Query 004256
Match_columns 765
No_of_seqs 725 out of 4941
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 19:19:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8p_A Magnesium-chelatase 38 100.0 5.9E-35 2E-39 318.7 20.7 312 89-409 18-329 (350)
2 1ny5_A Transcriptional regulat 100.0 7.2E-35 2.5E-39 322.8 20.5 277 21-359 80-369 (387)
3 3dzd_A Transcriptional regulat 100.0 7.4E-34 2.5E-38 312.4 13.1 269 21-360 80-361 (368)
4 1ojl_A Transcriptional regulat 100.0 1.9E-28 6.4E-33 262.6 13.7 217 96-357 3-232 (304)
5 2r44_A Uncharacterized protein 99.9 4.5E-26 1.5E-30 247.0 19.8 256 94-408 26-303 (331)
6 2bjv_A PSP operon transcriptio 99.9 1.7E-26 5.9E-31 242.3 15.7 220 92-356 3-236 (265)
7 3f8t_A Predicted ATPase involv 99.9 1.3E-26 4.4E-31 254.8 15.0 241 97-404 215-485 (506)
8 3nbx_X ATPase RAVA; AAA+ ATPas 99.9 2E-25 6.9E-30 253.0 15.6 258 96-408 23-291 (500)
9 3f9v_A Minichromosome maintena 99.9 3.6E-25 1.2E-29 257.4 14.7 259 95-402 295-587 (595)
10 3k1j_A LON protease, ATP-depen 99.9 1E-21 3.5E-26 229.7 13.1 287 89-401 35-374 (604)
11 2x31_A Magnesium-chelatase 60 99.8 3.2E-24 1.1E-28 213.2 -8.6 186 558-759 2-187 (189)
12 3ibs_A Conserved hypothetical 99.8 8.1E-20 2.8E-24 185.4 15.8 158 558-746 8-198 (218)
13 1ijb_A VON willebrand factor; 99.8 1.2E-18 4E-23 175.2 20.1 175 561-761 13-194 (202)
14 4fx5_A VON willebrand factor t 99.8 9.5E-19 3.2E-23 197.2 21.5 174 559-763 75-258 (464)
15 3n70_A Transport activator; si 99.8 4E-20 1.4E-24 175.9 8.6 136 96-301 2-145 (145)
16 1shu_X Anthrax toxin receptor 99.8 5.4E-19 1.8E-23 174.0 16.8 173 560-761 5-180 (182)
17 1q0p_A Complement factor B; VO 99.8 1.4E-18 4.6E-23 176.8 18.6 178 559-760 13-217 (223)
18 3hu3_A Transitional endoplasmi 99.8 6.8E-22 2.3E-26 224.3 -9.6 283 21-403 115-460 (489)
19 3n2n_F Anthrax toxin receptor 99.8 1.3E-18 4.5E-23 171.7 14.4 175 560-761 6-183 (185)
20 3pfi_A Holliday junction ATP-d 99.8 2.2E-18 7.6E-23 186.8 15.2 220 89-401 23-253 (338)
21 4hqo_A Sporozoite surface prot 99.8 6.9E-18 2.4E-22 177.1 18.3 175 559-761 16-205 (266)
22 1atz_A VON willebrand factor; 99.8 1.4E-17 4.9E-22 165.2 17.3 162 560-748 4-172 (189)
23 4b4t_W RPN10, 26S proteasome r 99.7 1.5E-17 5E-22 172.3 16.8 159 563-745 5-176 (268)
24 1mf7_A Integrin alpha M; cell 99.7 2E-18 7E-23 172.0 10.0 178 560-762 4-189 (194)
25 1n3y_A Integrin alpha-X; alpha 99.7 1.7E-18 5.9E-23 172.9 9.5 177 560-761 8-192 (198)
26 1v7p_C Integrin alpha-2; snake 99.7 1.6E-17 5.3E-22 166.6 16.2 174 561-762 6-195 (200)
27 2b2x_A Integrin alpha-1; compu 99.7 8E-18 2.8E-22 171.7 14.3 173 560-761 21-210 (223)
28 3co5_A Putative two-component 99.7 4.4E-19 1.5E-23 168.3 4.5 132 96-301 5-143 (143)
29 3hws_A ATP-dependent CLP prote 99.7 3.5E-19 1.2E-23 195.4 4.3 239 97-398 17-345 (363)
30 2x5n_A SPRPN10, 26S proteasome 99.7 2.5E-17 8.4E-22 163.9 16.3 161 562-747 3-174 (192)
31 1pt6_A Integrin alpha-1; cell 99.7 1.1E-17 3.6E-22 169.5 13.6 173 560-760 6-194 (213)
32 4hqf_A Thrombospondin-related 99.7 1.9E-17 6.6E-22 175.1 16.0 171 559-758 19-205 (281)
33 4fcw_A Chaperone protein CLPB; 99.7 5.9E-18 2E-22 181.0 11.6 218 96-380 18-276 (311)
34 2xgg_A Microneme protein 2; A/ 99.7 5E-17 1.7E-21 159.9 17.3 146 561-731 17-170 (178)
35 1um8_A ATP-dependent CLP prote 99.7 4.9E-18 1.7E-22 187.1 9.9 247 96-405 22-368 (376)
36 2odp_A Complement C2; C3/C5 co 99.7 5.9E-17 2E-21 185.7 18.5 178 559-759 7-210 (509)
37 1hqc_A RUVB; extended AAA-ATPa 99.7 1.9E-17 6.3E-22 178.2 12.9 218 89-401 6-237 (324)
38 1ofh_A ATP-dependent HSL prote 99.7 9E-18 3.1E-22 179.2 10.0 242 96-402 16-299 (310)
39 1rrk_A Complement factor B; BB 99.7 1E-16 3.5E-21 183.0 19.2 178 561-762 1-205 (497)
40 3zqk_A VON willebrand factor; 99.7 2.6E-16 8.9E-21 157.7 18.3 166 560-761 20-192 (199)
41 3pxi_A Negative regulator of g 99.7 5.3E-17 1.8E-21 194.9 14.4 204 95-354 491-718 (758)
42 3hrz_D Complement factor B; se 99.7 1.6E-16 5.4E-21 190.4 17.9 184 559-762 241-447 (741)
43 1qvr_A CLPB protein; coiled co 99.7 5.5E-17 1.9E-21 197.0 13.6 217 95-378 558-815 (854)
44 3vfd_A Spastin; ATPase, microt 99.7 7E-17 2.4E-21 178.8 12.8 218 89-401 109-364 (389)
45 3uk6_A RUVB-like 2; hexameric 99.7 3.2E-16 1.1E-20 171.6 17.9 144 225-406 190-334 (368)
46 4b4t_J 26S protease regulatory 99.7 1E-16 3.4E-21 175.3 11.5 215 92-404 145-391 (405)
47 1mjn_A Integrin alpha-L; rossm 99.7 5.4E-17 1.8E-21 159.8 7.7 167 561-760 2-177 (179)
48 1lv7_A FTSH; alpha/beta domain 99.7 1.6E-16 5.4E-21 165.5 11.7 218 89-405 6-255 (257)
49 3h4m_A Proteasome-activating n 99.7 1.5E-16 5.3E-21 168.0 10.5 223 89-406 11-262 (285)
50 4b4t_I 26S protease regulatory 99.7 5.4E-17 1.9E-21 177.8 7.1 217 91-405 178-426 (437)
51 4b4t_H 26S protease regulatory 99.7 1.6E-16 5.6E-21 175.6 10.3 218 90-405 204-453 (467)
52 2c9o_A RUVB-like 1; hexameric 99.7 8.5E-16 2.9E-20 173.6 16.3 131 226-404 297-439 (456)
53 3pvs_A Replication-associated 99.6 1.6E-16 5.3E-21 178.6 9.4 215 90-400 21-242 (447)
54 3syl_A Protein CBBX; photosynt 99.6 2E-16 7E-21 169.0 9.5 213 96-396 32-280 (309)
55 2qp9_X Vacuolar protein sortin 99.6 6.3E-16 2.1E-20 168.9 13.0 200 89-384 45-270 (355)
56 3d8b_A Fidgetin-like protein 1 99.6 6.9E-16 2.4E-20 168.8 11.1 220 89-403 78-335 (357)
57 2qz4_A Paraplegin; AAA+, SPG7, 99.6 2.7E-16 9.2E-21 163.7 7.4 218 92-406 3-253 (262)
58 3eie_A Vacuolar protein sortin 99.6 2.6E-16 9E-21 169.6 7.5 199 89-383 12-236 (322)
59 4b4t_K 26S protease regulatory 99.6 7.6E-16 2.6E-20 170.6 11.2 219 92-407 169-419 (428)
60 4b4t_L 26S protease subunit RP 99.6 1E-15 3.5E-20 169.8 11.8 217 91-405 177-425 (437)
61 4b4t_M 26S protease regulatory 99.6 4.8E-16 1.6E-20 172.4 8.8 217 90-404 176-424 (434)
62 2r62_A Cell division protease 99.6 7E-17 2.4E-21 169.1 1.8 222 90-408 6-259 (268)
63 3b9p_A CG5977-PA, isoform A; A 99.6 2.1E-15 7.2E-20 160.3 13.2 221 89-400 15-270 (297)
64 2ce7_A Cell division protein F 99.6 1.5E-15 5.1E-20 171.0 8.9 217 90-404 11-258 (476)
65 1r6b_X CLPA protein; AAA+, N-t 99.6 5.3E-15 1.8E-19 177.6 13.2 221 95-380 458-713 (758)
66 1xwi_A SKD1 protein; VPS4B, AA 99.6 1.7E-14 5.8E-19 155.4 14.5 157 90-309 7-189 (322)
67 2zan_A Vacuolar protein sortin 99.5 1.8E-14 6.1E-19 162.1 13.4 200 89-383 128-353 (444)
68 3cf0_A Transitional endoplasmi 99.5 5.5E-15 1.9E-19 157.7 8.4 155 90-309 10-196 (301)
69 2dhr_A FTSH; AAA+ protein, hex 99.5 5.4E-15 1.8E-19 167.4 8.0 217 90-405 26-274 (499)
70 3m6a_A ATP-dependent protease 99.5 1.1E-14 3.7E-19 167.8 9.3 236 95-400 81-339 (543)
71 3bos_A Putative DNA replicatio 99.5 2.7E-13 9.2E-18 138.4 16.0 207 92-400 25-241 (242)
72 1sxj_D Activator 1 41 kDa subu 99.5 1.7E-13 5.8E-18 148.8 14.8 225 89-400 31-261 (353)
73 3pxg_A Negative regulator of g 99.5 8.9E-14 3.1E-18 157.4 12.7 221 91-399 176-403 (468)
74 2chg_A Replication factor C sm 99.5 3.2E-13 1.1E-17 135.5 14.6 211 90-400 12-224 (226)
75 3u61_B DNA polymerase accessor 99.5 1.4E-13 4.9E-18 148.1 12.0 211 89-399 20-234 (324)
76 3k6s_A Integrin alpha-X; cell 99.5 3.4E-14 1.2E-18 175.1 7.9 164 560-746 129-300 (1095)
77 1in4_A RUVB, holliday junction 99.5 9.7E-13 3.3E-17 142.4 18.1 219 91-402 21-250 (334)
78 1g41_A Heat shock protein HSLU 99.4 9.3E-13 3.2E-17 146.3 17.3 154 224-400 250-431 (444)
79 1ixz_A ATP-dependent metallopr 99.4 5.1E-14 1.8E-18 146.2 5.3 211 90-399 11-253 (254)
80 1jey_B KU80; double-strand DNA 99.4 1.1E-12 3.7E-17 151.8 15.7 161 562-745 8-229 (565)
81 2v1u_A Cell division control p 99.4 4E-13 1.4E-17 147.3 11.1 245 92-402 16-276 (387)
82 1iy2_A ATP-dependent metallopr 99.4 1.2E-13 4.1E-18 145.5 5.2 211 90-399 35-277 (278)
83 1njg_A DNA polymerase III subu 99.4 3.2E-12 1.1E-16 129.8 15.5 231 90-400 18-249 (250)
84 1fnn_A CDC6P, cell division co 99.4 3E-12 1E-16 140.6 15.5 245 92-404 14-276 (389)
85 1iqp_A RFCS; clamp loader, ext 99.4 1.1E-12 3.6E-17 140.7 11.5 210 89-398 19-230 (327)
86 3pxi_A Negative regulator of g 99.4 1.6E-12 5.4E-17 156.0 13.2 209 91-387 176-390 (758)
87 1l8q_A Chromosomal replication 99.4 3.8E-13 1.3E-17 144.8 6.8 217 90-401 6-239 (324)
88 2z4s_A Chromosomal replication 99.4 8E-13 2.7E-17 148.4 9.2 219 90-401 100-331 (440)
89 1yvr_A RO autoantigen, 60-kDa 99.3 2.9E-12 9.9E-17 147.4 12.8 104 559-674 366-475 (538)
90 3cf2_A TER ATPase, transitiona 99.3 2.2E-13 7.4E-18 161.4 3.2 154 91-309 473-658 (806)
91 1r6b_X CLPA protein; AAA+, N-t 99.3 3.5E-12 1.2E-16 153.1 13.5 229 92-402 183-433 (758)
92 1jr3_A DNA polymerase III subu 99.3 2.3E-11 7.8E-16 133.0 16.7 229 89-399 10-241 (373)
93 2chq_A Replication factor C sm 99.3 3.4E-12 1.2E-16 136.2 9.8 211 89-399 11-223 (319)
94 3rag_A Uncharacterized protein 99.3 3E-12 1E-16 129.4 8.4 94 558-653 131-229 (242)
95 2qby_B CDC6 homolog 3, cell di 99.3 1.7E-12 5.7E-17 142.6 7.1 132 227-403 136-271 (384)
96 1d2n_A N-ethylmaleimide-sensit 99.3 1.3E-12 4.4E-17 137.0 3.4 152 94-310 32-207 (272)
97 2nvo_A RO sixty-related protei 99.3 1.6E-11 5.3E-16 140.8 12.3 152 559-741 360-535 (535)
98 2qby_A CDC6 homolog 1, cell di 99.2 3.3E-11 1.1E-15 131.8 13.3 242 92-403 17-273 (386)
99 3cf2_A TER ATPase, transitiona 99.2 1.5E-12 5.1E-17 154.3 2.7 154 91-309 200-382 (806)
100 1sxj_A Activator 1 95 kDa subu 99.2 5.1E-11 1.8E-15 136.5 14.5 223 89-403 33-275 (516)
101 2x8a_A Nuclear valosin-contain 99.2 1.4E-11 4.6E-16 129.6 8.6 156 90-310 5-189 (274)
102 1sxj_B Activator 1 37 kDa subu 99.2 5.9E-11 2E-15 126.8 13.1 213 89-400 15-229 (323)
103 3t15_A Ribulose bisphosphate c 99.2 3.9E-12 1.3E-16 135.1 3.7 138 116-309 36-195 (293)
104 2ww8_A RRGA, cell WALL surface 99.2 2.8E-11 9.6E-16 145.2 11.1 115 558-675 221-394 (893)
105 1qvr_A CLPB protein; coiled co 99.2 1.3E-11 4.6E-16 149.7 7.4 212 91-386 166-396 (854)
106 1sxj_C Activator 1 40 kDa subu 99.2 5E-11 1.7E-15 129.2 9.2 213 89-399 19-236 (340)
107 2p65_A Hypothetical protein PF 99.1 6.9E-12 2.4E-16 122.4 0.9 152 92-298 19-186 (187)
108 1jbk_A CLPB protein; beta barr 99.1 6.4E-12 2.2E-16 122.9 -0.0 160 92-307 19-193 (195)
109 1sxj_E Activator 1 40 kDa subu 99.1 7.3E-10 2.5E-14 120.3 16.0 222 88-380 7-242 (354)
110 3te6_A Regulatory protein SIR3 99.1 7.7E-11 2.6E-15 125.7 6.0 161 226-403 134-316 (318)
111 1jey_A KU70; double-strand DNA 99.0 4E-09 1.4E-13 122.8 15.2 142 562-722 36-208 (609)
112 1ypw_A Transitional endoplasmi 99.0 3.3E-11 1.1E-15 144.9 -3.2 155 90-309 472-658 (806)
113 1ypw_A Transitional endoplasmi 98.9 7.6E-10 2.6E-14 133.0 5.5 155 90-309 199-382 (806)
114 2iue_A Pactolus I-domain; memb 98.8 1.1E-07 3.7E-12 94.8 17.0 195 561-761 3-211 (212)
115 1w5s_A Origin recognition comp 98.6 3.9E-08 1.3E-12 108.6 8.9 141 226-403 140-294 (412)
116 4akg_A Glutathione S-transfera 98.6 4.6E-08 1.6E-12 128.8 9.3 84 225-311 1337-1430(2695)
117 1a5t_A Delta prime, HOLB; zinc 98.5 5.1E-07 1.7E-11 97.3 13.6 67 224-306 108-174 (334)
118 2gno_A DNA polymerase III, gam 98.5 6E-07 2E-11 95.5 12.3 147 99-307 1-147 (305)
119 2nut_A Protein transport prote 98.5 3.9E-06 1.3E-10 99.8 19.4 191 559-758 130-393 (769)
120 4akg_A Glutathione S-transfera 98.4 2E-06 6.8E-11 113.5 17.4 136 115-310 644-791 (2695)
121 3vkg_A Dynein heavy chain, cyt 98.4 3.7E-06 1.3E-10 111.6 17.6 146 115-309 1303-1466(3245)
122 2kjq_A DNAA-related protein; s 98.3 1.7E-06 5.7E-11 82.0 8.7 61 225-296 84-146 (149)
123 3ec2_A DNA replication protein 98.3 1.6E-07 5.5E-12 91.6 1.7 51 90-140 5-62 (180)
124 2w58_A DNAI, primosome compone 98.3 5E-08 1.7E-12 97.0 -2.8 51 91-141 21-79 (202)
125 3rag_A Uncharacterized protein 98.1 5.7E-06 2E-10 83.6 8.9 62 661-745 11-76 (242)
126 3fcs_B Integrin beta-3; beta p 98.1 1.7E-05 5.8E-10 92.6 13.9 200 559-764 109-353 (690)
127 1m2o_A SEC23, protein transpor 98.0 0.00017 5.8E-09 85.8 21.0 191 559-759 119-388 (768)
128 1pcx_A Protein transport prote 98.0 5.3E-05 1.8E-09 90.6 15.9 179 559-748 185-415 (810)
129 3vi3_B Integrin beta-1; beta p 98.0 0.0002 6.7E-09 78.5 18.8 199 558-764 119-360 (454)
130 3t3p_B Integrin beta-3; integr 98.0 4.8E-05 1.6E-09 83.9 13.3 202 558-764 108-353 (472)
131 3v4v_B Integrin beta-7; cell a 97.9 5.5E-05 1.9E-09 83.8 13.0 200 558-764 129-372 (503)
132 3k6s_B Integrin beta-2; cell r 97.9 9.6E-06 3.3E-10 94.4 6.7 199 558-763 101-342 (687)
133 3vkg_A Dynein heavy chain, cyt 97.9 6.2E-05 2.1E-09 100.2 14.2 136 116-309 604-750 (3245)
134 2qgz_A Helicase loader, putati 97.9 1.3E-06 4.6E-11 92.9 -1.4 51 91-141 120-177 (308)
135 1m2v_B SEC24, protein transpor 97.7 0.0002 7E-09 86.2 14.4 179 559-748 301-531 (926)
136 1tue_A Replication protein E1; 97.6 9.2E-05 3.1E-09 73.2 6.6 28 114-141 56-83 (212)
137 3efo_B SEC24 related gene fami 97.5 0.0024 8.2E-08 75.8 19.0 184 558-749 174-405 (770)
138 3eh1_A Protein transport prote 97.5 0.0017 5.9E-08 76.8 17.5 176 559-747 158-378 (751)
139 3eh2_A Protein transport prote 97.5 0.0021 7.2E-08 76.3 17.9 184 559-750 171-402 (766)
140 1u0j_A DNA replication protein 97.3 0.00032 1.1E-08 72.4 6.6 26 116-141 104-129 (267)
141 2orw_A Thymidine kinase; TMTK, 97.2 0.00034 1.2E-08 68.4 5.8 28 225-252 77-104 (184)
142 2r2a_A Uncharacterized protein 97.2 0.00081 2.8E-08 66.6 8.6 60 225-297 88-152 (199)
143 2fna_A Conserved hypothetical 97.0 0.00051 1.7E-08 73.4 5.4 43 95-141 13-55 (357)
144 1jr3_D DNA polymerase III, del 96.9 0.0023 7.9E-08 68.6 9.5 126 225-401 77-208 (343)
145 3upu_A ATP-dependent DNA helic 96.9 0.00042 1.4E-08 77.7 3.6 53 88-141 17-70 (459)
146 3e1s_A Exodeoxyribonuclease V, 96.7 0.0023 7.9E-08 73.7 7.5 26 116-141 204-229 (574)
147 1w36_D RECD, exodeoxyribonucle 95.7 0.014 4.9E-07 67.6 7.7 25 116-140 164-188 (608)
148 2b8t_A Thymidine kinase; deoxy 95.7 0.014 4.8E-07 58.6 6.5 26 226-251 91-116 (223)
149 3jvv_A Twitching mobility prot 95.1 0.019 6.5E-07 61.9 5.7 26 116-141 123-148 (356)
150 1qhx_A CPT, protein (chloramph 95.0 0.011 3.8E-07 56.4 3.2 25 117-141 4-28 (178)
151 1kag_A SKI, shikimate kinase I 94.7 0.015 5.1E-07 55.3 3.2 25 117-141 5-29 (173)
152 3kb2_A SPBC2 prophage-derived 94.4 0.015 5.3E-07 54.9 2.4 24 118-141 3-26 (173)
153 1ly1_A Polynucleotide kinase; 94.0 0.025 8.5E-07 53.8 2.9 21 118-138 4-24 (181)
154 1via_A Shikimate kinase; struc 94.0 0.022 7.4E-07 54.4 2.5 24 118-141 6-29 (175)
155 2qen_A Walker-type ATPase; unk 93.8 0.046 1.6E-06 57.8 5.0 44 95-140 12-55 (350)
156 3trf_A Shikimate kinase, SK; a 93.8 0.024 8.4E-07 54.4 2.5 25 117-141 6-30 (185)
157 2fz4_A DNA repair protein RAD2 93.7 0.12 4E-06 52.2 7.6 24 117-140 109-132 (237)
158 3lw7_A Adenylate kinase relate 93.6 0.033 1.1E-06 52.4 3.0 23 118-141 3-25 (179)
159 3vaa_A Shikimate kinase, SK; s 93.6 0.029 1E-06 54.9 2.7 26 116-141 25-50 (199)
160 3cmw_A Protein RECA, recombina 93.6 0.042 1.4E-06 70.0 4.7 22 119-140 1085-1106(1706)
161 3iij_A Coilin-interacting nucl 93.5 0.034 1.2E-06 53.2 2.9 25 117-141 12-36 (180)
162 3t61_A Gluconokinase; PSI-biol 93.5 0.029 1E-06 54.9 2.4 25 117-141 19-43 (202)
163 2iyv_A Shikimate kinase, SK; t 93.5 0.03 1E-06 53.8 2.5 24 118-141 4-27 (184)
164 1kgd_A CASK, peripheral plasma 93.4 0.039 1.3E-06 53.1 3.2 25 117-141 6-30 (180)
165 1zuh_A Shikimate kinase; alpha 93.4 0.032 1.1E-06 52.8 2.5 25 117-141 8-32 (168)
166 1e6c_A Shikimate kinase; phosp 93.3 0.033 1.1E-06 52.7 2.5 24 118-141 4-27 (173)
167 3dl0_A Adenylate kinase; phosp 93.3 0.039 1.3E-06 54.6 3.1 24 118-141 2-25 (216)
168 1zp6_A Hypothetical protein AT 93.3 0.03 1E-06 54.0 2.2 23 117-139 10-32 (191)
169 1xx6_A Thymidine kinase; NESG, 93.3 0.089 3E-06 51.4 5.6 27 226-252 83-109 (191)
170 1kht_A Adenylate kinase; phosp 93.3 0.031 1.1E-06 53.7 2.3 25 117-141 4-28 (192)
171 3tr0_A Guanylate kinase, GMP k 93.3 0.04 1.4E-06 53.8 3.1 25 117-141 8-32 (205)
172 3uie_A Adenylyl-sulfate kinase 93.3 0.031 1.1E-06 54.7 2.3 26 116-141 25-50 (200)
173 2vli_A Antibiotic resistance p 93.3 0.033 1.1E-06 53.3 2.4 25 117-141 6-30 (183)
174 1y63_A LMAJ004144AAA protein; 93.2 0.046 1.6E-06 52.7 3.4 23 117-139 11-33 (184)
175 1ex7_A Guanylate kinase; subst 93.2 0.05 1.7E-06 52.9 3.6 25 117-141 2-26 (186)
176 1nks_A Adenylate kinase; therm 93.2 0.03 1E-06 53.8 2.0 24 118-141 3-26 (194)
177 2ze6_A Isopentenyl transferase 93.1 0.036 1.2E-06 56.7 2.5 24 118-141 3-26 (253)
178 4eun_A Thermoresistant glucoki 93.1 0.035 1.2E-06 54.4 2.3 26 116-141 29-54 (200)
179 2rhm_A Putative kinase; P-loop 93.1 0.033 1.1E-06 53.7 2.1 25 117-141 6-30 (193)
180 2qor_A Guanylate kinase; phosp 93.1 0.047 1.6E-06 53.6 3.2 25 117-141 13-37 (204)
181 3cm0_A Adenylate kinase; ATP-b 93.0 0.038 1.3E-06 53.0 2.5 24 118-141 6-29 (186)
182 1tev_A UMP-CMP kinase; ploop, 93.0 0.04 1.4E-06 53.1 2.5 24 118-141 5-28 (196)
183 1ye8_A Protein THEP1, hypothet 93.0 0.047 1.6E-06 52.7 3.0 24 118-141 2-25 (178)
184 1knq_A Gluconate kinase; ALFA/ 93.0 0.045 1.6E-06 52.0 2.9 25 117-141 9-33 (175)
185 3fb4_A Adenylate kinase; psych 92.9 0.04 1.4E-06 54.4 2.5 24 118-141 2-25 (216)
186 2plr_A DTMP kinase, probable t 92.9 0.042 1.4E-06 53.8 2.5 24 118-141 6-29 (213)
187 2cdn_A Adenylate kinase; phosp 92.8 0.043 1.5E-06 53.6 2.5 24 118-141 22-45 (201)
188 2pt5_A Shikimate kinase, SK; a 92.8 0.044 1.5E-06 51.6 2.5 24 118-141 2-25 (168)
189 3tau_A Guanylate kinase, GMP k 92.6 0.065 2.2E-06 52.8 3.5 26 116-141 8-33 (208)
190 2jaq_A Deoxyguanosine kinase; 92.6 0.047 1.6E-06 53.0 2.5 24 118-141 2-25 (205)
191 2j41_A Guanylate kinase; GMP, 92.6 0.053 1.8E-06 52.9 2.8 24 117-140 7-30 (207)
192 2bwj_A Adenylate kinase 5; pho 92.5 0.044 1.5E-06 53.1 2.1 25 117-141 13-37 (199)
193 2c95_A Adenylate kinase 1; tra 92.5 0.045 1.5E-06 52.9 2.2 25 117-141 10-34 (196)
194 3tqf_A HPR(Ser) kinase; transf 92.4 0.067 2.3E-06 51.2 3.1 27 113-139 13-39 (181)
195 3a00_A Guanylate kinase, GMP k 92.4 0.059 2E-06 52.1 2.8 24 118-141 3-26 (186)
196 1cke_A CK, MSSA, protein (cyti 92.4 0.052 1.8E-06 53.9 2.5 25 117-141 6-30 (227)
197 1qf9_A UMP/CMP kinase, protein 92.4 0.047 1.6E-06 52.4 2.1 24 118-141 8-31 (194)
198 3e2i_A Thymidine kinase; Zn-bi 92.3 0.36 1.2E-05 47.9 8.4 27 226-252 103-129 (219)
199 1zd8_A GTP:AMP phosphotransfer 92.3 0.058 2E-06 53.8 2.8 25 117-141 8-32 (227)
200 1aky_A Adenylate kinase; ATP:A 92.3 0.055 1.9E-06 53.7 2.5 25 117-141 5-29 (220)
201 1gvn_B Zeta; postsegregational 92.3 0.055 1.9E-06 56.4 2.6 24 118-141 35-58 (287)
202 1ukz_A Uridylate kinase; trans 92.3 0.068 2.3E-06 52.1 3.1 24 118-141 17-40 (203)
203 2p5t_B PEZT; postsegregational 92.1 0.053 1.8E-06 55.3 2.3 24 118-141 34-57 (253)
204 2bdt_A BH3686; alpha-beta prot 92.1 0.067 2.3E-06 51.6 2.8 23 118-140 4-26 (189)
205 1uj2_A Uridine-cytidine kinase 92.0 0.076 2.6E-06 54.0 3.3 24 118-141 24-47 (252)
206 3c8u_A Fructokinase; YP_612366 92.0 0.051 1.7E-06 53.5 1.8 26 116-141 22-47 (208)
207 2v54_A DTMP kinase, thymidylat 91.9 0.076 2.6E-06 51.6 3.0 25 117-141 5-29 (204)
208 2z0h_A DTMP kinase, thymidylat 91.9 0.063 2.2E-06 51.9 2.3 22 119-140 3-24 (197)
209 2j9r_A Thymidine kinase; TK1, 91.8 0.26 8.8E-06 48.9 6.7 27 226-252 103-129 (214)
210 1zak_A Adenylate kinase; ATP:A 91.8 0.068 2.3E-06 53.1 2.6 25 117-141 6-30 (222)
211 1znw_A Guanylate kinase, GMP k 91.7 0.085 2.9E-06 51.9 3.1 25 117-141 21-45 (207)
212 2bbw_A Adenylate kinase 4, AK4 91.7 0.069 2.4E-06 54.0 2.5 24 117-140 28-51 (246)
213 2yvu_A Probable adenylyl-sulfa 91.7 0.073 2.5E-06 51.2 2.6 25 117-141 14-38 (186)
214 1lvg_A Guanylate kinase, GMP k 91.7 0.075 2.6E-06 52.0 2.7 26 116-141 4-29 (198)
215 3tlx_A Adenylate kinase 2; str 91.7 0.071 2.4E-06 54.0 2.5 25 117-141 30-54 (243)
216 2wwf_A Thymidilate kinase, put 91.6 0.061 2.1E-06 52.7 2.0 25 117-141 11-35 (212)
217 3be4_A Adenylate kinase; malar 91.6 0.071 2.4E-06 52.9 2.4 25 117-141 6-30 (217)
218 1ak2_A Adenylate kinase isoenz 91.6 0.074 2.5E-06 53.4 2.5 25 117-141 17-41 (233)
219 1s96_A Guanylate kinase, GMP k 91.5 0.1 3.6E-06 52.0 3.5 26 116-141 16-41 (219)
220 2pbr_A DTMP kinase, thymidylat 91.5 0.085 2.9E-06 50.7 2.8 23 118-140 2-24 (195)
221 1z6t_A APAF-1, apoptotic prote 91.4 0.15 5E-06 58.6 5.2 46 93-138 122-169 (591)
222 2xb4_A Adenylate kinase; ATP-b 91.4 0.077 2.6E-06 52.9 2.5 24 118-141 2-25 (223)
223 1htw_A HI0065; nucleotide-bind 91.4 0.1 3.6E-06 49.2 3.2 26 116-141 33-58 (158)
224 2qmh_A HPR kinase/phosphorylas 91.3 0.074 2.5E-06 52.2 2.1 28 114-141 32-59 (205)
225 2qt1_A Nicotinamide riboside k 91.3 0.084 2.9E-06 51.7 2.6 24 118-141 23-46 (207)
226 3sr0_A Adenylate kinase; phosp 91.3 0.082 2.8E-06 52.3 2.5 23 119-141 3-25 (206)
227 2if2_A Dephospho-COA kinase; a 91.3 0.083 2.8E-06 51.5 2.5 21 118-138 3-23 (204)
228 1e4v_A Adenylate kinase; trans 91.3 0.073 2.5E-06 52.6 2.1 24 118-141 2-25 (214)
229 1z6g_A Guanylate kinase; struc 91.3 0.11 3.9E-06 51.5 3.6 26 116-141 23-48 (218)
230 3ney_A 55 kDa erythrocyte memb 91.3 0.12 4.2E-06 50.7 3.6 26 116-141 19-44 (197)
231 3asz_A Uridine kinase; cytidin 91.3 0.066 2.3E-06 52.6 1.8 25 117-141 7-31 (211)
232 1nn5_A Similar to deoxythymidy 91.2 0.072 2.5E-06 52.3 2.0 25 117-141 10-34 (215)
233 1jjv_A Dephospho-COA kinase; P 91.2 0.09 3.1E-06 51.4 2.6 21 118-138 4-24 (206)
234 2pez_A Bifunctional 3'-phospho 91.2 0.085 2.9E-06 50.4 2.4 24 117-140 6-29 (179)
235 4gp7_A Metallophosphoesterase; 91.1 0.091 3.1E-06 50.1 2.5 20 117-136 10-29 (171)
236 3ake_A Cytidylate kinase; CMP 91.1 0.088 3E-06 51.3 2.5 24 118-141 4-27 (208)
237 3umf_A Adenylate kinase; rossm 91.0 0.091 3.1E-06 52.4 2.5 24 118-141 31-54 (217)
238 3a4m_A L-seryl-tRNA(SEC) kinas 91.0 0.1 3.5E-06 53.4 2.9 23 118-140 6-28 (260)
239 4e22_A Cytidylate kinase; P-lo 90.8 0.12 4.1E-06 52.7 3.2 26 116-141 27-52 (252)
240 3crm_A TRNA delta(2)-isopenten 90.5 0.13 4.4E-06 54.5 3.2 25 117-141 6-30 (323)
241 3kta_A Chromosome segregation 90.4 0.13 4.3E-06 49.2 2.8 26 116-141 26-51 (182)
242 1m7g_A Adenylylsulfate kinase; 90.4 0.11 3.7E-06 51.3 2.3 26 116-141 25-50 (211)
243 1uf9_A TT1252 protein; P-loop, 90.3 0.12 4E-06 50.2 2.5 23 117-139 9-31 (203)
244 3r20_A Cytidylate kinase; stru 90.3 0.12 4E-06 52.2 2.5 25 117-141 10-34 (233)
245 1svm_A Large T antigen; AAA+ f 90.1 0.15 5E-06 55.3 3.3 26 115-140 168-193 (377)
246 4a74_A DNA repair and recombin 90.1 0.13 4.4E-06 50.9 2.7 25 117-141 26-50 (231)
247 3nwj_A ATSK2; P loop, shikimat 90.1 0.13 4.6E-06 52.4 2.8 26 116-141 48-73 (250)
248 2vhj_A Ntpase P4, P4; non- hyd 90.1 0.11 3.9E-06 54.7 2.3 23 117-139 124-146 (331)
249 3lnc_A Guanylate kinase, GMP k 89.9 0.11 3.7E-06 52.0 1.9 25 117-141 28-53 (231)
250 2ehv_A Hypothetical protein PH 89.9 0.14 4.8E-06 51.4 2.8 23 116-138 30-52 (251)
251 2ga8_A Hypothetical 39.9 kDa p 89.8 0.22 7.4E-06 53.4 4.3 25 117-141 25-49 (359)
252 1ltq_A Polynucleotide kinase; 89.8 0.14 5E-06 53.2 2.9 23 118-140 4-26 (301)
253 3tif_A Uncharacterized ABC tra 89.7 0.16 5.4E-06 51.3 3.0 27 116-142 31-57 (235)
254 3a8t_A Adenylate isopentenyltr 89.6 0.16 5.3E-06 54.1 3.0 24 118-141 42-65 (339)
255 2iut_A DNA translocase FTSK; n 89.6 0.8 2.7E-05 52.0 9.0 59 227-297 346-409 (574)
256 2w0m_A SSO2452; RECA, SSPF, un 89.6 0.17 5.7E-06 50.0 3.1 24 117-140 24-47 (235)
257 2eyu_A Twitching motility prot 89.6 0.17 5.7E-06 52.0 3.1 27 115-141 24-50 (261)
258 2v9p_A Replication protein E1; 89.6 0.18 6.1E-06 53.0 3.4 26 115-140 125-150 (305)
259 1gtv_A TMK, thymidylate kinase 89.5 0.072 2.5E-06 52.3 0.3 23 119-141 3-25 (214)
260 1rz3_A Hypothetical protein rb 89.5 0.21 7.3E-06 48.7 3.7 24 118-141 24-47 (201)
261 2onk_A Molybdate/tungstate ABC 89.5 0.17 5.9E-06 51.2 3.1 26 117-142 25-50 (240)
262 2jeo_A Uridine-cytidine kinase 89.3 0.14 4.9E-06 51.7 2.3 24 118-141 27-50 (245)
263 2pcj_A ABC transporter, lipopr 89.2 0.14 4.7E-06 51.3 2.1 26 117-142 31-56 (224)
264 2grj_A Dephospho-COA kinase; T 89.2 0.18 6.3E-06 49.1 2.9 22 119-140 15-36 (192)
265 1p9r_A General secretion pathw 89.1 0.24 8.1E-06 54.5 4.0 29 114-142 165-193 (418)
266 3d3q_A TRNA delta(2)-isopenten 89.1 0.19 6.5E-06 53.5 3.2 24 118-141 9-32 (340)
267 1sgw_A Putative ABC transporte 89.0 0.17 5.9E-06 50.3 2.6 27 116-142 35-61 (214)
268 1vht_A Dephospho-COA kinase; s 88.9 0.19 6.4E-06 49.6 2.8 21 118-138 6-26 (218)
269 2cvh_A DNA repair and recombin 88.9 0.22 7.6E-06 48.8 3.3 22 117-138 21-42 (220)
270 3aez_A Pantothenate kinase; tr 88.8 0.16 5.5E-06 53.6 2.3 24 118-141 92-115 (312)
271 3exa_A TRNA delta(2)-isopenten 88.7 0.21 7.2E-06 52.5 3.1 24 118-141 5-28 (322)
272 3foz_A TRNA delta(2)-isopenten 88.7 0.22 7.4E-06 52.3 3.2 24 118-141 12-35 (316)
273 3gfo_A Cobalt import ATP-bindi 88.5 0.19 6.3E-06 52.1 2.6 27 116-142 34-60 (275)
274 1g6h_A High-affinity branched- 88.5 0.18 6.3E-06 51.5 2.5 27 116-142 33-59 (257)
275 4eaq_A DTMP kinase, thymidylat 88.5 0.18 6.3E-06 50.5 2.5 25 117-141 27-51 (229)
276 1b0u_A Histidine permease; ABC 88.4 0.22 7.5E-06 51.1 3.0 27 116-142 32-58 (262)
277 2ff7_A Alpha-hemolysin translo 88.4 0.19 6.5E-06 51.1 2.5 27 116-142 35-61 (247)
278 1n0w_A DNA repair protein RAD5 88.4 0.22 7.5E-06 49.7 3.0 24 116-139 24-47 (243)
279 2cbz_A Multidrug resistance-as 88.3 0.18 6.2E-06 50.9 2.3 27 116-142 31-57 (237)
280 2i3b_A HCR-ntpase, human cance 88.3 0.23 7.8E-06 48.3 2.9 24 118-141 3-26 (189)
281 3b0c_W CENP-W, centromere prot 88.3 0.67 2.3E-05 37.9 5.3 55 344-405 19-73 (76)
282 1ji0_A ABC transporter; ATP bi 88.2 0.2 6.8E-06 50.7 2.5 27 116-142 32-58 (240)
283 1lw7_A Transcriptional regulat 88.2 0.27 9.2E-06 52.9 3.7 27 116-142 170-196 (365)
284 1mv5_A LMRA, multidrug resista 88.1 0.21 7.1E-06 50.6 2.6 27 116-142 28-54 (243)
285 4g1u_C Hemin import ATP-bindin 88.0 0.2 6.7E-06 51.6 2.4 27 116-142 37-63 (266)
286 1odf_A YGR205W, hypothetical 3 88.0 0.2 6.7E-06 52.3 2.4 24 118-141 33-56 (290)
287 2gza_A Type IV secretion syste 88.0 0.2 7E-06 53.9 2.5 28 115-142 174-201 (361)
288 2pze_A Cystic fibrosis transme 87.9 0.23 7.9E-06 49.8 2.7 27 116-142 34-60 (229)
289 2olj_A Amino acid ABC transpor 87.9 0.25 8.5E-06 50.7 3.0 27 116-142 50-76 (263)
290 2ixe_A Antigen peptide transpo 87.8 0.25 8.5E-06 51.0 3.0 27 116-142 45-71 (271)
291 2ghi_A Transport protein; mult 87.8 0.24 8.2E-06 50.8 2.8 27 116-142 46-72 (260)
292 3tqc_A Pantothenate kinase; bi 87.8 0.22 7.4E-06 52.8 2.5 23 119-141 95-117 (321)
293 2ihy_A ABC transporter, ATP-bi 87.8 0.22 7.6E-06 51.6 2.6 27 116-142 47-73 (279)
294 2qi9_C Vitamin B12 import ATP- 87.7 0.23 7.8E-06 50.6 2.6 27 116-142 26-52 (249)
295 2h92_A Cytidylate kinase; ross 87.7 0.28 9.7E-06 48.2 3.2 24 118-141 5-28 (219)
296 2f1r_A Molybdopterin-guanine d 87.6 0.21 7.1E-06 47.8 2.1 25 117-141 3-27 (171)
297 3b85_A Phosphate starvation-in 87.6 0.19 6.6E-06 49.6 1.9 24 116-139 22-45 (208)
298 4b3f_X DNA-binding protein smu 87.6 0.35 1.2E-05 56.3 4.4 37 101-139 192-229 (646)
299 1vpl_A ABC transporter, ATP-bi 87.5 0.27 9.2E-06 50.3 3.0 27 116-142 41-67 (256)
300 2yz2_A Putative ABC transporte 87.4 0.27 9.2E-06 50.5 3.0 27 116-142 33-59 (266)
301 1taf_A TFIID TBP associated fa 87.4 1.3 4.4E-05 35.3 6.2 49 347-402 18-66 (68)
302 1sq5_A Pantothenate kinase; P- 87.3 0.21 7.2E-06 52.5 2.1 24 118-141 82-105 (308)
303 2oap_1 GSPE-2, type II secreti 87.3 0.25 8.6E-06 55.8 2.8 28 115-142 259-286 (511)
304 2f6r_A COA synthase, bifunctio 87.3 0.24 8.3E-06 51.3 2.5 22 118-139 77-98 (281)
305 2nq2_C Hypothetical ABC transp 87.2 0.26 9E-06 50.2 2.7 27 116-142 31-57 (253)
306 2pt7_A CAG-ALFA; ATPase, prote 87.1 0.23 7.8E-06 52.8 2.2 27 116-142 171-197 (330)
307 3vkw_A Replicase large subunit 86.9 0.19 6.5E-06 55.4 1.6 25 225-249 235-259 (446)
308 3zvl_A Bifunctional polynucleo 86.8 0.25 8.6E-06 54.3 2.5 23 119-141 261-283 (416)
309 2ewv_A Twitching motility prot 86.7 0.31 1.1E-05 52.7 3.1 27 115-141 135-161 (372)
310 1w4r_A Thymidine kinase; type 86.7 0.53 1.8E-05 45.9 4.4 23 118-140 22-45 (195)
311 3d31_A Sulfate/molybdate ABC t 86.6 0.4 1.4E-05 51.3 3.8 27 116-142 26-52 (348)
312 3nh6_A ATP-binding cassette SU 86.6 0.34 1.2E-05 50.9 3.2 28 115-142 79-106 (306)
313 3fvq_A Fe(3+) IONS import ATP- 86.5 0.29 9.9E-06 52.6 2.7 26 117-142 31-56 (359)
314 3rlf_A Maltose/maltodextrin im 86.3 0.32 1.1E-05 52.6 2.9 27 116-142 29-55 (381)
315 1z47_A CYSA, putative ABC-tran 86.3 0.32 1.1E-05 52.2 2.9 27 116-142 41-67 (355)
316 1q3t_A Cytidylate kinase; nucl 86.2 0.35 1.2E-05 48.4 3.0 25 117-141 17-41 (236)
317 2d2e_A SUFC protein; ABC-ATPas 86.2 0.31 1.1E-05 49.6 2.6 24 116-139 29-52 (250)
318 3sop_A Neuronal-specific septi 86.0 0.31 1.1E-05 50.2 2.5 24 118-141 4-27 (270)
319 1nlf_A Regulatory protein REPA 85.9 0.32 1.1E-05 50.1 2.6 26 115-140 29-54 (279)
320 2zu0_C Probable ATP-dependent 85.9 0.38 1.3E-05 49.4 3.1 25 116-140 46-70 (267)
321 1cr0_A DNA primase/helicase; R 85.7 0.33 1.1E-05 50.4 2.5 25 117-141 36-60 (296)
322 2dr3_A UPF0273 protein PH0284; 85.6 0.34 1.2E-05 48.3 2.6 23 117-139 24-46 (247)
323 2it1_A 362AA long hypothetical 85.5 0.43 1.5E-05 51.3 3.4 27 116-142 29-55 (362)
324 2pjz_A Hypothetical protein ST 85.5 0.32 1.1E-05 49.9 2.3 26 116-141 30-55 (263)
325 2yyz_A Sugar ABC transporter, 85.4 0.43 1.5E-05 51.3 3.3 27 116-142 29-55 (359)
326 1g29_1 MALK, maltose transport 85.4 0.38 1.3E-05 52.0 2.9 27 116-142 29-55 (372)
327 1v43_A Sugar-binding transport 85.3 0.44 1.5E-05 51.4 3.4 27 116-142 37-63 (372)
328 1rj9_A FTSY, signal recognitio 85.2 0.4 1.4E-05 50.3 2.9 25 117-141 103-127 (304)
329 2bbs_A Cystic fibrosis transme 85.1 0.36 1.2E-05 50.3 2.5 27 116-142 64-90 (290)
330 1xjc_A MOBB protein homolog; s 85.1 0.37 1.3E-05 45.9 2.4 25 117-141 5-29 (169)
331 1oxx_K GLCV, glucose, ABC tran 84.9 0.41 1.4E-05 51.3 2.9 27 116-142 31-57 (353)
332 1a7j_A Phosphoribulokinase; tr 84.8 0.21 7.1E-06 52.1 0.5 24 118-141 7-30 (290)
333 1oix_A RAS-related protein RAB 84.7 0.41 1.4E-05 46.0 2.5 24 118-141 31-54 (191)
334 2f9l_A RAB11B, member RAS onco 84.6 0.46 1.6E-05 45.8 2.9 24 117-140 6-29 (199)
335 1ku5_A HPHA, archaeal histon; 84.6 1.3 4.3E-05 35.6 4.9 50 344-400 20-69 (70)
336 2ocp_A DGK, deoxyguanosine kin 84.5 0.46 1.6E-05 47.7 2.9 24 118-141 4-27 (241)
337 3tui_C Methionine import ATP-b 84.4 0.48 1.6E-05 51.0 3.1 27 116-142 54-80 (366)
338 1np6_A Molybdopterin-guanine d 84.3 0.41 1.4E-05 45.8 2.3 25 117-141 7-31 (174)
339 3b9q_A Chloroplast SRP recepto 84.3 0.47 1.6E-05 49.7 2.9 24 118-141 102-125 (302)
340 3eph_A TRNA isopentenyltransfe 84.2 0.36 1.2E-05 52.5 2.1 24 118-141 4-27 (409)
341 2dyk_A GTP-binding protein; GT 84.2 0.51 1.8E-05 43.2 2.9 22 118-139 3-24 (161)
342 1pzn_A RAD51, DNA repair and r 84.1 0.44 1.5E-05 51.0 2.7 24 117-140 132-155 (349)
343 3cr8_A Sulfate adenylyltranfer 84.1 0.37 1.3E-05 54.9 2.2 26 116-141 369-394 (552)
344 1p5z_B DCK, deoxycytidine kina 84.0 0.29 9.8E-06 49.9 1.1 25 117-141 25-49 (263)
345 3hr8_A Protein RECA; alpha and 84.0 0.43 1.5E-05 51.2 2.5 24 117-140 62-85 (356)
346 1c9k_A COBU, adenosylcobinamid 84.0 0.45 1.5E-05 45.9 2.4 21 119-139 2-22 (180)
347 2v6i_A RNA helicase; membrane, 83.8 0.53 1.8E-05 51.8 3.3 18 116-133 2-19 (431)
348 3fdi_A Uncharacterized protein 83.8 0.52 1.8E-05 46.2 2.8 24 118-141 8-31 (201)
349 1f2t_A RAD50 ABC-ATPase; DNA d 83.8 0.53 1.8E-05 43.7 2.8 24 117-140 24-47 (149)
350 2zej_A Dardarin, leucine-rich 83.6 0.51 1.7E-05 44.9 2.6 22 118-139 4-25 (184)
351 1z2a_A RAS-related protein RAB 83.5 0.56 1.9E-05 43.2 2.8 23 117-139 6-28 (168)
352 2npi_A Protein CLP1; CLP1-PCF1 83.3 0.48 1.7E-05 52.7 2.6 27 115-141 137-163 (460)
353 1knx_A Probable HPR(Ser) kinas 83.2 0.39 1.3E-05 50.5 1.7 25 115-139 146-170 (312)
354 3e70_C DPA, signal recognition 83.2 0.56 1.9E-05 49.8 3.0 24 118-141 131-154 (328)
355 4edh_A DTMP kinase, thymidylat 83.1 0.49 1.7E-05 46.9 2.3 24 118-141 8-31 (213)
356 2wji_A Ferrous iron transport 82.9 0.58 2E-05 43.6 2.7 23 117-139 4-26 (165)
357 1kao_A RAP2A; GTP-binding prot 82.9 0.62 2.1E-05 42.7 2.9 23 117-139 4-26 (167)
358 3t1o_A Gliding protein MGLA; G 82.8 0.67 2.3E-05 44.0 3.1 25 117-141 15-39 (198)
359 2og2_A Putative signal recogni 82.6 0.5 1.7E-05 50.8 2.3 23 119-141 160-182 (359)
360 2nzj_A GTP-binding protein REM 82.5 0.63 2.1E-05 43.3 2.8 23 117-139 5-27 (175)
361 3gd7_A Fusion complex of cysti 82.4 0.52 1.8E-05 51.2 2.4 26 116-141 47-72 (390)
362 1u8z_A RAS-related protein RAL 82.4 0.66 2.3E-05 42.6 2.8 23 117-139 5-27 (168)
363 2ce2_X GTPase HRAS; signaling 82.3 0.59 2E-05 42.7 2.5 22 118-139 5-26 (166)
364 1ek0_A Protein (GTP-binding pr 82.3 0.67 2.3E-05 42.7 2.8 22 118-139 5-26 (170)
365 1z0j_A RAB-22, RAS-related pro 82.2 0.68 2.3E-05 42.7 2.9 23 117-139 7-29 (170)
366 2gk6_A Regulator of nonsense t 82.1 0.87 3E-05 52.7 4.3 37 101-140 183-219 (624)
367 2zts_A Putative uncharacterize 82.0 0.67 2.3E-05 46.1 3.0 21 118-138 32-52 (251)
368 1vma_A Cell division protein F 82.0 0.56 1.9E-05 49.2 2.4 23 119-141 107-129 (306)
369 3v9p_A DTMP kinase, thymidylat 81.8 0.48 1.6E-05 47.5 1.8 24 118-141 27-50 (227)
370 1wms_A RAB-9, RAB9, RAS-relate 81.8 0.72 2.5E-05 43.0 2.9 23 117-139 8-30 (177)
371 2yhs_A FTSY, cell division pro 81.8 0.56 1.9E-05 52.4 2.4 24 118-141 295-318 (503)
372 1z08_A RAS-related protein RAB 81.7 0.72 2.4E-05 42.6 2.8 23 117-139 7-29 (170)
373 2ged_A SR-beta, signal recogni 81.6 0.72 2.5E-05 43.9 2.9 25 116-140 48-72 (193)
374 1nrj_B SR-beta, signal recogni 81.6 0.82 2.8E-05 44.6 3.3 25 116-140 12-36 (218)
375 1tq4_A IIGP1, interferon-induc 81.6 0.99 3.4E-05 49.4 4.3 27 115-141 68-94 (413)
376 2erx_A GTP-binding protein DI- 81.6 0.7 2.4E-05 42.6 2.7 22 117-138 4-25 (172)
377 2a5y_B CED-4; apoptosis; HET: 81.6 0.99 3.4E-05 51.3 4.5 41 98-138 131-174 (549)
378 3sfz_A APAF-1, apoptotic pepti 81.5 0.96 3.3E-05 56.3 4.7 48 92-139 121-170 (1249)
379 1c1y_A RAS-related protein RAP 81.5 0.74 2.5E-05 42.3 2.8 22 118-139 5-26 (167)
380 1ky3_A GTP-binding protein YPT 81.5 0.75 2.5E-05 43.0 2.9 23 117-139 9-31 (182)
381 2zr9_A Protein RECA, recombina 81.5 0.64 2.2E-05 49.7 2.7 24 117-140 62-85 (349)
382 3q85_A GTP-binding protein REM 81.4 0.68 2.3E-05 42.8 2.6 21 118-138 4-24 (169)
383 2axn_A 6-phosphofructo-2-kinas 81.4 0.57 2E-05 53.0 2.4 24 118-141 37-60 (520)
384 1r2q_A RAS-related protein RAB 81.4 0.75 2.6E-05 42.3 2.8 23 117-139 7-29 (170)
385 3b0c_T CENP-T, centromere prot 81.3 2 7E-05 37.7 5.4 51 344-401 21-71 (111)
386 3q72_A GTP-binding protein RAD 81.3 0.61 2.1E-05 43.0 2.2 21 117-137 3-23 (166)
387 3lda_A DNA repair protein RAD5 81.3 0.59 2E-05 51.0 2.4 21 118-138 180-200 (400)
388 2vp4_A Deoxynucleoside kinase; 81.2 0.48 1.6E-05 47.3 1.5 22 118-139 22-43 (230)
389 1g16_A RAS-related protein SEC 81.1 0.69 2.4E-05 42.7 2.5 23 117-139 4-26 (170)
390 2lkc_A Translation initiation 81.0 0.97 3.3E-05 42.1 3.5 25 115-139 7-31 (178)
391 3bc1_A RAS-related protein RAB 81.0 0.78 2.7E-05 43.3 2.8 23 117-139 12-34 (195)
392 2hxs_A RAB-26, RAS-related pro 80.9 0.8 2.7E-05 42.7 2.9 23 117-139 7-29 (178)
393 2wjg_A FEOB, ferrous iron tran 80.9 0.75 2.6E-05 43.5 2.7 23 117-139 8-30 (188)
394 1r8s_A ADP-ribosylation factor 80.8 0.81 2.8E-05 42.0 2.8 22 118-139 2-23 (164)
395 1z0f_A RAB14, member RAS oncog 80.8 0.8 2.7E-05 42.6 2.8 23 117-139 16-38 (179)
396 1v5w_A DMC1, meiotic recombina 80.8 0.79 2.7E-05 48.8 3.1 22 118-139 124-145 (343)
397 2krk_A 26S protease regulatory 80.7 1.5 5.1E-05 36.7 4.1 39 367-405 46-84 (86)
398 3tw8_B RAS-related protein RAB 80.6 0.74 2.5E-05 43.0 2.5 22 117-138 10-31 (181)
399 3tmk_A Thymidylate kinase; pho 80.5 0.64 2.2E-05 46.2 2.1 25 117-141 6-30 (216)
400 3v9r_A MHF1, uncharacterized p 80.4 2.2 7.5E-05 36.0 5.0 49 345-400 30-78 (90)
401 3lv8_A DTMP kinase, thymidylat 80.4 0.61 2.1E-05 47.0 1.9 25 117-141 28-52 (236)
402 2z43_A DNA repair and recombin 80.4 0.71 2.4E-05 48.7 2.6 24 117-140 108-131 (324)
403 1ko7_A HPR kinase/phosphatase; 80.4 0.6 2.1E-05 49.1 1.9 25 116-140 144-168 (314)
404 2px0_A Flagellar biosynthesis 80.3 0.61 2.1E-05 48.7 2.0 25 117-141 106-130 (296)
405 4dsu_A GTPase KRAS, isoform 2B 80.1 0.88 3E-05 42.8 2.9 23 117-139 5-27 (189)
406 2gj8_A MNME, tRNA modification 80.1 0.74 2.5E-05 43.3 2.3 23 117-139 5-27 (172)
407 1upt_A ARL1, ADP-ribosylation 80.0 0.89 3E-05 42.0 2.8 23 116-138 7-29 (171)
408 2oil_A CATX-8, RAS-related pro 80.0 0.88 3E-05 43.3 2.9 23 117-139 26-48 (193)
409 2fn4_A P23, RAS-related protei 79.9 0.81 2.8E-05 42.7 2.5 23 117-139 10-32 (181)
410 1f1e_A Histone fold protein; a 79.9 3.7 0.00013 38.2 6.9 54 344-404 96-149 (154)
411 2y8e_A RAB-protein 6, GH09086P 79.8 0.8 2.7E-05 42.6 2.5 23 117-139 15-37 (179)
412 2a9k_A RAS-related protein RAL 79.8 0.9 3.1E-05 42.6 2.8 23 117-139 19-41 (187)
413 3clv_A RAB5 protein, putative; 79.8 0.91 3.1E-05 43.1 2.9 23 117-139 8-30 (208)
414 3con_A GTPase NRAS; structural 79.7 0.9 3.1E-05 43.1 2.8 23 117-139 22-44 (190)
415 3to5_A CHEY homolog; alpha(5)b 79.7 0.67 2.3E-05 42.2 1.8 39 19-65 93-131 (134)
416 2efe_B Small GTP-binding prote 79.6 0.92 3.2E-05 42.4 2.8 23 117-139 13-35 (181)
417 3ld9_A DTMP kinase, thymidylat 79.4 0.78 2.7E-05 45.8 2.3 25 117-141 22-46 (223)
418 1m7b_A RND3/RHOE small GTP-bin 79.4 0.83 2.9E-05 43.2 2.5 23 117-139 8-30 (184)
419 3qks_A DNA double-strand break 79.3 0.81 2.8E-05 44.8 2.4 26 116-141 23-48 (203)
420 1g8f_A Sulfate adenylyltransfe 79.3 0.69 2.3E-05 52.1 2.0 25 117-141 396-420 (511)
421 2dpy_A FLII, flagellum-specifi 79.2 0.98 3.4E-05 49.9 3.3 26 116-141 157-182 (438)
422 3kkq_A RAS-related protein M-R 79.1 0.97 3.3E-05 42.5 2.8 23 117-139 19-41 (183)
423 4tmk_A Protein (thymidylate ki 79.1 0.72 2.5E-05 45.7 2.0 24 118-141 5-28 (213)
424 1u94_A RECA protein, recombina 79.0 0.96 3.3E-05 48.5 3.0 25 116-140 63-87 (356)
425 2obl_A ESCN; ATPase, hydrolase 79.0 0.91 3.1E-05 48.5 2.8 26 116-141 71-96 (347)
426 2g6b_A RAS-related protein RAB 79.0 0.99 3.4E-05 42.1 2.8 23 117-139 11-33 (180)
427 1x6v_B Bifunctional 3'-phospho 78.9 0.76 2.6E-05 53.0 2.3 23 118-140 54-76 (630)
428 1pui_A ENGB, probable GTP-bind 78.8 0.5 1.7E-05 45.8 0.7 23 117-139 27-49 (210)
429 3ice_A Transcription terminati 78.7 1.5 5.2E-05 47.3 4.4 26 115-140 173-198 (422)
430 1n1j_A NF-YB; histone-like PAI 78.7 8.4 0.00029 32.5 8.3 53 341-400 21-73 (93)
431 2i1q_A DNA repair and recombin 78.6 0.8 2.7E-05 48.1 2.2 23 117-139 99-121 (322)
432 1mh1_A RAC1; GTP-binding, GTPa 78.6 1 3.5E-05 42.2 2.8 23 117-139 6-28 (186)
433 4ag6_A VIRB4 ATPase, type IV s 78.5 1.1 3.8E-05 48.5 3.4 26 115-140 34-59 (392)
434 2bme_A RAB4A, RAS-related prot 78.5 0.93 3.2E-05 42.7 2.5 23 117-139 11-33 (186)
435 1bif_A 6-phosphofructo-2-kinas 78.4 0.95 3.2E-05 50.4 2.9 24 117-140 40-63 (469)
436 3gmt_A Adenylate kinase; ssgci 78.3 0.92 3.1E-05 45.4 2.5 23 119-141 11-33 (230)
437 1qkk_A DCTD, C4-dicarboxylate 78.3 1.8 6.3E-05 39.3 4.4 49 21-77 83-131 (155)
438 2gf9_A RAS-related protein RAB 78.3 1.1 3.6E-05 42.6 2.8 23 117-139 23-45 (189)
439 3h1t_A Type I site-specific re 78.3 3 0.0001 47.6 7.2 25 115-139 197-221 (590)
440 3ihw_A Centg3; RAS, centaurin, 78.2 1.1 3.6E-05 42.7 2.8 23 117-139 21-43 (184)
441 1m8p_A Sulfate adenylyltransfe 78.2 0.82 2.8E-05 52.3 2.3 24 118-141 398-421 (573)
442 1svi_A GTP-binding protein YSX 78.2 0.85 2.9E-05 43.4 2.1 24 116-139 23-46 (195)
443 2wjy_A Regulator of nonsense t 78.1 1.4 4.7E-05 52.6 4.3 25 116-140 371-395 (800)
444 3bwd_D RAC-like GTP-binding pr 78.1 1.1 3.7E-05 41.9 2.8 24 116-139 8-31 (182)
445 2bov_A RAla, RAS-related prote 78.1 1.1 3.7E-05 43.0 2.8 23 117-139 15-37 (206)
446 2cxx_A Probable GTP-binding pr 78.1 0.87 3E-05 43.0 2.1 22 118-139 3-24 (190)
447 1vg8_A RAS-related protein RAB 78.1 1.1 3.7E-05 43.1 2.9 23 117-139 9-31 (207)
448 1z06_A RAS-related protein RAB 78.0 1.1 3.8E-05 42.5 2.9 23 117-139 21-43 (189)
449 2qag_B Septin-6, protein NEDD5 77.9 0.78 2.7E-05 50.4 1.9 22 119-140 45-66 (427)
450 1yqt_A RNAse L inhibitor; ATP- 77.9 1.2 4.1E-05 50.6 3.6 26 116-141 47-72 (538)
451 3c5c_A RAS-like protein 12; GD 77.9 1.1 3.9E-05 42.6 2.9 23 117-139 22-44 (187)
452 3tkl_A RAS-related protein RAB 77.9 1.1 3.8E-05 42.5 2.8 23 117-139 17-39 (196)
453 2yv5_A YJEQ protein; hydrolase 77.7 1.1 3.7E-05 46.8 3.0 24 117-141 166-189 (302)
454 4dra_A Centromere protein S; D 77.7 2.8 9.4E-05 36.8 4.9 49 345-400 45-93 (113)
455 3b5x_A Lipid A export ATP-bind 77.6 1.2 4E-05 51.1 3.4 28 115-142 368-395 (582)
456 2a5j_A RAS-related protein RAB 77.6 1.2 3.9E-05 42.5 2.9 22 118-139 23-44 (191)
457 1u0l_A Probable GTPase ENGC; p 77.5 0.93 3.2E-05 47.3 2.3 25 117-141 170-194 (301)
458 3pqc_A Probable GTP-binding pr 77.5 1.1 3.6E-05 42.5 2.6 23 117-139 24-46 (195)
459 2atv_A RERG, RAS-like estrogen 77.5 1.2 4E-05 42.7 2.9 24 116-139 28-51 (196)
460 1zbd_A Rabphilin-3A; G protein 77.5 1.1 3.7E-05 43.0 2.7 23 117-139 9-31 (203)
461 3hdt_A Putative kinase; struct 77.4 0.9 3.1E-05 45.3 2.1 24 118-141 16-39 (223)
462 3bh0_A DNAB-like replicative h 77.4 1.1 3.6E-05 47.2 2.8 23 117-139 69-91 (315)
463 1zd9_A ADP-ribosylation factor 77.4 1.2 4E-05 42.4 2.8 23 117-139 23-45 (188)
464 2iwr_A Centaurin gamma 1; ANK 77.4 0.97 3.3E-05 42.3 2.2 23 117-139 8-30 (178)
465 3kw6_A 26S protease regulatory 77.3 6.9 0.00023 31.6 7.2 49 353-404 27-75 (78)
466 3dz8_A RAS-related protein RAB 77.3 1 3.6E-05 42.8 2.5 24 117-140 24-47 (191)
467 3reg_A RHO-like small GTPase; 77.3 1.2 4E-05 42.5 2.8 23 117-139 24-46 (194)
468 1x3s_A RAS-related protein RAB 77.2 1.2 4.1E-05 42.2 2.8 23 117-139 16-38 (195)
469 2qm8_A GTPase/ATPase; G protei 77.2 1.1 3.9E-05 47.5 2.9 25 116-140 55-79 (337)
470 2rcn_A Probable GTPase ENGC; Y 77.2 1.1 3.6E-05 48.2 2.7 26 116-141 215-240 (358)
471 2p5s_A RAS and EF-hand domain 77.2 1.2 4.1E-05 42.8 2.9 24 116-139 28-51 (199)
472 1m2o_B GTP-binding protein SAR 77.1 1.1 3.6E-05 42.9 2.5 24 116-139 23-46 (190)
473 3io5_A Recombination and repai 77.1 1 3.5E-05 47.4 2.4 22 118-139 30-51 (333)
474 3euj_A Chromosome partition pr 77.0 1.1 3.6E-05 50.2 2.7 26 117-142 30-55 (483)
475 2fwr_A DNA repair protein RAD2 77.0 2.2 7.6E-05 47.1 5.4 24 117-140 109-132 (472)
476 1fzq_A ADP-ribosylation factor 76.9 1 3.4E-05 42.7 2.2 23 116-138 16-38 (181)
477 2fg5_A RAB-22B, RAS-related pr 76.8 1.1 3.8E-05 42.7 2.5 23 117-139 24-46 (192)
478 3t5g_A GTP-binding protein RHE 76.8 1.1 3.7E-05 42.1 2.4 22 117-138 7-28 (181)
479 1ksh_A ARF-like protein 2; sma 76.8 1.1 3.9E-05 42.2 2.6 24 115-138 17-40 (186)
480 2r8r_A Sensor protein; KDPD, P 76.7 1.2 4E-05 44.6 2.6 26 116-141 6-31 (228)
481 2wsm_A Hydrogenase expression/ 76.7 1.2 4.3E-05 43.4 2.9 25 116-140 30-54 (221)
482 3cmu_A Protein RECA, recombina 76.7 1.1 3.8E-05 58.0 3.1 26 115-140 1426-1451(2050)
483 2il1_A RAB12; G-protein, GDP, 76.6 1.1 3.9E-05 42.7 2.6 21 118-138 28-48 (192)
484 1tf7_A KAIC; homohexamer, hexa 76.6 1 3.6E-05 50.8 2.6 25 117-141 282-306 (525)
485 1qhl_A Protein (cell division 76.6 0.6 2.1E-05 46.8 0.5 24 119-142 30-53 (227)
486 3cbq_A GTP-binding protein REM 76.5 0.98 3.4E-05 43.5 2.0 22 117-138 24-45 (195)
487 1tf7_A KAIC; homohexamer, hexa 76.5 1.1 3.8E-05 50.7 2.7 25 116-140 39-65 (525)
488 3b60_A Lipid A export ATP-bind 76.4 1.1 3.8E-05 51.3 2.8 27 116-142 369-395 (582)
489 3lxx_A GTPase IMAP family memb 76.2 1.3 4.3E-05 44.2 2.8 23 117-139 30-52 (239)
490 3lfu_A DNA helicase II; SF1 he 76.2 1.1 3.8E-05 51.8 2.7 27 114-140 20-47 (647)
491 3oes_A GTPase rhebl1; small GT 76.1 1.2 4E-05 42.9 2.5 23 117-139 25-47 (201)
492 2bcg_Y Protein YP2, GTP-bindin 76.1 1.2 4E-05 43.0 2.5 23 117-139 9-31 (206)
493 2gf0_A GTP-binding protein DI- 76.1 1.2 4.1E-05 42.4 2.5 24 116-139 8-31 (199)
494 3cph_A RAS-related protein SEC 76.0 1.3 4.5E-05 42.7 2.8 23 117-139 21-43 (213)
495 4aby_A DNA repair protein RECN 76.0 0.74 2.5E-05 50.1 1.1 27 116-142 60-86 (415)
496 1gwn_A RHO-related GTP-binding 75.9 1.2 4.1E-05 43.3 2.5 23 117-139 29-51 (205)
497 1moz_A ARL1, ADP-ribosylation 75.8 0.81 2.8E-05 43.0 1.2 23 115-137 17-39 (183)
498 2fu5_C RAS-related protein RAB 75.7 0.93 3.2E-05 42.6 1.6 22 117-138 9-30 (183)
499 2ew1_A RAS-related protein RAB 75.6 1.2 4.2E-05 43.1 2.5 23 117-139 27-49 (201)
500 3ozx_A RNAse L inhibitor; ATP 75.5 1.2 4E-05 50.6 2.6 26 117-142 295-320 (538)
No 1
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=100.00 E-value=5.9e-35 Score=318.72 Aligned_cols=312 Identities=37% Similarity=0.570 Sum_probs=261.8
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (765)
.++++|++|+|++.+++++..+.+.+..++|||+||||||||++|++++..+++.....+++|+|....++..|..|..
