHhccCceEEEEEeecCeeEEcC--------HHHhcccCCCCCeEehHHHHHHHHHHHhhCChh-hCeeEEEEccc
Confidence 322122333566666555441111111 122334556899999999999999998644322 12456778999
Q ss_pred CCC
Q 004256 669 GRA 671 (765)
Q Consensus 669 G~~ 671 (765)
|..
T Consensus 301 GDN 303 (371)
T TIGR02877 301 GDN 303 (371)
T ss_pred CCC
Confidence 983
No 287
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=3.9e-06 Score=91.78 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=39.5
Q ss_pred CCCCCceeechHHHHHHH--Hhhhc-----------CCCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 91 FFPLAAVVGQDAIKTALL--LGAID-----------REIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~--l~~~~-----------~~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
+-+|+-++=....|+.+. +..+. +=..+-||+||||||||+++-||++.+.
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC
Confidence 456888888888888872 32221 1246799999999999999999999886
No 288
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=98.14 E-value=0.00023 Score=75.15 Aligned_cols=187 Identities=16% Similarity=0.111 Sum_probs=125.3
Q ss_pred CceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEE----------------------------
Q 004256 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEV---------------------------- 612 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~---------------------------- 612 (765)
+..++||||+|-. ...+..+|.++...|. .+..+.+||||+|+.. ..+
T Consensus 3 pp~~vFviDvs~~--~~el~~l~~sl~~~L~-~lP~~a~VGlITfd~~-V~~~~L~~~~~~~~~vf~g~~~~~~~~~~~~ 78 (267)
T cd01478 3 PPVFLFVVDTCMD--EEELDALKESLIMSLS-LLPPNALVGLITFGTM-VQVHELGFEECSKSYVFRGNKDYTAKQIQDM 78 (267)
T ss_pred CCEEEEEEECccC--HHHHHHHHHHHHHHHH-hCCCCCEEEEEEECCE-EEEEEcCCCcCceeeeccCCccCCHHHHHHH
Confidence 4678999999774 4568889998888886 6788999999999766 221
Q ss_pred ------------------------------EcCCCccHHHHHHHhhcCCCC---------CCChhHHHHHHHHHHHHhhh
Q 004256 613 ------------------------------LLPPSRSIAMARKRLERLPCG---------GGSPLAHGLSMAVRVGLNAE 653 (765)
Q Consensus 613 ------------------------------~~p~t~~~~~~~~~l~~l~~g---------G~T~l~~aL~~A~~~l~~~~ 653 (765)
++|+......+...|+.|+.. ....++.||..|..++....
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~ll~~~~ 158 (267)
T cd01478 79 LGLGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLLEACF 158 (267)
T ss_pred hccccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHHHHhhc
Confidence 111112334566677777532 24568999999999987542
Q ss_pred ccCCCCceEEEEEeCCCCCCCCCCCCCcccCCC-------CCCC-CCchhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCC
Q 004256 654 KSGDVGRIMIVAITDGRANISLKRSTDPEATAS-------DAPR-PSSQELKDEILEVAGKIYKAGMSLLVIDTENKFVS 725 (765)
Q Consensus 654 ~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~ 725 (765)
... -..|++++=|-+|.|.+.-.......+ +... +-.....+-...++.++.+.|+.+-++-+...+++
T Consensus 159 ~~~---gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~~~~vsvDlF~~s~d~vg 235 (267)
T cd01478 159 PNT---GARIMLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLAANGHAVDIFAGCLDQVG 235 (267)
T ss_pred CCC---CcEEEEEECCCCCCCCceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEEeccccccC
Confidence 111 125788888999988654311100000 0000 00011223445677778889998888888877889
Q ss_pred HHHHHHHHHHcCCeEEEcCCCChHHHHHH
Q 004256 726 TGFAKEIARVAQGKYYYLPNASDAVISAT 754 (765)
Q Consensus 726 ~~~l~~LA~~~gG~y~~~~~~~~~~l~~~ 754 (765)
...|..|++.|||..++.++.+...+.+-
T Consensus 236 laem~~l~~~TGG~v~~~~~f~~~~f~~s 264 (267)
T cd01478 236 LLEMKVLVNSTGGHVVLSDSFTTSIFKQS 264 (267)
T ss_pred HHHHHHHHHhcCcEEEEeCCcchHHHHHH
Confidence 99999999999999999999888665543
No 289
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=2e-05 Score=85.77 Aligned_cols=145 Identities=16% Similarity=0.146 Sum_probs=82.1
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc---cccccccCcccccccCCCeEeCCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE---KAEYDTAGNLKTQIARSPFVQIPLG 192 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~l~~~ 192 (765)
.+.+||+||+|+||+++|+.+++.+ +|........|..|.. ... + ....+..+...
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~l-----------lC~~~~~~~~Cg~C~sC~~~~~----g------~HPD~~~i~~~ 80 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAAL-----------LCEAPQGGGACGSCKGCQLLRA----G------SHPDNFVLEPE 80 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHH-----------cCCCCCCCCCCCCCHHHHHHhc----C------CCCCEEEEecc
Confidence 4459999999999999999999976 3532222334444433 211 1 11122222111
Q ss_pred CcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEE
Q 004256 193 VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIA 272 (765)
Q Consensus 193 ~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIa 272 (765)
-. ..-++--++ +.+.. .....| ..+..-|++||+++.|+...++.||..|++- |.++.+|.
T Consensus 81 ~~-~~~i~id~i-R~l~~-~~~~~~---~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-------------p~~~~fiL 141 (328)
T PRK05707 81 EA-DKTIKVDQV-RELVS-FVVQTA---QLGGRKVVLIEPAEAMNRNAANALLKSLEEP-------------SGDTVLLL 141 (328)
T ss_pred CC-CCCCCHHHH-HHHHH-HHhhcc---ccCCCeEEEECChhhCCHHHHHHHHHHHhCC-------------CCCeEEEE
Confidence 00 001110000 11100 000011 1223558999999999999999999999983 23456666
Q ss_pred eecCCCCCcchHHHhhhhcceeecCCCCHhh
Q 004256 273 TYNPEEGVVREHLLDRIAINLSADLPMTFED 303 (765)
Q Consensus 273 t~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~ 303 (765)
+|+ ....+.+-+.+|+-.+ .+. |+..++
T Consensus 142 ~t~-~~~~ll~TI~SRc~~~-~~~-~~~~~~ 169 (328)
T PRK05707 142 ISH-QPSRLLPTIKSRCQQQ-ACP-LPSNEE 169 (328)
T ss_pred EEC-ChhhCcHHHHhhceee-eCC-CcCHHH
Confidence 666 4556889999999774 565 444543
No 290
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.09 E-value=2.4e-05 Score=83.02 Aligned_cols=159 Identities=21% Similarity=0.334 Sum_probs=94.0
Q ss_pred CccchhHHHHhcCCchhhhhhcccccCceeEEeccchhhhhhhccCCceEEEEEeCCCCCCc-hhHHHHHHHHHHHHHhh
Q 004256 515 KRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMAL-NRMQNAKGAALKLLAES 593 (765)
Q Consensus 515 ~~id~~~Tlraaap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~~~~~~vv~vvD~SgSM~~-~rl~~ak~a~~~ll~~~ 593 (765)
.+||+.+|+|.+.- .|+. .| .+ .+.+.++....++|++|+||||.. ++ ..+.++.-+
T Consensus 188 ~riDlRrtmR~s~~-----------tGGe-~i---~l-~~~~pr~~~~~lvvL~DVSGSm~~ys~------~~L~l~hAl 245 (395)
T COG3552 188 KRIDLRRTMRKSMS-----------TGGE-VI---LL-VRRRPRRRKPPLVVLCDVSGSMSGYSR------IFLHLLHAL 245 (395)
T ss_pred CCCCHHHHHHHHHh-----------cCCc-ee---hh-hhcCCccCCCCeEEEEecccchhhhHH------HHHHHHHHH
Confidence 46999999998851 1111 11 11 122223346788999999999984 33 244455545
Q ss_pred cCCCCeEEEEEeeCCCcEE--EcCCCccHHHHHHHhhcCC--CCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCC
Q 004256 594 YTCRDQVSIIPFRGDSAEV--LLPPSRSIAMARKRLERLP--CGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDG 669 (765)
Q Consensus 594 ~~~~d~v~lv~F~~~~a~~--~~p~t~~~~~~~~~l~~l~--~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG 669 (765)
.+...++-+..|++.-..+ .+. .++.+.+.+.+..-- -+|||.++..+..-.+-. ...--....+|+|+|||
T Consensus 246 ~q~~~R~~~F~F~TRLt~vT~~l~-~rD~~~Al~~~~a~v~dw~ggTrig~tl~aF~~~~---~~~~L~~gA~VlilsDg 321 (395)
T COG3552 246 RQQRSRVHVFLFGTRLTRVTHMLR-ERDLEDALRRLSAQVKDWDGGTRIGNTLAAFLRRW---HGNVLSGGAVVLILSDG 321 (395)
T ss_pred HhcccceeEEEeechHHHHHHHhc-cCCHHHHHHHHHhhcccccCCcchhHHHHHHHccc---cccccCCceEEEEEecc
Confidence 5677788899998871111 111 246777766666432 479999999887533221 11111224589999999
Q ss_pred CCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 004256 670 RANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLVIDTEN 721 (765)
Q Consensus 670 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~ 721 (765)
..+.+. .+...+..++.+.--.++.+....
T Consensus 322 ~drd~~----------------------~~l~~~~~rl~rrarrlvwLNP~~ 351 (395)
T COG3552 322 LDRDDI----------------------PELVTAMARLRRRARRLVWLNPEP 351 (395)
T ss_pred cccCCc----------------------hHHHHHHHHHHHhhcceeecCCCC
Confidence 986432 234455555554444566666543
No 291
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.03 E-value=3.2e-05 Score=81.61 Aligned_cols=231 Identities=19% Similarity=0.159 Sum_probs=128.6
Q ss_pred ceeechHHHHHH-HHhh-h-cC---CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccc
Q 004256 96 AVVGQDAIKTAL-LLGA-I-DR---EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (765)
Q Consensus 96 ~ivG~~~~~~aL-~l~~-~-~~---~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (765)
..||...++.+| .+.. + .| .-.++||+|++|.|||++++.+....|.. .+++
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~---------~d~~------------- 92 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ---------SDED------------- 92 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCC---------CCCC-------------
Confidence 489999999888 2222 1 22 23569999999999999999999987630 0110
Q ss_pred cccccCcccccccCCC--eEeCCCCCcccceeeeccccccc-c-cCCC----cc-cCCceeeccCCeEeccccccC---C
Q 004256 170 EYDTAGNLKTQIARSP--FVQIPLGVTEDRLIGSVDVEESV-K-TGTT----VF-QPGLLAEAHRGVLYIDEINLL---D 237 (765)
Q Consensus 170 ~~~~~~~~~~~~~~~~--~v~l~~~~~e~~L~G~~d~e~~~-~-~g~~----~~-~~Gll~~A~~GiL~lDEi~~L---~ 237 (765)
. ...| ++..|...++.++...+--+-+. + .... .. ...+|..-.-.+|+|||++.+ +
T Consensus 93 -----~------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs 161 (302)
T PF05621_consen 93 -----A------ERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS 161 (302)
T ss_pred -----C------ccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc
Confidence 0 1234 34466777776665543111110 0 0000 00 013344444569999999986 3
Q ss_pred HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCC-CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHH
Q 004256 238 EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (765)
Q Consensus 238 ~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~-eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~ 316 (765)
..-|...+++|..=- .. ....++.+||...- .-.-+++|-+||..+ .+ | ..+.-.+-..+...|+.
T Consensus 162 ~~~qr~~Ln~LK~L~-------Ne--L~ipiV~vGt~~A~~al~~D~QLa~RF~~~-~L--p-~W~~d~ef~~LL~s~e~ 228 (302)
T PF05621_consen 162 YRKQREFLNALKFLG-------NE--LQIPIVGVGTREAYRALRTDPQLASRFEPF-EL--P-RWELDEEFRRLLASFER 228 (302)
T ss_pred HHHHHHHHHHHHHHh-------hc--cCCCeEEeccHHHHHHhccCHHHHhccCCc-cC--C-CCCCCcHHHHHHHHHHH
Confidence 445666666554211 11 12235556653211 123358999999876 34 3 23322333333333321
Q ss_pred hhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 004256 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (765)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~ 396 (765)
.. --.++.++. +.+...+|.+.+ .|. .=....++..|...|.-.|.+.|+.+++.
T Consensus 229 ~L--------------------PLr~~S~l~-~~~la~~i~~~s--~G~--iG~l~~ll~~aA~~AI~sG~E~It~~~l~ 283 (302)
T PF05621_consen 229 AL--------------------PLRKPSNLA-SPELARRIHERS--EGL--IGELSRLLNAAAIAAIRSGEERITREILD 283 (302)
T ss_pred hC--------------------CCCCCCCCC-CHHHHHHHHHHc--CCc--hHHHHHHHHHHHHHHHhcCCceecHHHHh
Confidence 11 012333432 345556665443 233 23577789999999999999999999997
Q ss_pred H
Q 004256 397 K 397 (765)
Q Consensus 397 ~ 397 (765)
.
T Consensus 284 ~ 284 (302)
T PF05621_consen 284 K 284 (302)
T ss_pred h
Confidence 5
No 292
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.03 E-value=9.5e-05 Score=82.80 Aligned_cols=165 Identities=27% Similarity=0.383 Sum_probs=128.9
Q ss_pred cCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCC--ccHHHHHHHhhc-CCCCCC
Q 004256 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPS--RSIAMARKRLER-LPCGGG 635 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t--~~~~~~~~~l~~-l~~gG~ 635 (765)
..+.+.++++|.|+||.+..+..++.+...++. .+...+.+.++.|... .....+++ .+...+...|.. +.+.|.
T Consensus 35 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 112 (399)
T COG2304 35 LVPANLTLAIDTSGSMTGALLELAKSAAIELVN-GLNPGDLLSIVTFAGS-ADVLIPPTGATNKESITAAIDQSLQAGGA 112 (399)
T ss_pred ccCcceEEEeccCCCccchhHHHHHHHHHHHhc-ccCCCCceEEEEecCC-cceecCcccccCHHHHHHHHhhhhccccc
Confidence 346889999999999987558888876666665 8899999999999995 88888888 578888888888 889999
Q ss_pred ChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEE
Q 004256 636 SPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLL 715 (765)
Q Consensus 636 T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~ 715 (765)
|.+..++..+.+.+......+. ...+.+.|||..|.+..+. .............++.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~tdg~~~~~~~d~-------------------~~~~~~~~~~~~~~i~~~ 171 (399)
T COG2304 113 TAVEASLSLAVELAAKALPRGT--LNRILLLTDGENNLGLVDP-------------------SRLSALAKLAAGKGIVLD 171 (399)
T ss_pred cHHHHHHHHHHHHhhhcCCccc--eeeEeeeccCccccCCCCH-------------------HHHHHHhcccccCceEEE
Confidence 9999999999999887655443 3367899999988654321 344555555556789999
Q ss_pred EEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCC
Q 004256 716 VIDTENKFVSTGFAKEIARVAQGKYYYLPNAS 747 (765)
Q Consensus 716 vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~ 747 (765)
++|++... +...+..++....|.+.......
T Consensus 172 ~~g~~~~~-n~~~~~~~~~~~~g~l~~~~~~~ 202 (399)
T COG2304 172 TLGLGDDV-NEDELTGIAAAANGNLAFIYLSS 202 (399)
T ss_pred EEeccccc-chhhhhhhhhccCcccccccCcc
Confidence 99998754 56677788888888877766543
No 293
>PRK06526 transposase; Provisional
Probab=98.01 E-value=8.9e-06 Score=85.28 Aligned_cols=50 Identities=20% Similarity=0.080 Sum_probs=33.2
Q ss_pred CCCCCceeechH-HHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 91 FFPLAAVVGQDA-IKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 91 ~~~f~~ivG~~~-~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
.|+|+...+-+. .+..|.....-....+|+|+||+|||||.+|.+|+..+
T Consensus 72 ~fd~~~~~~~~~~~~~~l~~~~fi~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 72 EFDFDHQRSLKRDTIAHLGTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred hccCccCCCcchHHHHHHhcCchhhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 355665555443 33333222233356789999999999999999998754
No 294
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=3.4e-05 Score=84.05 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=48.4
Q ss_pred CCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhH
Q 004256 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDR 304 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r 304 (765)
.-|++||+++.|....+|.||..|++- |.++++|.+++ ....+.+-+.+|+-.+ .+. |+..+..
T Consensus 133 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~-~~~~LLpTI~SRcq~i-~~~-~~~~~~~ 196 (342)
T PRK06964 133 ARVVVLYPAEALNVAAANALLKTLEEP-------------PPGTVFLLVSA-RIDRLLPTILSRCRQF-PMT-VPAPEAA 196 (342)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhcCC-------------CcCcEEEEEEC-ChhhCcHHHHhcCEEE-Eec-CCCHHHH
Confidence 349999999999999999999999973 34556666666 5677889999999543 566 4445443
No 295
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=4.4e-05 Score=82.44 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=46.7
Q ss_pred CCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHh
Q 004256 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFE 302 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e 302 (765)
.-|++||+++.|....+|.||..|++- |.++.+|-+++ ....+.+-+.+|+-.+ .+. |+..+
T Consensus 114 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~~~fiL~~~-~~~~lLpTIrSRCq~i-~~~-~~~~~ 175 (319)
T PRK08769 114 AQVVIVDPADAINRAACNALLKTLEEP-------------SPGRYLWLISA-QPARLPATIRSRCQRL-EFK-LPPAH 175 (319)
T ss_pred cEEEEeccHhhhCHHHHHHHHHHhhCC-------------CCCCeEEEEEC-ChhhCchHHHhhheEe-eCC-CcCHH
Confidence 359999999999999999999999984 23455555555 5566779999999765 565 33444
No 296
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=97.93 E-value=0.001 Score=66.49 Aligned_cols=175 Identities=18% Similarity=0.215 Sum_probs=99.9
Q ss_pred CceEEEEEeCCCCCCchhHH-HHHHHHHHH----HHhhcC----CCCeEEEEEeeCC-CcEEEcCCCc-----cHHHHHH
Q 004256 561 GALVIFVVDASGSMALNRMQ-NAKGAALKL----LAESYT----CRDQVSIIPFRGD-SAEVLLPPSR-----SIAMARK 625 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~~rl~-~ak~a~~~l----l~~~~~----~~d~v~lv~F~~~-~a~~~~p~t~-----~~~~~~~ 625 (765)
...++|.||+|+||...-+. +..+.+..| +..++. .+-.|+++.|++. ...+++|-|. +...+-.
T Consensus 3 dlaLvLavDvS~SVD~~E~~lQ~~G~A~Al~dp~V~~Ai~~g~~g~Iav~~~eWsg~~~q~~~v~Wt~i~~~~da~a~A~ 82 (205)
T PF06707_consen 3 DLALVLAVDVSGSVDADEYRLQREGYAAALRDPEVIAAILSGPIGRIAVAVVEWSGPGRQRVVVPWTRIDSPADAEAFAA 82 (205)
T ss_pred cceeeeeeeccCCCCHHHHHHHHHHHHHHHCCHHHHHHHhcCCCCeEEEEEEEecCCCCceEEeCCEEeCCHHHHHHHHH
Confidence 35789999999999853222 122222222 112222 3446667777773 3567788874 4555566
Q ss_pred HhhcCC--CCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHH
Q 004256 626 RLERLP--CGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEV 703 (765)
Q Consensus 626 ~l~~l~--~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (765)
.|...+ ..++|.++.||..+..++.+.... ..+.+|=+-.||..|.|... . ..+
T Consensus 83 ~l~~~~r~~~~~Taig~Al~~a~~ll~~~~~~--~~RrVIDvSGDG~~N~G~~p--------------------~--~~a 138 (205)
T PF06707_consen 83 RLRAAPRRFGGRTAIGSALDFAAALLAQNPFE--CWRRVIDVSGDGPNNQGPRP--------------------V--TSA 138 (205)
T ss_pred HHHhCCCCCCCCchHHHHHHHHHHHHHhCCCC--CceEEEEECCCCCCCCCCCc--------------------c--HHH
Confidence 666664 346699999999999998865432 23667778899999976321 0 122
Q ss_pred HHHHHhCCCEEEEEeCCCCCC-C-HHHHHHH-HHHcCCe-EEEcCCCChHHHHHHHHHHH
Q 004256 704 AGKIYKAGMSLLVIDTENKFV-S-TGFAKEI-ARVAQGK-YYYLPNASDAVISATTKDAL 759 (765)
Q Consensus 704 a~~~~~~gi~~~vig~~~~~~-~-~~~l~~L-A~~~gG~-y~~~~~~~~~~l~~~~~~~~ 759 (765)
-..+...||.|-.+-++.... . ..+-.-- ....||. .|.++-.+-+...++++.-+
T Consensus 139 rd~~~~~GitINgL~I~~~~~~~~~~L~~yy~~~VIgGpgAFV~~a~~~~df~~AirrKL 198 (205)
T PF06707_consen 139 RDAAVAAGITINGLAILDDDPFGGADLDAYYRRCVIGGPGAFVETARGFEDFAEAIRRKL 198 (205)
T ss_pred HHHHHHCCeEEeeeEecCCCCCccccHHHHHhhhcccCCCceEEEcCCHHHHHHHHHHHH
Confidence 233446788776555543321 0 0111111 1223443 34555555666666666544
No 297
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=7.4e-05 Score=80.86 Aligned_cols=143 Identities=15% Similarity=0.135 Sum_probs=81.3
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccc---cccccccccCcccccccCCCeEeCCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL---DEKAEYDTAGNLKTQIARSPFVQIPLG 192 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~l~~~ 192 (765)
.+..||.||.|+||+++|+.+++.+ +|........|..| ...... ...-|..+.+.
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~l-----------lC~~~~~~~~Cg~C~sC~~~~~g----------~HPD~~~i~p~ 82 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWL-----------MCQTPQGDQPCGQCHSCHLFQAG----------NHPDFHILEPI 82 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHH-----------cCCCCCCCCCCCCCHHHHHHhcC----------CCCCEEEEccc
Confidence 3558899999999999999999976 45332223344444 332211 11123322211
Q ss_pred CcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEE
Q 004256 193 VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIA 272 (765)
Q Consensus 193 ~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIa 272 (765)
+..-+| +|--+.+... ....| ......|++||+++.|....++.||..|++- |.++.+|-
T Consensus 83 --~~~~I~-id~iR~l~~~-~~~~~---~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP-------------p~~~~fiL 142 (325)
T PRK06871 83 --DNKDIG-VDQVREINEK-VSQHA---QQGGNKVVYIQGAERLTEAAANALLKTLEEP-------------RPNTYFLL 142 (325)
T ss_pred --cCCCCC-HHHHHHHHHH-Hhhcc---ccCCceEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEE
Confidence 011111 1100111000 00001 0123459999999999999999999999984 33455555
Q ss_pred eecCCCCCcchHHHhhhhcceeecCCCCHh
Q 004256 273 TYNPEEGVVREHLLDRIAINLSADLPMTFE 302 (765)
Q Consensus 273 t~N~~eg~l~~~L~dRf~~~v~i~~p~~~e 302 (765)
+++ ....+.+-+.+|.-.+ .+. |+..+
T Consensus 143 ~t~-~~~~llpTI~SRC~~~-~~~-~~~~~ 169 (325)
T PRK06871 143 QAD-LSAALLPTIYSRCQTW-LIH-PPEEQ 169 (325)
T ss_pred EEC-ChHhCchHHHhhceEE-eCC-CCCHH
Confidence 555 5567778899998665 565 34444
No 298
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=97.90 E-value=0.00069 Score=74.50 Aligned_cols=201 Identities=13% Similarity=0.126 Sum_probs=122.7
Q ss_pred ccCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHh--hcCCCCeEEEEEeeCC---------------------------
Q 004256 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGD--------------------------- 608 (765)
Q Consensus 558 ~~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~--~~~~~d~v~lv~F~~~--------------------------- 608 (765)
..-+.+++|++|.|+||. +-++..|.....|+.. .+...-|+|+=.|-+.
T Consensus 96 ~~yPvDLYyLMDlS~SM~-ddl~~lk~lg~~L~~~m~~it~n~rlGfGsFVDK~v~P~~~t~p~~l~~PC~~~~~~c~p~ 174 (423)
T smart00187 96 EDYPVDLYYLMDLSYSMK-DDLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTRPEKLENPCPNYNLTCEPP 174 (423)
T ss_pred ccCccceEEEEeCCccHH-HHHHHHHHHHHHHHHHHHhcccCceeeEEEeecCccCCcccCCHHHhcCCCcCCCCCcCCC
Confidence 445899999999999998 5555556555555432 3557778998777443
Q ss_pred -CcEEEcCCCccHHHHHHHhhcCCCCCCChhH-HHHHHHHHHH---HhhhccCCCCceEEEEEeCCCCCCCCCCCCCccc
Q 004256 609 -SAEVLLPPSRSIAMARKRLERLPCGGGSPLA-HGLSMAVRVG---LNAEKSGDVGRIMIVAITDGRANISLKRSTDPEA 683 (765)
Q Consensus 609 -~a~~~~p~t~~~~~~~~~l~~l~~gG~T~l~-~aL~~A~~~l---~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~ 683 (765)
+-.-++++|.+.....+.+.....+|+-+-. .|+..-++.+ .+-..+. ..+.+||+.||+......++..+.-.
T Consensus 175 f~f~~~L~LT~~~~~F~~~V~~~~iSgN~D~PEgG~DAimQaaVC~~~IGWR~-~a~rllv~~TDa~fH~AGDGkLaGIv 253 (423)
T smart00187 175 YGFKHVLSLTDDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAVCTEQIGWRE-DARRLLVFSTDAGFHFAGDGKLAGIV 253 (423)
T ss_pred cceeeeccCCCCHHHHHHHHhhceeecCCcCCcccHHHHHHHHhhccccccCC-CceEEEEEEcCCCccccCCcceeeEe
Confidence 1124588899999999999988876654422 2222222222 1122222 23568999999877654332211000
Q ss_pred CCCCC---------CCC-CchhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHH
Q 004256 684 TASDA---------PRP-SSQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISA 753 (765)
Q Consensus 684 ~~~~~---------~~~-~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~ 753 (765)
.|+. ... +...-..-+-++++++.+.+|..+.-=++. ....-++|++...|..+-.=..+...|..