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 96 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLS- 96 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSC-
T ss_pred CCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhc-
Confidence 3567899999999999888777777777899999999999999999999999876666678899988777766666652
Q ss_pred ccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHH
Q 004256 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (765)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l 248 (765)
+. ......+|+.++.+.++++++|.+++.+....+...+.+|++..+++|+||||||+.++...|+.|+.+|
T Consensus 97 ~~--------~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~l 168 (350)
T 1g8p_A 97 TN--------VIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVA 168 (350)
T ss_dssp CC--------EEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHH
T ss_pred cc--------cccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHH
Confidence 11 1113568888999999999999887777666666677899999999999999999999999999999999
Q ss_pred HcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcccccc
Q 004256 249 TEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEE 328 (765)
Q Consensus 249 ~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~ 328 (765)
+++...+.+.|.....+.++++|+|+|+.++.++++|++||++.+.+..|++.+.+.+|+.....+......+...+...
T Consensus 169 e~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 248 (350)
T 1g8p_A 169 QSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPK 248 (350)
T ss_dssp HHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccc
Confidence 99988899999999999999999999998889999999999987788866678888899887665544443333333333
Q ss_pred CcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCcC
Q 004256 329 TDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSI 408 (765)
Q Consensus 329 ~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~hR~~ 408 (765)
.......+..++....++.++++++++|++++...++.+.|..+.+++.|.++|.++|+..|+.+||.+|+.+++.||.+
T Consensus 249 ~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~~ 328 (350)
T 1g8p_A 249 DMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRLR 328 (350)
T ss_dssp HHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGCC
T ss_pred hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhccc
Confidence 44455666666666667899999999999999999887899999999999999999999999999999999999999987
Q ss_pred C
Q 004256 409 I 409 (765)
Q Consensus 409 ~ 409 (765)
.
T Consensus 329 ~ 329 (350)
T 1g8p_A 329 R 329 (350)
T ss_dssp -
T ss_pred c
Confidence 3
No 2
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=100.00 E-value=7.2e-35 Score=322.81 Aligned_cols=277 Identities=19% Similarity=0.273 Sum_probs=237.9
Q ss_pred cccchhHHHHHHhcCCCcccccCCCCccccCCCCccHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCceeec
Q 004256 21 HLQQSCSVVSSLKLHPLLFSYSPPPFFKFRTRPKHHRFFHVRASSSNATLDSANGAVAAASEDQDSYGRQFFPLAAVVGQ 100 (765)
Q Consensus 21 ~~~~~~~~~~~~~~g~~~~d~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ivG~ 100 (765)
.......++++++.| |+||+.|||.... +...+++++..+.+..++..+..... ..+..++|+
T Consensus 80 ~~~~~~~~~~a~~~G--a~dyl~KP~~~~~------L~~~i~~~l~~~~l~~~~~~l~~~~~---------~~~~~~ig~ 142 (387)
T 1ny5_A 80 GHGTIKTAVEAMKMG--AYDFLTKPCMLEE------IELTINKAIEHRKLRKENELLRREKD---------LKEEEYVFE 142 (387)
T ss_dssp ETTCHHHHHHHHTTT--CCEEEEESCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH---------TTCCCCCCC
T ss_pred CCCCHHHHHHHHhcC--ceEEecCCCCHHH------HHHHHHHHHHHHHHHHHHHHhhhhhh---------hcchhhhhc
Confidence 345678899999999 9999999997544 78888888877766665554433211 014568999
Q ss_pred hHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCccc
Q 004256 101 DAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLK 178 (765)
Q Consensus 101 ~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (765)
++.++.+ .+..+++...+|||+|++||||+++|++||..+++
T Consensus 143 s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r------------------------------------ 186 (387)
T 1ny5_A 143 SPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR------------------------------------ 186 (387)
T ss_dssp SHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT------------------------------------
T ss_pred cHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCC------------------------------------
Confidence 9988877 56677888899999999999999999999999875
Q ss_pred ccccCCCeEeCCCCCc-----ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCce
Q 004256 179 TQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVN 253 (765)
Q Consensus 179 ~~~~~~~~v~l~~~~~-----e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~ 253 (765)
...||+.++|... +++|||+ +++.++|.....+|++..|+|||||||||+.|+.++|.+|+++|+++.
T Consensus 187 ---~~~~fv~v~~~~~~~~~~~~elfg~---~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~- 259 (387)
T 1ny5_A 187 ---SKEPFVALNVASIPRDIFEAELFGY---EKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGK- 259 (387)
T ss_dssp ---TTSCEEEEETTTSCHHHHHHHHHCB---CTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSE-
T ss_pred ---CCCCeEEEecCCCCHHHHHHHhcCC---CCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCc-
Confidence 4678988887753 5688997 588999998889999999999999999999999999999999999998
Q ss_pred EEEeCCeeEEeeCceEEEEeecC------CCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccc
Q 004256 254 IVEREGISFKHPCKPLLIATYNP------EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (765)
Q Consensus 254 ~v~r~G~~~~~p~~~~lIat~N~------~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~ 327 (765)
+.|.|.....+.++++|++||. .+|.|+++||+|++.. .+.+||+++|++||..++.+|+...+..+++...
T Consensus 260 -~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~-~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~ 337 (387)
T 1ny5_A 260 -FYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVI-EIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVE 337 (387)
T ss_dssp -ECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTE-EEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred -EEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCC-eecCCcchhccccHHHHHHHHHHHHHHHcCCCCC
Confidence 8899999999999999999997 4689999999999987 6899999999999999999999999888888778
Q ss_pred cCcHHHHHHHHHhcccCCccCCHHHHHHHHHH
Q 004256 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVME 359 (765)
Q Consensus 328 ~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~ 359 (765)
.+++.+...+..|.|||||+...++++.++-+
T Consensus 338 ~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 338 GFTKSAQELLLSYPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp EECHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 89999999999999999998888887776544
No 3
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=100.00 E-value=7.4e-34 Score=312.36 Aligned_cols=269 Identities=22% Similarity=0.301 Sum_probs=226.3
Q ss_pred cccchhHHHHHHhcCCCcccccCCCCccccCCCCccHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCceeec
Q 004256 21 HLQQSCSVVSSLKLHPLLFSYSPPPFFKFRTRPKHHRFFHVRASSSNATLDSANGAVAAASEDQDSYGRQFFPLAAVVGQ 100 (765)
Q Consensus 21 ~~~~~~~~~~~~~~g~~~~d~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ivG~ 100 (765)
.......++++++.| |+||+.|||.... +...+++++...... .. . . .-..++|+
T Consensus 80 ~~~~~~~~~~a~~~G--a~~yl~KP~~~~~------L~~~i~~~l~~~~~~-------~~----~---~---~~~~~ig~ 134 (368)
T 3dzd_A 80 GHGSVDTAVKAIKKG--AYEFLEKPFSVER------FLLTIKHAFEEYSKK-------AP----P---Q---EEIEFVGE 134 (368)
T ss_dssp CSSCCHHHHHHHHHT--CCEEEESSCCHHH------HHHHHHHHHHHHSCC-------CC----C---C---CCCCCCCC
T ss_pred CCCCHHHHHHHHhcC--cceEEeCCCCHHH------HHHHHHHHHHHhhhh-------hc----c---c---cccccccc
Confidence 344567899999999 9999999997543 566666654322110 00 0 0 11358999
Q ss_pred hHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCccc
Q 004256 101 DAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLK 178 (765)
Q Consensus 101 ~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (765)
++.+..+ .+..+++...+|||.||+||||+++|++||..+++
T Consensus 135 s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r------------------------------------ 178 (368)
T 3dzd_A 135 HPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGR------------------------------------ 178 (368)
T ss_dssp SHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCC------------------------------------
T ss_pred chHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccc------------------------------------
Confidence 9988877 56667788899999999999999999999999875
Q ss_pred ccccCCCeEeCCCC-----CcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCce
Q 004256 179 TQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVN 253 (765)
Q Consensus 179 ~~~~~~~~v~l~~~-----~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~ 253 (765)
..+|+.++|. ..+++|||+ +++.++|.....+|+++.|+|||||||||+.|+..+|.+||++|+++.
T Consensus 179 ----~~~fv~vnc~~~~~~~~~~~lfg~---~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~- 250 (368)
T 3dzd_A 179 ----KGAFVDLNCASIPQELAESELFGH---EKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGS- 250 (368)
T ss_dssp ----CSCEEEEESSSSCTTTHHHHHHEE---CSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSE-
T ss_pred ----cCCcEEEEcccCChHHHHHHhcCc---cccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCC-
Confidence 2236665554 556788998 589999998889999999999999999999999999999999999998
Q ss_pred EEEeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccc
Q 004256 254 IVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (765)
Q Consensus 254 ~v~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~ 327 (765)
+.+.|.....+.++++|++||.+ +|.|+++||+|++.+ .|.+||+++|++||..++.+|+...+..+++...
T Consensus 251 -~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~-~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~ 328 (368)
T 3dzd_A 251 -FTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVF-QIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCF 328 (368)
T ss_dssp -ECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSE-EEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCC
T ss_pred -cccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCe-EEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCC
Confidence 88999999999999999999973 589999999999987 6889999999999999999999999988888888
Q ss_pred cCcHHHHHHHHHhcccCCccCCHHHHHHHHHHH
Q 004256 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVMEA 360 (765)
Q Consensus 328 ~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a 360 (765)
.+++.+...+..|.|||||+...++++.++-++
T Consensus 329 ~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 329 ELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 899999999999999999999999888877554
No 4
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.95 E-value=1.9e-28 Score=262.62 Aligned_cols=217 Identities=23% Similarity=0.316 Sum_probs=182.6
Q ss_pred ceeechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccc
Q 004256 96 AVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDT 173 (765)
Q Consensus 96 ~ivG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (765)
.|+|+++.++.+ .+..+++...+|||+||+|||||++|++||..+++
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~------------------------------- 51 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSAR------------------------------- 51 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSC-------------------------------
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcc-------------------------------
Confidence 589999988887 55566678899999999999999999999999875
Q ss_pred cCcccccccCCCeEeCCCCCc-----ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHH
Q 004256 174 AGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (765)
Q Consensus 174 ~~~~~~~~~~~~~v~l~~~~~-----e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l 248 (765)
...||+.++|... +++|||+ +++.++|......|.+..+++|+||||||+.|+...|..|+.+|
T Consensus 52 --------~~~~~v~v~~~~~~~~l~~~~lfg~---~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l 120 (304)
T 1ojl_A 52 --------SDRPLVTLNCAALNESLLESELFGH---EKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAI 120 (304)
T ss_dssp --------SSSCCCEEECSSCCHHHHHHHHTCC---CSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHH
T ss_pred --------cCCCeEEEeCCCCChHHHHHHhcCc---cccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHH
Confidence 3567777766643 4577887 47788888777899999999999999999999999999999999
Q ss_pred HcCceEEEeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHh
Q 004256 249 TEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (765)
Q Consensus 249 ~~~~~~v~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~ 322 (765)
+++. +.+.|.....+.++++|++||.. +|.|+++|++||+.+ .+.+|++++|++||..++.+|+...+..+
T Consensus 121 ~~~~--~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~-~i~lPpL~eR~edi~~l~~~~l~~~~~~~ 197 (304)
T 1ojl_A 121 QERE--VQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVV-AIEMPSLRQRREDIPLLADHFLRRFAERN 197 (304)
T ss_dssp HSSB--CCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSE-EEECCCSGGGGGGHHHHHHHHHHHHHHHT
T ss_pred hcCE--eeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCee-EEeccCHHHhHhhHHHHHHHHHHHHHHHh
Confidence 9998 78999998889999999999974 478999999999865 68889999999999999999998887777
Q ss_pred ccccccCcHHHHHHHHHhcccCCccCCHHHHHHHH
Q 004256 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLV 357 (765)
Q Consensus 323 ~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~ 357 (765)
+.....+++.+...+..|.||+|++...++++.++
T Consensus 198 ~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~ 232 (304)
T 1ojl_A 198 RKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAV 232 (304)
T ss_dssp TCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHH
T ss_pred ccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 76666788888889999999998776666555443
No 5
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.94 E-value=4.5e-26 Score=247.04 Aligned_cols=256 Identities=23% Similarity=0.306 Sum_probs=190.9
Q ss_pred CCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccc
Q 004256 94 LAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDT 173 (765)
Q Consensus 94 f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (765)
+..|+|++.+++.+..+... .++|||+||||||||++|++++..++.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~~~------------------------------- 72 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTMDL------------------------------- 72 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHTTC-------------------------------
T ss_pred ccceeCcHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHhCC-------------------------------
Confidence 35799999999998766653 579999999999999999999998752
Q ss_pred cCcccccccCCCeEeCCC--CCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcC
Q 004256 174 AGNLKTQIARSPFVQIPL--GVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG 251 (765)
Q Consensus 174 ~~~~~~~~~~~~~v~l~~--~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~ 251 (765)
+|+.+.+ ..+..+++|..... ...|...+.+|.+ .+++||||||+.+++..++.|+++|+++
T Consensus 73 -----------~~~~i~~~~~~~~~~l~g~~~~~--~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~~~~~Ll~~l~~~ 136 (331)
T 2r44_A 73 -----------DFHRIQFTPDLLPSDLIGTMIYN--QHKGNFEVKKGPV---FSNFILADEVNRSPAKVQSALLECMQEK 136 (331)
T ss_dssp -----------CEEEEECCTTCCHHHHHEEEEEE--TTTTEEEEEECTT---CSSEEEEETGGGSCHHHHHHHHHHHHHS
T ss_pred -----------CeEEEecCCCCChhhcCCceeec--CCCCceEeccCcc---cccEEEEEccccCCHHHHHHHHHHHhcC
Confidence 2322222 33445566653221 1223333445555 3689999999999999999999999999
Q ss_pred ceEEEeCCeeEEeeCceEEEEeecCCC--CC--cchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccc
Q 004256 252 VNIVEREGISFKHPCKPLLIATYNPEE--GV--VREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (765)
Q Consensus 252 ~~~v~r~G~~~~~p~~~~lIat~N~~e--g~--l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~ 327 (765)
.+. ..|.....|.+|++|+|+||.+ +. ++++|++||++.+.+.. ++.+.+.+|+....... . ......
T Consensus 137 ~~~--~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~-p~~~~~~~il~~~~~~~--~---~~~~~~ 208 (331)
T 2r44_A 137 QVT--IGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTY-LDKESELEVMRRVSNMN--F---NYQVQK 208 (331)
T ss_dssp EEE--ETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCC-CCHHHHHHHHHHHHCTT--C---CCCCCC
T ss_pred cee--eCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCC-CCHHHHHHHHHhccccC--c---chhccc
Confidence 844 4788888999999999999865 33 89999999998778884 57888888876432210 0 000111
Q ss_pred cCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCC----------------CCCCChHHHHHHHHHHHHHHcCCCCCC
Q 004256 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG----------------CQGHRAELYAARVAKCLAALEGREKVN 391 (765)
Q Consensus 328 ~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g----------------~~s~Ra~i~llr~A~a~A~l~gr~~Vt 391 (765)
.. ....+...+....++.+++++++++++++.... ..|.|+.+.+++.|+++|.++|++.|+
T Consensus 209 ~~--~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~ 286 (331)
T 2r44_A 209 IV--SKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVL 286 (331)
T ss_dssp CS--CHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCC
T ss_pred cC--CHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCC
Confidence 11 123344444555689999999999998874321 227999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcC
Q 004256 392 VDDLKKAVELVILPRSI 408 (765)
Q Consensus 392 ~edv~~A~~lvl~hR~~ 408 (765)
++||.+|+..++.||..
T Consensus 287 ~~dv~~~~~~vl~~r~~ 303 (331)
T 2r44_A 287 PEDIKEVAYDILNHRII 303 (331)
T ss_dssp HHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHHHhHhhcc
Confidence 99999999999999975
No 6
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.94 E-value=1.7e-26 Score=242.34 Aligned_cols=220 Identities=21% Similarity=0.274 Sum_probs=162.7
Q ss_pred CCCCceeechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccc
Q 004256 92 FPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (765)
+.|+.|+|++..++.+ .+..+.....+|||+||+|||||++|++||..+++
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~--------------------------- 55 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR--------------------------- 55 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT---------------------------
T ss_pred cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc---------------------------
Confidence 4688899999988877 34555566789999999999999999999998764
Q ss_pred cccccCcccccccCCCeEeCCCCCc-----ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHH
Q 004256 170 EYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (765)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~l~~~~~-----e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~L 244 (765)
...+|+.++|... +..+||.. ++.++|......|++..+++|+||||||+.++...|..|
T Consensus 56 ------------~~~~~~~v~~~~~~~~~~~~~l~g~~---~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~L 120 (265)
T 2bjv_A 56 ------------WQGPFISLNCAALNENLLDSELFGHE---AGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 (265)
T ss_dssp ------------TTSCEEEEEGGGSCHHHHHHHHHCCC------------CCCCHHHHTTTSEEEEESGGGSCHHHHHHH
T ss_pred ------------cCCCeEEEecCCCChhHHHHHhcCCc---ccccccccccccchhhhcCCcEEEEechHhcCHHHHHHH
Confidence 3467777776643 34567753 556666666678999999999999999999999999999
Q ss_pred HHHHHcCceEEEeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhh
Q 004256 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (765)
Q Consensus 245 l~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~ 318 (765)
+.+|+++. +.+.|.....+.++++|+|+|+. .+.|+++|++||+.. .+.+|+++++++||..++.+|+...
T Consensus 121 l~~l~~~~--~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~-~i~lp~L~~R~~di~~l~~~~l~~~ 197 (265)
T 2bjv_A 121 LRVIEYGE--LERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFD-VVQLPPLRERESDIMLMAEYFAIQM 197 (265)
T ss_dssp HHHHHHCE--ECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSE-EEECCCGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC--eecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCc-EEeCCChhhhhHHHHHHHHHHHHHH
Confidence 99999997 67888887788899999999984 467999999999864 6788999999999999999998776
Q ss_pred HHHhcccc-ccCcHHHHHHHHHhcccCCccCCHHHHHHH
Q 004256 319 NEVFKMVE-EETDLAKTQIILAREYLKDVAIGREQLKYL 356 (765)
Q Consensus 319 ~~~~~~~~-~~~~~~~~~il~a~~~~~nv~i~~~~l~~l 356 (765)
+...+... ..+++.+...+..+.|++|++...++++.+
T Consensus 198 ~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~ 236 (265)
T 2bjv_A 198 CREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERS 236 (265)
T ss_dssp HHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred HHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 66554433 356777777777788888766555554443
No 7
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.94 E-value=1.3e-26 Score=254.81 Aligned_cols=241 Identities=17% Similarity=0.131 Sum_probs=174.3
Q ss_pred eeechHHHHHHHHhhhcCC-----CCcEEEECCCCcHHHHHHHHH-HhhCCCcchhcccccCCCCCCCCccccccccccc
Q 004256 97 VVGQDAIKTALLLGAIDRE-----IGGIAISGRRGTAKTVMARGL-HAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (765)
Q Consensus 97 ivG~~~~~~aL~l~~~~~~-----~~~VLi~Ge~GTGKt~lAr~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (765)
|+||+.+|++|+++++... ..||||.|+||| ||++||++ |.++|+.
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~--------------------------- 266 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRG--------------------------- 266 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSE---------------------------
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCCe---------------------------
Confidence 8999999999988887321 128999999999 99999999 9999861
Q ss_pred ccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHc
Q 004256 171 YDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTE 250 (765)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~ 250 (765)
.|+... ..+...|.++ . +.. +| +.+++|.+..||+||||||||+++++..|..|+++|++
T Consensus 267 --------------~ft~g~-~ss~~gLt~s-~--r~~-tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe 326 (506)
T 3f8t_A 267 --------------VYVDLR-RTELTDLTAV-L--KED-RG-WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDK 326 (506)
T ss_dssp --------------EEEEGG-GCCHHHHSEE-E--EES-SS-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred --------------EEecCC-CCCccCceEE-E--EcC-CC-cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhC
Confidence 121110 1112234443 1 112 57 88899999999999999999999999999999999999
Q ss_pred CceEEEeCCeeEEeeCceEEEEeecCCC----------CCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHH
Q 004256 251 GVNIVEREGISFKHPCKPLLIATYNPEE----------GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (765)
Q Consensus 251 ~~~~v~r~G~~~~~p~~~~lIat~N~~e----------g~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~ 320 (765)
+.+++. |. .+|++|.||||+||++ ..|+++|+|||++++.+...++.+...+ .
T Consensus 327 ~~VtI~--G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e----------~--- 389 (506)
T 3f8t_A 327 GTVTVD--GI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEE----------Q--- 389 (506)
T ss_dssp SEEEET--TE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC-----------------------
T ss_pred CcEEEC--CE--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhc----------c---
Confidence 996665 66 8999999999999975 3688999999988754332233332111 0
Q ss_pred HhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHh--------------CCCCCCChHHHHHHHHHHHHHHcC
Q 004256 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR--------------GGCQGHRAELYAARVAKCLAALEG 386 (765)
Q Consensus 321 ~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~--------------~g~~s~Ra~i~llr~A~a~A~l~g 386 (765)
.......+.+...+..++...-++.+++++.++|++++.. ....|.|+.+.++|+|+++|+++|
T Consensus 390 --~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~g 467 (506)
T 3f8t_A 390 --DTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRL 467 (506)
T ss_dssp ------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred --cCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcC
Confidence 0111222334444444442223678999999888876432 113488999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhcC
Q 004256 387 REKVNVDDLKKAVELVIL 404 (765)
Q Consensus 387 r~~Vt~edv~~A~~lvl~ 404 (765)
+++|+++|+++|+.++..
T Consensus 468 R~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 468 SDDVEPEDVDIAAELVDW 485 (506)
T ss_dssp CSEECHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 999999999999998653
No 8
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.92 E-value=2e-25 Score=252.99 Aligned_cols=258 Identities=19% Similarity=0.207 Sum_probs=185.6
Q ss_pred ceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccC
Q 004256 96 AVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAG 175 (765)
Q Consensus 96 ~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (765)
.|+|++.+++.+..++. ..+||||+||||||||++|++|+..+..
T Consensus 23 ~ivGq~~~i~~l~~al~--~~~~VLL~GpPGtGKT~LAraLa~~l~~--------------------------------- 67 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQN--------------------------------- 67 (500)
T ss_dssp TCSSCHHHHHHHHHHHH--HTCEEEEECCSSSSHHHHHHHGGGGBSS---------------------------------
T ss_pred hhHHHHHHHHHHHHHHh--cCCeeEeecCchHHHHHHHHHHHHHHhh---------------------------------
Confidence 48999999999877666 4589999999999999999999998752
Q ss_pred cccccccCCCeEeCCCCC-cccceeeecccccccccCCC-cccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCce
Q 004256 176 NLKTQIARSPFVQIPLGV-TEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVN 253 (765)
Q Consensus 176 ~~~~~~~~~~~v~l~~~~-~e~~L~G~~d~e~~~~~g~~-~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~ 253 (765)
..+|+.+.+.. +.++++|..+.......|.. .+..|.+ +..+|||||||+++++.+|+.|+.+|+++.
T Consensus 68 -------~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l--~~~~IL~IDEI~r~~~~~q~~LL~~lee~~- 137 (500)
T 3nbx_X 68 -------ARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYL--PEAEIVFLDEIWKAGPAILNTLLTAINERQ- 137 (500)
T ss_dssp -------CCEEEEECCTTCCHHHHHCCBC----------CBCCTTSG--GGCSEEEEESGGGCCHHHHHHHHHHHHSSE-
T ss_pred -------hhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccCC--CcceeeeHHhHhhhcHHHHHHHHHHHHHHh-
Confidence 34555555443 56788886543332222322 1334433 235689999999999999999999999998
Q ss_pred EEEeCCeeEEeeCceEEEEeecC--CCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcH
Q 004256 254 IVEREGISFKHPCKPLLIATYNP--EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDL 331 (765)
Q Consensus 254 ~v~r~G~~~~~p~~~~lIat~N~--~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~ 331 (765)
+...|.....|.+| +|+|||+ +++.++++|+|||.+.+.+..|..++++.+|+......... ........
T Consensus 138 -v~i~G~~~~~~~~~-iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~------~~~~~~~~ 209 (500)
T 3nbx_X 138 -FRNGAHVEKIPMRL-LVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDN------PVPDALQV 209 (500)
T ss_dssp -EECSSSEEECCCCE-EEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSC------CSCTTTSB
T ss_pred -ccCCCCcCCcchhh-hhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCC------CCCcccee
Confidence 55578888888887 4556674 45678899999998877777665556666666431100000 00000111
Q ss_pred HHHHHHHHhcccCCccCCHHHHHHHHHHHHh-------CCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcC
Q 004256 332 AKTQIILAREYLKDVAIGREQLKYLVMEALR-------GGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (765)
Q Consensus 332 ~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~-------~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~ 404 (765)
....+...+....++.+++++++++++++.. .++ |.|+.+.+++.|+++|+++|+++|+++||. ++..+|+
T Consensus 210 ~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~i-S~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL~ 287 (500)
T 3nbx_X 210 TDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYV-SDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCLW 287 (500)
T ss_dssp CHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCC-CHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTSC
T ss_pred cHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCcc-chhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhhh
Confidence 2234455556667899999999999998842 244 889999999999999999999999999999 9999999
Q ss_pred CCcC
Q 004256 405 PRSI 408 (765)
Q Consensus 405 hR~~ 408 (765)
||..
T Consensus 288 hr~~ 291 (500)
T 3nbx_X 288 YDAQ 291 (500)
T ss_dssp SSHH
T ss_pred cCch
Confidence 9864
No 9
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.92 E-value=3.6e-25 Score=257.36 Aligned_cols=259 Identities=20% Similarity=0.194 Sum_probs=187.6
Q ss_pred CceeechHHHHHHHHhhhcCC-----------CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccc
Q 004256 95 AAVVGQDAIKTALLLGAIDRE-----------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (765)
Q Consensus 95 ~~ivG~~~~~~aL~l~~~~~~-----------~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 163 (765)
..|+|++.+++++.++.+... ..+|||+||||||||++|+++|..+++.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~-------------------- 354 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRA-------------------- 354 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCE--------------------
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCc--------------------
Confidence 369999999999976665321 1189999999999999999999998751
Q ss_pred cccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
+.......+...+.+... ...++|.....+|.+..|++||||||||+.+++..|+.
T Consensus 355 ----------------------~~~~~~~~~~~~l~~~~~--~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~ 410 (595)
T 3f9v_A 355 ----------------------VYTTGKGSTAAGLTAAVV--REKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVA 410 (595)
T ss_dssp ----------------------ECCCTTCSTTTTSEEECS--SGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHH
T ss_pred ----------------------eecCCCccccccccceee--eccccccccccCCeeEecCCCcEEeehhhhCCHhHhhh
Confidence 111111233344555432 33456777888999999999999999999999999999
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC------------CcchHHHhhhhcceeecCCCCHhhHHHHHHHH
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg------------~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~ 311 (765)
|+++|+++.+.+.+.|.....+.++++|||+||..| .++++|++||++++.+...++.+ ...|...+
T Consensus 411 Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~i 489 (595)
T 3f9v_A 411 IHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYI 489 (595)
T ss_dssp HHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHH
T ss_pred hHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHH
Confidence 999999999988999999999999999999999765 67889999998765444333444 44444332
Q ss_pred HHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhC-----------CCCCCChHHHHHHHHHH
Q 004256 312 TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG-----------GCQGHRAELYAARVAKC 380 (765)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~-----------g~~s~Ra~i~llr~A~a 380 (765)
...............+.+...+..++... ...+++++.+.|.++.... ...|.|.++.+++.|++
T Consensus 490 ---l~~~~~~~~~~~l~~~~l~~~i~~ar~~~-~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a 565 (595)
T 3f9v_A 490 ---LDVHSGKSTKNIIDIDTLRKYIAYARKYV-TPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEA 565 (595)
T ss_dssp ---HTTTCCCSSSSTTCCTTTHHHHHHHHHHH-CCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHH
T ss_pred ---HHHhhccccccCCCHHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHH
Confidence 22111000011112222333333333221 1267888888888886541 23489999999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHh
Q 004256 381 LAALEGREKVNVDDLKKAVELV 402 (765)
Q Consensus 381 ~A~l~gr~~Vt~edv~~A~~lv 402 (765)
+|.+++++.|+.+|+.+|+.++
T Consensus 566 ~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 566 YAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp HHHTTSSCCSSHHHHHHHHHHH
T ss_pred HHHHhCcCCCCHHHHHHHHHHH
Confidence 9999999999999999999875
No 10
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.85 E-value=1e-21 Score=229.68 Aligned_cols=287 Identities=21% Similarity=0.262 Sum_probs=188.7
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccc-ccc--
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE-DGL-- 165 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~-- 165 (765)
.++..|++++|++.+++.+..+.. ...+++|+||+|||||++|++|+.++++.. ...+.+.|++.+...+. ..+
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~--~g~~vll~Gp~GtGKTtlar~ia~~l~~~~-~~~~~~~~~~~~~~~p~i~~~p~ 111 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAAN--QKRHVLLIGEPGTGKSMLGQAMAELLPTET-LEDILVFPNPEDENMPRIKTVPA 111 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHH--TTCCEEEECCTTSSHHHHHHHHHHTSCCSS-CEEEEEECCTTCTTSCEEEEEET
T ss_pred ccccccceEECchhhHhhcccccc--CCCEEEEEeCCCCCHHHHHHHHhccCCccc-CCeEEEeCCcccccCCcEEEEec
Confidence 345567889999999998865554 347999999999999999999999987522 22334455544332211 000
Q ss_pred -ccc--c-------------------c--ccc-cCc--ccccccCCCeEeCCCCCcccceeeeccccc----ccccCCC-
Q 004256 166 -DEK--A-------------------E--YDT-AGN--LKTQIARSPFVQIPLGVTEDRLIGSVDVEE----SVKTGTT- 213 (765)
Q Consensus 166 -~~~--~-------------------~--~~~-~~~--~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~----~~~~g~~- 213 (765)
... + . .+. .+. .+......|++.. ...+...|||.++... ++++|..
T Consensus 112 g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~~~~~~~~g~~~~g~~~ 190 (604)
T 3k1j_A 112 CQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDVRHDPFQSGGLGTPAHE 190 (604)
T ss_dssp THHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEECCCCC----CCCCGGG
T ss_pred chHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceEEechhhcCCccccccc
Confidence 000 0 0 000 000 0000123344443 2345667888764322 2333322
Q ss_pred cccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCe----------eEEeeCceEEEEeecCCC-CCcc
Q 004256 214 VFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGI----------SFKHPCKPLLIATYNPEE-GVVR 282 (765)
Q Consensus 214 ~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~----------~~~~p~~~~lIat~N~~e-g~l~ 282 (765)
...+|.+..|++|+||||||+.|++.+|+.|+++|+++. +...|. ....|.+|+||+++|++. ..|+
T Consensus 191 ~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~--~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~ 268 (604)
T 3k1j_A 191 RVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKK--FPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMH 268 (604)
T ss_dssp GEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSE--ECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSC
T ss_pred cccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCc--EEecccccccccccCCCCccceeEEEEEecCHHHHhhcC
Confidence 347899999999999999999999999999999999998 555555 567889999999999753 4699
Q ss_pred hHHHhhhhcc-eeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHH
Q 004256 283 EHLLDRIAIN-LSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEAL 361 (765)
Q Consensus 283 ~~L~dRf~~~-v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~ 361 (765)
++|++||.++ +.+.++...++ +.....+|+...+... .. ......+++++++.|++++.
T Consensus 269 ~~l~~R~~v~~i~i~l~~~~~~---~~~~~~~~l~~~~~~~---------------~~--~~~~~~ls~eAl~~Li~~~~ 328 (604)
T 3k1j_A 269 PALRSRIRGYGYEVYMRTTMPD---TIENRRKLVQFVAQEV---------------KR--DGKIPHFTKEAVEEIVREAQ 328 (604)
T ss_dssp HHHHHHHHHHSEEEECCSEEEC---CHHHHHHHHHHHHHHH---------------HH--HCSSCCBBHHHHHHHHHHHH
T ss_pred HHHHHHhhccceEeeccccccC---CHHHHHHHHHHHHHHH---------------hh--ccCcccCCHHHHHHHHHHHh
Confidence 9999999842 23443333332 2223333332221111 00 01234789999999998876
Q ss_pred hC-CCC-----CCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 004256 362 RG-GCQ-----GHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (765)
Q Consensus 362 ~~-g~~-----s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~l 401 (765)
+. |.. +.|.+..+++.|.++|..++++.|+.+||.+|+..
T Consensus 329 r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 329 KRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 53 321 47899999999999999999999999999999964
No 11
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=99.85 E-value=3.2e-24 Score=213.22 Aligned_cols=186 Identities=38% Similarity=0.581 Sum_probs=147.1
Q ss_pred ccCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCCh
Q 004256 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSP 637 (765)
Q Consensus 558 ~~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~gG~T~ 637 (765)
++.+.+++||||+||||.++|+..+|.++..++...+.++++|+||.|++..+.+++|++.+...+...|+.+.++|+|+
T Consensus 2 ~~~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~T~ 81 (189)
T 2x31_A 2 EMSDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQVLLQPSRSLTQTKRQLQGLPGGGGTP 81 (189)
T ss_dssp CSSCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCBCTTTCSCHHHHHHHHHHCCCCBCCC
T ss_pred CCCCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceEecCCCCCHHHHHHHHhcCCCCCCCC
Confidence 45689999999999999889999999999999976668999999999997447889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEEE
Q 004256 638 LAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLVI 717 (765)
Q Consensus 638 l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vi 717 (765)
+..||..|++++.....+ ..+..|||||||.+|.+.+.. + ......+++..+++.+++.||.+++|
T Consensus 82 ~~~al~~a~~~l~~~~~~--~~~~~ivliTDG~~~~~~~~~---~---------~~~~~~~~~~~~~~~~~~~gi~v~~i 147 (189)
T 2x31_A 82 LASGMEMAMVTAKQARSR--GMTPTIALLTDGRGNIALDGT---A---------NRELAGEQATKVARAIRASGMPAVII 147 (189)
T ss_dssp CHHHHHHHHHHHHTCTTT--CSSEEEEECCBSCCSSCCTHH---H---------HHGGGTCCCEEEEECTGGGGSCCTHH
T ss_pred HHHHHHHHHHHHHhccCC--CCceEEEEECCCCCCCCCCcc---c---------cccchhHHHHHHHHHHHHcCCeEEEE
Confidence 999999999998764332 235689999999998764210 0 00000011233445567788999999
Q ss_pred eCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHHHH
Q 004256 718 DTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDAL 759 (765)
Q Consensus 718 g~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~~~ 759 (765)
+++.. +...|++||..+||.|+++++.+.+.+.+++++++
T Consensus 148 g~g~~--~~~~L~~iA~~~~G~~~~~~~~~~~~~~~~~~~~~ 187 (189)
T 2x31_A 148 DTAMR--PNPALVDLARTMDAHYIALPRATAHKMADVLGAAL 187 (189)
T ss_dssp HHHHS--SCSSSCSTTTEEEESSTTTHHHHHHHHHHHHHHCC
T ss_pred ecCCC--CHHHHHHHHHhcCCeEEECCCcchHHHHHHHHHhh
Confidence 98865 46689999999999999998887788888877653
No 12
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=8.1e-20 Score=185.43 Aligned_cols=158 Identities=27% Similarity=0.377 Sum_probs=133.1
Q ss_pred ccCCceEEEEEeCCCCCCc-----hhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCC
Q 004256 558 RKAGALVIFVVDASGSMAL-----NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPC 632 (765)
Q Consensus 558 ~~~~~~vv~vvD~SgSM~~-----~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~ 632 (765)
.+.+.+++||||+||||.+ +|+..+|.++..++.. + ++++|+||.|++. +.+++|++.+...+...|+.+.+
T Consensus 8 ~~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~-~-~~~~v~lv~F~~~-~~~~~~~~~~~~~~~~~l~~l~~ 84 (218)
T 3ibs_A 8 KRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDE-L-DNDKVGMIVFAGD-AFTQLPITSDYISAKMFLESISP 84 (218)
T ss_dssp --CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHT-C-SSCEEEEEEESSS-EEEEEEEESCHHHHHHHHHTCCG
T ss_pred ccCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHh-C-CCCeEEEEEECCC-ceEeCCCCCCHHHHHHHHHhcCc
Confidence 4568999999999999975 4999999999999873 3 5899999999999 89999999999999999999976
Q ss_pred ----CCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHH
Q 004256 633 ----GGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIY 708 (765)
Q Consensus 633 ----gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 708 (765)
+|+|++..||..|.+.+... .....+|||||||.+|.+ ....+++.++
T Consensus 85 ~~~~~g~T~l~~al~~a~~~l~~~----~~~~~~ivllTDG~~~~~------------------------~~~~~~~~~~ 136 (218)
T 3ibs_A 85 SLISKQGTAIGEAINLATRSFTPQ----EGVGRAIIVITDGENHEG------------------------GAVEAAKAAA 136 (218)
T ss_dssp GGCCSCSCCHHHHHHHHHTTSCSC----SSCCEEEEEEECCTTCCS------------------------CHHHHHHHHH
T ss_pred ccCCCCCCcHHHHHHHHHHHHhhC----CCCCcEEEEEcCCCCCCC------------------------cHHHHHHHHH
Confidence 69999999999998876543 123558999999998753 1356677788
Q ss_pred hCCCEEEEEeCCCC------------------------CCCHHHHHHHHHHcCCeEEEcCCC
Q 004256 709 KAGMSLLVIDTENK------------------------FVSTGFAKEIARVAQGKYYYLPNA 746 (765)
Q Consensus 709 ~~gi~~~vig~~~~------------------------~~~~~~l~~LA~~~gG~y~~~~~~ 746 (765)
+.||.+++|++|.. .++...|++||..+||.|+++.+.
T Consensus 137 ~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~~ 198 (218)
T 3ibs_A 137 EKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNS 198 (218)
T ss_dssp TTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSS
T ss_pred hcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCCC
Confidence 99999999999863 457889999999999999999864
No 13
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.80 E-value=1.2e-18 Score=175.19 Aligned_cols=175 Identities=7% Similarity=0.102 Sum_probs=136.4
Q ss_pred CceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhc--CCCCeEEEEEeeCCCcEEEcCCC--ccHHHHHHHhhcCCCC-C-
Q 004256 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPS--RSIAMARKRLERLPCG-G- 634 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~--~~~d~v~lv~F~~~~a~~~~p~t--~~~~~~~~~l~~l~~g-G- 634 (765)
+.+++||||.||||.+.++..+|.++..++.... ..+++|+||.|++. +.+.++++ .+...+...|+.++.. |
T Consensus 13 ~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~-~~~~~~l~~~~~~~~~~~~i~~l~~~gg~ 91 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDG-SHAYIGLKDRKRPSELRRIASQVKYAGSQ 91 (202)
T ss_dssp CEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSS-EEEEECTTCCCCHHHHHHHHHTCCCCCBS
T ss_pred cccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCC-ceEEEecCCCCCHHHHHHHHHhCcCCCCC
Confidence 6899999999999998899999999999987432 35789999999998 88889988 5888999999999853 4
Q ss_pred CChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEE
Q 004256 635 GSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSL 714 (765)
Q Consensus 635 ~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~ 714 (765)
+|+++.||..|.+.+.... .......+|||+|||.++.+.. +++...++.+++.||.+
T Consensus 92 ~T~~~~aL~~a~~~~~~~~-~r~~~~~~iillTDG~~~~~~~---------------------~~~~~~a~~l~~~gi~i 149 (202)
T 1ijb_A 92 VASTSEVLKYTLFQIFSKI-DRPEASRIALLLMASQEPQRMS---------------------RNFVRYVQGLKKKKVIV 149 (202)
T ss_dssp CCCHHHHHHHHHHHTSSSC-SCTTSEEEEEEEECCCCCGGGC---------------------TTHHHHHHHHHHTTEEE
T ss_pred cCcHHHHHHHHHHHHhccC-CCCCCCeEEEEEccCCCCccch---------------------HHHHHHHHHHHHCCCEE
Confidence 4999999999986543211 1122356899999999874210 24567778888999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHH-cCCeEEEcCCCChHHHHHHHHHHHHh
Q 004256 715 LVIDTENKFVSTGFAKEIARV-AQGKYYYLPNASDAVISATTKDALSA 761 (765)
Q Consensus 715 ~vig~~~~~~~~~~l~~LA~~-~gG~y~~~~~~~~~~l~~~~~~~~~~ 761 (765)
++||+|... +...|+.||.. +++.+|.+++.+ .|..++......
T Consensus 150 ~~igvG~~~-~~~~L~~iA~~~~~~~~~~~~~~~--~L~~~~~~i~~~ 194 (202)
T 1ijb_A 150 IPVGIGPHA-NLKQIRLIEKQAPENKAFVLSSVD--ELEQQRDEIVSY 194 (202)
T ss_dssp EEEEESTTS-CHHHHHHHHHHCTTCCCEEESSGG--GHHHHHHHHHHH
T ss_pred EEEecCCcC-CHHHHHHHhCCCCcccEEEeCCHH--HHHHHHHHHHHH
Confidence 999999743 78999999997 478888888543 455666655543
No 14
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.80 E-value=9.5e-19 Score=197.21 Aligned_cols=174 Identities=18% Similarity=0.210 Sum_probs=141.5
Q ss_pred cCCceEEEEEeCCCCCC--chhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCC--------ccHHHHHHHhh
Q 004256 559 KAGALVIFVVDASGSMA--LNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPS--------RSIAMARKRLE 628 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~--~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t--------~~~~~~~~~l~ 628 (765)
+++.+++||||+||||. ++||..+|.++..++. .+.++|+|+||.|++. +..++|++ .+...+...|+
T Consensus 75 ~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~-~L~~~drv~lV~Fs~~-a~~~~p~t~~l~~~~~~~~~~l~~~I~ 152 (464)
T 4fx5_A 75 GSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAID-TLTDGAFFAVVAGTEG-ARVVYPTGGQLLRADYQSRAAAKEAVG 152 (464)
T ss_dssp -CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHH-HSCTTCEEEEEEESSS-EEEEESSSSSCEECSHHHHHHHHHHHH
T ss_pred CCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHH-hCCCCCEEEEEEEcCc-eEEEecCCcccccCCHHHHHHHHHHHH
Confidence 45799999999999999 8999999999998886 6789999999999999 89999986 58889999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHH
Q 004256 629 RLPCGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIY 708 (765)
Q Consensus 629 ~l~~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 708 (765)
.|.++|+|++..||..|++++.... .....|||||||.+|.+.. ..+. .+....
T Consensus 153 ~L~~~GgT~l~~aL~~A~~~l~~~~----~~~~~IILLTDG~~~~~~~---------------------~~l~-~~~~a~ 206 (464)
T 4fx5_A 153 RLHANGGTAMGRWLAQAGRIFDTAP----SAIKHAILLTDGKDESETP---------------------ADLA-RAIQSS 206 (464)
T ss_dssp TCCCCSCCCHHHHHHHHHHHHTTCT----TSEEEEEEEESSCCTTSCH---------------------HHHH-HHHHHH
T ss_pred cCCCCCCCcHHHHHHHHHHHHhcCC----CCCCEEEEEcCCCCCCCCh---------------------HHHH-HHHHHh
Confidence 9999999999999999999987521 2345899999999874210 1222 222234
Q ss_pred hCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHHHHHhhh
Q 004256 709 KAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDALSALK 763 (765)
Q Consensus 709 ~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~~~~~~~ 763 (765)
..++.+++||+|.+. +..+|++||..+||.|+++.+. +.|..++...+..+.
T Consensus 207 ~~~i~i~tiGiG~~~-d~~~L~~IA~~tgG~~~~v~d~--~~L~~~f~~i~~~~~ 258 (464)
T 4fx5_A 207 IGNFTADCRGIGEDW-EPKELRKIADALLGTVGIIRDP--ATLAEDFREMTAKSM 258 (464)
T ss_dssp TTTCEEEEEEESSSS-CHHHHHHHHHHTTCCEEEESSG--GGHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEeCCcc-CHHHHHHHHHhCCCEEEEcCCH--HHHHHHHHHHHHHhh
Confidence 578999999999754 8899999999999999999854 457777777766554
No 15
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.80 E-value=4e-20 Score=175.94 Aligned_cols=136 Identities=16% Similarity=0.115 Sum_probs=109.3
Q ss_pred ceeechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccc
Q 004256 96 AVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDT 173 (765)
Q Consensus 96 ~ivG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (765)
.|+|+++.++.+ .+..++....+|||+||+|||||++|++||..+++
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~------------------------------- 50 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN------------------------------- 50 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTT-------------------------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCc-------------------------------
Confidence 489999988887 45556677889999999999999999999998764
Q ss_pred cCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCce
Q 004256 174 AGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVN 253 (765)
Q Consensus 174 ~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~ 253 (765)
...||+ +++....+. ....|++..+++|+||||||+.|++..|..|+.+|...
T Consensus 51 --------~~~~~v-~~~~~~~~~----------------~~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~-- 103 (145)
T 3n70_A 51 --------AQGEFV-YRELTPDNA----------------PQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQE-- 103 (145)
T ss_dssp --------TTSCCE-EEECCTTTS----------------SCHHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHSS--
T ss_pred --------cCCCEE-EECCCCCcc----------------hhhhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhhc--
Confidence 356777 766643322 12356788889999999999999999999999999543
Q ss_pred EEEeCCeeEEeeCceEEEEeecCC------CCCcchHHHhhhhcceeecCCCCH
Q 004256 254 IVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTF 301 (765)
Q Consensus 254 ~v~r~G~~~~~p~~~~lIat~N~~------eg~l~~~L~dRf~~~v~i~~p~~~ 301 (765)
+.++++|+|||.. ++.|+++||+||+.. .|.+||++
T Consensus 104 -----------~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~-~i~lPpLR 145 (145)
T 3n70_A 104 -----------HRPFRLIGIGDTSLVELAASNHIIAELYYCFAMT-QIACLPLT 145 (145)
T ss_dssp -----------SCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHH-EEECCCCC
T ss_pred -----------CCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCC-EEeCCCCC
Confidence 3467899999973 578999999999976 68889874
No 16
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.80 E-value=5.4e-19 Score=174.01 Aligned_cols=173 Identities=20% Similarity=0.188 Sum_probs=132.8
Q ss_pred CCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcC---CCCCCC
Q 004256 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERL---PCGGGS 636 (765)
Q Consensus 560 ~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l---~~gG~T 636 (765)
.+.+++||||.||||.++++. .+..+..++...+.++++|+||.|++. +...+|++.+...+...|+.+ .++|+|
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~-~~~~~~~~~~~~~~~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~g~T 82 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIE-IYNFVQQLAERFVSPEMRLSFIVFSSQ-ATIILPLTGDRGKISKGLEDLKRVSPVGET 82 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHH-HHHHHHHHHHHCCCTTEEEEEEEESSS-EEEEEEEECCHHHHHHHHHHHHTCCCCSCC
T ss_pred CceeEEEEEECCCCcccCHHH-HHHHHHHHHHHhcCCCceEEEEEeCCC-ceEEECCCCCHHHHHHHHHhcccCCCCCCc
Confidence 578999999999999875443 233444444444558999999999998 889999998888777777655 488999
Q ss_pred hhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEE
Q 004256 637 PLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLV 716 (765)
Q Consensus 637 ~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~v 716 (765)
++..||..|.+.+....... ...+|||+|||.+|.+ ........++.++..|+.+++
T Consensus 83 ~~~~al~~a~~~l~~~~~~~--~~~~iiliTDG~~~~~---------------------~~~~~~~~~~~~~~~~i~i~~ 139 (182)
T 1shu_X 83 YIHEGLKLANEQIQKAGGLK--TSSIIIALTDGKLDGL---------------------VPSYAEKEAKISRSLGASVYC 139 (182)
T ss_dssp CHHHHHHHHHHHHHHHTGGG--SCEEEEEEECCCCCTT---------------------HHHHHHHHHHHHHHTTCEEEE
T ss_pred hHHHHHHHHHHHHHhccCCC--CCeEEEEECCCCcCCC---------------------CchhHHHHHHHHHhCCCEEEE
Confidence 99999999999987653222 2458999999998731 113456677888899999999
Q ss_pred EeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHHHHHh
Q 004256 717 IDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDALSA 761 (765)
Q Consensus 717 ig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~~~~~ 761 (765)
||+|+ .+...|++||..+||.|+..++ ...|..++.+...+
T Consensus 140 igvg~--~~~~~L~~ia~~~~~~~~~~~~--~~~L~~~~~~i~~~ 180 (182)
T 1shu_X 140 VGVLD--FEQAQLERIADSKEQVFPVKGG--FQALKGIINSILAQ 180 (182)
T ss_dssp EECSS--CCHHHHHHHSSSGGGEEESSST--THHHHHHHHHHHHT
T ss_pred EeCCc--CCHHHHHHHhCCCCceEEccCC--HHHHHHHHHHHHhc
Confidence 99995 3788999999999888776643 45677887776654
No 17
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.79 E-value=1.4e-18 Score=176.77 Aligned_cols=178 Identities=12% Similarity=0.193 Sum_probs=128.5
Q ss_pred cCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhh--cCCCCeEEEEEeeCCCcEEEc----CCCccHHHHHHHhhcCCC
Q 004256 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLL----PPSRSIAMARKRLERLPC 632 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~--~~~~d~v~lv~F~~~~a~~~~----p~t~~~~~~~~~l~~l~~ 632 (765)
..+.+++||||.||||...++..+|.++..++... +...++|+||.|++. +...+ +.+.+...+...|+.+..
T Consensus 13 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~ 91 (223)
T 1q0p_A 13 SGSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATY-PKIWVKVSEADSSNADWVTKQLNEINY 91 (223)
T ss_dssp --CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSS-EEEEECTTSGGGGCHHHHHHHHHTCCT
T ss_pred CCceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCc-cceeeccccCCCCCHHHHHHHHHhccc
Confidence 35799999999999999888999999999997532 356799999999998 88888 444577889999999984
Q ss_pred -----CCCChhHHHHHHHHHHHHhhhccC----CCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHH
Q 004256 633 -----GGGSPLAHGLSMAVRVGLNAEKSG----DVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEV 703 (765)
Q Consensus 633 -----gG~T~l~~aL~~A~~~l~~~~~~~----~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (765)
+|+|+++.||..|.+.+....... .....+|||||||.+|.+.+ + ..+.+.
T Consensus 92 ~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~-----~---------------~~~~~~ 151 (223)
T 1q0p_A 92 EDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGD-----P---------------ITVIDE 151 (223)
T ss_dssp TSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSC-----T---------------HHHHHH
T ss_pred ccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCC-----h---------------HHHHHH
Confidence 799999999999999987432111 12356899999999986421 1 222232
Q ss_pred H----------HHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCC--eEEEcCCCChHHHHHHHHHHHH
Q 004256 704 A----------GKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQG--KYYYLPNASDAVISATTKDALS 760 (765)
Q Consensus 704 a----------~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG--~y~~~~~~~~~~l~~~~~~~~~ 760 (765)
+ +.+++.||.+++||+|.. ++...|++||..+|| .||.+++. +.|..++.+.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~i~i~~igvG~~-~~~~~L~~iA~~~~G~~~~~~~~~~--~~L~~~~~~i~~ 217 (223)
T 1q0p_A 152 IRDLLYIGKDRKNPREDYLDVYVFGVGPL-VNQVNINALASKKDNEQHVFKVKDM--ENLEDVFYQMID 217 (223)
T ss_dssp HHHHTTCSCBTTBCCGGGEEEEEEECSSC-CCHHHHHHHSCCCTTCCCEEETTC---------------
T ss_pred HHHHHhhhhhhhhcccCCcEEEEEEecCc-CCHHHHHHHhcCCCCCceEEEcCCH--HHHHHHHHHHhc
Confidence 2 223567899999999974 478999999999999 89998854 557777776654
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.78 E-value=6.8e-22 Score=224.29 Aligned_cols=283 Identities=16% Similarity=0.163 Sum_probs=170.6
Q ss_pred cccchhHHHHHHhcCCCcccccCCCCccccCCCCcc--H--HHHHHHHHHHHHHHHHHHHHhh-----------hcc--c
Q 004256 21 HLQQSCSVVSSLKLHPLLFSYSPPPFFKFRTRPKHH--R--FFHVRASSSNATLDSANGAVAA-----------ASE--D 83 (765)
Q Consensus 21 ~~~~~~~~~~~~~~g~~~~d~~~~p~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~-----------~~~--~ 83 (765)
++.+.++||++||.| ||||+.|||......+... . .....++++...+..++..+.. ... .
T Consensus 115 ~~~~~~~av~a~~~g--a~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 192 (489)
T 3hu3_A 115 HVLPIDDTVEGITGN--LFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKRE 192 (489)
T ss_dssp EEEEBGGGSSSCCSC--HHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEEEEEEEESSSEEEECTTCEEECCSSCBCHH
T ss_pred EEcCCCcccccccch--hHHHHhHHHHhhcCcccccCCEEEecCCCceEEEEEEeecCCCceEEcCCeEEEEccCccccc
Confidence 677899999999999 9999999998664432221 0 0000011111111111100000 000 0
Q ss_pred cccccCCCCCCCceeechHHHHHHH--Hhhh-----------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccc
Q 004256 84 QDSYGRQFFPLAAVVGQDAIKTALL--LGAI-----------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSI 150 (765)
Q Consensus 84 ~~~~~~~~~~f~~ivG~~~~~~aL~--l~~~-----------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~ 150 (765)
..........|.+|+|++..++.|. +... .+...+|||+||||||||++|++|+..+.
T Consensus 193 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--------- 263 (489)
T 3hu3_A 193 DEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--------- 263 (489)
T ss_dssp HHHHHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS---------
T ss_pred ccccccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC---------
Confidence 0000012356788999999999882 2221 34567899999999999999999998753
Q ss_pred cCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccC---Ce
Q 004256 151 ANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHR---GV 227 (765)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~---Gi 227 (765)
.+|+.+++....+.++|... ....+++..|.+ +|
T Consensus 264 ---------------------------------~~fv~vn~~~l~~~~~g~~~----------~~~~~~f~~A~~~~p~i 300 (489)
T 3hu3_A 264 ---------------------------------AFFFLINGPEIMSKLAGESE----------SNLRKAFEEAEKNAPAI 300 (489)
T ss_dssp ---------------------------------SEEEEEEHHHHHTSCTTHHH----------HHHHHHHHHHHHTCSEE
T ss_pred ---------------------------------CCEEEEEchHhhhhhcchhH----------HHHHHHHHHHHhcCCcE
Confidence 46666666554455555321 011234444443 49
Q ss_pred EeccccccCC-----------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhccee
Q 004256 228 LYIDEINLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLS 294 (765)
Q Consensus 228 L~lDEi~~L~-----------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~ 294 (765)
||||||+.|. ..+|+.|+.+|+... .+.+++||+|||. ...+.++|.. ||...+.
T Consensus 301 LfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-----------~~~~v~vIaaTn~-~~~Ld~al~r~gRf~~~i~ 368 (489)
T 3hu3_A 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATNR-PNSIDPALRRFGRFDREVD 368 (489)
T ss_dssp EEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-----------TTSCEEEEEEESC-GGGBCGGGGSTTSSCEEEE
T ss_pred EEecchhhhccccccccchHHHHHHHHHHHHhhccc-----------cCCceEEEEecCC-ccccCHHHhCCCcCceEEE
Confidence 9999997664 378999999998543 2347899999995 4567888987 8988888
Q ss_pred ecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHH
Q 004256 295 ADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYA 374 (765)
Q Consensus 295 i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~l 374 (765)
+.. |+.+.|.+|+.... .. .....++ .++.++ ......+.|.+..+
T Consensus 369 i~~-P~~~eR~~IL~~~~---~~----------------------~~l~~~~-----~l~~la---~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 369 IGI-PDATGRLEILQIHT---KN----------------------MKLADDV-----DLEQVA---NETHGHVGADLAAL 414 (489)
T ss_dssp CCC-CCHHHHHHHHHHHT---TT----------------------SCBCTTC-----CHHHHH---HTCTTCCHHHHHHH
T ss_pred eCC-CCHHHHHHHHHHHH---hc----------------------CCCcchh-----hHHHHH---HHccCCcHHHHHHH
Confidence 885 46666777765221 00 0000111 123333 23333355667777
Q ss_pred HHHHHHHHHHcCCC-----------------CCCHHHHHHHHHHhc
Q 004256 375 ARVAKCLAALEGRE-----------------KVNVDDLKKAVELVI 403 (765)
Q Consensus 375 lr~A~a~A~l~gr~-----------------~Vt~edv~~A~~lvl 403 (765)
++.|...|..++.. .|+.+|+..|+..+-
T Consensus 415 ~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ 460 (489)
T 3hu3_A 415 CSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSN 460 (489)
T ss_dssp HHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHH
T ss_pred HHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCC
Confidence 77777777665533 478899998887544
No 19
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.78 E-value=1.3e-18 Score=171.67 Aligned_cols=175 Identities=18% Similarity=0.189 Sum_probs=135.1
Q ss_pred CCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCC---CCCCC
Q 004256 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLP---CGGGS 636 (765)
Q Consensus 560 ~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~---~gG~T 636 (765)
.+.+++||||.||||.. .+...+.++..++...+.++++|+||.|++. +.+++|++.+...+...|+.+. ++|+|
T Consensus 6 ~~~div~vlD~SgSM~~-~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~-~~~~~~l~~~~~~~~~~i~~l~~~~~~g~T 83 (185)
T 3n2n_F 6 GGFDLYFILDKSGSVLH-HWNEIYYFVEQLAHKFISPQLRMSFIVFSTR-GTTLMKLTEDREQIRQGLEELQKVLPGGDT 83 (185)
T ss_dssp SEEEEEEEEECSGGGGG-GHHHHHHHHHHHHHHCCCTTEEEEEEEESSS-EEEEEEEECCHHHHHHHHHHHHTCCCCSCC
T ss_pred CCeeEEEEEeCCCChhh-hHHHHHHHHHHHHHHhCCCCcEEEEEEEecC-ceEEeccCCCHHHHHHHHHHHhhhcCCCCc
Confidence 46899999999999985 3556666677777666778999999999998 8999999998888888887764 68999
Q ss_pred hhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEE
Q 004256 637 PLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLV 716 (765)
Q Consensus 637 ~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~v 716 (765)
+++.||..|.+.+......+.....+|||+|||.++.+ ...+....++.+++.|+.+++
T Consensus 84 ~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~---------------------~~~~~~~~~~~~~~~gi~i~~ 142 (185)
T 3n2n_F 84 YMHEGFERASEQIYYENRQGYRTASVIIALTDGELHED---------------------LFFYSEREANRSRDLGAIVYA 142 (185)
T ss_dssp CHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHH---------------------HHHHHHHHHHHHHHTTEEEEE
T ss_pred cHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCC---------------------cccchHHHHHHHHHCCCEEEE
Confidence 99999999999875433322223568999999998631 122446788889999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHHHHHh
Q 004256 717 IDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDALSA 761 (765)
Q Consensus 717 ig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~~~~~ 761 (765)
||+|+ ++...|++||.. ++.+|.+.+ +.+.|..++......
T Consensus 143 igvg~--~~~~~L~~iA~~-~~~~~~~~~-~~~~L~~~~~~i~~~ 183 (185)
T 3n2n_F 143 VGVKD--FNETQLARIADS-KDHVFPVND-GFQALQGIIHSILKK 183 (185)
T ss_dssp EECSS--CCHHHHTTTSSS-GGGEEEHHH-HHHHHHHHHHHHHHT
T ss_pred EEecc--CCHHHHHHHhCC-CCCeEEecc-HHHHHHHHHHHHHHh
Confidence 99993 489999999965 466777653 145677777666543
No 20
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.77 E-value=2.2e-18 Score=186.83 Aligned_cols=220 Identities=18% Similarity=0.203 Sum_probs=152.4
Q ss_pred CCCCCCCceeechHHHHHHH--Hhhh---cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccc
Q 004256 89 RQFFPLAAVVGQDAIKTALL--LGAI---DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~--l~~~---~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 163 (765)
.++..|++|+|++.+++.+. +... +....+|||+||+|||||++|+++++.+.
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~---------------------- 80 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS---------------------- 80 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT----------------------
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC----------------------
Confidence 34567899999999998883 2222 34557899999999999999999998763
Q ss_pred cccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
.+|+.+.+.... -.|. +...+-..+++|+||||||+.++...|+.
T Consensus 81 --------------------~~~~~~~~~~~~--~~~~-------------~~~~~~~~~~~~vl~lDEi~~l~~~~~~~ 125 (338)
T 3pfi_A 81 --------------------ANIKTTAAPMIE--KSGD-------------LAAILTNLSEGDILFIDEIHRLSPAIEEV 125 (338)
T ss_dssp --------------------CCEEEEEGGGCC--SHHH-------------HHHHHHTCCTTCEEEEETGGGCCHHHHHH
T ss_pred --------------------CCeEEecchhcc--chhH-------------HHHHHHhccCCCEEEEechhhcCHHHHHH
Confidence 345554433211 0110 00011124678999999999999999999
Q ss_pred HHHHHHcCceEEEeCC------eeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHh
Q 004256 244 LLNVLTEGVNIVEREG------ISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER 317 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G------~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~ 317 (765)
|+.+|+++.+.+-..+ .....| ++++|++||. .+.++++|++||+..+.+. |++.+++.+|+.... .
T Consensus 126 Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~-~~~l~~~L~~R~~~~i~l~-~~~~~e~~~il~~~~---~- 198 (338)
T 3pfi_A 126 LYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTR-AGMLSNPLRDRFGMQFRLE-FYKDSELALILQKAA---L- 198 (338)
T ss_dssp HHHHHHTSCC---------CCCCCCCCC-CCEEEEEESC-GGGSCHHHHTTCSEEEECC-CCCHHHHHHHHHHHH---H-
T ss_pred HHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCC-ccccCHHHHhhcCEEeeCC-CcCHHHHHHHHHHHH---H-
Confidence 9999999874332111 111223 5899999995 5568999999998877777 455665555543211 0
Q ss_pred hHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 004256 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (765)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~ 397 (765)
. .++.+++++++.++..+ .. +.|....+++.+...|.+.+...|+.+++..
T Consensus 199 ---------------------~----~~~~~~~~~~~~l~~~~-~G---~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~ 249 (338)
T 3pfi_A 199 ---------------------K----LNKTCEEKAALEIAKRS-RS---TPRIALRLLKRVRDFADVNDEEIITEKRANE 249 (338)
T ss_dssp ---------------------H----TTCEECHHHHHHHHHTT-TT---CHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred ---------------------h----cCCCCCHHHHHHHHHHH-Cc---CHHHHHHHHHHHHHHHHhhcCCccCHHHHHH
Confidence 0 13567788877776622 22 4688999999998899999989999999999
Q ss_pred HHHH
Q 004256 398 AVEL 401 (765)
Q Consensus 398 A~~l 401 (765)
++..
T Consensus 250 ~~~~ 253 (338)
T 3pfi_A 250 ALNS 253 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 21
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=99.77 E-value=6.9e-18 Score=177.08 Aligned_cols=175 Identities=18% Similarity=0.167 Sum_probs=140.4
Q ss_pred cCCceEEEEEeCCCCCCchhH-HHHHHHHHHHHHhhc--CCCCeEEEEEeeCCCcEEEcCCCcc----HHHHHHHhhcC-
Q 004256 559 KAGALVIFVVDASGSMALNRM-QNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPSRS----IAMARKRLERL- 630 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~~rl-~~ak~a~~~ll~~~~--~~~d~v~lv~F~~~~a~~~~p~t~~----~~~~~~~l~~l- 630 (765)
..+.+|+||||.||||....+ ..+|.++..++.... ..+++|+||.|++. +.+++|++.. ...+...|+.|
T Consensus 16 ~~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~-~~~~~~l~~~~~~~~~~~~~~i~~l~ 94 (266)
T 4hqo_A 16 NEQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSY-TTELIRLGSGQSIDKRQALSKVTELR 94 (266)
T ss_dssp CCCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSS-EEEEECTTSHHHHCHHHHHHHHHHHH
T ss_pred CCceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCC-cceEEecCCCCccCHHHHHHHHHHhh
Confidence 357999999999999998777 588999999887543 37899999999999 8999999863 67888889888
Q ss_pred ---CCCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHH
Q 004256 631 ---PCGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKI 707 (765)
Q Consensus 631 ---~~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 707 (765)
.++|+|+++.||..|.+++.... .......+|||||||.+|.+ .++...++.+
T Consensus 95 ~~~~~~G~T~~~~AL~~a~~~l~~~~-~r~~~~~~iIllTDG~~~d~-----------------------~~~~~~a~~l 150 (266)
T 4hqo_A 95 KTYTPYGTTSMTAALDEVQKHLNDRV-NREKAIQLVILMTDGVPNSK-----------------------YRALEVANKL 150 (266)
T ss_dssp HHCCCCSCCCHHHHHHHHHHHHHTTC-SCTTSEEEEEEEECSCCSCH-----------------------HHHHHHHHHH
T ss_pred hccCCCCCCCHHHHHHHHHHHHhhcc-ccCCCCeEEEEEccCCCCCc-----------------------hHHHHHHHHH
Confidence 68999999999999988876531 11223568999999998721 4667888889
Q ss_pred HhCCCEEEEEeCCCCCCCHHHHHHHHHHc--C--CeEEEcCCCChHHHHHHHHHHHHh
Q 004256 708 YKAGMSLLVIDTENKFVSTGFAKEIARVA--Q--GKYYYLPNASDAVISATTKDALSA 761 (765)
Q Consensus 708 ~~~gi~~~vig~~~~~~~~~~l~~LA~~~--g--G~y~~~~~~~~~~l~~~~~~~~~~ 761 (765)
++.||.+++||+|.. ++..+|++||... + ..||.+. +.+.|..++......
T Consensus 151 ~~~gi~i~~iGiG~~-~~~~~L~~iA~~~~~~g~~~~~~~~--d~~~L~~i~~~l~~~ 205 (266)
T 4hqo_A 151 KQRNVRLAVIGIGQG-INHQFNRLIAGCRPREPNCKFYSYA--DWNEAVALIKPFIAK 205 (266)
T ss_dssp HHTTCEEEEEECSSS-CCHHHHHHHHTCCTTCSSCTTEECS--CHHHHHHHHHHHHCC
T ss_pred HHCCCEEEEEecCcc-cCHHHHHHhhCCCCCCCCCCeEEec--CHHHHHHHHHHHHhh
Confidence 999999999999984 4788999999875 3 3788776 456677777766543
No 22
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.75 E-value=1.4e-17 Score=165.21 Aligned_cols=162 Identities=17% Similarity=0.167 Sum_probs=129.5
Q ss_pred CCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhc--CCCCeEEEEEeeCCCcEEEcCC--CccHHHHHHHhhcCCC-CC
Q 004256 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPP--SRSIAMARKRLERLPC-GG 634 (765)
Q Consensus 560 ~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~--~~~d~v~lv~F~~~~a~~~~p~--t~~~~~~~~~l~~l~~-gG 634 (765)
.+.+++||||.||||.+++++.+|.++..++.... ..+++|+||.|++. +.+.+|+ +.+...+...|+.++. +|
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~~g 82 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSI-TTIDVPWNVVPEKAHLLSLVDVMQREGG 82 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSS-EEEEECTTCCCCHHHHHHHHHTCCCCCC
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCc-ceEEEecCCCCCHHHHHHHHHhCcCCCC
Confidence 46899999999999999999999999999987443 34589999999988 8888998 6799999999999984 89
Q ss_pred CChhHHHHHHHHHHHHhhhcc-CCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCE
Q 004256 635 GSPLAHGLSMAVRVGLNAEKS-GDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMS 713 (765)
Q Consensus 635 ~T~l~~aL~~A~~~l~~~~~~-~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~ 713 (765)
+|+++.||..|.+.+...... ......++||+|||.++.. ....++.+++.||.
T Consensus 83 ~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~-------------------------~~~~~~~~~~~gi~ 137 (189)
T 1atz_A 83 PSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDS-------------------------VDAAADAARSNRVT 137 (189)
T ss_dssp CCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSC-------------------------CHHHHHHHHHTTEE
T ss_pred cchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCch-------------------------HHHHHHHHHHCCCE
Confidence 999999999999987653211 1122346788999986521 14566777889999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCe-EEEcCCCCh
Q 004256 714 LLVIDTENKFVSTGFAKEIARVAQGK-YYYLPNASD 748 (765)
Q Consensus 714 ~~vig~~~~~~~~~~l~~LA~~~gG~-y~~~~~~~~ 748 (765)
+++||+|... +...|+.||...++. +|.+.+.++
T Consensus 138 v~~igvG~~~-~~~~L~~iA~~~~~~~~~~~~~~~~ 172 (189)
T 1atz_A 138 VFPIGIGDRY-DAAQLRILAGPAGDSNVVKLQRIED 172 (189)
T ss_dssp EEEEEESSSS-CHHHHHHHTGGGGGGGCEEESSTTH
T ss_pred EEEEEcCCcC-CHHHHHHHHCCCcccCEEEecChhh
Confidence 9999999754 789999999998764 566776654
No 23
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.5e-17 Score=172.30 Aligned_cols=159 Identities=16% Similarity=0.138 Sum_probs=134.3
Q ss_pred eEEEEEeCCCCCCc-----hhHHHHHHHHHHHHHhh--cCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCC
Q 004256 563 LVIFVVDASGSMAL-----NRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGG 635 (765)
Q Consensus 563 ~vv~vvD~SgSM~~-----~rl~~ak~a~~~ll~~~--~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~gG~ 635 (765)
.+|||||+|+||.. +||..+|.++..|+... ..+.|+||||+|.+....++.|+|.+...+...|+.+.++|+
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT~D~~~il~aL~~l~~~G~ 84 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQIEGK 84 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEESCHHHHHHHHTTCCCCSC
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCcchHHHHHHHhhhcCcCCC
Confidence 47999999999963 69999999998887643 357899999999998678889999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEE
Q 004256 636 SPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLL 715 (765)
Q Consensus 636 T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~ 715 (765)
|+++.||..|+..++...... .+..|||+|||..+.. ..++..+++++++.||.+.
T Consensus 85 T~l~~gL~~A~~aLk~~~~k~--~~~rIIlf~ds~~~~~----------------------~~~l~~lak~lkk~gI~v~ 140 (268)
T 4b4t_W 85 LHMATALQIAQLTLKHRQNKV--QHQRIVAFVCSPISDS----------------------RDELIRLAKTLKKNNVAVD 140 (268)
T ss_dssp CCHHHHHHHHHHHHHTCSCTT--SEEEEEEEECSCCSSC----------------------HHHHHHHHHHHHHHTEEEE
T ss_pred CChHHHHHHHHHHHHhcccCC--CceEEEEEECCCCCCC----------------------HHHHHHHHHHHHHcCCEEE
Confidence 999999999999988754433 3557889999876531 2678999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHcCCe------EEEcCC
Q 004256 716 VIDTENKFVSTGFAKEIARVAQGK------YYYLPN 745 (765)
Q Consensus 716 vig~~~~~~~~~~l~~LA~~~gG~------y~~~~~ 745 (765)
+|++|.+..+...|+.+++..+|. +..++.
T Consensus 141 vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v~~ 176 (268)
T 4b4t_W 141 IINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTP 176 (268)
T ss_dssp EEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEECC
T ss_pred EEEeCCCccchHHHHHHHHHhcCCCCCceeEEEeCC
Confidence 999997767889999999998763 555653
No 24
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=99.75 E-value=2e-18 Score=172.03 Aligned_cols=178 Identities=16% Similarity=0.193 Sum_probs=133.8
Q ss_pred CCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhhcCC-CCCCC
Q 004256 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLP-CGGGS 636 (765)
Q Consensus 560 ~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~--~~~~~~~~l~~l~-~gG~T 636 (765)
.+.+++||||.||||.+.++..+|.++..++......+++|+||.|++. +.+++|++. +...+...|+.++ .+|+|
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~~g~T 82 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEE-FRIHFTFKEFQNNPNPRSLVKPITQLLGRT 82 (194)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSS-EEEEECHHHHHHSCCHHHHHTTCCCCCSCB
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCC-ceEEEecCCcCCHHHHHHHHHhCcCCCCCc
Confidence 4689999999999999889999999999998755556789999999988 888999875 4456888899998 48999
Q ss_pred hhHHHHHHHHHHHHhhh-ccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEE
Q 004256 637 PLAHGLSMAVRVGLNAE-KSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLL 715 (765)
Q Consensus 637 ~l~~aL~~A~~~l~~~~-~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~ 715 (765)
+++.||..|.+.+.... ........+|||+|||.+|.. . .....+++.+++.||.++
T Consensus 83 ~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d---~-------------------~~~~~~~~~~~~~gi~v~ 140 (194)
T 1mf7_A 83 HTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGD---P-------------------LGYEDVIPEADREGVIRY 140 (194)
T ss_dssp CHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSC---S-------------------SCGGGTHHHHHHTTEEEE
T ss_pred hHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC---c-------------------hhhHHHHHHHHHCCCEEE
Confidence 99999999997553321 111223568999999998711 0 011234566788999999
Q ss_pred EEeCCCCCC---CHHHHHHHHHHc-CCeEEEcCCCChHHHHHHHHHHHHhh
Q 004256 716 VIDTENKFV---STGFAKEIARVA-QGKYYYLPNASDAVISATTKDALSAL 762 (765)
Q Consensus 716 vig~~~~~~---~~~~l~~LA~~~-gG~y~~~~~~~~~~l~~~~~~~~~~~ 762 (765)
+||+|...- +...|++||... ++.||.+.+. +.|..++......+
T Consensus 141 ~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~--~~l~~~~~~i~~~i 189 (194)
T 1mf7_A 141 VIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNF--EALKTIQNQLREKI 189 (194)
T ss_dssp EEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSG--GGGGGGHHHHHHHH
T ss_pred EEEecccccccccHHHHHHHhCCCCcccEEEeCCH--HHHHHHHHHHHHHH
Confidence 999987431 268899999885 5788888764 44556665555443
No 25
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.75 E-value=1.7e-18 Score=172.87 Aligned_cols=177 Identities=14% Similarity=0.114 Sum_probs=132.5
Q ss_pred CCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhhcCC-CCCCC
Q 004256 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLP-CGGGS 636 (765)
Q Consensus 560 ~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~--~~~~~~~~l~~l~-~gG~T 636 (765)
.+.+++||||.||||....+..++.++..++.....++++|+||.|++. +...+|++. +...+...|+.+. .+|+|
T Consensus 8 ~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~g~T 86 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNK-FQTHFTFEEFRRSSNPLSLLASVHQLQGFT 86 (198)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSS-EEEEECHHHHHHCSSGGGGGTTCCCCCSCB
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-ccEEEecCccCCHHHHHHHHhcCcCCCCCc
Confidence 4689999999999999877888888888887643378999999999999 888888864 2245667777776 68999
Q ss_pred hhHHHHHHHHHHH-HhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEE
Q 004256 637 PLAHGLSMAVRVG-LNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLL 715 (765)
Q Consensus 637 ~l~~aL~~A~~~l-~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~ 715 (765)
+++.||..|.+.+ ..........+.+|||+|||.+|.+.. ....+++.+++.|+.++
T Consensus 87 ~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~----------------------~~~~~~~~~~~~gi~i~ 144 (198)
T 1n3y_A 87 YTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSL----------------------DYKDVIPMADAAGIIRY 144 (198)
T ss_dssp CHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSS----------------------CHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcc----------------------cHHHHHHHHHHCCCEEE
Confidence 9999999999544 332111222356899999999883211 12455677788999999
Q ss_pred EEeCCCCC---CCHHHHHHHHHHcCCeE-EEcCCCChHHHHHHHHHHHHh
Q 004256 716 VIDTENKF---VSTGFAKEIARVAQGKY-YYLPNASDAVISATTKDALSA 761 (765)
Q Consensus 716 vig~~~~~---~~~~~l~~LA~~~gG~y-~~~~~~~~~~l~~~~~~~~~~ 761 (765)
+|++|... .+...|++||..+||.| |.+++. +.|..++......
T Consensus 145 ~igvG~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~--~~l~~~~~~i~~~ 192 (198)
T 1n3y_A 145 AIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDF--DALKDIQNQLKEK 192 (198)
T ss_dssp EEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSG--GGGGGGHHHHHHH
T ss_pred EEEccccccccccHHHHHHHHcCCCcccEEEeCCH--HHHHHHHHHHHhh
Confidence 99998743 25789999999999997 777653 4455565555443
No 26
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.75 E-value=1.6e-17 Score=166.58 Aligned_cols=174 Identities=15% Similarity=0.153 Sum_probs=131.1
Q ss_pred CceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhc--CCCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhhcCCC-CC-
Q 004256 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLPC-GG- 634 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~--~~~d~v~lv~F~~~~a~~~~p~t~--~~~~~~~~l~~l~~-gG- 634 (765)
+.+++||||.||||. .+..+|.++..++.... ..+++|+||.|++. +.+.+|++. +...+...|+.++. +|
T Consensus 6 ~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~~G~ 82 (200)
T 1v7p_C 6 LIDVVVVCDESNSIY--PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANN-PRVVFNLNTYKTKEEMIVATSQTSQYGGD 82 (200)
T ss_dssp CEEEEEEEECCTTCC--CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSS-EEEEECTTTCSSHHHHHHHHHHCCCCCCS
T ss_pred cccEEEEEECCCCcc--cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCC-ceEEEeCCCcCCHHHHHHHHHhhhccCCC
Confidence 689999999999998 38889999999887432 36899999999998 899999984 78889999999975 44
Q ss_pred CChhHHHHHHHHHHH-HhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCE
Q 004256 635 GSPLAHGLSMAVRVG-LNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMS 713 (765)
Q Consensus 635 ~T~l~~aL~~A~~~l-~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~ 713 (765)
+|+++.||..|.+.+ ............+|||+|||.+|.+ .....+++.+++.||.
T Consensus 83 ~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~-----------------------~~~~~~~~~~~~~gi~ 139 (200)
T 1v7p_C 83 LTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDG-----------------------SMLKAVIDQCNHDNIL 139 (200)
T ss_dssp CCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCG-----------------------GGHHHHHHHHHHTTEE
T ss_pred CCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCc-----------------------ccHHHHHHHHHHCCCE
Confidence 699999999999864 3221112233568999999998732 1234567778889999
Q ss_pred EEEEeCCC----CCCC----HHHHHHHHHHcCCeE-EEcCCCChHHHHHHHHHHHHhh
Q 004256 714 LLVIDTEN----KFVS----TGFAKEIARVAQGKY-YYLPNASDAVISATTKDALSAL 762 (765)
Q Consensus 714 ~~vig~~~----~~~~----~~~l~~LA~~~gG~y-~~~~~~~~~~l~~~~~~~~~~~ 762 (765)
+++|+++. +.++ ...|++||..+||.| |.+.+. ..|..+++.....+
T Consensus 140 i~~igvg~~~~~~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~--~~l~~i~~~i~~~i 195 (200)
T 1v7p_C 140 RFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDE--AALLEKAGTLGEQI 195 (200)
T ss_dssp EEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSS--GGGHHHHHHHHHHH
T ss_pred EEEEEecccccccccchhhHHHHHHHHhCCccHhcEEEcCCH--HHHHHHHHHHHhhh
Confidence 99999942 1234 467999999998876 566644 44666666655543
No 27
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.75 E-value=8e-18 Score=171.70 Aligned_cols=173 Identities=15% Similarity=0.176 Sum_probs=131.7
Q ss_pred CCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhc--CCCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhhcCCC-CC
Q 004256 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLPC-GG 634 (765)
Q Consensus 560 ~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~--~~~d~v~lv~F~~~~a~~~~p~t~--~~~~~~~~l~~l~~-gG 634 (765)
.+.+++||||.||||. .+..+|.++..++.... ..+++|+||.|++. +.+.+|++. +...+...|+.+.. ||
T Consensus 21 ~~~div~vlD~SgSM~--~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~gG 97 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIY--PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGEN-VTHEFNLNKYSSTEEVLVAANKIVQRGG 97 (223)
T ss_dssp -CEEEEEEEECSTTCC--CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSS-EEEEECTTTCCSHHHHHHHHTTCCCCCC
T ss_pred CcceEEEEEECCCChh--hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCC-ccEEEecCCCCCHHHHHHHHHhhhccCC
Confidence 3689999999999998 37889998888886432 47899999999988 888888863 67888899999875 44
Q ss_pred -CChhHHHHHHHHHHHHh-hhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCC
Q 004256 635 -GSPLAHGLSMAVRVGLN-AEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGM 712 (765)
Q Consensus 635 -~T~l~~aL~~A~~~l~~-~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi 712 (765)
+|+++.||..|.+.+.. ..........+|||||||.+|.+ .+...+++.+++.||
T Consensus 98 ~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~-----------------------~~~~~~~~~~~~~gi 154 (223)
T 2b2x_A 98 RQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDN-----------------------YRLKQVIQDCEDENI 154 (223)
T ss_dssp SSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTG-----------------------GGHHHHHHHHHTTTE
T ss_pred CCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC-----------------------ccHHHHHHHHHHCCC
Confidence 59999999999987432 11112233568999999998743 124566777889999
Q ss_pred EEEEEeCCCCCCC---------HHHHHHHHHH-cCCeEEEcCCCChHHHHHHHHHHHHh
Q 004256 713 SLLVIDTENKFVS---------TGFAKEIARV-AQGKYYYLPNASDAVISATTKDALSA 761 (765)
Q Consensus 713 ~~~vig~~~~~~~---------~~~l~~LA~~-~gG~y~~~~~~~~~~l~~~~~~~~~~ 761 (765)
.+++||+|... + ...|++||.. +||.||.+.+.+ .|..++......
T Consensus 155 ~v~~igvG~~~-~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~~~~--~L~~i~~~i~~~ 210 (223)
T 2b2x_A 155 QRFSIAILGHY-NRGNLSTEKFVEEIKSIASEPTEKHFFNVSDEL--ALVTIVKALGER 210 (223)
T ss_dssp EEEEEEECGGG-C---CCCHHHHHHHHTTSCSSGGGTEEEESSTT--GGGGGHHHHHTT
T ss_pred EEEEEEecCcc-ccccccchhHHHHHHHHhCCCchhcEEEeCCHH--HHHHHHHHHHHh
Confidence 99999998642 2 3789999998 899999998554 355565555443
No 28
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.74 E-value=4.4e-19 Score=168.32 Aligned_cols=132 Identities=19% Similarity=0.249 Sum_probs=103.2
Q ss_pred ceeechHHHHHH--HHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccc
Q 004256 96 AVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDT 173 (765)
Q Consensus 96 ~ivG~~~~~~aL--~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (765)
+++|+++.++.+ .+..+.....+|||+||+|||||++|++||..+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~--------------------------------- 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG--------------------------------- 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT---------------------------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC---------------------------------
Confidence 489999988887 444555677899999999999999999998754
Q ss_pred cCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCce
Q 004256 174 AGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVN 253 (765)
Q Consensus 174 ~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~ 253 (765)
. +|+.+++....+.+ ..|++..+++|+||||||+.++.+.|..|+++|+++.
T Consensus 52 ---------~-~~~~~~~~~~~~~~-----------------~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~- 103 (143)
T 3co5_A 52 ---------T-PWVSPARVEYLIDM-----------------PMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE- 103 (143)
T ss_dssp ---------S-CEECCSSTTHHHHC-----------------HHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT-
T ss_pred ---------C-CeEEechhhCChHh-----------------hhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC-
Confidence 2 67767665432221 2466778889999999999999999999999999763
Q ss_pred EEEeCCeeEEeeCceEEEEeecCCC-----CCcchHHHhhhhcceeecCCCCH
Q 004256 254 IVEREGISFKHPCKPLLIATYNPEE-----GVVREHLLDRIAINLSADLPMTF 301 (765)
Q Consensus 254 ~v~r~G~~~~~p~~~~lIat~N~~e-----g~l~~~L~dRf~~~v~i~~p~~~ 301 (765)
+.++++|+|+|... + |+++|++||... .|.+|+++
T Consensus 104 -----------~~~~~iI~~tn~~~~~~~~~-~~~~L~~rl~~~-~i~lPpLr 143 (143)
T 3co5_A 104 -----------RCRVRVIASCSYAAGSDGIS-CEEKLAGLFSES-VVRIPPLS 143 (143)
T ss_dssp -----------TTTCEEEEEEEECTTTC--C-HHHHHHHHSSSE-EEEECCCC
T ss_pred -----------CCCEEEEEecCCCHHHHHhC-ccHHHHHHhcCc-EEeCCCCC
Confidence 35688999999642 4 899999999886 68888874
No 29
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.74 E-value=3.5e-19 Score=195.40 Aligned_cols=239 Identities=18% Similarity=0.221 Sum_probs=147.1
Q ss_pred eeechHHHHHHHHhh---------------hcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcc
Q 004256 97 VVGQDAIKTALLLGA---------------IDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (765)
Q Consensus 97 ivG~~~~~~aL~l~~---------------~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (765)
|+||+.+++.+..+. +.....+|||+||||||||++|++||..+.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~-------------------- 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD-------------------- 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT--------------------
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC--------------------
Confidence 799999999884333 122457899999999999999999999863
Q ss_pred cccccccccccccCcccccccCCCeEeCCCCC-cccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHH-
Q 004256 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGV-TEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG- 239 (765)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~-~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~- 239 (765)
.+|+.+.+.. .+..++|.-. .....+.....++.+..+.+||||||||+.++..
T Consensus 77 ----------------------~~~~~~~~~~l~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~ 132 (363)
T 3hws_A 77 ----------------------VPFTMADATTLTEAGYVGEDV--ENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKS 132 (363)
T ss_dssp ----------------------CCEEEEEHHHHTTCHHHHHHH--THHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCS
T ss_pred ----------------------CCEEEechHHhcccccccccH--HHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccc
Confidence 3566554432 2233555310 1111111122355667778999999999999876
Q ss_pred -------------HHHHHHHHHHcCceEEEeCCeeEEeeC--------ceEEEEeecCCC---------CC---------
Q 004256 240 -------------ISNLLLNVLTEGVNIVEREGISFKHPC--------KPLLIATYNPEE---------GV--------- 280 (765)
Q Consensus 240 -------------~q~~Ll~~l~~~~~~v~r~G~~~~~p~--------~~~lIat~N~~e---------g~--------- 280 (765)
+|+.||++|+...+.+...|....... +..+|+++|... +.
T Consensus 133 ~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~ 212 (363)
T 3hws_A 133 DNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGAT 212 (363)
T ss_dssp SCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC-------
T ss_pred cccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCcccc
Confidence 999999999944333433343333223 344444444320 11
Q ss_pred --------------------------cchHHHhhhhcceeecCCCCHhhHHHHHHH-HHHHHHhhHHHhccccccCcHHH
Q 004256 281 --------------------------VREHLLDRIAINLSADLPMTFEDRVAAVGI-ATQFQERSNEVFKMVEEETDLAK 333 (765)
Q Consensus 281 --------------------------l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l-~~~~~~~~~~~~~~~~~~~~~~~ 333 (765)
|+++|++||+.++.+ .|++++++.+|+.+ ..++......
T Consensus 213 ~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~-~pl~~~~~~~I~~~~~~~l~~~~~~------------- 278 (363)
T 3hws_A 213 VKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATL-NELSEEALIQILKEPKNALTKQYQA------------- 278 (363)
T ss_dssp -----CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEEC-CCCCHHHHHHHHHSSTTCHHHHHHH-------------
T ss_pred ccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeec-CCCCHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 899999999998644 48899999999875 1112222111
Q ss_pred HHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcC--CC-----CCCHHHHHHH
Q 004256 334 TQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEG--RE-----KVNVDDLKKA 398 (765)
Q Consensus 334 ~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~g--r~-----~Vt~edv~~A 398 (765)
.+..+ -..+.++++++++|++.+...+. +.|.+.++++.+...+..+- .+ .|+.++|++.
T Consensus 279 --~~~~~--~~~l~~~~~a~~~L~~~~~~~~~-gaR~L~~~ie~~~~~~l~~~~~~~~~~~~~I~~~~v~~~ 345 (363)
T 3hws_A 279 --LFNLE--GVDLEFRDEALDAIAKKAMARKT-GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQ 345 (363)
T ss_dssp --HHHTT--TCEEEECHHHHHHHHHHHHHTTC-TTTTHHHHHHHHHHHHHHSTTTCCCSEEEECHHHHTTCC
T ss_pred --HHHhc--CceEEECHHHHHHHHHhhcCCcc-CchHHHHHHHHHHHHHHHhcccccCCceeEEcHHHHhCc
Confidence 11111 12467899999999987766655 67999998887776655443 21 3666666543
No 30
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.74 E-value=2.5e-17 Score=163.91 Aligned_cols=161 Identities=12% Similarity=0.192 Sum_probs=126.2
Q ss_pred ceEEEEEeCCCCCCc-----hhHHHHHHHHHHHHHhh--cCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCC
Q 004256 562 ALVIFVVDASGSMAL-----NRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGG 634 (765)
Q Consensus 562 ~~vv~vvD~SgSM~~-----~rl~~ak~a~~~ll~~~--~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~gG 634 (765)
..++|+||.|+||.. +|+..+|.++..|+... ..++|+||||+|+++.++++.|+|.+...+...|+.+.++|
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~d~~~i~~~L~~l~~~g 82 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVRG 82 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEESCHHHHHHHHTTCCCCS
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCCCHHHHHHHHHcCCCCC
Confidence 468999999999963 79999999888876643 36889999999999558999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEE
Q 004256 635 GSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSL 714 (765)
Q Consensus 635 ~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~ 714 (765)
+|++..||..|.+.+++...+. ....+|||++|+. +.. ..+...+++.+++.||++
T Consensus 83 ~t~l~~aL~~A~~~l~~~~~~~-~~~riiil~~~~~-~~~----------------------~~~~~~~a~~lk~~gi~v 138 (192)
T 2x5n_A 83 NAKFGDGIQIAQLALKHRENKI-QRQRIVAFVGSPI-VED----------------------EKNLIRLAKRMKKNNVAI 138 (192)
T ss_dssp CCCHHHHHHHHHHHHHTCSCTT-SEEEEEEEECSCC-SSC----------------------HHHHHHHHHHHHHTTEEE
T ss_pred CchHHHHHHHHHHHHHhccccC-CCceEEEEEECCC-CCC----------------------chhHHHHHHHHHHCCCEE
Confidence 9999999999999987643222 1223455665554 210 156788999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHc----CCeEEEcCCCC
Q 004256 715 LVIDTENKFVSTGFAKEIARVA----QGKYYYLPNAS 747 (765)
Q Consensus 715 ~vig~~~~~~~~~~l~~LA~~~----gG~y~~~~~~~ 747 (765)
++|++|....+.. |+.||+.. ++.|+.++...
T Consensus 139 ~~Ig~G~~~~~~~-l~~la~~~n~~~~s~~~~~~~~~ 174 (192)
T 2x5n_A 139 DIIHIGELQNESA-LQHFIDAANSSDSCHLVSIPPSP 174 (192)
T ss_dssp EEEEESCC---CH-HHHHHHHHCSTTCCEEEEECCCS
T ss_pred EEEEeCCCCccHH-HHHHHHhccCCCceEEEEecCcc
Confidence 9999997655667 99999994 35677676543
No 31
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.74 E-value=1.1e-17 Score=169.53 Aligned_cols=173 Identities=16% Similarity=0.185 Sum_probs=130.5
Q ss_pred CCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhc--CCCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhhcCCC-CC
Q 004256 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLPC-GG 634 (765)
Q Consensus 560 ~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~--~~~d~v~lv~F~~~~a~~~~p~t~--~~~~~~~~l~~l~~-gG 634 (765)
.+.+++||||.||||. .+..+|.++..++.... .++++|+||.|++. +.+.+|++. +...+...|+.+.. +|
T Consensus 6 ~~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~~G 82 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGEN-VTHEFNLNKYSSTEEVLVAAKKIVQRGG 82 (213)
T ss_dssp -CEEEEEEEECCTTCC--CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSS-EEEEECTTTCSSHHHHHHHHHTCCCCCC
T ss_pred CCccEEEEEECCCChh--hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCC-ccEEEeccccCCHHHHHHHHHhccCCCC
Confidence 3689999999999998 47888988888886332 47899999999998 888989863 67888889999875 44
Q ss_pred -CChhHHHHHHHHHHHHh-hhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCC
Q 004256 635 -GSPLAHGLSMAVRVGLN-AEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGM 712 (765)
Q Consensus 635 -~T~l~~aL~~A~~~l~~-~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi 712 (765)
+|+++.||..|.+.+.. ..........+|||+|||.+|.+ .+...+++.+++.||
T Consensus 83 ~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~-----------------------~~~~~~~~~~~~~gi 139 (213)
T 1pt6_A 83 RQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDN-----------------------HRLKKVIQDCEDENI 139 (213)
T ss_dssp SSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCS-----------------------HHHHHHHHHHHHTTE
T ss_pred CcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC-----------------------ccHHHHHHHHHHCCC
Confidence 59999999999987432 11112233568999999998743 234667778889999
Q ss_pred EEEEEeCCCCC----CC----HHHHHHHHHH-cCCeEEEcCCCChHHHHHHHHHHHH
Q 004256 713 SLLVIDTENKF----VS----TGFAKEIARV-AQGKYYYLPNASDAVISATTKDALS 760 (765)
Q Consensus 713 ~~~vig~~~~~----~~----~~~l~~LA~~-~gG~y~~~~~~~~~~l~~~~~~~~~ 760 (765)
.+++|++|... ++ ...|++||.. +||.||.+++. +.|..++.....
T Consensus 140 ~i~~igig~~~~~~~~~~~~~~~~L~~iA~~~~~g~~~~~~~~--~~l~~i~~~l~~ 194 (213)
T 1pt6_A 140 QRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDE--LALVTIVKTLGE 194 (213)
T ss_dssp EEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSG--GGGGGGHHHHHH
T ss_pred EEEEEEeccccccccccchhhHHHHHHHhCCCchhcEEEeCCH--HHHHHHHHHHHH
Confidence 99999998531 11 3689999998 78999999754 335555554443
No 32
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=99.74 E-value=1.9e-17 Score=175.07 Aligned_cols=171 Identities=15% Similarity=0.193 Sum_probs=133.7
Q ss_pred cCCceEEEEEeCCCCCCchhH-HHHHHHHHHHHHhhcCC---CCeEEEEEeeCCCcEEEcCCCc----cHHHHHHHhhcC
Q 004256 559 KAGALVIFVVDASGSMALNRM-QNAKGAALKLLAESYTC---RDQVSIIPFRGDSAEVLLPPSR----SIAMARKRLERL 630 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~~rl-~~ak~a~~~ll~~~~~~---~d~v~lv~F~~~~a~~~~p~t~----~~~~~~~~l~~l 630 (765)
..+.+|+||||.||||.+..+ ..+|.++..++.. +.. .++|+||.|++. +..+++++. +...+...|+.|
T Consensus 19 ~~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~-l~~~~~~~rvglv~Fs~~-~~~~~~l~~~~~~~~~~l~~~i~~l 96 (281)
T 4hqf_A 19 NDEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQ-LNLNDNAIHLYASVFSNN-AREIIRLHSDASKNKEKALIIIKSL 96 (281)
T ss_dssp CSCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTT-CCCCTTSEEEEEEEEETT-EEEEEEECSSCSSCHHHHHHHHHHH
T ss_pred CCceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHH-hccCCCCcEEEEEEcCCC-ceEEEEccccCccCHHHHHHHHHHH
Confidence 357999999999999997555 8899999888863 333 789999999999 888888775 377888888877
Q ss_pred C----CCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHH
Q 004256 631 P----CGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGK 706 (765)
Q Consensus 631 ~----~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 706 (765)
. .+|+|+++.||..|.+.+.....+ .....+|||||||.+|.+ .++...++.
T Consensus 97 ~~~~~~~G~T~~~~aL~~a~~~l~~~~~r-~~~~~~iillTDG~~~d~-----------------------~~~~~~~~~ 152 (281)
T 4hqf_A 97 LSTNLPYGKTSLTDALLQVRKHLNDRINR-ENANQLVVILTDGIPDSI-----------------------QDSLKESRK 152 (281)
T ss_dssp HHTTGGGCSCCHHHHHHHHHHHHHTSCCC-TTCEEEEEEEESSCCSCH-----------------------HHHHHHHHH
T ss_pred hhccCCCCCccHHHHHHHHHHHHHhccCC-CCCCEEEEEEecCCCCCc-----------------------HHHHHHHHH
Confidence 5 589999999999998887653221 223568999999998731 456778888
Q ss_pred HHhCCCEEEEEeCCCCCCCHHHHHHHHHH--cCC--eEEEcCCCChHHHHHHHHHH
Q 004256 707 IYKAGMSLLVIDTENKFVSTGFAKEIARV--AQG--KYYYLPNASDAVISATTKDA 758 (765)
Q Consensus 707 ~~~~gi~~~vig~~~~~~~~~~l~~LA~~--~gG--~y~~~~~~~~~~l~~~~~~~ 758 (765)
++..||.+++||+|.. ++..+|+.||.. +|| .||.+.+.+. +..+++..
T Consensus 153 l~~~gv~i~~igiG~~-~~~~~L~~iA~~~~~~g~~~~~~~~~~~~--L~~~~~~l 205 (281)
T 4hqf_A 153 LSDRGVKIAVFGIGQG-INVAFNRFLVGCHPSDGKCNLYADSAWEN--VKNVIGPF 205 (281)
T ss_dssp HHHTTCEEEEEEESSS-CCHHHHHHHTTSCSSSSCCTTEEEECGGG--HHHHHHHH
T ss_pred HHHCCCEEEEEeCCCc-cCHHHHHhhhCCCCCCCCCceEEecchhh--hhcccCCc
Confidence 9999999999999985 488999999987 455 7788776543 44444443
No 33
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.73 E-value=5.9e-18 Score=181.04 Aligned_cols=218 Identities=20% Similarity=0.170 Sum_probs=129.2
Q ss_pred ceeechHHHHHHHHh--hhc-----C--CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccc
Q 004256 96 AVVGQDAIKTALLLG--AID-----R--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (765)
Q Consensus 96 ~ivG~~~~~~aL~l~--~~~-----~--~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (765)
.|+|++.+++.+... ... + ..++|||+||+|||||++|++||..+.+
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~------------------------ 73 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD------------------------ 73 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS------------------------
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC------------------------
Confidence 489999998888322 211 1 1357999999999999999999998753
Q ss_pred ccccccccCcccccccCCCeEeCCCCC-----cccceeeecccccccccCCC--cccCCceeeccCCeEeccccccCCHH
Q 004256 167 EKAEYDTAGNLKTQIARSPFVQIPLGV-----TEDRLIGSVDVEESVKTGTT--VFQPGLLAEAHRGVLYIDEINLLDEG 239 (765)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~l~~~~-----~e~~L~G~~d~e~~~~~g~~--~~~~Gll~~A~~GiL~lDEi~~L~~~ 239 (765)
...+|+.+++.. ....++|...- ..|.. ....+.+..+.++|||||||+.+++.
T Consensus 74 ---------------~~~~~~~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~ 134 (311)
T 4fcw_A 74 ---------------TEEAMIRIDMTEYMEKHAVSRLIGAPPG----YVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPD 134 (311)
T ss_dssp ---------------CGGGEEEEEGGGCCSTTHHHHHHCCCTT----STTTTTCCHHHHHHHHCSSEEEEEETGGGSCHH
T ss_pred ---------------CCcceEEeecccccccccHHHhcCCCCc----cccccccchHHHHHHhCCCeEEEEeChhhcCHH
Confidence 123344333321 22344543210 00100 01122334456789999999999999
Q ss_pred HHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCC-------------------------CCCcchHHHhhhhccee
Q 004256 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-------------------------EGVVREHLLDRIAINLS 294 (765)
Q Consensus 240 ~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~-------------------------eg~l~~~L~dRf~~~v~ 294 (765)
+|+.|+++|+++.+. ........-.++++|+|+|.. .+.|+++|++||+..+.
T Consensus 135 ~~~~Ll~~le~~~~~--~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~ 212 (311)
T 4fcw_A 135 VFNILLQMLDDGRLT--DSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVV 212 (311)
T ss_dssp HHHHHHHHHHHSEEE--CTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEE
T ss_pred HHHHHHHHHhcCEEE--cCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEE
Confidence 999999999998743 221111112356799999972 45789999999988765
Q ss_pred ecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHH
Q 004256 295 ADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYA 374 (765)
Q Consensus 295 i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~l 374 (765)
+. |++.+...+ ++.+++......+.. ....+.++++++++|+.+++.... +.|.+..+
T Consensus 213 ~~-p~~~~~~~~---i~~~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~~~~~~~g-n~R~L~~~ 270 (311)
T 4fcw_A 213 FR-PLTKEQIRQ---IVEIQMSYLRARLAE-----------------KRISLELTEAAKDFLAERGYDPVF-GARPLRRV 270 (311)
T ss_dssp CC-CCCHHHHHH---HHHHHTHHHHHHHHT-----------------TTCEEEECHHHHHHHHHHSCBTTT-BTTTHHHH
T ss_pred eC-CCCHHHHHH---HHHHHHHHHHHHHHh-----------------CCcEEEeCHHHHHHHHHhCCCccC-CchhHHHH
Confidence 44 667555444 444555444332211 011245555555555554442111 34666655
Q ss_pred HHHHHH
Q 004256 375 ARVAKC 380 (765)
Q Consensus 375 lr~A~a 380 (765)
++.+..
T Consensus 271 i~~~~~ 276 (311)
T 4fcw_A 271 IQRELE 276 (311)
T ss_dssp HHHHTH
T ss_pred HHHHHH
Confidence 554443
No 34
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.73 E-value=5e-17 Score=159.87 Aligned_cols=146 Identities=14% Similarity=0.225 Sum_probs=112.8
Q ss_pred CceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhc--CCCCeEEEEEeeCCCcEEEcCCCc----cHHHHHHHhhcCC-CC
Q 004256 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPSR----SIAMARKRLERLP-CG 633 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~--~~~d~v~lv~F~~~~a~~~~p~t~----~~~~~~~~l~~l~-~g 633 (765)
+.+|+||||.||||...++..+|.++..++.... ...++|+||.|++. +...+|++. +...+...|+.++ .+
T Consensus 17 ~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~-~~~~~~l~~~~~~~~~~~~~~i~~l~~~~ 95 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTD-VHLQWDLQSPNAVDKQLAAHAVLDMPYKK 95 (178)
T ss_dssp CEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSS-EEEEECTTSGGGSCHHHHHHHHHHCCCCC
T ss_pred CeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCc-eEEEEeCCCCCccCHHHHHHHHHhCCCCC
Confidence 6899999999999998899999999999987433 34589999999999 888999986 7789999999998 78
Q ss_pred CCChhHHHHHHHHHHHHhhh-ccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCC
Q 004256 634 GGSPLAHGLSMAVRVGLNAE-KSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGM 712 (765)
Q Consensus 634 G~T~l~~aL~~A~~~l~~~~-~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi 712 (765)
|+|+++.||..|.+.+.... ........+|||+|||.+|.+ .++..+++.+++.||
T Consensus 96 g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~-----------------------~~~~~~~~~l~~~gi 152 (178)
T 2xgg_A 96 GSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSD-----------------------FRTVRAAKEIRELGG 152 (178)
T ss_dssp CCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHH-----------------------HHHSHHHHHHHHTTC
T ss_pred CCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCC-----------------------ccHHHHHHHHHHCCC
Confidence 99999999999999864321 111223568999999998732 245677888899999
Q ss_pred EEEEEeCCCCCCCHHHHHH
Q 004256 713 SLLVIDTENKFVSTGFAKE 731 (765)
Q Consensus 713 ~~~vig~~~~~~~~~~l~~ 731 (765)
.+++||+|.. ++..+|+.
T Consensus 153 ~v~~igvG~~-~~~~~l~~ 170 (178)
T 2xgg_A 153 IVTVLAVGHY-VAAALVPR 170 (178)
T ss_dssp EEEEEECC-----------
T ss_pred EEEEEEcCCc-CCHHHHhc
Confidence 9999999974 35555543
No 35
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.72 E-value=4.9e-18 Score=187.15 Aligned_cols=247 Identities=19% Similarity=0.222 Sum_probs=143.1
Q ss_pred ceeechHHHHHHHHhh------------------------------hcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcch
Q 004256 96 AVVGQDAIKTALLLGA------------------------------IDREIGGIAISGRRGTAKTVMARGLHAILPPIEV 145 (765)
Q Consensus 96 ~ivG~~~~~~aL~l~~------------------------------~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~ 145 (765)
.|+||+.++++|..+. +.....+|||+||||||||++|++|++.+.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~---- 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD---- 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC----
Confidence 4899999999884333 122457899999999999999999999874
Q ss_pred hcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCC-cccceeeecccccccccCCCcccCCceeecc
Q 004256 146 VVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGV-TEDRLIGSVDVEESVKTGTTVFQPGLLAEAH 224 (765)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~-~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~ 224 (765)
.+|+.+++.. ++..++|.- . .....+......|.+..+.
T Consensus 98 --------------------------------------~~~~~~~~~~~~~~~~~g~~-~-~~~~~~~~~~~~~~~~~~~ 137 (376)
T 1um8_A 98 --------------------------------------IPIAISDATSLTEAGYVGED-V-ENILTRLLQASDWNVQKAQ 137 (376)
T ss_dssp --------------------------------------CCEEEEEGGGCC---------C-THHHHHHHHHTTTCHHHHT
T ss_pred --------------------------------------CCEEEecchhhhhcCcCCcc-H-HHHHHHHHhhccchhhhcC
Confidence 2344333322 112334421 0 0111111112345566778
Q ss_pred CCeEeccccccCCHH--------------HHHHHHHHHHcCceEEEeCCeeEEeeC--------ceEEEEeecCC-----
Q 004256 225 RGVLYIDEINLLDEG--------------ISNLLLNVLTEGVNIVEREGISFKHPC--------KPLLIATYNPE----- 277 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~--------------~q~~Ll~~l~~~~~~v~r~G~~~~~p~--------~~~lIat~N~~----- 277 (765)
+||||||||+.++.. +|+.|+.+|+.+.+.+.+.|.....+. ++++|+++|.+
T Consensus 138 ~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~ 217 (376)
T 1um8_A 138 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEI 217 (376)
T ss_dssp TSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHH
T ss_pred CeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHH
Confidence 999999999999988 999999999988766777776655444 44566665521
Q ss_pred -----------------------------------CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHH-HHHHHhhHHH
Q 004256 278 -----------------------------------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIA-TQFQERSNEV 321 (765)
Q Consensus 278 -----------------------------------eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~-~~~~~~~~~~ 321 (765)
...|+++|++||+.++.+. |...+...+|+... .++......
T Consensus 218 l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~-~l~~~~l~~i~~~~~~~~~~~~~~- 295 (376)
T 1um8_A 218 IKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLD-SISLEAMVDILQKPKNALIKQYQQ- 295 (376)
T ss_dssp TTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECC-CCCHHHHHHHHHSSTTCHHHHHHH-
T ss_pred HHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeecc-CCCHHHHHHHHhhhHHHHHHHHHH-
Confidence 2247899999998775554 44444333333210 012111111
Q ss_pred hccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCC------CCCCHHHH
Q 004256 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGR------EKVNVDDL 395 (765)
Q Consensus 322 ~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr------~~Vt~edv 395 (765)
.+..+ -.++.++++++++|++.+..... +.|.+..++..+...+..+.. -.|+.++|
T Consensus 296 --------------~~~~~--~~~~~~~~~a~~~l~~~~~~~~~-~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v 358 (376)
T 1um8_A 296 --------------LFKMD--EVDLIFEEEAIKEIAQLALERKT-GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 358 (376)
T ss_dssp --------------HHHTT--TCEEEECHHHHHHHHHHHHHTTC-TGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHH
T ss_pred --------------HHhhc--CceEEECHHHHHHHHHHhccccc-CcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHh
Confidence 11111 12478999999999999876333 569999998887776555322 25899999
Q ss_pred HHHHHHhcCC
Q 004256 396 KKAVELVILP 405 (765)
Q Consensus 396 ~~A~~lvl~h 405 (765)
..+.+-++..