T Consensus 254 -~PNDg~CHL~~~g~Yt~s~~~DYPSi~ql~~kL~e~nI~~IFAVT~~---~~~~Y~~Ls~lipgs~vg~Ls~DSsNIv~ 329 (423)
T smart00187 254 -QPNDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAENNINPIFAVTKK---QVSLYKELSALIPGSSVGVLSEDSSNVVE 329 (423)
T ss_pred -cCCCCcceeCCCCCcCccCcCCCCCHHHHHHHHHhcCceEEEEEccc---chhHHHHHHHhcCcceeeecccCcchHHH
Confidence 0000 000 000001245778888999998655444444 24578999999988877655566778999
Q ss_pred HHHHHHHhhhc
Q 004256 754 TTKDALSALKN 764 (765)
Q Consensus 754 ~~~~~~~~~~~ 764 (765)
+++.+-.++.+
T Consensus 330 LI~~aY~~i~S 340 (423)
T smart00187 330 LIKDAYNKISS 340 (423)
T ss_pred HHHHHHHhhce
Confidence 99998877654
No 299
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=97.89 E-value=0.00055 Score=71.37 Aligned_cols=146 Identities=16% Similarity=0.212 Sum_probs=102.6
Q ss_pred CceEEEEEeCCCCCC---------------chhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCC-----cEEEcC-----
Q 004256 561 GALVIFVVDASGSMA---------------LNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDS-----AEVLLP----- 615 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~---------------~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~-----a~~~~p----- 615 (765)
..++++.||.|+|-. .+..+.|-.++..++. .|..+..+-+..|+... .....|
T Consensus 31 ~~nl~vaIDfT~SNg~p~~~~SLHy~~~~~~N~Yq~aI~~vg~il~-~yD~D~~ip~~GFGa~~~~~~~v~~~f~~~~~~ 109 (254)
T cd01459 31 ESNLIVAIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQ-PYDSDKLIPAFGFGAIVTKDQSVFSFFPGYSES 109 (254)
T ss_pred eeeEEEEEEeCCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHH-hcCCCCceeeEeecccCCCCCccccccCCCCCC
Confidence 468999999999962 1456666667777776 78888999999998751 111121
Q ss_pred -CCccHHH----HHHHhhcCCCCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCC
Q 004256 616 -PSRSIAM----ARKRLERLPCGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPR 690 (765)
Q Consensus 616 -~t~~~~~----~~~~l~~l~~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~ 690 (765)
.....+. -+..+..+...|.|+++..+..|.+...+....+ .--++++||||.-+.
T Consensus 110 p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~--~Y~VLLIiTDG~i~D----------------- 170 (254)
T cd01459 110 PECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQS--KYHILLIITDGEITD----------------- 170 (254)
T ss_pred CcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCC--ceEEEEEECCCCccc-----------------
Confidence 0012222 3345667788899999999999998876543322 234688999998642
Q ss_pred CCchhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHH
Q 004256 691 PSSQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIAR 734 (765)
Q Consensus 691 ~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~ 734 (765)
.++..++...+.+..+.+++||+|++ +...|++|-.
T Consensus 171 ------~~~t~~aIv~AS~~PlSIiiVGVGd~--~F~~M~~LD~ 206 (254)
T cd01459 171 ------MNETIKAIVEASKYPLSIVIVGVGDG--PFDAMERLDD 206 (254)
T ss_pred ------HHHHHHHHHHHhcCCeEEEEEEeCCC--ChHHHHHhcC
Confidence 14556666667778999999999986 6788999876
No 300
>PRK05325 hypothetical protein; Provisional
Probab=97.89 E-value=0.001 Score=73.13 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=70.7
Q ss_pred chhhhhhhc----cCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHH
Q 004256 550 DMRAKRMAR----KAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARK 625 (765)
Q Consensus 550 dl~~~~~~~----~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~ 625 (765)
|+|.+.++. .+...+++++|+||||...+-..||....-|-.....+-.+|-+|.-.++....-+. . .
T Consensus 207 DlRYr~~~~~~~p~s~AVmfclMDvSGSM~~~~K~lakrff~lly~fL~r~Y~~vEvvFI~H~t~AkEVd------E--e 278 (401)
T PRK05325 207 DLRYRNWEKVPKPESQAVMFCLMDVSGSMDEAEKDLAKRFFFLLYLFLRRKYENVEVVFIRHHTEAKEVD------E--E 278 (401)
T ss_pred cccccccccccCccCcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCceeEcC------H--H
Confidence 898876554 344556677899999997655566654333322222344667666555441111221 1 2
Q ss_pred HhhcCCCCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCC
Q 004256 626 RLERLPCGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANI 673 (765)
Q Consensus 626 ~l~~l~~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~ 673 (765)
..-...-+|||-+++|+.++.+++....... .-+..++=.|||. |.
T Consensus 279 eFF~~~esGGT~vSSA~~l~~eIi~~rYpp~-~wNIY~f~aSDGD-Nw 324 (401)
T PRK05325 279 EFFYSRESGGTIVSSAYKLALEIIEERYPPA-EWNIYAFQASDGD-NW 324 (401)
T ss_pred HccccCCCCCeEehHHHHHHHHHHHhhCCHh-HCeeEEEEcccCC-Cc
Confidence 2334566899999999999999998643322 1245678899998 44
No 301
>KOG3768 consensus DEAD box RNA helicase [General function prediction only]
Probab=97.88 E-value=9.9e-05 Score=81.75 Aligned_cols=186 Identities=19% Similarity=0.279 Sum_probs=104.9
Q ss_pred eEEEEEeCCCCCCc------hhHHHHHHHHHHHHHhhc----CCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCC
Q 004256 563 LVIFVVDASGSMAL------NRMQNAKGAALKLLAESY----TCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPC 632 (765)
Q Consensus 563 ~vv~vvD~SgSM~~------~rl~~ak~a~~~ll~~~~----~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~ 632 (765)
.++|+||+||||.. .-++.||+++..|+...- ..+|+.-|++|..-.-.+-+........+.+.|..|.+
T Consensus 3 i~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk~~~~~~~a~~~~eik~l~a 82 (888)
T KOG3768|consen 3 IFLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVKVACEKLGAVVIEEIKKLHA 82 (888)
T ss_pred eEEEEEecccchhhhccCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhhhHHhhcccHHHHHHHhhcC
Confidence 46799999999952 578999999999997332 24589999999655111111122344556666777775
Q ss_pred C-CCChhHHHHHHHHHHHHhhhc--------cCC----CCceEEEEEeCCCC---CCCCCCCCCcccCCCCCCCCCchhH
Q 004256 633 G-GGSPLAHGLSMAVRVGLNAEK--------SGD----VGRIMIVAITDGRA---NISLKRSTDPEATASDAPRPSSQEL 696 (765)
Q Consensus 633 g-G~T~l~~aL~~A~~~l~~~~~--------~~~----~~~~~vvliTDG~~---n~~~~~~~~~~~~~~~~~~~~~~~~ 696 (765)
. |.+-+.+++..|+++|.-.+- .++ -...+||+||||.- ..|+....--++ ++.-|+.+-.
T Consensus 83 ~~~s~~~~~~~t~AFdlLnlnR~qtGID~yGqGR~pf~lEP~~iI~iTDG~r~s~~~GV~~e~~Lpl---~~p~pGse~T 159 (888)
T KOG3768|consen 83 PYGSCQLHHAITEAFDLLNLNRVQTGIDGYGQGRLPFNLEPVTIILITDGGRYSGVAGVPIEFRLPL---DPPFPGSEMT 159 (888)
T ss_pred ccchhhhhHHHHHHhhhhhhhhhhhcccccccccCccccCceEEEEEecCCccccccCCceeEEecc---CCCCCccccc
Confidence 4 566788888889998753321 111 11458899999932 222211100011 1112222211
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeC-CC----------CCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHHHH
Q 004256 697 KDEILEVAGKIYKAGMSLLVIDT-EN----------KFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDAL 759 (765)
Q Consensus 697 ~~~~~~~a~~~~~~gi~~~vig~-~~----------~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~~~ 759 (765)
.+...+-++ ...+|+-. |. -.++....+.+.+.+||+.|.+- +...|..-+....
T Consensus 160 -kepFRWDQr-----lftlVlRiPgt~~~~~~qlt~Vp~Dds~IermCevTGGRSysV~--Spr~lnqciesLv 225 (888)
T KOG3768|consen 160 -KEPFRWDQR-----LFTLVLRIPGTPYPTISQLTAVPIDDSVIERMCEVTGGRSYSVV--SPRQLNQCIESLV 225 (888)
T ss_pred -cccchhhhh-----hheeeEecCCCCCccHhhhcCCCCCchhhHHhhhhcCCceeeee--CHHHHHHHHHHHH
Confidence 111222222 22233321 11 12366789999999999999885 3444444444333
No 302
>PRK08116 hypothetical protein; Validated
Probab=97.85 E-value=3e-05 Score=82.07 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=38.6
Q ss_pred cCCeEecccc--ccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCC----cchHHHhhh
Q 004256 224 HRGVLYIDEI--NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV----VREHLLDRI 289 (765)
Q Consensus 224 ~~GiL~lDEi--~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~----l~~~L~dRf 289 (765)
+..+|+|||+ +...+..+..|+.+++.+. +. ...+|.|||....+ +...+++|+
T Consensus 178 ~~dlLviDDlg~e~~t~~~~~~l~~iin~r~----~~--------~~~~IiTsN~~~~eL~~~~~~ri~sRl 237 (268)
T PRK08116 178 NADLLILDDLGAERDTEWAREKVYNIIDSRY----RK--------GLPTIVTTNLSLEELKNQYGKRIYDRI 237 (268)
T ss_pred CCCEEEEecccCCCCCHHHHHHHHHHHHHHH----HC--------CCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 3459999999 5567888999999998753 11 12477888865443 456889996
No 303
>PRK08181 transposase; Validated
Probab=97.85 E-value=4.8e-05 Score=80.26 Aligned_cols=50 Identities=20% Similarity=0.173 Sum_probs=33.4
Q ss_pred CCCCCceeechH-HHHHHHHh-hhcCCCCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 91 FFPLAAVVGQDA-IKTALLLG-AIDREIGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 91 ~~~f~~ivG~~~-~~~aL~l~-~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
.|+|....+.+. ...++..+ .......+|+|+||+|||||.||.+|+..+
T Consensus 79 ~fd~~~~~~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 79 SFDFEAVPMVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred hCCccCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHH
Confidence 355555555443 34444322 233355789999999999999999998764
No 304
>PRK12377 putative replication protein; Provisional
Probab=97.84 E-value=2.6e-05 Score=81.33 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=37.0
Q ss_pred CCeEecccc--ccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC----CcchHHHhhhh
Q 004256 225 RGVLYIDEI--NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIA 290 (765)
Q Consensus 225 ~GiL~lDEi--~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg----~l~~~L~dRf~ 290 (765)
--+|+|||+ ..++...+..|..+++.+.. ...-+|.|||.... .+...++||+-
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~------------~~~ptiitSNl~~~~l~~~~~~ri~dRl~ 223 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTA------------SMRSVGMLTNLNHEAMSTLLGERVMDRMT 223 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHh------------cCCCEEEEcCCCHHHHHHHhhHHHHHHHh
Confidence 459999999 55677888999999987641 01234677886432 34556788874
No 305
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.82 E-value=5.9e-05 Score=79.04 Aligned_cols=149 Identities=16% Similarity=0.086 Sum_probs=86.8
Q ss_pred CCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccc
Q 004256 90 QFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (765)
++--+.+++++++++..+.--.-.++..|+|+|||||||||+...+.+..+.. + + .
T Consensus 36 rP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~-------~----~-~------------ 91 (360)
T KOG0990|consen 36 RPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYS-------P----H-P------------ 91 (360)
T ss_pred CCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcC-------C----C-C------------
Confidence 34445678999999888843333445668999999999999999999987752 1 0 0
Q ss_pred cccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceee-ccCCeEeccccccCCHHHHHHHHHHH
Q 004256 170 EYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLLDEGISNLLLNVL 248 (765)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~-A~~GiL~lDEi~~L~~~~q~~Ll~~l 248 (765)
.....+...++.++=.+.+- ..+..-....++-.+.. +---.++|||.+.+....|++|.+++
T Consensus 92 --------------~~~m~lelnaSd~rgid~vr--~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRvi 155 (360)
T KOG0990|consen 92 --------------TTSMLLELNASDDRGIDPVR--QQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVI 155 (360)
T ss_pred --------------chhHHHHhhccCccCCcchH--HHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHH
Confidence 00001112222222222110 00000000111122222 12236899999999999999999988
Q ss_pred HcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcc
Q 004256 249 TEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAIN 292 (765)
Q Consensus 249 ~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~ 292 (765)
+.-. .+++++--+| -.....+++..||.-+
T Consensus 156 ek~t-------------~n~rF~ii~n-~~~ki~pa~qsRctrf 185 (360)
T KOG0990|consen 156 EKYT-------------ANTRFATISN-PPQKIHPAQQSRCTRF 185 (360)
T ss_pred HHhc-------------cceEEEEecc-ChhhcCchhhcccccC
Confidence 7644 2445554445 3455678888888654
No 306
>PLN00162 transport protein sec23; Provisional
Probab=97.79 E-value=0.0013 Score=79.52 Aligned_cols=196 Identities=18% Similarity=0.177 Sum_probs=128.9
Q ss_pred ccCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEE------------Ec-----------
Q 004256 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEV------------LL----------- 614 (765)
Q Consensus 558 ~~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~------------~~----------- 614 (765)
...+-.++||||+| |....++..|.++...|. .+.++.+||||+|+.. ..+ ++
T Consensus 121 ~~~pp~fvFvID~s--~~~~~l~~lk~sl~~~L~-~LP~~a~VGlITF~s~-V~~~~L~~~~~~~~~Vf~g~k~~t~~~l 196 (761)
T PLN00162 121 APSPPVFVFVVDTC--MIEEELGALKSALLQAIA-LLPENALVGLITFGTH-VHVHELGFSECSKSYVFRGNKEVSKDQI 196 (761)
T ss_pred CCCCcEEEEEEecc--hhHHHHHHHHHHHHHHHH-hCCCCCEEEEEEECCE-EEEEEcCCCCCcceEEecCCccCCHHHH
Confidence 33467899999998 445678888888888775 6788999999999866 221 01
Q ss_pred -----------------------------------CCCccHHHHHHHhhcCCCC------C---CChhHHHHHHHHHHHH
Q 004256 615 -----------------------------------PPSRSIAMARKRLERLPCG------G---GSPLAHGLSMAVRVGL 650 (765)
Q Consensus 615 -----------------------------------p~t~~~~~~~~~l~~l~~g------G---~T~l~~aL~~A~~~l~ 650 (765)
|+......+...|+.|+.. + ...++.||..|..+|.
T Consensus 197 ~~~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL~ 276 (761)
T PLN00162 197 LEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLG 276 (761)
T ss_pred HHHhccccccccccccccccccccccCCCccceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHHh
Confidence 1111223455566666432 2 3568999999999887
Q ss_pred hhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCC-----C---CCCCCchhHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 004256 651 NAEKSGDVGRIMIVAITDGRANISLKRSTDPEATAS-----D---APRPSSQELKDEILEVAGKIYKAGMSLLVIDTENK 722 (765)
Q Consensus 651 ~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~ 722 (765)
.... .. ...|++++-|-+|.|.+.-.+.....+ | ...+-......-...++.++.+.|+.+-++-+...
T Consensus 277 ~~~~-~~--gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF~~s~d 353 (761)
T PLN00162 277 ACVP-GT--GARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLD 353 (761)
T ss_pred hccC-CC--ceEEEEEeCCCCCCCCceeecccccccccCccccccchhhhcchHHHHHHHHHHHHHHcCceEEEEEcccc
Confidence 5422 11 124677777999988654211110000 0 00000012223446678888889999988888888
Q ss_pred CCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHHHHH
Q 004256 723 FVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDALS 760 (765)
Q Consensus 723 ~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~~~~ 760 (765)
+++...|+.+++.|||..+.-++.+...+..-++..+.
T Consensus 354 qvglaem~~l~~~TGG~v~~~~sF~~~~f~~~l~r~~~ 391 (761)
T PLN00162 354 QVGVAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFE 391 (761)
T ss_pred ccCHHHHhhhHhhcCcEEEEeCCcChHHHHHHHHHHhc
Confidence 88999999999999999999999988766665555544
No 307
>PF01882 DUF58: Protein of unknown function DUF58; InterPro: IPR002881 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain (see IPR002035 from INTERPRO).
Probab=97.78 E-value=2.4e-05 Score=67.76 Aligned_cols=75 Identities=25% Similarity=0.422 Sum_probs=62.0
Q ss_pred cccCCCCCCCCccchhHHHHhcCCchhhhhhcccccCceeEEeccchhhhhhhccCCceEEEEEeCCCCCCc-----hhH
Q 004256 505 IKPMLPKGPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMAL-----NRM 579 (765)
Q Consensus 505 ~r~~~~~~~~~~id~~~Tlraaap~q~~r~~~~~~~~~~~~i~~~dl~~~~~~~~~~~~vv~vvD~SgSM~~-----~rl 579 (765)
+|+|.|+++.++|||.+|.|.. .+.+|.++......++|++|.++||.. ..+
T Consensus 7 lR~Y~~GD~~r~I~Wk~sAr~~-----------------------~l~vk~~~~~~~~~~~i~ld~~~~~~~~~~~~~~~ 63 (86)
T PF01882_consen 7 LRPYQPGDPLRRIHWKASARTG-----------------------ELMVKEFEEERSQPVWIVLDLSPSMYFGSNGRSKF 63 (86)
T ss_pred ccCCCCCCchHHhhHHHHhCCC-----------------------CcEEEEeecccCCcEEEEEECCCccccCcCCCCHH
Confidence 6899999999999999888644 355566666677999999999999963 678
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEE
Q 004256 580 QNAKGAALKLLAESYTCRDQVSI 602 (765)
Q Consensus 580 ~~ak~a~~~ll~~~~~~~d~v~l 602 (765)
+.+-..+..++..+...++.|+|
T Consensus 64 e~~l~~a~~l~~~~~~~g~~v~L 86 (86)
T PF01882_consen 64 ERALSAAASLANQALRQGDPVGL 86 (86)
T ss_pred HHHHHHHHHHHHHHHhcCCcccC
Confidence 88888888888888888888875
No 308
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.78 E-value=0.00021 Score=73.73 Aligned_cols=135 Identities=21% Similarity=0.189 Sum_probs=79.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCcc
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e 195 (765)
..+..++||.|||||..++.++..+.+.-+ .|||.+. .+
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~----vfnc~~~-------------------------------------~~ 70 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVV----VFNCSEQ-------------------------------------MD 70 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EE----EEETTSS-------------------------------------S-
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEE----Eeccccc-------------------------------------cc
Confidence 455678999999999999999999875221 1344322 00
Q ss_pred cceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHH-------HHHHHcCceEEEeCCeeEEeeCce
Q 004256 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL-------LNVLTEGVNIVEREGISFKHPCKP 268 (765)
Q Consensus 196 ~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~L-------l~~l~~~~~~v~r~G~~~~~p~~~ 268 (765)
...++.+ ..|+. ..|.++++||+|+|+.+++..+ .+++..+...+.-.|.......++
T Consensus 71 ~~~l~ri-------------l~G~~--~~GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~ 135 (231)
T PF12774_consen 71 YQSLSRI-------------LKGLA--QSGAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNC 135 (231)
T ss_dssp HHHHHHH-------------HHHHH--HHT-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-
T ss_pred HHHHHHH-------------HHHHh--hcCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccce
Confidence 0111110 11222 1366899999999999876655 445556666677788888888889
Q ss_pred EEEEeecCCC---CCcchHHHhhhhcceeecCCCCHhhHHHHH
Q 004256 269 LLIATYNPEE---GVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (765)
Q Consensus 269 ~lIat~N~~e---g~l~~~L~dRf~~~v~i~~p~~~e~r~dI~ 308 (765)
.+..|+||.- .++++.|..-|-.+ .+.. |+...-.++.
T Consensus 136 ~iFiT~np~y~gr~~LP~nLk~lFRpv-am~~-PD~~~I~ei~ 176 (231)
T PF12774_consen 136 GIFITMNPGYAGRSELPENLKALFRPV-AMMV-PDLSLIAEIL 176 (231)
T ss_dssp EEEEEE-B-CCCC--S-HHHCTTEEEE-E--S---HHHHHHHH
T ss_pred eEEEeeccccCCcccCCHhHHHHhhee-EEeC-CCHHHHHHHH
Confidence 9999999853 46888887777554 4553 4555444443
No 309
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=97.76 E-value=0.00061 Score=75.63 Aligned_cols=212 Identities=16% Similarity=0.148 Sum_probs=122.9
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCc
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~ 194 (765)
.+-+++=.||+|||||.+=+-| +|. .+..-....|
T Consensus 207 ~N~NliELgPrGTGKS~vy~ei---Sp~------------------------------------------~~liSGG~~T 241 (457)
T PF13337_consen 207 RNYNLIELGPRGTGKSYVYKEI---SPY------------------------------------------GILISGGQVT 241 (457)
T ss_pred cccceEEEcCCCCCceeehhhc---Ccc------------------------------------------cEEEECCCcc
Confidence 4578999999999999985443 321 1111112256
Q ss_pred ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCC---HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEE
Q 004256 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD---EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLI 271 (765)
Q Consensus 195 e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~---~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lI 271 (765)
...||.. ....+.|++..-+ ++.+|||..+. ++....|-+.|++|. +.|.+.+....+.++++
T Consensus 242 ~A~LFyn----------~~~~~~GlV~~~D--~VafDEv~~i~f~d~d~i~imK~YMesG~--fsRG~~~i~a~as~vf~ 307 (457)
T PF13337_consen 242 VAKLFYN----------MSTGQIGLVGRWD--VVAFDEVAGIKFKDKDEIQIMKDYMESGS--FSRGKEEINADASMVFV 307 (457)
T ss_pred hHHheee----------ccCCcceeeeecc--EEEEEeccCcccCChHHHHHHHHHHhccc--eeecccccccceeEEEE
Confidence 6677774 2334678886655 89999998874 666699999999999 88877665555666666
Q ss_pred EeecCC-C-------------CCc-chHHHhhhhcceee-cCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHH
Q 004256 272 ATYNPE-E-------------GVV-REHLLDRIAINLSA-DLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQ 335 (765)
Q Consensus 272 at~N~~-e-------------g~l-~~~L~dRf~~~v~i-~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (765)
|-.|.. + ..+ +.+|+|||...+.= ++|..+. ++ |..+ +-...+-.+.-
T Consensus 308 GNi~~~v~~~~~~~~lf~~lP~~~~DsAflDRiH~~iPGWeiPk~~~---e~------~t~~-------~gl~~Dy~aE~ 371 (457)
T PF13337_consen 308 GNINQSVENMLKTSHLFEPLPEEMRDSAFLDRIHGYIPGWEIPKIRP---EM------FTNG-------YGLIVDYFAEI 371 (457)
T ss_pred cCcCCcchhccccchhhhhcCHHHHHHHHHhHhheeccCccccccCH---HH------ccCC-------ceeeHHHHHHH
Confidence 655521 1 012 35788998776421 1232211 11 1110 10000000000
Q ss_pred HHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCCcCC
Q 004256 336 IILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALE-GREKVNVDDLKKAVELVILPRSII 409 (765)
Q Consensus 336 il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~-gr~~Vt~edv~~A~~lvl~hR~~~ 409 (765)
+..-+ .... ...+..+..-.+..+.|-...+-+++.++-.|- =...++.+++++.+++++--|.+.