T Consensus 359 ~~~~~~~~~~ 368 (376)
T 1um8_A 359 LKQAEPLIIA 368 (376)
T ss_dssp TTSSCCEEEC
T ss_pred cCCCCceeec
Confidence 7655544433
No 36
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.72 E-value=5.9e-17 Score=185.70 Aligned_cols=178 Identities=17% Similarity=0.180 Sum_probs=139.8
Q ss_pred cCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhh--cCCCCeEEEEEeeCCCcEEEcCCCc----cHHHHHHHhhcCCC
Q 004256 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPSR----SIAMARKRLERLPC 632 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~--~~~~d~v~lv~F~~~~a~~~~p~t~----~~~~~~~~l~~l~~ 632 (765)
..+.+++||||.||||.+.+++.+|.++..++... +..+++|+||+|++. +.+++|++. +...+...|+.++.
T Consensus 7 ~~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~-~~~~~~l~~~~~~~~~~~~~~l~~l~~ 85 (509)
T 2odp_A 7 SGHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASE-PKVLMSVLNDNSRDMTEVISSLENANY 85 (509)
T ss_dssp SSEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSS-EEEEECTTSGGGGCHHHHHHHHHTCCG
T ss_pred CCCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCC-CceeEeccCCCCCCHHHHHHHHHhccc
Confidence 35789999999999999889999999999998643 278999999999998 899999885 88999999999986
Q ss_pred C-----CCChhHHHHHHHHHHHHhhhccCC-------CCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHH
Q 004256 633 G-----GGSPLAHGLSMAVRVGLNAEKSGD-------VGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEI 700 (765)
Q Consensus 633 g-----G~T~l~~aL~~A~~~l~~~~~~~~-------~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (765)
+ |||+++.||..|.+++.....+.. ..+.+|||||||.+|.+.+ + .++
T Consensus 86 ~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~-----~---------------~~~ 145 (509)
T 2odp_A 86 KDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGS-----P---------------KTA 145 (509)
T ss_dssp GGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSC-----T---------------HHH
T ss_pred ccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCC-----h---------------hHH
Confidence 4 899999999999999855322111 1245899999999986521 0 222
Q ss_pred HHHHHHH------HhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCe--EEEcCCCChHHHHHHHHHHH
Q 004256 701 LEVAGKI------YKAGMSLLVIDTENKFVSTGFAKEIARVAQGK--YYYLPNASDAVISATTKDAL 759 (765)
Q Consensus 701 ~~~a~~~------~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~--y~~~~~~~~~~l~~~~~~~~ 759 (765)
...++.+ ++.|+.+++||+|...++...|++||..++|. ||.+++ .+.|..++....
T Consensus 146 ~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~--~~~l~~~~~~i~ 210 (509)
T 2odp_A 146 VDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQD--TKALHQVFEHML 210 (509)
T ss_dssp HHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESS--HHHHHHHHHHHE
T ss_pred HHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhccCCCCceeeEEecC--HHHHHHHHHhhh
Confidence 3333322 27789999999998535899999999999998 888874 566777776653
No 37
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.72 E-value=1.9e-17 Score=178.21 Aligned_cols=218 Identities=19% Similarity=0.144 Sum_probs=152.4
Q ss_pred CCCCCCCceeechHHHHHHH--Hhhh---cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccc
Q 004256 89 RQFFPLAAVVGQDAIKTALL--LGAI---DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~--l~~~---~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 163 (765)
.++..|++++|++..++.+. +..+ .....+|||+||+|||||++|+++|+.+.
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~---------------------- 63 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG---------------------- 63 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT----------------------
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC----------------------
Confidence 45668899999999888872 2222 23457899999999999999999998753
Q ss_pred cccccccccccCcccccccCCCeEeCCCCCc--ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHH
Q 004256 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVT--EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (765)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~--e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q 241 (765)
.+|+.+.+... ..++++.+ .+ ..+++++||||||+.++...+
T Consensus 64 --------------------~~~~~~~~~~~~~~~~l~~~l-------~~---------~~~~~~~l~lDEi~~l~~~~~ 107 (324)
T 1hqc_A 64 --------------------VNLRVTSGPAIEKPGDLAAIL-------AN---------SLEEGDILFIDEIHRLSRQAE 107 (324)
T ss_dssp --------------------CCEEEECTTTCCSHHHHHHHH-------TT---------TCCTTCEEEETTTTSCCHHHH
T ss_pred --------------------CCEEEEeccccCChHHHHHHH-------HH---------hccCCCEEEEECCcccccchH
Confidence 23333333221 22333321 01 125789999999999999999
Q ss_pred HHHHHHHHcCceEEEeCCee-------EEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHH
Q 004256 242 NLLLNVLTEGVNIVEREGIS-------FKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (765)
Q Consensus 242 ~~Ll~~l~~~~~~v~r~G~~-------~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~ 314 (765)
+.|+.+++++.+. ..+.. ...+.++++|+++| ..+.++++|++||+..+.+.. +..++..+++. .+
T Consensus 108 ~~L~~~l~~~~~~--~v~~~~~~~~~~~~~~~~~~~i~~t~-~~~~~~~~l~~R~~~~i~l~~-~~~~e~~~~l~---~~ 180 (324)
T 1hqc_A 108 EHLYPAMEDFVMD--IVIGQGPAARTIRLELPRFTLIGATT-RPGLITAPLLSRFGIVEHLEY-YTPEELAQGVM---RD 180 (324)
T ss_dssp HHHHHHHHHSEEE--ECCSSSSSCCCEEEECCCCEEEEEES-CCSSCSCSTTTTCSCEEECCC-CCHHHHHHHHH---HH
T ss_pred HHHHHHHHhhhhH--HhccccccccccccCCCCEEEEEeCC-CcccCCHHHHhcccEEEecCC-CCHHHHHHHHH---HH
Confidence 9999999998733 22221 11234789999999 457889999999986667773 44444333322 11
Q ss_pred HHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHH
Q 004256 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDD 394 (765)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~ed 394 (765)
. .. .++.+++++++.++.++ .| ..|....+++.+...|...+...|+.+|
T Consensus 181 ~----------------------~~----~~~~~~~~~~~~l~~~~--~G--~~r~l~~~l~~~~~~a~~~~~~~i~~~~ 230 (324)
T 1hqc_A 181 A----------------------RL----LGVRITEEAALEIGRRS--RG--TMRVAKRLFRRVRDFAQVAGEEVITRER 230 (324)
T ss_dssp H----------------------HT----TTCCCCHHHHHHHHHHS--CS--CHHHHHHHHHHHTTTSTTTSCSCCCHHH
T ss_pred H----------------------Hh----cCCCCCHHHHHHHHHHc--cC--CHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 1 11 13578889988888775 22 4688999999888888888888999999
Q ss_pred HHHHHHH
Q 004256 395 LKKAVEL 401 (765)
Q Consensus 395 v~~A~~l 401 (765)
+..++..
T Consensus 231 ~~~~~~~ 237 (324)
T 1hqc_A 231 ALEALAA 237 (324)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988865
No 38
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.72 E-value=9e-18 Score=179.16 Aligned_cols=242 Identities=17% Similarity=0.228 Sum_probs=151.9
Q ss_pred ceeechHHHHHHHHhhhc--------------CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcc
Q 004256 96 AVVGQDAIKTALLLGAID--------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (765)
Q Consensus 96 ~ivG~~~~~~aL~l~~~~--------------~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (765)
.|+|++.+++++..+... ....+|||+||||||||++|+++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~------------------- 76 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA------------------- 76 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC-------------------
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC-------------------
Confidence 489999999988533322 24578999999999999999999998642
Q ss_pred cccccccccccccCcccccccCCCeEeCCCCCccc-ceeeecccccccccCCCcccCCceeec-cCCeEeccccccCCHH
Q 004256 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTED-RLIGSVDVEESVKTGTTVFQPGLLAEA-HRGVLYIDEINLLDEG 239 (765)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~-~L~G~~d~e~~~~~g~~~~~~Gll~~A-~~GiL~lDEi~~L~~~ 239 (765)
+|+.+.+....+ .++|.. .+..+ .......+|.+..+ .++|||||||+.++..
T Consensus 77 -----------------------~~~~i~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~ 131 (310)
T 1ofh_A 77 -----------------------PFIKVEATKFTEVGYVGKE-VDSII-RDLTDSAGGAIDAVEQNGIVFIDEIDKICKK 131 (310)
T ss_dssp -----------------------CEEEEEGGGGSSCCSGGGS-TTHHH-HHHHHTTTTCHHHHHHHCEEEEECGGGGSCC
T ss_pred -----------------------CEEEEcchhcccCCccCcc-HHHHH-HHHHHHhhHHHhhccCCCEEEEEChhhcCcc
Confidence 233332221111 122210 00000 00001124455554 4789999999999865
Q ss_pred H------------HHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC---CCCCcchHHHhhhhcceeecCCCCHhhH
Q 004256 240 I------------SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP---EEGVVREHLLDRIAINLSADLPMTFEDR 304 (765)
Q Consensus 240 ~------------q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~---~eg~l~~~L~dRf~~~v~i~~p~~~e~r 304 (765)
. ++.|+.+|+++.+.. +.| ...+.++++|+++|. ....++++|++||+..+.+. |++.+++
T Consensus 132 ~~~~~~~~~~~~~~~~Ll~~le~~~~~~-~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~-~~~~~~~ 207 (310)
T 1ofh_A 132 GEYSGADVSREGVQRDLLPLVEGSTVST-KHG--MVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELT-ALSAADF 207 (310)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCEEEE-TTE--EEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECC-CCCHHHH
T ss_pred ccccccchhHHHHHHHHHHHhcCCeEec-ccc--cccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcC-CcCHHHH
Confidence 4 899999999876322 222 234457889999764 34578999999999766676 5566666
Q ss_pred HHHHHHHH-HHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhC----CCCCCChHHHHHHHHH
Q 004256 305 VAAVGIAT-QFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG----GCQGHRAELYAARVAK 379 (765)
Q Consensus 305 ~dI~~l~~-~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~----g~~s~Ra~i~llr~A~ 379 (765)
.+|+.... .+.... ...+.... ..+.++++++++|++.++.. ...+.|.+..+++.+.
T Consensus 208 ~~il~~~~~~~~~~~---------------~~~~~~~~--~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 208 ERILTEPHASLTEQY---------------KALMATEG--VNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM 270 (310)
T ss_dssp HHHHHSSTTCHHHHH---------------HHHHHHTT--CEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHS
T ss_pred HHHHHhhHHHHHHHH---------------HHHHHhcC--CeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHH
Confidence 66654211 111111 11111111 24679999999999998762 0125799999998877
Q ss_pred HHHHHcCC-----C-CCCHHHHHHHHHHh
Q 004256 380 CLAALEGR-----E-KVNVDDLKKAVELV 402 (765)
Q Consensus 380 a~A~l~gr-----~-~Vt~edv~~A~~lv 402 (765)
..+.+... . .|+.+||++++...
T Consensus 271 ~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 271 DKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred HhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 65553322 1 49999999888643
No 39
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.71 E-value=1e-16 Score=183.02 Aligned_cols=178 Identities=13% Similarity=0.190 Sum_probs=137.8
Q ss_pred CceEEEEEeCCCCCCchhHHHHHHHHHHHHHh--hcCCCCeEEEEEeeCCCcEEEc----CCCccHHHHHHHhhcCC---
Q 004256 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGDSAEVLL----PPSRSIAMARKRLERLP--- 631 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~--~~~~~d~v~lv~F~~~~a~~~~----p~t~~~~~~~~~l~~l~--- 631 (765)
+.+++||||.||||.+++++.+|.++..++.. .....++|+||.|++. +.+.+ +.+.+...+...|+.+.
T Consensus 1 ~~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 79 (497)
T 1rrk_A 1 SMNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATY-PKIWVKVSEADSSNADWVTKQLNEINYED 79 (497)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSS-EEEEECTTSGGGGCHHHHHHHHHHCCGGG
T ss_pred CeeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCC-ceEeeccccccccCHHHHHHHHHhCcCcc
Confidence 36899999999999999999999999999875 3566899999999988 88888 66678999999999998
Q ss_pred --CCCCChhHHHHHHHHHHHHhhhc--cC--CCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHH
Q 004256 632 --CGGGSPLAHGLSMAVRVGLNAEK--SG--DVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAG 705 (765)
Q Consensus 632 --~gG~T~l~~aL~~A~~~l~~~~~--~~--~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 705 (765)
.+|+|+++.||..|.+++..... ++ .....+|||||||.+|.+.+. .++.+.++
T Consensus 80 ~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~--------------------~~~~~~~~ 139 (497)
T 1rrk_A 80 HKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDP--------------------ITVIDEIR 139 (497)
T ss_dssp SCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCT--------------------HHHHHHHH
T ss_pred ccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCCh--------------------hHHHHHHH
Confidence 46899999999999999842211 00 113558999999999865310 22222222
Q ss_pred HH----------HhCCCEEEEEeCCCCCCCHHHHHHHHHHcCC--eEEEcCCCChHHHHHHHHHHHHhh
Q 004256 706 KI----------YKAGMSLLVIDTENKFVSTGFAKEIARVAQG--KYYYLPNASDAVISATTKDALSAL 762 (765)
Q Consensus 706 ~~----------~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG--~y~~~~~~~~~~l~~~~~~~~~~~ 762 (765)
.. ++.||.+++||+|.. ++...|++||..+|| .||.++ +.+.|..++.+.++..
T Consensus 140 ~~~~~~~~~~~~~~~~i~v~~igvG~~-~~~~~L~~iA~~~~g~~~~~~~~--~~~~l~~~~~~~i~~~ 205 (497)
T 1rrk_A 140 DLLYIGKDRKNPREDYLDVYVFGVGPL-VNQVNINALASKKDNEQHVCKVK--DMECLEDVFYQMIDES 205 (497)
T ss_dssp HHTTCSSCC-CCCGGGEEEEEEECSSS-CCHHHHHHHSCCCTTCCCEEETT--CHHHHHHHHHHHSCGG
T ss_pred HHhhhhcccccchhcCeeEEEecCCCc-cCHHHHHHHhcCCCCcceEEEeC--CHHHHhhhhhhcccCC
Confidence 22 334899999999974 488999999999999 999997 5677888888766543
No 40
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=99.70 E-value=2.6e-16 Score=157.66 Aligned_cols=166 Identities=13% Similarity=0.129 Sum_probs=126.6
Q ss_pred CCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhc--CCCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhhcCCC-CC
Q 004256 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLPC-GG 634 (765)
Q Consensus 560 ~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~--~~~d~v~lv~F~~~~a~~~~p~t~--~~~~~~~~l~~l~~-gG 634 (765)
.+.+++||||.||||.+.++..+|.++..++.... ...++|+||.|++. +.+.+|++. +...+...|+.++. ||
T Consensus 20 ~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~-~~~~~~l~~~~~~~~~~~~i~~l~~~gg 98 (199)
T 3zqk_A 20 MVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYM-VTVEYPFSEAQSKGDILQRLREIRYQGG 98 (199)
T ss_dssp CCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSS-EEEEECTTSCCCHHHHHHHHHHCCCCCC
T ss_pred CCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCc-ccEEEecCCcCCHHHHHHHHHhCcCCCC
Confidence 47999999999999999999999999999887442 57899999999999 899999885 88899999999974 44
Q ss_pred -CChhHHHHHHHHHHHHhh-hccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCC
Q 004256 635 -GSPLAHGLSMAVRVGLNA-EKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGM 712 (765)
Q Consensus 635 -~T~l~~aL~~A~~~l~~~-~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi 712 (765)
+|+++.||..|.+.+... .........+|||+|||.++.... + ...||
T Consensus 99 ~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~----------------------~--------~~~~v 148 (199)
T 3zqk_A 99 NRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIK----------------------R--------LPGDI 148 (199)
T ss_dssp SCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCC----------------------C--------CCTTE
T ss_pred CcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHH----------------------H--------HhCCC
Confidence 599999999998754321 111122345899999998653211 0 02689
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHHHHHh
Q 004256 713 SLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDALSA 761 (765)
Q Consensus 713 ~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~~~~~ 761 (765)
.+|+||+|.+ ++...|++||. ++.+|++++.++ |..++.....+
T Consensus 149 ~v~~iGiG~~-~~~~~L~~iA~--~~~~~~~~~~~~--L~~~~~~l~~~ 192 (199)
T 3zqk_A 149 QVVPIGVGPN-ANVQELERIGW--PNAPILIQDFET--LPREAPDLVLQ 192 (199)
T ss_dssp EEEEEEESTT-CCHHHHHHHHT--TSCCEEESCTTT--HHHHHHHHHHH
T ss_pred EEEEEEcCCC-CCHHHHHHHhC--CCceEEeCCHHH--HHHHHHHHHHh
Confidence 9999999964 48999999997 555667776543 55666655543
No 41
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.70 E-value=5.3e-17 Score=194.91 Aligned_cols=204 Identities=19% Similarity=0.208 Sum_probs=126.5
Q ss_pred CceeechHHHHHHH--Hhhhc-----C--CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccc
Q 004256 95 AAVVGQDAIKTALL--LGAID-----R--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (765)
Q Consensus 95 ~~ivG~~~~~~aL~--l~~~~-----~--~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (765)
..|+||+.++..+. +.... + ..+++||+||||||||++|++||..+.+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~----------------------- 547 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG----------------------- 547 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS-----------------------
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC-----------------------
Confidence 45899999888772 22211 1 1236999999999999999999998742
Q ss_pred cccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHH
Q 004256 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (765)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll 245 (765)
...+|+.++++...+..... .|. ..+.+....++|||||||+.+++++++.|+
T Consensus 548 ----------------~~~~~i~i~~s~~~~~~~~~--------~~~---l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll 600 (758)
T 3pxi_A 548 ----------------DEESMIRIDMSEYMEKHSTS--------GGQ---LTEKVRRKPYSVVLLDAIEKAHPDVFNILL 600 (758)
T ss_dssp ----------------CTTCEEEEEGGGGCSSCCCC--------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHH
T ss_pred ----------------CCcceEEEechhcccccccc--------cch---hhHHHHhCCCeEEEEeCccccCHHHHHHHH
Confidence 35677777665433332221 011 112333456789999999999999999999
Q ss_pred HHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC-----------CcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHH
Q 004256 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG-----------VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (765)
Q Consensus 246 ~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg-----------~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~ 314 (765)
++|++|. +.+.++....+.++++|+|||.... .|+++|++||+..+.+. |+..+...+|+. .+
T Consensus 601 ~~le~g~--~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~-~l~~~~~~~i~~---~~ 674 (758)
T 3pxi_A 601 QVLEDGR--LTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFH-SLEKKHLTEIVS---LM 674 (758)
T ss_dssp HHHHHSB--CC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC---CHHHHHHHHH---HH
T ss_pred HHhccCe--EEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecC-CCCHHHHHHHHH---HH
Confidence 9999998 4455555556678999999996332 38999999998776555 556655555555 44
Q ss_pred HHhhHHHhc--cccccCcHHHHHHH--HHhcccCCccCCHHHHH
Q 004256 315 QERSNEVFK--MVEEETDLAKTQII--LAREYLKDVAIGREQLK 354 (765)
Q Consensus 315 ~~~~~~~~~--~~~~~~~~~~~~il--~a~~~~~nv~i~~~~l~ 354 (765)
+......+. .....+++.+...+ ..|.|++|++....+++
T Consensus 675 l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~ 718 (758)
T 3pxi_A 675 SDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQ 718 (758)
T ss_dssp HHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHH
T ss_pred HHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHH
Confidence 433332222 12223344444444 22455555544444433
No 42
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=99.69 E-value=1.6e-16 Score=190.40 Aligned_cols=184 Identities=15% Similarity=0.209 Sum_probs=143.3
Q ss_pred cCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhh--cCCCCeEEEEEeeCCCcEEEcCCCc----cHHHHHHHhhcCC-
Q 004256 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPSR----SIAMARKRLERLP- 631 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~--~~~~d~v~lv~F~~~~a~~~~p~t~----~~~~~~~~l~~l~- 631 (765)
+.+.+|+||||.||||.+.++..+|.++..++... ...+++|+||.|++. +.+++|++. +...+...|+.|.
T Consensus 241 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~-~~~~~~l~~~~~~~~~~~~~~i~~l~~ 319 (741)
T 3hrz_D 241 SGSMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATY-PKIWVKVSEADSSNADWVTKQLNEINY 319 (741)
T ss_dssp TCEEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSS-EEEEECTTSGGGGCHHHHHHHHTTCCG
T ss_pred CCceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccC-CceeEeecccCCcCHHHHHHHHHhccc
Confidence 34799999999999999889999999999998753 356799999999998 899999997 8889999999998
Q ss_pred ----CCCCChhHHHHHHHHHHHHhhhcc---C-CCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHH-
Q 004256 632 ----CGGGSPLAHGLSMAVRVGLNAEKS---G-DVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILE- 702 (765)
Q Consensus 632 ----~gG~T~l~~aL~~A~~~l~~~~~~---~-~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 702 (765)
.+|+|+++.||..|++.+...... . ...+.+|||||||.+|.|.+. ....+++..
T Consensus 320 ~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p----------------~~~~~~i~~~ 383 (741)
T 3hrz_D 320 EDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDP----------------ITVIDEIRDL 383 (741)
T ss_dssp GGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCT----------------HHHHHHHHHH
T ss_pred ccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCc----------------hHHHHHHHHH
Confidence 799999999999999998321110 1 112458999999999975321 111111111
Q ss_pred -----HHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCe--EEEcCCCChHHHHHHHHHHHHhh
Q 004256 703 -----VAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGK--YYYLPNASDAVISATTKDALSAL 762 (765)
Q Consensus 703 -----~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~--y~~~~~~~~~~l~~~~~~~~~~~ 762 (765)
.++.+++.||.+++||+|.. ++...|++||..++|. ||.+++ .+.|..++...++.+
T Consensus 384 ~~~~~~a~~~~~~gi~i~~igvG~~-~~~~~L~~ia~~~~g~~~~~~~~~--~~~L~~~~~~l~~~~ 447 (741)
T 3hrz_D 384 LYIGKDRKNPREDYLDVYVFGVGPL-VNQVNINALASKKDNEQHVFKVKD--MENLEDVFYQMIDES 447 (741)
T ss_dssp TTCSSCTTCCCGGGEEEEEEECSSS-CCHHHHHHHSCCCTTCCCEECBSS--HHHHHHHHHHHHHHH
T ss_pred hhcccccccccccCeeEEEEeCCCc-CCHHHHHHHhcCCCCcceEEEeCC--HHHHHHHHHHhhccc
Confidence 22355678999999999974 4889999999999995 888875 677888888877654
No 43
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.69 E-value=5.5e-17 Score=196.97 Aligned_cols=217 Identities=21% Similarity=0.236 Sum_probs=129.2
Q ss_pred CceeechHHHHHHH--Hhhhc-----C--CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccc
Q 004256 95 AAVVGQDAIKTALL--LGAID-----R--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (765)
Q Consensus 95 ~~ivG~~~~~~aL~--l~~~~-----~--~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (765)
..|+|++.+++.+. +.... + ..++|||+||+|||||++|++||..+.+
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~----------------------- 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD----------------------- 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS-----------------------
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC-----------------------
Confidence 35899999888872 22221 1 1257999999999999999999998753
Q ss_pred cccccccccCcccccccCCCeEeCCCCC-----cccceeeecccccccccCCC--cccCCceeeccCCeEeccccccCCH
Q 004256 166 DEKAEYDTAGNLKTQIARSPFVQIPLGV-----TEDRLIGSVDVEESVKTGTT--VFQPGLLAEAHRGVLYIDEINLLDE 238 (765)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~l~~~~-----~e~~L~G~~d~e~~~~~g~~--~~~~Gll~~A~~GiL~lDEi~~L~~ 238 (765)
...+|+.++++. ...++||... +.. |.. ....+.+....++|||||||+.+++
T Consensus 615 ----------------~~~~~i~i~~~~~~~~~~~s~l~g~~~---~~~-G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~ 674 (854)
T 1qvr_A 615 ----------------TEEAMIRIDMTEYMEKHAVSRLIGAPP---GYV-GYEEGGQLTEAVRRRPYSVILFDEIEKAHP 674 (854)
T ss_dssp ----------------SGGGEEEECTTTCCSSGGGGGC------------------CHHHHHHHCSSEEEEESSGGGSCH
T ss_pred ----------------CCCcEEEEechhccchhHHHHHcCCCC---CCc-CccccchHHHHHHhCCCeEEEEecccccCH
Confidence 133455544432 2334554210 000 100 0011222334578999999999999
Q ss_pred HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC------C-------------------CCCcchHHHhhhhcce
Q 004256 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP------E-------------------EGVVREHLLDRIAINL 293 (765)
Q Consensus 239 ~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~------~-------------------eg~l~~~L~dRf~~~v 293 (765)
++++.|+++|++|.++ ...|..... .++++|+|||. + .+.|+++|++||+.++
T Consensus 675 ~~~~~Ll~~l~~~~~~-~~~g~~vd~-~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i 752 (854)
T 1qvr_A 675 DVFNILLQILDDGRLT-DSHGRTVDF-RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIV 752 (854)
T ss_dssp HHHHHHHHHHTTTEEC-CSSSCCEEC-TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCC
T ss_pred HHHHHHHHHhccCceE-CCCCCEecc-CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEE
Confidence 9999999999999843 112222222 35679999997 1 4679999999998876
Q ss_pred eecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHH
Q 004256 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELY 373 (765)
Q Consensus 294 ~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~ 373 (765)
.+ .|++ ++||..++.+|+...+..+... -..+.++++++++|+++++.... +.|.+..
T Consensus 753 ~~-~pl~---~edi~~i~~~~l~~~~~~~~~~-----------------~~~~~~~~~a~~~L~~~~~~~~g-n~R~L~~ 810 (854)
T 1qvr_A 753 VF-RPLT---KEQIRQIVEIQLSYLRARLAEK-----------------RISLELTEAAKDFLAERGYDPVF-GARPLRR 810 (854)
T ss_dssp BC-CCCC---HHHHHHHHHHHHHHHHHHHHTT-----------------TCEEEECHHHHHHHHHHHCBTTT-BTSTHHH
T ss_pred eC-CCCC---HHHHHHHHHHHHHHHHHHHHhC-----------------CceEEECHHHHHHHHHcCCCCCC-ChHHHHH
Confidence 44 3655 5566666666665544433221 01245555666666555542111 3355555
Q ss_pred HHHHH
Q 004256 374 AARVA 378 (765)
Q Consensus 374 llr~A 378 (765)
+++.+
T Consensus 811 ~i~~~ 815 (854)
T 1qvr_A 811 VIQRE 815 (854)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 44
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.69 E-value=7e-17 Score=178.78 Aligned_cols=218 Identities=17% Similarity=0.180 Sum_probs=142.5
Q ss_pred CCCCCCCceeechHHHHHHHHhh------------hcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGA------------IDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~------------~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
..+..|++|+|++.+++.|.... +.....+|||+||+|||||++|++|+..+.
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~--------------- 173 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN--------------- 173 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT---------------
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc---------------
Confidence 45677999999999999884322 222357899999999999999999998753
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceee---ccCCeEecccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDEI 233 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~---A~~GiL~lDEi 233 (765)
.+|+.+.+......++|... .....++.. ...+|||||||
T Consensus 174 ---------------------------~~~~~v~~~~l~~~~~g~~~----------~~~~~~~~~a~~~~~~il~iDEi 216 (389)
T 3vfd_A 174 ---------------------------ATFFNISAASLTSKYVGEGE----------KLVRALFAVARELQPSIIFIDQV 216 (389)
T ss_dssp ---------------------------CEEEEECSCCC-------CH----------HHHHHHHHHHHHSSSEEEEEETG
T ss_pred ---------------------------CcEEEeeHHHhhccccchHH----------HHHHHHHHHHHhcCCeEEEEECc
Confidence 46777666544444444210 001112222 23479999999
Q ss_pred ccC-----------CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHh
Q 004256 234 NLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFE 302 (765)
Q Consensus 234 ~~L-----------~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e 302 (765)
+.| ...+++.|+..++... ...+.+++||+++|. ...+.++|++||...+.+.. ++.+
T Consensus 217 d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~v~vI~atn~-~~~l~~~l~~R~~~~i~i~~-p~~~ 285 (389)
T 3vfd_A 217 DSLLCERREGEHDASRRLKTEFLIEFDGVQ---------SAGDDRVLVMGATNR-PQELDEAVLRRFIKRVYVSL-PNEE 285 (389)
T ss_dssp GGGC--------CTHHHHHHHHHHHHHHHC--------------CEEEEEEESC-GGGCCHHHHTTCCEEEECCC-CCHH
T ss_pred hhhcccCCCccchHHHHHHHHHHHHhhccc---------ccCCCCEEEEEecCC-chhcCHHHHcCcceEEEcCC-cCHH
Confidence 988 5677888888887432 112457899999995 55789999999987777875 5666
Q ss_pred hHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q 004256 303 DRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLA 382 (765)
Q Consensus 303 ~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A 382 (765)
.+.+|+..... ..++.++++.++.|+..+... +.+....+++.|...+
T Consensus 286 ~r~~il~~~~~-----------------------------~~~~~l~~~~~~~la~~~~g~---~~~~l~~L~~~a~~~~ 333 (389)
T 3vfd_A 286 TRLLLLKNLLC-----------------------------KQGSPLTQKELAQLARMTDGY---SGSDLTALAKDAALGP 333 (389)
T ss_dssp HHHHHHHHHHT-----------------------------TSCCCSCHHHHHHHHHHTTTC---CHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHH-----------------------------hcCCCCCHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHH
Confidence 66666542110 013567777777776654332 4456666777776666
Q ss_pred HHc------------CCCCCCHHHHHHHHHH
Q 004256 383 ALE------------GREKVNVDDLKKAVEL 401 (765)
Q Consensus 383 ~l~------------gr~~Vt~edv~~A~~l 401 (765)
.-+ +...|+.+|+..++.-
T Consensus 334 ~rel~~~~~~~~~~~~~~~i~~~d~~~al~~ 364 (389)
T 3vfd_A 334 IRELKPEQVKNMSASEMRNIRLSDFTESLKK 364 (389)
T ss_dssp HHTSCCC---CCSSSCCCCCCHHHHHHHHHH
T ss_pred HHhhhhhhhhccchhhcCCcCHHHHHHHHHH
Confidence 544 3457999999999874
No 45
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.69 E-value=3.2e-16 Score=171.65 Aligned_cols=144 Identities=23% Similarity=0.254 Sum_probs=105.2
Q ss_pred CCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC-CCCCcchHHHhhhhcceeecCCCCHhh
Q 004256 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP-EEGVVREHLLDRIAINLSADLPMTFED 303 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~-~eg~l~~~L~dRf~~~v~i~~p~~~e~ 303 (765)
.+|||||||+.|+...++.|+..+++....+- -......+.+|++++. ....++++|++||.. +.+. |++.++
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~----ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i~~~-~~~~~e 263 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAPVL----IMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-VSTT-PYSEKD 263 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCCEE----EEEESCSEEECBTSSCEEETTCCHHHHTTEEE-EEEC-CCCHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCCee----eeecccceeeeeccCCCCcccCCHHHHhhccE-EEec-CCCHHH
Confidence 36999999999999999999999987642110 0000111333333332 246788999999988 4676 566776
Q ss_pred HHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Q 004256 304 RVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAA 383 (765)
Q Consensus 304 r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~ 383 (765)
..+|+.... .. .++.++++++++++.++... +.|.++.+++.|...|.
T Consensus 264 ~~~il~~~~-------------------------~~----~~~~~~~~~l~~l~~~~~~G---~~r~~~~ll~~a~~~A~ 311 (368)
T 3uk6_A 264 TKQILRIRC-------------------------EE----EDVEMSEDAYTVLTRIGLET---SLRYAIQLITAASLVCR 311 (368)
T ss_dssp HHHHHHHHH-------------------------HH----TTCCBCHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------------------------HH----cCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHH
Confidence 666654211 00 24679999999999988763 57999999999999999
Q ss_pred HcCCCCCCHHHHHHHHHHhcCCC
Q 004256 384 LEGREKVNVDDLKKAVELVILPR 406 (765)
Q Consensus 384 l~gr~~Vt~edv~~A~~lvl~hR 406 (765)
..++..|+.+||++|+...+..+
T Consensus 312 ~~~~~~It~~~v~~a~~~~~~~~ 334 (368)
T 3uk6_A 312 KRKGTEVQVDDIKRVYSLFLDES 334 (368)
T ss_dssp HTTCSSBCHHHHHHHHHHSBCHH
T ss_pred HhCCCCCCHHHHHHHHHHhcCHH
Confidence 99999999999999999866544
No 46
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1e-16 Score=175.26 Aligned_cols=215 Identities=19% Similarity=0.169 Sum_probs=147.1
Q ss_pred CCCCceeechHHHHHHHHhhh-------------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCC
Q 004256 92 FPLAAVVGQDAIKTALLLGAI-------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~~-------------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~ 158 (765)
..|++|.|.+.+++.|.-... .+...+|||+||||||||++|++|+..+
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~------------------ 206 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT------------------ 206 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH------------------
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh------------------
Confidence 468999999999998832211 1234689999999999999999999875
Q ss_pred CcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEecccccc
Q 004256 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINL 235 (765)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~~ 235 (765)
..+|+.+..+...+.++|.- ++.+ .-++..| ...|||||||+.
T Consensus 207 ------------------------~~~f~~v~~s~l~sk~vGes--e~~v--------r~lF~~Ar~~aP~IIFiDEiDa 252 (405)
T 4b4t_J 207 ------------------------DCKFIRVSGAELVQKYIGEG--SRMV--------RELFVMAREHAPSIIFMDEIDS 252 (405)
T ss_dssp ------------------------TCEEEEEEGGGGSCSSTTHH--HHHH--------HHHHHHHHHTCSEEEEEESSSC
T ss_pred ------------------------CCCceEEEhHHhhccccchH--HHHH--------HHHHHHHHHhCCceEeeecchh
Confidence 35677665554444455421 0110 1122222 346999999998
Q ss_pred CCH--------------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCC
Q 004256 236 LDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (765)
Q Consensus 236 L~~--------------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~ 299 (765)
+-. .+...||..|+.-. ...++.||+||| ....++++|+. ||+..+.+.+ |
T Consensus 253 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~V~vIaATN-rpd~LDpAllRpGRfD~~I~i~l-P 319 (405)
T 4b4t_J 253 IGSTRVEGSGGGDSEVQRTMLELLNQLDGFE-----------TSKNIKIIMATN-RLDILDPALLRPGRIDRKIEFPP-P 319 (405)
T ss_dssp CTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT-----------CCCCEEEEEEES-CSSSSCHHHHSTTSSCCEEECCC-C
T ss_pred hccCCCCCCCCCcHHHHHHHHHHHHhhhccC-----------CCCCeEEEeccC-ChhhCCHhHcCCCcCceEEEcCC-c
Confidence 732 24566777776422 123578999999 77889999998 9999999985 5
Q ss_pred CHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Q 004256 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (765)
Q Consensus 300 ~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~ 379 (765)
+.+.|.+|+.... . ......++. ++.|++.+ ...|.+....+++.|.
T Consensus 320 d~~~R~~Il~~~~---~----------------------~~~l~~dvd-----l~~lA~~t---~G~SGADi~~l~~eA~ 366 (405)
T 4b4t_J 320 SVAARAEILRIHS---R----------------------KMNLTRGIN-----LRKVAEKM---NGCSGADVKGVCTEAG 366 (405)
T ss_dssp CHHHHHHHHHHHH---T----------------------TSBCCSSCC-----HHHHHHHC---CSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh---c----------------------CCCCCccCC-----HHHHHHHC---CCCCHHHHHHHHHHHH
Confidence 8888888875321 0 001111221 34454433 3336777888999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHhcC
Q 004256 380 CLAALEGREKVNVDDLKKAVELVIL 404 (765)
Q Consensus 380 a~A~l~gr~~Vt~edv~~A~~lvl~ 404 (765)
..|.-+++..|+.+|+..|+.-++.
T Consensus 367 ~~Air~~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 367 MYALRERRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp HHHHHTTCSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHhC
Confidence 8998899999999999999988765
No 47
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.67 E-value=5.4e-17 Score=159.83 Aligned_cols=167 Identities=11% Similarity=0.033 Sum_probs=122.7
Q ss_pred CceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCcc--HHHHHHHhhcCCC-CCCCh
Q 004256 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRS--IAMARKRLERLPC-GGGSP 637 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~~--~~~~~~~l~~l~~-gG~T~ 637 (765)
+.+++||||.||||.+.++..+|.++..++......+++|+||.|++. +.+.+|++.. ...+...++.+.. +|+|+
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~-~~~~~~l~~~~~~~~~~~~~~~i~~~~g~T~ 80 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTS-YKTEFDFSDYVKRKDPDALLKHVKHMLLLTN 80 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSS-EEEEECHHHHHHHCCHHHHHTTCCCCCBCCC
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCc-eeEEEcCcccCCHHHHHHHHHhcccCCCCCh
Confidence 478999999999999889999999999998865445679999999998 8888998752 2346667777764 78999
Q ss_pred hHHHHHHHHHHH-HhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEE
Q 004256 638 LAHGLSMAVRVG-LNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLV 716 (765)
Q Consensus 638 l~~aL~~A~~~l-~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~v 716 (765)
++.||..|.+.+ ..........+.+|||+|||.+|.+.. . .+..|+.+++
T Consensus 81 ~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~--------------~---------------~~~~~i~i~~ 131 (179)
T 1mjn_A 81 TFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGN--------------I---------------DAAKDIIRYI 131 (179)
T ss_dssp HHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSC--------------C---------------GGGTTSEEEE
T ss_pred HHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcc--------------h---------------HHHCCCEEEE
Confidence 999999998643 322211222356899999999885421 0 1357999999
Q ss_pred EeCCCCCCC----HHHHHHHHHHcCCe-EEEcCCCChHHHHHHHHHHHH
Q 004256 717 IDTENKFVS----TGFAKEIARVAQGK-YYYLPNASDAVISATTKDALS 760 (765)
Q Consensus 717 ig~~~~~~~----~~~l~~LA~~~gG~-y~~~~~~~~~~l~~~~~~~~~ 760 (765)
||+|... + ...|+.||...+|. +|.+++. +.|..+++....
T Consensus 132 igvG~~~-~~~~~~~~L~~iA~~~~~~~~~~~~~~--~~L~~i~~~i~~ 177 (179)
T 1mjn_A 132 IGIGKHF-QTKESQETLHKFASKPASEFVKILDTF--EKLKDLCTELQK 177 (179)
T ss_dssp EEESGGG-CSHHHHHTTGGGSCSCHHHHEEEESSG--GGSCCHHHHHHH
T ss_pred EEccccc-cccccHHHHHHHhCCccHhcEEEeCCH--HHHHHHHHHHHh
Confidence 9999753 3 37899999988875 5777754 335555554443
No 48
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.67 E-value=1.6e-16 Score=165.55 Aligned_cols=218 Identities=19% Similarity=0.230 Sum_probs=140.8
Q ss_pred CCCCCCCceeechHHHHHHH--Hhhhc----------CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 89 RQFFPLAAVVGQDAIKTALL--LGAID----------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~--l~~~~----------~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
.....|++|+|++.+++.|. +..+. ....+|||+||+|||||++|++|+..+.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--------------- 70 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--------------- 70 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT---------------
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC---------------
Confidence 34578999999999998872 22111 1245799999999999999999998753
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeecc---CCeEecccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEI 233 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~---~GiL~lDEi 233 (765)
.+|+.+++....+.++|.. . .....++..+. .+++|||||
T Consensus 71 ---------------------------~~~~~i~~~~~~~~~~~~~---------~-~~~~~~~~~a~~~~~~il~iDei 113 (257)
T 1lv7_A 71 ---------------------------VPFFTISGSDFVEMFVGVG---------A-SRVRDMFEQAKKAAPCIIFIDEI 113 (257)
T ss_dssp ---------------------------CCEEEECSCSSTTSCCCCC---------H-HHHHHHHHHHHTTCSEEEEETTH
T ss_pred ---------------------------CCEEEEeHHHHHHHhhhhh---------H-HHHHHHHHHHHHcCCeeehhhhh
Confidence 3455555443333333320 0 00112233332 359999999
Q ss_pred ccCCH--------------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecC
Q 004256 234 NLLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (765)
Q Consensus 234 ~~L~~--------------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~ 297 (765)
+.+.. ..++.|+..++.-. .+.++++|+++|. ...+.+.++. ||+..+.+..
T Consensus 114 d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~~tn~-~~~l~~~l~r~~rf~~~i~i~~ 181 (257)
T 1lv7_A 114 DAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----------GNEGIIVIAATNR-PDVLDPALLRPGRFDRQVVVGL 181 (257)
T ss_dssp HHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-----------SSSCEEEEEEESC-TTTSCGGGGSTTSSCEEEECCC
T ss_pred hhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc-----------cCCCEEEEEeeCC-chhCCHHHcCCCcCCeEEEeCC
Confidence 87643 45677777776421 1236889999995 4567788887 9988877875
Q ss_pred CCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHH-HHHHHHHHHhCCCCCCChHHHHHH
Q 004256 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAAR 376 (765)
Q Consensus 298 p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~-l~~l~~~a~~~g~~s~Ra~i~llr 376 (765)
| +.+.|.+|+.. +... ..+.+++ +..+ +......+.|.+..+++
T Consensus 182 P-~~~~r~~il~~---~~~~----------------------------~~l~~~~~~~~l---a~~~~G~~~~dl~~l~~ 226 (257)
T 1lv7_A 182 P-DVRGREQILKV---HMRR----------------------------VPLAPDIDAAII---ARGTPGFSGADLANLVN 226 (257)
T ss_dssp C-CHHHHHHHHHH---HHTT----------------------------SCBCTTCCHHHH---HHTCTTCCHHHHHHHHH
T ss_pred C-CHHHHHHHHHH---HHhc----------------------------CCCCccccHHHH---HHHcCCCCHHHHHHHHH
Confidence 4 66666666542 2111 0111111 2222 22222225688888999
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhcCC
Q 004256 377 VAKCLAALEGREKVNVDDLKKAVELVILP 405 (765)
Q Consensus 377 ~A~a~A~l~gr~~Vt~edv~~A~~lvl~h 405 (765)
.|...|..++...|+.+|+.+|+..++.+
T Consensus 227 ~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 227 EAALFAARGNKRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHhcC
Confidence 99999999999999999999999987643
No 49
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.66 E-value=1.5e-16 Score=167.97 Aligned_cols=223 Identities=19% Similarity=0.217 Sum_probs=145.3
Q ss_pred CCCCCCCceeechHHHHHHHHhhhc-------------CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCC
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAID-------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~-------------~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~ 155 (765)
...+.|++|+|++.+++.|...... ....+|||+||||||||++|++++..+.
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~-------------- 76 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN-------------- 76 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT--------------
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--------------
Confidence 4567899999999999988322211 3457899999999999999999998764
Q ss_pred CCCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCcee---eccCCeEeccc
Q 004256 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYIDE 232 (765)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~---~A~~GiL~lDE 232 (765)
.+|+.+.+......++|... .....++. ....++|||||
T Consensus 77 ----------------------------~~~~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~vl~iDE 118 (285)
T 3h4m_A 77 ----------------------------ATFIRVVGSELVKKFIGEGA----------SLVKDIFKLAKEKAPSIIFIDE 118 (285)
T ss_dssp ----------------------------CEEEEEEGGGGCCCSTTHHH----------HHHHHHHHHHHHTCSEEEEEET
T ss_pred ----------------------------CCEEEEehHHHHHhccchHH----------HHHHHHHHHHHHcCCeEEEEEC
Confidence 23443332221122222100 00011111 12346999999
Q ss_pred cccC-----------CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCC
Q 004256 233 INLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (765)
Q Consensus 233 i~~L-----------~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~ 299 (765)
|+.+ +...+..|+.+++.... + ....++++|+|+|. ...+.++++. ||+..+.+. +|
T Consensus 119 id~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~-~-------~~~~~~~vI~ttn~-~~~l~~~l~~~~Rf~~~i~~~-~p 188 (285)
T 3h4m_A 119 IDAIAAKRTDALTGGDREVQRTLMQLLAEMDG-F-------DARGDVKIIGATNR-PDILDPAILRPGRFDRIIEVP-AP 188 (285)
T ss_dssp THHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT-T-------CSSSSEEEEEECSC-GGGBCHHHHSTTSEEEEEECC-CC
T ss_pred HHHhcccCccccCCccHHHHHHHHHHHHHhhC-C-------CCCCCEEEEEeCCC-chhcCHHHcCCCcCCeEEEEC-CC
Confidence 9998 56777777777654210 0 01236889999994 4668899988 999887787 46
Q ss_pred CHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Q 004256 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (765)
Q Consensus 300 ~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~ 379 (765)
+.+++.+|+.... .. ...... ..++.++..+ ...+.|....+++.|.
T Consensus 189 ~~~~r~~il~~~~---~~----------------------~~~~~~-----~~~~~l~~~~---~g~~~~~i~~l~~~a~ 235 (285)
T 3h4m_A 189 DEKGRLEILKIHT---RK----------------------MNLAED-----VNLEEIAKMT---EGCVGAELKAICTEAG 235 (285)
T ss_dssp CHHHHHHHHHHHH---TT----------------------SCBCTT-----CCHHHHHHHC---TTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---hc----------------------CCCCCc-----CCHHHHHHHc---CCCCHHHHHHHHHHHH
Confidence 7777777765221 00 011111 1133443332 2336788999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHhcCCC
Q 004256 380 CLAALEGREKVNVDDLKKAVELVILPR 406 (765)
Q Consensus 380 a~A~l~gr~~Vt~edv~~A~~lvl~hR 406 (765)
..|..+++..|+.+|+.+|+..++..+
T Consensus 236 ~~a~~~~~~~I~~~d~~~al~~~~~~~ 262 (285)
T 3h4m_A 236 MNAIRELRDYVTMDDFRKAVEKIMEKK 262 (285)
T ss_dssp HHHHHTTCSSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCcCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999887644
No 50
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.66 E-value=5.4e-17 Score=177.76 Aligned_cols=217 Identities=20% Similarity=0.191 Sum_probs=146.1
Q ss_pred CCCCCceeechHHHHHHHHhhh-------------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCC
Q 004256 91 FFPLAAVVGQDAIKTALLLGAI-------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~l~~~-------------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~ 157 (765)
...|++|.|.+.+++.|.-... .+...+|||+||||||||++|++|+..+
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~----------------- 240 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT----------------- 240 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH-----------------
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh-----------------
Confidence 4569999999999988832111 1234789999999999999999999875
Q ss_pred CCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEeccccc
Q 004256 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEIN 234 (765)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~ 234 (765)
..+|+.+..+...+.++|.- ++. ..-++..| ...|||||||+
T Consensus 241 -------------------------~~~fi~v~~s~l~sk~vGes--ek~--------ir~lF~~Ar~~aP~IIfiDEiD 285 (437)
T 4b4t_I 241 -------------------------SATFLRIVGSELIQKYLGDG--PRL--------CRQIFKVAGENAPSIVFIDEID 285 (437)
T ss_dssp -------------------------TCEEEEEESGGGCCSSSSHH--HHH--------HHHHHHHHHHTCSEEEEEEEES
T ss_pred -------------------------CCCEEEEEHHHhhhccCchH--HHH--------HHHHHHHHHhcCCcEEEEehhh
Confidence 35677665554444555521 010 01122222 24699999999
Q ss_pred cCCH--------------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCC
Q 004256 235 LLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (765)
Q Consensus 235 ~L~~--------------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p 298 (765)
.+-. .+...||..|+.-. ...+++||+||| ....++++|+. ||+..|.+.+
T Consensus 286 ai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~-----------~~~~ViVIaATN-rpd~LDpALlRpGRfD~~I~v~l- 352 (437)
T 4b4t_I 286 AIGTKRYDSNSGGEREIQRTMLELLNQLDGFD-----------DRGDVKVIMATN-KIETLDPALIRPGRIDRKILFEN- 352 (437)
T ss_dssp SSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC-----------CSSSEEEEEEES-CSTTCCTTSSCTTTEEEEECCCC-
T ss_pred hhcccCCCCCCCccHHHHHHHHHHHHHhhCcC-----------CCCCEEEEEeCC-ChhhcCHHHhcCCceeEEEEcCC-
Confidence 7721 24455666665321 123578999999 67788999997 9999988885
Q ss_pred CCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 004256 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (765)
Q Consensus 299 ~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A 378 (765)
|+.+.|.+|+.... . ...+..++. ++.|+..+ ...|.+....+++.|
T Consensus 353 Pd~~~R~~Il~~~l---~----------------------~~~l~~dvd-----l~~LA~~T---~GfSGADI~~l~~eA 399 (437)
T 4b4t_I 353 PDLSTKKKILGIHT---S----------------------KMNLSEDVN-----LETLVTTK---DDLSGADIQAMCTEA 399 (437)
T ss_dssp CCHHHHHHHHHHHH---T----------------------TSCBCSCCC-----HHHHHHHC---CSCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHh---c----------------------CCCCCCcCC-----HHHHHHhC---CCCCHHHHHHHHHHH
Confidence 58888888875321 0 001111121 34454433 233677888899999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhcCC
Q 004256 379 KCLAALEGREKVNVDDLKKAVELVILP 405 (765)
Q Consensus 379 ~a~A~l~gr~~Vt~edv~~A~~lvl~h 405 (765)
...|.-+++..|+.+|+..|++.+.+.
T Consensus 400 ~~~Air~~~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 400 GLLALRERRMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCccCHHHHHHHHHHHhCC
Confidence 999999999999999999999887653
No 51
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.6e-16 Score=175.60 Aligned_cols=218 Identities=18% Similarity=0.140 Sum_probs=147.4
Q ss_pred CCCCCCceeechHHHHHHHHhh------------h-cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALLLGA------------I-DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~------------~-~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
+...|++|.|.+.+|+.|.-.. + .+...+|||+||||||||++|++|+..+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---------------- 267 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---------------- 267 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH----------------
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------------
Confidence 3467999999999998883111 1 1235789999999999999999999875
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEecccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi 233 (765)
..+|+.+......+.++|.- ++. ..-++..| ...|||||||
T Consensus 268 --------------------------~~~fi~vs~s~L~sk~vGes--ek~--------ir~lF~~Ar~~aP~IIfiDEi 311 (467)
T 4b4t_H 268 --------------------------DATFIRVIGSELVQKYVGEG--ARM--------VRELFEMARTKKACIIFFDEI 311 (467)
T ss_dssp --------------------------TCEEEEEEGGGGCCCSSSHH--HHH--------HHHHHHHHHHTCSEEEEEECC
T ss_pred --------------------------CCCeEEEEhHHhhcccCCHH--HHH--------HHHHHHHHHhcCCceEeeccc
Confidence 34676665554444455521 010 01122222 3469999999
Q ss_pred ccCCH--------------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecC
Q 004256 234 NLLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (765)
Q Consensus 234 ~~L~~--------------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~ 297 (765)
+.+-. .+...||..|+... ...+++||+||| ....++++|+. ||+..+.+.+
T Consensus 312 Dai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~ViVIaATN-rpd~LDpALlRpGRFD~~I~i~l 379 (467)
T 4b4t_H 312 DAVGGARFDDGAGGDNEVQRTMLELITQLDGFD-----------PRGNIKVMFATN-RPNTLDPALLRPGRIDRKVEFSL 379 (467)
T ss_dssp TTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC-----------CTTTEEEEEECS-CTTSBCHHHHSTTTCCEEECCCC
T ss_pred ccccccccCcCCCccHHHHHHHHHHHHHhhccC-----------CCCcEEEEeCCC-CcccCChhhhccccccEEEEeCC
Confidence 98731 24455666665322 123578999999 67789999998 9999998885
Q ss_pred CCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHH
Q 004256 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARV 377 (765)
Q Consensus 298 p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~ 377 (765)
|+.+.|.+|+.... .. ...-.++. ++.|+..+.. .|.+.+..+++.
T Consensus 380 -Pd~~~R~~Ilk~~l---~~----------------------~~l~~dvd-----l~~LA~~T~G---fSGADI~~l~~e 425 (467)
T 4b4t_H 380 -PDLEGRANIFRIHS---KS----------------------MSVERGIR-----WELISRLCPN---STGAELRSVCTE 425 (467)
T ss_dssp -CCHHHHHHHHHHHH---TT----------------------SCBCSSCC-----HHHHHHHCCS---CCHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHh---cC----------------------CCCCCCCC-----HHHHHHHCCC---CCHHHHHHHHHH
Confidence 58888888875321 00 01111121 3455544432 366778888999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcCC
Q 004256 378 AKCLAALEGREKVNVDDLKKAVELVILP 405 (765)
Q Consensus 378 A~a~A~l~gr~~Vt~edv~~A~~lvl~h 405 (765)
|...|..+++..|+.+|+..|+.-++..
T Consensus 426 Aa~~Air~~~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 426 AGMFAIRARRKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp HHHHHHHHTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccCHHHHHHHHHHHhcC
Confidence 9989999999999999999999887753
No 52
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.65 E-value=8.5e-16 Score=173.60 Aligned_cols=131 Identities=23% Similarity=0.298 Sum_probs=105.0
Q ss_pred CeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecC------------CCCCcchHHHhhhhcce
Q 004256 226 GVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP------------EEGVVREHLLDRIAINL 293 (765)
Q Consensus 226 GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~------------~eg~l~~~L~dRf~~~v 293 (765)
+|+||||++.|+.+.++.|+..|++.. ..+.++++ |+ ....+.+.|++||..+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~-------------~~~~il~t-n~~~~~i~~~~~~~~~~~l~~~i~sR~~~~- 361 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSI-------------APIVIFAS-NRGNCVIRGTEDITSPHGIPLDLLDRVMII- 361 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTT-------------CCEEEEEE-CCSEEECBTTSSCEEETTCCHHHHTTEEEE-
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccC-------------CCEEEEec-CCccccccccccccccccCChhHHhhccee-
Confidence 799999999999999999999999754 23333344 32 2567889999999885
Q ss_pred eecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHH
Q 004256 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELY 373 (765)
Q Consensus 294 ~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~ 373 (765)
.+. |++.++..+|+...... .++.++++++.+++.++... ++|..+.
T Consensus 362 ~~~-~~~~~e~~~iL~~~~~~-----------------------------~~~~~~~~~~~~i~~~a~~g---~~r~a~~ 408 (456)
T 2c9o_A 362 RTM-LYTPQEMKQIIKIRAQT-----------------------------EGINISEEALNHLGEIGTKT---TLRYSVQ 408 (456)
T ss_dssp ECC-CCCHHHHHHHHHHHHHH-----------------------------HTCCBCHHHHHHHHHHHHHS---CHHHHHH
T ss_pred eCC-CCCHHHHHHHHHHHHHH-----------------------------hCCCCCHHHHHHHHHHccCC---CHHHHHH
Confidence 665 77888777776533211 13678999999999888543 6899999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHhcC
Q 004256 374 AARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (765)
Q Consensus 374 llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~ 404 (765)
+++.|..+|.++|+..|+.+||++|+.+++-
T Consensus 409 ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d 439 (456)
T 2c9o_A 409 LLTPANLLAKINGKDSIEKEHVEEISELFYD 439 (456)
T ss_dssp THHHHHHHHHHTTCSSBCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhcCCCccCHHHHHHHHHHhcC
Confidence 9999999999999999999999999998763
No 53
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.65 E-value=1.6e-16 Score=178.55 Aligned_cols=215 Identities=17% Similarity=0.236 Sum_probs=137.3
Q ss_pred CCCCCCceeechHHH---HHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccc
Q 004256 90 QFFPLAAVVGQDAIK---TALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~---~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (765)
++..|++++||+.++ +.|..........+|||+||||||||++|++|++.+.
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~------------------------- 75 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN------------------------- 75 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT-------------------------
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC-------------------------
Confidence 456788999999988 5553333333446899999999999999999999864
Q ss_pred ccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHH
Q 004256 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (765)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~ 246 (765)
.+|+.+..... |.-++ +.++.... .....+.++|||||||+.|+...|+.|+.
T Consensus 76 -----------------~~f~~l~a~~~-----~~~~i-r~~~~~a~----~~~~~~~~~iLfIDEI~~l~~~~q~~LL~ 128 (447)
T 3pvs_A 76 -----------------ADVERISAVTS-----GVKEI-REAIERAR----QNRNAGRRTILFVDEVHRFNKSQQDAFLP 128 (447)
T ss_dssp -----------------CEEEEEETTTC-----CHHHH-HHHHHHHH----HHHHTTCCEEEEEETTTCC------CCHH
T ss_pred -----------------CCeEEEEeccC-----CHHHH-HHHHHHHH----HhhhcCCCcEEEEeChhhhCHHHHHHHHH
Confidence 23444332211 10000 00000000 00112457899999999999999999999
Q ss_pred HHHcCceEEEeCCeeEEeeCceEEEEeecCC-CCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccc
Q 004256 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPE-EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (765)
Q Consensus 247 ~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~-eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~ 325 (765)
.++++. +++|++++.. ...+.++|++||.++ .+. |++.+....++. .++....
T Consensus 129 ~le~~~---------------v~lI~att~n~~~~l~~aL~sR~~v~-~l~-~l~~edi~~il~---~~l~~~~------ 182 (447)
T 3pvs_A 129 HIEDGT---------------ITFIGATTENPSFELNSALLSRARVY-LLK-SLSTEDIEQVLT---QAMEDKT------ 182 (447)
T ss_dssp HHHTTS---------------CEEEEEESSCGGGSSCHHHHTTEEEE-ECC-CCCHHHHHHHHH---HHHHCTT------
T ss_pred HHhcCc---------------eEEEecCCCCcccccCHHHhCceeEE-eeC-CcCHHHHHHHHH---HHHHHHh------
Confidence 999875 5667776543 357899999999865 465 455554444433 3322110
Q ss_pred cccCcHHHHHHHHHhcc-cCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHc--CCCCCCHHHHHHHHH
Q 004256 326 EEETDLAKTQIILAREY-LKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALE--GREKVNVDDLKKAVE 400 (765)
Q Consensus 326 ~~~~~~~~~~il~a~~~-~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~--gr~~Vt~edv~~A~~ 400 (765)
+.. ..++.+++++++.|+.++ .. +.|.++++++.+...+... |...|+.+||.+++.