T Consensus 372 l~~LR----~~~~----~~~~~~~~~lg~~~~~RD~~AV~kt~SgllKLL~P~~~~~~ee~~~~l~~A~e~R~rV 438 (457)
T PF13337_consen 372 LHELR----KQSY----SDAVDKYFKLGSNLSQRDTKAVKKTVSGLLKLLFPHGEFTKEELEECLRPALEMRRRV 438 (457)
T ss_pred HHHHH----HHHH----HHHHHhhEeeCCCcchhhHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 00000 0001 111111111123346788888989988887754 357899999999999999887653
No 310
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00026 Score=77.02 Aligned_cols=160 Identities=16% Similarity=0.145 Sum_probs=85.4
Q ss_pred chHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCC-Ccccccccc---cccccccC
Q 004256 100 QDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP-DEWEDGLDE---KAEYDTAG 175 (765)
Q Consensus 100 ~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~ 175 (765)
+...++.+... .....+.+||+||+|+||+++|+.+++.+ +|....+ ...|..|.. ... +
T Consensus 6 ~~~~w~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~l-----------lC~~~~~~~~~Cg~C~~C~~~~~----~ 69 (325)
T PRK08699 6 HQEQWRQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQAL-----------LCETPAPGHKPCGECMSCHLFGQ----G 69 (325)
T ss_pred cHHHHHHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHH-----------cCCCCCCCCCCCCcCHHHHHHhc----C
Confidence 34455555433 22233459999999999999999999975 3532211 124444433 211 1
Q ss_pred cccccccCCCeEeCCCCCc-cc-----ceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHH
Q 004256 176 NLKTQIARSPFVQIPLGVT-ED-----RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (765)
Q Consensus 176 ~~~~~~~~~~~v~l~~~~~-e~-----~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~ 249 (765)
...-|+.+.+... ++ .-++ +|--+.+.... ...| ..+...|+++|+++.|+...++.|+..|+
T Consensus 70 ------~HpD~~~~~p~~~~~~~g~~~~~I~-id~iR~l~~~~-~~~p---~~~~~kV~iiEp~~~Ld~~a~naLLk~LE 138 (325)
T PRK08699 70 ------SHPDFYEITPLSDEPENGRKLLQIK-IDAVREIIDNV-YLTS---VRGGLRVILIHPAESMNLQAANSLLKVLE 138 (325)
T ss_pred ------CCCCEEEEecccccccccccCCCcC-HHHHHHHHHHH-hhCc---ccCCceEEEEechhhCCHHHHHHHHHHHH
Confidence 1222444332110 00 0011 11001110000 0011 11345699999999999999999999998
Q ss_pred cCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHh
Q 004256 250 EGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFE 302 (765)
Q Consensus 250 ~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e 302 (765)
+.. ....+|.+++ ....+.+.+.+|.-.+ .+. |+..+
T Consensus 139 ep~-------------~~~~~Ilvth-~~~~ll~ti~SRc~~~-~~~-~~~~~ 175 (325)
T PRK08699 139 EPP-------------PQVVFLLVSH-AADKVLPTIKSRCRKM-VLP-APSHE 175 (325)
T ss_pred hCc-------------CCCEEEEEeC-ChHhChHHHHHHhhhh-cCC-CCCHH
Confidence 742 1233444544 3447778889998665 565 33444
No 311
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0021 Score=61.82 Aligned_cols=136 Identities=20% Similarity=0.320 Sum_probs=106.4
Q ss_pred ceEEEEEeCCCCCC-c----hhHHHHHHHHHHHHHhhcC--CCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCC
Q 004256 562 ALVIFVVDASGSMA-L----NRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGG 634 (765)
Q Consensus 562 ~~vv~vvD~SgSM~-~----~rl~~ak~a~~~ll~~~~~--~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~gG 634 (765)
-.+|+|||.|--|. + .|+..-|.++..++...+. +..-+|||...+....++.-+|+.+..++..|..++..|
T Consensus 4 EatvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a~p~vlsT~T~~~gkilt~lhd~~~~g 83 (243)
T COG5148 4 EATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPNVLSTPTKQRGKILTFLHDIRLHG 83 (243)
T ss_pred ceEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecccCCcchhccchhhhhHHHHHhccccccC
Confidence 35789999998774 3 7999999999999875543 457899999988878899999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEE
Q 004256 635 GSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSL 714 (765)
Q Consensus 635 ~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~ 714 (765)
+-.+..+|..|.-.++....++. +..||.+- |.+-. +-.+++...++++++.||.+
T Consensus 84 ~a~~~~~lqiaql~lkhR~nk~q--~qriVaFv-gSpi~---------------------esedeLirlak~lkknnVAi 139 (243)
T COG5148 84 GADIMRCLQIAQLILKHRDNKGQ--RQRIVAFV-GSPIQ---------------------ESEDELIRLAKQLKKNNVAI 139 (243)
T ss_pred cchHHHHHHHHHHHHhcccCCcc--ceEEEEEe-cCccc---------------------ccHHHHHHHHHHHHhcCeeE
Confidence 99999999999888877554443 33333332 33321 11378899999999999988
Q ss_pred EEEeCCC
Q 004256 715 LVIDTEN 721 (765)
Q Consensus 715 ~vig~~~ 721 (765)
-+|-+|.
T Consensus 140 dii~fGE 146 (243)
T COG5148 140 DIIFFGE 146 (243)
T ss_pred EEEehhh
Confidence 8887775
No 312
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=97.68 E-value=0.0007 Score=69.71 Aligned_cols=139 Identities=19% Similarity=0.211 Sum_probs=82.4
Q ss_pred eEEEEEeCCCCCCc------hhHHHHHHHHHHHHHhh--cCCCCeEEEEEeeCCCc------------EEEcCCCc-cHH
Q 004256 563 LVIFVVDASGSMAL------NRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSA------------EVLLPPSR-SIA 621 (765)
Q Consensus 563 ~vv~vvD~SgSM~~------~rl~~ak~a~~~ll~~~--~~~~d~v~lv~F~~~~a------------~~~~p~t~-~~~ 621 (765)
.++||||+|.||.. ..+..|..++..++.+. ..+.|.||||.|+.... .++.++.. +..
T Consensus 1 ~~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~l~~~~~~ 80 (224)
T PF03731_consen 1 ATVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQPLDPPSAE 80 (224)
T ss_dssp EEEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEECC--BHH
T ss_pred CEEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeecCCccCHH
Confidence 37999999999952 35777777777776543 45669999999975522 23444443 555
Q ss_pred HHHHHhhcCCC----------CCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCC
Q 004256 622 MARKRLERLPC----------GGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRP 691 (765)
Q Consensus 622 ~~~~~l~~l~~----------gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~ 691 (765)
.++.....+.. ....++..+|..|..++.............|||+||+..... +
T Consensus 81 ~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~~-~--------------- 144 (224)
T PF03731_consen 81 RLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPHE-D--------------- 144 (224)
T ss_dssp HHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTTT-----------------
T ss_pred HHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCC-C---------------
Confidence 56555544443 345689999999999987532222223456899999985442 1
Q ss_pred CchhHHHHHHHH--HHHHHhCCCEEEEEeC
Q 004256 692 SSQELKDEILEV--AGKIYKAGMSLLVIDT 719 (765)
Q Consensus 692 ~~~~~~~~~~~~--a~~~~~~gi~~~vig~ 719 (765)
.+..+.+..- +.-+...+|.+.++..
T Consensus 145 --~~~~~~~~~~l~~~Dl~~~~i~~~~~~l 172 (224)
T PF03731_consen 145 --DDELERIIQKLKAKDLQDNGIEIELFFL 172 (224)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred --HHHHHHHHHhhccccchhcCcceeEeec
Confidence 1122344444 5668888998877776
No 313
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00034 Score=75.60 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=47.3
Q ss_pred CCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHh
Q 004256 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFE 302 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e 302 (765)
.-|++||+++.|....+|.||..||+- |.+..+|-.++ ....+.+-+.+|.-.+ .+. |+..+
T Consensus 109 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~-~~~~lLpTI~SRCq~~-~~~-~~~~~ 170 (319)
T PRK06090 109 YRLFVIEPADAMNESASNALLKTLEEP-------------APNCLFLLVTH-NQKRLLPTIVSRCQQW-VVT-PPSTA 170 (319)
T ss_pred ceEEEecchhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEEC-ChhhChHHHHhcceeE-eCC-CCCHH
Confidence 359999999999999999999999984 33455666555 5667788999999765 565 34444
No 314
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.0003 Score=76.77 Aligned_cols=154 Identities=15% Similarity=0.143 Sum_probs=84.3
Q ss_pred hHHHHHHHHhhh-cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc---cccccccCc
Q 004256 101 DAIKTALLLGAI-DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE---KAEYDTAGN 176 (765)
Q Consensus 101 ~~~~~aL~l~~~-~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 176 (765)
.+..+.|.-..- ....+.+||.||.|+||+++|+++++.+ .|........|..|.. ... +.
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~L-----------lC~~~~~~~~Cg~C~sC~~~~~----g~ 72 (334)
T PRK07993 8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWL-----------MCQQPQGHKSCGHCRGCQLMQA----GT 72 (334)
T ss_pred hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHH-----------cCCCCCCCCCCCCCHHHHHHHc----CC
Confidence 344555532222 2234558899999999999999999976 4533233334544433 211 10
Q ss_pred ccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEEE
Q 004256 177 LKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVE 256 (765)
Q Consensus 177 ~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~ 256 (765)
-.-|..+.+... ..-++ +|--+.+.. .....| .....-|++||+++.|....+|.||..||+-
T Consensus 73 ------HPD~~~i~p~~~-~~~I~-idqiR~l~~-~~~~~~---~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP----- 135 (334)
T PRK07993 73 ------HPDYYTLTPEKG-KSSLG-VDAVREVTE-KLYEHA---RLGGAKVVWLPDAALLTDAAANALLKTLEEP----- 135 (334)
T ss_pred ------CCCEEEEecccc-cccCC-HHHHHHHHH-HHhhcc---ccCCceEEEEcchHhhCHHHHHHHHHHhcCC-----
Confidence 111222211100 00011 000000000 000111 1223459999999999999999999999984
Q ss_pred eCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeec
Q 004256 257 REGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (765)
Q Consensus 257 r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~ 296 (765)
|.+..+|-.++ ....+.+-+.+|.-.+ .+.
T Consensus 136 --------p~~t~fiL~t~-~~~~lLpTIrSRCq~~-~~~ 165 (334)
T PRK07993 136 --------PENTWFFLACR-EPARLLATLRSRCRLH-YLA 165 (334)
T ss_pred --------CCCeEEEEEEC-ChhhChHHHHhccccc-cCC
Confidence 23445555555 5677888999999764 565
No 315
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=97.62 E-value=0.0028 Score=70.26 Aligned_cols=119 Identities=20% Similarity=0.258 Sum_probs=74.2
Q ss_pred eeEEeccchhhhhhhc----cCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCC-cEEEcCCC
Q 004256 543 KVFVEKTDMRAKRMAR----KAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDS-AEVLLPPS 617 (765)
Q Consensus 543 ~~~i~~~dl~~~~~~~----~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~-a~~~~p~t 617 (765)
.+.|.++|||.+.++. .+...++++.|+||||...+-..||....-+....-..-++|-+|....+. |.-+ .
T Consensus 224 ~ipi~~~DlRyr~~~~~~~p~s~AVv~~lmDvSGSM~~~~K~lak~ff~~l~~fL~~~Y~~Ve~vfI~H~t~A~EV-d-- 300 (421)
T PF04285_consen 224 RIPIDPEDLRYRRWEEVPKPESNAVVFCLMDVSGSMGEFKKDLAKRFFFWLYLFLRRKYENVEIVFIRHHTEAKEV-D-- 300 (421)
T ss_pred ccCCCccccccccCccccCCcCcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCceEEe-c--
Confidence 4669999999976553 344556677899999997655666654433322122233445444433331 3222 1
Q ss_pred ccHHHHHHHhhcCCCCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCC
Q 004256 618 RSIAMARKRLERLPCGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRA 671 (765)
Q Consensus 618 ~~~~~~~~~l~~l~~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~ 671 (765)
....-...-+|||-+++|+..+.+++........ -+..++-+|||..
T Consensus 301 ------Ee~FF~~~esGGT~vSSA~~l~~~ii~erypp~~-wNiY~~~~SDGDN 347 (421)
T PF04285_consen 301 ------EEEFFHSRESGGTRVSSAYELALEIIEERYPPSD-WNIYVFHASDGDN 347 (421)
T ss_pred ------HHHhcccCCCCCeEehHHHHHHHHHHHhhCChhh-ceeeeEEcccCcc
Confidence 1333455678999999999999999986433221 2556788999983
No 316
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.62 E-value=0.00044 Score=71.22 Aligned_cols=216 Identities=16% Similarity=0.164 Sum_probs=116.7
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (765)
+++-.|..++++.+....|.-......-.|+|++||+|+||-|.+-+|-+.+-..++-+ .+
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gvek-------------------lk 67 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEK-------------------LK 67 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchh-------------------ee
Confidence 45556677888888777774333323357899999999999998888877654322100 00
Q ss_pred ccc----cccCc-ccc-cccCCCeEeCCCCCcccceeeecc---cccccccCCCcccCCceeec--cCCeEeccccccCC
Q 004256 169 AEY----DTAGN-LKT-QIARSPFVQIPLGVTEDRLIGSVD---VEESVKTGTTVFQPGLLAEA--HRGVLYIDEINLLD 237 (765)
Q Consensus 169 ~~~----~~~~~-~~~-~~~~~~~v~l~~~~~e~~L~G~~d---~e~~~~~g~~~~~~Gll~~A--~~GiL~lDEi~~L~ 237 (765)
+.. +..+. +.. .....-.+.+.+ ++ .|..| +..-+++=+. .++ +.... .--+++|.|+|.|.
T Consensus 68 i~~~t~~tpS~kklEistvsS~yHlEitP----SD-aG~~DRvViQellKevAQ-t~q-ie~~~qr~fKvvvi~ead~LT 140 (351)
T KOG2035|consen 68 IETRTFTTPSKKKLEISTVSSNYHLEITP----SD-AGNYDRVVIQELLKEVAQ-TQQ-IETQGQRPFKVVVINEADELT 140 (351)
T ss_pred eeeEEEecCCCceEEEEEecccceEEeCh----hh-cCcccHHHHHHHHHHHHh-hcc-hhhccccceEEEEEechHhhh
Confidence 100 00010 000 001111122221 11 12111 0000000000 000 00111 12389999999999
Q ss_pred HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHh
Q 004256 238 EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER 317 (765)
Q Consensus 238 ~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~ 317 (765)
.+.|..|.+-|+.-. .++++|-.+| .-..+-+++.+|.-. +.+..| +.++-..++..+
T Consensus 141 ~dAQ~aLRRTMEkYs-------------~~~RlIl~cn-s~SriIepIrSRCl~-iRvpap-s~eeI~~vl~~v------ 198 (351)
T KOG2035|consen 141 RDAQHALRRTMEKYS-------------SNCRLILVCN-STSRIIEPIRSRCLF-IRVPAP-SDEEITSVLSKV------ 198 (351)
T ss_pred HHHHHHHHHHHHHHh-------------cCceEEEEec-CcccchhHHhhheeE-EeCCCC-CHHHHHHHHHHH------
Confidence 999999999998644 2567778778 556677899999743 356654 333332332211
Q ss_pred hHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Q 004256 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (765)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~ 379 (765)
+.. .+..++.+.+..|++-+ +. +.|..+-++++++
T Consensus 199 -------------------~~k----E~l~lp~~~l~rIa~kS---~~-nLRrAllmlE~~~ 233 (351)
T KOG2035|consen 199 -------------------LKK----EGLQLPKELLKRIAEKS---NR-NLRRALLMLEAVR 233 (351)
T ss_pred -------------------HHH----hcccCcHHHHHHHHHHh---cc-cHHHHHHHHHHHH
Confidence 111 25678888877776543 33 5788887777765
No 317
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00029 Score=80.56 Aligned_cols=201 Identities=16% Similarity=0.186 Sum_probs=107.1
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCe-EeCCCCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPF-VQIPLGV 193 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~l~~~~ 193 (765)
..++|||.|++|+|||.|++++.+.... ...-| ..++|..
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k---------------------------------------~~~~hv~~v~Cs~ 470 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSK---------------------------------------DLIAHVEIVSCST 470 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhcc---------------------------------------ccceEEEEEechh
Confidence 4678999999999999999999987642 01111 2244443
Q ss_pred cccceeeecccccc---cccCCCcccCCceeeccCCeEeccccccCCH---------H-HHHHHHHHHHcCceEEEeCCe
Q 004256 194 TEDRLIGSVDVEES---VKTGTTVFQPGLLAEAHRGVLYIDEINLLDE---------G-ISNLLLNVLTEGVNIVEREGI 260 (765)
Q Consensus 194 ~e~~L~G~~d~e~~---~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~---------~-~q~~Ll~~l~~~~~~v~r~G~ 260 (765)
...+=+..+ .+. .++..... ...|++||+++.|-. . ..+.|..++.+-...+..
T Consensus 471 l~~~~~e~i--Qk~l~~vfse~~~~--------~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~--- 537 (952)
T KOG0735|consen 471 LDGSSLEKI--QKFLNNVFSEALWY--------APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLK--- 537 (952)
T ss_pred ccchhHHHH--HHHHHHHHHHHHhh--------CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHc---
Confidence 221111111 000 11111112 235889999988722 2 223333344221100111
Q ss_pred eEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHH
Q 004256 261 SFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIIL 338 (765)
Q Consensus 261 ~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~ 338 (765)
....+.+||+.+ +-..+.+-|.+ +|..++.+. +|...+|.+|+.....- .
T Consensus 538 ---~~~~ia~Iat~q-e~qtl~~~L~s~~~Fq~~~~L~-ap~~~~R~~IL~~~~s~--~--------------------- 589 (952)
T KOG0735|consen 538 ---RNRKIAVIATGQ-ELQTLNPLLVSPLLFQIVIALP-APAVTRRKEILTTIFSK--N--------------------- 589 (952)
T ss_pred ---cCcEEEEEEech-hhhhcChhhcCccceEEEEecC-CcchhHHHHHHHHHHHh--h---------------------
Confidence 112468899987 43444444433 788877776 56888898887632111 0
Q ss_pred HhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHc----CCCCCCHHHHHHHHHHhcC
Q 004256 339 AREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALE----GREKVNVDDLKKAVELVIL 404 (765)
Q Consensus 339 a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~----gr~~Vt~edv~~A~~lvl~ 404 (765)
+..+....++.+ +...++-..+-+..++..|--.|.++ +..-+|.+++.++++--.+
T Consensus 590 ------~~~~~~~dLd~l---s~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P 650 (952)
T KOG0735|consen 590 ------LSDITMDDLDFL---SVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVP 650 (952)
T ss_pred ------hhhhhhHHHHHH---HHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcCh
Confidence 011222334443 33333335666777777766666633 2236789999999875433
No 318
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=97.59 E-value=0.0009 Score=77.22 Aligned_cols=213 Identities=15% Similarity=0.146 Sum_probs=125.7
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCc
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~ 194 (765)
.+-+++=.||+|||||.+=+- .+|. .-++ ---..|
T Consensus 215 ~N~Nl~ELgPrgTGKS~~y~e---iSp~-----------------------------------------~~li-SGG~~T 249 (675)
T TIGR02653 215 NNYNLCELGPRGTGKSHVYKE---CSPN-----------------------------------------SILM-SGGQTT 249 (675)
T ss_pred cccceEEECCCCCCcceeeec---cCCc-----------------------------------------eEEE-ECCccc
Confidence 467799999999999987653 3331 1111 112255
Q ss_pred ccceeeecccccccccCCCcccCCceeeccCCeEeccccccC---CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEE
Q 004256 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL---DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLI 271 (765)
Q Consensus 195 e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L---~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lI 271 (765)
...||.. ....++|++..-+ ++.+|||..+ +++.++.|-++|++|. +.|.+.+..-.+.++++
T Consensus 250 ~A~LFyn----------~~~~~~GlVg~~D--~VaFDEva~i~f~d~d~v~imK~YM~sG~--FsRG~~~~~a~as~vfv 315 (675)
T TIGR02653 250 VANLFYN----------MSTRQIGLVGMWD--VVAFDEVAGIEFKDKDGVQIMKDYMASGS--FARGKESIEGKASIVFV 315 (675)
T ss_pred hhHeeEE----------cCCCceeEEeecc--EEEEeeccccccCCHHHHHHHHHHhhcCc--ccccccccccceeEEEE
Confidence 5667764 2334678876554 8999999875 4677889999999999 88887766666777777
Q ss_pred EeecCC--------------CCCc--chHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHH
Q 004256 272 ATYNPE--------------EGVV--REHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQ 335 (765)
Q Consensus 272 at~N~~--------------eg~l--~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (765)
+-.|.. +..+ +.+|+|||...+ . -.+ |+.....+. ...+-...+-+++.
T Consensus 316 GNi~~~v~~~~k~~~lf~~lP~~~~~DsAflDRiH~yi--P---GWe----iPk~~~e~~------t~~yGl~~DylsE~ 380 (675)
T TIGR02653 316 GNINQSVETLVKTSHLFAPFPEAMRIDTAFFDRFHYYI--P---GWE----IPKMRPEYF------TNRYGFIVDYLAEY 380 (675)
T ss_pred cccCCchHHHhhcccccccCChhhcccchHHHHhhccC--c---CCc----CccCCHHHc------ccCCcchHHHHHHH
Confidence 776631 1223 347889987653 1 111 111111110 00110000001111
Q ss_pred HHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCcCC
Q 004256 336 IILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL-EGREKVNVDDLKKAVELVILPRSII 409 (765)
Q Consensus 336 il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l-~gr~~Vt~edv~~A~~lvl~hR~~~ 409 (765)
+..-| ....+ ..+-++..-.+..+.|-.+.+.++...+-.| .=...++.+|+++.+++++--|++.
T Consensus 381 l~~lR----~~~~~----~~~~~~~~l~~~~~~RD~~aV~kt~SgllKLl~P~~~~~~ee~e~~l~~Ale~RrrV 447 (675)
T TIGR02653 381 MREMR----KRSFA----DAIDRFFKLGNNLNQRDVIAVRKTVSGLLKLLYPDGEYTKDDVRECLTYAMEGRRRV 447 (675)
T ss_pred HHHHH----hhhHH----HHHHhhEecCCCCchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 11111 11111 1111111112344789999999999988887 5556899999999999999887663
No 319
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.56 E-value=0.00036 Score=80.26 Aligned_cols=118 Identities=13% Similarity=0.067 Sum_probs=66.5
Q ss_pred CCeEeccccccCCHHHHHHHHHHHHcCc-eEEEeCC-ee------EEeeCceEEEEeecCCCCCcchHHHh--hhhccee
Q 004256 225 RGVLYIDEINLLDEGISNLLLNVLTEGV-NIVEREG-IS------FKHPCKPLLIATYNPEEGVVREHLLD--RIAINLS 294 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~~q~~Ll~~l~~~~-~~v~r~G-~~------~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~ 294 (765)
.-.|+||||+-.+...++.|+..+.... -.....+ .. ...+..==||+.+| ..+-|+|.. -|..++.
T Consensus 388 P~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICN---dLYaPaLR~Lr~~A~ii~ 464 (877)
T KOG1969|consen 388 PVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICN---DLYAPALRPLRPFAEIIA 464 (877)
T ss_pred cceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEec---CccchhhhhcccceEEEE
Confidence 3589999999999999999999887321 0011111 10 00001112577777 334455543 3555554
Q ss_pred ecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHH
Q 004256 295 ADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYA 374 (765)
Q Consensus 295 i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~l 374 (765)
+. |+...+..+=++. . ..-.|.+++..++..||++|.. ..|..|+.
T Consensus 465 f~-~p~~s~Lv~RL~~-------I----------------------C~rE~mr~d~~aL~~L~el~~~----DIRsCINt 510 (877)
T KOG1969|consen 465 FV-PPSQSRLVERLNE-------I----------------------CHRENMRADSKALNALCELTQN----DIRSCINT 510 (877)
T ss_pred ec-CCChhHHHHHHHH-------H----------------------HhhhcCCCCHHHHHHHHHHhcc----hHHHHHHH
Confidence 43 5555543311110 0 1113678888888888888754 36888887
Q ss_pred HHHHH
Q 004256 375 ARVAK 379 (765)
Q Consensus 375 lr~A~ 379 (765)
++.-.
T Consensus 511 LQfLa 515 (877)
T KOG1969|consen 511 LQFLA 515 (877)
T ss_pred HHHHH
Confidence 76643
No 320
>PRK09183 transposase/IS protein; Provisional
Probab=97.54 E-value=0.00015 Score=76.36 Aligned_cols=50 Identities=18% Similarity=0.106 Sum_probs=33.9
Q ss_pred CCCCCceeechH-HHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 91 FFPLAAVVGQDA-IKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 91 ~~~f~~ivG~~~-~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
.|+|+...+.+. ....|.-...-....+|+|+||+|||||+||.+|....
T Consensus 76 ~fd~~~~~~~~~~~i~~L~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 76 EYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred hcccccCCCCCHHHHHHHhcCCchhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 356666666544 44455222223345789999999999999999997653
No 321
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.52 E-value=2.8e-05 Score=77.12 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=22.4
Q ss_pred cCCCCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 113 DREIGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 113 ~~~~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
.....+++|+|++|||||.||-+|+..+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~ 71 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEA 71 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHh
Confidence 3456789999999999999999998754
No 322
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=97.49 E-value=0.00023 Score=62.96 Aligned_cols=55 Identities=25% Similarity=0.321 Sum_probs=48.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 004256 346 VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (765)
Q Consensus 346 v~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~l 401 (765)
+.++++....+-..+...++ |.|+...++++|+++|+|+|.+.|+.+||.+|+.|
T Consensus 41 ~~l~~~~~~~l~~~~~~~~l-S~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~y 95 (96)
T PF13335_consen 41 CPLSSEAKKLLEQAAEKLNL-SARGYHRILRVARTIADLEGSERITREHIAEALSY 95 (96)
T ss_pred cCCCHHHHHHHHHHHHHcCc-CHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHhC
Confidence 56777777777777777776 89999999999999999999999999999999976
No 323
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.41 E-value=8.7e-05 Score=93.80 Aligned_cols=133 Identities=21% Similarity=0.236 Sum_probs=95.6
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEe--CCCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQ--IPLG 192 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--l~~~ 192 (765)
..-++||.||+|+|||.++..++..... .++. .+..
T Consensus 439 ~~~pillqG~tssGKtsii~~la~~~g~------------------------------------------~~vrinnheh 476 (1856)
T KOG1808|consen 439 GKFPILLQGPTSSGKTSIIKELARATGK------------------------------------------NIVRINNHEH 476 (1856)
T ss_pred CCCCeEEecCcCcCchhHHHHHHHHhcc------------------------------------------Cceehhcccc
Confidence 3459999999999999999999998652 2222 2333
Q ss_pred CcccceeeecccccccccCCCcccCCceeec--cCCeEeccccccCCHHHHHHHHHHHHc-CceEEEeCCeeEEeeCceE
Q 004256 193 VTEDRLIGSVDVEESVKTGTTVFQPGLLAEA--HRGVLYIDEINLLDEGISNLLLNVLTE-GVNIVEREGISFKHPCKPL 269 (765)
Q Consensus 193 ~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A--~~GiL~lDEi~~L~~~~q~~Ll~~l~~-~~~~v~r~G~~~~~p~~~~ 269 (765)
..-.+++|+. .+..+|...++-|.+..| +|-.+|+||+|+.+.++...|.+++++ +.+.+.+...-.....+|+
T Consensus 477 td~qeyig~y---~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~ 553 (1856)
T KOG1808|consen 477 TDLQEYIGTY---VADDNGDLVFREGVLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFM 553 (1856)
T ss_pred chHHHHHHhh---hcCCCCCeeeehhHHHHHHHhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchh
Confidence 4445677731 234457778888888777 677999999999999999999999988 5544433222233334799
Q ss_pred EEEeecCCC-----CCcchHHHhhhhcc
Q 004256 270 LIATYNPEE-----GVVREHLLDRIAIN 292 (765)
Q Consensus 270 lIat~N~~e-----g~l~~~L~dRf~~~ 292 (765)
+.+|-|+.. ..+..+|+.||...
T Consensus 554 lfatqn~~~~y~grk~lsRa~~~rf~e~ 581 (1856)
T KOG1808|consen 554 LFATQNPPGTYGGRKILSRALRNRFIEL 581 (1856)
T ss_pred hhhhccCccccchhhhhhhcccccchhh
Confidence 999999742 34677888888665
No 324
>PRK10536 hypothetical protein; Provisional
Probab=97.41 E-value=0.00051 Score=71.29 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=35.1
Q ss_pred CCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhh
Q 004256 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
.+++..|.+.+.....++.+.. ...-|++.||+|||||+||.+++..
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~al~--~~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLKAIE--SKQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred hcCCccccCCCHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3566778887776666543333 2357999999999999999998873
No 325
>PF13173 AAA_14: AAA domain
Probab=97.36 E-value=0.00024 Score=66.45 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
.-++|+|++|+||||+++.+.+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999988754
No 326
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=97.32 E-value=0.0031 Score=71.94 Aligned_cols=137 Identities=16% Similarity=0.136 Sum_probs=90.4
Q ss_pred CceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCChhHH
Q 004256 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAH 640 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~gG~T~l~~ 640 (765)
-.+.+.|.|+||||.+..|..+-. +.-++.+.-.+-=+=.+|+|+.+ .+.+.-...+..+-.+.+..++-|+.|++..
T Consensus 340 l~n~iav~DvSGSM~~~pm~vaia-Lgll~ae~~~~pf~~~~ITFs~~-P~~~~i~g~~l~ekv~~~~~~~wg~nTn~~a 417 (534)
T PF11443_consen 340 LENCIAVCDVSGSMSGPPMDVAIA-LGLLIAELNKGPFKGRFITFSEN-PQLHKIKGDTLREKVRFIRRMDWGMNTNFQA 417 (534)
T ss_pred ccceEEEEecCCccCccHHHHHHH-HHHHHHHhcccccCCeEEeecCC-ceEEEecCCCHHHHHHHHHhCCcccCCcHHH
Confidence 478899999999999888887763 32333323233334578999999 5554333347777777888999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCE
Q 004256 641 GLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMS 713 (765)
Q Consensus 641 aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~ 713 (765)
.+..-+.......-+...-...|+++||-+-+........+ -......+.+++++.|..
T Consensus 418 VFdlIL~~Av~~~l~~e~M~k~lfV~SDMeFD~a~~~~~~~--------------w~T~~e~i~~~f~~aGY~ 476 (534)
T PF11443_consen 418 VFDLILETAVKNKLKQEDMPKRLFVFSDMEFDQASNSSDRP--------------WETNFEAIKRKFEEAGYE 476 (534)
T ss_pred HHHHHHHHHHHcCCChHHCCceEEEEeccccccccccccCc--------------cccHHHHHHHHHHHhCCC
Confidence 99887777655433222223368999998766543321100 013456677788888854
No 327
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.31 E-value=0.00053 Score=67.33 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=32.8
Q ss_pred cCCeEeccccccC---CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCC-CCCcchHHHhhhhcc
Q 004256 224 HRGVLYIDEINLL---DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-EGVVREHLLDRIAIN 292 (765)
Q Consensus 224 ~~GiL~lDEi~~L---~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~-eg~l~~~L~dRf~~~ 292 (765)
+..+++||||..| .+..+..+..+|+... .+|++-... ...|-+.+..|=++.
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~----------------~vi~vv~~~~~~~~l~~i~~~~~~~ 151 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLDSNK----------------PVIGVVHKRSDNPFLEEIKRRPDVK 151 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHCTTS----------------EEEEE--SS--SCCHHHHHTTTTSE
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHcCCC----------------cEEEEEecCCCcHHHHHHHhCCCcE
Confidence 4569999999876 5688999999998654 467776655 455666777764443
No 328
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00023 Score=78.90 Aligned_cols=135 Identities=20% Similarity=0.265 Sum_probs=75.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCccc
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTED 196 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~ 196 (765)
..|||.||+|+|||+||--++.-+ .-|||.+ .+.+
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S------------------------------------------~FPFvKi---iSpe 573 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSS------------------------------------------DFPFVKI---ISPE 573 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhc------------------------------------------CCCeEEE---eChH
Confidence 459999999999999999988753 5688875 3445
Q ss_pred ceeeecccccccccCCCcccCCceeec---cCCeEeccccccCC------H----HHHHHHHHHHHcCceEEEeCCeeEE
Q 004256 197 RLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINLLD------E----GISNLLLNVLTEGVNIVEREGISFK 263 (765)
Q Consensus 197 ~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~~L~------~----~~q~~Ll~~l~~~~~~v~r~G~~~~ 263 (765)
+++|.-.-++. ..-.+.+..| .-.+++||+|++|= | -+...|+-++...- +.|
T Consensus 574 ~miG~sEsaKc------~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~p----pkg---- 639 (744)
T KOG0741|consen 574 DMIGLSESAKC------AHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQP----PKG---- 639 (744)
T ss_pred HccCccHHHHH------HHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCC----CCC----
Confidence 56663211111 0111222222 22589999999872 2 34444444443321 111
Q ss_pred eeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHH
Q 004256 264 HPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIAT 312 (765)
Q Consensus 264 ~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~ 312 (765)
-+..+++||...+-.-.-.+++.|+..+.++--...+...+++....
T Consensus 640 --~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n 686 (744)
T KOG0741|consen 640 --RKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELN 686 (744)
T ss_pred --ceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHcc
Confidence 15667777763221112367888988755532223345555555433
No 329
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.27 E-value=0.017 Score=61.09 Aligned_cols=172 Identities=15% Similarity=0.223 Sum_probs=106.8
Q ss_pred CceEEEEEeCCCCCCc--------hhHHHHHHHHHHHHH--hhcCCCCeEEEEEeeCCCcEEEcCCCc------c-----
Q 004256 561 GALVIFVVDASGSMAL--------NRMQNAKGAALKLLA--ESYTCRDQVSIIPFRGDSAEVLLPPSR------S----- 619 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~--------~rl~~ak~a~~~ll~--~~~~~~d~v~lv~F~~~~a~~~~p~t~------~----- 619 (765)
+..+++|||++.--++ ..+..+-..+..|+. -++....+|+||+....+..++.|.+. +
T Consensus 2 ~slL~vvlD~np~~W~~~~~~~~~~~l~~~l~sllvF~NahL~l~~~N~vaVIAs~~~~~~~LYps~~~~~~~~~~~~~~ 81 (279)
T TIGR00627 2 PSLLVVIIEANPCSWGMLALAHGKRTISKVLRAIVVFLNAHLAFNANNKLAVIASHSQDNKYLYPSTRCEDRNASELDPK 81 (279)
T ss_pred CcEEEEEEeCCHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCccCCEEEEEecCCcceEEecCCccccccccccccc
Confidence 3567899999876532 123333334444433 246788999999998887888888641 0
Q ss_pred -----------------HHHHHHHhhcCC----CCCCChhHHHHHHHHHHHHhhhccC---CCCceEEEEEeCCCCCCCC
Q 004256 620 -----------------IAMARKRLERLP----CGGGSPLAHGLSMAVRVGLNAEKSG---DVGRIMIVAITDGRANISL 675 (765)
Q Consensus 620 -----------------~~~~~~~l~~l~----~gG~T~l~~aL~~A~~~l~~~~~~~---~~~~~~vvliTDG~~n~~~ 675 (765)
...+.+.+.... ..+.|.|+.||..|+-.+.+..+.. ...++.|+++|-+. +.+
T Consensus 82 ~~~~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~-~~~- 159 (279)
T TIGR00627 82 RLRELLYRDFRTVDETIVEEIKPLMAHADKHMKKDSRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITP-DMA- 159 (279)
T ss_pred cccchhccchhHHHHHHHHHHHHHHhhchhcccccccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCC-Cch-
Confidence 112222332222 1257789999999998887653221 12245566665432 111
Q ss_pred CCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHH
Q 004256 676 KRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATT 755 (765)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~ 755 (765)
.+. --+......+++.+|++-+++.+... +..+++++++.|||.|..+.+ .+.+.+.+
T Consensus 160 ------------------~qY-i~~mn~Ifaaqk~~I~Idv~~L~~e~-~~~~lqQa~~~TgG~Y~~~~~--~~~L~q~L 217 (279)
T TIGR00627 160 ------------------LQY-IPLMNCIFSAQKQNIPIDVVSIGGDF-TSGFLQQAADITGGSYLHVKK--PQGLLQYL 217 (279)
T ss_pred ------------------HHH-HHHHHHHHHHHHcCceEEEEEeCCcc-ccHHHHHHHHHhCCEEeccCC--HhHHHHHH
Confidence 011 22356677788899999999886521 468999999999999998864 44455554
Q ss_pred H
Q 004256 756 K 756 (765)
Q Consensus 756 ~ 756 (765)
-
T Consensus 218 ~ 218 (279)
T TIGR00627 218 M 218 (279)
T ss_pred H
Confidence 3
No 330
>PTZ00395 Sec24-related protein; Provisional
Probab=97.24 E-value=0.0069 Score=74.09 Aligned_cols=183 Identities=14% Similarity=0.089 Sum_probs=113.4
Q ss_pred cCCceEEEEEeCCCCCCc-hhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCC------------------------c---
Q 004256 559 KAGALVIFVVDASGSMAL-NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDS------------------------A--- 610 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~-~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~------------------------a--- 610 (765)
-.+..++||||+|-+--. .=+..+-.+++..|.....++.+||+|+|+..- .
T Consensus 950 p~PP~YvFLIDVS~~AVkSGLl~tacesIK~sLDsL~dpRTRVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qPQML 1029 (1560)
T PTZ00395 950 MLPPYFVFVVECSYNAIYNNITYTILEGIRYAVQNVKCPQTKIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNHQVI 1029 (1560)
T ss_pred CCCCEEEEEEECCHHHHhhChHHHHHHHHHHHHhcCCCCCcEEEEEEecCcEEEEecCcccccccccccccccCCCceEE
Confidence 346789999999976532 233455556777776555678899999996541 0
Q ss_pred ------EEEcCC---------CccHHHHHHHhhcCC------CCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCC
Q 004256 611 ------EVLLPP---------SRSIAMARKRLERLP------CGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDG 669 (765)
Q Consensus 611 ------~~~~p~---------t~~~~~~~~~l~~l~------~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG 669 (765)
+..+|+ ..+++.+...|+.|+ ...+.-++.||+.|..+|......+ .|+++.-.
T Consensus 1030 VVSDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~GGGG-----KIiVF~SS 1104 (1560)
T PTZ00395 1030 VMSDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERNGLG-----SICMFYTT 1104 (1560)
T ss_pred eecCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcCCCc-----eEEEEEcC
Confidence 122333 235566777777664 2346779999999999987643322 25556669
Q ss_pred CCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCC--HHHHHHHHHHcCCeEEEcCCCC
Q 004256 670 RANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLVIDTENKFVS--TGFAKEIARVAQGKYYYLPNAS 747 (765)
Q Consensus 670 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~--~~~l~~LA~~~gG~y~~~~~~~ 747 (765)
.||.|.+.-.-.. .... ...-......-...++..+.+.+|.|-++-+...+++ ..-+..|++.|||..|+.+...
T Consensus 1105 LPniGpGaLK~Re-~~~K-Ek~Ll~pqd~FYK~LA~ECsk~qISVDLFLfSsqYvDVDVATLg~Lsr~TGGqlyyYPnFn 1182 (1560)
T PTZ00395 1105 TPNCGIGAIKELK-KDLQ-ENFLEVKQKIFYDSLLLDLYAFNISVDIFIISSNNVRVCVPSLQYVAQNTGGKILFVENFL 1182 (1560)
T ss_pred CCCCCCCcccccc-cccc-cccccccchHHHHHHHHHHHhcCCceEEEEccCcccccccccccchhcccceeEEEeCCCc
Confidence 9998865421000 0000 0000000113346688888888987766666654443 4678999999999988877654
Q ss_pred h
Q 004256 748 D 748 (765)
Q Consensus 748 ~ 748 (765)
.
T Consensus 1183 a 1183 (1560)
T PTZ00395 1183 W 1183 (1560)
T ss_pred c
Confidence 3
No 331
>PHA01747 putative ATP-dependent protease
Probab=97.21 E-value=0.0013 Score=70.70 Aligned_cols=88 Identities=22% Similarity=0.097 Sum_probs=64.5
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCc
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~ 194 (765)
..-|++=.||+|||||++-+-+..++|. ..-....|
T Consensus 189 ~NyNliELgPRGTGKS~~f~eis~fsp~--------------------------------------------~iSGG~~T 224 (425)
T PHA01747 189 RPVHIIELSNRGTGKTTTFVILQELFNF--------------------------------------------RYYTEPPT 224 (425)
T ss_pred CCeeEEEecCCCCChhhHHHHhhhcCCc--------------------------------------------eeeCCCCc
Confidence 4456888899999999999998876663 11111245
Q ss_pred ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCC----HHHHHHHHHHHHcCceEEEeCCe
Q 004256 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD----EGISNLLLNVLTEGVNIVEREGI 260 (765)
Q Consensus 195 e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~----~~~q~~Ll~~l~~~~~~v~r~G~ 260 (765)
...||.. ....+.|++...+ ++++|||.... .++...|.+.|+.|. +.|.+.
T Consensus 225 vA~LFyN----------~~t~~~GLVg~~D--~VaFDEVa~i~f~~~kdiv~IMKdYMesG~--FsRG~~ 280 (425)
T PHA01747 225 YANLVYD----------AKTNALGLVFLSN--GLIFDEIQTWKDSNMRAINSTLSTGMENCV--WTRGAG 280 (425)
T ss_pred hHHheEe----------cCCCceeEEeecc--EEEEEccccccCCCHHHHHHHHHHHhhcce--eecCCC
Confidence 5567763 2334678887655 89999999864 578999999999998 778765
No 332
>PRK06921 hypothetical protein; Provisional
Probab=97.17 E-value=0.00013 Score=77.11 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.8
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
...+++|+|++|||||.|+.+|+..+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 356799999999999999999998764
No 333
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.14 E-value=0.00023 Score=77.33 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.0
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
...+++|+|++|||||.||.+|+..+-
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~ 208 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELL 208 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 458899999999999999999998753
No 334
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.14 E-value=0.0017 Score=61.99 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=23.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
.-.|+|+|+||+||||++.-|+..+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 356999999999999999999988764
No 335
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.13 E-value=0.00044 Score=71.98 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.+++|+|++|||||+|+.+|+..+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998764
No 336
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.0064 Score=70.74 Aligned_cols=188 Identities=18% Similarity=0.236 Sum_probs=120.8
Q ss_pred EeccchhhhhhhccCCceEEEEEeCCCCCCc-hhHHHHHHHHHHHHHhhcC--CCCeEEEEEeeCCCcE-----------
Q 004256 546 VEKTDMRAKRMARKAGALVIFVVDASGSMAL-NRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAE----------- 611 (765)
Q Consensus 546 i~~~dl~~~~~~~~~~~~vv~vvD~SgSM~~-~rl~~ak~a~~~ll~~~~~--~~d~v~lv~F~~~~a~----------- 611 (765)
+-+.+..++ .-.+..++||+|+|-|-.. .-++.++++++.-|. .+. +|.+||+|+|++. ..
T Consensus 282 iAP~eYmlR---~P~Pavy~FliDVS~~a~ksG~L~~~~~slL~~LD-~lpgd~Rt~igfi~fDs~-ihfy~~~~~~~qp 356 (887)
T KOG1985|consen 282 IAPSEYMLR---PPQPAVYVFLIDVSISAIKSGYLETVARSLLENLD-ALPGDPRTRIGFITFDST-IHFYSVQGDLNQP 356 (887)
T ss_pred ecCcccccC---CCCCceEEEEEEeehHhhhhhHHHHHHHHHHHhhh-cCCCCCcceEEEEEeece-eeEEecCCCcCCC
Confidence 334444443 3457889999999987654 356677777777665 555 7889999999765 11
Q ss_pred ------------------EEcCCCccHHHHHHHhhcCC------CCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEe
Q 004256 612 ------------------VLLPPSRSIAMARKRLERLP------CGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAIT 667 (765)
Q Consensus 612 ------------------~~~p~t~~~~~~~~~l~~l~------~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliT 667 (765)
.++|+...++.++..|+.|+ ..-+..++.||+.|..++..... .|+++.
T Consensus 357 ~mm~vsdl~d~flp~pd~lLv~L~~ck~~i~~lL~~lp~~F~~~~~t~~alGpALkaaf~li~~~GG-------ri~vf~ 429 (887)
T KOG1985|consen 357 QMMIVSDLDDPFLPMPDSLLVPLKECKDLIETLLKTLPEMFQDTRSTGSALGPALKAAFNLIGSTGG-------RISVFQ 429 (887)
T ss_pred ceeeeccccccccCCchhheeeHHHHHHHHHHHHHHHHHHHhhccCcccccCHHHHHHHHHHhhcCC-------eEEEEe
Confidence 12222223444666666664 23467899999999999875421 356677
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCCchhHH-------HHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeE
Q 004256 668 DGRANISLKRSTDPEATASDAPRPSSQELK-------DEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKY 740 (765)
Q Consensus 668 DG~~n~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y 740 (765)
-+-+|.|.+.-.-. .++..-+.++.. .-..+++-.+.+.+|.|-.+-+...+.+..-|..|++.+||..
T Consensus 430 s~lPnlG~G~L~~r----Edp~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI~VDlFl~s~qY~DlAsLs~LskySgG~~ 505 (887)
T KOG1985|consen 430 STLPNLGAGKLKPR----EDPNVRSSDEDSQLLSPATDFYKDLALECSKSQICVDLFLFSEQYTDLASLSCLSKYSGGQV 505 (887)
T ss_pred ccCCCCCccccccc----cccccccchhhhhccCCCchHHHHHHHHhccCceEEEEEeecccccchhhhhccccccCcee
Confidence 79999987643111 111100000000 1124556667778888888888877888899999999999997
Q ss_pred EEcCCCChH
Q 004256 741 YYLPNASDA 749 (765)
Q Consensus 741 ~~~~~~~~~ 749 (765)
|+-+..+..
T Consensus 506 y~YP~f~~s 514 (887)
T KOG1985|consen 506 YYYPSFDGS 514 (887)
T ss_pred EEccCCCCC
Confidence 777666554
No 337
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.09 E-value=0.00096 Score=73.46 Aligned_cols=219 Identities=18% Similarity=0.138 Sum_probs=113.9
Q ss_pred CCCceeechHHHHHH----HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcc-hhcccccCCCCCCCCcccccccc
Q 004256 93 PLAAVVGQDAIKTAL----LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIE-VVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 93 ~f~~ivG~~~~~~aL----~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
+-..++|.+.-+..+ ....-....+.+.+.|-||||||.+...+...+..-. ....|++||..-...
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~-------- 219 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEA-------- 219 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccch--------
Confidence 345688988876666 2223344568899999999999999887766554211 122355666321000
Q ss_pred cccccccCcccccccCCCeEeCCCCCcccceeeec-ccccccccC---CCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSV-DVEESVKTG---TTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~-d~e~~~~~g---~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
. .....+++.+ ....+-.+| ...+..-.-....-=++++||+|.|...-|..
T Consensus 220 ---------------~---------aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~v 275 (529)
T KOG2227|consen 220 ---------------S---------AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTV 275 (529)
T ss_pred ---------------H---------HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccce
Confidence 0 0000111111 000000001 00000000000112378999999997665665
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhh----hc-------ceeecCCCCHhhHHHHHHHHH
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRI----AI-------NLSADLPMTFEDRVAAVGIAT 312 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf----~~-------~v~i~~p~~~e~r~dI~~l~~ 312 (765)
|+.+.+=-. ....++++|+-.|. =+|-||| .. .+.+ -|++.++..+|+.-..
T Consensus 276 Ly~lFewp~----------lp~sr~iLiGiANs------lDlTdR~LprL~~~~~~~P~~l~F-~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 276 LYTLFEWPK----------LPNSRIILIGIANS------LDLTDRFLPRLNLDLTIKPKLLVF-PPYTKDQIVEILQQRL 338 (529)
T ss_pred eeeehhccc----------CCcceeeeeeehhh------hhHHHHHhhhhhhccCCCCceeee-cCCCHHHHHHHHHHHH
Confidence 555433111 11236888998883 2333333 22 2222 3778877766654221
Q ss_pred HHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCC
Q 004256 313 QFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREK 389 (765)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~ 389 (765)
.- ...+.+-..+++.++.-+....+ ..|.++.++|-|-.+|..+++..
T Consensus 339 ~~----------------------------~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv~R~aiEI~E~e~r~~ 386 (529)
T KOG2227|consen 339 SE----------------------------ESTSIFLNAAIELCARKVAAPSG-DLRKALDVCRRAIEIAEIEKRKI 386 (529)
T ss_pred hc----------------------------ccccccchHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHHhhc
Confidence 10 01123333566666655555444 57999999999999998887643
No 338
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.0017 Score=61.00 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
..+|||+|-|||||||++..|+..+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 4679999999999999999999765
No 339
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=97.05 E-value=0.0073 Score=65.73 Aligned_cols=145 Identities=23% Similarity=0.287 Sum_probs=78.8
Q ss_pred CceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhc-CCCCeEEEEEeeCCCcE-------EE----cCCCc-cHHHHHHHh
Q 004256 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESY-TCRDQVSIIPFRGDSAE-------VL----LPPSR-SIAMARKRL 627 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~-~~~d~v~lv~F~~~~a~-------~~----~p~t~-~~~~~~~~l 627 (765)
...|.+|||.||||.|.++..|.. ...+|...+ +-+-++-|..|... +. .. .|... ....+...+
T Consensus 413 dtvVtlviDnSGSMrGRpItvAat-cAdilArtLeRcgVk~eIlGFTT~-awkGg~sre~wlk~Gkp~~pgrlndlrhii 490 (620)
T COG4547 413 DTVVTLVIDNSGSMRGRPITVAAT-CADILARTLERCGVKVEILGFTTK-AWKGGQSRETWLKRGKPAFPGRLNDLRHII 490 (620)
T ss_pred hhhheeeeccCCCcCCcceehhHH-HHHHHHHHHHHcCCceEEeeeeec-cccCCccHHHHHhcCCCCCchhhhhHHHHH
Confidence 466779999999999998887764 444444343 34566777777553 11 00 01110 111111111
Q ss_pred hc------------C----CCCC-CChh-HHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCC
Q 004256 628 ER------------L----PCGG-GSPL-AHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAP 689 (765)
Q Consensus 628 ~~------------l----~~gG-~T~l-~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~ 689 (765)
.. | ..|- .-|+ +.+|..|...+..... .+.++++||||-|-..-+-+..
T Consensus 491 yksAdaPwrRARrnlGlmmreglLkeNiDGEal~wah~rl~gRpE----qrkIlmmiSDGAPvddstlsvn--------- 557 (620)
T COG4547 491 YKSADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIGRPE----QRKILMMISDGAPVDDSTLSVN--------- 557 (620)
T ss_pred HhccCCHHHHHHhhcchhhhcchhhccCChHHHHHHHHHHhcChh----hceEEEEecCCCcccccccccC---------
Confidence 11 1 0010 1111 4566666665543322 2458899999987432111100
Q ss_pred CCCchhHHHHHHHHHHHHH-hCCCEEEEEeCCCC
Q 004256 690 RPSSQELKDEILEVAGKIY-KAGMSLLVIDTENK 722 (765)
Q Consensus 690 ~~~~~~~~~~~~~~a~~~~-~~gi~~~vig~~~~ 722 (765)
| -......+....+.+. .+.|.++.||++..
T Consensus 558 -p-GnylerHLRaVieeIEtrSpveLlAIGighD 589 (620)
T COG4547 558 -P-GNYLERHLRAVIEEIETRSPVELLAIGIGHD 589 (620)
T ss_pred -C-chHHHHHHHHHHHHHhcCCchhheeeecccc
Confidence 1 1345666777777775 56799999999974
No 340
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.05 E-value=0.00094 Score=70.14 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=24.5
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
...+++|+|++|||||.||-+|+..+-
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 678899999999999999999998763
No 341
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.0044 Score=66.07 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=44.1
Q ss_pred cCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceee
Q 004256 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSA 295 (765)
Q Consensus 224 ~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i 295 (765)
..-|++||++++|....+|.||..|++- |.+.++|-+++ ....+.+-+.+|.-.+ .+
T Consensus 104 ~~kV~II~~ad~m~~~AaNaLLKtLEEP-------------p~~t~~iL~t~-~~~~lLpTI~SRcq~i-~f 160 (290)
T PRK07276 104 KQQVFIIKDADKMHVNAANSLLKVIEEP-------------QSEIYIFLLTN-DENKVLPTIKSRTQIF-HF 160 (290)
T ss_pred CcEEEEeehhhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEEC-ChhhCchHHHHcceee-eC
Confidence 4459999999999999999999999973 23455555555 4667788999998654 45
No 342
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.98 E-value=0.0033 Score=72.39 Aligned_cols=139 Identities=17% Similarity=0.185 Sum_probs=93.5
Q ss_pred CCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCC---CCCcchHHHhhhhcceeecCCCCH
Q 004256 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE---EGVVREHLLDRIAINLSADLPMTF 301 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~---eg~l~~~L~dRf~~~v~i~~p~~~ 301 (765)
--||+|||++.|=..-|+.|..+.+--. . -.+.++||+-.|.- +..|....-.|+++.--...|++.
T Consensus 509 ~~VvLiDElD~Lvtr~QdVlYn~fdWpt--~--------~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth 578 (767)
T KOG1514|consen 509 TTVVLIDELDILVTRSQDVLYNIFDWPT--L--------KNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTH 578 (767)
T ss_pred CEEEEeccHHHHhcccHHHHHHHhcCCc--C--------CCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCH
Confidence 3488999999998888888888776322 1 12356777766642 233334455688886323358898
Q ss_pred hhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Q 004256 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (765)
Q Consensus 302 e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~ 381 (765)
++..+|+...+.-. -.+...+++.++.....-.+ +.|..+.+++.|..+
T Consensus 579 ~qLq~Ii~~RL~~~------------------------------~~f~~~aielvarkVAavSG-DaRraldic~RA~Ei 627 (767)
T KOG1514|consen 579 EQLQEIISARLKGL------------------------------DAFENKAIELVARKVAAVSG-DARRALDICRRAAEI 627 (767)
T ss_pred HHHHHHHHHhhcch------------------------------hhcchhHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 88888876433211 12355666666654444434 679999999999998
Q ss_pred HHHcCC-------CCCCHHHHHHHHHHhcC
Q 004256 382 AALEGR-------EKVNVDDLKKAVELVIL 404 (765)
Q Consensus 382 A~l~gr-------~~Vt~edv~~A~~lvl~ 404 (765)
|.-+.. ..|++-|+.+|+.-++.