T Consensus 183 --------------~~~~~~~~~i~~~al~~L~~~~-~G---d~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 183 --------------RGYGGQDIVLPDETRRAIAELV-NG---DARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp --------------TSSTTSSEECCHHHHHHHHHHH-CS---CHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred --------------hhhccccCcCCHHHHHHHHHHC-CC---CHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHh
Confidence 011 135789999999998884 22 5799999999988777544 556899999998874
No 54
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.64 E-value=2e-16 Score=168.97 Aligned_cols=213 Identities=17% Similarity=0.189 Sum_probs=138.2
Q ss_pred ceeechHHHHHHH--Hhhh-------------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCc
Q 004256 96 AVVGQDAIKTALL--LGAI-------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (765)
Q Consensus 96 ~ivG~~~~~~aL~--l~~~-------------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~ 160 (765)
+|+|++.+++.|. +... .....+|||+||||||||++|+++++.+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~--------------- 96 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGY--------------- 96 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTS---------------
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCC---------------
Confidence 4899999999883 2211 334557999999999999999999987642000
Q ss_pred ccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccC----
Q 004256 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL---- 236 (765)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L---- 236 (765)
....+|+.+++......++|.. .....+++..+.+++|||||++.|
T Consensus 97 --------------------~~~~~~~~~~~~~l~~~~~g~~----------~~~~~~~~~~~~~~vl~iDEid~l~~~~ 146 (309)
T 3syl_A 97 --------------------VRKGHLVSVTRDDLVGQYIGHT----------APKTKEVLKRAMGGVLFIDEAYYLYRPD 146 (309)
T ss_dssp --------------------SSSCCEEEECGGGTCCSSTTCH----------HHHHHHHHHHHTTSEEEEETGGGSCCCC
T ss_pred --------------------cCCCcEEEEcHHHhhhhccccc----------HHHHHHHHHhcCCCEEEEEChhhhccCC
Confidence 0245677766655444555531 111245666778899999999987
Q ss_pred -----CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC----CcchHHHhhhhcceeecCCCCHhhHHHH
Q 004256 237 -----DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAA 307 (765)
Q Consensus 237 -----~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg----~l~~~L~dRf~~~v~i~~p~~~e~r~dI 307 (765)
+...++.|+..|+++. .++++|+++|+..- .+.++|.+||+..+.+. |++.+.+.+|
T Consensus 147 ~~~~~~~~~~~~Ll~~l~~~~-------------~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~-~~~~~~~~~i 212 (309)
T 3syl_A 147 NERDYGQEAIEILLQVMENNR-------------DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFP-DYSDEELFEI 212 (309)
T ss_dssp ---CCTHHHHHHHHHHHHHCT-------------TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEEC-CCCHHHHHHH
T ss_pred CcccccHHHHHHHHHHHhcCC-------------CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcC-CcCHHHHHHH
Confidence 8899999999999763 36788999986431 24589999998887787 5677766666
Q ss_pred HHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHh----CCCCCCChHHHHHHHHHHHHH
Q 004256 308 VGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR----GGCQGHRAELYAARVAKCLAA 383 (765)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~----~g~~s~Ra~i~llr~A~a~A~ 383 (765)
+.. +... .++.+++++++.++.++.. ....+.|.+..+++.+...+.
T Consensus 213 l~~---~l~~--------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~ 263 (309)
T 3syl_A 213 AGH---MLDD--------------------------QNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQA 263 (309)
T ss_dssp HHH---HHHH--------------------------TTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHH--------------------------cCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHH
Confidence 543 2211 1245666776666665431 111135666666666654333
Q ss_pred Hc----CCCCCCHHHHH
Q 004256 384 LE----GREKVNVDDLK 396 (765)
Q Consensus 384 l~----gr~~Vt~edv~ 396 (765)
.. +...++.+|+.
T Consensus 264 ~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 264 NRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHC---CEEHHHHH
T ss_pred HHHHhccCCCCCHHHHh
Confidence 22 34567777765
No 55
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.64 E-value=6.3e-16 Score=168.95 Aligned_cols=200 Identities=17% Similarity=0.183 Sum_probs=127.4
Q ss_pred CCCCCCCceeechHHHHHHHHhhh------------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAI------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~------------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
.....|++|+|++.+++.|..... .....+|||+||||||||++|++|+..+.
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--------------- 109 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--------------- 109 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT---------------
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC---------------
Confidence 345679999999999998843321 11245799999999999999999999753
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEecccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi 233 (765)
.+|+.+.+......++|.. ......++..+ ..+|||||||
T Consensus 110 ---------------------------~~~~~v~~~~l~~~~~g~~----------~~~~~~~f~~a~~~~~~vl~iDEi 152 (355)
T 2qp9_X 110 ---------------------------STFFSVSSSDLVSKWMGES----------EKLVKQLFAMARENKPSIIFIDQV 152 (355)
T ss_dssp ---------------------------CEEEEEEHHHHHSCC---C----------HHHHHHHHHHHHHTSSEEEEEECG
T ss_pred ---------------------------CCEEEeeHHHHhhhhcchH----------HHHHHHHHHHHHHcCCeEEEEech
Confidence 3444443322222223311 00011122222 4679999999
Q ss_pred ccCCH-----------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHh
Q 004256 234 NLLDE-----------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFE 302 (765)
Q Consensus 234 ~~L~~-----------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e 302 (765)
+.|.. .+++.|+..|+.-. ..+.+++||++||. ...++++|++||...+.+.. |+.+
T Consensus 153 d~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vI~atn~-~~~ld~al~rRf~~~i~i~~-P~~~ 220 (355)
T 2qp9_X 153 DALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLGATNI-PWQLDSAIRRRFERRIYIPL-PDLA 220 (355)
T ss_dssp GGGTC------CTHHHHHHHHHHHHHHHCC-------------CCEEEEEEESC-GGGSCHHHHHTCCEEEECCC-CCHH
T ss_pred HhhcccCCCCcchHHHHHHHHHHHHhhccc----------ccCCCeEEEeecCC-cccCCHHHHcccCEEEEeCC-cCHH
Confidence 99873 46788888887432 01236899999994 55788999999998888874 5777
Q ss_pred hHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q 004256 303 DRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLA 382 (765)
Q Consensus 303 ~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A 382 (765)
.|.+|+.... . . ....+++..++.|+..+..+ +.|.+..+++.|...|
T Consensus 221 ~r~~il~~~l---~------------------------~--~~~~~~~~~l~~la~~t~G~---sg~dl~~l~~~A~~~a 268 (355)
T 2qp9_X 221 ARTTMFEINV---G------------------------D--TPSVLTKEDYRTLGAMTEGY---SGSDIAVVVKDALMQP 268 (355)
T ss_dssp HHHHHHHHHH---T------------------------T--SCBCCCHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---h------------------------h--CCCCCCHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHH
Confidence 7777765211 0 0 01245677777776654322 5677777887777666
Q ss_pred HH
Q 004256 383 AL 384 (765)
Q Consensus 383 ~l 384 (765)
.-
T Consensus 269 ~~ 270 (355)
T 2qp9_X 269 IR 270 (355)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 56
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.62 E-value=6.9e-16 Score=168.78 Aligned_cols=220 Identities=18% Similarity=0.183 Sum_probs=136.5
Q ss_pred CCCCCCCceeechHHHHHHHHhh------------hcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGA------------IDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~------------~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
..+..|++|+|++.+++.|.-.. ......+|||+||+|||||++|++|+..+.
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--------------- 142 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG--------------- 142 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT---------------
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC---------------
Confidence 34567899999999999883222 233467899999999999999999998763
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCcee---eccCCeEecccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYIDEI 233 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~---~A~~GiL~lDEi 233 (765)
.+|+.+.+......++|.. +. ....++. ....+|||||||
T Consensus 143 ---------------------------~~~~~i~~~~l~~~~~g~~--~~--------~~~~~~~~a~~~~~~vl~iDEi 185 (357)
T 3d8b_A 143 ---------------------------ATFFSISASSLTSKWVGEG--EK--------MVRALFAVARCQQPAVIFIDEI 185 (357)
T ss_dssp ---------------------------CEEEEEEGGGGCCSSTTHH--HH--------HHHHHHHHHHHTCSEEEEEETH
T ss_pred ---------------------------CeEEEEehHHhhccccchH--HH--------HHHHHHHHHHhcCCeEEEEeCc
Confidence 3455444432222222210 00 0011122 234689999999
Q ss_pred ccCC-----------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHh
Q 004256 234 NLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFE 302 (765)
Q Consensus 234 ~~L~-----------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e 302 (765)
+.|. ..+++.|+..++... ...+.+++||++||. ...+.++|++||...+.+..| +.+
T Consensus 186 d~l~~~~~~~~~~~~~~~~~~lL~~l~~~~---------~~~~~~v~vI~atn~-~~~l~~~l~~Rf~~~i~i~~p-~~~ 254 (357)
T 3d8b_A 186 DSLLSQRGDGEHESSRRIKTEFLVQLDGAT---------TSSEDRILVVGATNR-PQEIDEAARRRLVKRLYIPLP-EAS 254 (357)
T ss_dssp HHHTBC------CHHHHHHHHHHHHHHC-------------CCCCEEEEEEESC-GGGBCHHHHTTCCEEEECCCC-CHH
T ss_pred hhhhccCCCCcchHHHHHHHHHHHHHhccc---------ccCCCCEEEEEecCC-hhhCCHHHHhhCceEEEeCCc-CHH
Confidence 8873 356778888887432 112347899999995 557889999999987778754 556
Q ss_pred hHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q 004256 303 DRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLA 382 (765)
Q Consensus 303 ~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A 382 (765)
.+.+|+...... ..+.++++.++.|+..+.. . +.+....+++.|...+
T Consensus 255 ~r~~il~~~~~~-----------------------------~~~~l~~~~l~~la~~t~G--~-s~~dl~~l~~~a~~~~ 302 (357)
T 3d8b_A 255 ARKQIVINLMSK-----------------------------EQCCLSEEEIEQIVQQSDA--F-SGADMTQLCREASLGP 302 (357)
T ss_dssp HHHHHHHHHHHT-----------------------------SCBCCCHHHHHHHHHHTTT--C-CHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHhh-----------------------------cCCCccHHHHHHHHHHcCC--C-CHHHHHHHHHHHHHHH
Confidence 666665422110 0234556666665544322 1 4455555555554443
Q ss_pred HH------------cCCCCCCHHHHHHHHHHhc
Q 004256 383 AL------------EGREKVNVDDLKKAVELVI 403 (765)
Q Consensus 383 ~l------------~gr~~Vt~edv~~A~~lvl 403 (765)
.- .....|+.+|+..|+.-+-
T Consensus 303 ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 335 (357)
T 3d8b_A 303 IRSLQTADIATITPDQVRPIAYIDFENAFRTVR 335 (357)
T ss_dssp HHHCCC----------CCCBCHHHHHHHHHHHG
T ss_pred HHHhhhhhhccccccccCCcCHHHHHHHHHhcC
Confidence 32 2345799999999998654
No 57
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.62 E-value=2.7e-16 Score=163.71 Aligned_cols=218 Identities=19% Similarity=0.182 Sum_probs=124.9
Q ss_pred CCCCceeechHHHHHHH--Hhhhc----------CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCC
Q 004256 92 FPLAAVVGQDAIKTALL--LGAID----------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~--l~~~~----------~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~ 159 (765)
..|++|+|++.+++.|. +..+. ....+|||+||||||||++|++++..+.
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~------------------ 64 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ------------------ 64 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT------------------
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC------------------
Confidence 46889999999998882 21111 2346799999999999999999998653
Q ss_pred cccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEeccccccC
Q 004256 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINLL 236 (765)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~~L 236 (765)
.+|+.+.+....+.+.|.. + ....+++..+ ..++||||||+.+
T Consensus 65 ------------------------~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~a~~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 65 ------------------------VPFLAMAGAEFVEVIGGLG--A--------ARVRSLFKEARARAPCIVYIDEIDAV 110 (262)
T ss_dssp ------------------------CCEEEEETTTTSSSSTTHH--H--------HHHHHHHHHHHHTCSEEEEEECC---
T ss_pred ------------------------CCEEEechHHHHhhccChh--H--------HHHHHHHHHHHhcCCeEEEEeCcchh
Confidence 3444444432222111110 0 0011222222 2579999999998
Q ss_pred C------------HHHHH---HHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCC
Q 004256 237 D------------EGISN---LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (765)
Q Consensus 237 ~------------~~~q~---~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~ 299 (765)
. ...+. .|+..++.-. .+.++++|+|+|. ...++++|+. ||+..+.+.. |
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-----------~~~~~~vi~~tn~-~~~ld~~l~~~~R~~~~i~i~~-p 177 (262)
T 2qz4_A 111 GKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG-----------TTDHVIVLASTNR-ADILDGALMRPGRLDRHVFIDL-P 177 (262)
T ss_dssp ----------------CHHHHHHHHHHHTCC-----------TTCCEEEEEEESC-GGGGGSGGGSTTSCCEEEECCS-C
T ss_pred hccccccccCccchhHHHHHHHHHHHhhCcC-----------CCCCEEEEecCCC-hhhcCHHHhcCCcCCeEEEeCC-c
Confidence 3 33333 4444444311 1236889999994 4567788888 9988888875 4
Q ss_pred CHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHH-HHHHHHHHHhCCCCCCChHHHHHHHH
Q 004256 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARVA 378 (765)
Q Consensus 300 ~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~-l~~l~~~a~~~g~~s~Ra~i~llr~A 378 (765)
+.+++.+|+.... .. . ++....+. ...++ ......+.|....+++.|
T Consensus 178 ~~~~r~~il~~~~---~~----------------------~----~~~~~~~~~~~~l~---~~~~g~~~~~l~~l~~~a 225 (262)
T 2qz4_A 178 TLQERREIFEQHL---KS----------------------L----KLTQSSTFYSQRLA---ELTPGFSGADIANICNEA 225 (262)
T ss_dssp CHHHHHHHHHHHH---HH----------------------T----TCCBTHHHHHHHHH---HTCTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---Hh----------------------C----CCCcchhhHHHHHH---HHCCCCCHHHHHHHHHHH
Confidence 6666666655321 11 0 11222222 23333 333333557777888888
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhcCCC
Q 004256 379 KCLAALEGREKVNVDDLKKAVELVILPR 406 (765)
Q Consensus 379 ~a~A~l~gr~~Vt~edv~~A~~lvl~hR 406 (765)
...|..+++..|+.+|+..|+..+.+.+
T Consensus 226 ~~~a~~~~~~~i~~~d~~~a~~~~~~~~ 253 (262)
T 2qz4_A 226 ALHAAREGHTSVHTLNFEYAVERVLAGT 253 (262)
T ss_dssp HTC--------CCBCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhccCh
Confidence 8888888899999999999999887654
No 58
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.62 E-value=2.6e-16 Score=169.64 Aligned_cols=199 Identities=18% Similarity=0.201 Sum_probs=126.8
Q ss_pred CCCCCCCceeechHHHHHHHHhhh------------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAI------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~------------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
.....|++|+|++.+++.|..... .....+|||+||||||||++|++|+..+.
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--------------- 76 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--------------- 76 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT---------------
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC---------------
Confidence 455679999999999999843221 11235799999999999999999998753
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceee---ccCCeEecccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDEI 233 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~---A~~GiL~lDEi 233 (765)
.+|+.+.+......++|.. ++ ....++.. ...+|||||||
T Consensus 77 ---------------------------~~~~~v~~~~l~~~~~g~~--~~--------~~~~~f~~a~~~~~~vl~iDEi 119 (322)
T 3eie_A 77 ---------------------------STFFSVSSSDLVSKWMGES--EK--------LVKQLFAMARENKPSIIFIDQV 119 (322)
T ss_dssp ---------------------------CEEEEEEHHHHHTTTGGGH--HH--------HHHHHHHHHHHTSSEEEEEECG
T ss_pred ---------------------------CCEEEEchHHHhhcccchH--HH--------HHHHHHHHHHhcCCeEEEechh
Confidence 3455544432222233311 00 00111222 23479999999
Q ss_pred ccCCH-----------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHh
Q 004256 234 NLLDE-----------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFE 302 (765)
Q Consensus 234 ~~L~~-----------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e 302 (765)
+.|.. .+++.|+..|+.-.. ...+++||++|| ....++++|++||...+.+.. |+.+
T Consensus 120 d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~----------~~~~v~vi~atn-~~~~ld~al~~Rf~~~i~~~~-p~~~ 187 (322)
T 3eie_A 120 DALTGTRGEGESEASRRIKTELLVQMNGVGN----------DSQGVLVLGATN-IPWQLDSAIRRRFERRIYIPL-PDLA 187 (322)
T ss_dssp GGGSCC------CCTHHHHHHHHHHHGGGGT----------SCCCEEEEEEES-CGGGSCHHHHHHCCEEEECCC-CCHH
T ss_pred hhhhccCCCCcchHHHHHHHHHHHHhccccc----------cCCceEEEEecC-ChhhCCHHHHcccCeEEEeCC-CCHH
Confidence 98854 567888888864320 123588999999 456689999999998887874 5777
Q ss_pred hHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q 004256 303 DRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLA 382 (765)
Q Consensus 303 ~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A 382 (765)
.|.+|+.... . . ....+++..++.|+..+..+ +.+....+++.|...|
T Consensus 188 ~r~~il~~~~---~------------------------~--~~~~~~~~~l~~la~~t~g~---sg~di~~l~~~a~~~a 235 (322)
T 3eie_A 188 ARTTMFEINV---G------------------------D--TPCVLTKEDYRTLGAMTEGY---SGSDIAVVVKDALMQP 235 (322)
T ss_dssp HHHHHHHHHH---T------------------------T--CCCCCCHHHHHHHHHTTTTC---CHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHh---c------------------------c--CCCCCCHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHH
Confidence 7777765321 0 0 12345666666665544322 5566667777665555
Q ss_pred H
Q 004256 383 A 383 (765)
Q Consensus 383 ~ 383 (765)
.
T Consensus 236 ~ 236 (322)
T 3eie_A 236 I 236 (322)
T ss_dssp H
T ss_pred H
Confidence 4
No 59
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=7.6e-16 Score=170.60 Aligned_cols=219 Identities=16% Similarity=0.159 Sum_probs=146.7
Q ss_pred CCCCceeechHHHHHHHHhhh-------------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCC
Q 004256 92 FPLAAVVGQDAIKTALLLGAI-------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~~-------------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~ 158 (765)
..|++|.|.+.+|+.|.-... .+...+|||+||||||||++|++|+..+
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~------------------ 230 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST------------------ 230 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH------------------
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh------------------
Confidence 468999999999988732111 1234679999999999999999999875
Q ss_pred CcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEecccccc
Q 004256 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINL 235 (765)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~~ 235 (765)
..+|+.+..+...+.++|.- ++. ...+|..| ...|+|||||+.
T Consensus 231 ------------------------~~~~~~v~~~~l~~~~~Ge~--e~~--------ir~lF~~A~~~aP~IifiDEiD~ 276 (428)
T 4b4t_K 231 ------------------------KAAFIRVNGSEFVHKYLGEG--PRM--------VRDVFRLARENAPSIIFIDEVDS 276 (428)
T ss_dssp ------------------------TCEEEEEEGGGTCCSSCSHH--HHH--------HHHHHHHHHHTCSEEEEEECTHH
T ss_pred ------------------------CCCeEEEecchhhccccchh--HHH--------HHHHHHHHHHcCCCeeechhhhh
Confidence 34666665554444455521 000 01122222 346999999986
Q ss_pred CC--------------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCC
Q 004256 236 LD--------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (765)
Q Consensus 236 L~--------------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~ 299 (765)
+- ..+.+.||..|+.-. ...++.||+||| ....++++|+. ||+..+.+..+|
T Consensus 277 i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~-----------~~~~v~vI~aTN-~~~~LD~AllRpGRfd~~I~~p~lP 344 (428)
T 4b4t_K 277 IATKRFDAQTGSDREVQRILIELLTQMDGFD-----------QSTNVKVIMATN-RADTLDPALLRPGRLDRKIEFPSLR 344 (428)
T ss_dssp HHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC-----------SSCSEEEEEEES-CSSSCCHHHHSSSSEEEEEECCSSC
T ss_pred hhccccCCCCCCChHHHHHHHHHHHHhhCCC-----------CCCCEEEEEecC-ChhhcChhhhcCCcceEEEEcCCCC
Confidence 51 135677777776422 123578999999 67789999998 999887774346
Q ss_pred CHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Q 004256 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (765)
Q Consensus 300 ~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~ 379 (765)
+.+.|.+|...... ......++. ++.|+..+.. .|.+....+++.|.
T Consensus 345 d~~~R~~Il~~~~~-------------------------~~~l~~~~d-----l~~lA~~t~G---~sgadi~~l~~eA~ 391 (428)
T 4b4t_K 345 DRRERRLIFGTIAS-------------------------KMSLAPEAD-----LDSLIIRNDS---LSGAVIAAIMQEAG 391 (428)
T ss_dssp CHHHHHHHHHHHHH-------------------------SSCBCTTCC-----HHHHHHHTTT---CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc-------------------------CCCCCcccC-----HHHHHHHCCC---CCHHHHHHHHHHHH
Confidence 88888888753211 001111121 4455544332 36677888899999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHhcCCCc
Q 004256 380 CLAALEGREKVNVDDLKKAVELVILPRS 407 (765)
Q Consensus 380 a~A~l~gr~~Vt~edv~~A~~lvl~hR~ 407 (765)
-.|..+++..|+.+|+.+|+..++....
T Consensus 392 ~~a~r~~~~~i~~~d~~~A~~~~~~~~~ 419 (428)
T 4b4t_K 392 LRAVRKNRYVILQSDLEEAYATQVKTDN 419 (428)
T ss_dssp HHHHHTTCSSBCHHHHHHHHHHHSCSCC
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhhCccC
Confidence 8999999999999999999987765543
No 60
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1e-15 Score=169.81 Aligned_cols=217 Identities=20% Similarity=0.195 Sum_probs=145.0
Q ss_pred CCCCCceeechHHHHHHHHhhh-------------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCC
Q 004256 91 FFPLAAVVGQDAIKTALLLGAI-------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~l~~~-------------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~ 157 (765)
...|++|.|.+.+++.|.-... .+-..+|||+||||||||++|++|+..+
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~----------------- 239 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI----------------- 239 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-----------------
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh-----------------
Confidence 4569999999999988732111 1224689999999999999999999875
Q ss_pred CCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEeccccc
Q 004256 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEIN 234 (765)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~ 234 (765)
..+|+.+..+...+.++|.- ++ ....++..| ...|||||||+
T Consensus 240 -------------------------~~~~~~v~~s~l~sk~~Ges--e~--------~ir~~F~~A~~~~P~IifiDEiD 284 (437)
T 4b4t_L 240 -------------------------GANFIFSPASGIVDKYIGES--AR--------IIREMFAYAKEHEPCIIFMDEVD 284 (437)
T ss_dssp -------------------------TCEEEEEEGGGTCCSSSSHH--HH--------HHHHHHHHHHHSCSEEEEEECCC
T ss_pred -------------------------CCCEEEEehhhhccccchHH--HH--------HHHHHHHHHHhcCCceeeeeccc
Confidence 34666665554444444421 00 001112222 35699999999
Q ss_pred cCCH--------------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCC
Q 004256 235 LLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (765)
Q Consensus 235 ~L~~--------------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p 298 (765)
.+-. .+...||..|+.-. ...+++||+||| ....++++|+. ||+..+.+.+
T Consensus 285 ai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~vivI~ATN-rp~~LDpAllRpGRfD~~I~i~l- 351 (437)
T 4b4t_L 285 AIGGRRFSEGTSADREIQRTLMELLTQMDGFD-----------NLGQTKIIMATN-RPDTLDPALLRPGRLDRKVEIPL- 351 (437)
T ss_dssp SSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS-----------CTTSSEEEEEES-STTSSCTTTTSTTSEEEEECCCC-
T ss_pred ccccccccCCCCcchHHHHHHHHHHHHhhccc-----------CCCCeEEEEecC-CchhhCHHHhCCCccceeeecCC-
Confidence 7731 24566777776432 113578999999 67788999987 4999988885
Q ss_pred CCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 004256 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (765)
Q Consensus 299 ~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A 378 (765)
|+.+.|.+|+..... ......++. ++.|+. .....|.+....+++.|
T Consensus 352 Pd~~~R~~Il~~~~~-------------------------~~~~~~d~d-----l~~lA~---~t~G~sGADi~~l~~eA 398 (437)
T 4b4t_L 352 PNEAGRLEIFKIHTA-------------------------KVKKTGEFD-----FEAAVK---MSDGFNGADIRNCATEA 398 (437)
T ss_dssp CCHHHHHHHHHHHHH-------------------------TSCBCSCCC-----HHHHHH---TCCSCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhc-------------------------CCCCCcccC-----HHHHHH---hCCCCCHHHHHHHHHHH
Confidence 588888888753211 011111221 334433 33333667788899999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhcCC
Q 004256 379 KCLAALEGREKVNVDDLKKAVELVILP 405 (765)
Q Consensus 379 ~a~A~l~gr~~Vt~edv~~A~~lvl~h 405 (765)
...|..+++..|+.+|+..|+.-+..-
T Consensus 399 ~~~air~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 399 GFFAIRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999877543
No 61
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.61 E-value=4.8e-16 Score=172.37 Aligned_cols=217 Identities=20% Similarity=0.189 Sum_probs=145.9
Q ss_pred CCCCCCceeechHHHHHHHHhhh-------------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALLLGAI-------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~~-------------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
....|++|.|.+.+|+.|.-..+ .+...+|||+||||||||++|++|+..+
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---------------- 239 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---------------- 239 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------------
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh----------------
Confidence 34579999999999998832211 1235689999999999999999999875
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEecccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi 233 (765)
..+|+.+..+...+.++|.- ++ ...-++..| ...|||||||
T Consensus 240 --------------------------~~~f~~v~~s~l~~~~vGes--e~--------~ir~lF~~A~~~aP~IifiDEi 283 (434)
T 4b4t_M 240 --------------------------NATFLKLAAPQLVQMYIGEG--AK--------LVRDAFALAKEKAPTIIFIDEL 283 (434)
T ss_dssp --------------------------TCEEEEEEGGGGCSSCSSHH--HH--------HHHHHHHHHHHHCSEEEEEECT
T ss_pred --------------------------CCCEEEEehhhhhhcccchH--HH--------HHHHHHHHHHhcCCeEEeecch
Confidence 34666665554444455521 00 001122222 3469999999
Q ss_pred ccCC-----------HH---HHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecC
Q 004256 234 NLLD-----------EG---ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (765)
Q Consensus 234 ~~L~-----------~~---~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~ 297 (765)
+.+- .. +...||..|+.-. ...++.||+||| ....++++|+. ||+..+.+.+
T Consensus 284 Dal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~-----------~~~~ViVIaaTN-rp~~LD~AllRpGRfD~~I~i~l 351 (434)
T 4b4t_M 284 DAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS-----------SDDRVKVLAATN-RVDVLDPALLRSGRLDRKIEFPL 351 (434)
T ss_dssp HHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC-----------SSCSSEEEEECS-SCCCCCTTTCSTTSEEEEEECCC
T ss_pred hhhhhccCCCCCCCchHHHHHHHHHHHHhhccC-----------CCCCEEEEEeCC-CchhcCHhHhcCCceeEEEEeCC
Confidence 8761 12 3456666665321 112578999999 67789999988 9999998885
Q ss_pred CCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHH
Q 004256 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARV 377 (765)
Q Consensus 298 p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~ 377 (765)
|+.+.|.+|+..... ......++. ++.|+..+ ...|.+....+++.
T Consensus 352 -Pd~~~R~~Il~~~~~-------------------------~~~~~~dvd-----l~~lA~~t---~G~sGADi~~l~~e 397 (434)
T 4b4t_M 352 -PSEDSRAQILQIHSR-------------------------KMTTDDDIN-----WQELARST---DEFNGAQLKAVTVE 397 (434)
T ss_dssp -CCHHHHHHHHHHHHH-------------------------HSCBCSCCC-----HHHHHHHC---SSCCHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHhc-------------------------CCCCCCcCC-----HHHHHHhC---CCCCHHHHHHHHHH
Confidence 588888888763211 011111221 34444433 33366778888999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcC
Q 004256 378 AKCLAALEGREKVNVDDLKKAVELVIL 404 (765)
Q Consensus 378 A~a~A~l~gr~~Vt~edv~~A~~lvl~ 404 (765)
|...|.-+++..|+.+|+.+|+..+.+
T Consensus 398 A~~~a~r~~~~~i~~~Df~~Al~~v~~ 424 (434)
T 4b4t_M 398 AGMIALRNGQSSVKHEDFVEGISEVQA 424 (434)
T ss_dssp HHHHHHHHTCSSBCHHHHHHHHHSCSS
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHhC
Confidence 988998899999999999999987654
No 62
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.61 E-value=7e-17 Score=169.14 Aligned_cols=222 Identities=20% Similarity=0.274 Sum_probs=139.0
Q ss_pred CCCCCCceeechHHHHHHH--Hhhh----------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALL--LGAI----------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~--l~~~----------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~ 157 (765)
..+.|++|+|++.+++.|. +..+ .....+|||+||||||||++|++|+..+.
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~---------------- 69 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH---------------- 69 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT----------------
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC----------------
Confidence 4567899999999888873 2211 12246799999999999999999998753
Q ss_pred CCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeecc---CCeEeccccc
Q 004256 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEIN 234 (765)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~---~GiL~lDEi~ 234 (765)
.+|+.+.+....+.+.|. +. ....+++..+. .++|||||++
T Consensus 70 --------------------------~~~~~v~~~~~~~~~~~~---------~~-~~~~~~~~~a~~~~~~vl~iDEid 113 (268)
T 2r62_A 70 --------------------------VPFFSMGGSSFIEMFVGL---------GA-SRVRDLFETAKKQAPSIIFIDEID 113 (268)
T ss_dssp --------------------------CCCCCCCSCTTTTSCSSS---------CS-SSSSTTHHHHHHSCSCEEEESCGG
T ss_pred --------------------------CCEEEechHHHHHhhcch---------HH-HHHHHHHHHHHhcCCeEEEEeChh
Confidence 233333333322233331 11 11123444433 3799999999
Q ss_pred cCCHH---------------HHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecC
Q 004256 235 LLDEG---------------ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (765)
Q Consensus 235 ~L~~~---------------~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~ 297 (765)
.|... .++.|+..++.-. ....++++|+|+|.. ..++++++. ||+..+.+..
T Consensus 114 ~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vi~ttn~~-~~ld~~l~r~~Rf~~~i~i~~ 182 (268)
T 2r62_A 114 AIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG----------SENAPVIVLAATNRP-EILDPALMRPGRFDRQVLVDK 182 (268)
T ss_dssp GTTC----------CCCSCSSTTTTTTTTTCSS----------CSCSCCEEEECBSCC-TTSCGGGGSSSSSCCCCBCCC
T ss_pred hhcccccccccCCCchhHHHHHHHHHHHhhCcc----------cCCCCEEEEEecCCc-hhcCHhHcCCCCCCeEEEecC
Confidence 99754 3455666554311 012358899999954 567888888 9988888885
Q ss_pred CCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHH
Q 004256 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARV 377 (765)
Q Consensus 298 p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~ 377 (765)
| +.++|.+|+.. +... ......+. ++.++..+ .|. +.|....+++.
T Consensus 183 p-~~~~r~~il~~---~~~~----------------------~~~~~~~~-----~~~la~~~--~g~-~g~dl~~l~~~ 228 (268)
T 2r62_A 183 P-DFNGRVEILKV---HIKG----------------------VKLANDVN-----LQEVAKLT--AGL-AGADLANIINE 228 (268)
T ss_dssp C-CTTTHHHHHHH---HTSS----------------------SCCCSSCC-----TTTTTSSS--CSS-CHHHHHHHHHH
T ss_pred c-CHHHHHHHHHH---HHhc----------------------CCCCCccC-----HHHHHHHc--CCC-CHHHHHHHHHH
Confidence 5 55556666542 1110 00111111 12222221 122 45777888898
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcCCCcC
Q 004256 378 AKCLAALEGREKVNVDDLKKAVELVILPRSI 408 (765)
Q Consensus 378 A~a~A~l~gr~~Vt~edv~~A~~lvl~hR~~ 408 (765)
|...|...+...|+.+|+.+|+..+.+++.+
T Consensus 229 a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~~ 259 (268)
T 2r62_A 229 AALLAGRNNQKEVRQQHLKEAVERGIAGLEK 259 (268)
T ss_dssp HHHTTSSSCCCSCCHHHHHTSCTTCCCCCC-
T ss_pred HHHHHHHhccCCcCHHHHHHHHHHHhhcchh
Confidence 8888888888899999999999988888765
No 63
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.61 E-value=2.1e-15 Score=160.32 Aligned_cols=221 Identities=17% Similarity=0.180 Sum_probs=138.1
Q ss_pred CCCCCCCceeechHHHHHHHHhh------------hcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGA------------IDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~------------~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
.....|++|+|++.+++.|.-.. +.....+|||+||||||||++|++++..+.
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~--------------- 79 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS--------------- 79 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT---------------
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC---------------
Confidence 34567899999999999884222 122357899999999999999999999763
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccC
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL 236 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L 236 (765)
.+|+.+.+........|.. +.. .............++||||||+.+
T Consensus 80 ---------------------------~~~~~i~~~~l~~~~~~~~--~~~-----~~~~~~~~~~~~~~vl~iDEid~l 125 (297)
T 3b9p_A 80 ---------------------------ATFLNISAASLTSKYVGDG--EKL-----VRALFAVARHMQPSIIFIDEVDSL 125 (297)
T ss_dssp ---------------------------CEEEEEESTTTSSSSCSCH--HHH-----HHHHHHHHHHTCSEEEEEETGGGT
T ss_pred ---------------------------CCeEEeeHHHHhhcccchH--HHH-----HHHHHHHHHHcCCcEEEeccHHHh
Confidence 2444444433222222210 000 000001112234689999999887
Q ss_pred C-----------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHH
Q 004256 237 D-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRV 305 (765)
Q Consensus 237 ~-----------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~ 305 (765)
. ..+++.|+..++.... .. ...++++|+++| ....+.+++++||...+.+.. |+.+.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~------~~~~v~vi~~tn-~~~~l~~~l~~R~~~~i~~~~-p~~~~r~ 195 (297)
T 3b9p_A 126 LSERSSSEHEASRRLKTEFLVEFDGLPG--NP------DGDRIVVLAATN-RPQELDEAALRRFTKRVYVSL-PDEQTRE 195 (297)
T ss_dssp SBCC-----CCSHHHHHHHHHHHHHCC--------------CEEEEEEES-CGGGBCHHHHHHCCEEEECCC-CCHHHHH
T ss_pred ccccccCcchHHHHHHHHHHHHHhcccc--cC------CCCcEEEEeecC-ChhhCCHHHHhhCCeEEEeCC-cCHHHHH
Confidence 3 4677888888876431 11 113578999999 455788999999988877774 4666666
Q ss_pred HHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHc
Q 004256 306 AAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALE 385 (765)
Q Consensus 306 dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~ 385 (765)
+|+..... . .+..++++.++.++..+. |. +.+....+++.|...|.-+
T Consensus 196 ~il~~~~~-------------------------~----~~~~~~~~~~~~la~~~~--g~-~~~~l~~l~~~a~~~a~r~ 243 (297)
T 3b9p_A 196 LLLNRLLQ-------------------------K----QGSPLDTEALRRLAKITD--GY-SGSDLTALAKDAALEPIRE 243 (297)
T ss_dssp HHHHHHHG-------------------------G----GSCCSCHHHHHHHHHHTT--TC-CHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHH-------------------------h----cCCCCCHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHHHHHH
Confidence 66542210 0 023466777777765542 22 3445557777776666543
Q ss_pred C------------CCCCCHHHHHHHHH
Q 004256 386 G------------REKVNVDDLKKAVE 400 (765)
Q Consensus 386 g------------r~~Vt~edv~~A~~ 400 (765)
. ...|+.+|+..|+.
T Consensus 244 ~~~~~~~~~~~~~~~~i~~~d~~~a~~ 270 (297)
T 3b9p_A 244 LNVEQVKCLDISAMRAITEQDFHSSLK 270 (297)
T ss_dssp CC--------CCCCCCCCHHHHHHHTT
T ss_pred HhhhhcccccccccCCcCHHHHHHHHH
Confidence 3 35799999988875
No 64
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.58 E-value=1.5e-15 Score=170.96 Aligned_cols=217 Identities=25% Similarity=0.298 Sum_probs=140.3
Q ss_pred CCCCCCceeechHHHHHHH--Hhhh-c---------CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALL--LGAI-D---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~--l~~~-~---------~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~ 157 (765)
....|++|+|++.+|..|. +..+ . ....+|||+||||||||++||+|+..+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~----------------- 73 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA----------------- 73 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH-----------------
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc-----------------
Confidence 3467899999999988872 1111 1 124579999999999999999999864
Q ss_pred CCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeecc---CCeEeccccc
Q 004256 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEIN 234 (765)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~---~GiL~lDEi~ 234 (765)
..||+.+++....+.++|. +. .....++..|. ..|||||||+
T Consensus 74 -------------------------~~~f~~is~~~~~~~~~g~---------~~-~~~r~lf~~A~~~~p~ILfIDEid 118 (476)
T 2ce7_A 74 -------------------------NVPFFHISGSDFVELFVGV---------GA-ARVRDLFAQAKAHAPCIVFIDEID 118 (476)
T ss_dssp -------------------------TCCEEEEEGGGTTTCCTTH---------HH-HHHHHHHHHHHHTCSEEEEEETGG
T ss_pred -------------------------CCCeeeCCHHHHHHHHhcc---------cH-HHHHHHHHHHHhcCCCEEEEechh
Confidence 2456555444333333331 10 11223455443 3599999999
Q ss_pred cCCH--------------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCC
Q 004256 235 LLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (765)
Q Consensus 235 ~L~~--------------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p 298 (765)
.+.. .+++.|+..|+.-. .+.+++||++||. ...++++|+. ||+..+.+..
T Consensus 119 ~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~-----------~~~~viVIaaTn~-~~~Ld~allR~gRFd~~i~i~~- 185 (476)
T 2ce7_A 119 AVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD-----------SKEGIIVMAATNR-PDILDPALLRPGRFDKKIVVDP- 185 (476)
T ss_dssp GTCCC---------CHHHHHHHHHHHHHHHSC-----------GGGTEEEEEEESC-GGGSCGGGGSTTSSCEEEECCC-
T ss_pred hhhhhcccccCcCcHHHHHHHHHHHHHHhccC-----------CCCCEEEEEecCC-hhhhchhhcccCcceeEeecCC-
Confidence 8854 36788888886311 1236899999995 4567788886 9998888885
Q ss_pred CCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 004256 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (765)
Q Consensus 299 ~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A 378 (765)
|+.+.|.+|+.. +... ..+..++. ++.+ +......+.|.+.++++.|
T Consensus 186 Pd~~~R~~Il~~---~~~~----------------------~~l~~~v~-----l~~l---a~~t~G~sgadL~~lv~~A 232 (476)
T 2ce7_A 186 PDMLGRKKILEI---HTRN----------------------KPLAEDVN-----LEII---AKRTPGFVGADLENLVNEA 232 (476)
T ss_dssp CCHHHHHHHHHH---HHTT----------------------SCBCTTCC-----HHHH---HHTCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH---HHHh----------------------CCCcchhh-----HHHH---HHhcCCCcHHHHHHHHHHH
Confidence 566677777642 2111 00111111 2222 2222222446777888888
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhcC
Q 004256 379 KCLAALEGREKVNVDDLKKAVELVIL 404 (765)
Q Consensus 379 ~a~A~l~gr~~Vt~edv~~A~~lvl~ 404 (765)
...|...+...|+.+|+.+|+..++.
T Consensus 233 al~A~~~~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 233 ALLAAREGRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHHHHC-
T ss_pred HHHHHHcCCCeecHHHHHHHHHHHhc
Confidence 88888888899999999999998764
No 65
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.57 E-value=5.3e-15 Score=177.65 Aligned_cols=221 Identities=19% Similarity=0.178 Sum_probs=139.5
Q ss_pred CceeechHHHHHHHHh--hhc-------CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccc
Q 004256 95 AAVVGQDAIKTALLLG--AID-------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (765)
Q Consensus 95 ~~ivG~~~~~~aL~l~--~~~-------~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (765)
..|+|++.++..+..+ ... ...+++||+||+|||||++|++++..+.. ....++|..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~----~~~~i~~s~---------- 523 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI----ELLRFDMSE---------- 523 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC----EEEEEEGGG----------
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC----CEEEEechh----------
Confidence 3589999988777221 111 11247999999999999999999998741 111122200
Q ss_pred cccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCC--CcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGT--TVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~--~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
+....+..+++|.- .+ +.|. .....+.+..+.++|||||||+.+++++++.
T Consensus 524 -----------------------~~~~~~~~~l~g~~---~g-~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~ 576 (758)
T 1r6b_X 524 -----------------------YMERHTVSRLIGAP---PG-YVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNI 576 (758)
T ss_dssp -----------------------CSSSSCCSSSCCCC---SC-SHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHH
T ss_pred -----------------------hcchhhHhhhcCCC---CC-CcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHH
Confidence 11112234555531 00 0010 0011234556778999999999999999999
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC------------------------CCcchHHHhhhhcceeecCCC
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE------------------------GVVREHLLDRIAINLSADLPM 299 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e------------------------g~l~~~L~dRf~~~v~i~~p~ 299 (765)
|+++|++|.++. ..|..... .++++|+|||+.. +.|+++|++||+.++.+. |+
T Consensus 577 Ll~~le~~~~~~-~~g~~~~~-~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~-~l 653 (758)
T 1r6b_X 577 LLQVMDNGTLTD-NNGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFD-HL 653 (758)
T ss_dssp HHHHHHHSEEEE-TTTEEEEC-TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECC-CC
T ss_pred HHHHhcCcEEEc-CCCCEEec-CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeC-CC
Confidence 999999998543 23333333 6789999999732 268899999998776665 45
Q ss_pred CHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Q 004256 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (765)
Q Consensus 300 ~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~ 379 (765)
..+....|+ ..++...... +..+. -.+.++++++++|++.++..+. +.|.+..+++.+.
T Consensus 654 ~~~~~~~i~---~~~l~~~~~~---------------~~~~~--~~~~~~~~a~~~l~~~~~~~~~-g~R~l~~~i~~~~ 712 (758)
T 1r6b_X 654 STDVIHQVV---DKFIVELQVQ---------------LDQKG--VSLEVSQEARNWLAEKGYDRAM-GARPMARVIQDNL 712 (758)
T ss_dssp CHHHHHHHH---HHHHHHHHHH---------------HHHTT--EEEEECHHHHHHHHHHHCBTTT-BTTTHHHHHHHHH
T ss_pred CHHHHHHHH---HHHHHHHHHH---------------HHHCC--cEEEeCHHHHHHHHHhCCCcCC-CchHHHHHHHHHH
Confidence 555444444 4444332211 11111 1367889999999988877655 6899888877654
Q ss_pred H
Q 004256 380 C 380 (765)
Q Consensus 380 a 380 (765)
.
T Consensus 713 ~ 713 (758)
T 1r6b_X 713 K 713 (758)
T ss_dssp T
T ss_pred H
Confidence 3
No 66
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.56 E-value=1.7e-14 Score=155.44 Aligned_cols=157 Identities=22% Similarity=0.236 Sum_probs=104.2
Q ss_pred CCCCCCceeechHHHHHHHHhhh------------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALLLGAI------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~~------------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~ 157 (765)
....|++|+|++.+++.|.-... .....+|||+||||||||++|++++..+.
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~---------------- 70 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---------------- 70 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT----------------
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC----------------
Confidence 44678999999999998842221 11236799999999999999999999763
Q ss_pred CCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCcee---eccCCeEeccccc
Q 004256 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYIDEIN 234 (765)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~---~A~~GiL~lDEi~ 234 (765)
..+|+.+.+......++|.. ++ ....++. ....+|||||||+
T Consensus 71 -------------------------~~~~~~i~~~~l~~~~~g~~--~~--------~~~~lf~~a~~~~~~vl~iDEid 115 (322)
T 1xwi_A 71 -------------------------NSTFFSISSSDLVSKWLGES--EK--------LVKNLFQLARENKPSIIFIDEID 115 (322)
T ss_dssp -------------------------SCEEEEEECCSSCCSSCCSC--HH--------HHHHHHHHHHHTSSEEEEEETTT
T ss_pred -------------------------CCcEEEEEhHHHHhhhhhHH--HH--------HHHHHHHHHHhcCCcEEEeecHH
Confidence 23454444433222333310 00 0011111 2345799999999
Q ss_pred cCC-----------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhh
Q 004256 235 LLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFED 303 (765)
Q Consensus 235 ~L~-----------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~ 303 (765)
.+. ..+++.|+..|+.-.. .+.+++||++|| ....++++|++||...+.+.. |+.+.
T Consensus 116 ~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~----------~~~~v~vI~atn-~~~~ld~al~rRf~~~i~i~~-P~~~~ 183 (322)
T 1xwi_A 116 SLCGSRSENESEAARRIKTEFLVQMQGVGV----------DNDGILVLGATN-IPWVLDSAIRRRFEKRIYIPL-PEPHA 183 (322)
T ss_dssp GGGCCSSSCCTTHHHHHHHHHHHHHHCSSS----------CCTTEEEEEEES-CTTTSCHHHHHTCCEEEECCC-CCHHH
T ss_pred HhccccccccchHHHHHHHHHHHHHhcccc----------cCCCEEEEEecC-CcccCCHHHHhhcCeEEEeCC-cCHHH
Confidence 882 2567778888764220 124689999999 456789999999998888874 57777
Q ss_pred HHHHHH
Q 004256 304 RVAAVG 309 (765)
Q Consensus 304 r~dI~~ 309 (765)
|.+|+.
T Consensus 184 r~~il~ 189 (322)
T 1xwi_A 184 RAAMFK 189 (322)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 67
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.55 E-value=1.8e-14 Score=162.11 Aligned_cols=200 Identities=19% Similarity=0.165 Sum_probs=124.4
Q ss_pred CCCCCCCceeechHHHHHHHHhhh------------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAI------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~------------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
.....|++|+|++.+++.|..... .....+|||+||||||||++|++|+..+.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--------------- 192 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--------------- 192 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC---------------
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC---------------
Confidence 445679999999999998843221 12346799999999999999999999863
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCcee---eccCCeEecccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYIDEI 233 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~---~A~~GiL~lDEi 233 (765)
..+|+.+.+......++|.. ......++. ....+|||||||
T Consensus 193 --------------------------~~~~~~v~~~~l~~~~~g~~----------~~~~~~~f~~a~~~~~~vl~iDEi 236 (444)
T 2zan_A 193 --------------------------NSTFFSISSSDLVSKWLGES----------EKLVKNLFQLARENKPSIIFIDEI 236 (444)
T ss_dssp --------------------------SSEEEEECCC---------C----------CCTHHHHHHHHHHSCSEEEEESCT
T ss_pred --------------------------CCCEEEEeHHHHHhhhcchH----------HHHHHHHHHHHHHcCCeEEEEech
Confidence 23455555543333333321 000011122 234579999999
Q ss_pred ccCC-----------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHh
Q 004256 234 NLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFE 302 (765)
Q Consensus 234 ~~L~-----------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e 302 (765)
+.|. ..+++.||..|+.-. ..+.+++||+|||. ...++++|++||...+.+.. |+.+
T Consensus 237 d~l~~~~~~~~~~~~~~~~~~lL~~l~~~~----------~~~~~v~vI~atn~-~~~ld~al~rRf~~~i~i~~-P~~~ 304 (444)
T 2zan_A 237 DSLCGSRSENESEAARRIKTEFLVQMQGVG----------VDNDGILVLGATNI-PWVLDSAIRRRFEKRIYIPL-PEAH 304 (444)
T ss_dssp TTTCCCSSCCCCGGGHHHHHHHHTTTTCSS----------CCCSSCEEEEEESC-GGGSCHHHHTTCCEEEECCC-CCHH
T ss_pred HhhccCCCCccccHHHHHHHHHHHHHhCcc----------cCCCCEEEEecCCC-ccccCHHHHhhcceEEEeCC-cCHH
Confidence 9882 356777777665421 01346899999994 46788999999998877874 5677
Q ss_pred hHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q 004256 303 DRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLA 382 (765)
Q Consensus 303 ~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A 382 (765)
.|.+|+.... . . ....+++..++.|+..+..+ +.+.+..+++.|...|
T Consensus 305 ~r~~il~~~l---~------------------------~--~~~~l~~~~l~~la~~t~G~---sgadl~~l~~~a~~~a 352 (444)
T 2zan_A 305 ARAAMFRLHL---G------------------------S--TQNSLTEADFQELGRKTDGY---SGADISIIVRDALMQP 352 (444)
T ss_dssp HHHHHHHHHH---T------------------------T--SCEECCHHHHHHHHHHTTTC---CHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHH---h------------------------c--CCCCCCHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHH
Confidence 7777765311 0 0 01345666667776554322 5566667776666544
Q ss_pred H
Q 004256 383 A 383 (765)
Q Consensus 383 ~ 383 (765)
.
T Consensus 353 ~ 353 (444)
T 2zan_A 353 V 353 (444)
T ss_dssp H
T ss_pred H
Confidence 3
No 68
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.54 E-value=5.5e-15 Score=157.74 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=105.1
Q ss_pred CCCCCCceeechHHHHHHHHhhh-------------cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALLLGAI-------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~~-------------~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
....|++|+|++.+++.|.-... .+...+|||+||||||||++|++|+..+.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--------------- 74 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--------------- 74 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT---------------
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC---------------
Confidence 45678999999999998832221 13456799999999999999999999763
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEecccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi 233 (765)
.+|+.+.+......++|.. .....+++..+ ..++||||||
T Consensus 75 ---------------------------~~~i~v~~~~l~~~~~g~~----------~~~~~~~f~~a~~~~p~il~iDEi 117 (301)
T 3cf0_A 75 ---------------------------ANFISIKGPELLTMWFGES----------EANVREIFDKARQAAPCVLFFDEL 117 (301)
T ss_dssp ---------------------------CEEEEECHHHHHHHHHTTC----------TTHHHHHHHHHHHTCSEEEEECST
T ss_pred ---------------------------CCEEEEEhHHHHhhhcCch----------HHHHHHHHHHHHhcCCeEEEEECh
Confidence 3455544332222333321 01112334433 2479999999
Q ss_pred ccCCHH--------------HHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecC
Q 004256 234 NLLDEG--------------ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (765)
Q Consensus 234 ~~L~~~--------------~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~ 297 (765)
+.+... +++.||..|+.-. ...+++||++||. ...++++++. ||...+.+..
T Consensus 118 d~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~-----------~~~~v~vi~atn~-~~~ld~al~r~gRf~~~i~i~~ 185 (301)
T 3cf0_A 118 DSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVFIIGATNR-PDIIDPAILRPGRLDQLIYIPL 185 (301)
T ss_dssp THHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-----------TTSSEEEEEEESC-GGGSCGGGGSTTSSCEEEECCC
T ss_pred HHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-----------CCCCEEEEEecCC-ccccChHHhcCCccceEEecCC
Confidence 987543 5788999887421 1246899999994 4567888888 9998888875
Q ss_pred CCCHhhHHHHHH
Q 004256 298 PMTFEDRVAAVG 309 (765)
Q Consensus 298 p~~~e~r~dI~~ 309 (765)
|+.+.|.+|+.
T Consensus 186 -p~~~~r~~il~ 196 (301)
T 3cf0_A 186 -PDEKSRVAILK 196 (301)
T ss_dssp -CCHHHHHHHHH
T ss_pred -cCHHHHHHHHH
Confidence 46677777764
No 69
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.53 E-value=5.4e-15 Score=167.38 Aligned_cols=217 Identities=22% Similarity=0.267 Sum_probs=136.2
Q ss_pred CCCCCCceeechHHHHHHH--Hhhh-cC---------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALL--LGAI-DR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~--l~~~-~~---------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~ 157 (765)
....|++|+|++.++..+. +..+ .+ ...+|||+||||||||++|++|+..+.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~---------------- 89 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---------------- 89 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT----------------
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC----------------
Confidence 4578999999999988872 1111 11 134699999999999999999998763
Q ss_pred CCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeecc---CCeEeccccc
Q 004256 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEIN 234 (765)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~---~GiL~lDEi~ 234 (765)
.+|+.+.+....+.++|.. ++ ....++..+. .+++|||||+
T Consensus 90 --------------------------~~~i~i~g~~~~~~~~g~~--~~--------~v~~lfq~a~~~~p~il~IDEId 133 (499)
T 2dhr_A 90 --------------------------VPFITASGSDFVEMFVGVG--AA--------RVRDLFETAKRHAPCIVFIDEID 133 (499)
T ss_dssp --------------------------CCEEEEEGGGGTSSCTTHH--HH--------HHHHHTTTSSSSSSCEEEEECGG
T ss_pred --------------------------CCEEEEehhHHHHhhhhhH--HH--------HHHHHHHHHHhcCCCEEEEehHH
Confidence 3444443332222222210 00 0011222222 3799999998
Q ss_pred cCCH--------------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCC
Q 004256 235 LLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (765)
Q Consensus 235 ~L~~--------------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p 298 (765)
.+.. ..++.|+..|+.+. ....+++|+++|. +..++++|+. ||+..+.+..|
T Consensus 134 ~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-----------~~~~viviAatn~-p~~LD~aLlr~gRfdr~i~i~~P 201 (499)
T 2dhr_A 134 AVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATNR-PDILDPALLRPGRFDRQIAIDAP 201 (499)
T ss_dssp GTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----------SSCCCEEEECCSC-GGGSCTTTSSTTSSCCEEECCCC
T ss_pred HHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-----------cCccEEEEEecCC-hhhcCcccccccccceEEecCCC
Confidence 8742 35567777776543 1235788999994 3458888887 89888888854
Q ss_pred CCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHH-HHHHHHHHHhCCCCCCChHHHHHHH
Q 004256 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARV 377 (765)
Q Consensus 299 ~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~-l~~l~~~a~~~g~~s~Ra~i~llr~ 377 (765)
+.+.|.+|+.. +.. ++.+++++ +..+ +......+.|.+.++++.
T Consensus 202 -d~~~R~~IL~~---~~~----------------------------~~~l~~dv~l~~l---A~~t~G~~gadL~~lv~~ 246 (499)
T 2dhr_A 202 -DVKGREQILRI---HAR----------------------------GKPLAEDVDLALL---AKRTPGFVGADLENLLNE 246 (499)
T ss_dssp -CHHHHHHHHHH---TTS----------------------------SSCCCCSSTTHHH---HTTSCSCCHHHHHHHHHH
T ss_pred -CHHHHHHHHHH---HHh----------------------------cCCCChHHHHHHH---HHhcCCCCHHHHHHHHHH
Confidence 66667777642 110 11122111 2222 222222244777788888
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcCC
Q 004256 378 AKCLAALEGREKVNVDDLKKAVELVILP 405 (765)
Q Consensus 378 A~a~A~l~gr~~Vt~edv~~A~~lvl~h 405 (765)
|..+|...+...|+.+|+.+|+..++..
T Consensus 247 Aa~~A~~~~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 247 AALLAAREGRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp HHHHHTTTCCSSCCSHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCccCHHHHHHHHHHHhcc
Confidence 8888888888899999999999988765
No 70
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.52 E-value=1.1e-14 Score=167.80 Aligned_cols=236 Identities=20% Similarity=0.217 Sum_probs=127.8
Q ss_pred CceeechHHHHHHH----HhhhcC--CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccc
Q 004256 95 AAVVGQDAIKTALL----LGAIDR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (765)
Q Consensus 95 ~~ivG~~~~~~aL~----l~~~~~--~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (765)
.+++|++.+++.+. +..+.. ...++||+||||||||++||+|+..+..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~-------------------------- 134 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR-------------------------- 134 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC--------------------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC--------------------------
Confidence 34899999888772 222222 2446999999999999999999998742
Q ss_pred ccccccCcccccccCCCeEeCCCCC--cccceeeecccccccccCCCccc-CCceeec--cCCeEeccccccCCHH----
Q 004256 169 AEYDTAGNLKTQIARSPFVQIPLGV--TEDRLIGSVDVEESVKTGTTVFQ-PGLLAEA--HRGVLYIDEINLLDEG---- 239 (765)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~l~~~~--~e~~L~G~~d~e~~~~~g~~~~~-~Gll~~A--~~GiL~lDEi~~L~~~---- 239 (765)
+|+.+.++. .+..++|+.. .+.|..... ...+..+ +++|||||||+.++..
T Consensus 135 ----------------~~~~i~~~~~~~~~~~~g~~~----~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~ 194 (543)
T 3m6a_A 135 ----------------KFVRISLGGVRDESEIRGHRR----TYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGD 194 (543)
T ss_dssp ----------------EEEEECCCC------------------------CHHHHHHTTCSSSEEEEEEESSSCC------
T ss_pred ----------------CeEEEEecccchhhhhhhHHH----HHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccC
Confidence 233333221 1223344210 011111000 0012222 6779999999999988
Q ss_pred HHHHHHHHHHcCceE-EEeCCeeEEee-CceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHh
Q 004256 240 ISNLLLNVLTEGVNI-VEREGISFKHP-CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER 317 (765)
Q Consensus 240 ~q~~Ll~~l~~~~~~-v~r~G~~~~~p-~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~ 317 (765)
.++.||++|+.+.+. +...+.....+ .++++|+|+|+ ...++++|++||.+ +.+. +++.+++.+|+.. ++...
T Consensus 195 ~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~-~~~l~~aL~~R~~v-i~~~-~~~~~e~~~Il~~--~l~~~ 269 (543)
T 3m6a_A 195 PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANN-LATIPGPLRDRMEI-INIA-GYTEIEKLEIVKD--HLLPK 269 (543)
T ss_dssp ---CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSS-TTTSCHHHHHHEEE-EECC-CCCHHHHHHHHHH--THHHH
T ss_pred HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCc-cccCCHHHHhhcce-eeeC-CCCHHHHHHHHHH--HHHHH
Confidence 559999999865532 22333333333 57899999994 56889999999975 4676 4566766666543 22222
Q ss_pred hHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHc------CCCCCC
Q 004256 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALE------GREKVN 391 (765)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~------gr~~Vt 391 (765)
.....+.. ..++.+++++++.++..+... .+.|.+.+.++.+...|+.. +...|+
T Consensus 270 ~~~~~~~~-----------------~~~i~i~~~~l~~l~~~~~~~--~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It 330 (543)
T 3m6a_A 270 QIKEHGLK-----------------KSNLQLRDQAILDIIRYYTRE--AGVRSLERQLAAICRKAAKAIVAEERKRITVT 330 (543)
T ss_dssp HHHHTTCC-----------------GGGCEECHHHHHHHHHHHCCC--SSSHHHHHHHHHHHHHHHHHHHTTCCSCCEEC
T ss_pred HHHHcCCC-----------------cccccCCHHHHHHHHHhCChh--hchhHHHHHHHHHHHHHHHHHHhcCCcceecC
Confidence 22211111 123455555555555432221 13455555444444333322 344688
Q ss_pred HHHHHHHHH
Q 004256 392 VDDLKKAVE 400 (765)
Q Consensus 392 ~edv~~A~~ 400 (765)
.+|+.+++.
T Consensus 331 ~~~l~~~Lg 339 (543)
T 3m6a_A 331 EKNLQDFIG 339 (543)
T ss_dssp TTTTHHHHC
T ss_pred HHHHHHHhC
Confidence 888888763
No 71
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.49 E-value=2.7e-13 Score=138.44 Aligned_cols=207 Identities=13% Similarity=0.160 Sum_probs=131.8
Q ss_pred CCCCceeec---hHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccc
Q 004256 92 FPLAAVVGQ---DAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (765)
Q Consensus 92 ~~f~~ivG~---~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (765)
..|++++|. ..+...+.-....+...+|+|+||+|||||++|+.++..+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~-------------------------- 78 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE-------------------------- 78 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH--------------------------
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH--------------------------
Confidence 678889972 345555543333345678999999999999999999987542
Q ss_pred ccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHH--HHHHHH
Q 004256 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI--SNLLLN 246 (765)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~--q~~Ll~ 246 (765)
...+++.+++......+... + . .....++|||||++.++... ++.|+.
T Consensus 79 -------------~~~~~~~~~~~~~~~~~~~~------~--------~---~~~~~~vliiDe~~~~~~~~~~~~~l~~ 128 (242)
T 3bos_A 79 -------------LERRSFYIPLGIHASISTAL------L--------E---GLEQFDLICIDDVDAVAGHPLWEEAIFD 128 (242)
T ss_dssp -------------TTCCEEEEEGGGGGGSCGGG------G--------T---TGGGSSEEEEETGGGGTTCHHHHHHHHH
T ss_pred -------------cCCeEEEEEHHHHHHHHHHH------H--------H---hccCCCEEEEeccccccCCHHHHHHHHH
Confidence 11223333222111111000 0 0 01346799999999998755 888888
Q ss_pred HHHcCceEEEeCCeeEEeeCceEEEEeecCCCC---CcchHHHhhhh--cceeecCCCCHhhHHHHHHHHHHHHHhhHHH
Q 004256 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (765)
Q Consensus 247 ~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg---~l~~~L~dRf~--~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~ 321 (765)
+++... . ...+.+|.++|.... .+.+.|++||. ..+.+. |++.+++.+++....
T Consensus 129 ~l~~~~----~-------~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~-~~~~~~~~~~l~~~~--------- 187 (242)
T 3bos_A 129 LYNRVA----E-------QKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQ-PMMDDEKLAALQRRA--------- 187 (242)
T ss_dssp HHHHHH----H-------HCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECC-CCCGGGHHHHHHHHH---------
T ss_pred HHHHHH----H-------cCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeC-CCCHHHHHHHHHHHH---------
Confidence 876422 0 012335555554332 44589999995 555676 556666666654211
Q ss_pred hccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 322 ~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
.. .++.++++++++++..+ +. +.|.++.+++.+...|...+ ..|+.+||++++.
T Consensus 188 ----------------~~----~~~~~~~~~~~~l~~~~---~g-~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 188 ----------------AM----RGLQLPEDVGRFLLNRM---AR-DLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp ----------------HH----TTCCCCHHHHHHHHHHT---TT-CHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred ----------------HH----cCCCCCHHHHHHHHHHc---cC-CHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 11 13578899999888765 22 57999999999888886666 4699999998874
No 72
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=1.7e-13 Score=148.80 Aligned_cols=225 Identities=11% Similarity=0.051 Sum_probs=140.0
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (765)
.++..|++|+|++.+++.|..........++||+||+|||||++|++++..+.....
T Consensus 31 ~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~----------------------- 87 (353)
T 1sxj_D 31 YRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDL----------------------- 87 (353)
T ss_dssp TCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHH-----------------------
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcc-----------------------
Confidence 456678999999999998865555444467999999999999999999987531000
Q ss_pred ccccccCcccccccCCCeEeCCCCCc--cc---ceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 169 AEYDTAGNLKTQIARSPFVQIPLGVT--ED---RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~l~~~~~--e~---~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
....++.+++... .+ +.+... ......+......+.....+.++|||||++.++...++.
T Consensus 88 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~ 152 (353)
T 1sxj_D 88 -------------MKSRILELNASDERGISIVREKVKNF--ARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSA 152 (353)
T ss_dssp -------------HTTSEEEECSSSCCCHHHHTTHHHHH--HHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHH
T ss_pred -------------cccceEEEccccccchHHHHHHHHHH--hhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHH
Confidence 0112222222110 00 000000 000000000000001112345699999999999999999
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhc
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~ 323 (765)
|+.+|++.. .+.++|.++| ....+.+.|.+|+.. +.+. |+..++..+++...
T Consensus 153 Ll~~le~~~-------------~~~~~il~~~-~~~~l~~~l~sR~~~-i~~~-~~~~~~~~~~l~~~------------ 204 (353)
T 1sxj_D 153 LRRTMETYS-------------GVTRFCLICN-YVTRIIDPLASQCSK-FRFK-ALDASNAIDRLRFI------------ 204 (353)
T ss_dssp HHHHHHHTT-------------TTEEEEEEES-CGGGSCHHHHHHSEE-EECC-CCCHHHHHHHHHHH------------
T ss_pred HHHHHHhcC-------------CCceEEEEeC-chhhCcchhhccCce-EEeC-CCCHHHHHHHHHHH------------
Confidence 999998754 2345666777 344678999999974 3565 45555444433211
Q ss_pred cccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHH
Q 004256 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGRE-KVNVDDLKKAVE 400 (765)
Q Consensus 324 ~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~-~Vt~edv~~A~~ 400 (765)
+. ..++.+++++++++++++. .+.|..+.+++.+...+.-.+.. .|+.+||.+++.
T Consensus 205 -------------~~----~~~~~i~~~~l~~l~~~~~----G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 205 -------------SE----QENVKCDDGVLERILDISA----GDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp -------------HH----TTTCCCCHHHHHHHHHHTS----SCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred -------------HH----HhCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 11 1257899999999987754 25799999988877766544433 899999998765
No 73
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.48 E-value=8.9e-14 Score=157.43 Aligned_cols=221 Identities=17% Similarity=0.141 Sum_probs=135.1
Q ss_pred CCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccccc
Q 004256 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (765)
+..|+.|||++..++.+..........++||+||||||||++|++|+..+.+-.
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~-------------------------- 229 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNE-------------------------- 229 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSC--------------------------
T ss_pred cCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCC--------------------------
Confidence 445788999999999885444445678999999999999999999999864200
Q ss_pred ccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHc
Q 004256 171 YDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTE 250 (765)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~ 250 (765)
.+......+|+.++++ ....|.. ..........+..+.++||||| ...+.++.|+.+|+.
T Consensus 230 ------~p~~l~~~~~~~l~~~---~~~~g~~-------e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~ 289 (468)
T 3pxg_A 230 ------VPEILRDKRVMTLDMG---TKYRGEF-------EDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLAR 289 (468)
T ss_dssp ------SCTTTSSCCEECC--------------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTS
T ss_pred ------CChhhcCCeEEEeeCC---ccccchH-------HHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcC
Confidence 0001134567766665 2222211 1110000111222357899999 566788888888876
Q ss_pred CceEEEeCCeeEEeeCceEEEEeecCCCC----CcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcccc
Q 004256 251 GVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (765)
Q Consensus 251 ~~~~v~r~G~~~~~p~~~~lIat~N~~eg----~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~ 326 (765)
+. +++|++||+.+. .++++|.+||.. +.+.. |+.+.+.+|+.. +..
T Consensus 290 g~---------------v~vI~at~~~e~~~~~~~~~al~~Rf~~-i~v~~-p~~e~~~~iL~~---~~~---------- 339 (468)
T 3pxg_A 290 GE---------------LQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQ-PSVDESIQILQG---LRD---------- 339 (468)
T ss_dssp SS---------------CEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCC-CCHHHHHHHHHH---TTT----------
T ss_pred CC---------------EEEEecCCHHHHHHHhhcCHHHHHhCcc-ceeCC-CCHHHHHHHHHH---HHH----------
Confidence 63 689999998762 578999999986 57874 566666666542 211
Q ss_pred ccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCC--CCCChHHHHHHHHHHHHHHcCCC-CCCHHHHHHHH
Q 004256 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC--QGHRAELYAARVAKCLAALEGRE-KVNVDDLKKAV 399 (765)
Q Consensus 327 ~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~--~s~Ra~i~llr~A~a~A~l~gr~-~Vt~edv~~A~ 399 (765)
.+....++.++++++.+++.++.+.-. ..++..+.++..|.+.+.+++.. .....+++..+
T Consensus 340 ------------~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i 403 (468)
T 3pxg_A 340 ------------RYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKL 403 (468)
T ss_dssp ------------TSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHH
T ss_pred ------------HHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 111224688999999999999877532 12457899999999888887643 22344444433
No 74
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.47 E-value=3.2e-13 Score=135.52 Aligned_cols=211 Identities=21% Similarity=0.190 Sum_probs=133.3
Q ss_pred CCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccc
Q 004256 90 QFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (765)
.+..|.+++|++..+..|.-........+++|+||+|||||++++.+++.+....
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~------------------------- 66 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN------------------------- 66 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-------------------------
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccc-------------------------
Confidence 4456788999999998885444334455799999999999999999998652100
Q ss_pred cccccCcccccccCCCeEeCCCCCcc--cceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHH
Q 004256 170 EYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (765)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~l~~~~~e--~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~ 247 (765)
....++.+.+.... +.+...+ .... ....+.....++|||||++.++...++.|+.+
T Consensus 67 ------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~ 125 (226)
T 2chg_A 67 ------------WRDNFIEMNASDERGIDVVRHKI--KEFA-------RTAPIGGAPFKIIFLDEADALTADAQAALRRT 125 (226)
T ss_dssp ------------GGGGEEEEETTCTTCHHHHHHHH--HHHH-------TSCCSTTCSCEEEEEETGGGSCHHHHHHHHHH
T ss_pred ------------cccceEEeccccccChHHHHHHH--HHHh-------cccCCCccCceEEEEeChhhcCHHHHHHHHHH
Confidence 01223333222110 0000000 0000 00011123567999999999999999999999
Q ss_pred HHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccccc
Q 004256 248 LTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEE 327 (765)
Q Consensus 248 l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~ 327 (765)
++... .++++|+++|. ...+.+.|.+||. .+.+. |+..++..+++.. +
T Consensus 126 l~~~~-------------~~~~~i~~~~~-~~~~~~~l~~r~~-~i~~~-~~~~~~~~~~l~~---~------------- 173 (226)
T 2chg_A 126 MEMYS-------------KSCRFILSCNY-VSRIIEPIQSRCA-VFRFK-PVPKEAMKKRLLE---I------------- 173 (226)
T ss_dssp HHHTT-------------TTEEEEEEESC-GGGSCHHHHTTSE-EEECC-CCCHHHHHHHHHH---H-------------
T ss_pred HHhcC-------------CCCeEEEEeCC-hhhcCHHHHHhCc-eeecC-CCCHHHHHHHHHH---H-------------
Confidence 98742 25678888884 4567899999998 44565 4555544444321 1
Q ss_pred cCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 328 ETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 328 ~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
+... ++.+++++++.+++.+ +. +.|.++.+++.+...+ ..|+.+||++++.
T Consensus 174 ---------~~~~----~~~~~~~~~~~l~~~~---~g-~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 174 ---------CEKE----GVKITEDGLEALIYIS---GG-DFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp ---------HHHH----TCCBCHHHHHHHHHHH---TT-CHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred ---------HHHc----CCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 1111 3458888888887654 22 4677777777655433 6899999999875
No 75
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.47 E-value=1.4e-13 Score=148.06 Aligned_cols=211 Identities=15% Similarity=0.070 Sum_probs=130.8
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCC-CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~-~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
.++..|++++|++.+++.|.-...... ...+|++||+|||||++|+++++.+.
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-------------------------- 73 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-------------------------- 73 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT--------------------------
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--------------------------
Confidence 456678999999999988843333222 24467778899999999999998763
Q ss_pred cccccccCcccccccCCCeEeCCCCCcc-cceeeecccccccccCCCcccCCceeeccCCeEeccccccCC-HHHHHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLGVTE-DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD-EGISNLLL 245 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~~~e-~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~-~~~q~~Ll 245 (765)
.+|+.+++.... +.+...+ ....... + .....++|||||++.++ .+.++.|+
T Consensus 74 ----------------~~~~~i~~~~~~~~~i~~~~--~~~~~~~-----~---~~~~~~vliiDEi~~l~~~~~~~~L~ 127 (324)
T 3u61_B 74 ----------------ADMMFVNGSDCKIDFVRGPL--TNFASAA-----S---FDGRQKVIVIDEFDRSGLAESQRHLR 127 (324)
T ss_dssp ----------------EEEEEEETTTCCHHHHHTHH--HHHHHBC-----C---CSSCEEEEEEESCCCGGGHHHHHHHH
T ss_pred ----------------CCEEEEcccccCHHHHHHHH--HHHHhhc-----c---cCCCCeEEEEECCcccCcHHHHHHHH
Confidence 123333322110 0000000 0000000 0 01245799999999999 99999999
Q ss_pred HHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccc
Q 004256 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (765)
Q Consensus 246 ~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~ 325 (765)
.++++.. .++++|+++|. ...+.++|++||.. +.+. |++.+++.+|+......+..
T Consensus 128 ~~le~~~-------------~~~~iI~~~n~-~~~l~~~l~sR~~~-i~~~-~~~~~e~~~il~~~~~~l~~-------- 183 (324)
T 3u61_B 128 SFMEAYS-------------SNCSIIITANN-IDGIIKPLQSRCRV-ITFG-QPTDEDKIEMMKQMIRRLTE-------- 183 (324)
T ss_dssp HHHHHHG-------------GGCEEEEEESS-GGGSCTTHHHHSEE-EECC-CCCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHhCC-------------CCcEEEEEeCC-ccccCHHHHhhCcE-EEeC-CCCHHHHHHHHHHHHHHHHH--------
Confidence 9998632 35788999995 44788999999975 4676 56777777776544333221
Q ss_pred cccCcHHHHHHHHHhcccCCccCCH-HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004256 326 EEETDLAKTQIILAREYLKDVAIGR-EQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 326 ~~~~~~~~~~il~a~~~~~nv~i~~-~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
++.. .++.+++ +++++++..+ +. +.|..++.+..+. ....|+.+++..++
T Consensus 184 ----------~~~~----~~~~~~~~~~~~~l~~~~---~g-d~R~a~~~L~~~~------~~~~i~~~~v~~~~ 234 (324)
T 3u61_B 184 ----------ICKH----EGIAIADMKVVAALVKKN---FP-DFRKTIGELDSYS------SKGVLDAGILSLVT 234 (324)
T ss_dssp ----------HHHH----HTCCBSCHHHHHHHHHHT---CS-CTTHHHHHHHHHG------GGTCBCC-------
T ss_pred ----------HHHH----cCCCCCcHHHHHHHHHhC---CC-CHHHHHHHHHHHh------ccCCCCHHHHHHHh
Confidence 1111 1467877 8888887653 22 5799888887754 23468888887664
No 76
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.46 E-value=3.4e-14 Score=175.13 Aligned_cols=164 Identities=15% Similarity=0.136 Sum_probs=129.6
Q ss_pred CCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhhcC-CCCCCC
Q 004256 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERL-PCGGGS 636 (765)
Q Consensus 560 ~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~--~~~~~~~~l~~l-~~gG~T 636 (765)
.+.+|+||||.||||...++..+|.++..++.......++||||.|++. +.+.+|++. +...+...|+.+ ..+|+|
T Consensus 129 ~~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~-~~~~~~lt~~~~~~~l~~ai~~i~~~gG~T 207 (1095)
T 3k6s_A 129 QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNK-FQTHFTFEEFRRSSNPLSLLASVHQLQGFT 207 (1095)
T ss_dssp CCEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSS-EEEEECSHHHHSCSCGGGGTTTCCCCCSCB
T ss_pred CCccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCe-EEEEecCcccCCHHHHHHHHhhhhcccCCC
Confidence 3689999999999999999999999999999866655689999999998 999999985 555677778887 468899
Q ss_pred hhHHHHHHHHHHHHhh-hccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEE
Q 004256 637 PLAHGLSMAVRVGLNA-EKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLL 715 (765)
Q Consensus 637 ~l~~aL~~A~~~l~~~-~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~ 715 (765)
+++.||..|.+.+... .......+.+|||||||++|... ..+..+++.+++.||.++
T Consensus 208 ~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~----------------------~~~~~~a~~~r~~GI~i~ 265 (1095)
T 3k6s_A 208 YTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDS----------------------LDYKDVIPMADAAGIIRY 265 (1095)
T ss_dssp CHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCS----------------------SCHHHHHHHHHHHCEEEC
T ss_pred hHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCc----------------------hhHHHHHHHHHHCCCEEE
Confidence 9999999998765432 11122235689999999986211 123566777888899999
Q ss_pred EEeCCCCC---CCHHHHHHHHHHcCC-eEEEcCCC
Q 004256 716 VIDTENKF---VSTGFAKEIARVAQG-KYYYLPNA 746 (765)
Q Consensus 716 vig~~~~~---~~~~~l~~LA~~~gG-~y~~~~~~ 746 (765)
+||+|..+ ++...|++||...+| .+|.+++.
T Consensus 266 aIGVG~~~~~~~d~~eL~~IAs~p~g~~vf~v~d~ 300 (1095)
T 3k6s_A 266 AIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDF 300 (1095)
T ss_dssp CEEBSSGGGSTTSSHHHHTTSCSSTTTSCCCBSCS
T ss_pred EEecccccccccCHHHHHHHHcCCCCceEEEcCCH
Confidence 99999752 478899999999876 67777754
No 77
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.46 E-value=9.7e-13 Score=142.41 Aligned_cols=219 Identities=20% Similarity=0.236 Sum_probs=145.3
Q ss_pred CCCCCceeechHHHHHHHHhhh-----cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccc
Q 004256 91 FFPLAAVVGQDAIKTALLLGAI-----DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~l~~~-----~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (765)
+..|+.++|++.++..+....- .....+++|+||+||||||++++|+..+..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~----------------------- 77 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT----------------------- 77 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC-----------------------
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----------------------
Confidence 4467789999998888743321 112367999999999999999999987631
Q ss_pred cccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCce-eeccCCeEeccccccCCHHHHHHH
Q 004256 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLL-AEAHRGVLYIDEINLLDEGISNLL 244 (765)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll-~~A~~GiL~lDEi~~L~~~~q~~L 244 (765)
++........ ...-|+.. ++ ....+.++||||++.+....++.|
T Consensus 78 -------------------~~~~~sg~~~----~~~~~l~~------------~~~~~~~~~v~~iDE~~~l~~~~~e~L 122 (334)
T 1in4_A 78 -------------------NIHVTSGPVL----VKQGDMAA------------ILTSLERGDVLFIDEIHRLNKAVEELL 122 (334)
T ss_dssp -------------------CEEEEETTTC----CSHHHHHH------------HHHHCCTTCEEEEETGGGCCHHHHHHH
T ss_pred -------------------CEEEEechHh----cCHHHHHH------------HHHHccCCCEEEEcchhhcCHHHHHHH
Confidence 1110000000 00001000 00 012457999999999999999999
Q ss_pred HHHHHcCceEEE-eCCee----EEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhH
Q 004256 245 LNVLTEGVNIVE-REGIS----FKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (765)
Q Consensus 245 l~~l~~~~~~v~-r~G~~----~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~ 319 (765)
+..++.....+- ..+.. ......|.+++++| ..+.+++.+.+||++.+.++ |+..++..+|+.....
T Consensus 123 ~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~-~~~~Ls~~l~sR~~l~~~Ld-~~~~~~l~~iL~~~~~------ 194 (334)
T 1in4_A 123 YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT-RSGLLSSPLRSRFGIILELD-FYTVKELKEIIKRAAS------ 194 (334)
T ss_dssp HHHHHTSCCCC---------------CCCEEEEEES-CGGGSCHHHHTTCSEEEECC-CCCHHHHHHHHHHHHH------
T ss_pred HHHHHhcccceeeccCcccccccccCCCeEEEEecC-CcccCCHHHHHhcCceeeCC-CCCHHHHHHHHHHHHH------
Confidence 988876532110 00100 01123578888777 56789999999998776777 6677777666653210
Q ss_pred HHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004256 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 320 ~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
. .++.++++++.+|+.. .+. ++|..+.+++.+...|...|...|+.+++++|+
T Consensus 195 -------------------~----~~~~~~~~~~~~ia~~---~~G-~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al 247 (334)
T 1in4_A 195 -------------------L----MDVEIEDAAAEMIAKR---SRG-TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTM 247 (334)
T ss_dssp -------------------H----TTCCBCHHHHHHHHHT---STT-CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHH
T ss_pred -------------------H----cCCCcCHHHHHHHHHh---cCC-ChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 0 1467888888777543 333 679999999999999999999999999999999
Q ss_pred HHh
Q 004256 400 ELV 402 (765)
Q Consensus 400 ~lv 402 (765)
...
T Consensus 248 ~~~ 250 (334)
T 1in4_A 248 EVL 250 (334)
T ss_dssp HHH
T ss_pred HHh
Confidence 874
No 78
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.45 E-value=9.3e-13 Score=146.28 Aligned_cols=154 Identities=16% Similarity=0.207 Sum_probs=100.4
Q ss_pred cCCeEeccccccCCH------------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEee-----cCCCCCcchHHH
Q 004256 224 HRGVLYIDEINLLDE------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATY-----NPEEGVVREHLL 286 (765)
Q Consensus 224 ~~GiL~lDEi~~L~~------------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~-----N~~eg~l~~~L~ 286 (765)
.+|+||+|||+.+.. .+|+.||.+|+...+.. .. .. .-..++.+|+|. |+. .+.|+|.
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~-~~-~~-~d~~~ilfI~~gaf~~~~~~--dlipel~ 324 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KH-GM-VKTDHILFIASGAFQVARPS--DLIPELQ 324 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE-TT-EE-EECTTCEEEEEECCSSCCGG--GSCHHHH
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc-cc-ce-ecCCcEEEEeccccccCChh--hcchHHh
Confidence 689999999998853 38999999999877554 11 11 123467888886 543 3669999
Q ss_pred hhhhcceeecCCCCHhhHHHHHHHH-HHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHh---
Q 004256 287 DRIAINLSADLPMTFEDRVAAVGIA-TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR--- 362 (765)
Q Consensus 287 dRf~~~v~i~~p~~~e~r~dI~~l~-~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~--- 362 (765)
+||.++|.+. +++.++...|+..- .+...++ ...+.. .-.++.+++++++.|++.+..
T Consensus 325 ~R~~i~i~l~-~lt~~e~~~Il~~~~~~l~~q~---------------~~~~~~--~~~~l~~~~~al~~i~~~a~~~~~ 386 (444)
T 1g41_A 325 GRLPIRVELT-ALSAADFERILTEPHASLTEQY---------------KALMAT--EGVNIAFTTDAVKKIAEAAFRVNE 386 (444)
T ss_dssp TTCCEEEECC-CCCHHHHHHHHHSSTTCHHHHH---------------HHHHHT--TTCEEEECHHHHHHHHHHHHHHHH
T ss_pred cccceeeeCC-CCCHHHHHHHHHHHHHhHHHHH---------------HHHhcc--cCceEEECHHHHHHHHHHHHHhcc
Confidence 9999988776 67888887776410 0111111 111111 123578999999999998764
Q ss_pred -CCCCCCChHHHHHHHHHHHHHHc-----C-CCCCCHHHHHHHHH
Q 004256 363 -GGCQGHRAELYAARVAKCLAALE-----G-REKVNVDDLKKAVE 400 (765)
Q Consensus 363 -~g~~s~Ra~i~llr~A~a~A~l~-----g-r~~Vt~edv~~A~~ 400 (765)
..-.|.|.+..++.....-+.++ + .-.|+.++|...+.
T Consensus 387 ~t~~~GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~ 431 (444)
T 1g41_A 387 KTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALG 431 (444)
T ss_dssp HSCCCGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHT
T ss_pred CCccCCchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcC
Confidence 12237899888877655444333 1 12478998887654
No 79
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.43 E-value=5.1e-14 Score=146.18 Aligned_cols=211 Identities=22% Similarity=0.259 Sum_probs=128.3
Q ss_pred CCCCCCceeechHHHHHHH--Hhhhc----------CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALL--LGAID----------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~--l~~~~----------~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~ 157 (765)
..+.|++|+|++.++..+. ...+. ....+++|+||+|||||+++++|+..+.
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~---------------- 74 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---------------- 74 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT----------------
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC----------------
Confidence 4567899999999888772 11111 1134599999999999999999998764
Q ss_pred CCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEeccccc
Q 004256 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEIN 234 (765)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~ 234 (765)
.+++.+.........+|.. .+. ...++..+ ...++|+|||+
T Consensus 75 --------------------------~~~i~~~~~~~~~~~~~~~--~~~--------i~~~~~~~~~~~~~i~~~Deid 118 (254)
T 1ixz_A 75 --------------------------VPFITASGSDFVEMFVGVG--AAR--------VRDLFETAKRHAPCIVFIDEID 118 (254)
T ss_dssp --------------------------CCEEEEEHHHHHHSCTTHH--HHH--------HHHHHHHHTTSSSEEEEEETHH
T ss_pred --------------------------CCEEEeeHHHHHHHHhhHH--HHH--------HHHHHHHHHhcCCeEEEehhhh
Confidence 1233221110000011100 000 00111222 13589999997
Q ss_pred cCC--------------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCC
Q 004256 235 LLD--------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (765)
Q Consensus 235 ~L~--------------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p 298 (765)
.+. ...++.|+..|+.+. ....+++++++| .+..++++|+. ||+..+.+..
T Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~-----------~~~~~i~~a~t~-~p~~ld~~l~r~~rf~~~i~i~~- 185 (254)
T 1ixz_A 119 AVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATN-RPDILDPALLRPGRFDRQIAIDA- 185 (254)
T ss_dssp HHHC---------CHHHHHHHHHHHHHHHTCC-----------TTCCEEEEEEES-CGGGSCGGGGSTTSSCEEEECCS-
T ss_pred hhhcccCccccccchHHHHHHHHHHHHHhCCC-----------CCCCEEEEEccC-CchhCCHHHcCCCcCCeEEeeCC-
Confidence 663 134567777777553 112367788888 45668889987 8998888884
Q ss_pred CCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHH-HHHHHHHHHhCCCCCCChHHHHHHH
Q 004256 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARV 377 (765)
Q Consensus 299 ~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~-l~~l~~~a~~~g~~s~Ra~i~llr~ 377 (765)
|+.+.|.+|+... .. +..+++++ +..++ ......+.|.+..+++.
T Consensus 186 p~~~~r~~il~~~---~~----------------------------~~~~~~~~~~~~la---~~~~G~~~~dl~~~~~~ 231 (254)
T 1ixz_A 186 PDVKGREQILRIH---AR----------------------------GKPLAEDVDLALLA---KRTPGFVGADLENLLNE 231 (254)
T ss_dssp CCHHHHHHHHHHH---HT----------------------------TSCBCTTCCHHHHH---HTCTTCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH---Hc----------------------------CCCCCcccCHHHHH---HHcCCCCHHHHHHHHHH
Confidence 5777777776421 10 01122111 33333 23323245778889999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHH
Q 004256 378 AKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 378 A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
|...|..+++..|+.+|+++|+
T Consensus 232 a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 232 AALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHhcCCCcCHHHHHHHh
Confidence 8888988888899999999875
No 80
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=99.42 E-value=1.1e-12 Score=151.75 Aligned_cols=161 Identities=15% Similarity=0.166 Sum_probs=119.3
Q ss_pred ceEEEEEeCCCCCCc------hhHHHHHHHHHHHHHh--hcCCCCeEEEEEeeCCCc-------------EEEcCCCc-c
Q 004256 562 ALVIFVVDASGSMAL------NRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGDSA-------------EVLLPPSR-S 619 (765)
Q Consensus 562 ~~vv~vvD~SgSM~~------~rl~~ak~a~~~ll~~--~~~~~d~v~lv~F~~~~a-------------~~~~p~t~-~ 619 (765)
-.++||||+|+||.. +||..+|.++..++.. ...+.|+||||.|++... .++.+++. +
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~l~~~~ 87 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPD 87 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCC
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeecCCCCC
Confidence 579999999999952 6999999999888875 468999999999988731 13334332 3
Q ss_pred HHHHHHHhhc-CCCC-CCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHH
Q 004256 620 IAMARKRLER-LPCG-GGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELK 697 (765)
Q Consensus 620 ~~~~~~~l~~-l~~g-G~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (765)
...+ ..|.. +.+| ++|++..||..|..++.............|||+|||..|.+.
T Consensus 88 ~~~l-~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~---------------------- 144 (565)
T 1jey_B 88 FDLL-EDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSK---------------------- 144 (565)
T ss_dssp HHHH-HHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCC----------------------
T ss_pred HHHH-HHHHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCH----------------------
Confidence 3444 44555 7766 799999999999999976532221224579999999988641
Q ss_pred HHHHHHHHHHHhCCCEEE-EEeCCCCC-------------------------------CCHHHHHHHHHHcCC-----eE
Q 004256 698 DEILEVAGKIYKAGMSLL-VIDTENKF-------------------------------VSTGFAKEIARVAQG-----KY 740 (765)
Q Consensus 698 ~~~~~~a~~~~~~gi~~~-vig~~~~~-------------------------------~~~~~l~~LA~~~gG-----~y 740 (765)
.++..+++.+++.||.++ +|+++.+. .+..+|++||..+|| .|
T Consensus 145 ~~~~~~a~~l~~~gI~i~~vig~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~ 224 (565)
T 1jey_B 145 SQLDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEI 224 (565)
T ss_dssp TTHHHHHHHHHHTTEEEEEEESSCCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGE
T ss_pred HHHHHHHHHHHhcCcEEEEEeccCCCcCCcccccccccccccccccccchhccccchhhhHHHHHHHHHhcCCCccccee
Confidence 235678899999999999 88776421 124568999999999 89
Q ss_pred EEcCC
Q 004256 741 YYLPN 745 (765)
Q Consensus 741 ~~~~~ 745 (765)
+++++
T Consensus 225 ~~~~~ 229 (565)
T 1jey_B 225 YSFSE 229 (565)
T ss_dssp EEHHH
T ss_pred ecHHH
Confidence 88753
No 81
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.41 E-value=4e-13 Score=147.28 Aligned_cols=245 Identities=17% Similarity=0.118 Sum_probs=143.9
Q ss_pred CCCCceeechHHHHHHHHhh--h--cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcc-----hhcccccCCCCCCCCc-c
Q 004256 92 FPLAAVVGQDAIKTALLLGA--I--DREIGGIAISGRRGTAKTVMARGLHAILPPIE-----VVVGSIANADPTCPDE-W 161 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~--~--~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~-----~~~~~~~~~~~~~~~~-~ 161 (765)
+.++.++|++..+..+.-.. . .....+|+|+||+|||||++++.+++.+.... ......+||.+..... .
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 34478999999988884322 2 34456899999999999999999998763210 1122233442211000 0
Q ss_pred cccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec-cCCeEeccccccCCHH-
Q 004256 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA-HRGVLYIDEINLLDEG- 239 (765)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A-~~GiL~lDEi~~L~~~- 239 (765)
...+...+. ...+ ..+.+..+++..+ ...+... ...+|||||++.+...
T Consensus 96 ~~~l~~~l~-----------~~~~----~~~~~~~~~~~~l--------------~~~l~~~~~~~vlilDEi~~l~~~~ 146 (387)
T 2v1u_A 96 ASAIAEAVG-----------VRVP----FTGLSVGEVYERL--------------VKRLSRLRGIYIIVLDEIDFLPKRP 146 (387)
T ss_dssp HHHHHHHHS-----------CCCC----SSCCCHHHHHHHH--------------HHHHTTSCSEEEEEEETTTHHHHST
T ss_pred HHHHHHHhC-----------CCCC----CCCCCHHHHHHHH--------------HHHHhccCCeEEEEEccHhhhcccC
Confidence 000000000 0000 0000000111000 0000000 1228999999999876
Q ss_pred -HHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC--CCcchHHHhhhhc-ceeecCCCCHhhHHHHHHHHHHHH
Q 004256 240 -ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAI-NLSADLPMTFEDRVAAVGIATQFQ 315 (765)
Q Consensus 240 -~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e--g~l~~~L~dRf~~-~v~i~~p~~~e~r~dI~~l~~~~~ 315 (765)
.++.|..++..... . ..+.++++|+++|..+ ..+.+.+++||+. .+.+. |++.++..+|+.. +.
T Consensus 147 ~~~~~l~~l~~~~~~-~-------~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~-~l~~~~~~~il~~---~~ 214 (387)
T 2v1u_A 147 GGQDLLYRITRINQE-L-------GDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFP-PYTAPQLRDILET---RA 214 (387)
T ss_dssp THHHHHHHHHHGGGC-C------------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBC-CCCHHHHHHHHHH---HH
T ss_pred CCChHHHhHhhchhh-c-------CCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeC-CCCHHHHHHHHHH---HH
Confidence 77788777764320 0 0034678999998643 5788999999976 44454 4555555555432 11
Q ss_pred HhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHH
Q 004256 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (765)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv 395 (765)
. ....+..+++++++.++..+..... ..|..+.+++.|..+|...+...|+.+|+
T Consensus 215 ~------------------------~~~~~~~~~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v 269 (387)
T 2v1u_A 215 E------------------------EAFNPGVLDPDVVPLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHV 269 (387)
T ss_dssp H------------------------HHBCTTTBCSSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHH
T ss_pred H------------------------hhccCCCCCHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHH
Confidence 0 0012356788889999888875433 57999999999999999889999999999
Q ss_pred HHHHHHh
Q 004256 396 KKAVELV 402 (765)
Q Consensus 396 ~~A~~lv 402 (765)
..|+...
T Consensus 270 ~~a~~~~ 276 (387)
T 2v1u_A 270 YSARAEI 276 (387)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 82
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.40 E-value=1.2e-13 Score=145.52 Aligned_cols=211 Identities=23% Similarity=0.262 Sum_probs=125.4
Q ss_pred CCCCCCceeechHHHHHHH--Hhhhc----------CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALL--LGAID----------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~--l~~~~----------~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~ 157 (765)
..+.|++|+|++.++..+. ...+. ....+|+|+||+|||||+++++|+..+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~---------------- 98 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---------------- 98 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT----------------
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC----------------
Confidence 4567899999999888772 11111 1124599999999999999999998764
Q ss_pred CCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEeccccc
Q 004256 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEIN 234 (765)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~ 234 (765)
.+++.+..........|.. .+. ...++..+ ...++|+|||+
T Consensus 99 --------------------------~~~i~~~~~~~~~~~~~~~--~~~--------i~~~~~~~~~~~~~i~~iDeid 142 (278)
T 1iy2_A 99 --------------------------VPFITASGSDFVEMFVGVG--AAR--------VRDLFETAKRHAPCIVFIDEID 142 (278)
T ss_dssp --------------------------CCEEEEEHHHHHHSTTTHH--HHH--------HHHHHHHHHTSCSEEEEEETHH
T ss_pred --------------------------CCEEEecHHHHHHHHhhHH--HHH--------HHHHHHHHHhcCCcEEehhhhH
Confidence 1233221110000001100 000 00111111 23589999997
Q ss_pred cCC--------------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCC
Q 004256 235 LLD--------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (765)
Q Consensus 235 ~L~--------------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p 298 (765)
.+. ...++.++..|+.+. ....+++++++| .+..++++|+. ||+..+.+..
T Consensus 143 ~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~-----------~~~~~i~~a~t~-~p~~ld~~l~r~~rf~~~i~i~~- 209 (278)
T 1iy2_A 143 AVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATN-RPDILDPALLRPGRFDRQIAIDA- 209 (278)
T ss_dssp HHHCC--------CHHHHHHHHHHHHHHTTCC-----------TTCCEEEEEEES-CTTSSCHHHHSTTSSCCEEECCC-
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHhCCC-----------CCCCEEEEEecC-CchhCCHhHcCCCcCCeEEEeCC-
Confidence 652 123445555555443 112467788888 45668899987 8998888885
Q ss_pred CCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHH-HHHHHHHHHhCCCCCCChHHHHHHH
Q 004256 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARV 377 (765)
Q Consensus 299 ~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~-l~~l~~~a~~~g~~s~Ra~i~llr~ 377 (765)
|+.+.|.+|+... .. +..+++++ +..+ +......+.|.+..+++.
T Consensus 210 p~~~~r~~il~~~---~~----------------------------~~~~~~~~~~~~l---a~~~~G~~~~dl~~l~~~ 255 (278)
T 1iy2_A 210 PDVKGREQILRIH---AR----------------------------GKPLAEDVDLALL---AKRTPGFVGADLENLLNE 255 (278)
T ss_dssp CCHHHHHHHHHHH---HT----------------------------TSCBCTTCCHHHH---HHTCTTCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH---Hc----------------------------cCCCCcccCHHHH---HHHcCCCCHHHHHHHHHH
Confidence 5777777776521 10 01122111 2233 222222244677788888
Q ss_pred HHHHHHHcCCCCCCHHHHHHHH
Q 004256 378 AKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 378 A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
|...|..+++..|+.+|+++|+
T Consensus 256 a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 256 AALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHhCCCCcCHHHHHHHh
Confidence 8888888888899999999875
No 83
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.39 E-value=3.2e-12 Score=129.77 Aligned_cols=231 Identities=21% Similarity=0.182 Sum_probs=130.9
Q ss_pred CCCCCCceeechHHHHHHHHhhhcC-CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccc
Q 004256 90 QFFPLAAVVGQDAIKTALLLGAIDR-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~~~~-~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (765)
.+..|.+++|++..+..|....... ....++|+||+|||||++++.+++.+..... .....| ..|..|...
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~ 89 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG--ITATPC------GVCDNCREI 89 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTC--SCSSCC------SCSHHHHHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCC--CCCCCC------cccHHHHHH
Confidence 3456788999999998884333222 2346999999999999999999987542110 000111 011111100
Q ss_pred ccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHH
Q 004256 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (765)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l 248 (765)
.. . ....++.+..... .-.. ++ ..+.... . .........+|||||++.++...++.|+..+
T Consensus 90 ~~----~------~~~~~~~~~~~~~--~~~~--~~-~~~~~~~-~---~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l 150 (250)
T 1njg_A 90 EQ----G------RFVDLIEIDAASR--TKVE--DT-RDLLDNV-Q---YAPARGRFKVYLIDEVHMLSRHSFNALLKTL 150 (250)
T ss_dssp HT----T------CCSSEEEEETTCG--GGHH--HH-HHHHHSC-C---CSCSSSSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred hc----c------CCcceEEecCccc--ccHH--HH-HHHHHHh-h---hchhcCCceEEEEECcccccHHHHHHHHHHH
Confidence 00 0 0011111111100 0000 00 0000000 0 0001223569999999999999999999999
Q ss_pred HcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcccccc
Q 004256 249 TEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEE 328 (765)
Q Consensus 249 ~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~ 328 (765)
++. +.++++|.++|. ...+.+.+++|+. .+.+. |++.++..+++. .+.
T Consensus 151 ~~~-------------~~~~~~i~~t~~-~~~~~~~l~~r~~-~i~l~-~l~~~e~~~~l~---~~~------------- 198 (250)
T 1njg_A 151 EEP-------------PEHVKFLLATTD-PQKLPVTILSRCL-QFHLK-ALDVEQIRHQLE---HIL------------- 198 (250)
T ss_dssp HSC-------------CTTEEEEEEESC-GGGSCHHHHTTSE-EEECC-CCCHHHHHHHHH---HHH-------------
T ss_pred hcC-------------CCceEEEEEeCC-hHhCCHHHHHHhh-hccCC-CCCHHHHHHHHH---HHH-------------
Confidence 763 235678888884 4567788999963 33554 445544444332 211
Q ss_pred CcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 329 TDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 329 ~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
.. .++.+++++++.+++.+ .| .+|....+++.+. ..+...|+.+||++++.
T Consensus 199 ---------~~----~~~~~~~~~~~~l~~~~--~G--~~~~~~~~~~~~~----~~~~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 199 ---------NE----EHIAHEPRALQLLARAA--EG--SLRDALSLTDQAI----ASGDGQVSTQAVSAMLG 249 (250)
T ss_dssp ---------HH----TTCCBCHHHHHHHHHHH--TT--CHHHHHHHHHHHH----TTTTSSBCHHHHHHHSC
T ss_pred ---------Hh----cCCCCCHHHHHHHHHHc--CC--CHHHHHHHHHHHH----hccCceecHHHHHHHhC
Confidence 11 14678888888888876 22 4788888777653 34456899999998753
No 84
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.38 E-value=3e-12 Score=140.63 Aligned_cols=245 Identities=14% Similarity=0.109 Sum_probs=143.9
Q ss_pred CCCCceeechHHHHHHHH--hhh--cCCCC--cEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCC-ccccc
Q 004256 92 FPLAAVVGQDAIKTALLL--GAI--DREIG--GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD-EWEDG 164 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l--~~~--~~~~~--~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~ 164 (765)
+.++.++|++..+..|.. ... ..... +++|+||+|||||++++.++..+..........+||.+.... .....
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 444789999998887732 211 22334 799999999999999999998875321111223344322100 00000
Q ss_pred ccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCC--eEeccccccCCHHHHH
Q 004256 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRG--VLYIDEINLLDEGISN 242 (765)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~G--iL~lDEi~~L~~~~q~ 242 (765)
+...+ ..+. ...+.....++..+ ...+ ...++ +|||||++.++...+.
T Consensus 94 l~~~l-------------~~~~--~~~~~~~~~~~~~l--------------~~~l-~~~~~~~vlilDE~~~l~~~~~~ 143 (389)
T 1fnn_A 94 IARSL-------------NIPF--PRRGLSRDEFLALL--------------VEHL-RERDLYMFLVLDDAFNLAPDILS 143 (389)
T ss_dssp HHHHT-------------TCCC--CSSCCCHHHHHHHH--------------HHHH-HHTTCCEEEEEETGGGSCHHHHH
T ss_pred HHHHh-------------CccC--CCCCCCHHHHHHHH--------------HHHH-hhcCCeEEEEEECccccchHHHH
Confidence 00000 0000 00000000111000 0001 11223 8999999999999999
Q ss_pred HHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC--CCcchHHHhhhhc-ceeecCCCCHhhHHHHHHHHHHHHHhhH
Q 004256 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAI-NLSADLPMTFEDRVAAVGIATQFQERSN 319 (765)
Q Consensus 243 ~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e--g~l~~~L~dRf~~-~v~i~~p~~~e~r~dI~~l~~~~~~~~~ 319 (765)
.|+.+++... .. ...++.+|+++|..+ ..+.+.+++||.. .+.+. |++.++..+++. ....
T Consensus 144 ~L~~~~~~~~----~~-----~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~-pl~~~~~~~~l~---~~~~--- 207 (389)
T 1fnn_A 144 TFIRLGQEAD----KL-----GAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFS-PYTKDQIFDILL---DRAK--- 207 (389)
T ss_dssp HHHHHTTCHH----HH-----SSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECC-CCBHHHHHHHHH---HHHH---
T ss_pred HHHHHHHhCC----CC-----CcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeC-CCCHHHHHHHHH---HHHH---
Confidence 9999986421 00 002567888887431 4578899999986 33443 444444444432 1110
Q ss_pred HHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhC------CCCCCChHHHHHHHHHHHHHHcCCCCCCHH
Q 004256 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG------GCQGHRAELYAARVAKCLAALEGREKVNVD 393 (765)
Q Consensus 320 ~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~------g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~e 393 (765)
.+ .....+++++++.++..+... +. ..|..+.+++.|...|..++...|+.+
T Consensus 208 ------------------~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~ 265 (389)
T 1fnn_A 208 ------------------AG---LAEGSYSEDILQMIADITGAQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPE 265 (389)
T ss_dssp ------------------HH---BCTTSSCHHHHHHHHHHHSBSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHH
T ss_pred ------------------hh---cCCCCCCHHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence 00 012368899999999888644 23 579999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 004256 394 DLKKAVELVIL 404 (765)
Q Consensus 394 dv~~A~~lvl~ 404 (765)
|+..++..+..
T Consensus 266 ~v~~~~~~~~~ 276 (389)
T 1fnn_A 266 DVRKSSKEVLF 276 (389)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHhh
Confidence 99999887653
No 85
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.38 E-value=1.1e-12 Score=140.68 Aligned_cols=210 Identities=18% Similarity=0.172 Sum_probs=128.6
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (765)
.++..|++++|++.++..|.-........++||+||+|||||++|+++++.+....
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~------------------------ 74 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN------------------------ 74 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG------------------------
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc------------------------
Confidence 45667899999999999885433333445799999999999999999998752100
Q ss_pred ccccccCcccccccCCCeEeCCCCCc--ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHH
Q 004256 169 AEYDTAGNLKTQIARSPFVQIPLGVT--EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (765)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~l~~~~~--e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~ 246 (765)
....++.+.+... .+.+...+ ... ...+.+..+..+++||||++.++...++.|+.
T Consensus 75 -------------~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~ 132 (327)
T 1iqp_A 75 -------------WRHNFLELNASDERGINVIREKV--KEF-------ARTKPIGGASFKIIFLDEADALTQDAQQALRR 132 (327)
T ss_dssp -------------HHHHEEEEETTCHHHHHTTHHHH--HHH-------HHSCCGGGCSCEEEEEETGGGSCHHHHHHHHH
T ss_pred -------------ccCceEEeeccccCchHHHHHHH--HHH-------HhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHH
Confidence 0112333322210 00000000 000 01112223456799999999999999999999
Q ss_pred HHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcccc
Q 004256 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (765)
Q Consensus 247 ~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~ 326 (765)
++++.. .++++|.++|. ...+.+.|.+|+.. +.+. |+..++..+++. ..
T Consensus 133 ~le~~~-------------~~~~~i~~~~~-~~~l~~~l~sr~~~-~~~~-~l~~~~~~~~l~---~~------------ 181 (327)
T 1iqp_A 133 TMEMFS-------------SNVRFILSCNY-SSKIIEPIQSRCAI-FRFR-PLRDEDIAKRLR---YI------------ 181 (327)
T ss_dssp HHHHTT-------------TTEEEEEEESC-GGGSCHHHHHTEEE-EECC-CCCHHHHHHHHH---HH------------
T ss_pred HHHhcC-------------CCCeEEEEeCC-ccccCHHHHhhCcE-EEec-CCCHHHHHHHHH---HH------------
Confidence 998743 34677788874 44678899999874 3555 444443332221 11
Q ss_pred ccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 004256 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (765)
Q Consensus 327 ~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A 398 (765)
+. -.++.++++++++++..+ +. +.|..+.+++.+... ...|+.+++..+
T Consensus 182 ----------~~----~~~~~~~~~~~~~l~~~~---~g-~~r~~~~~l~~~~~~-----~~~i~~~~v~~~ 230 (327)
T 1iqp_A 182 ----------AE----NEGLELTEEGLQAILYIA---EG-DMRRAINILQAAAAL-----DKKITDENVFMV 230 (327)
T ss_dssp ----------HH----TTTCEECHHHHHHHHHHH---TT-CHHHHHHHHHHHHTT-----CSEECHHHHHHH
T ss_pred ----------HH----hcCCCCCHHHHHHHHHHC---CC-CHHHHHHHHHHHHhc-----CCCCCHHHHHHH
Confidence 11 124678899999888766 22 578888888755421 124555555443
No 86
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.37 E-value=1.6e-12 Score=156.03 Aligned_cols=209 Identities=17% Similarity=0.118 Sum_probs=127.5
Q ss_pred CCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccccc
Q 004256 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (765)
+..|+.|||++..++.+..........+|||+||||||||++|++|++.+.+-. +
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~----~--------------------- 230 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNE----V--------------------- 230 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSC----S---------------------
T ss_pred hCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCC----C---------------------
Confidence 456788999999999985554456678999999999999999999999864200 0
Q ss_pred ccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHc
Q 004256 171 YDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTE 250 (765)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~ 250 (765)
+......+++.++++ ....|. ++.......+.+....++||||| .+.+.++.|+.+|+.
T Consensus 231 -------p~~l~~~~~~~~~~g---~~~~G~-------~e~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~ 289 (758)
T 3pxi_A 231 -------PEILRDKRVMTLDMG---TKYRGE-------FEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLAR 289 (758)
T ss_dssp -------CTTTSSCCEECC--------------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTS
T ss_pred -------ChhhcCCeEEEeccc---ccccch-------HHHHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhc
Confidence 000023455555441 111121 11111111111222457899999 556788888888876
Q ss_pred CceEEEeCCeeEEeeCceEEEEeecCCCC----CcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcccc
Q 004256 251 GVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (765)
Q Consensus 251 ~~~~v~r~G~~~~~p~~~~lIat~N~~eg----~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~ 326 (765)
+. +++|++||+.+. .++++|.+||.. +.+. +|+.+.+.+|+.. +..
T Consensus 290 ~~---------------v~~I~at~~~~~~~~~~~d~al~rRf~~-i~v~-~p~~~~~~~il~~---~~~---------- 339 (758)
T 3pxi_A 290 GE---------------LQCIGATTLDEYRKYIEKDAALERRFQP-IQVD-QPSVDESIQILQG---LRD---------- 339 (758)
T ss_dssp SS---------------CEEEEECCTTTTHHHHTTCSHHHHSEEE-EECC-CCCHHHHHHHHHH---TTT----------
T ss_pred CC---------------EEEEeCCChHHHHHHhhccHHHHhhCcE-EEeC-CCCHHHHHHHHHH---HHH----------
Confidence 54 789999998773 688999999965 5787 4577777777652 111
Q ss_pred ccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCC--CCCChHHHHHHHHHHHHHHcCC
Q 004256 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC--QGHRAELYAARVAKCLAALEGR 387 (765)
Q Consensus 327 ~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~--~s~Ra~i~llr~A~a~A~l~gr 387 (765)
.+....++.++++++..++.++.+.-. ..++..+.++..|.+.+.+...
T Consensus 340 ------------~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~~ 390 (758)
T 3pxi_A 340 ------------RYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSF 390 (758)
T ss_dssp ------------TSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTT
T ss_pred ------------HHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhhcc
Confidence 111224577888888888888776521 1345677888888877776653
No 87
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.37 E-value=3.8e-13 Score=144.83 Aligned_cols=217 Identities=13% Similarity=0.152 Sum_probs=127.3
Q ss_pred CCCCCCcee-echH--HHHHHHHhhhcC--CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccc
Q 004256 90 QFFPLAAVV-GQDA--IKTALLLGAIDR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (765)
Q Consensus 90 ~~~~f~~iv-G~~~--~~~aL~l~~~~~--~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 164 (765)
..+.|+.++ |++. +..++...+-.+ ...+++|+||+|||||++|++++..+..
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~---------------------- 63 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK---------------------- 63 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHH----------------------
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHH----------------------
Confidence 346788887 6443 444443222233 3468999999999999999999987631
Q ss_pred ccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCC-cccCCceeeccCCeEeccccccCCH--HHH
Q 004256 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDE--GIS 241 (765)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~-~~~~Gll~~A~~GiL~lDEi~~L~~--~~q 241 (765)
...+++.+++.....++.+.+. .+.. .+.. . ..+.++||||||+.++. ..|
T Consensus 64 -----------------~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~-~--~~~~~vL~iDEi~~l~~~~~~~ 117 (324)
T 1l8q_A 64 -----------------RGYRVIYSSADDFAQAMVEHLK------KGTINEFRN-M--YKSVDLLLLDDVQFLSGKERTQ 117 (324)
T ss_dssp -----------------TTCCEEEEEHHHHHHHHHHHHH------HTCHHHHHH-H--HHTCSEEEEECGGGGTTCHHHH
T ss_pred -----------------CCCEEEEEEHHHHHHHHHHHHH------cCcHHHHHH-H--hcCCCEEEEcCcccccCChHHH
Confidence 1234444443322222222110 0000 0000 0 12367999999999986 778
Q ss_pred HHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC--CCcchHHHhhhh--cceeecCCCCHhhHHHHHHHHHHHHHh
Q 004256 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQER 317 (765)
Q Consensus 242 ~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e--g~l~~~L~dRf~--~~v~i~~p~~~e~r~dI~~l~~~~~~~ 317 (765)
..|+..++... ..| ..++++++++-. ..+.++|++||. ..+.+. | +.+++.+|+....
T Consensus 118 ~~l~~~l~~~~----~~~-------~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~-~-~~~e~~~il~~~~----- 179 (324)
T 1l8q_A 118 IEFFHIFNTLY----LLE-------KQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE-L-DNKTRFKIIKEKL----- 179 (324)
T ss_dssp HHHHHHHHHHH----HTT-------CEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC-C-CHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHH----HCC-------CeEEEEecCChHHHHHhhhHhhhcccCceEEEeC-C-CHHHHHHHHHHHH-----
Confidence 88888775421 011 124445544322 368899999997 444454 4 6666666554221
Q ss_pred hHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH--HH--HcCCCCC-CH
Q 004256 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL--AA--LEGREKV-NV 392 (765)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~--A~--l~gr~~V-t~ 392 (765)
.. .++.++++++++|+..+ . +.|.+..++..+.+. .+ +.+...| +.
T Consensus 180 --------------------~~----~~~~l~~~~l~~l~~~~--g---~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~ 230 (324)
T 1l8q_A 180 --------------------KE----FNLELRKEVIDYLLENT--K---NVREIEGKIKLIKLKGFEGLERKERKERDKL 230 (324)
T ss_dssp --------------------HH----TTCCCCHHHHHHHHHHC--S---SHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred --------------------Hh----cCCCCCHHHHHHHHHhC--C---CHHHHHHHHHHHHHcCHHHhccccccCCCCH
Confidence 00 14678888888887765 2 358877777766554 00 1233468 88
Q ss_pred HHHHHHHHH
Q 004256 393 DDLKKAVEL 401 (765)
Q Consensus 393 edv~~A~~l 401 (765)
++|.+++.-
T Consensus 231 ~~i~~~~~~ 239 (324)
T 1l8q_A 231 MQIVEFVAN 239 (324)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888764
No 88
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.36 E-value=8e-13 Score=148.39 Aligned_cols=219 Identities=17% Similarity=0.184 Sum_probs=136.4
Q ss_pred CCCCCCcee-echH--HHHHHHHhhhcCC-CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccc
Q 004256 90 QFFPLAAVV-GQDA--IKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (765)
Q Consensus 90 ~~~~f~~iv-G~~~--~~~aL~l~~~~~~-~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (765)
..+.|+.++ |++. +..++...+-.+. ..+++|+||+|||||++|++|+..+... .
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~----------~----------- 158 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN----------E----------- 158 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH----------C-----------
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh----------C-----------
Confidence 346788887 7554 3333322222333 5689999999999999999999875310 0
Q ss_pred cccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceee--c-cCCeEeccccccCCH--HH
Q 004256 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE--A-HRGVLYIDEINLLDE--GI 240 (765)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~--A-~~GiL~lDEi~~L~~--~~ 240 (765)
...+++.+++.....++.+.+ ..+.. ..+.. . ...+||||||+.+.. ..
T Consensus 159 ----------------~~~~v~~v~~~~~~~~~~~~~------~~~~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~ 212 (440)
T 2z4s_A 159 ----------------PDLRVMYITSEKFLNDLVDSM------KEGKL----NEFREKYRKKVDILLIDDVQFLIGKTGV 212 (440)
T ss_dssp ----------------CSSCEEEEEHHHHHHHHHHHH------HTTCH----HHHHHHHTTTCSEEEEECGGGGSSCHHH
T ss_pred ----------------CCCeEEEeeHHHHHHHHHHHH------HcccH----HHHHHHhcCCCCEEEEeCcccccCChHH
Confidence 123344433322222222211 11100 00111 1 457999999999986 78
Q ss_pred HHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCC--CCCcchHHHhhhh--cceeecCCCCHhhHHHHHHHHHHHHH
Q 004256 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE--EGVVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQE 316 (765)
Q Consensus 241 q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~--eg~l~~~L~dRf~--~~v~i~~p~~~e~r~dI~~l~~~~~~ 316 (765)
|+.|+..++.-. ..| ..+||++.++. -..+.+.|++||. ..+.+. |++.+.+.+|+.....