T Consensus 628 a~~~~~~~k~~~~q~v~~~~v~~Ai~em~~ 657 (767)
T KOG1514|consen 628 AEERNVKGKLAVSQLVGILHVMEAINEMLA 657 (767)
T ss_pred hhhhcccccccccceeehHHHHHHHHHHhh
Confidence 876654 67899999999987764
No 343
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=96.98 E-value=0.012 Score=69.03 Aligned_cols=137 Identities=15% Similarity=0.173 Sum_probs=87.2
Q ss_pred ceEEEEEeCCCCCCc--------hhHHHHHHHHHHHHHhh--cCCCCeEEEEEeeCCCc---------EEEcCCCc-cHH
Q 004256 562 ALVIFVVDASGSMAL--------NRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSA---------EVLLPPSR-SIA 621 (765)
Q Consensus 562 ~~vv~vvD~SgSM~~--------~rl~~ak~a~~~ll~~~--~~~~d~v~lv~F~~~~a---------~~~~p~t~-~~~ 621 (765)
-.|+||||+|.||-. +.+..+..++..++.+. ..+.|.||||.|+.+.. .++.++.. +..
T Consensus 11 eailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~~~L~~p~a~ 90 (584)
T TIGR00578 11 DSLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAK 90 (584)
T ss_pred eEEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEEeeCCCCCHH
Confidence 568999999999952 46778887888887754 45889999999987522 23334432 333
Q ss_pred HHHHHhhcCCC-----------C-C-CChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCC
Q 004256 622 MARKRLERLPC-----------G-G-GSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDA 688 (765)
Q Consensus 622 ~~~~~l~~l~~-----------g-G-~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~ 688 (765)
.++. |+.|.. | + ..+|..+|..|.+++..... . -+...|+|+||-..-.+-+
T Consensus 91 ~i~~-L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~-k-~~~kRI~lfTd~D~P~~~~------------ 155 (584)
T TIGR00578 91 RILE-LDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQF-R-MSHKRIMLFTNEDNPHGND------------ 155 (584)
T ss_pred HHHH-HHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcch-h-hcCcEEEEECCCCCCCCCc------------
Confidence 3322 222221 1 1 13789999999999885322 1 1233689999865322100
Q ss_pred CCCCchhHHHHHHHHHHHHHhCCCEEEEEe
Q 004256 689 PRPSSQELKDEILEVAGKIYKAGMSLLVID 718 (765)
Q Consensus 689 ~~~~~~~~~~~~~~~a~~~~~~gi~~~vig 718 (765)
....+.+...++.+...||.+-+|-
T Consensus 156 -----~~~~~~a~~~a~dl~~~gi~ielf~ 180 (584)
T TIGR00578 156 -----SAKASRARTKAGDLRDTGIFLDLMH 180 (584)
T ss_pred -----hhHHHHHHHHHHHHHhcCeEEEEEe
Confidence 1233455667888999998876664
No 344
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.97 E-value=0.00098 Score=67.26 Aligned_cols=59 Identities=22% Similarity=0.278 Sum_probs=34.8
Q ss_pred CCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC----CCCCcchHHHhhhhcceeec
Q 004256 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP----EEGVVREHLLDRIAINLSAD 296 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~----~eg~l~~~L~dRf~~~v~i~ 296 (765)
.-+|+|||+..++......|+..+.... +++++++-.+. ..|..-..+.......+.+.
T Consensus 94 ~~vliVDEasmv~~~~~~~ll~~~~~~~-------------~klilvGD~~QL~pV~~g~~~~~l~~~~~~~~~L~ 156 (196)
T PF13604_consen 94 KDVLIVDEASMVDSRQLARLLRLAKKSG-------------AKLILVGDPNQLPPVGAGSPFADLQESGGITVELT 156 (196)
T ss_dssp TSEEEESSGGG-BHHHHHHHHHHS-T-T--------------EEEEEE-TTSHHHCSTTCHHHHHCGCSTTEEEE-
T ss_pred ccEEEEecccccCHHHHHHHHHHHHhcC-------------CEEEEECCcchhcCCcCCcHHHHHHhcCCCeEEeC
Confidence 4599999999999999999999886621 24667774442 23444344444444333443
No 345
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.93 E-value=0.0051 Score=63.15 Aligned_cols=131 Identities=21% Similarity=0.142 Sum_probs=73.2
Q ss_pred CeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcc----hHHHhhhhcceeecCCCCH
Q 004256 226 GVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVR----EHLLDRIAINLSADLPMTF 301 (765)
Q Consensus 226 GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~----~~L~dRf~~~v~i~~p~~~ 301 (765)
-++++||.+.|..+....|..+.+--. ++. .+..+.+||-....+. ++ .++-+|+.+.+++. |.+.
T Consensus 133 v~l~vdEah~L~~~~le~Lrll~nl~~-----~~~---~~l~ivL~Gqp~L~~~-lr~~~l~e~~~R~~ir~~l~-P~~~ 202 (269)
T COG3267 133 VVLMVDEAHDLNDSALEALRLLTNLEE-----DSS---KLLSIVLIGQPKLRPR-LRLPVLRELEQRIDIRIELP-PLTE 202 (269)
T ss_pred eEEeehhHhhhChhHHHHHHHHHhhcc-----ccc---CceeeeecCCcccchh-hchHHHHhhhheEEEEEecC-CcCh
Confidence 378899999999998888777654211 111 1234555553221111 11 35567887753443 3333
Q ss_pred hhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Q 004256 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (765)
Q Consensus 302 e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~ 381 (765)
++-.+-+... ++ .+ -.+.--++++++..+..... | -+|..-.++..|...
T Consensus 203 ~~t~~yl~~~---Le---------------------~a--~~~~~l~~~~a~~~i~~~sq--g--~P~lin~~~~~Al~~ 252 (269)
T COG3267 203 AETGLYLRHR---LE---------------------GA--GLPEPLFSDDALLLIHEASQ--G--IPRLINNLATLALDA 252 (269)
T ss_pred HHHHHHHHHH---Hh---------------------cc--CCCcccCChhHHHHHHHHhc--c--chHHHHHHHHHHHHH
Confidence 3233333211 11 11 11112345555555543222 2 378888899999999
Q ss_pred HHHcCCCCCCHHHHH
Q 004256 382 AALEGREKVNVDDLK 396 (765)
Q Consensus 382 A~l~gr~~Vt~edv~ 396 (765)
|+..|++.|+...++
T Consensus 253 a~~a~~~~v~~a~~~ 267 (269)
T COG3267 253 AYSAGEDGVSEAEIK 267 (269)
T ss_pred HHHcCCCccchhhcc
Confidence 999999999887764
No 346
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.93 E-value=0.00012 Score=68.16 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=20.4
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.+.++|+|++|+|||++++.+...+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 46799999999999999999998764
No 347
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=96.91 E-value=0.0012 Score=73.87 Aligned_cols=196 Identities=18% Similarity=0.203 Sum_probs=123.6
Q ss_pred CCceeechHHHHHHH--Hhh----hcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcch------hcccccCCCCCCCC--
Q 004256 94 LAAVVGQDAIKTALL--LGA----IDREIGGIAISGRRGTAKTVMARGLHAILPPIEV------VVGSIANADPTCPD-- 159 (765)
Q Consensus 94 f~~ivG~~~~~~aL~--l~~----~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~------~~~~~~~~~~~~~~-- 159 (765)
|.++.|.++.+..+. ..- .......+++.||.|.|||+++..+-+.+.+..+ ..+||++.+|-+-.
T Consensus 75 f~~ffG~eesI~~~v~~~~~aa~~le~~kqiL~LlGPVggGKSsl~e~lk~~~e~~pi~~~~~~~~~sPv~e~PL~Lf~p 154 (649)
T COG2766 75 FNDFFGMEESIEQIVGYFKHAAQGLEERKQILYLLGPVGGGKSSLAERLKRLMERVPIYDLDANGKGSPVHESPLHLFPP 154 (649)
T ss_pred HhhhccHHHHHHHHHHHHhhhhhccchhhhhheeeccCCCchHHHHHHHHHHhhhCCceecccccCcCCCcCCCcccCCH
Confidence 578899888777662 111 1222345999999999999999999988765322 34799888886433
Q ss_pred -ccc-------------------ccccccccccccCcccccccCCCeEe-------------CCC----CCcccceeeec
Q 004256 160 -EWE-------------------DGLDEKAEYDTAGNLKTQIARSPFVQ-------------IPL----GVTEDRLIGSV 202 (765)
Q Consensus 160 -~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~v~-------------l~~----~~~e~~L~G~~ 202 (765)
..- +.+..++.-.-.+.+ ...+++. +++ +-.+..|.|.+
T Consensus 155 d~l~~~~e~~ygi~~~~~~~~lsP~~~~rL~~E~~gdi----~~~~Vv~~~~S~~r~~gIg~~eP~D~~nQD~s~L~G~V 230 (649)
T COG2766 155 DHLADDLEHEYGIRRRRLEGDLSPWARKRLDHEYGGDI----EKFAVVKLNPSILRRIGIGKTEPGDENNQDISALTGKV 230 (649)
T ss_pred HHhhhhhhhhccchhhhccCCCCHHHHHHHHHHhCCcc----ceeEEEEeecchhccceeeecCCCCCCCcchhHhhccc
Confidence 111 111111110000111 1111111 111 13345788888
Q ss_pred ccccccccCCCc----ccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC
Q 004256 203 DVEESVKTGTTV----FQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE 278 (765)
Q Consensus 203 d~e~~~~~g~~~----~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e 278 (765)
|+.+-..-|... ...|.|.++++|++=+-|.-..+.+++..||.+-++|.+.- .++.-..|.+=+||+.+|-.|
T Consensus 231 di~kL~~yge~DP~Aysy~Gal~~aNrGl~ef~Em~K~~~k~L~~lLtaTQEg~~k~--~~~~~~i~~d~lIvahsNesE 308 (649)
T COG2766 231 DISKLEHYGESDPRAYSYSGALCRANRGLMEFVEMFKAPIKVLHPLLTATQEGNYKG--TEGIGAIPFDGLIVAHSNESE 308 (649)
T ss_pred cHHHHhhcccCCchhhcccchhhcccchHHHHHHHHhCcHHHHHHHhcccccCccCC--CCCcCccccCceEEeecCcHH
Confidence 876654444332 23689999999999999999999999999999999998433 332334667778899999533
Q ss_pred ------CCcchHHHhhhhcceeec
Q 004256 279 ------GVVREHLLDRIAINLSAD 296 (765)
Q Consensus 279 ------g~l~~~L~dRf~~~v~i~ 296 (765)
.+-.++|+||+-.+ .+.
T Consensus 309 ~q~fk~n~~nEAf~dRi~~v-~vP 331 (649)
T COG2766 309 WQTFKNNKNNEAFLDRIYKV-KVP 331 (649)
T ss_pred HHHhhcCCchHHHHhheeee-ecc
Confidence 23457999999654 553
No 348
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=96.90 E-value=0.021 Score=59.19 Aligned_cols=167 Identities=21% Similarity=0.295 Sum_probs=108.2
Q ss_pred ceEEEEEeCCCCCCc-----hhHHHHHHHHHHHHHhhc--CCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCC-CC
Q 004256 562 ALVIFVVDASGSMAL-----NRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLP-CG 633 (765)
Q Consensus 562 ~~vv~vvD~SgSM~~-----~rl~~ak~a~~~ll~~~~--~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~-~g 633 (765)
+.++++||+|.+|.. .|......-+..++...| .+=.++++|...+.-+..+.....+...-...|..+. ..
T Consensus 88 Rhl~l~lD~Seam~e~Df~p~r~a~vikya~~Fv~eFf~qNPiSqlsii~irdg~a~~~s~~~gnpq~hi~~lkS~rd~~ 167 (421)
T COG5151 88 RHLHLILDVSEAMDESDFLPTRRANVIKYAEGFVPEFFSQNPISQLSIISIRDGCAKYTSSMDGNPQAHIGQLKSKRDCS 167 (421)
T ss_pred heeEEEEEhhhhhhhhhccchHHHHHHHHHHHHhHHHhccCCchheeeeehhhhHHHHhhhcCCCHHHHHHHhhcccccC
Confidence 578899999999964 343322223334433333 3457899999887766666666778877777777775 56
Q ss_pred CCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCE
Q 004256 634 GGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMS 713 (765)
Q Consensus 634 G~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~ 713 (765)
|.-.|..||+.|.-.+......+. +-++|++ |.-.. .|| .++.+....+...+|+
T Consensus 168 gnfSLqNaLEmar~~l~~~~~H~t--rEvLiif--gS~st------------~DP---------gdi~~tid~Lv~~~Ir 222 (421)
T COG5151 168 GNFSLQNALEMARIELMKNTMHGT--REVLIIF--GSTST------------RDP---------GDIAETIDKLVAYNIR 222 (421)
T ss_pred CChhHHhHHHHhhhhhcccccccc--eEEEEEE--eeccc------------CCC---------ccHHHHHHHHHhhceE
Confidence 777899999998544443332221 3334443 22110 011 3456666778888999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHc----CCeEEEcCCCChHHHHHHHHHH
Q 004256 714 LLVIDTENKFVSTGFAKEIARVA----QGKYYYLPNASDAVISATTKDA 758 (765)
Q Consensus 714 ~~vig~~~~~~~~~~l~~LA~~~----gG~y~~~~~~~~~~l~~~~~~~ 758 (765)
+.+||... .....++|..++ .|+|+.+ .++..+..+++..
T Consensus 223 V~~igL~a---evaicKeickaTn~~~e~~y~v~--vde~Hl~el~~E~ 266 (421)
T COG5151 223 VHFIGLCA---EVAICKEICKATNSSTEGRYYVP--VDEGHLSELMREL 266 (421)
T ss_pred EEEEeehh---HHHHHHHHHhhcCcCcCceeEee--ecHHHHHHHHHhc
Confidence 99999876 467899999999 5777655 3566677766653
No 349
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.02 Score=61.46 Aligned_cols=119 Identities=21% Similarity=0.214 Sum_probs=69.0
Q ss_pred eeEEeccchhhhhhhccC---CceEE-EEEeCCCCCCchhHHHHHHHHHHHHHhhc-CCCCeEEEEEeeCCCcEEEcCCC
Q 004256 543 KVFVEKTDMRAKRMARKA---GALVI-FVVDASGSMALNRMQNAKGAALKLLAESY-TCRDQVSIIPFRGDSAEVLLPPS 617 (765)
Q Consensus 543 ~~~i~~~dl~~~~~~~~~---~~~vv-~vvD~SgSM~~~rl~~ak~a~~~ll~~~~-~~~d~v~lv~F~~~~a~~~~p~t 617 (765)
++....+|+|.+..+.++ ...|| .+.|+||||....-..||.. .-+|...+ ..-++|-+|..+.+.....+.-+
T Consensus 224 RvPf~d~DlRf~~~~~~p~pes~AVmfclMDvSGSM~~~~KdlAkrF-F~lL~~FL~~kYenveivfIrHht~A~EVdE~ 302 (423)
T COG2718 224 RVPFIDEDLRYKRYEKVPKPESNAVMFCLMDVSGSMDQSEKDLAKRF-FFLLYLFLRRKYENVEIVFIRHHTEAKEVDET 302 (423)
T ss_pred cCCccccchhccCCccccCCccceEEEEEEecCCCcchHHHHHHHHH-HHHHHHHHhcccceeEEEEEeecCcceecchh
Confidence 343334999998766433 23344 45799999986554556643 23333233 23356666555544111122111
Q ss_pred ccHHHHHHHhhcCCCCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCC
Q 004256 618 RSIAMARKRLERLPCGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRA 671 (765)
Q Consensus 618 ~~~~~~~~~l~~l~~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~ 671 (765)
-.-...-+|||-++.||..+.+++........ -....+=.|||..
T Consensus 303 --------dFF~~~esGGTivSSAl~~m~evi~ErYp~ae-WNIY~fqaSDGDN 347 (423)
T COG2718 303 --------DFFYSQESGGTIVSSALKLMLEVIKERYPPAE-WNIYAFQASDGDN 347 (423)
T ss_pred --------hceeecCCCCeEeHHHHHHHHHHHHhhCChhh-eeeeeeeecCCcc
Confidence 11233457999999999999999987432211 1335677899983
No 350
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=96.70 E-value=0.088 Score=55.80 Aligned_cols=162 Identities=17% Similarity=0.217 Sum_probs=99.4
Q ss_pred ceEEEEEeCCCCCCc-----hhHHHHHHHHHHHHHh--hcCCCCeEEEEEeeCCCcEEEcCCCc--------c-------
Q 004256 562 ALVIFVVDASGSMAL-----NRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGDSAEVLLPPSR--------S------- 619 (765)
Q Consensus 562 ~~vv~vvD~SgSM~~-----~rl~~ak~a~~~ll~~--~~~~~d~v~lv~F~~~~a~~~~p~t~--------~------- 619 (765)
..+++|||++..-.+ ..+..+-.++..|+.. ++....+|+||+...+....+.|... +
T Consensus 2 SLLvIILD~nP~~W~~~~~~~~l~~~l~~llvFlNahL~l~~~N~vaVIAs~~~~s~~LYP~~~~~~~~~~~~~~~~~~~ 81 (276)
T PF03850_consen 2 SLLVIILDTNPLAWGQLSDQLSLSQFLDSLLVFLNAHLALNHSNQVAVIASHSNSSKFLYPSPSSSESSNSGDVEMNSSD 81 (276)
T ss_pred cEEEEEEECCHHHHhhccccccHHHHHHHHHHHHHHHHhhCccCCEEEEEEcCCccEEEeCCCccccccCCCcccccccc
Confidence 568899999986643 1333444444444332 46788999999998887888888655 0
Q ss_pred --------------HHHHHHHhhcCCCC----CCChhHHHHHHHHHHHHhhhccCC----CCceEEEE-EeCCCCCCCCC
Q 004256 620 --------------IAMARKRLERLPCG----GGSPLAHGLSMAVRVGLNAEKSGD----VGRIMIVA-ITDGRANISLK 676 (765)
Q Consensus 620 --------------~~~~~~~l~~l~~g----G~T~l~~aL~~A~~~l~~~~~~~~----~~~~~vvl-iTDG~~n~~~~ 676 (765)
.+.+++.++..... ..+.|+.||..|+-.+.+..+... .-++.|++ +| +.+...
T Consensus 82 ~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s-~s~d~~-- 158 (276)
T PF03850_consen 82 SNKYRQFRNVDETVLEELKKLMSETSESSDSTTSSLLAGALSMALCYINRISRESPSGGTSLKSRILVIVS-GSPDSS-- 158 (276)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEe-cCCCcc--
Confidence 01222233332221 127899999999988877643321 22334444 33 322211
Q ss_pred CCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCC
Q 004256 677 RSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNA 746 (765)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~ 746 (765)
.+. --+....-.+++.+|.+-++-.+.. +..+|++.+..|||.|+.+++.
T Consensus 159 -----------------~QY-i~~MN~iFaAqk~~v~IDv~~L~~~--~s~fLqQa~d~T~G~y~~~~~~ 208 (276)
T PF03850_consen 159 -----------------SQY-IPLMNCIFAAQKQKVPIDVCKLGGK--DSTFLQQASDITGGIYLKVSKP 208 (276)
T ss_pred -----------------HHH-HHHHHHHHHHhcCCceeEEEEecCC--chHHHHHHHHHhCceeeccCcc
Confidence 011 1224445556678887766666652 5789999999999999999864
No 351
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.70 E-value=0.0015 Score=71.92 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=25.1
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
...||.|+|++|+|||+|.-.+.+.+|
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp 87 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLP 87 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCC
Confidence 468899999999999999999999887
No 352
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.70 E-value=0.0081 Score=63.87 Aligned_cols=57 Identities=16% Similarity=0.150 Sum_probs=43.2
Q ss_pred CCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeec
Q 004256 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~ 296 (765)
.-|++||+++.|..+.++.||..|++- |.++++|-.++ ....+.+-+.+|.-.+ .+.
T Consensus 96 ~kv~ii~~ad~mt~~AaNaLLK~LEEP-------------p~~~~fiL~~~-~~~~ll~TI~SRcq~~-~~~ 152 (290)
T PRK05917 96 YKIYIIHEADRMTLDAISAFLKVLEDP-------------PQHGVIILTSA-KPQRLPPTIRSRSLSI-HIP 152 (290)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhhcC-------------CCCeEEEEEeC-ChhhCcHHHHhcceEE-Ecc
Confidence 459999999999999999999999974 23445555444 5567778899998654 453
No 353
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0064 Score=70.65 Aligned_cols=143 Identities=13% Similarity=0.121 Sum_probs=77.1
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCcccc
Q 004256 118 GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDR 197 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~ 197 (765)
-||+.|+|||||+++++++++.+.. +++.++|...-++
T Consensus 433 ~vLLhG~~g~GK~t~V~~vas~lg~------------------------------------------h~~evdc~el~~~ 470 (953)
T KOG0736|consen 433 SVLLHGPPGSGKTTVVRAVASELGL------------------------------------------HLLEVDCYELVAE 470 (953)
T ss_pred EEEEeCCCCCChHHHHHHHHHHhCC------------------------------------------ceEeccHHHHhhc
Confidence 3999999999999999999998863 2333333211111
Q ss_pred eeeecccc-cccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC
Q 004256 198 LIGSVDVE-ESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP 276 (765)
Q Consensus 198 L~G~~d~e-~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~ 276 (765)
--++.... ...+..+....|-.|-..|--+|-+|.-+-.+..++..+-..+....... . -..+++|++++.
T Consensus 471 s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~-------~-~~~~ivv~t~~s 542 (953)
T KOG0736|consen 471 SASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKF-------S-CPPVIVVATTSS 542 (953)
T ss_pred ccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccC-------C-CCceEEEEeccc
Confidence 11100000 01122222334444444444455555444444555555555554111101 1 125788999884
Q ss_pred CCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHH
Q 004256 277 EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIAT 312 (765)
Q Consensus 277 ~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~ 312 (765)
...+++.+..-|-..+.+.. ++.++|.+|++...
T Consensus 543 -~~~lp~~i~~~f~~ei~~~~-lse~qRl~iLq~y~ 576 (953)
T KOG0736|consen 543 -IEDLPADIQSLFLHEIEVPA-LSEEQRLEILQWYL 576 (953)
T ss_pred -cccCCHHHHHhhhhhccCCC-CCHHHHHHHHHHHH
Confidence 44567777777766666664 46777777776443
No 354
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.60 E-value=0.0031 Score=57.05 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=31.7
Q ss_pred CCeEeccccccCCHH----HHHHHHHHHHcCceEEEeCCee---EEeeCceEEEEeec
Q 004256 225 RGVLYIDEINLLDEG----ISNLLLNVLTEGVNIVEREGIS---FKHPCKPLLIATYN 275 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~----~q~~Ll~~l~~~~~~v~r~G~~---~~~p~~~~lIat~N 275 (765)
..++++||+...... ....|+++++.....+.-.+.. ....+ -.||+|+|
T Consensus 50 q~vvi~DD~~~~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s-~~vi~tsN 106 (107)
T PF00910_consen 50 QPVVIIDDFGQDNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNS-KLVIITSN 106 (107)
T ss_pred CcEEEEeecCccccccchHHHHHHHHHHhcCCcccccccHhhCCCccCC-CEEEEcCC
Confidence 358999999988754 6778888888776544333322 11222 35667776
No 355
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=96.50 E-value=0.32 Score=48.57 Aligned_cols=169 Identities=13% Similarity=0.143 Sum_probs=101.2
Q ss_pred CCceEEEEEeCCCCCC------chhHHHHHHHHHHHH--HhhcCCCCeEEEEEeeCCCcEEEcCCCcc------------
Q 004256 560 AGALVIFVVDASGSMA------LNRMQNAKGAALKLL--AESYTCRDQVSIIPFRGDSAEVLLPPSRS------------ 619 (765)
Q Consensus 560 ~~~~vv~vvD~SgSM~------~~rl~~ak~a~~~ll--~~~~~~~d~v~lv~F~~~~a~~~~p~t~~------------ 619 (765)
+|..++++||.-.--. +.+..... .+.-+| ..++....||++|+=.+++...+.|...+
T Consensus 19 spslL~viid~~p~~W~~~~ek~~~~kvl~-di~VFLNAhlaf~~~NrVaVva~~s~~~~yLypss~s~~k~se~e~tr~ 97 (296)
T COG5242 19 SPSLLFVIIDLEPENWELTTEKGSRDKVLN-DIVVFLNAHLAFSRNNRVAVVAGYSQGKTYLYPSSESALKASESENTRN 97 (296)
T ss_pred CCceEEEEEecChhhcccccccccHHHHHH-HHHHHHHHHHhhccCCeEEEEEeccCceEEeccCcchhhhhhcccCccc
Confidence 4788888899866443 22322222 222222 23567889999998766667778776532
Q ss_pred --------------HHHHHHHhhcCC-CCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeC-CCCCCCCCCCCCccc
Q 004256 620 --------------IAMARKRLERLP-CGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITD-GRANISLKRSTDPEA 683 (765)
Q Consensus 620 --------------~~~~~~~l~~l~-~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTD-G~~n~~~~~~~~~~~ 683 (765)
+..+.+.++.-. ....+.++.|+..++.+..+..... .-+..|+++|= |+.-.
T Consensus 98 sd~yrrfr~vde~~i~eiyrl~e~~~k~sqr~~v~gams~glay~n~~~~e~-slkSriliftlsG~d~~---------- 166 (296)
T COG5242 98 SDMYRRFRNVDETDITEIYRLIEHPHKNSQRYDVGGAMSLGLAYCNHRDEET-SLKSRILIFTLSGRDRK---------- 166 (296)
T ss_pred hhhhhhhcccchHHHHHHHHHHhCcccccceeehhhhhhhhHHHHhhhcccc-cccceEEEEEecCchhh----------
Confidence 223333333222 2345788888888888876654332 22344555554 54211
Q ss_pred CCCCCCCCCchhHHHH--HHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHHH
Q 004256 684 TASDAPRPSSQELKDE--ILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDA 758 (765)
Q Consensus 684 ~~~~~~~~~~~~~~~~--~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~~ 758 (765)
.+. .....-.+.+.||++-++.++.+ ..++.+-++++||.|..+++. +.+.+.+...
T Consensus 167 -------------~qYip~mnCiF~Aqk~~ipI~v~~i~g~---s~fl~Q~~daTgG~Yl~ve~~--eGllqyL~~~ 225 (296)
T COG5242 167 -------------DQYIPYMNCIFAAQKFGIPISVFSIFGN---SKFLLQCCDATGGDYLTVEDT--EGLLQYLLSL 225 (296)
T ss_pred -------------hhhchhhhheeehhhcCCceEEEEecCc---cHHHHHHhhccCCeeEeecCc--hhHHHHHHHH
Confidence 011 12222234578899999988773 579999999999999999864 3455554443
No 356
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.47 E-value=0.049 Score=61.65 Aligned_cols=151 Identities=15% Similarity=0.152 Sum_probs=104.3
Q ss_pred CceEEEEEeCCCCCC---------------chhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCc-------EEEcCCC-
Q 004256 561 GALVIFVVDASGSMA---------------LNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSA-------EVLLPPS- 617 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~---------------~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a-------~~~~p~t- 617 (765)
..++.+-||-+.|-. -+-...|-.++-..|. .|....++.-..|+..-. .-.+...
T Consensus 285 ~lnf~vgIDfTaSNg~p~~~sSLHyi~p~~~N~Y~~Ai~~vG~~lq-~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~ 363 (529)
T KOG1327|consen 285 QLNFTVGIDFTASNGDPRNPSSLHYIDPHQPNPYEQAIRSVGETLQ-DYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNP 363 (529)
T ss_pred eeeeEEEEEEeccCCCCCCCCcceecCCCCCCHHHHHHHHHhhhhc-ccCCCCccccccccccCCCCcccccceeecCCC
Confidence 478889999999942 1456677767777776 788888999889976610 0111111
Q ss_pred -----cc----HHHHHHHhhcCCCCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCC
Q 004256 618 -----RS----IAMARKRLERLPCGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDA 688 (765)
Q Consensus 618 -----~~----~~~~~~~l~~l~~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~ 688 (765)
.. ...-++.+..+...|.|+.+.-+..+++...+... ....--++++||||.-+.
T Consensus 364 ~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~-~~~qY~VLlIitDG~vTd--------------- 427 (529)
T KOG1327|consen 364 EDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGN-TAGQYHVLLIITDGVVTD--------------- 427 (529)
T ss_pred CCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhcc-CCcceEEEEEEeCCcccc---------------
Confidence 12 23445566678889999999999999999877653 222234889999999652
Q ss_pred CCCCchhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCC
Q 004256 689 PRPSSQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQG 738 (765)
Q Consensus 689 ~~~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG 738 (765)
..+..+++-.+-.....|++||.|++ +.+.|++|=...+-
T Consensus 428 --------m~~T~~AIV~AS~lPlSIIiVGVGd~--df~~M~~lD~d~~~ 467 (529)
T KOG1327|consen 428 --------MKETRDAIVSASDLPLSIIIVGVGDA--DFDMMRELDGDDPK 467 (529)
T ss_pred --------HHHHHHHHHhhccCCeEEEEEEeCCC--CHHHHHHhhcCCcc
Confidence 14445555555677889999999976 57788888554443
No 357
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.30 E-value=0.013 Score=61.11 Aligned_cols=96 Identities=17% Similarity=0.244 Sum_probs=60.7
Q ss_pred ceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCChhHHH
Q 004256 562 ALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHG 641 (765)
Q Consensus 562 ~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~gG~T~l~~a 641 (765)
..++++||+||||...-+.++-.-+..++. -++-+.-||..+.. +.-.+..... ..+ =..+-.||||++..+
T Consensus 262 ~~i~vaVDtSGS~~d~ei~a~~~Ei~~Il~---~~~~eltli~~D~~-v~~~~~~r~g-~~~---~~~~~ggG~Tdf~Pv 333 (396)
T COG3864 262 IKIVVAVDTSGSMTDAEIDAAMTEIFDILK---NKNYELTLIECDNI-VRRMYRVRKG-RDM---KKKLDGGGGTDFSPV 333 (396)
T ss_pred hheEEEEecCCCccHHHHHHHHHHHHHHHh---CCCcEEEEEEecch-hhhhhccCCc-ccC---CcccCCCCCccccHH
Confidence 348899999999987667776666777763 46778888877665 3222221111 111 113446778999888
Q ss_pred HHHHHHHHHhhhccCCCCceEEEEEeCCCCCCC
Q 004256 642 LSMAVRVGLNAEKSGDVGRIMIVAITDGRANIS 674 (765)
Q Consensus 642 L~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~ 674 (765)
+.. +.+.... ..+|.+|||...++
T Consensus 334 fey----lek~~~~-----~~lIyfTDG~gd~p 357 (396)
T COG3864 334 FEY----LEKNRME-----CFLIYFTDGMGDQP 357 (396)
T ss_pred HHH----HHhhccc-----ceEEEEccCCCCcc
Confidence 765 3433321 26889999997654
No 358
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.28 E-value=0.0012 Score=71.15 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=23.6
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..+++|+|++|||||.|+.+|+..+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998764
No 359
>PF05729 NACHT: NACHT domain
Probab=96.25 E-value=0.0074 Score=58.20 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.8
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
-++|.|++|+|||++++.+...+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh
Confidence 4799999999999999999977653
No 360
>PRK13695 putative NTPase; Provisional
Probab=96.24 E-value=0.0084 Score=59.11 Aligned_cols=70 Identities=20% Similarity=0.143 Sum_probs=42.6
Q ss_pred cCCeEeccccccC---CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCC-CCCcchHHHhhhhcceeecCCC
Q 004256 224 HRGVLYIDEINLL---DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-EGVVREHLLDRIAINLSADLPM 299 (765)
Q Consensus 224 ~~GiL~lDEi~~L---~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~-eg~l~~~L~dRf~~~v~i~~p~ 299 (765)
...+|+|||+..+ +...++.|..+++.+. .+|+++|.. -..+-..+..|.+..+ +. -
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~----------------~~i~v~h~~~~~~~~~~i~~~~~~~i-~~--~ 156 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLDSEK----------------PVIATLHRRSVHPFVQEIKSRPGGRV-YE--L 156 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHhCCC----------------eEEEEECchhhHHHHHHHhccCCcEE-EE--E
Confidence 3458999996543 5566777777776553 466777742 1234556666666654 33 2
Q ss_pred CHhhHHHHHHHHH
Q 004256 300 TFEDRVAAVGIAT 312 (765)
Q Consensus 300 ~~e~r~dI~~l~~ 312 (765)
+++.|.++...+.
T Consensus 157 ~~~~r~~~~~~~~ 169 (174)
T PRK13695 157 TPENRDSLPFEIL 169 (174)
T ss_pred cchhhhhHHHHHH
Confidence 5666667766543
No 361
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.18 E-value=0.0092 Score=71.94 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.8
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..-++|.|+||||||+++++|...+.
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~ 363 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAE 363 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999988765
No 362
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=96.18 E-value=0.4 Score=48.92 Aligned_cols=166 Identities=16% Similarity=0.149 Sum_probs=101.6
Q ss_pred CCceEEEEEeCCCCCCc--h--hHHHHHHHHHHHHHhhc--------CCCCeEEEEEeeCCCc-----EEEcCCCccHHH
Q 004256 560 AGALVIFVVDASGSMAL--N--RMQNAKGAALKLLAESY--------TCRDQVSIIPFRGDSA-----EVLLPPSRSIAM 622 (765)
Q Consensus 560 ~~~~vv~vvD~SgSM~~--~--rl~~ak~a~~~ll~~~~--------~~~d~v~lv~F~~~~a-----~~~~p~t~~~~~ 622 (765)
....||||||.+..|+. + |-...--.+..+-.... .....+|||+|+.... -...++|.+...
T Consensus 12 ~~~~vVfvvEgTAalgpy~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~~~~~v~~~g~T~~~~~ 91 (226)
T PF11265_consen 12 PQAQVVFVVEGTAALGPYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCYPEPIVQRSGPTSSPQK 91 (226)
T ss_pred ccceEEEEEecchhhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCCcccceeccCCcCCHHH
Confidence 45889999999999984 1 22222222222211000 1346889999976621 235678899999
Q ss_pred HHHHhhcCCC-CCC----ChhHHHHHHHHHHHHhhh--cc--C-CCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCC
Q 004256 623 ARKRLERLPC-GGG----SPLAHGLSMAVRVGLNAE--KS--G-DVGRIMIVAITDGRANISLKRSTDPEATASDAPRPS 692 (765)
Q Consensus 623 ~~~~l~~l~~-gG~----T~l~~aL~~A~~~l~~~~--~~--~-~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~ 692 (765)
+.++|++++- ||| +.+++||..|++++.... +. . .......|||+---|..-... .. ..
T Consensus 92 fl~~L~~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP~~~p~~--~~---------~~ 160 (226)
T PF11265_consen 92 FLQWLDAIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPPYRLPVN--EC---------PQ 160 (226)
T ss_pred HHHHHHccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCCcccccc--CC---------Cc
Confidence 9999999984 333 348999999998876422 11 1 111345688876544321110 00 00
Q ss_pred chhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEE
Q 004256 693 SQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYY 742 (765)
Q Consensus 693 ~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~ 742 (765)
.......+++..+.+.+|.+.+|..-. ...++.|=+..++.-..
T Consensus 161 --~~~~~~d~la~~~~~~~I~LSiisPrk----lP~l~~Lfeka~~~~~~ 204 (226)
T PF11265_consen 161 --YSGKTCDQLAVLISERNISLSIISPRK----LPSLRSLFEKAKGNPRA 204 (226)
T ss_pred --ccCCCHHHHHHHHHhcCceEEEEcCcc----CHHHHHHHHhcCCCccc
Confidence 001234567777778999999998743 45788888887776544
No 363
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.14 E-value=0.013 Score=59.19 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=48.8
Q ss_pred CeEeccccccCCHHHHHHHHHHHHcCceEEEeC--CeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeec
Q 004256 226 GVLYIDEINLLDEGISNLLLNVLTEGVNIVERE--GISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (765)
Q Consensus 226 GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~--G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~ 296 (765)
-++.|||++.+....++.|-.++......+.+. .....+|-.+.+|||+|..+-.-++-=-.||-.+ .+.
T Consensus 97 ~iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v-~v~ 168 (198)
T PF05272_consen 97 WIVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPV-EVS 168 (198)
T ss_pred HheeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEE-EEc
Confidence 478899999999888999999998887766553 2345678889999999964311111123577443 454
No 364
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.12 E-value=0.0063 Score=58.31 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.9
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
++|+|++|+|||+++..++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999988764
No 365
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.12 E-value=0.17 Score=58.52 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=22.0
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-+||+||+||||||+++.|++.+.
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999875
No 366
>PRK04296 thymidine kinase; Provisional
Probab=96.11 E-value=0.015 Score=58.40 Aligned_cols=22 Identities=14% Similarity=-0.087 Sum_probs=19.1
Q ss_pred EEEECCCCcHHHHHHHHHHhhC
Q 004256 119 IAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
++|+|++|+||||++..++..+
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHH
Confidence 7899999999999998877654
No 367
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=96.07 E-value=0.17 Score=51.95 Aligned_cols=173 Identities=18% Similarity=0.241 Sum_probs=100.6
Q ss_pred CCceEEEEEeCCC---CCCc---h--hHHHHHHHHHHHHH--hhcCCCCeEEEEEeeCCCcEEEcC--------------
Q 004256 560 AGALVIFVVDASG---SMAL---N--RMQNAKGAALKLLA--ESYTCRDQVSIIPFRGDSAEVLLP-------------- 615 (765)
Q Consensus 560 ~~~~vv~vvD~Sg---SM~~---~--rl~~ak~a~~~ll~--~~~~~~d~v~lv~F~~~~a~~~~p-------------- 615 (765)
.+..++++||++. -|.. + -+...-.++..|+. .++....+|+||+...+....+.|
T Consensus 22 ~~slL~vlId~~p~~Wg~~as~~~~~ti~kvl~aivVFlNAHL~~~~~NrvaViA~~~q~~~~lyp~st~~e~~n~~~~~ 101 (314)
T KOG2487|consen 22 NPSLLVVLIDANPCSWGMLASAENWETISKVLNAIVVFLNAHLAFSRNNRVAVIASHSQVDNYLYPSSTRCEDRNASELD 101 (314)
T ss_pred CceeEEEEEecCcchhhhhhhhcCceeHHHHHHHHHHHHHHHHhhccCCcEEEEEecccccceeccccccCCccCccccC
Confidence 4678889999998 3321 1 23333344555543 245678999999998776777777
Q ss_pred CCc----c-----------HHHHHHHhhcCC---CCCCChhHHHHHHHHHHHHhhhccC--CCCceEEEEEeCCCCCCCC
Q 004256 616 PSR----S-----------IAMARKRLERLP---CGGGSPLAHGLSMAVRVGLNAEKSG--DVGRIMIVAITDGRANISL 675 (765)
Q Consensus 616 ~t~----~-----------~~~~~~~l~~l~---~gG~T~l~~aL~~A~~~l~~~~~~~--~~~~~~vvliTDG~~n~~~ 675 (765)
+++ . .+.+.+.+..-. .+..|-++.+|..++-.+.+..+.. ...+..|+++|=++.-. +
T Consensus 102 ~t~~~~~~y~~~~~~d~tiv~ei~~lm~~~~~~~~~~rt~lagals~~L~yi~~~~ke~~~~~lkSRilV~t~t~d~~-~ 180 (314)
T KOG2487|consen 102 PTRLVLFDYSEFRTVDDTIVEEIYRLMEHPDKYDVGDRTVLAGALSDALGYINRLHKEEASEKLKSRILVFTLTRDRA-L 180 (314)
T ss_pred chhhhcchhhhhcccchHHHHHHHHHHhCccccccccceeeccchhhccchHhhhhhhhhhhhhhceEEEEEechHHH-h
Confidence 441 0 122233332211 1225666666666665554433322 01134567777654211 0
Q ss_pred CCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHH
Q 004256 676 KRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATT 755 (765)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~ 755 (765)
. .--.....=.+++.+|.+-++..++ +.+++++-++.|||.|.+++..+ .+.+++
T Consensus 181 q--------------------yi~~MNciFaAqKq~I~Idv~~l~~---~s~~LqQa~D~TGG~YL~v~~~~--gLLqyL 235 (314)
T KOG2487|consen 181 Q--------------------YIPYMNCIFAAQKQNIPIDVVSLGG---DSGFLQQACDITGGDYLHVEKPD--GLLQYL 235 (314)
T ss_pred h--------------------hhhHHHHHHHHHhcCceeEEEEecC---CchHHHHHHhhcCCeeEecCCcc--hHHHHH
Confidence 0 0112333344567788888888877 36899999999999999998653 455555
Q ss_pred HHH
Q 004256 756 KDA 758 (765)
Q Consensus 756 ~~~ 758 (765)
-..
T Consensus 236 lt~ 238 (314)
T KOG2487|consen 236 LTL 238 (314)
T ss_pred HHH
Confidence 443
No 368
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.05 E-value=0.0072 Score=62.97 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=43.1
Q ss_pred CCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcc
Q 004256 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAIN 292 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~ 292 (765)
.-|++|++++.|.....++||..|++- |.+..+|-.++ ....+.+-+.+|.-.+
T Consensus 89 ~KV~II~~ae~m~~~AaNaLLK~LEEP-------------p~~t~fiLit~-~~~~lLpTI~SRCq~~ 142 (261)
T PRK05818 89 KKIYIIYGIEKLNKQSANSLLKLIEEP-------------PKNTYGIFTTR-NENNILNTILSRCVQY 142 (261)
T ss_pred CEEEEeccHhhhCHHHHHHHHHhhcCC-------------CCCeEEEEEEC-ChHhCchHhhhheeee
Confidence 459999999999999999999999984 34556666665 5667788999997553
No 369
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=95.92 E-value=0.12 Score=55.98 Aligned_cols=71 Identities=11% Similarity=0.003 Sum_probs=41.6
Q ss_pred CCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCee-EEeeCceEEEEeecCCC--CCcchHHHhhhhcceeec
Q 004256 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGIS-FKHPCKPLLIATYNPEE--GVVREHLLDRIAINLSAD 296 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~-~~~p~~~~lIat~N~~e--g~l~~~L~dRf~~~v~i~ 296 (765)
.-+++.||+..-...-.+.|-.+.....+.+++-+.. ......+.+|.++|.-+ ...+.++.+|+-++ .+.
T Consensus 129 k~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~~a~~RR~~vi-~f~ 202 (304)
T TIGR01613 129 KRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFDGGIKRRLRII-PFT 202 (304)
T ss_pred CEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCChhheeeEEEE-ecc
Confidence 3477889987432222244444454555666665543 34455678889999533 23457888998543 443
No 370
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=95.90 E-value=0.099 Score=49.99 Aligned_cols=119 Identities=17% Similarity=0.272 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCc-----EEEcCCCc--------c----HHHHHHHhhcCCCCCCChhH
Q 004256 577 NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSA-----EVLLPPSR--------S----IAMARKRLERLPCGGGSPLA 639 (765)
Q Consensus 577 ~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a-----~~~~p~t~--------~----~~~~~~~l~~l~~gG~T~l~ 639 (765)
+..+.|-.++...|. .|..+..+-+..|++... .-.+|++. . .+.-++.+..+...|-|.++
T Consensus 11 N~Y~~ai~~vg~il~-~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v~l~GPT~fa 89 (146)
T PF07002_consen 11 NPYQQAIRAVGEILQ-DYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKVQLSGPTNFA 89 (146)
T ss_pred CHHHHHHHHHHHHHH-hhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhheEECCCccHH
Confidence 556667777778776 778888999999987621 11234431 1 23445667778889999999
Q ss_pred HHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEEEeC
Q 004256 640 HGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLVIDT 719 (765)
Q Consensus 640 ~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vig~ 719 (765)
.-+..|.+.... .......--+++++|||.-+. .++..++.-.+.+..+.+++||+
T Consensus 90 piI~~a~~~a~~-~~~~~~~Y~iLlIlTDG~i~D-----------------------~~~T~~aIv~AS~~PlSIIiVGV 145 (146)
T PF07002_consen 90 PIINHAAKIAKQ-SNQNGQQYFILLILTDGQITD-----------------------MEETIDAIVEASKLPLSIIIVGV 145 (146)
T ss_pred HHHHHHHHHHhh-hccCCceEEEEEEeccccccc-----------------------HHHHHHHHHHHccCCeEEEEEEe
Confidence 999999999875 222222345889999999641 14445555556678899999997
Q ss_pred C
Q 004256 720 E 720 (765)
Q Consensus 720 ~ 720 (765)
|
T Consensus 146 G 146 (146)
T PF07002_consen 146 G 146 (146)
T ss_pred C
Confidence 6
No 371
>PHA02624 large T antigen; Provisional
Probab=95.85 E-value=0.03 Score=64.63 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=25.2
Q ss_pred CCCCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 114 REIGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 114 ~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
|...-+||+||+|||||+++.+|.+.+..
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G 457 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGG 457 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 44556999999999999999999999853
No 372
>PHA02774 E1; Provisional
Probab=95.84 E-value=0.023 Score=65.25 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=24.6
Q ss_pred CCCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 114 ~~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|....++|+||||||||++|-+|.+.+.
T Consensus 432 PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 432 PKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4456799999999999999999999874
No 373
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.83 E-value=0.02 Score=67.39 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=34.8
Q ss_pred CCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC----CCCCcchHHHh
Q 004256 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP----EEGVVREHLLD 287 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~----~eg~l~~~L~d 287 (765)
..+|+|||...++..+...|++++..+. ++++||=.+. +.|..-.+|..
T Consensus 266 ~dvlIvDEaSMvd~~lm~~ll~al~~~~--------------rlIlvGD~~QL~sV~~G~VL~DL~~ 318 (615)
T PRK10875 266 LDVLVVDEASMVDLPMMARLIDALPPHA--------------RVIFLGDRDQLASVEAGAVLGDICR 318 (615)
T ss_pred CCeEEEChHhcccHHHHHHHHHhcccCC--------------EEEEecchhhcCCCCCCchHHHHHH
Confidence 3599999999999999999999876543 5667774332 34554455553
No 374
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=0.19 Score=59.24 Aligned_cols=181 Identities=15% Similarity=0.157 Sum_probs=110.9
Q ss_pred ccCCceEEEEEeCCCCCCchh-HHHHHHHHHHHHHhh--cCCCCeEEEEEeeCCC--------------------cEEEc
Q 004256 558 RKAGALVIFVVDASGSMALNR-MQNAKGAALKLLAES--YTCRDQVSIIPFRGDS--------------------AEVLL 614 (765)
Q Consensus 558 ~~~~~~vv~vvD~SgSM~~~r-l~~ak~a~~~ll~~~--~~~~d~v~lv~F~~~~--------------------a~~~~ 614 (765)
.-.+...+|+||+|-.--.+. ...+-+++..+|.+. ..++-+||+|+|+... .++.+
T Consensus 414 ~p~ppafvFmIDVSy~Ai~~G~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s~L~qp~mliVsdv~dvfv 493 (1007)
T KOG1984|consen 414 PPKPPAFVFMIDVSYNAISNGAVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSSNLAQPQMLIVSDVDDVFV 493 (1007)
T ss_pred CCCCceEEEEEEeehhhhhcchHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCccccCceEEEeeccccccc
Confidence 445788999999986553322 234455666666643 3456899999997651 11223
Q ss_pred CCC--------ccHHHHHHHhhcCCC---CC---CChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCC
Q 004256 615 PPS--------RSIAMARKRLERLPC---GG---GSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTD 680 (765)
Q Consensus 615 p~t--------~~~~~~~~~l~~l~~---gG---~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~ 680 (765)
|+- .+...++..|+.++. +. -|-++.+|+.|...|+... .+ -|++++--.++.+..+-..
T Consensus 494 Pf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~~-gG-----Kl~vF~s~Lpt~g~g~kl~ 567 (1007)
T KOG1984|consen 494 PFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAAD-GG-----KLFVFHSVLPTAGAGGKLS 567 (1007)
T ss_pred ccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhccC-Cc-----eEEEEecccccccCccccc
Confidence 322 355667777777652 22 3568899999988877654 22 2566666666665442111
Q ss_pred cccCCCCCCCCCchh-----HHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCC
Q 004256 681 PEATASDAPRPSSQE-----LKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPN 745 (765)
Q Consensus 681 ~~~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~ 745 (765)
...+ .-.....++. ...-...+|..+.+.|+.+-++-|...+++...+-.+.+.|||+.|.-..
T Consensus 568 ~r~D-~~l~~t~kek~l~~pq~~~y~~LA~e~v~~g~svDlF~t~~ayvDvAtlg~v~~~TgG~vy~Y~~ 636 (1007)
T KOG1984|consen 568 NRDD-RRLIGTDKEKNLLQPQDKTYTTLAKEFVESGCSVDLFLTPNAYVDVATLGVVPALTGGQVYKYYP 636 (1007)
T ss_pred ccch-hhhhcccchhhccCcchhHHHHHHHHHHHhCceEEEEEcccceeeeeeecccccccCceeEEecc
Confidence 0000 0000000000 00224678999999999998888888888888888889999999666544
No 375
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.72 E-value=0.068 Score=57.46 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=44.5
Q ss_pred cCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeec
Q 004256 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (765)
Q Consensus 224 ~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~ 296 (765)
..-|++||+++.+....++.||..|++- |....+|..++ ....+-+.+..|...+ .+.
T Consensus 90 ~~KvvII~~~e~m~~~a~NaLLK~LEEP-------------p~~t~~il~~~-~~~kll~TI~SRc~~~-~f~ 147 (299)
T PRK07132 90 QKKILIIKNIEKTSNSLLNALLKTIEEP-------------PKDTYFLLTTK-NINKVLPTIVSRCQVF-NVK 147 (299)
T ss_pred CceEEEEecccccCHHHHHHHHHHhhCC-------------CCCeEEEEEeC-ChHhChHHHHhCeEEE-ECC
Confidence 5569999999999999999999999873 34555665555 4467778888888664 565
No 376
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.68 E-value=0.022 Score=63.27 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=25.1
Q ss_pred CCCCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 114 REIGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 114 ~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
.....++|.|+.|||||++.++|...+..
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 45677999999999999999999988753
No 377
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.65 E-value=0.028 Score=66.06 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.4
Q ss_pred CCeEeccccccCCHHHHHHHHHHHHcC
Q 004256 225 RGVLYIDEINLLDEGISNLLLNVLTEG 251 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~~q~~Ll~~l~~~ 251 (765)
-.+|+|||+..++..+...|++++..+
T Consensus 260 ~dvlIiDEaSMvd~~l~~~ll~al~~~ 286 (586)
T TIGR01447 260 LDVLVVDEASMVDLPLMAKLLKALPPN 286 (586)
T ss_pred ccEEEEcccccCCHHHHHHHHHhcCCC
Confidence 359999999999999999999987544
No 378
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.64 E-value=0.0071 Score=55.46 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=20.6
Q ss_pred EEEECCCCcHHHHHHHHHHhhC
Q 004256 119 IAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
|+|.|+||+||||+|+.|++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999975
No 379
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.60 E-value=0.0087 Score=59.02 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=28.6
Q ss_pred eeechHHHHHHHHhh--h-cCCCCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 97 VVGQDAIKTALLLGA--I-DREIGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 97 ivG~~~~~~aL~l~~--~-~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
++|.+..++.|.-.. . ......++|+|++|+|||++.+.+...+..