T Consensus 213 q~~l~~~l~~l~----~~~-------~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~-~p~~e~r~~iL~~~~~--- 277 (440)
T 2z4s_A 213 QTELFHTFNELH----DSG-------KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLE-PPDEETRKSIARKMLE--- 277 (440)
T ss_dssp HHHHHHHHHHHH----TTT-------CEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCC-CCCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHH----HCC-------CeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeC-CCCHHHHHHHHHHHHH---
Confidence 888888875421 011 13445544432 1348899999996 566676 5677777776653211
Q ss_pred hhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 004256 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (765)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~ 396 (765)
. .++.++++++++|+..+ +. +.|.++.+++.+.+.|...|+ .|+.++++
T Consensus 278 ----------------------~----~~~~i~~e~l~~la~~~---~g-n~R~l~~~L~~~~~~a~~~~~-~It~~~~~ 326 (440)
T 2z4s_A 278 ----------------------I----EHGELPEEVLNFVAENV---DD-NLRRLRGAIIKLLVYKETTGK-EVDLKEAI 326 (440)
T ss_dssp ----------------------H----HTCCCCTTHHHHHHHHC---CS-CHHHHHHHHHHHHHHHHHSSS-CCCHHHHH
T ss_pred ----------------------H----cCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHHHHHHhCC-CCCHHHHH
Confidence 0 14678888888887654 22 679999999999999998886 69999999
Q ss_pred HHHHH
Q 004256 397 KAVEL 401 (765)
Q Consensus 397 ~A~~l 401 (765)
+++.-
T Consensus 327 ~~l~~ 331 (440)
T 2z4s_A 327 LLLKD 331 (440)
T ss_dssp HHTST
T ss_pred HHHHH
Confidence 88764
No 89
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=99.34 E-value=2.9e-12 Score=147.42 Aligned_cols=104 Identities=13% Similarity=0.201 Sum_probs=75.3
Q ss_pred cCCceEEEEEeCCCCCCc----hhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhhcCCC
Q 004256 559 KAGALVIFVVDASGSMAL----NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLPC 632 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~----~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~--~~~~~~~~l~~l~~ 632 (765)
..+.+++||||+||||.. +++.. +.++..+....+..+|+|+||.|++. ...+|++. +...+...|..+ +
T Consensus 366 ~~~~~v~lvvD~SgSM~~~~~~~~l~~-~~~Aa~l~~~~~~~~d~vglv~Fs~~--~~~~~~t~~~~l~~~l~~l~~~-~ 441 (538)
T 1yvr_A 366 PTGKRFLLAIDVSASMNQRVLGSILNA-SVVAAAMCMLVARTEKDSHMVAFSDE--MLPCPITVNMLLHEVVEKMSDI-T 441 (538)
T ss_dssp CCCCCEEEEEECSGGGGSBSTTSSCBH-HHHHHHHHHHHHHHCSSEEEEEESSS--EECCSCCTTSCHHHHHHHHTTC-C
T ss_pred CCCceEEEEEECccccCCCCCCCcHHH-HHHHHHHHHHHhccCCceEEEEECCC--ceEcCCCCcccHHHHHHHHhcC-C
Confidence 467899999999999963 35555 44433333335678999999999974 44556664 556666666665 6
Q ss_pred CCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCC
Q 004256 633 GGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANIS 674 (765)
Q Consensus 633 gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~ 674 (765)
+|||+++.+|..|++. .. ...+|||||||..|.+
T Consensus 442 ~GgT~i~~aL~~a~~~----~~----~~~~iIliTDg~~~~g 475 (538)
T 1yvr_A 442 MGSTDCALPMLWAQKT----NT----AADIFIVFTDCETNVE 475 (538)
T ss_dssp CSCCCTTHHHHHHHHT----TC----CCSEEEEEECCCCCSS
T ss_pred CCCCcHHHHHHHHHhc----cC----CCCEEEEEcCCCCCCC
Confidence 8999999999998764 11 1347999999998864
No 90
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.34 E-value=2.2e-13 Score=161.42 Aligned_cols=154 Identities=18% Similarity=0.222 Sum_probs=103.8
Q ss_pred CCCCCceeechHHHHHHHHhhhcC-------------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCC
Q 004256 91 FFPLAAVVGQDAIKTALLLGAIDR-------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~l~~~~~-------------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~ 157 (765)
...|.+|.|.+.+++.|.-....| ...+|||+||||||||++|++|+..+
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~----------------- 535 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------------- 535 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT-----------------
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh-----------------
Confidence 456889999999999984222211 23569999999999999999999975
Q ss_pred CCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEeccccc
Q 004256 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEIN 234 (765)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~ 234 (765)
..+|+.+......+.++|.- ++ ...-+|..| ...|||||||+
T Consensus 536 -------------------------~~~f~~v~~~~l~s~~vGes--e~--------~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 536 -------------------------QANFISIKGPELLTMWFGES--EA--------NVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp -------------------------TCEEEECCHHHHHTTTCSSC--HH--------HHHHHHHHHHTTCSEEEECSCGG
T ss_pred -------------------------CCceEEeccchhhccccchH--HH--------HHHHHHHHHHHcCCceeechhhh
Confidence 35677665544444455521 11 111233333 35799999999
Q ss_pred cCCH--------------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCC
Q 004256 235 LLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (765)
Q Consensus 235 ~L~~--------------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p 298 (765)
.+-. .+.+.||..|+.-. ...++.|||||| .+..++++|+. ||+..+.+.+
T Consensus 581 sl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~-----------~~~~V~vi~aTN-~p~~lD~AllRpgRfd~~i~v~l- 647 (806)
T 3cf2_A 581 SIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVFIIGATN-RPDIIDPAILRPGRLDQLIYIPL- 647 (806)
T ss_dssp GCC--------------CHHHHHHHHHHHSSC-----------SSSSEEEECC-C-CSSSSCHHHHSTTTSCCEEEC---
T ss_pred HHhhccCCCCCCCchHHHHHHHHHHHHHhCCC-----------CCCCEEEEEeCC-CchhCCHhHcCCCcceEEEEECC-
Confidence 8732 35788888887422 123578999999 67789999998 9999998885
Q ss_pred CCHhhHHHHHH
Q 004256 299 MTFEDRVAAVG 309 (765)
Q Consensus 299 ~~~e~r~dI~~ 309 (765)
|+.+.|.+|+.
T Consensus 648 Pd~~~R~~il~ 658 (806)
T 3cf2_A 648 PDEKSRVAILK 658 (806)
T ss_dssp ---CHHHHTTT
T ss_pred cCHHHHHHHHH
Confidence 47777877764
No 91
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.34 E-value=3.5e-12 Score=153.07 Aligned_cols=229 Identities=19% Similarity=0.217 Sum_probs=141.5
Q ss_pred CCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccc
Q 004256 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (765)
..|+.++|++..++.+.-........++||+||||||||++|++++..+.... ++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~-v~------------------------ 237 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGD-VP------------------------ 237 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTC-SC------------------------
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCC-CC------------------------
Confidence 45788999999888885444445678899999999999999999998753100 00
Q ss_pred cccCcccccccCCCeEeCCCCCcc--cceeeecccccccccCCCcccCCceeeccCCeEeccccccC---------CHHH
Q 004256 172 DTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL---------DEGI 240 (765)
Q Consensus 172 ~~~~~~~~~~~~~~~v~l~~~~~e--~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L---------~~~~ 240 (765)
.......++.++.+... ....|.. +..+ ......+..+.+++|||||++.| ..+.
T Consensus 238 -------~~~~~~~~~~~~~~~l~~~~~~~g~~--e~~l-----~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~ 303 (758)
T 1r6b_X 238 -------EVMADCTIYSLDIGSLLAGTKYRGDF--EKRF-----KALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDA 303 (758)
T ss_dssp -------GGGTTCEEEECCCC---CCCCCSSCH--HHHH-----HHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHH
T ss_pred -------hhhcCCEEEEEcHHHHhccccccchH--HHHH-----HHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHH
Confidence 00012233333332211 0111100 0000 00001112234689999999998 3455
Q ss_pred HHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC--C--CcchHHHhhhhcceeecCCCCHhhHHHHHHHHH-HHH
Q 004256 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--G--VVREHLLDRIAINLSADLPMTFEDRVAAVGIAT-QFQ 315 (765)
Q Consensus 241 q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e--g--~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~-~~~ 315 (765)
++.|..+++.+ .+++|+++|+.+ + ..+++|++||.. +.+.. |+.+.+.+|+.... .|.
T Consensus 304 ~~~L~~~l~~~---------------~~~~I~at~~~~~~~~~~~d~aL~~Rf~~-i~v~~-p~~~e~~~il~~l~~~~~ 366 (758)
T 1r6b_X 304 ANLIKPLLSSG---------------KIRVIGSTTYQEFSNIFEKDRALARRFQK-IDITE-PSIEETVQIINGLKPKYE 366 (758)
T ss_dssp HHHHSSCSSSC---------------CCEEEEEECHHHHHCCCCCTTSSGGGEEE-EECCC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---------------CeEEEEEeCchHHhhhhhcCHHHHhCceE-EEcCC-CCHHHHHHHHHHHHHHHH
Confidence 56665555543 367899998643 2 355789999985 57874 56666666665321 111
Q ss_pred HhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCC--CCCChHHHHHHHHHHHHHH----cCCCC
Q 004256 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC--QGHRAELYAARVAKCLAAL----EGREK 389 (765)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~--~s~Ra~i~llr~A~a~A~l----~gr~~ 389 (765)
...++.+++++++.++.++...-. ..+...+.++..|.+.+.+ .+...
T Consensus 367 --------------------------~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~ 420 (758)
T 1r6b_X 367 --------------------------AHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKT 420 (758)
T ss_dssp --------------------------HHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCS
T ss_pred --------------------------HhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCc
Confidence 012578889999999888766422 1234678888888877777 45678
Q ss_pred CCHHHHHHHHHHh
Q 004256 390 VNVDDLKKAVELV 402 (765)
Q Consensus 390 Vt~edv~~A~~lv 402 (765)
|+.+|+..++...
T Consensus 421 v~~~di~~~~~~~ 433 (758)
T 1r6b_X 421 VNVADIESVVARI 433 (758)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHh
Confidence 9999999998764
No 92
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.31 E-value=2.3e-11 Score=132.98 Aligned_cols=229 Identities=21% Similarity=0.217 Sum_probs=131.4
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCC-CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~-~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (765)
.++..|++++|++..+..|.-...... .+.+||+||+|||||++|+.+++.+...... ...+| ..|..|..
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~--~~~~~------~~~~~~~~ 81 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI--TATPC------GVCDNCRE 81 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCS--CSSCC------SSSHHHHH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCC--CCCCC------cccHHHHH
Confidence 455678899999999988843333222 3458999999999999999999876421000 00011 11222221
Q ss_pred cccccccCcccccccCCCeEeCCCCC--cccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHH
Q 004256 168 KAEYDTAGNLKTQIARSPFVQIPLGV--TEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (765)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~l~~~~--~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll 245 (765)
... + ....++.+.... ..+.+ +.+.... ...+ ......+++|||++.|+...++.|+
T Consensus 82 ~~~----~------~~~~~~~~~~~~~~~~~~~-------~~l~~~~-~~~~---~~~~~~vliiDe~~~l~~~~~~~Ll 140 (373)
T 1jr3_A 82 IEQ----G------RFVDLIEIDAASRTKVEDT-------RDLLDNV-QYAP---ARGRFKVYLIDEVHMLSRHSFNALL 140 (373)
T ss_dssp HHT----S------CCSSCEEEETTCSCCSSCH-------HHHHHHT-TSCC---SSSSSEEEEEECGGGSCHHHHHHHH
T ss_pred Hhc----c------CCCceEEecccccCCHHHH-------HHHHHHH-hhcc---ccCCeEEEEEECcchhcHHHHHHHH
Confidence 110 0 011122211110 00000 0000000 0000 0123469999999999999999999
Q ss_pred HHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhccc
Q 004256 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (765)
Q Consensus 246 ~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~ 325 (765)
..+++. +.++++|.++| ....+.+.+++|+.. +.+. |+..++..+++. .+
T Consensus 141 ~~le~~-------------~~~~~~Il~~~-~~~~l~~~l~sr~~~-i~~~-~l~~~~~~~~l~---~~----------- 190 (373)
T 1jr3_A 141 KTLEEP-------------PEHVKFLLATT-DPQKLPVTILSRCLQ-FHLK-ALDVEQIRHQLE---HI----------- 190 (373)
T ss_dssp HHHHSC-------------CSSEEEEEEES-CGGGSCHHHHTTSEE-EECC-CCCHHHHHHHHH---HH-----------
T ss_pred HHHhcC-------------CCceEEEEEeC-ChHhCcHHHHhheeE-eeCC-CCCHHHHHHHHH---HH-----------
Confidence 999862 34567888877 445778899999843 4565 445544333332 11
Q ss_pred cccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004256 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 326 ~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
+.. .++.+++++++.+++.+ +. +.|..+.+++.+.. .+...|+.++|.+++
T Consensus 191 -----------~~~----~~~~~~~~a~~~l~~~~---~G-~~r~~~~~l~~~~~----~~~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 191 -----------LNE----EHIAHEPRALQLLARAA---EG-SLRDALSLTDQAIA----SGDGQVSTQAVSAML 241 (373)
T ss_dssp -----------HHH----HTCCBCHHHHHHHHHHS---SS-CHHHHHHHHHHHHH----HTTTCBCHHHHHHHT
T ss_pred -----------HHH----cCCCCCHHHHHHHHHHC---CC-CHHHHHHHHHHHHH----hcCCcccHHHHHHHh
Confidence 111 14678888888887664 33 57888777766532 234679999998765
No 93
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.31 E-value=3.4e-12 Score=136.22 Aligned_cols=211 Identities=21% Similarity=0.198 Sum_probs=130.7
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (765)
.++..|++++|++..++.|.-........++||+||+|||||++|+.+++.+....
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~------------------------ 66 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN------------------------ 66 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC------------------------
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc------------------------
Confidence 45667889999999999885444444455799999999999999999998752100
Q ss_pred ccccccCcccccccCCCeEeCCCCCc--ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHH
Q 004256 169 AEYDTAGNLKTQIARSPFVQIPLGVT--EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (765)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~l~~~~~--e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~ 246 (765)
...+|+.+++... .+.+...+ .... ....+.....+++||||++.++...++.|+.
T Consensus 67 -------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~ 124 (319)
T 2chq_A 67 -------------WRDNFIEMNASDERGIDVVRHKI---KEFA------RTAPIGGAPFKIIFLDEADALTADAQAALRR 124 (319)
T ss_dssp -------------HHHHCEEEETTSTTCTTTSSHHH---HHHH------HSCCSSSCCCEEEEEETGGGSCHHHHHTTGG
T ss_pred -------------ccCCeEEEeCccccChHHHHHHH---HHHH------hcCCCCCCCceEEEEeCCCcCCHHHHHHHHH
Confidence 0111222222110 00000000 0000 0001122346799999999999999999999
Q ss_pred HHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcccc
Q 004256 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (765)
Q Consensus 247 ~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~ 326 (765)
++++. +.++++|.++|. ...+.+.|.+|+.. +.+. |+..++..+++. .+
T Consensus 125 ~le~~-------------~~~~~~i~~~~~-~~~l~~~l~sr~~~-i~~~-~~~~~~~~~~l~---~~------------ 173 (319)
T 2chq_A 125 TMEMY-------------SKSCRFILSCNY-VSRIIEPIQSRCAV-FRFK-PVPKEAMKKRLL---EI------------ 173 (319)
T ss_dssp GTSSS-------------SSSEEEEEEESC-GGGSCHHHHTTCEE-EECC-CCCHHHHHHHHH---HH------------
T ss_pred HHHhc-------------CCCCeEEEEeCC-hhhcchHHHhhCeE-EEec-CCCHHHHHHHHH---HH------------
Confidence 88752 245778888884 45788999999974 4665 445544433332 11
Q ss_pred ccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004256 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 327 ~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
+. -.++.+++++++.++..+ +. +.|.++.+++.+. .. ...|+.++|..++
T Consensus 174 ----------~~----~~~~~i~~~~l~~l~~~~---~G-~~r~~~~~l~~~~---~~--~~~i~~~~v~~~~ 223 (319)
T 2chq_A 174 ----------CE----KEGVKITEDGLEALIYIS---GG-DFRKAINALQGAA---AI--GEVVDADTIYQIT 223 (319)
T ss_dssp ----------HH----TTCCCBCHHHHHHHHHTT---TT-CHHHHHHHHHHHH---HS--SSCBCHHHHHHHT
T ss_pred ----------HH----HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH---Hc--CCCCCHHHHHHHH
Confidence 11 124678888888887443 22 4677777776543 22 3479999997764
No 94
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=99.30 E-value=3e-12 Score=129.40 Aligned_cols=94 Identities=22% Similarity=0.300 Sum_probs=82.0
Q ss_pred ccCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhh--cCCCCeEEEEEeeCCC--cEEEc-CCCccHHHHHHHhhcCCC
Q 004256 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDS--AEVLL-PPSRSIAMARKRLERLPC 632 (765)
Q Consensus 558 ~~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~--~~~~d~v~lv~F~~~~--a~~~~-p~t~~~~~~~~~l~~l~~ 632 (765)
...+.+|+||||+||||. .||..+|+++..++.+. +..+++|+||+|+++. +..++ |+|.+. .+...+..|++
T Consensus 131 e~~~~~vvfLVDtSgSM~-~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~-~~~~~l~~L~a 208 (242)
T 3rag_A 131 DEVALHLVVCLDTSASMR-DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV-NVAALEAELVA 208 (242)
T ss_dssp HHSCEEEEEEEECSGGGT-TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC-CHHHHHHHCCC
T ss_pred ccCCCCEEEEEECcccHH-HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH-HHHHHHhhCCC
Confidence 347899999999999998 69999999999999865 4468999999999873 45565 999887 88899999999
Q ss_pred CCCChhHHHHHHHHHHHHhhh
Q 004256 633 GGGSPLAHGLSMAVRVGLNAE 653 (765)
Q Consensus 633 gG~T~l~~aL~~A~~~l~~~~ 653 (765)
||+||++.||..|++++.+..
T Consensus 209 gG~Tplg~AL~~A~~~~~~~~ 229 (242)
T 3rag_A 209 RGGTPTGPAIDHAADLLLSHA 229 (242)
T ss_dssp CSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHh
Confidence 999999999999999986543
No 95
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=1.7e-12 Score=142.62 Aligned_cols=132 Identities=17% Similarity=0.200 Sum_probs=91.8
Q ss_pred eEeccccccCCHHH-HHH-HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC--CCcchHHHhhhhcceeecCCCCHh
Q 004256 227 VLYIDEINLLDEGI-SNL-LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAINLSADLPMTFE 302 (765)
Q Consensus 227 iL~lDEi~~L~~~~-q~~-Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e--g~l~~~L~dRf~~~v~i~~p~~~e 302 (765)
+|||||++.+.... ++. |..++... .++++|+++|..+ ..+.+.++.||+..+.+. |++.+
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~--------------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~-~l~~~ 200 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD--------------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFK-PYDAE 200 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS--------------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEEC-CCCHH
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC--------------cceEEEEEECCCchHhhhCHHHHhcCCCeEEEC-CCCHH
Confidence 99999999986542 444 43433321 3578899988543 568899999998766665 55555
Q ss_pred hHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q 004256 303 DRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLA 382 (765)
Q Consensus 303 ~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A 382 (765)
+..+|+.. +.. .......+++++++.++.++..... ..|..+.+++.|..+|
T Consensus 201 ~~~~il~~---~~~------------------------~~~~~~~~~~~~~~~i~~~~~~~~G-~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 201 QLKFILSK---YAE------------------------YGLIKGTYDDEILSYIAAISAKEHG-DARKAVNLLFRAAQLA 252 (384)
T ss_dssp HHHHHHHH---HHH------------------------HTSCTTSCCSHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH---HHH------------------------hhcccCCcCHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHh
Confidence 55454432 110 0112357888999999988864433 5799999999998887
Q ss_pred HHcCCCCCCHHHHHHHHHHhc
Q 004256 383 ALEGREKVNVDDLKKAVELVI 403 (765)
Q Consensus 383 ~l~gr~~Vt~edv~~A~~lvl 403 (765)
. +...|+.+||..++..+.
T Consensus 253 ~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 253 S--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp T--SSSCCCHHHHHHHHHHHH
T ss_pred c--CCCccCHHHHHHHHHHHh
Confidence 6 777999999999987653
No 96
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.26 E-value=1.3e-12 Score=137.04 Aligned_cols=152 Identities=18% Similarity=0.278 Sum_probs=88.3
Q ss_pred CCceeechHHHHHHH------Hhhh----cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccc
Q 004256 94 LAAVVGQDAIKTALL------LGAI----DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (765)
Q Consensus 94 f~~ivG~~~~~~aL~------l~~~----~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 163 (765)
+..++|+++.++.+. ...+ .....+|||+||+|||||++|++++..+.
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~---------------------- 89 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN---------------------- 89 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT----------------------
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC----------------------
Confidence 456899988655542 1122 34456799999999999999999998742
Q ss_pred cccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceee---ccCCeEeccccccC----
Q 004256 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDEINLL---- 236 (765)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~---A~~GiL~lDEi~~L---- 236 (765)
.+|+.+.+. +.++|... ....+ ....++.. ..+++||||||+.|
T Consensus 90 --------------------~~~~~i~~~---~~~~g~~~---~~~~~---~~~~~~~~~~~~~~~vl~iDEid~l~~~~ 140 (272)
T 1d2n_A 90 --------------------FPFIKICSP---DKMIGFSE---TAKCQ---AMKKIFDDAYKSQLSCVVVDDIERLLDYV 140 (272)
T ss_dssp --------------------CSEEEEECG---GGCTTCCH---HHHHH---HHHHHHHHHHTSSEEEEEECCHHHHTTCB
T ss_pred --------------------CCEEEEeCH---HHhcCCch---HHHHH---HHHHHHHHHHhcCCcEEEEEChhhhhccC
Confidence 345544332 23444210 00000 00111211 34689999999987
Q ss_pred ------CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcch-HHHhhhhcceeecCCCCHhhHHHHHH
Q 004256 237 ------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVRE-HLLDRIAINLSADLPMTFEDRVAAVG 309 (765)
Q Consensus 237 ------~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~-~L~dRf~~~v~i~~p~~~e~r~dI~~ 309 (765)
...+++.|+..++... ..+.++++|+|+|.. ..+.+ .+..||...+ .+|++.++ .+|..
T Consensus 141 ~~~~~~~~~~l~~L~~~~~~~~----------~~~~~~~ii~ttn~~-~~l~~~~l~~rf~~~i--~~p~l~~r-~~i~~ 206 (272)
T 1d2n_A 141 PIGPRFSNLVLQALLVLLKKAP----------PQGRKLLIIGTTSRK-DVLQEMEMLNAFSTTI--HVPNIATG-EQLLE 206 (272)
T ss_dssp TTTTBCCHHHHHHHHHHTTCCC----------STTCEEEEEEEESCH-HHHHHTTCTTTSSEEE--ECCCEEEH-HHHHH
T ss_pred CCChhHHHHHHHHHHHHhcCcc----------CCCCCEEEEEecCCh-hhcchhhhhcccceEE--cCCCccHH-HHHHH
Confidence 4455566666554211 012357899999953 23333 5678997664 44665553 55554
Q ss_pred H
Q 004256 310 I 310 (765)
Q Consensus 310 l 310 (765)
+
T Consensus 207 i 207 (272)
T 1d2n_A 207 A 207 (272)
T ss_dssp H
T ss_pred H
Confidence 3
No 97
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=99.26 E-value=1.6e-11 Score=140.85 Aligned_cols=152 Identities=15% Similarity=0.131 Sum_probs=97.4
Q ss_pred cCCceEEEEEeCCCCCCc-h-----hHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhhcC
Q 004256 559 KAGALVIFVVDASGSMAL-N-----RMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERL 630 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~-~-----rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~~p~t~--~~~~~~~~l~~l 630 (765)
..+..++++||+||||.. . ++..++ ++..+........|+++||.|++. . ..+|.+. ....+...|...
T Consensus 360 ~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e-~Aa~la~~~~r~~d~v~lv~Fs~~-~-~~~~~~~~~~l~~~l~~l~~~ 436 (535)
T 2nvo_A 360 PANTRHLLALDVSGSMTCGDVAGVPGLTPNM-AAAAMSLIALRTEPDALTMGFAEQ-F-RPLGITPRDTLESAMQKAQSV 436 (535)
T ss_dssp CCCSEEEEEECCSGGGGSCCGGGCTTCCHHH-HHHHHHHHHHHHSSEEEEEEEBSS-E-EECCCCTTCCHHHHHHHTCCS
T ss_pred CCCceEEEEEECCccccCCCCCCCCcccHHH-HHHHHHHHHcCcCCceEEEEECCc-c-eEcCCCcchhHHHHHHHHhhC
Confidence 467899999999999964 1 233222 222333334567899999999985 3 2345553 444444445443
Q ss_pred CCCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhC
Q 004256 631 PCGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKA 710 (765)
Q Consensus 631 ~~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 710 (765)
. +|||+++.+|..+.+. ... .-+|||||||..|.+... . .++.+..++....
T Consensus 437 ~-~ggTdi~~~l~~a~~~----~~~----~~~vIliTD~~~~~g~~~------------------~-~~al~~~r~~~~~ 488 (535)
T 2nvo_A 437 S-FGGTDCAQPILWAAQE----RLD----VDTFVVYTDNETWAGQVH------------------P-TVALDQYAQKMGR 488 (535)
T ss_dssp S-BCCCCTTHHHHHHHHT----TCC----CSEEEEEESSCCCCCSSC------------------H-HHHHHHHHHHHSC
T ss_pred C-CCCccHHHHHHHHHHh----cCC----CCEEEEEeCCCccCCCCC------------------H-HHHHHHHHHhhCC
Confidence 3 7999999998776432 111 237899999998875321 1 2334444433345
Q ss_pred CCEEEEEeCCCCC----------------CCHHHHHHHHHHcCCeEE
Q 004256 711 GMSLLVIDTENKF----------------VSTGFAKEIARVAQGKYY 741 (765)
Q Consensus 711 gi~~~vig~~~~~----------------~~~~~l~~LA~~~gG~y~ 741 (765)
++.+++|+.+... ++...++.||+.++|.|+
T Consensus 489 ~~klv~i~l~~~~~~~~~~~~~~~~~i~g~se~~l~~Ia~~~~G~~~ 535 (535)
T 2nvo_A 489 APKLIVVGLTATEFSIADPQRRDMLDVVGFDAAAPNVMTAFARGEVL 535 (535)
T ss_dssp CCEEEEEETTCSCCCCSCTTCSSEEEEEECCTTHHHHHHHHHTTCC-
T ss_pred CCeEEEEeccCCCcccCCCCCCCceeeeCCCHHHHHHHHHHhCCCcC
Confidence 7999999977421 245789999999999885
No 98
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.24 E-value=3.3e-11 Score=131.82 Aligned_cols=242 Identities=16% Similarity=0.091 Sum_probs=140.3
Q ss_pred CCCCceeechHHHHHHHHhhh----cCCCCcEEEECCCCcHHHHHHHHHHhhCCCcc--hhcccccCCCCCCCCcccccc
Q 004256 92 FPLAAVVGQDAIKTALLLGAI----DREIGGIAISGRRGTAKTVMARGLHAILPPIE--VVVGSIANADPTCPDEWEDGL 165 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~~----~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~ 165 (765)
+.++.++|++..+..|.-... ......|+|+|++|||||++++.++..+.... ......++|...... ...+
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~ 94 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTP--YRVL 94 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSH--HHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCH--HHHH
Confidence 445789999999888842222 33456799999999999999999998763100 011112232110000 0000
Q ss_pred cccccccccCcccccccCCCeEeCC-CCCcccceeeecccccccccCCCcccCCceeecc-CCeEeccccccCC----HH
Q 004256 166 DEKAEYDTAGNLKTQIARSPFVQIP-LGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH-RGVLYIDEINLLD----EG 239 (765)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~l~-~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~-~GiL~lDEi~~L~----~~ 239 (765)
. .+ ...... ..+ .+.+...++..+ ...+.... ..+|+|||++.+. ..
T Consensus 95 ~-~i-----------~~~l~~-~~~~~~~~~~~~~~~l--------------~~~l~~~~~~~vlilDE~~~l~~~~~~~ 147 (386)
T 2qby_A 95 A-DL-----------LESLDV-KVPFTGLSIAELYRRL--------------VKAVRDYGSQVVIVLDEIDAFVKKYNDD 147 (386)
T ss_dssp H-HH-----------TTTTSC-CCCSSSCCHHHHHHHH--------------HHHHHTCCSCEEEEEETHHHHHHSSCST
T ss_pred H-HH-----------HHHhCC-CCCCCCCCHHHHHHHH--------------HHHHhccCCeEEEEEcChhhhhccCcCH
Confidence 0 00 000000 000 000000000000 00011111 3489999999985 56
Q ss_pred HHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC--CCcchHHHhhhhc-ceeecCCCCHhhHHHHHHHHHHHHH
Q 004256 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAI-NLSADLPMTFEDRVAAVGIATQFQE 316 (765)
Q Consensus 240 ~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e--g~l~~~L~dRf~~-~v~i~~p~~~e~r~dI~~l~~~~~~ 316 (765)
.+..|+..++... ..++.+|+++|..+ ..+.+.+..||.. .+.+. |++.++..+++.. +..
T Consensus 148 ~l~~l~~~~~~~~------------~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~-~l~~~~~~~il~~---~~~ 211 (386)
T 2qby_A 148 ILYKLSRINSEVN------------KSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFP-PYNAEELEDILTK---RAQ 211 (386)
T ss_dssp HHHHHHHHHHSCC------------C--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEEC-CCCHHHHHHHHHH---HHH
T ss_pred HHHHHhhchhhcC------------CCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeC-CCCHHHHHHHHHH---HHH
Confidence 7778888776421 12467888888543 4567889999965 44554 4555555555432 110
Q ss_pred hhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 004256 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (765)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~ 396 (765)
.......++++++++++.++...+. ++|..+.+++.+..+|..++...|+.+|+.
T Consensus 212 ------------------------~~~~~~~~~~~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~ 266 (386)
T 2qby_A 212 ------------------------MAFKPGVLPDNVIKLCAALAAREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVY 266 (386)
T ss_dssp ------------------------HHBCSSCSCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred ------------------------hhccCCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHH
Confidence 0112357889999999988865323 579999999999999998899999999999
Q ss_pred HHHHHhc
Q 004256 397 KAVELVI 403 (765)
Q Consensus 397 ~A~~lvl 403 (765)
.|+..+.
T Consensus 267 ~a~~~~~ 273 (386)
T 2qby_A 267 MAKEEIE 273 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987654
No 99
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.24 E-value=1.5e-12 Score=154.26 Aligned_cols=154 Identities=19% Similarity=0.212 Sum_probs=103.7
Q ss_pred CCCCCceeechHHHHHHH----HhhhcC---------CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCC
Q 004256 91 FFPLAAVVGQDAIKTALL----LGAIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~----l~~~~~---------~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~ 157 (765)
...|++|.|.+..++.|. +-...| ...+|||+||||||||++||+|+..+.
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg---------------- 263 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---------------- 263 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT----------------
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC----------------
Confidence 457899999998887772 111111 235799999999999999999998753
Q ss_pred CCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEeccccc
Q 004256 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEIN 234 (765)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi~ 234 (765)
.+|+.+.+....+.+.|.. ++ ....++..| ...|||||||+
T Consensus 264 --------------------------~~~~~v~~~~l~sk~~ges--e~--------~lr~lF~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 264 --------------------------AFFFLINGPEIMSKLAGES--ES--------NLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp --------------------------CEEEEEEHHHHHSSCTTHH--HH--------HHHHHHHHHTTSCSEEEEEESGG
T ss_pred --------------------------CeEEEEEhHHhhcccchHH--HH--------HHHHHHHHHHHcCCeEEEEehhc
Confidence 3555544432222333310 00 011122333 24699999999
Q ss_pred cCCH-----------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCCH
Q 004256 235 LLDE-----------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTF 301 (765)
Q Consensus 235 ~L~~-----------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~~ 301 (765)
.+-+ .+.+.|+..|+.-. ...++.||++|| ....++++|+. ||+..+++.. |+.
T Consensus 308 al~~~r~~~~~~~~~riv~~LL~~mdg~~-----------~~~~V~VIaaTN-~~d~LD~ALrR~GRFd~~I~i~~-Pd~ 374 (806)
T 3cf2_A 308 AIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATN-RPNSIDPALRRFGRFDREVDIGI-PDA 374 (806)
T ss_dssp GTCCTTTTCCCTTHHHHHHHHHTHHHHCC-----------GGGCEEEEEECS-STTTSCTTTTSTTSSCEEEECCC-CCH
T ss_pred ccccccCCCCChHHHHHHHHHHHHHhccc-----------ccCCEEEEEecC-ChhhcCHHHhCCcccceEEecCC-CCH
Confidence 8842 46778888887532 112578999999 66778899987 9999988885 588
Q ss_pred hhHHHHHH
Q 004256 302 EDRVAAVG 309 (765)
Q Consensus 302 e~r~dI~~ 309 (765)
+.|.+|+.
T Consensus 375 ~~R~~IL~ 382 (806)
T 3cf2_A 375 TGRLEILQ 382 (806)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888875
No 100
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=5.1e-11 Score=136.48 Aligned_cols=223 Identities=12% Similarity=0.070 Sum_probs=122.1
Q ss_pred CCCCCCCceeechHHHHHHHHhhhc-----------------CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAID-----------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIA 151 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~-----------------~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~ 151 (765)
.++..|++|+|++..++.|.-.... +...++||+||+|||||++|+++++.+.. ....+
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~----~~i~i 108 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY----DILEQ 108 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC----EEEEE
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC----CEEEE
Confidence 4566789999999988887322111 12367999999999999999999998731 11122
Q ss_pred CCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEecc
Q 004256 152 NADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYID 231 (765)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lD 231 (765)
||....... .....+ ....+...+ ...+.... ..+.....+.+||||
T Consensus 109 n~s~~~~~~---~~~~~i--------------------------~~~~~~~~~-~~~~~~~~---~~~~~~~~~~vliID 155 (516)
T 1sxj_A 109 NASDVRSKT---LLNAGV--------------------------KNALDNMSV-VGYFKHNE---EAQNLNGKHFVIIMD 155 (516)
T ss_dssp CTTSCCCHH---HHHHTG--------------------------GGGTTBCCS-TTTTTC-------CCSSTTSEEEEEC
T ss_pred eCCCcchHH---HHHHHH--------------------------HHHhccccH-HHHHhhhh---hhhhccCCCeEEEEE
Confidence 331100000 000000 000000000 00000000 011122356799999
Q ss_pred ccccCCHHHH---HHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHH
Q 004256 232 EINLLDEGIS---NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (765)
Q Consensus 232 Ei~~L~~~~q---~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~ 308 (765)
||+.|+...+ ..|+.+++... ..+++|++.. ....++ .| .|+...+.+. |++.+...+++
T Consensus 156 Eid~l~~~~~~~l~~L~~~l~~~~-------------~~iIli~~~~-~~~~l~-~l-~~r~~~i~f~-~~~~~~~~~~L 218 (516)
T 1sxj_A 156 EVDGMSGGDRGGVGQLAQFCRKTS-------------TPLILICNER-NLPKMR-PF-DRVCLDIQFR-RPDANSIKSRL 218 (516)
T ss_dssp SGGGCCTTSTTHHHHHHHHHHHCS-------------SCEEEEESCT-TSSTTG-GG-TTTSEEEECC-CCCHHHHHHHH
T ss_pred CCCccchhhHHHHHHHHHHHHhcC-------------CCEEEEEcCC-CCccch-hh-HhceEEEEeC-CCCHHHHHHHH
Confidence 9999976444 78888887643 1234444322 233443 34 4444555676 45666555544
Q ss_pred HHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCC
Q 004256 309 GIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGRE 388 (765)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~ 388 (765)
... +.. .++.+++++++.|++.+ +. +.|.++.+++.+.. +..
T Consensus 219 ~~i-------------------------~~~----~~~~i~~~~l~~la~~s---~G-diR~~i~~L~~~~~-----~~~ 260 (516)
T 1sxj_A 219 MTI-------------------------AIR----EKFKLDPNVIDRLIQTT---RG-DIRQVINLLSTIST-----TTK 260 (516)
T ss_dssp HHH-------------------------HHH----HTCCCCTTHHHHHHHHT---TT-CHHHHHHHHTHHHH-----HSS
T ss_pred HHH-------------------------HHH----cCCCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHh-----cCC
Confidence 311 111 13567888888887664 22 46888888765431 456
Q ss_pred CCCHHHHHHHHHHhc
Q 004256 389 KVNVDDLKKAVELVI 403 (765)
Q Consensus 389 ~Vt~edv~~A~~lvl 403 (765)
.|+.+++.+++....
T Consensus 261 ~It~~~v~~~~~~~~ 275 (516)
T 1sxj_A 261 TINHENINEISKAWE 275 (516)
T ss_dssp CCCTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHhhc
Confidence 799999988877543
No 101
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.22 E-value=1.4e-11 Score=129.58 Aligned_cols=156 Identities=19% Similarity=0.272 Sum_probs=93.3
Q ss_pred CCCCCCceeechHHHHHHHHhhh------------c-CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALLLGAI------------D-REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~~------------~-~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
....|++|.|.+.+++.|....+ + ....+++|+||+|||||+++++|+..+..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-------------- 70 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-------------- 70 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC--------------
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC--------------
Confidence 34578999999999888732111 1 12345999999999999999999998642
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEecccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi 233 (765)
+++.+..........|.. ++.+ .-++..+ ...++|+|||
T Consensus 71 ----------------------------~~i~i~g~~l~~~~~~~~--~~~i--------~~vf~~a~~~~p~i~~~Dei 112 (274)
T 2x8a_A 71 ----------------------------NFISVKGPELLNMYVGES--ERAV--------RQVFQRAKNSAPCVIFFDEV 112 (274)
T ss_dssp ----------------------------EEEEEETTTTCSSTTHHH--HHHH--------HHHHHHHHHTCSEEEEEETC
T ss_pred ----------------------------CEEEEEcHHHHhhhhhHH--HHHH--------HHHHHHHHhcCCCeEeeehh
Confidence 233322211111111110 0000 0011111 2358899999
Q ss_pred ccCC-----------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCC
Q 004256 234 NLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMT 300 (765)
Q Consensus 234 ~~L~-----------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~ 300 (765)
+.+. ..+.+.++..|+.+.- ...+++++++| .+..++++|+. ||+..+.+.+ |+
T Consensus 113 d~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~-----------~~~~i~ia~tn-~p~~LD~al~r~gRfd~~i~~~~-P~ 179 (274)
T 2x8a_A 113 DALCPRRSDRETGASVRVVNQLLTEMDGLEA-----------RQQVFIMAATN-RPDIIDPAILRPGRLDKTLFVGL-PP 179 (274)
T ss_dssp TTTCC---------CTTHHHHHHHHHHTCCS-----------TTCEEEEEEES-CGGGSCHHHHSTTSSCEEEECCS-CC
T ss_pred hhhhcccCCCcchHHHHHHHHHHHhhhcccc-----------cCCEEEEeecC-ChhhCCHhhcCcccCCeEEEeCC-cC
Confidence 8753 2356777888876541 12367788888 66678999997 9999988885 57
Q ss_pred HhhHHHHHHH
Q 004256 301 FEDRVAAVGI 310 (765)
Q Consensus 301 ~e~r~dI~~l 310 (765)
.+.|.+|+..
T Consensus 180 ~~~r~~il~~ 189 (274)
T 2x8a_A 180 PADRLAILKT 189 (274)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888763
No 102
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=5.9e-11 Score=126.81 Aligned_cols=213 Identities=18% Similarity=0.156 Sum_probs=131.6
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (765)
.++..|++++|++..+..|.-........++||+||+|||||++|+.+++.+....
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~------------------------ 70 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS------------------------ 70 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG------------------------
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc------------------------
Confidence 34566889999999999885443333445699999999999999999998752100
Q ss_pred ccccccCcccccccCCCeEeCCCCCc--ccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHH
Q 004256 169 AEYDTAGNLKTQIARSPFVQIPLGVT--EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (765)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~l~~~~~--e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~ 246 (765)
...+++.+.+... .+.+...+ ..+... . ..+......+++|||++.++...++.|+.
T Consensus 71 -------------~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~----~-~~~~~~~~~viiiDe~~~l~~~~~~~L~~ 129 (323)
T 1sxj_B 71 -------------YADGVLELNASDDRGIDVVRNQI---KHFAQK----K-LHLPPGKHKIVILDEADSMTAGAQQALRR 129 (323)
T ss_dssp -------------HHHHEEEECTTSCCSHHHHHTHH---HHHHHB----C-CCCCTTCCEEEEEESGGGSCHHHHHTTHH
T ss_pred -------------ccCCEEEecCccccChHHHHHHH---HHHHhc----c-ccCCCCCceEEEEECcccCCHHHHHHHHH
Confidence 0112222222210 00000000 000000 0 00111235699999999999999999999
Q ss_pred HHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhcccc
Q 004256 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (765)
Q Consensus 247 ~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~ 326 (765)
.+++.. .++++|.++|. ...+.+.+.+|+.. +.+. |++.++..+++...
T Consensus 130 ~le~~~-------------~~~~~il~~~~-~~~l~~~l~sr~~~-i~~~-~~~~~~~~~~l~~~--------------- 178 (323)
T 1sxj_B 130 TMELYS-------------NSTRFAFACNQ-SNKIIEPLQSQCAI-LRYS-KLSDEDVLKRLLQI--------------- 178 (323)
T ss_dssp HHHHTT-------------TTEEEEEEESC-GGGSCHHHHTTSEE-EECC-CCCHHHHHHHHHHH---------------
T ss_pred HHhccC-------------CCceEEEEeCC-hhhchhHHHhhceE-Eeec-CCCHHHHHHHHHHH---------------
Confidence 998742 34677778774 45677899999874 4565 45555544443311
Q ss_pred ccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 327 ~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
+.. .++.+++++++.+++.+ +. +.|..+.+++.+... ...|+.++|.+++.
T Consensus 179 ----------~~~----~~~~~~~~~~~~l~~~~---~G-~~r~a~~~l~~~~~~-----~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 179 ----------IKL----EDVKYTNDGLEAIIFTA---EG-DMRQAINNLQSTVAG-----HGLVNADNVFKIVD 229 (323)
T ss_dssp ----------HHH----HTCCBCHHHHHHHHHHH---TT-CHHHHHHHHHHHHHH-----HSSBCHHHHHHHHT
T ss_pred ----------HHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHhc-----CCCcCHHHHHHHHC
Confidence 111 14568889998888776 22 468888877665421 14799999987763
No 103
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.21 E-value=3.9e-12 Score=135.12 Aligned_cols=138 Identities=17% Similarity=0.168 Sum_probs=83.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCcc
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e 195 (765)
..++||+||||||||++|++|++.+. .+|+.++++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~------------------------------------------~~~i~v~~~~l~ 73 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG------------------------------------------INPIMMSAGELE 73 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT------------------------------------------CCCEEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC------------------------------------------CCEEEEeHHHhh
Confidence 35799999999999999999998763 355555544433
Q ss_pred cceeeecccccccccCCCcccCCceeec-------cCCeEeccccccCCH-------------HHHHHHHHHHHcCceEE
Q 004256 196 DRLIGSVDVEESVKTGTTVFQPGLLAEA-------HRGVLYIDEINLLDE-------------GISNLLLNVLTEGVNIV 255 (765)
Q Consensus 196 ~~L~G~~d~e~~~~~g~~~~~~Gll~~A-------~~GiL~lDEi~~L~~-------------~~q~~Ll~~l~~~~~~v 255 (765)
+.++|.. +. .....+..| ..+|||||||+.+.. .+++.|+++|+......
T Consensus 74 ~~~~g~~--~~--------~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 143 (293)
T 3t15_A 74 SGNAGEP--AK--------LIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ 143 (293)
T ss_dssp CC---HH--HH--------HHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC---
T ss_pred hccCchh--HH--------HHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccc
Confidence 4444421 00 001122223 568999999987754 46799999998554211
Q ss_pred EeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCCHhhHHHHHH
Q 004256 256 EREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFEDRVAAVG 309 (765)
Q Consensus 256 ~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~~e~r~dI~~ 309 (765)
...........++.+|+||| ....++++|+. ||...+. .| +.++|.+|+.
T Consensus 144 ~~~~~~~~~~~~v~vI~ttN-~~~~ld~al~R~~R~d~~i~--~P-~~~~r~~Il~ 195 (293)
T 3t15_A 144 LPGMYNKQENARVPIIVTGN-DFSTLYAPLIRDGRMEKFYW--AP-TREDRIGVCT 195 (293)
T ss_dssp --------CCCCCCEEEECS-SCCC--CHHHHHHHEEEEEE--CC-CHHHHHHHHH
T ss_pred cccccccccCCCcEEEEecC-CcccCCHHHhCCCCCceeEe--Cc-CHHHHHHHHH
Confidence 11111122335789999999 55677888884 8887653 34 8888888875
No 104
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=99.20 E-value=2.8e-11 Score=145.22 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=86.4
Q ss_pred ccCCceEEEEEeCCCCCCch------hHHHHHHHHHHHHHhhc-CCCCeEEEEEeeCCCcEE------------------
Q 004256 558 RKAGALVIFVVDASGSMALN------RMQNAKGAALKLLAESY-TCRDQVSIIPFRGDSAEV------------------ 612 (765)
Q Consensus 558 ~~~~~~vv~vvD~SgSM~~~------rl~~ak~a~~~ll~~~~-~~~d~v~lv~F~~~~a~~------------------ 612 (765)
.+.+.+||||||.||||.+. ||..+|.++..++.... .++|+||||.|++. +..
T Consensus 221 ~~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~-a~~~~~~~v~~~~~~~~g~~~ 299 (893)
T 2ww8_A 221 KSVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYAST-IFDGTEFTVEKGVADKNGKRL 299 (893)
T ss_dssp TTCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSS-BCBSCEEEEECCEECTTCCEE
T ss_pred cCCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCc-ccccccccccccccccccccc
Confidence 45789999999999999863 68889999999986433 36899999999985 311
Q ss_pred ---------------------EcCCCccH---HHHHHHhhc----------CCCCCCChhHHHHHHHHHHHHhhhccCCC
Q 004256 613 ---------------------LLPPSRSI---AMARKRLER----------LPCGGGSPLAHGLSMAVRVGLNAEKSGDV 658 (765)
Q Consensus 613 ---------------------~~p~t~~~---~~~~~~l~~----------l~~gG~T~l~~aL~~A~~~l~~~~~~~~~ 658 (765)
.+|+|.+. ..++..|.. +.++|||+++.||..|.++|....+. .
T Consensus 300 n~~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~--~ 377 (893)
T 2ww8_A 300 NDSLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQ--N 377 (893)
T ss_dssp CCCTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCS--S
T ss_pred ccccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhccc--C
Confidence 23556555 444566664 33479999999999999998643221 2
Q ss_pred CceEEEEEeCCCCCCCC
Q 004256 659 GRIMIVAITDGRANISL 675 (765)
Q Consensus 659 ~~~~vvliTDG~~n~~~ 675 (765)
.+++|||||||.+|.+.
T Consensus 378 ~~kvIILLTDG~pt~~~ 394 (893)
T 2ww8_A 378 SQKVIFHITDGVPTMSY 394 (893)
T ss_dssp SEEEEEEEESSCCSEEC
T ss_pred CCeEEEEEcCCCCCccc
Confidence 36689999999999754
No 105
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.18 E-value=1.3e-11 Score=149.70 Aligned_cols=212 Identities=18% Similarity=0.157 Sum_probs=122.5
Q ss_pred CCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccccc
Q 004256 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (765)
Q Consensus 91 ~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (765)
+..|+.++|++..++.+.-........++||+||||||||++|+.++..+..- .++
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~----~~p-------------------- 221 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKG----DVP-------------------- 221 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHT----CSC--------------------
T ss_pred cCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcC----CCc--------------------
Confidence 34578899999988888544444556789999999999999999999875310 000
Q ss_pred ccccCcccccccCCCeEeCCCCCcc--cceeeecccccccccCCCcccCCceeec----cCCeEeccccccCC-------
Q 004256 171 YDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLLD------- 237 (765)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~l~~~~~e--~~L~G~~d~e~~~~~g~~~~~~Gll~~A----~~GiL~lDEi~~L~------- 237 (765)
......+++.++++... ....|.. +. ....++..+ ...||||||++.|.
T Consensus 222 --------~~l~~~~~~~l~~~~l~~g~~~~g~~--~~--------~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g 283 (854)
T 1qvr_A 222 --------EGLKGKRIVSLQMGSLLAGAKYRGEF--EE--------RLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG 283 (854)
T ss_dssp --------TTSTTCEEEEECC-----------CH--HH--------HHHHHHHHHHTTCSSEEEEECCC-----------
T ss_pred --------hhhcCCeEEEeehHHhhccCccchHH--HH--------HHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc
Confidence 00024456666554321 1111110 00 001122211 23499999999997
Q ss_pred -HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC---CcchHHHhhhhcceeecCCCCHhhHHHHHHHHHH
Q 004256 238 -EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (765)
Q Consensus 238 -~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg---~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~ 313 (765)
.++++.|..+++.+. +++|+++|+.+. .+.++|.+||.. +.+. +|+.+.+.+|+...
T Consensus 284 ~~~~~~~L~~~l~~~~---------------i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~-~p~~~e~~~iL~~~-- 344 (854)
T 1qvr_A 284 AVDAGNMLKPALARGE---------------LRLIGATTLDEYREIEKDPALERRFQP-VYVD-EPTVEETISILRGL-- 344 (854)
T ss_dssp --------HHHHHTTC---------------CCEEEEECHHHHHHHTTCTTTCSCCCC-EEEC-CCCHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHhCCC---------------eEEEEecCchHHhhhccCHHHHhCCce-EEeC-CCCHHHHHHHHHhh--
Confidence 566778888887764 568888886543 467899999997 5787 45677666666422
Q ss_pred HHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCC--CCCChHHHHHHHHHHHHHHcC
Q 004256 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC--QGHRAELYAARVAKCLAALEG 386 (765)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~--~s~Ra~i~llr~A~a~A~l~g 386 (765)
.... ..-.++.++++++..++.++...-. .-++..+.++..|.+.+.+..
T Consensus 345 -~~~~----------------------~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~ 396 (854)
T 1qvr_A 345 -KEKY----------------------EVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMAL 396 (854)
T ss_dssp -HHHH----------------------HHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTT
T ss_pred -hhhh----------------------hhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhc
Confidence 1111 1123577888888888888766422 123556777777777776653
No 106
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.15 E-value=5e-11 Score=129.17 Aligned_cols=213 Identities=14% Similarity=0.124 Sum_probs=128.5
Q ss_pred CCCCCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCccccccccc
Q 004256 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (765)
Q Consensus 89 ~~~~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (765)
.++..|++++|++.++..|....-.....++||+||+|||||++|++++..+.... +
T Consensus 19 ~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~----------------~------- 75 (340)
T 1sxj_C 19 YRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN----------------Y------- 75 (340)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS----------------H-------
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC----------------c-------
Confidence 45667889999999999885444333345699999999999999999998753100 0
Q ss_pred ccccccCcccccccCCCeEeCCCCCc--cc---ceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHH
Q 004256 169 AEYDTAGNLKTQIARSPFVQIPLGVT--ED---RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (765)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~l~~~~~--e~---~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~ 243 (765)
...+..++.... .+ ++++.+ ..+.. .+ .....+++|||++.|+...++.
T Consensus 76 --------------~~~~~~~~~~~~~~~~~ir~~i~~~-----~~~~~------~~-~~~~~viiiDe~~~l~~~~~~~ 129 (340)
T 1sxj_C 76 --------------SNMVLELNASDDRGIDVVRNQIKDF-----ASTRQ------IF-SKGFKLIILDEADAMTNAAQNA 129 (340)
T ss_dssp --------------HHHEEEECTTSCCSHHHHHTHHHHH-----HHBCC------SS-SCSCEEEEETTGGGSCHHHHHH
T ss_pred --------------cceEEEEcCcccccHHHHHHHHHHH-----Hhhcc------cC-CCCceEEEEeCCCCCCHHHHHH
Confidence 001111211100 00 001100 00000 01 1234689999999999999999
Q ss_pred HHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHHHHhhHHHhc
Q 004256 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (765)
Q Consensus 244 Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~~~~~~~~~~ 323 (765)
|+..+++.. ...++|.++|. ...+.+.+..|+..+ .+. |+..+...+++. ..
T Consensus 130 L~~~le~~~-------------~~~~~il~~n~-~~~i~~~i~sR~~~~-~~~-~l~~~~~~~~l~---~~--------- 181 (340)
T 1sxj_C 130 LRRVIERYT-------------KNTRFCVLANY-AHKLTPALLSQCTRF-RFQ-PLPQEAIERRIA---NV--------- 181 (340)
T ss_dssp HHHHHHHTT-------------TTEEEEEEESC-GGGSCHHHHTTSEEE-ECC-CCCHHHHHHHHH---HH---------
T ss_pred HHHHHhcCC-------------CCeEEEEEecC-ccccchhHHhhceeE-ecc-CCCHHHHHHHHH---HH---------
Confidence 999998743 24566777773 456778999998643 554 444443333222 11
Q ss_pred cccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004256 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (765)
Q Consensus 324 ~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~ 399 (765)
+.. .++.+++++++.+++++ +. +.|..+.+++.+...+.-.+...|+.+++..++
T Consensus 182 -------------~~~----~~~~i~~~~~~~i~~~s---~G-~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 182 -------------LVH----EKLKLSPNAEKALIELS---NG-DMRRVLNVLQSCKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp -------------HHT----TTCCBCHHHHHHHHHHH---TT-CHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHT
T ss_pred -------------HHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHhcCCcccccccHHHHHHHh
Confidence 111 24678899888888765 22 467777777654322211223479999987764
No 107
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.13 E-value=6.9e-12 Score=122.41 Aligned_cols=152 Identities=20% Similarity=0.227 Sum_probs=91.3
Q ss_pred CCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccc
Q 004256 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (765)
..|..++|++..++.+.-........+|||+||+|||||++|+.+++.+.... + |.
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~----~-----~~--------------- 74 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGD----V-----PD--------------- 74 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTC----S-----CT---------------
T ss_pred cccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcC----C-----cc---------------
Confidence 45788999999888885444445567899999999999999999998764200 0 00
Q ss_pred cccCcccccccCCCeEeCCCCCcc--cceeeecccccccccCCCcccCCceeecc-CCeEeccccccCC---------HH
Q 004256 172 DTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEAH-RGVLYIDEINLLD---------EG 239 (765)
Q Consensus 172 ~~~~~~~~~~~~~~~v~l~~~~~e--~~L~G~~d~e~~~~~g~~~~~~Gll~~A~-~GiL~lDEi~~L~---------~~ 239 (765)
.....+++.+.+.... ....|... ..+ ......+...+ +.+|||||++.+. ..
T Consensus 75 --------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~ 139 (187)
T 2p65_A 75 --------SLKGRKLVSLDLSSLIAGAKYRGDFE--ERL-----KSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALD 139 (187)
T ss_dssp --------TTTTCEEEEECHHHHHHHCCSHHHHH--HHH-----HHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCC
T ss_pred --------hhcCCeEEEEeHHHhhcCCCchhHHH--HHH-----HHHHHHHHhcCCceEEEEeCHHHhcccccccccchH
Confidence 0012233332211100 00001000 000 00001111222 3499999999997 56
Q ss_pred HHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC----CCcchHHHhhhhcceeecCC
Q 004256 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLP 298 (765)
Q Consensus 240 ~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e----g~l~~~L~dRf~~~v~i~~p 298 (765)
+++.|...++.+. +.+|+++|..+ -.+.++|++||.. +.+..|
T Consensus 140 ~~~~l~~~~~~~~---------------~~ii~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~p 186 (187)
T 2p65_A 140 AGNILKPMLARGE---------------LRCIGATTVSEYRQFIEKDKALERRFQQ-ILVEQP 186 (187)
T ss_dssp THHHHHHHHHTTC---------------SCEEEEECHHHHHHHTTTCHHHHHHEEE-EECCSC
T ss_pred HHHHHHHHHhcCC---------------eeEEEecCHHHHHHHHhccHHHHHhcCc-ccCCCC
Confidence 7788888877643 67889888644 3578999999996 467644
No 108
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.11 E-value=6.4e-12 Score=122.91 Aligned_cols=160 Identities=22% Similarity=0.240 Sum_probs=93.3
Q ss_pred CCCCceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccc
Q 004256 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (765)
..|+.++|++..++.+.-........+|||+|++|||||++|+.+++.+..... +
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~------------~------------- 73 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEV------------P------------- 73 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCS------------C-------------
T ss_pred ccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCC------------c-------------
Confidence 457889999998888854444445678999999999999999999987531000 0
Q ss_pred cccCcccccccCCCeEeCCCCCcc--cceeeecccccccccCCCcccCCceeecc-CCeEeccccccCC--------HHH
Q 004256 172 DTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEAH-RGVLYIDEINLLD--------EGI 240 (765)
Q Consensus 172 ~~~~~~~~~~~~~~~v~l~~~~~e--~~L~G~~d~e~~~~~g~~~~~~Gll~~A~-~GiL~lDEi~~L~--------~~~ 240 (765)
......+++.+.+.... ....|.. ...+. .....+...+ +.+|||||++.+. ..+
T Consensus 74 -------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~ 139 (195)
T 1jbk_A 74 -------EGLKGRRVLALDMGALVAGAKYRGEF--EERLK-----GVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDA 139 (195)
T ss_dssp -------GGGTTCEEEEECHHHHHTTTCSHHHH--HHHHH-----HHHHHHHHSTTTEEEEEETGGGGTT------CCCC
T ss_pred -------hhhcCCcEEEeeHHHHhccCCccccH--HHHHH-----HHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHH
Confidence 00012233333221100 0111100 00000 0000011223 3389999999995 344
Q ss_pred HHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC----CCcchHHHhhhhcceeecCCCCHhhHHHH
Q 004256 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAA 307 (765)
Q Consensus 241 q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e----g~l~~~L~dRf~~~v~i~~p~~~e~r~dI 307 (765)
++.|...++.+. +.+|+++|..+ -.++++|++||.. +.+. +++.+++.+|
T Consensus 140 ~~~l~~~~~~~~---------------~~~i~~~~~~~~~~~~~~~~~l~~r~~~-i~~~-~p~~~~~~~i 193 (195)
T 1jbk_A 140 GNMLKPALARGE---------------LHCVGATTLDEYRQYIEKDAALERRFQK-VFVA-EPSVEDTIAI 193 (195)
T ss_dssp HHHHHHHHHTTS---------------CCEEEEECHHHHHHHTTTCHHHHTTEEE-EECC-CCCHHHHHTT
T ss_pred HHHHHHhhccCC---------------eEEEEeCCHHHHHHHHhcCHHHHHHhce-eecC-CCCHHHHHHH
Confidence 777777776543 56788887543 2568999999985 5677 4566655544
No 109
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=7.3e-10 Score=120.26 Aligned_cols=222 Identities=14% Similarity=0.125 Sum_probs=120.9
Q ss_pred cCCCCCCCceeechHHHHHHHHhh-hcCCCCcEEEECCCCcHHHHHHHHHHh-hCCCcchhcccc-cCCCCCCCCccccc
Q 004256 88 GRQFFPLAAVVGQDAIKTALLLGA-IDREIGGIAISGRRGTAKTVMARGLHA-ILPPIEVVVGSI-ANADPTCPDEWEDG 164 (765)
Q Consensus 88 ~~~~~~f~~ivG~~~~~~aL~l~~-~~~~~~~VLi~Ge~GTGKt~lAr~l~~-~l~~~~~~~~~~-~~~~~~~~~~~~~~ 164 (765)
++++..|++++|++.++..|.-.. ......+++|+||+||||||+++.++. +...-. ++. ++..+. ..+|..
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~---g~i~~~~~~~--~~~~~~ 81 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGV---YRLKIDVRQF--VTASNR 81 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTC---CC----------------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCC---CeEEecceee--cccccc
Confidence 356777899999999999885444 333334599999999999999999999 443210 000 000000 000000
Q ss_pred ccccccccccCcccccccCCCeEeCCCCCcccceeeecc---cccccc--cCCCccc-----CCceeeccCCeEeccccc
Q 004256 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVD---VEESVK--TGTTVFQ-----PGLLAEAHRGVLYIDEIN 234 (765)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d---~e~~~~--~g~~~~~-----~Gll~~A~~GiL~lDEi~ 234 (765)
+.. +. .....+++.+.... .|..+ +...+. ....... +|+ ..+..+++|||++
T Consensus 82 ~~~-~~---------~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l--~~~~~vlilDE~~ 144 (354)
T 1sxj_E 82 KLE-LN---------VVSSPYHLEITPSD-----MGNNDRIVIQELLKEVAQMEQVDFQDSKDGL--AHRYKCVIINEAN 144 (354)
T ss_dssp -----C---------CEECSSEEEECCC---------CCHHHHHHHHHHHTTTTC--------------CCEEEEEECTT
T ss_pred cce-ee---------eecccceEEecHhh-----cCCcchHHHHHHHHHHHHhcccccccccccc--CCCCeEEEEeCcc
Confidence 000 00 00112233222110 00000 000000 0000000 110 2244599999999
Q ss_pred cCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHHHHHHHHH
Q 004256 235 LLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (765)
Q Consensus 235 ~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l~~~~ 314 (765)
.|+...++.|+..|++.. .+..+|.++| ....+.+.+.+|+ ..+.+. |++.+...+++...