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 689999888883222 2 223456999999999999999988876653
No 380
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.58 E-value=0.0087 Score=62.69 Aligned_cols=56 Identities=21% Similarity=0.364 Sum_probs=38.7
Q ss_pred ceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCC
Q 004256 219 LLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV 280 (765)
Q Consensus 219 ll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~ 280 (765)
-+...++.++++||++.|++.+.+.|-.+|+-.. ...|.... +.++|.-+|....+
T Consensus 173 ~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp---~v~gv~fr---kaIFIfLSN~gg~e 228 (344)
T KOG2170|consen 173 TVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYP---QVSGVDFR---KAIFIFLSNAGGSE 228 (344)
T ss_pred HHHhcCCceEEechhhhcCHhHHHHHhhhhcccc---cccccccc---ceEEEEEcCCcchH
Confidence 3445567899999999999999999999998422 12232222 45778888854333
No 381
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.50 E-value=0.0092 Score=56.38 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.3
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|++.|+||+||||+|+.++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999998775
No 382
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.49 E-value=0.058 Score=57.08 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=23.6
Q ss_pred CCCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 114 ~~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
...+.|+|.|++|+||||+++++...++
T Consensus 78 ~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 78 KPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 3456799999999999999999877664
No 383
>PRK14700 recombination factor protein RarA; Provisional
Probab=95.47 E-value=0.042 Score=58.18 Aligned_cols=104 Identities=14% Similarity=0.071 Sum_probs=72.5
Q ss_pred ceEEEEeecCCCC-CcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccC-
Q 004256 267 KPLLIATYNPEEG-VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLK- 344 (765)
Q Consensus 267 ~~~lIat~N~~eg-~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~- 344 (765)
.+++||+|+..+. .+.++|++|.-++ .+. |...+....|+.++... ....+
T Consensus 8 ~i~LIGATTENP~f~vn~ALlSR~~v~-~l~-~L~~~di~~il~ral~~-------------------------~~~~~~ 60 (300)
T PRK14700 8 KIILIGATTENPTYYLNDALVSRLFIL-RLK-RLSLVATQKLIEKALSQ-------------------------DEVLAK 60 (300)
T ss_pred cEEEEeecCCCccceecHhhhhhhhee-eec-CCCHHHHHHHHHHHHHh-------------------------hhccCC
Confidence 3689999986664 6889999999876 576 66777666666644321 01112
Q ss_pred -CccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 004256 345 -DVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (765)
Q Consensus 345 -nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~l 401 (765)
++.++++++++|+..| ++ ..|..+++++.|...+.-.+...||.++|++++..
T Consensus 61 ~~~~i~~~al~~ia~~a---~G-DaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~ 114 (300)
T PRK14700 61 HKFKIDDGLYNAMHNYN---EG-DCRKILNLLERMFLISTRGDEIYLNKELFDQAVGE 114 (300)
T ss_pred cCCCcCHHHHHHHHHhc---CC-HHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhH
Confidence 4889999999998765 33 47999999999764332122224899999888753
No 384
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.017 Score=69.53 Aligned_cols=149 Identities=20% Similarity=0.313 Sum_probs=83.3
Q ss_pred CCceeec--hHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccc
Q 004256 94 LAAVVGQ--DAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (765)
Q Consensus 94 f~~ivG~--~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (765)
+.-++|. +++++.+.+..- ....+-+|+|++|+|||.++.-+++....
T Consensus 185 ldPvigr~deeirRvi~iL~R-rtk~NPvLVG~~gvgktaiv~gla~ri~~----------------------------- 234 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-KTKNNPVLVGEPGVGKTAIVEGLAQRIAT----------------------------- 234 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-cCCCCceEEecCCCCchhHHHHHHHHhhc-----------------------------
Confidence 3557886 556666643322 23367888999999999999999986542
Q ss_pred cccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceee---ccCC-eEeccccccCCH--------H
Q 004256 172 DTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRG-VLYIDEINLLDE--------G 239 (765)
Q Consensus 172 ~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~---A~~G-iL~lDEi~~L~~--------~ 239 (765)
|..+.......++.+..+. .+.|... ++-+.+. ..+++.+ ..+| ||||||++.+-. +
T Consensus 235 ---G~vp~~l~~~~l~~l~~g~---l~aGa~~--rge~E~r---lk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d 303 (898)
T KOG1051|consen 235 ---GDVPETLKDKKLIALDFGS---LVAGAKR--RGEFEER---LKELLKEVESGGGGVILFLGELHWLVGSGSNYGAID 303 (898)
T ss_pred ---CCCCccccccceEEEEhhh---cccCccc--chHHHHH---HHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHH
Confidence 1111111223344333332 1112100 1111111 1122222 3344 789999998732 4
Q ss_pred HHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC----CcchHHHhhhhcceeecCCC
Q 004256 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPM 299 (765)
Q Consensus 240 ~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg----~l~~~L~dRf~~~v~i~~p~ 299 (765)
..+.|-..+..|. +++|+|+.-++. +-.|+|-.||..+ .+..|.
T Consensus 304 ~~nlLkp~L~rg~---------------l~~IGatT~e~Y~k~iekdPalErrw~l~-~v~~pS 351 (898)
T KOG1051|consen 304 AANLLKPLLARGG---------------LWCIGATTLETYRKCIEKDPALERRWQLV-LVPIPS 351 (898)
T ss_pred HHHhhHHHHhcCC---------------eEEEecccHHHHHHHHhhCcchhhCccee-EeccCc
Confidence 4555555555543 688998875443 3458888999987 477664
No 385
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=95.21 E-value=0.22 Score=56.12 Aligned_cols=199 Identities=14% Similarity=0.130 Sum_probs=104.7
Q ss_pred cCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHh--hcCCCCeEEEEEeeCC----------------------------
Q 004256 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGD---------------------------- 608 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~--~~~~~d~v~lv~F~~~---------------------------- 608 (765)
.-|.++++|+|.|+||. +.++..|.....|+.. .+...-|+|+=.|-+.
T Consensus 100 ~yPvDLYyLmDlS~Sm~-ddl~~l~~lg~~l~~~~~~it~~~~~GfGsfvdK~~~P~~~~~p~~l~~pc~~~~~~c~~~~ 178 (426)
T PF00362_consen 100 DYPVDLYYLMDLSYSMK-DDLENLKSLGQDLAEEMRNITSNFRLGFGSFVDKPVMPFVSTTPEKLKNPCPSKNPNCQPPF 178 (426)
T ss_dssp S--EEEEEEEE-SGGGH-HHHHHHCCCCHHHHHHHHTT-SSEEEEEEEESSSSSTTTST-SSHCHHSTSCCTTS--B---
T ss_pred ccceeEEEEeechhhhh-hhHHHHHHHHHHHHHHHHhcCccceEechhhcccccCCcccCChhhhcCcccccCCCCCCCe
Confidence 34899999999999997 3333333322232221 3456778888888433
Q ss_pred CcEEEcCCCccHHHHHHHhhcCCCCCCCh----hHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccC
Q 004256 609 SAEVLLPPSRSIAMARKRLERLPCGGGSP----LAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEAT 684 (765)
Q Consensus 609 ~a~~~~p~t~~~~~~~~~l~~l~~gG~T~----l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~ 684 (765)
.-.-.+++|.+.......+.....+|.=+ .-+||..|+---..-..+. ..+.+||+.||+......++..+.-.
T Consensus 179 ~f~~~l~Lt~~~~~F~~~v~~~~is~n~D~PEgg~dal~Qa~vC~~~igWr~-~a~~llv~~TD~~fH~agDg~l~gi~- 256 (426)
T PF00362_consen 179 SFRHVLSLTDDITEFNEEVNKQKISGNLDAPEGGLDALMQAAVCQEEIGWRN-EARRLLVFSTDAGFHFAGDGKLAGIV- 256 (426)
T ss_dssp SEEEEEEEES-HHHHHHHHHTS--B--SSSSBSHHHHHHHHHH-HHHHT--S-TSEEEEEEEESS-B--TTGGGGGT---
T ss_pred eeEEeecccchHHHHHHhhhhccccCCCCCCccccchheeeeecccccCccc-CceEEEEEEcCCccccccccccceee-
Confidence 12345667778899999999887655322 2233333321111112222 23668999999876554332111000
Q ss_pred CCCCC----CCC------chhHHHHHHHHHHHHHhCCCE-EEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHH
Q 004256 685 ASDAP----RPS------SQELKDEILEVAGKIYKAGMS-LLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISA 753 (765)
Q Consensus 685 ~~~~~----~~~------~~~~~~~~~~~a~~~~~~gi~-~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~ 753 (765)
.|..+ ... ...-..-+-++.+.+.+.+|. ||.| +.. ....-++|+....|..+-.=..+...|..
T Consensus 257 ~pnd~~Chl~~~~~y~~~~~~DYPSv~ql~~~l~e~~i~~IFAV-t~~---~~~~Y~~L~~~i~~s~vg~L~~dSsNIv~ 332 (426)
T PF00362_consen 257 KPNDGKCHLDDNGMYTASTEQDYPSVGQLVRKLSENNINPIFAV-TKD---VYSIYEELSNLIPGSSVGELSSDSSNIVQ 332 (426)
T ss_dssp S---SS--BSTTSBBGGGGCS----HHHHHHHHHHTTEEEEEEE-EGG---GHHHHHHHHHHSTTEEEEEESTTSHTHHH
T ss_pred ecCCCceEECCCCcccccccccCCCHHHHHHHHHHcCCEEEEEE-chh---hhhHHHHHhhcCCCceecccccCchhHHH
Confidence 01000 000 001123457778888888864 4444 333 24578999999888877655556678999
Q ss_pred HHHHHHHhhhc
Q 004256 754 TTKDALSALKN 764 (765)
Q Consensus 754 ~~~~~~~~~~~ 764 (765)
+++.+-..+.+
T Consensus 333 LI~~aY~~i~s 343 (426)
T PF00362_consen 333 LIKEAYNKISS 343 (426)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHHhh
Confidence 99988777643
No 386
>PRK08118 topology modulation protein; Reviewed
Probab=95.09 E-value=0.016 Score=56.92 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=22.2
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|++|+||||+|+.|++.+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999875
No 387
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=95.08 E-value=0.024 Score=55.52 Aligned_cols=43 Identities=12% Similarity=0.048 Sum_probs=34.4
Q ss_pred cccchhHHHHHHhcCCCcccccCCCCccccCCCCccHHHHHHHHHHHHHHH
Q 004256 21 HLQQSCSVVSSLKLHPLLFSYSPPPFFKFRTRPKHHRFFHVRASSSNATLD 71 (765)
Q Consensus 21 ~~~~~~~~~~~~~~g~~~~d~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (765)
.-..+..+|++||.| |.|||+|||.... ++..+++|+......
T Consensus 84 GhgDIpmaV~AmK~G--AvDFLeKP~~~q~------Lldav~~Al~~~~~~ 126 (202)
T COG4566 84 GHGDIPMAVQAMKAG--AVDFLEKPFSEQD------LLDAVERALARDASR 126 (202)
T ss_pred CCCChHHHHHHHHcc--hhhHHhCCCchHH------HHHHHHHHHHHHHHH
Confidence 445678899999999 9999999997544 788888888764433
No 388
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.02 E-value=0.027 Score=54.65 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=19.2
Q ss_pred cEEEECCCCcHHHHHHHHHHh
Q 004256 118 GIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
.++|+|-|||||||+++.|..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~ 22 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLRE 22 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHH
Confidence 478999999999999999993
No 389
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.02 E-value=0.018 Score=66.70 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=25.1
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
.+..+||.||+|+|||++.|+|+.+-|-
T Consensus 418 ~G~~llI~G~SG~GKTsLlRaiaGLWP~ 445 (604)
T COG4178 418 PGERLLITGESGAGKTSLLRALAGLWPW 445 (604)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCcc
Confidence 3466999999999999999999999884
No 390
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.94 E-value=0.076 Score=49.89 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=26.9
Q ss_pred HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 108 LLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 108 ~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.++..-+...-|+|.|+.|+||||++|.+.+.+.
T Consensus 14 ~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 14 AFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3444334455699999999999999999999875
No 391
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.92 E-value=0.12 Score=64.36 Aligned_cols=59 Identities=20% Similarity=0.339 Sum_probs=40.2
Q ss_pred cCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC----CCCCcchHHHhhhhcceeec
Q 004256 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP----EEGVVREHLLDRIAINLSAD 296 (765)
Q Consensus 224 ~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~----~eg~l~~~L~dRf~~~v~i~ 296 (765)
.+.+|+|||+..++......|+..+.... +++++||=.+. ..|..-..|..+++.. .+.
T Consensus 468 ~~~vlVIDEAsMv~~~~m~~Ll~~~~~~g-------------arvVLVGD~~QL~~V~aG~~f~~l~~~i~~a-~Lt 530 (1102)
T PRK13826 468 NKTVFVLDEAGMVASRQMALFVEAVTRAG-------------AKLVLVGDPEQLQPIEAGAAFRAIADRIGYA-ELE 530 (1102)
T ss_pred CCcEEEEECcccCCHHHHHHHHHHHHhcC-------------CEEEEECCHHHcCCCCCCcHHHHHHhhcCEE-Eee
Confidence 35699999999999999999999886321 35677774432 2344445677777643 454
No 392
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.91 E-value=0.017 Score=53.22 Aligned_cols=22 Identities=45% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEECCCCcHHHHHHHHHHhhC
Q 004256 119 IAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
|+|.|.+||||||+|+.|...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999985
No 393
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.89 E-value=0.021 Score=47.14 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=20.6
Q ss_pred EEEECCCCcHHHHHHHHHHhhC
Q 004256 119 IAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
+.|.|++|+|||++++.+.+.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 394
>PRK07261 topology modulation protein; Provisional
Probab=94.60 E-value=0.025 Score=55.71 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.5
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|++|+||||+|+.|+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999988754
No 395
>PHA00729 NTP-binding motif containing protein
Probab=94.58 E-value=0.022 Score=58.25 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=22.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
.+|+|+|+||||||++|.+|+..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999865
No 396
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.50 E-value=0.027 Score=55.80 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=22.2
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|+||+||||+|+.|++.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999865
No 397
>PF13245 AAA_19: Part of AAA domain
Probab=94.47 E-value=0.033 Score=47.01 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=18.5
Q ss_pred CcEEEECCCCcHHH-HHHHHHHhhC
Q 004256 117 GGIAISGRRGTAKT-VMARGLHAIL 140 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt-~lAr~l~~~l 140 (765)
+-++|.|+|||||| ++++.++.+.
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 33556999999999 7777777765
No 398
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.45 E-value=0.032 Score=54.46 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=23.5
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
...|+|.|++|||||++|+.|++.+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999999875
No 399
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.31 Score=53.03 Aligned_cols=167 Identities=19% Similarity=0.226 Sum_probs=97.5
Q ss_pred cccCCceeeccCCeEeccccccC---CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCC-CC---------C
Q 004256 214 VFQPGLLAEAHRGVLYIDEINLL---DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-EG---------V 280 (765)
Q Consensus 214 ~~~~Gll~~A~~GiL~lDEi~~L---~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~-eg---------~ 280 (765)
..++|++..-+ ++.+||+... +++....|-++|+.|. ++|........+.+++++--|.. |+ .
T Consensus 268 trqiGlvg~wD--vVaFDEVagirFkdkDg~qilKDYMaSGs--f~RG~~~v~~~ASlVFvGNvnqs~E~lvktshL~~p 343 (683)
T COG4930 268 TRQIGLVGLWD--VVAFDEVAGIRFKDKDGMQILKDYMASGS--FERGDKKVVSDASLVFVGNVNQSSEGLVKTSHLTYP 343 (683)
T ss_pred hccccceeeee--eeeehhhccccccCccHHHHHHHHHhcCC--cccccccccccceEEEEecccccccceeehhhcccc
Confidence 44677765433 8889999765 5668889999999999 88877777777777788776642 22 1
Q ss_pred c-----chHHHhhhhcceeecCCCCHhhHHHHHHHHH-HHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHH
Q 004256 281 V-----REHLLDRIAINLSADLPMTFEDRVAAVGIAT-QFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLK 354 (765)
Q Consensus 281 l-----~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~-~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~ 354 (765)
| +.+++|||.-.+ | -.+ |+...- ||-. ++-...+-.++....-+. -.++ +.+.
T Consensus 344 fPeaM~DtAFfDR~H~yi----P-GWE----iPK~rpehft~-------rYG~isDY~AE~~reMRK----rS~s-d~i~ 402 (683)
T COG4930 344 FPEAMRDTAFFDRIHGYI----P-GWE----IPKIRPEHFTK-------RYGVISDYFAEALREMRK----RSLS-DLIG 402 (683)
T ss_pred CchhhhhhHHHHHHhccC----c-ccc----CccCCHHHhcc-------ccchHHHHHHHHHHHHHH----HHHH-HHHH
Confidence 2 246788886553 1 111 222111 1111 111111111111111110 0111 2334
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCcC
Q 004256 355 YLVMEALRGGCQGHRAELYAARVAKCLAA-LEGREKVNVDDLKKAVELVILPRSI 408 (765)
Q Consensus 355 ~l~~~a~~~g~~s~Ra~i~llr~A~a~A~-l~gr~~Vt~edv~~A~~lvl~hR~~ 408 (765)
+.+++...+ ..|..+..-|+..-+-. |.-....+.++++..++++|--|++
T Consensus 403 rf~kLgnNl---nqRDviavkrt~SGLlKLL~Pd~t~~kee~k~ileyAle~RrR 454 (683)
T COG4930 403 RFVKLGNNL---NQRDVIAVKRTTSGLLKLLFPDKTFDKEELKTILEYALELRRR 454 (683)
T ss_pred HHHHhcccc---chhhhHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 444444333 55888888777665554 4556789999999999999987765
No 400
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.37 E-value=0.015 Score=58.87 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=18.5
Q ss_pred cCCeEeccccccCCHHHHHHHHHHHHcC
Q 004256 224 HRGVLYIDEINLLDEGISNLLLNVLTEG 251 (765)
Q Consensus 224 ~~GiL~lDEi~~L~~~~q~~Ll~~l~~~ 251 (765)
++.+++|||...++++....++.-+.++
T Consensus 119 ~~~~iIvDEaQN~t~~~~k~ilTR~g~~ 146 (205)
T PF02562_consen 119 DNAFIIVDEAQNLTPEELKMILTRIGEG 146 (205)
T ss_dssp -SEEEEE-SGGG--HHHHHHHHTTB-TT
T ss_pred cceEEEEecccCCCHHHHHHHHcccCCC
Confidence 3578999999999999888887755443
No 401
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.36 E-value=0.03 Score=55.42 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=21.2
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|+|.|+||+||||+|+.|++.+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998764
No 402
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.36 E-value=0.24 Score=50.27 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=21.7
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|.|.|++|+||||+|+.|+..++
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhC
Confidence 77899999999999999999986
No 403
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=94.34 E-value=0.02 Score=63.78 Aligned_cols=166 Identities=15% Similarity=0.100 Sum_probs=91.2
Q ss_pred CCeEeccccccCC----H----HHHHHHHHHHHcCceEEEeCCee-EEe-eCceEEEEeecCCC-----------CCcch
Q 004256 225 RGVLYIDEINLLD----E----GISNLLLNVLTEGVNIVEREGIS-FKH-PCKPLLIATYNPEE-----------GVVRE 283 (765)
Q Consensus 225 ~GiL~lDEi~~L~----~----~~q~~Ll~~l~~~~~~v~r~G~~-~~~-p~~~~lIat~N~~e-----------g~l~~ 283 (765)
+..+|.||+..+- . .....|+++-+.+.+.+.|.+.. ..+ ...+.|++++.|.. .....
T Consensus 150 ~~l~~~dE~~~~~~~~~~~~~~~~~~~ll~~~dg~~~~~~R~~~~~~~i~~~~lsi~~~~QP~~l~~~~~~~~~~~~~~~ 229 (378)
T PF13148_consen 150 GLLLFSDEGGGLLNSMGRYGGGSDRDLLLKAWDGEPYSIDRKSRGSIYIENPRLSILGGIQPDVLKREILSAEDPEFRGD 229 (378)
T ss_pred eEEEEchhHHHHHHHhhcccCCccHHHHHHHhCCCCeeeeeccCCcccCCCceEEEEeccChHHHHHHHhhhhcccccCC
Confidence 3467788986552 2 44567888888777777776543 333 35677888888732 11334
Q ss_pred HHHhhhhcceeecCCCCH---hhHH-HHHHHHHHHHHhhHHHhccccccCcHHHHHHHHH-----hcccCCccCCHHHHH
Q 004256 284 HLLDRIAINLSADLPMTF---EDRV-AAVGIATQFQERSNEVFKMVEEETDLAKTQIILA-----REYLKDVAIGREQLK 354 (765)
Q Consensus 284 ~L~dRf~~~v~i~~p~~~---e~r~-dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a-----~~~~~nv~i~~~~l~ 354 (765)
-|+.||-+++.-.....+ .... ........|.... ..++.. ..-+..+.+++++.+
T Consensus 230 Gll~RfL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i---------------~~l~~~~~~~~~~~~~~l~ls~eA~~ 294 (378)
T PF13148_consen 230 GLLARFLFVIPDSRKGRRFEFPVPEPIDDEALEAYHERI---------------KELLDWPPEDGSDEPIVLELSDEAKE 294 (378)
T ss_pred ChHhheeeeccCcccccccccCCCCcccHHHHHHHHHHH---------------HHHHhhhhcccCCCCeEEecCHHHHH
Confidence 789999743211111111 0000 0001111111111 111111 112344677777766
Q ss_pred HHHHHHHhC-------CCC------CCChHHHHHHHHHHHHHHc-----CCCCCCHHHHHHHHHHhcCC
Q 004256 355 YLVMEALRG-------GCQ------GHRAELYAARVAKCLAALE-----GREKVNVDDLKKAVELVILP 405 (765)
Q Consensus 355 ~l~~~a~~~-------g~~------s~Ra~i~llr~A~a~A~l~-----gr~~Vt~edv~~A~~lvl~h 405 (765)
.+.++.... +.. -.|....++|+|..++.++ ....|+.+++..|+.++-.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~RlA~ilh~~~~~~~~~~~~I~~~~~~~Ai~l~~~~ 363 (378)
T PF13148_consen 295 LFREWYNELENELRQPGGDLAMRSFASKAAEQALRLALILHLFESGGSPPSTEISAETMERAIRLVEYF 363 (378)
T ss_pred HHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEECHHHHHHHHHHHHHH
Confidence 655543211 111 1255667899999999999 67899999999999887653
No 404
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.33 E-value=0.13 Score=56.60 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=23.7
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..+.|+|.||+|+||||+.+++...++
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 357799999999999999999988665
No 405
>PRK08233 hypothetical protein; Provisional
Probab=94.29 E-value=0.033 Score=54.94 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.8
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|.|.|++|+||||+|+.|+..++
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 378899999999999999999876
No 406
>PTZ00202 tuzin; Provisional
Probab=94.28 E-value=0.19 Score=56.08 Aligned_cols=51 Identities=18% Similarity=0.164 Sum_probs=37.6
Q ss_pred CCCCCceeechHHHHHHH--HhhhcCCC-CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 91 FFPLAAVVGQDAIKTALL--LGAIDREI-GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~--l~~~~~~~-~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
+.+...++|.+....+|. +...+... .-++|.|++|+|||+++|.+...++
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 445678999999888873 22232221 2478999999999999999998765
No 407
>PRK03839 putative kinase; Provisional
Probab=94.25 E-value=0.033 Score=55.18 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=22.1
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|.||+||||+++.|++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999875
No 408
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.23 E-value=0.066 Score=66.13 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=36.8
Q ss_pred cCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC----CCCCcchHHHhhhhc
Q 004256 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP----EEGVVREHLLDRIAI 291 (765)
Q Consensus 224 ~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~----~eg~l~~~L~dRf~~ 291 (765)
...+|+|||+..++......|+....... +++++|+=.+. +.|..-..|..+++.
T Consensus 433 ~~~vlIVDEASMv~~~~m~~LL~~a~~~g-------------arvVLVGD~~QLpsV~aG~~f~~L~~~~~~ 491 (988)
T PRK13889 433 SRDVLVIDEAGMVGTRQLERVLSHAADAG-------------AKVVLVGDPQQLQAIEAGAAFRSIHERHGG 491 (988)
T ss_pred cCcEEEEECcccCCHHHHHHHHHhhhhCC-------------CEEEEECCHHHcCCCCCCchHHHHHHhcCe
Confidence 45699999999999999999988664321 35667774332 334444566666654
No 409
>PRK06762 hypothetical protein; Provisional
Probab=94.23 E-value=0.034 Score=54.23 Aligned_cols=24 Identities=38% Similarity=0.492 Sum_probs=21.8
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.|.+|+||||+|+.|++.++
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999875
No 410
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.22 E-value=0.058 Score=65.41 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.1
Q ss_pred cCCeEeccccccCCHHHHHHHHHHHH
Q 004256 224 HRGVLYIDEINLLDEGISNLLLNVLT 249 (765)
Q Consensus 224 ~~GiL~lDEi~~L~~~~q~~Ll~~l~ 249 (765)
..-+|+|||+..++......|+....
T Consensus 439 ~~~llIvDEasMv~~~~~~~Ll~~~~ 464 (744)
T TIGR02768 439 DKDVLVIDEAGMVGSRQMARVLKEAE 464 (744)
T ss_pred CCcEEEEECcccCCHHHHHHHHHHHH
Confidence 45699999999999999888888554
No 411
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.12 E-value=0.034 Score=54.05 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.0
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
++|.|++|+||||+|+.|+..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999875
No 412
>PTZ00301 uridine kinase; Provisional
Probab=94.08 E-value=0.25 Score=50.36 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.8
Q ss_pred EEEECCCCcHHHHHHHHHHhhC
Q 004256 119 IAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
|.|.|++|+||||+|+.|.+.+
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHH
Confidence 7899999999999999998764
No 413
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.03 E-value=0.068 Score=49.48 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=30.9
Q ss_pred eeechHHHHHHHHh----hhcC-CCCc--EEEECCCCcHHHHHHHHHHhhCC
Q 004256 97 VVGQDAIKTALLLG----AIDR-EIGG--IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 97 ivG~~~~~~aL~l~----~~~~-~~~~--VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|.||.-+.+.+.-+ ..++ ...+ +-+.|++||||+.+++.|++.+-
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 78888766655211 1111 2334 44889999999999999999854
No 414
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.00 E-value=0.039 Score=54.44 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=22.1
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.|++|+||||+|+.|++.++
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 489999999999999999999875
No 415
>PRK14532 adenylate kinase; Provisional
Probab=93.98 E-value=0.041 Score=54.83 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.9
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
+|+|.|+||+||||+|+.|++.+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 416
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.97 E-value=0.1 Score=53.69 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEECCCCcHHHHHHHHHHhh
Q 004256 119 IAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
++|.|.||+|||++++.+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 578999999999999999886
No 417
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.92 E-value=0.043 Score=52.42 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.9
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
++|.|++|+||||+|+.|.+.+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcC
Confidence 68999999999999999998754
No 418
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.84 E-value=0.044 Score=52.38 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.9
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
+|+|.|++|+|||++|+.|+..+.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998765
No 419
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.80 E-value=0.061 Score=54.86 Aligned_cols=45 Identities=20% Similarity=0.165 Sum_probs=32.5
Q ss_pred eeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 97 VVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 97 ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
++|++...+.|.-..-......++|+||.|+|||++++.+...+.
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 367777777774333333457899999999999999999999874
No 420
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.80 E-value=0.12 Score=54.68 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=23.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
.+++|.|++|+||||+.+.+...++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 68999999999999999999998763
No 421
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=93.75 E-value=0.58 Score=54.71 Aligned_cols=190 Identities=19% Similarity=0.263 Sum_probs=108.4
Q ss_pred EeccchhhhhhhccCCceEEEEEeCCCCCCchhH-HHHHHHHHHHHHhh--cCCCCeEEEEEeeCCCcE-----------
Q 004256 546 VEKTDMRAKRMARKAGALVIFVVDASGSMALNRM-QNAKGAALKLLAES--YTCRDQVSIIPFRGDSAE----------- 611 (765)
Q Consensus 546 i~~~dl~~~~~~~~~~~~vv~vvD~SgSM~~~rl-~~ak~a~~~ll~~~--~~~~d~v~lv~F~~~~a~----------- 611 (765)
+-+.+...++ .+|..+||+||+|-.--.+++ ..+-.+++.-+... +.++.+|++|.|++. ..
T Consensus 264 ~ap~~Y~~~~---p~P~~yvFlIDVS~~a~~~g~~~a~~r~Il~~l~~~~~~dpr~kIaii~fD~s-l~ffk~s~d~~~~ 339 (861)
T COG5028 264 LAPKEYSLRQ---PPPPVYVFLIDVSFEAIKNGLVKAAIRAILENLDQIPNFDPRTKIAIICFDSS-LHFFKLSPDLDEQ 339 (861)
T ss_pred ecccceeecc---CCCCEEEEEEEeehHhhhcchHHHHHHHHHhhccCCCCCCCcceEEEEEEcce-eeEEecCCCCccc
Confidence 3344444433 248999999999975432332 23333444444311 346889999999765 21
Q ss_pred ---------EEcCCCc--------cH----HHHHHHhhcCCCCC---CChhHHHHHHHHHHHHhhhccCCCCceEEEEEe
Q 004256 612 ---------VLLPPSR--------SI----AMARKRLERLPCGG---GSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAIT 667 (765)
Q Consensus 612 ---------~~~p~t~--------~~----~~~~~~l~~l~~gG---~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliT 667 (765)
..+|... +. +.+...+..+..+- .-.++.||+.|..++.... | + ||.+.
T Consensus 340 ~~~vsdld~pFlPf~s~~fv~pl~~~k~~~etLl~~~~~If~d~~~pk~~~G~aLk~a~~l~g~~G--G---k--ii~~~ 412 (861)
T COG5028 340 MLIVSDLDEPFLPFPSGLFVLPLKSCKQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGGTG--G---K--IIVFL 412 (861)
T ss_pred eeeecccccccccCCcchhcccHHHHHHHHHHHHHHhhhhhcccCCCccccCHHHHHHHHHhhccC--c---e--EEEEe
Confidence 1122221 11 12333344444332 3468999999988765421 1 2 34444
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCC
Q 004256 668 DGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNAS 747 (765)
Q Consensus 668 DG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~ 747 (765)
--.+|.|.+.-.-.. ++....-..++ .-..+++..+-+.||.+-.+-+..++++..-+..|++-+||+-++-++.+
T Consensus 413 stlPn~G~Gkl~~r~--d~e~~ll~c~d--~fYk~~a~e~~k~gIsvd~Flt~~~yidvaTls~l~~~T~G~~~~Yp~f~ 488 (861)
T COG5028 413 STLPNMGIGKLQLRE--DKESSLLSCKD--SFYKEFAIECSKVGISVDLFLTSEDYIDVATLSHLCRYTGGQTYFYPNFS 488 (861)
T ss_pred ecCCCcccccccccc--cchhhhccccc--hHHHHHHHHHHHhcceEEEEeccccccchhhhcchhhccCcceEEcCCcc
Confidence 456777765321000 00000000000 11256777888999999999898888899999999999999977776666
Q ss_pred hHH
Q 004256 748 DAV 750 (765)
Q Consensus 748 ~~~ 750 (765)
+..
T Consensus 489 ~~~ 491 (861)
T COG5028 489 ATR 491 (861)
T ss_pred cCC
Confidence 554
No 422
>PRK13947 shikimate kinase; Provisional
Probab=93.75 E-value=0.047 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=22.6
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
+|+|.|.+|||||++++.|++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999999876
No 423
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.72 E-value=0.076 Score=54.15 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=16.0
Q ss_pred EEEECCCCcHHHHHHHHHHhhC
Q 004256 119 IAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
.+|.||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999996555555443
No 424
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.69 E-value=0.05 Score=53.73 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.7
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-++|.|++|+||||+++.|+..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998865
No 425
>PRK06217 hypothetical protein; Validated
Probab=93.66 E-value=0.051 Score=54.03 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=22.3
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|.+|+||||+++.|++.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999875
No 426
>PRK14530 adenylate kinase; Provisional
Probab=93.50 E-value=0.059 Score=55.10 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|+|.|+||+||||+++.|++.+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998875
No 427
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.48 E-value=0.059 Score=52.37 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=18.2
Q ss_pred EEEECCCCcHHHHHHHHHHhh
Q 004256 119 IAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
|.|+|.+|||||||++.|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 428
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.44 E-value=0.055 Score=53.61 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=21.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|+|.|+||+||||+++.|++.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3488999999999999999997653
No 429
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.42 E-value=0.058 Score=53.82 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.6
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|+||+||||+|+.|++.+.
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 389999999999999999998754
No 430
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.41 E-value=0.067 Score=43.12 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=21.8
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-.+|+|+.|+||||+.-+|.-.+-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 599999999999999999988764
No 431
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.34 E-value=0.11 Score=51.96 Aligned_cols=28 Identities=39% Similarity=0.614 Sum_probs=24.9
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
....++|.|++|+||||++++|..+++.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3578999999999999999999998763
No 432
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.33 E-value=0.052 Score=59.94 Aligned_cols=23 Identities=48% Similarity=0.525 Sum_probs=21.0
Q ss_pred cEEEECCCCcHHHHHHHHHHhhC
Q 004256 118 GIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
-++|.|.||||||.||-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 37899999999999999999877
No 433
>PRK13949 shikimate kinase; Provisional
Probab=93.30 E-value=0.066 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=22.4
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|++|+||||+++.|++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999999875
No 434
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.20 E-value=0.091 Score=57.44 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=25.7
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
...+|||.|++|+||||+.++|....|.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 4688999999999999999999998874
No 435
>COG1485 Predicted ATPase [General function prediction only]
Probab=93.20 E-value=0.069 Score=57.50 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=26.2
Q ss_pred cCCCCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 113 DREIGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 113 ~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
.....|+.++|+-|.|||.|.-.+...+|-
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence 334688999999999999999999998873
No 436
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.16 E-value=0.069 Score=50.50 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=21.0
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|+|.|++|||||++|+.|+..+.
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998764
No 437
>PRK14531 adenylate kinase; Provisional
Probab=93.06 E-value=0.069 Score=53.11 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=22.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|+|.|+||+||||+++.|++.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999998764
No 438
>PRK06547 hypothetical protein; Provisional
Probab=93.04 E-value=0.074 Score=52.46 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=21.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|+|.|++|+||||+|+.|++.+.
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3488889999999999999998754
No 439
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=93.03 E-value=0.062 Score=55.05 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=19.5
Q ss_pred CCcEEEECCCCcHHHHHHHHHH
Q 004256 116 IGGIAISGRRGTAKTVMARGLH 137 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~ 137 (765)
...+||+|+||||||++|+.+.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4569999999999999999874
No 440
>PRK00625 shikimate kinase; Provisional
Probab=93.02 E-value=0.073 Score=52.53 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=22.2
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
+|+|.|.||+||||+++.|++.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999865
No 441
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.02 E-value=0.076 Score=52.94 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..++|.|++|+||||+++.|+..+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4689999999999999999988764
No 442
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.95 E-value=0.072 Score=53.59 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=21.1
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|.|.|++|+||||+++.|..++.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999999874
No 443
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.95 E-value=0.069 Score=51.28 Aligned_cols=23 Identities=48% Similarity=0.579 Sum_probs=21.3
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|-|.|+|||||||+|+.|+..+.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 67899999999999999999876
No 444
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.93 E-value=0.08 Score=58.03 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=25.5
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
...++||.|++|+||||++++|...++.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCC
Confidence 5688999999999999999999998874
No 445
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.92 E-value=0.067 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=21.2
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|+|.|.+|+|||++|+.|...+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999874
No 446
>PRK04040 adenylate kinase; Provisional
Probab=92.77 E-value=0.075 Score=53.20 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=22.1
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|+|.||+||||+++.+++.++
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 489999999999999999999875
No 447
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.75 E-value=0.086 Score=50.98 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=24.1
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
...++|+||+|+|||++.|.++.+.+.
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhccCC
Confidence 456999999999999999999998764
No 448
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.74 E-value=0.079 Score=53.82 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|.|.|++|+|||||++.|...++
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999874
No 449
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.73 E-value=0.066 Score=56.74 Aligned_cols=28 Identities=39% Similarity=0.624 Sum_probs=25.6
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..++|+|.|++|+||||+++++....+.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 4688999999999999999999998875
No 450
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=8.3 Score=45.13 Aligned_cols=195 Identities=16% Similarity=0.122 Sum_probs=117.6
Q ss_pred cCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEE------------cCCC---------
Q 004256 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVL------------LPPS--------- 617 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~------------~p~t--------- 617 (765)
..+..++||||+= |....+...|.++...+. .+.+...||+|+|+.. +++. +.-+
T Consensus 119 ~~ppvf~fVvDtc--~~eeeL~~LkssL~~~l~-lLP~~alvGlItfg~~-v~v~el~~~~~sk~~VF~G~ke~s~~q~~ 194 (745)
T KOG1986|consen 119 VSPPVFVFVVDTC--MDEEELQALKSSLKQSLS-LLPENALVGLITFGTM-VQVHELGFEECSKSYVFSGNKEYSAKQLL 194 (745)
T ss_pred CCCceEEEEEeec--cChHHHHHHHHHHHHHHh-hCCCcceEEEEEecce-EEEEEcCCCcccceeEEeccccccHHHHH
Confidence 3466778999975 445788889987777664 7889999999999765 2221 1111
Q ss_pred ---------------------------ccHHHHHHHhhcCCC------CCCCh---hHHHHHHHHHHHHhhhccCCCCce
Q 004256 618 ---------------------------RSIAMARKRLERLPC------GGGSP---LAHGLSMAVRVGLNAEKSGDVGRI 661 (765)
Q Consensus 618 ---------------------------~~~~~~~~~l~~l~~------gG~T~---l~~aL~~A~~~l~~~~~~~~~~~~ 661 (765)
.....+...|++|.+ .|.-| .+.||..|..+|......- ..
T Consensus 195 ~~L~~~~~~~~~~~~~~~~~rFL~P~~~c~~~L~~lle~L~~d~wpV~~g~Rp~RcTG~Al~iA~~Ll~~c~p~~---g~ 271 (745)
T KOG1986|consen 195 DLLGLSGGAGKGSENQSASNRFLLPAQECEFKLTNLLEELQPDPWPVPPGHRPLRCTGVALSIASGLLEGCFPNT---GA 271 (745)
T ss_pred HHhcCCcccccCCcccccchhhhccHHHHHHHHHHHHHHhcCCCCCCCCCCCcccchhHHHHHHHHHhcccCCCC---cc
Confidence 111222333333332 12222 5667777777765543211 23
Q ss_pred EEEEEeCCCCCCCCCCCCCcccCCCCCC--------CCCchhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHH
Q 004256 662 MIVAITDGRANISLKRSTDPEATASDAP--------RPSSQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIA 733 (765)
Q Consensus 662 ~vvliTDG~~n~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA 733 (765)
.|++++-|-.+.|.+.-.+...-+|.-. .+=.+....-...+|+++...|..+-++...-..+..-.|+.++
T Consensus 272 rIv~f~gGPcT~GpG~vv~~el~~piRshhdi~~d~a~y~kKa~KfY~~La~r~~~~ghvlDifa~~lDQvGi~EMk~l~ 351 (745)
T KOG1986|consen 272 RIVLFAGGPCTRGPGTVVSRELKEPIRSHHDIEKDNAPYYKKAIKFYEKLAERLANQGHVLDIFAAALDQVGILEMKPLV 351 (745)
T ss_pred eEEEeccCCCCcCCceecchhhcCCCcCcccccCcchHHHHHHHHHHHHHHHHHHhCCceEeeeeeeccccchHHHHHHh
Confidence 5788998877777654333332222100 00012223444677888888886655555554455677899999
Q ss_pred HHcCCeEEEcCCCChHHHHHHHHHHHH
Q 004256 734 RVAQGKYYYLPNASDAVISATTKDALS 760 (765)
Q Consensus 734 ~~~gG~y~~~~~~~~~~l~~~~~~~~~ 760 (765)
+.+||-.+.-++.+.+....-++....
T Consensus 352 ~~TGG~lvl~dsF~~s~Fk~sfqR~f~ 378 (745)
T KOG1986|consen 352 ESTGGVLVLGDSFNTSIFKQSFQRIFT 378 (745)
T ss_pred hcCCcEEEEecccchHHHHHHHHHHhc
Confidence 999999999998887666665555543
No 451
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.72 E-value=0.063 Score=53.95 Aligned_cols=24 Identities=42% Similarity=0.636 Sum_probs=22.1
Q ss_pred EEEECCCCcHHHHHHHHHHhhCCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
|.|.|++|+||||+|+.|+..+..
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 679999999999999999999874
No 452
>PRK02496 adk adenylate kinase; Provisional
Probab=92.71 E-value=0.082 Score=52.50 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=21.6
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.++|.|+||+||||+++.|+..+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 453
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.63 E-value=0.13 Score=55.50 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=24.5
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..+++||.|++|+||||++++|...++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999998875
No 454
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.63 E-value=0.093 Score=49.66 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.3
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
++|.||+|+|||++++.|.+..+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999999875
No 455
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.57 E-value=0.086 Score=53.54 Aligned_cols=25 Identities=36% Similarity=0.379 Sum_probs=22.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|.|.|++|+||||+++.|..+++
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3478999999999999999999876
No 456
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=92.52 E-value=0.093 Score=53.42 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.1
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|+|.|+||+||||+|+.|++.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999998654
No 457
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.52 E-value=0.11 Score=50.70 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=23.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.+|+|.|.+|+||||+.|.|++.+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN 27 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC
Confidence 5799999999999999999999874
No 458
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.52 E-value=0.092 Score=53.01 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=23.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..-++|.|++|+|||++++.|...++
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 34589999999999999999999876
No 459
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.51 E-value=0.088 Score=51.93 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.5
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
-++|.|++|+||||+++.|....+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 5899999999999999999997764
No 460
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.49 E-value=0.08 Score=51.16 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=21.9
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|+|.+|+||||+|++|.+.+.
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~ 27 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLF 27 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998874
No 461
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.48 E-value=0.4 Score=56.42 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=23.4
Q ss_pred cCCCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 113 DREIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 113 ~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
....|-|||+||+|+||||+..++.+.+.
T Consensus 313 ~~~~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 313 HKPQGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 33457799999999999999887776654
No 462
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.44 E-value=0.096 Score=52.87 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=22.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|-|+|.||+|+||||+++++...++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5689999999999999999887765
No 463
>PRK05541 adenylylsulfate kinase; Provisional
Probab=92.31 E-value=0.088 Score=51.89 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=22.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|+|.|.+|+||||+++.|...+.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999998775
No 464
>PRK13948 shikimate kinase; Provisional
Probab=92.28 E-value=0.18 Score=50.16 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.9
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
...+|+|.|.+|+||||+++.|++.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346799999999999999999998764
No 465
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.25 E-value=0.12 Score=50.98 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..+|+|.|++|+||||+++.|+..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35799999999999999999998865
No 466
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.18 E-value=0.11 Score=53.22 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=21.8
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|+||+||||+++.|+..+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998765
No 467
>KOG4465 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.14 E-value=0.75 Score=49.01 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=63.7
Q ss_pred ccCCceEEEEEeCCCCCCc---hhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhhcCCC
Q 004256 558 RKAGALVIFVVDASGSMAL---NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLPC 632 (765)
Q Consensus 558 ~~~~~~vv~vvD~SgSM~~---~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~--~~~~~~~~l~~l~~ 632 (765)
.-++..+++.||+|+||.. .-+-.++.++..+..-.+.....+-.|+|.+. -+-.|+|. ...++...+++++.
T Consensus 424 ~ptgkr~~laldvs~sm~~rv~~s~ln~reaaa~m~linlhnead~~~vaf~d~--lte~pftkd~kigqv~~~~nni~~ 501 (598)
T KOG4465|consen 424 EPTGKRFCLALDVSASMNQRVLGSILNAREAAAAMCLINLHNEADSRCVAFCDE--LTECPFTKDMKIGQVLDAMNNIDA 501 (598)
T ss_pred CCCCceEEEEEecchhhhhhhhccccchHHHHhhhheeeeccccceeEEEeccc--cccCCCcccccHHHHHHHHhcCCC
Confidence 3457889999999999962 11223344444433223566777888999887 34578886 46677888888887
Q ss_pred CCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCC
Q 004256 633 GGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANI 673 (765)
Q Consensus 633 gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~ 673 (765)
|| |+-+--+..|.+ ..-+. -+.|++||...-.
T Consensus 502 g~-tdcglpm~wa~e----nnlk~----dvfii~tdndt~a 533 (598)
T KOG4465|consen 502 GG-TDCGLPMIWAQE----NNLKA----DVFIIFTDNDTFA 533 (598)
T ss_pred CC-CccCCceeehhh----cCCCc----cEEEEEecCcccc
Confidence 64 443322222211 11111 2678899977543
No 468
>PRK14527 adenylate kinase; Provisional
Probab=92.11 E-value=0.11 Score=51.95 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-++|.|+||+||||+|+.|++.+.
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999987654
No 469
>PLN02200 adenylate kinase family protein
Probab=92.03 E-value=0.11 Score=53.83 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=21.7
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.|+||+||||+|+.|++.+.
T Consensus 45 ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 45 ITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 470
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.02 E-value=0.12 Score=51.15 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=22.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-++|.|++|+||||+++.|+.++.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4589999999999999999999875
No 471
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.99 E-value=0.52 Score=54.27 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..+-|||+||+|+||||+.+++...+.
T Consensus 241 ~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 345589999999999999997766554
No 472
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=91.96 E-value=0.15 Score=56.27 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCc
Q 004256 102 AIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPI 143 (765)
Q Consensus 102 ~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~ 143 (765)
.++..|.- ...+|||.|+||.||||+|.+++..+...
T Consensus 254 kl~eRL~e-----raeGILIAG~PGaGKsTFaqAlAefy~~~ 290 (604)
T COG1855 254 KLKERLEE-----RAEGILIAGAPGAGKSTFAQALAEFYASQ 290 (604)
T ss_pred HHHHHHHh-----hhcceEEecCCCCChhHHHHHHHHHHHhc
Confidence 35555543 23799999999999999999999987653
No 473
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=91.84 E-value=0.12 Score=55.70 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.6
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.|+|||||||+|+.|.+.++
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~ 27 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP 27 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC
Confidence 478899999999999999998874
No 474
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.83 E-value=0.095 Score=52.28 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=21.6
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|+++|.||+||||+|+-|++.+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999885
No 475
>PTZ00088 adenylate kinase 1; Provisional
Probab=91.81 E-value=0.12 Score=53.36 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.9
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|+||+||||+|+.|++.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999999764
No 476
>PRK14528 adenylate kinase; Provisional
Probab=91.77 E-value=0.13 Score=51.45 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.5
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|+||+||||+++.|++.+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987653
No 477
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=91.73 E-value=0.13 Score=49.22 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.1
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhh
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
...+|||.|++|+|||++|..+.+.
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4678999999999999999888775
No 478
>COG1084 Predicted GTPase [General function prediction only]
Probab=91.73 E-value=0.64 Score=49.77 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=28.0
Q ss_pred HhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 109 LGAIDREIGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 109 l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
+-.+.|....|+|.|.|.+|||+|++.|...-|.
T Consensus 161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpE 194 (346)
T COG1084 161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPE 194 (346)
T ss_pred CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCc
Confidence 3445666677999999999999999999987664
No 479
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=91.72 E-value=0.2 Score=53.68 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=24.1
Q ss_pred cCCCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 113 DREIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 113 ~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
......+-|+|.+++|||++++..+....
T Consensus 190 ~~~~~~~hl~G~Ss~GKTt~~~~a~Sv~G 218 (286)
T PF06048_consen 190 GVEGFGFHLYGQSSSGKTTALQLAASVWG 218 (286)
T ss_pred CCCceEEEEEeCCCCCHHHHHHHhhhhCc
Confidence 33456699999999999999999988754
No 480
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=91.70 E-value=0.51 Score=50.64 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=27.5
Q ss_pred eeechHHHHHH----HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhh
Q 004256 97 VVGQDAIKTAL----LLGAIDREIGGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 97 ivG~~~~~~aL----~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
+.|...-.+.+ .-.++-.....|+|.||.|+|||++.-..-..
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~ 72 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD 72 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh
Confidence 56655433333 22333334466999999999999987765443
No 481
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=91.69 E-value=0.14 Score=46.55 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=20.7
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|++.|++|+|||+|.+.+.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 379999999999999999997643
No 482
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.67 E-value=0.14 Score=49.81 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|.|.|++|+|||++|+.|++.+.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998764
No 483
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=91.61 E-value=0.14 Score=51.13 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=21.7
Q ss_pred EEEECCCCcHHHHHHHHHHhhCCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
|.|.|.+|+||||+|+.|+..++.
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~ 25 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPN 25 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 678999999999999999998753
No 484
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.61 E-value=0.13 Score=46.46 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=19.3
Q ss_pred CcEEEECCCCcHHHHHHHHHH
Q 004256 117 GGIAISGRRGTAKTVMARGLH 137 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~ 137 (765)
..++|.||+|+||||+++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 459999999999999999986
No 485
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.53 E-value=0.12 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.2
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|+|.|.||+||||+|+.|+..+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998764
No 486
>PRK06696 uridine kinase; Validated
Probab=91.50 E-value=0.12 Score=53.18 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=22.1
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|.|.|++|+||||+|+.|++.++
T Consensus 24 iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 24 RVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999999875
No 487
>PRK04182 cytidylate kinase; Provisional
Probab=91.48 E-value=0.15 Score=50.01 Aligned_cols=24 Identities=46% Similarity=0.462 Sum_probs=21.7
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.|.+|+||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999998765
No 488
>PRK00889 adenylylsulfate kinase; Provisional
Probab=91.35 E-value=0.13 Score=50.61 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=22.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-++|.|.+|+||||+|+.|+..+.
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3488999999999999999999874
No 489
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.21 E-value=0.14 Score=50.82 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=21.3
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|.|.|.+|+||||+|+.|...+.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999875
No 490
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.18 E-value=0.15 Score=52.60 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=24.1
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
+.-|-|.||+|||||||.|.|+.+...
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 455999999999999999999998764
No 491
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.12 E-value=0.15 Score=50.37 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=18.3
Q ss_pred EEEECCCCcHHHHHHHHHHhh
Q 004256 119 IAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
+||.|+||||||+++..+...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999877554
No 492
>PRK14526 adenylate kinase; Provisional
Probab=91.11 E-value=0.16 Score=51.74 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.4
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.++|.|+||+||||+++.|+..+.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~ 25 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELN 25 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999997654
No 493
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.06 E-value=0.14 Score=52.58 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.4
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+=|.||+||||||++|+|+.+...
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 355889999999999999999988654
No 494
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=90.97 E-value=0.18 Score=49.31 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.+++|.|.+|+|||++++.|+..+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999875
No 495
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.94 E-value=0.16 Score=51.31 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.4
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
..-|.|.||+|+||||+.|.|-.+-
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCc
Confidence 3458999999999999999997663
No 496
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.88 E-value=0.18 Score=54.68 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=23.5
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
...++||.|++|+||||++++|....
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999876
No 497
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=90.86 E-value=0.27 Score=45.55 Aligned_cols=28 Identities=36% Similarity=0.442 Sum_probs=23.9
Q ss_pred CCCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 114 ~~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
+...-|+|.|+=|+|||+++|.+++.+.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3445599999999999999999999885
No 498
>PLN02318 phosphoribulokinase/uridine kinase
Probab=90.72 E-value=3.1 Score=48.63 Aligned_cols=43 Identities=26% Similarity=0.292 Sum_probs=29.4
Q ss_pred echHHHHHHHHhhhcC-CCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 99 GQDAIKTALLLGAIDR-EIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 99 G~~~~~~aL~l~~~~~-~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|-=-+.+++.+..... ...-|.|.|++|+||||+++.|...++
T Consensus 47 g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 47 GFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred chhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence 4334566664433322 123388899999999999999998875
No 499
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=90.66 E-value=0.16 Score=52.12 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.8
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|-|.|++|+||||+|+.|...+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999874
No 500
>PRK04132 replication factor C small subunit; Provisional
Probab=90.64 E-value=0.14 Score=62.06 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=36.6
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHH
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVM 132 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~l 132 (765)
.+|-.|++|+||+.+++.|.-..-+....|++|.||||+||.+.
T Consensus 13 ~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 13 YRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence 56778999999999999986555556677899999999999754
Done!