T Consensus 145 ~L~~~~~~~L~~~le~~~-------------~~~~~Il~t~-~~~~l~~~l~sR~-~~~~~~-~~~~~~~~~~l~~~--- 205 (354)
T 1sxj_E 145 SLTKDAQAALRRTMEKYS-------------KNIRLIMVCD-SMSPIIAPIKSQC-LLIRCP-APSDSEISTILSDV--- 205 (354)
T ss_dssp SSCHHHHHHHHHHHHHST-------------TTEEEEEEES-CSCSSCHHHHTTS-EEEECC-CCCHHHHHHHHHHH---
T ss_pred ccCHHHHHHHHHHHHhhc-------------CCCEEEEEeC-CHHHHHHHHHhhc-eEEecC-CcCHHHHHHHHHHH---
Confidence 999999999999998632 2456777777 4456788999999 444666 55655544443311
Q ss_pred HHhhHHHhccccccCcHHHHHHHHHhcccCCccCC-HHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Q 004256 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIG-REQLKYLVMEALRGGCQGHRAELYAARVAKC 380 (765)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~-~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a 380 (765)
+.. .++.++ +++++.++..+ +. +.|..+.++..+..
T Consensus 206 ----------------------~~~----~~~~~~~~~~l~~i~~~~---~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 206 ----------------------VTN----ERIQLETKDILKRIAQAS---NG-NLRVSLLMLESMAL 242 (354)
T ss_dssp ----------------------HHH----HTCEECCSHHHHHHHHHH---TT-CHHHHHHHHTHHHH
T ss_pred ----------------------HHH----cCCCCCcHHHHHHHHHHc---CC-CHHHHHHHHHHHHH
Confidence 111 146777 88888888765 22 57888888876543
No 110
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.07 E-value=7.7e-11 Score=125.73 Aligned_cols=161 Identities=6% Similarity=-0.030 Sum_probs=96.3
Q ss_pred CeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC---CcchHHHhhhhc-ceeecCCCCH
Q 004256 226 GVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIAI-NLSADLPMTF 301 (765)
Q Consensus 226 GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg---~l~~~L~dRf~~-~v~i~~p~~~ 301 (765)
.|+|||||+.|. .|+.|+.+++-.. . ...++.+|+.+|.-+- .+.+.+.+||+. .+.+. |++.
T Consensus 134 ~ii~lDE~d~l~--~q~~L~~l~~~~~--~--------~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~-pYt~ 200 (318)
T 3te6_A 134 TLILIQNPENLL--SEKILQYFEKWIS--S--------KNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLN-KVDK 200 (318)
T ss_dssp EEEEEECCSSSC--CTHHHHHHHHHHH--C--------SSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECC-CCCH
T ss_pred eEEEEecHHHhh--cchHHHHHHhccc--c--------cCCcEEEEEEecCcccchhhcchhhhccCCceEEEeC-CCCH
Confidence 489999999997 5666666664111 0 0135788999886432 355677899975 34444 8899
Q ss_pred hhHHHHHHHHHHHHHhhHHHhccccccCcHHH----HHHHHHhcccCC-----ccCCHHHHHHHHHHHHhCCCCCCChHH
Q 004256 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAK----TQIILAREYLKD-----VAIGREQLKYLVMEALRGGCQGHRAEL 372 (765)
Q Consensus 302 e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~----~~il~a~~~~~n-----v~i~~~~l~~l~~~a~~~g~~s~Ra~i 372 (765)
++..+|+..+....... ++ ++.......+ .+-......+++ +.++++++++++..+...++ ..|.++
T Consensus 201 ~el~~Il~~Rl~~~~~~--~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al 276 (318)
T 3te6_A 201 NELQQMIITRLKSLLKP--FH-VKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAF 276 (318)
T ss_dssp HHHHHHHHHHHHHHCCC--EE-EEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHH
T ss_pred HHHHHHHHHHHHhhhcc--cc-ccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHH
Confidence 99888887654332100 00 0000000000 000000012232 47999999999987666555 589999
Q ss_pred HHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHhc
Q 004256 373 YAARVAKCLAALE---------GREKVNVDDLKKAVELVI 403 (765)
Q Consensus 373 ~llr~A~a~A~l~---------gr~~Vt~edv~~A~~lvl 403 (765)
.+++.|..+|.-+ |...|+.+++.+++.-++
T Consensus 277 ~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~~ 316 (318)
T 3te6_A 277 KICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSEAI 316 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHHHh
Confidence 9999999999653 334677777777665543
No 111
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=98.97 E-value=4e-09 Score=122.76 Aligned_cols=142 Identities=14% Similarity=0.122 Sum_probs=101.4
Q ss_pred ceEEEEEeCCCCCCc-------hhHHHHHHHHHHHHHhh--cCCCCeEEEEEeeCCCc---------EEEcCCCc-cHHH
Q 004256 562 ALVIFVVDASGSMAL-------NRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSA---------EVLLPPSR-SIAM 622 (765)
Q Consensus 562 ~~vv~vvD~SgSM~~-------~rl~~ak~a~~~ll~~~--~~~~d~v~lv~F~~~~a---------~~~~p~t~-~~~~ 622 (765)
-.++|+||+|+||.. +++..++..+..++... ..+.|+||||.|++... .++.|++. +...
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~~~~~~~ 115 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKR 115 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCHHH
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCCCCCHHH
Confidence 449999999999952 59999999999998742 46889999999998831 34455442 3333
Q ss_pred HHHHhhc------------CCCCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCC
Q 004256 623 ARKRLER------------LPCGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPR 690 (765)
Q Consensus 623 ~~~~l~~------------l~~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~ 690 (765)
++...+- +..+.+|++..||..|..++..... ......|||||||..+.+..
T Consensus 116 ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~--k~~~k~IiL~TDg~~p~~~~-------------- 179 (609)
T 1jey_A 116 ILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQF--KMSHKRIMLFTNEDNPHGND-------------- 179 (609)
T ss_dssp HHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSS--CEEEEEEEEEESCSCTTTTC--------------
T ss_pred HHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhch--hhcCCEEEEEcCCCCCCCCc--------------
Confidence 3332221 1225789999999999999876421 11134799999999775421
Q ss_pred CCchhHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 004256 691 PSSQELKDEILEVAGKIYKAGMSLLVIDTENK 722 (765)
Q Consensus 691 ~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~ 722 (765)
......+..+|+.+...||.+++|+++..
T Consensus 180 ---~~~~~~~~~~a~~l~~~gI~i~~igig~~ 208 (609)
T 1jey_A 180 ---SAKASRARTKAGDLRDTGIFLDLMHLKKP 208 (609)
T ss_dssp ---HHHHHHHHHHHHHHHHHTEEEEEEEBCCT
T ss_pred ---hHHHHHHHHHHHHHHhcCcEEEEEecCCC
Confidence 11234678899999999999999998753
No 112
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.95 E-value=3.3e-11 Score=144.87 Aligned_cols=155 Identities=18% Similarity=0.221 Sum_probs=99.6
Q ss_pred CCCCCCceeechHHHHHHHHhhhc-------------CCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALLLGAID-------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~l~~~~-------------~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
....|.+++|.+.+++.|.-.... ....++||+||||||||++|++|+..+.
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--------------- 536 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--------------- 536 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT---------------
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC---------------
Confidence 345688999999999988433221 2345699999999999999999999763
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeec---cCCeEecccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A---~~GiL~lDEi 233 (765)
.+|+.+.+....+.++|.. ++ ....++..+ ..++||||||
T Consensus 537 ---------------------------~~~i~v~~~~l~~~~~g~~--~~--------~i~~~f~~a~~~~p~vl~iDEi 579 (806)
T 1ypw_A 537 ---------------------------ANFISIKGPELLTMWFGES--EA--------NVREIFDKARQAAPCVLFFDEL 579 (806)
T ss_dssp ---------------------------CCCCCCCCSSSTTCCTTTS--SH--------HHHHHHHHHHHHCSBCCCCSSH
T ss_pred ---------------------------CCEEEEechHhhhhhcCcc--HH--------HHHHHHHHHHhcCCeEEEEECh
Confidence 2344444433333333321 00 001122222 2369999999
Q ss_pred ccCC--------------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecC
Q 004256 234 NLLD--------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (765)
Q Consensus 234 ~~L~--------------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~ 297 (765)
+.+. ..+++.||..|+... ...+++||+||| ....++++|++ ||...+.+..
T Consensus 580 d~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~vI~tTN-~~~~ld~allrpgRf~~~i~~~~ 647 (806)
T 1ypw_A 580 DSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVFIIGATN-RPDIIDPAILRPGRLDQLIYIPL 647 (806)
T ss_dssp HHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----------------CCBCCCCCB-SCGGGSCTTSSGGGTTSCCCCCC
T ss_pred hhhhhhccCCCCCcchhHHHHHHHHHHHHhccc-----------ccCCeEEEEecC-CcccCCHHHhCccccCceeecCC
Confidence 9862 345566666665322 123688999999 45568899998 9998887874
Q ss_pred CCCHhhHHHHHH
Q 004256 298 PMTFEDRVAAVG 309 (765)
Q Consensus 298 p~~~e~r~dI~~ 309 (765)
|+.+.+.+|+.
T Consensus 648 -p~~~~r~~Il~ 658 (806)
T 1ypw_A 648 -PDEKSRVAILK 658 (806)
T ss_dssp -CCCSHHHHHTT
T ss_pred -CCHHHHHHHHH
Confidence 57777777764
No 113
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.89 E-value=7.6e-10 Score=133.02 Aligned_cols=155 Identities=18% Similarity=0.197 Sum_probs=97.5
Q ss_pred CCCCCCceeechHHHHHHH--Hhh-----------hcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCC
Q 004256 90 QFFPLAAVVGQDAIKTALL--LGA-----------IDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (765)
Q Consensus 90 ~~~~f~~ivG~~~~~~aL~--l~~-----------~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~ 156 (765)
....|++|+|++..++.|. +.. ......+|||+||+|||||++||+|+..++.
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~-------------- 264 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------------- 264 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC--------------
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--------------
Confidence 3567899999999888772 111 1133467999999999999999999987642
Q ss_pred CCCcccccccccccccccCcccccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceee---ccCCeEecccc
Q 004256 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDEI 233 (765)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~---A~~GiL~lDEi 233 (765)
+|+.+.+......+.|.. +. ....++.. ...+++|||||
T Consensus 265 ----------------------------~~i~v~~~~l~~~~~g~~--~~--------~l~~vf~~a~~~~p~il~iDEi 306 (806)
T 1ypw_A 265 ----------------------------FFFLINGPEIMSKLAGES--ES--------NLRKAFEEAEKNAPAIIFIDEL 306 (806)
T ss_dssp ----------------------------EEEEEEHHHHSSSSTTHH--HH--------HHHHHHHHHHHHCSEEEEEESG
T ss_pred ----------------------------cEEEEEchHhhhhhhhhH--HH--------HHHHHHHHHHhcCCcEEEeccH
Confidence 333333221111111110 00 00011211 23469999999
Q ss_pred ccCC-----------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHh--hhhcceeecCCCC
Q 004256 234 NLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMT 300 (765)
Q Consensus 234 ~~L~-----------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~d--Rf~~~v~i~~p~~ 300 (765)
+.+. ..++..|+..++... ...++++|+++|+ ...+++.|.. ||...+.+.. ++
T Consensus 307 d~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-----------~~~~v~vI~atn~-~~~ld~al~r~gRf~~~i~i~~-p~ 373 (806)
T 1ypw_A 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATNR-PNSIDPALRRFGRFDREVDIGI-PD 373 (806)
T ss_dssp GGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-----------TTSCCEEEEECSC-TTTSCTTTTSTTSSCEEECCCC-CC
T ss_pred HHhhhccccccchHHHHHHHHHHHHhhhhc-----------ccccEEEecccCC-chhcCHHHhcccccccccccCC-CC
Confidence 8764 346788888887432 1246889999995 4456777766 8887777775 46
Q ss_pred HhhHHHHHH
Q 004256 301 FEDRVAAVG 309 (765)
Q Consensus 301 ~e~r~dI~~ 309 (765)
.+.|.+|+.
T Consensus 374 ~~~r~~il~ 382 (806)
T 1ypw_A 374 ATGRLEILQ 382 (806)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777664
No 114
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=98.81 E-value=1.1e-07 Score=94.81 Aligned_cols=195 Identities=10% Similarity=0.102 Sum_probs=119.9
Q ss_pred CceEEEEEeCCCCCCchhHHHHHHHHHHHHHhh--cCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCCh-
Q 004256 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSP- 637 (765)
Q Consensus 561 ~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~--~~~~d~v~lv~F~~~~a~~~~p~t~~~~~~~~~l~~l~~gG~T~- 637 (765)
+.+++||+|.|+||. +-++.+|..+..++... +...-|+|++.|.+..-...+++|.+.....+.|..+..+|+-+
T Consensus 3 pvDl~fl~D~S~SM~-~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~~~~~l~lT~d~~~F~~~v~~~~vsg~~D~ 81 (212)
T 2iue_A 3 SVDLYFLMGLSGSAQ-GHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQHILKLTADSSQFQRELRKQLVSGKLAT 81 (212)
T ss_dssp CEEEEEEEECCGGGT-TTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSCEEEEEEEESCHHHHHHHHHTCCCCCCSSS
T ss_pred ceEEEEEEeCCCcch-hHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCcceecCCcCCCHHHHHHHHhhccccCCCCC
Confidence 689999999999998 44666666666665432 45678999999988866678999999999999999998776533
Q ss_pred ---hHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCC-Cc--ccCCC----CCCC-CCchhHHHHHHHHHHH
Q 004256 638 ---LAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRST-DP--EATAS----DAPR-PSSQELKDEILEVAGK 706 (765)
Q Consensus 638 ---l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~-~~--~~~~~----~~~~-~~~~~~~~~~~~~a~~ 706 (765)
...||..|+--..+...+. .+.+|||+||+.+....++.. +. |-++. +... ++...-...+.++.+.
T Consensus 82 PE~g~dal~qa~~c~~~i~Wr~--a~rllvl~TDa~~H~~gDg~l~gi~~pnd~~chl~~g~y~~s~~~Dyps~~q~~~~ 159 (212)
T 2iue_A 82 PKGQLDAVVQVAICLGEIGWRN--GTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLASK 159 (212)
T ss_dssp SBCHHHHHHHHHHCHHHHTCCS--SEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSSBBGGGGSSCCCCHHHHHHH
T ss_pred CchHHHHHHHHHHhhhhcccCC--ccEEEEEECcCCccccCCccccccccCCccccccCCCeeccCcccCCCCHHHHHHH
Confidence 3345555442212222333 366899999998765432210 00 00000 0000 0000000134556666
Q ss_pred HHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHHHHHh
Q 004256 707 IYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDALSA 761 (765)
Q Consensus 707 ~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~~~~~ 761 (765)
+.+.+|.++..-+.. ....-++|++..++...-.=..+...|..++..+-.+
T Consensus 160 l~~~~i~~ifavt~~---~~~~Y~~l~~~i~~s~v~~L~~dSsni~~li~~~y~~ 211 (212)
T 2iue_A 160 LAENNIQPIFVVPSR---MVKTYEKLTTFIPKLTIGELSDDSSNVAQLIRNAYSK 211 (212)
T ss_dssp HHHHTCEEEEEEEHH---HHHHHHHHHHHSTTCEEEEESSCCHHHHHHHHHHHHT
T ss_pred HHhcCCcEEEEEccc---hhHHHHHHHHHcccceeeeecCCcHHHHHHHHHHHhh
Confidence 766787654443433 2456788888877766654455666788888776543
No 115
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.64 E-value=3.9e-08 Score=108.60 Aligned_cols=141 Identities=16% Similarity=0.103 Sum_probs=87.6
Q ss_pred CeEeccccccCC------HHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC--CCcc---hHHHhhhhccee
Q 004256 226 GVLYIDEINLLD------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVR---EHLLDRIAINLS 294 (765)
Q Consensus 226 GiL~lDEi~~L~------~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e--g~l~---~~L~dRf~~~v~ 294 (765)
-+|+|||++.+. .+.+..|+..+.... ..+ ...++.+|+++|..+ ..+. +.+..+|...+.
T Consensus 140 ~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~----~~~----~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 211 (412)
T 1w5s_A 140 LLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIP----SRD----GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLH 211 (412)
T ss_dssp EEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSC----CTT----SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEE
T ss_pred EEEEEeCHHHHhhccCcchHHHHHHHHHHHhcc----cCC----CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeee
Confidence 389999999985 367777777776421 000 013567887776221 1233 556677765544
Q ss_pred ecCCCCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCC---CCCCChH
Q 004256 295 ADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG---CQGHRAE 371 (765)
Q Consensus 295 i~~p~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g---~~s~Ra~ 371 (765)
+. |.+.++..+++.. ... .+ . ....+++++++.++..+.... . .+|..
T Consensus 212 l~-~l~~~e~~~ll~~---~~~---------------------~~--~-~~~~~~~~~~~~i~~~~~~~~~~~G-~p~~~ 262 (412)
T 1w5s_A 212 LP-AYKSRELYTILEQ---RAE---------------------LG--L-RDTVWEPRHLELISDVYGEDKGGDG-SARRA 262 (412)
T ss_dssp CC-CCCHHHHHHHHHH---HHH---------------------HH--B-CTTSCCHHHHHHHHHHHCGGGTSCC-CHHHH
T ss_pred eC-CCCHHHHHHHHHH---HHH---------------------hc--C-CCCCCChHHHHHHHHHHHHhccCCC-cHHHH
Confidence 44 4455544444321 100 00 1 123577888888888775322 2 47889
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhc
Q 004256 372 LYAARVAKCLAALEGREKVNVDDLKKAVELVI 403 (765)
Q Consensus 372 i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl 403 (765)
+.+++.+...|...+...|+.+++..++....
T Consensus 263 ~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 263 IVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 99999888888888888999999998886543
No 116
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.61 E-value=4.6e-08 Score=128.77 Aligned_cols=84 Identities=19% Similarity=0.129 Sum_probs=62.3
Q ss_pred CCeEeccccccCCH------HHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCC--C--CcchHHHhhhhccee
Q 004256 225 RGVLYIDEINLLDE------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--G--VVREHLLDRIAINLS 294 (765)
Q Consensus 225 ~GiL~lDEi~~L~~------~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~e--g--~l~~~L~dRf~~~v~ 294 (765)
..||||||||.... ..++.|.+.|+.|.+...+.+..... .++.+||||||.. | .+++.|++||.++ .
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~-~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi-~ 1414 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTI-ERIHIVGACNPPTDPGRIPMSERFTRHAAIL-Y 1414 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEE-ESEEEEEEECCTTSTTCCCCCHHHHTTEEEE-E
T ss_pred eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEe-cCEEEEEecCCCccCCCccCChhhhheeeEE-E
Confidence 34999999987543 37888889999877544444544444 6899999999974 3 6889999999664 7
Q ss_pred ecCCCCHhhHHHHHHHH
Q 004256 295 ADLPMTFEDRVAAVGIA 311 (765)
Q Consensus 295 i~~p~~~e~r~dI~~l~ 311 (765)
+.. |+.+.+..|....
T Consensus 1415 i~~-P~~~~l~~I~~~i 1430 (2695)
T 4akg_A 1415 LGY-PSGKSLSQIYEIY 1430 (2695)
T ss_dssp CCC-CTTTHHHHHHHHH
T ss_pred eCC-CCHHHHHHHHHHH
Confidence 874 5777777777644
No 117
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.53 E-value=5.1e-07 Score=97.35 Aligned_cols=67 Identities=21% Similarity=0.277 Sum_probs=50.0
Q ss_pred cCCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhh
Q 004256 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFED 303 (765)
Q Consensus 224 ~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~ 303 (765)
...|++|||++.|+...++.|+..|++. |.++++|.++| ....+.+.+.+|+.. +.+. |++.++
T Consensus 108 ~~kvviIdead~l~~~a~naLLk~lEep-------------~~~~~~Il~t~-~~~~l~~ti~SRc~~-~~~~-~~~~~~ 171 (334)
T 1a5t_A 108 GAKVVWVTDAALLTDAAANALLKTLEEP-------------PAETWFFLATR-EPERLLATLRSRCRL-HYLA-PPPEQY 171 (334)
T ss_dssp SCEEEEESCGGGBCHHHHHHHHHHHTSC-------------CTTEEEEEEES-CGGGSCHHHHTTSEE-EECC-CCCHHH
T ss_pred CcEEEEECchhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEeC-ChHhCcHHHhhccee-eeCC-CCCHHH
Confidence 3469999999999999999999999873 23566777777 456788999999864 3565 455554
Q ss_pred HHH
Q 004256 304 RVA 306 (765)
Q Consensus 304 r~d 306 (765)
..+
T Consensus 172 ~~~ 174 (334)
T 1a5t_A 172 AVT 174 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 118
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.49 E-value=6e-07 Score=95.48 Aligned_cols=147 Identities=15% Similarity=0.090 Sum_probs=83.7
Q ss_pred echHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCccc
Q 004256 99 GQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLK 178 (765)
Q Consensus 99 G~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (765)
||+.++..|.-..-.......||+||+|||||++|+++++. |. .|...
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~---------~~-~~~~~---------------------- 48 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY---------VE-KFPPK---------------------- 48 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH---------HH-TSCCC----------------------
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh---------Cc-hhhcc----------------------
Confidence 56777777743333333456999999999999999999873 11 12111
Q ss_pred ccccCCCeEeCCCCCcccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHHcCceEEEeC
Q 004256 179 TQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVERE 258 (765)
Q Consensus 179 ~~~~~~~~v~l~~~~~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~ 258 (765)
...|..+...- .-.|--++ +.+.... ...|- .+...|+||||++.|....++.||..|++.
T Consensus 49 ----~~d~~~l~~~~---~~~~id~i-r~li~~~-~~~p~---~~~~kvviIdead~lt~~a~naLLk~LEep------- 109 (305)
T 2gno_A 49 ----ASDVLEIDPEG---ENIGIDDI-RTIKDFL-NYSPE---LYTRKYVIVHDCERMTQQAANAFLKALEEP------- 109 (305)
T ss_dssp ----TTTEEEECCSS---SCBCHHHH-HHHHHHH-TSCCS---SSSSEEEEETTGGGBCHHHHHHTHHHHHSC-------
T ss_pred ----CCCEEEEcCCc---CCCCHHHH-HHHHHHH-hhccc---cCCceEEEeccHHHhCHHHHHHHHHHHhCC-------
Confidence 12333333210 00110000 0010000 00110 123469999999999999999999999974
Q ss_pred CeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecCCCCHhhHHHH
Q 004256 259 GISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAA 307 (765)
Q Consensus 259 G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~p~~~e~r~dI 307 (765)
|.++++|.++| ....+.+.+.+| .+.+. |+..++..+.
T Consensus 110 ------~~~t~fIl~t~-~~~kl~~tI~SR---~~~f~-~l~~~~i~~~ 147 (305)
T 2gno_A 110 ------PEYAVIVLNTR-RWHYLLPTIKSR---VFRVV-VNVPKEFRDL 147 (305)
T ss_dssp ------CTTEEEEEEES-CGGGSCHHHHTT---SEEEE-CCCCHHHHHH
T ss_pred ------CCCeEEEEEEC-ChHhChHHHHce---eEeCC-CCCHHHHHHH
Confidence 23456666665 456788999999 45676 4444443333
No 119
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=98.45 E-value=3.9e-06 Score=99.80 Aligned_cols=191 Identities=15% Similarity=0.053 Sum_probs=131.9
Q ss_pred cCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEE-------------------------
Q 004256 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVL------------------------- 613 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~------------------------- 613 (765)
..+..++||||+|.+ ..+++.+|.++...|. .+.++.+||||+|++. ..+.
T Consensus 130 p~pp~~vFvIDvS~~--a~~l~~l~~si~~~L~-~Lp~~~~VGlITf~~~-v~~y~l~~~~~~~~~vf~G~k~~~~~q~~ 205 (769)
T 2nut_A 130 QMPLIFLYVVDTCME--DEDLQALKESMQMSLS-LLPPTALVGLITFGRM-VQVHELGCEGISKSYVFRGTKDLSAKQLQ 205 (769)
T ss_dssp CCCCEEEEEEECCSC--HHHHHHHHHHHHHHHT-TSCTTCEEEEEEESSE-EEEEESSCCSSCEEEEEETTSCCCSHHHH
T ss_pred CCCCEEEEEEECCcc--HHHHHHHHHHHHHHHH-hCCCCceEEEEEeCCE-EEEEeCCCCCCccceeecCCccccHHHHH
Confidence 356789999999997 3578889999988885 6788899999999765 3320
Q ss_pred ----c------------------CCC-------ccHHHHHHHhhcCCC---------CCCChhHHHHHHHHHHHHhhhcc
Q 004256 614 ----L------------------PPS-------RSIAMARKRLERLPC---------GGGSPLAHGLSMAVRVGLNAEKS 655 (765)
Q Consensus 614 ----~------------------p~t-------~~~~~~~~~l~~l~~---------gG~T~l~~aL~~A~~~l~~~~~~ 655 (765)
+ |.. .....+...|+.|+. .+.+.++.||..|..++......
T Consensus 206 ~ml~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~ 285 (769)
T 2nut_A 206 EMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPN 285 (769)
T ss_dssp HHHC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCS
T ss_pred HHhCCCCcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccC
Confidence 0 111 123345677777765 45788999999999998853211
Q ss_pred CCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCC----------CCchhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCC
Q 004256 656 GDVGRIMIVAITDGRANISLKRSTDPEATASDAPR----------PSSQELKDEILEVAGKIYKAGMSLLVIDTENKFVS 725 (765)
Q Consensus 656 ~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~ 725 (765)
. + ..|++++.|-+|.|.+.-.... .+.+.. +-......-...+|..+.+.|+.+-++.++..+++
T Consensus 286 ~-G--GrI~~F~sg~pt~GpG~l~~r~--~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vd 360 (769)
T 2nut_A 286 T-G--ARIMMFIGGPATQGPGMVVGDE--LKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTG 360 (769)
T ss_dssp S-C--CEEEEEESSCCCSSSSCCSCSB--TTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCC
T ss_pred C-C--cEEEEEeCCCCCCCCCCCcCcc--cccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccC
Confidence 1 1 2578889999998865421111 011000 00001112245688888899999988888888889
Q ss_pred HHHHHHHHHHcCCeEEEcCCCChHHHHHHHHHH
Q 004256 726 TGFAKEIARVAQGKYYYLPNASDAVISATTKDA 758 (765)
Q Consensus 726 ~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~~ 758 (765)
...|+.|++.|||..++.++.+...+.+-+.+.
T Consensus 361 la~l~~l~~~TGG~~~~~~~F~~~~~~~~l~~~ 393 (769)
T 2nut_A 361 LLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRV 393 (769)
T ss_dssp HHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHT
T ss_pred hHHHHHHhhcCCceEEEcCCCchhhHHHHHHHH
Confidence 999999999999999999988876655554443
No 120
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.43 E-value=2e-06 Score=113.52 Aligned_cols=136 Identities=18% Similarity=0.083 Sum_probs=98.8
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCC-
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGV- 193 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~- 193 (765)
...|+++.||+|||||.+++.+++.+.+ +++.++|.-
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~------------------------------------------~~v~~nc~e~ 681 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGR------------------------------------------VVVVFNCDDS 681 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTC------------------------------------------CCEEEETTSS
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCC------------------------------------------cEEEEECCCC
Confidence 4578999999999999999999999864 333333331
Q ss_pred -cccceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHH-------HHHHHcCceEEEeCCeeEEee
Q 004256 194 -TEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL-------LNVLTEGVNIVEREGISFKHP 265 (765)
Q Consensus 194 -~e~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~L-------l~~l~~~~~~v~r~G~~~~~p 265 (765)
....+ |. ++ .|+ ...|.++++||||+++++++..| +.++.++...+.-.|.....+
T Consensus 682 ld~~~l-g~------~~-------~g~--~~~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~ 745 (2695)
T 4akg_A 682 FDYQVL-SR------LL-------VGI--TQIGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLS 745 (2695)
T ss_dssp CCHHHH-HH------HH-------HHH--HHHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECC
T ss_pred CChhHh-hH------HH-------HHH--HhcCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecC
Confidence 11111 11 01 111 12467999999999999998888 677777777788889888888
Q ss_pred CceEEEEeecCCC---CCcchHHHhhhhcceeecCCCCHhhHHHHHHH
Q 004256 266 CKPLLIATYNPEE---GVVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (765)
Q Consensus 266 ~~~~lIat~N~~e---g~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~l 310 (765)
..|.+++||||.- .++++.|..||-. |.+.. |+.+...+|...
T Consensus 746 ~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~-v~m~~-Pd~~~i~ei~l~ 791 (2695)
T 4akg_A 746 PHTAVFITLNPGYNGRSELPENLKKSFRE-FSMKS-PQSGTIAEMILQ 791 (2695)
T ss_dssp TTCEEEEEECCCSSSSCCCCHHHHTTEEE-EECCC-CCHHHHHHHHHH
T ss_pred CCceEEEEeCCCccCcccccHHHHhheEE-EEeeC-CCHHHHHHHHHH
Confidence 8999999999953 3688999999965 46764 577766666543
No 121
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.36 E-value=3.7e-06 Score=111.63 Aligned_cols=146 Identities=18% Similarity=0.239 Sum_probs=92.9
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCC--C
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPL--G 192 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~--~ 192 (765)
...||||+||+|||||++++.+...++. .+++.+++ .
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~-----------------------------------------~~~~~infS~~ 1341 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPD-----------------------------------------FEVVSLNFSSA 1341 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTT-----------------------------------------EEEEEECCCTT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCC-----------------------------------------CceEEEEeeCC
Confidence 5689999999999999887665444431 12233333 2
Q ss_pred CcccceeeecccccccccCCCcccC--Cceeecc--C--CeEeccccccCCH------HHHHHHHHHHHcCceEEEeCCe
Q 004256 193 VTEDRLIGSVDVEESVKTGTTVFQP--GLLAEAH--R--GVLYIDEINLLDE------GISNLLLNVLTEGVNIVEREGI 260 (765)
Q Consensus 193 ~~e~~L~G~~d~e~~~~~g~~~~~~--Gll~~A~--~--GiL~lDEi~~L~~------~~q~~Ll~~l~~~~~~v~r~G~ 260 (765)
.+...+.|.++ ... ...... |.+-.+- | .|+||||||.-.. .....|.++|+.|.... +.+.
T Consensus 1342 Tta~~l~~~~e--~~~---e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd-~~~~ 1415 (3245)
T 3vkg_A 1342 TTPELLLKTFD--HHC---EYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWR-TSDH 1415 (3245)
T ss_dssp CCHHHHHHHHH--HHE---EEEECTTSCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEE-TTTT
T ss_pred CCHHHHHHHHh--hcc---eEEeccCCCcccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEE-CCCC
Confidence 33344555432 100 011111 5444442 2 3899999997664 37889999999887544 3333
Q ss_pred eEEeeCceEEEEeecCCC--C--CcchHHHhhhhcceeecCCCCHhhHHHHHH
Q 004256 261 SFKHPCKPLLIATYNPEE--G--VVREHLLDRIAINLSADLPMTFEDRVAAVG 309 (765)
Q Consensus 261 ~~~~p~~~~lIat~N~~e--g--~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~ 309 (765)
....-.++.+||||||.. | .+++.|++||.++ .+.. |+.+....|..
T Consensus 1416 ~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi-~i~~-ps~esL~~If~ 1466 (3245)
T 3vkg_A 1416 TWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPIL-LVDF-PSTSSLTQIYG 1466 (3245)
T ss_dssp EEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEE-ECCC-CCHHHHHHHHH
T ss_pred eEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEE-EeCC-CCHHHHHHHHH
Confidence 333447999999999853 3 5889999999985 7875 46666666644
No 122
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.28 E-value=1.7e-06 Score=82.00 Aligned_cols=61 Identities=25% Similarity=0.323 Sum_probs=39.3
Q ss_pred CCeEeccccccCCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCC--CcchHHHhhhhcceeec
Q 004256 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG--VVREHLLDRIAINLSAD 296 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg--~l~~~L~dRf~~~v~i~ 296 (765)
..+|+|||+..++...+..|+++++... ..| ..++|.|+|.... ...++|.+||...+.+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~----~~g-------~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFR----NSG-------KGFLLLGSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHH----HHT-------CCEEEEEESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHH----HcC-------CcEEEEECCCCHHHccccHHHHHHHhcCeeEE
Confidence 4699999999998877888888876432 001 1224445663322 22299999997654443
No 123
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.28 E-value=1.6e-07 Score=91.56 Aligned_cols=51 Identities=20% Similarity=0.162 Sum_probs=34.1
Q ss_pred CCCCCCceeechH-HHHHH---H--Hhhh-cCCCCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 90 QFFPLAAVVGQDA-IKTAL---L--LGAI-DREIGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 90 ~~~~f~~ivG~~~-~~~aL---~--l~~~-~~~~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
+...|+.+++.++ .+.++ . +... .+...+++|+||+|||||+++++++..+
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567888886432 22333 1 1111 1235679999999999999999999876
No 124
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.25 E-value=5e-08 Score=96.99 Aligned_cols=51 Identities=20% Similarity=0.099 Sum_probs=34.7
Q ss_pred CCCCCceeechHH-H---HHH-HHhhhcCC---CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 91 FFPLAAVVGQDAI-K---TAL-LLGAIDRE---IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 91 ~~~f~~ivG~~~~-~---~aL-~l~~~~~~---~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
...|+.+++.+.. . ..+ ....-.+. ..+|+|+||+|||||++|++++..+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578889986632 2 222 11111111 17899999999999999999998764
No 125
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.12 E-value=5.7e-06 Score=83.56 Aligned_cols=62 Identities=26% Similarity=0.252 Sum_probs=49.6
Q ss_pred eEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCchhHHHHHHHHHHHHHhCCCEEEEEeCCCC----CCCHHHHHHHHHHc
Q 004256 661 IMIVAITDGRANISLKRSTDPEATASDAPRPSSQELKDEILEVAGKIYKAGMSLLVIDTENK----FVSTGFAKEIARVA 736 (765)
Q Consensus 661 ~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~----~~~~~~l~~LA~~~ 736 (765)
.+|||||||..|.|.+ ...+|+.+++.||.+++||+++. ..+...|++||+.+
T Consensus 11 k~iillTDG~~~~g~~-----------------------p~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~t 67 (242)
T 3rag_A 11 RQILVITDGCSNIGPD-----------------------PVEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAG 67 (242)
T ss_dssp EEEEEEESSCCCSSSC-----------------------HHHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHT
T ss_pred cEEEEEccCCCCCCCC-----------------------HHHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhc
Confidence 4799999999987521 25667778889999999999643 22458999999999
Q ss_pred CCeEEEcCC
Q 004256 737 QGKYYYLPN 745 (765)
Q Consensus 737 gG~y~~~~~ 745 (765)
||+||.+..
T Consensus 68 GG~yf~a~~ 76 (242)
T 3rag_A 68 GGMCRIVQP 76 (242)
T ss_dssp TSCEEEECG
T ss_pred CCeEEEeeH
Confidence 999999854
No 126
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=98.10 E-value=1.7e-05 Score=92.61 Aligned_cols=200 Identities=12% Similarity=0.114 Sum_probs=119.9
Q ss_pred cCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHh--hcCCCCeEEEEEeeCCC---------------------------
Q 004256 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGDS--------------------------- 609 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~--~~~~~d~v~lv~F~~~~--------------------------- 609 (765)
.-+.+++||+|.|+||. +-++.+|..+..|+.. .+...-|+|++.|.+..
T Consensus 109 ~~pvDly~LmD~S~SM~-ddi~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~c~~~ 187 (690)
T 3fcs_B 109 DYPVDIYYLMDLSYSMK-DDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPM 187 (690)
T ss_dssp TCCEEEEEEEECSGGGH-HHHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSCCCCC
T ss_pred CCCccEEEEecCCcchH-HHHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhhhccCCCcCCCCCCCCC
Confidence 45799999999999997 4445445444444322 34577899999997731
Q ss_pred --cEEEcCCCccHHHHHHHhhcCCCCCCCh----hHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCccc
Q 004256 610 --AEVLLPPSRSIAMARKRLERLPCGGGSP----LAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEA 683 (765)
Q Consensus 610 --a~~~~p~t~~~~~~~~~l~~l~~gG~T~----l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~ 683 (765)
...++++|.+...+.+.|..+..+|+-+ ..+||..|+---.+...+. ..+.+|||+||.-.....++..+.-.
T Consensus 188 f~f~~~l~lt~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~-~a~rllv~~TDa~~H~agDg~l~gi~ 266 (690)
T 3fcs_B 188 FGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRN-DASHLLVFTTDAKTHIALDGRLAGIV 266 (690)
T ss_dssp CSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SSEEEEEEEESSCBCCTTGGGGGTCC
T ss_pred ccceeecccCCCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCC-CceEEEEEECCCccccCCCcccccee
Confidence 1235778889999999999998776533 3344444431111222222 23568999999887653332100000
Q ss_pred CCCCCC----CCC--c-hhH---HHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHH
Q 004256 684 TASDAP----RPS--S-QEL---KDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISA 753 (765)
Q Consensus 684 ~~~~~~----~~~--~-~~~---~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~ 753 (765)
.|+.. ... + ... ...+.++++.+.+.+|.++..-+.. ....-++|++...|.++-.-..+...|..
T Consensus 267 -~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~i~~ifavt~~---~~~~y~~l~~~i~~s~v~~l~~dSsni~~ 342 (690)
T 3fcs_B 267 -QPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTEN---VVNLYQNYSELIPGTTVGVLSMDSSNVLQ 342 (690)
T ss_dssp -SCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEEEEEGG---GHHHHHHHHHHSTTCEEEEECTTCTTHHH
T ss_pred -cCCCcceeecCCCccccccccCCCCHHHHHHHHHHcCCeEEEEEeCC---chhhHHHHHhhcCCceeeeeccccHHHHH
Confidence 00000 000 0 000 0125778888888999866665554 35667788888776665544445556888
Q ss_pred HHHHHHHhhhc
Q 004256 754 TTKDALSALKN 764 (765)
Q Consensus 754 ~~~~~~~~~~~ 764 (765)
++..+-.++.+
T Consensus 343 li~~~y~~i~s 353 (690)
T 3fcs_B 343 LIVDAYGKIRS 353 (690)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHhhhc
Confidence 88888776653
No 127
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=98.04 E-value=0.00017 Score=85.80 Aligned_cols=191 Identities=13% Similarity=0.114 Sum_probs=130.0
Q ss_pred cCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhhcCCCCeEEEEEeeCCCcEEE-------------------------
Q 004256 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVL------------------------- 613 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~~~~~d~v~lv~F~~~~a~~~------------------------- 613 (765)
..+-.++||||+|.++ ..++.+|.++...|. .+.++.+||||+|++. ..+.
T Consensus 119 ~~pp~~vFvIDvs~~~--~~l~~l~~sl~~~L~-~Lp~~~~VGlITf~~~-V~~y~l~~~~~~~~~V~~g~k~~~~~q~~ 194 (768)
T 1m2o_A 119 TVPPIFFFVVDLTSET--ENLDSLKESIITSLS-LLPPNALIGLITYGNV-VQLHDLSSETIDRCNVFRGDREYQLEALT 194 (768)
T ss_dssp CSCCEEEEEEECCSCH--HHHHHHHHHHHHHHH-TSCTTCEEEEEEESSE-EEECCCSSSSSEEEEEEETTSCCCHHHHH
T ss_pred CCCCEEEEEEECCcCH--HHHHHHHHHHHHHHH-hCCCCCEEEEEEECCE-EEEEECCCCCCcceeeecCCccccHHHHH
Confidence 4567889999999886 457888988888886 6788899999999754 2210
Q ss_pred -----------------------cCC----C-------ccHHHHHHHhhcCCC---------CCCChhHHHHHHHHHHHH
Q 004256 614 -----------------------LPP----S-------RSIAMARKRLERLPC---------GGGSPLAHGLSMAVRVGL 650 (765)
Q Consensus 614 -----------------------~p~----t-------~~~~~~~~~l~~l~~---------gG~T~l~~aL~~A~~~l~ 650 (765)
.|. . .....+...|+.|+. ...+.++.||..|..++.
T Consensus 195 ~~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~ 274 (768)
T 1m2o_A 195 EMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQ 274 (768)
T ss_dssp HHHHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHH
T ss_pred HHHhhccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHh
Confidence 110 1 023346677788765 245679999999999987
Q ss_pred hhhccCCCCceEEEEEeCCCCCCCCCCCCCcccCCCCCCCCCc-----------hhHHHHHHHHHHHHHhCCCEEEEEeC
Q 004256 651 NAEKSGDVGRIMIVAITDGRANISLKRSTDPEATASDAPRPSS-----------QELKDEILEVAGKIYKAGMSLLVIDT 719 (765)
Q Consensus 651 ~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~a~~~~~~gi~~~vig~ 719 (765)
..... .+ ..|++++.|-+|.|.+.-.... .+... .+. .....-...++..+.+.|+.+-++-+
T Consensus 275 ~~~~~-~G--GrI~~F~sg~pt~GpG~l~~r~--~~~~~-rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~ 348 (768)
T 1m2o_A 275 GCYKN-IP--ARIILFASGPGTVAPGLIVNSE--LKDPL-RSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAG 348 (768)
T ss_dssp HHCTT-SC--CEEEEEESSCCCSSSSCCSCSB--TTSCC-CCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred hccCC-CC--cEEEEEeCCCCCCCCccccccc--ccccc-ccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEc
Confidence 53211 11 2588999999999865422111 11100 010 11122336778888888998888887
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHHHHHHH
Q 004256 720 ENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDAL 759 (765)
Q Consensus 720 ~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~~~~~~ 759 (765)
...+++...|..|++.|||..++.++.+...+.+-+.+.+
T Consensus 349 ~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~~~l~r~l 388 (768)
T 1m2o_A 349 CYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLF 388 (768)
T ss_dssp CSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHHHHHHTT
T ss_pred cCCccChHHHhhHhhcCCceEEEcCCCchHHHHHHHHHHH
Confidence 7778899999999999999999999888766555544433
No 128
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=98.01 E-value=5.3e-05 Score=90.56 Aligned_cols=179 Identities=15% Similarity=0.151 Sum_probs=118.5
Q ss_pred cCCceEEEEEeCCCCCCc-hhHHHHHHHHHHHHHhhcCC---CCeEEEEEeeCCCcEEE---------------------
Q 004256 559 KAGALVIFVVDASGSMAL-NRMQNAKGAALKLLAESYTC---RDQVSIIPFRGDSAEVL--------------------- 613 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~-~rl~~ak~a~~~ll~~~~~~---~d~v~lv~F~~~~a~~~--------------------- 613 (765)
..+-.++||||+|.++-. .-++.++.++...|. .+.. +.+||||+|++. ..+.
T Consensus 185 p~pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~-~Lp~~~~~~~VGlITfd~~-V~~~~l~~~~~g~k~~~~q~~mlvv 262 (810)
T 1pcx_A 185 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLD-SIPNHDERTRISILCVDNA-IHYFKIPLDSENNEESADQINMMDI 262 (810)
T ss_dssp CCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTT-TSCCTTSCCEEEEEEESSS-EEEEECCCGGGC-------CEEECC
T ss_pred CCCcEEEEEEECChHHHhhhHHHHHHHHHHHHHH-hCCCCCCCcEEEEEEECCE-EEEEecCccccCccccccchhhccc
Confidence 356789999999988743 346678887877775 4444 689999999766 3322
Q ss_pred ---------------cCCCccHHHHHHHhhcCC------CCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCC
Q 004256 614 ---------------LPPSRSIAMARKRLERLP------CGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRAN 672 (765)
Q Consensus 614 ---------------~p~t~~~~~~~~~l~~l~------~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n 672 (765)
+|+......+...|+.|+ ..+.+.++.||..|..++... + ..|++++.|-+|
T Consensus 263 ~dl~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~---G----GrI~~F~sg~pt 335 (810)
T 1pcx_A 263 ADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV---G----GKIIVVSGTLPN 335 (810)
T ss_dssp CCTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTT---C----EEEEEEESSCCC
T ss_pred cccccccCCCcccccccHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhc---C----CEEEEEecCCCC
Confidence 111123445556666553 246788999999999998742 1 258899999999
Q ss_pred CCCCCCCCcccCCCCCCCCCch------hHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCC
Q 004256 673 ISLKRSTDPEATASDAPRPSSQ------ELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNA 746 (765)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~ 746 (765)
.|.+.-.... .+.-....++ ....-...++..+.+.|+.+-++.+...+++...|..|++.|||..++.++.
T Consensus 336 ~GpG~l~~r~--~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F 413 (810)
T 1pcx_A 336 LGIGKLQRRN--ESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGF 413 (810)
T ss_dssp SSTTCCCC----------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETC
T ss_pred CCCCcccccc--cccccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCCC
Confidence 9865421110 0000000000 0011236678888889988877777777889999999999999998888776
Q ss_pred Ch
Q 004256 747 SD 748 (765)
Q Consensus 747 ~~ 748 (765)
+.
T Consensus 414 ~~ 415 (810)
T 1pcx_A 414 SG 415 (810)
T ss_dssp CT
T ss_pred cc
Confidence 54
No 129
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=98.00 E-value=0.0002 Score=78.52 Aligned_cols=199 Identities=14% Similarity=0.080 Sum_probs=122.2
Q ss_pred ccCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHh--hcCCCCeEEEEEeeCCC--------------------------
Q 004256 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGDS-------------------------- 609 (765)
Q Consensus 558 ~~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~--~~~~~d~v~lv~F~~~~-------------------------- 609 (765)
..-+.+++||+|.|+||. +-++.+|.....|+.. .....-|+|+..|.+..
T Consensus 119 ~~yPVDLyyLmDlS~SM~-ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~~~c~~~f 197 (454)
T 3vi3_B 119 EDYPIDLYYLMDLSYSMK-DDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTTPF 197 (454)
T ss_dssp SCCCEEEEEEEECSGGGH-HHHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSCSSSCCCCCC
T ss_pred CCCceeEEEEecCCcchh-hHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHhcCCCcCccCCCCCc
Confidence 345899999999999998 5566666666666543 23456799999997641
Q ss_pred -cEEEcCCCccHHHHHHHhhcCCCCCCCh----hHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcccC
Q 004256 610 -AEVLLPPSRSIAMARKRLERLPCGGGSP----LAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEAT 684 (765)
Q Consensus 610 -a~~~~p~t~~~~~~~~~l~~l~~gG~T~----l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~ 684 (765)
-..++++|.+.....+.+..+..+|+-+ .-+||..|+---.+...+. .+.+||++||.-.....++..+.-.
T Consensus 198 ~fr~~l~LT~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~--a~rllV~~TDa~fH~agDgkL~GIv- 274 (454)
T 3vi3_B 198 SYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRN--VTRLLVFSTDAGFHFAGDGKLGGIV- 274 (454)
T ss_dssp SEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS--SEEEEEEEESSCBCCTTTTGGGTCC-
T ss_pred ceeeeeecCCCHHHHHHHHhhccccCCCcCCchhHHHHHHHhccccccCCcc--ceEEEEEECCCCcCcCCCcccccee-
Confidence 1136788899999999999998877643 2344444331111222222 3668999999887654332110000
Q ss_pred CCCCC---------CCCchhHHHHHHHHHHHHHhCCCE-EEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHH
Q 004256 685 ASDAP---------RPSSQELKDEILEVAGKIYKAGMS-LLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISAT 754 (765)
Q Consensus 685 ~~~~~---------~~~~~~~~~~~~~~a~~~~~~gi~-~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~ 754 (765)
.|+.+ ..+...-..-+-++++++.+.+|. ||.| +.. ....-++|++...|..+-.=..+...|.++
T Consensus 275 ~PNDg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e~nI~~IFAV-t~~---~~~~Y~~L~~~ip~s~vg~Ls~dSsNiv~L 350 (454)
T 3vi3_B 275 LPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENNIQTIFAV-TEE---FQPVYKELKNLIPKSAVGTLSANSSNVIQL 350 (454)
T ss_dssp SCCCCCCCEETTEECCTTTSCCCCHHHHHHHHHHTTEEEEEEE-EGG---GHHHHHHHHHHSTTEEEEEECTTCTTHHHH
T ss_pred cCCCCccEeCCCcccccccCCCCCHHHHHHHHHhcCCcEEEEE-cCc---cchHHHHHHHhCCCceeeEccccchhHHHH
Confidence 00000 000000001356778888888876 4444 333 245778999998776655444455678888
Q ss_pred HHHHHHhhhc
Q 004256 755 TKDALSALKN 764 (765)
Q Consensus 755 ~~~~~~~~~~ 764 (765)
+..+-.++.+
T Consensus 351 I~~aY~~i~S 360 (454)
T 3vi3_B 351 IIDAYNSLSS 360 (454)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhe
Confidence 8888777654
No 130
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=97.97 E-value=4.8e-05 Score=83.95 Aligned_cols=202 Identities=13% Similarity=0.126 Sum_probs=120.8
Q ss_pred ccCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHh--hcCCCCeEEEEEeeCCCc-------------------------
Q 004256 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGDSA------------------------- 610 (765)
Q Consensus 558 ~~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~--~~~~~d~v~lv~F~~~~a------------------------- 610 (765)
..-+.+++||+|.|+||. +-++.+|.....|+.. .....-|+|+..|.+...
T Consensus 108 ~~ypvDLy~LmDlS~SM~-ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~~c~p 186 (472)
T 3t3p_B 108 EDYPVDIYYLMDLSYSMK-DDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLP 186 (472)
T ss_dssp SSCCEEEEEEEECSGGGH-HHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHHHHHCTTTTTTSCCCC
T ss_pred CCCCceEEEEEccCcchH-HHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhhhhcCCCcccccCCCC
Confidence 345899999999999997 5566666666665543 234567999999976411
Q ss_pred ----EEEcCCCccHHHHHHHhhcCCCCCCCh----hHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCcc
Q 004256 611 ----EVLLPPSRSIAMARKRLERLPCGGGSP----LAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPE 682 (765)
Q Consensus 611 ----~~~~p~t~~~~~~~~~l~~l~~gG~T~----l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~ 682 (765)
..++++|.+.....+.|..+..+|+-+ ..+||..|+---.+...+. ..+.+||++||.-.....++..+.-
T Consensus 187 ~f~fr~~l~LT~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~-~a~rllV~~TDa~~H~agDgkL~GI 265 (472)
T 3t3p_B 187 MFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRN-DASHLLVFTTDAKTHIALDGRLAGI 265 (472)
T ss_dssp CCSEEEEEEEESCHHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SSEEEEEEEESSCBCCTTGGGGGTC
T ss_pred CcceeEeeccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCC-CceEEEEEECCCCcCcCCCccccce
Confidence 125788889999999999998776643 3344444431101222222 2356899999987665433211000
Q ss_pred cC--C------CCCC-CCCchhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHH
Q 004256 683 AT--A------SDAP-RPSSQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISA 753 (765)
Q Consensus 683 ~~--~------~~~~-~~~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~ 753 (765)
.. + .+.. ..+...-..-+-++.+.+.+.+|..+.-=+.. ....-++|++...|..+-.=..+...|.+
T Consensus 266 v~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e~nI~~IFAVt~~---~~~~Y~~L~~~ip~s~vg~L~~dSsNiv~ 342 (472)
T 3t3p_B 266 VQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTEN---VVNLYQNYSELIPGTTVGVLSMDSSNVLQ 342 (472)
T ss_dssp CCCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHHTTCEEEEEECGG---GHHHHHHHHHTSTTCEEEECCTTSTTHHH
T ss_pred ecCCCCceEECCCCcccccccCCCCCHHHHHHHHHhcCccEEEEEecc---chhHHHHHHHhCCCceeeeccccchhHHH
Confidence 00 0 0000 00000001135677788888887644333433 35677889988766655443345567888
Q ss_pred HHHHHHHhhhc
Q 004256 754 TTKDALSALKN 764 (765)
Q Consensus 754 ~~~~~~~~~~~ 764 (765)
++..+-.++.+
T Consensus 343 LI~~aY~~i~s 353 (472)
T 3t3p_B 343 LIVDAYGKIRS 353 (472)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhhe
Confidence 88888877654
No 131
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=97.93 E-value=5.5e-05 Score=83.79 Aligned_cols=200 Identities=12% Similarity=0.049 Sum_probs=120.9
Q ss_pred ccCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHhh--cCCCCeEEEEEeeCCC--------------------------
Q 004256 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDS-------------------------- 609 (765)
Q Consensus 558 ~~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~~--~~~~d~v~lv~F~~~~-------------------------- 609 (765)
..-+.+++||+|.|+||. +-++.+|.....|+... ....-|+|+..|.+..
T Consensus 129 ~~yPVDLyyLmDlS~SM~-ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~l~~PC~~~~~~c~p~ 207 (503)
T 3v4v_B 129 EGYPVDLYYLMDLSYSMK-DDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLERCQSP 207 (503)
T ss_dssp SSCCEEEEEEEECSGGGH-HHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHHHHCCSSCSSSCCCCC
T ss_pred CCCceeEEEEEecCcchh-hHHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHHhcCCCcCCCCCCCCC
Confidence 445899999999999997 56666676666665432 3456799999996631
Q ss_pred --cEEEcCCCccHHHHHHHhhcCCCCCCCh----hHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCccc
Q 004256 610 --AEVLLPPSRSIAMARKRLERLPCGGGSP----LAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEA 683 (765)
Q Consensus 610 --a~~~~p~t~~~~~~~~~l~~l~~gG~T~----l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~ 683 (765)
-..++++|.+.....+.|..+..+|+-+ ..+||..|+---.+...+. .+.+|||+||.-.....++..+.-.
T Consensus 208 f~fr~~l~LT~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~IgWR~--a~rllV~~TDA~fH~agDgkLaGIv 285 (503)
T 3v4v_B 208 FSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGWRN--VSRLLVFTSDDTFHTAGDGKLGGIF 285 (503)
T ss_dssp CSEEEEEEEESCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS--SEEEEEEEESSCBCCTTGGGTTTCC
T ss_pred cceEEEEEecCCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhcccccCCCc--ceEEEEEECCCCcCcCCCcccccee
Confidence 1226788889999999999998776643 3344444431101222322 2458999999877654332111000
Q ss_pred CCCCCC----CC------CchhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHH
Q 004256 684 TASDAP----RP------SSQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISA 753 (765)
Q Consensus 684 ~~~~~~----~~------~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~ 753 (765)
.|+.+ .. +...-..-+-++.+.+.+.+|..+.-=+.. ....-++|++...|..+-.=..+...|.+
T Consensus 286 -~pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~ennI~~IFAVt~~---~~~~Y~~L~~~ip~s~vg~Ls~dSsNiv~ 361 (503)
T 3v4v_B 286 -MPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAANIQPIFAVTSA---ALPVYQELSKLIPKSAVGELSEDSSNVVQ 361 (503)
T ss_dssp -SCCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHTEEEEEEECSS---SHHHHHHHHTTSTTCEEEECCTTSCTHHH
T ss_pred -cCCCCCeEECCCCccccccccCCCCHHHHHHHHHhcCCeEEEEEccc---chhHHHHHHHhCCCceeeEccccchhHHH
Confidence 00000 00 000001135677778888887644222333 35678889988776655544445567888
Q ss_pred HHHHHHHhhhc
Q 004256 754 TTKDALSALKN 764 (765)
Q Consensus 754 ~~~~~~~~~~~ 764 (765)
++..+-.++.+
T Consensus 362 LI~~aY~~i~S 372 (503)
T 3v4v_B 362 LIMDAYNSLSS 372 (503)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhe
Confidence 88888777654
No 132
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=97.90 E-value=9.6e-06 Score=94.45 Aligned_cols=199 Identities=11% Similarity=0.043 Sum_probs=113.5
Q ss_pred ccCCceEEEEEeCCCCCCchhHHHHHHHHHHHHHh--hcCCCCeEEEEEeeCCC--------------------------
Q 004256 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGDS-------------------------- 609 (765)
Q Consensus 558 ~~~~~~vv~vvD~SgSM~~~rl~~ak~a~~~ll~~--~~~~~d~v~lv~F~~~~-------------------------- 609 (765)
..-+.+++||+|.|+||. +-++.+|..+..|+.. .....-|+|+..|.+..
T Consensus 101 ~~ypvDly~LmD~S~SM~-ddi~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c~~~ 179 (687)
T 3k6s_B 101 KGYPIDLYYLMDLSYSML-DDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPP 179 (687)
T ss_dssp CCCCCEEEEEEECSSTTH-HHHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCCCCC
T ss_pred CCCceeEEEEEcCCcchH-HHHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchhccCCCCCCCCCcCCc
Confidence 345799999999999997 4444444444333322 34577899999997631
Q ss_pred --cEEEcCCCccHHHHHHHhhcCCCCCCCh----hHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCCccc
Q 004256 610 --AEVLLPPSRSIAMARKRLERLPCGGGSP----LAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEA 683 (765)
Q Consensus 610 --a~~~~p~t~~~~~~~~~l~~l~~gG~T~----l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~ 683 (765)
-..++++|.+...+.+.|..+..+|+-+ ..+||..|+---.+...+. .+.+|||+||.-.....++..+.-.
T Consensus 180 f~f~~~l~lt~~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~--a~rllV~~TDa~~H~agDg~l~gi~ 257 (687)
T 3k6s_B 180 FAFRHVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRN--VTRLLVFATDDGFHFAGDGKLGAIL 257 (687)
T ss_dssp CSCEEEEEEESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCS--SCCEEEEECSSCCCCTTGGGGGTCC
T ss_pred ccceeecccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhhcccccCCcc--ceEEEEEECCCccccCCCcccccee
Confidence 1235778889999999999998776533 3344444430001222222 3458999999886643322100000
Q ss_pred CCCCCC--------CC-CchhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHHHHHH
Q 004256 684 TASDAP--------RP-SSQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISAT 754 (765)
Q Consensus 684 ~~~~~~--------~~-~~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~l~~~ 754 (765)
.|+.+ .. +...-...+.++++.+.+.+|.++..-+.. ....-++|++...+.++-.-..+...|..+
T Consensus 258 -~pndg~Chl~~~~y~~s~~~DyPS~~ql~~~l~~~~I~~ifavt~~---~~~~y~~l~~~i~~s~v~~L~~dSsni~~l 333 (687)
T 3k6s_B 258 -TPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSR---MVKTYEKLTEIIPKSAVGELSEDSSNVVQL 333 (687)
T ss_dssp -CCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCBCCEEECGG---GHHHHHHHHHHSSSCCEEECCTTCCSCGGG
T ss_pred -cCCCCccccCCCccccccccCCCCHHHHHHHHHHcCCeEEEEEecc---chhhHHHHHhhcCCceeeeeccccHHHHHH
Confidence 00000 00 000000114567777888898776666664 356778888887665554433444446666
Q ss_pred HHHHHHhhh
Q 004256 755 TKDALSALK 763 (765)
Q Consensus 755 ~~~~~~~~~ 763 (765)
+..+-.++.
T Consensus 334 i~~ay~~i~ 342 (687)
T 3k6s_B 334 IKNAYNKLS 342 (687)
T ss_dssp TTTHHHHHS
T ss_pred HHHHHHhhh
Confidence 665555543
No 133
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.87 E-value=6.2e-05 Score=100.19 Aligned_cols=136 Identities=19% Similarity=0.089 Sum_probs=91.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCCcchhcccccCCCCCCCCcccccccccccccccCcccccccCCCeEeCCCCCcc
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e 195 (765)
..+..+.||+|||||.+++.+++.+.+.-+ -|||+.. +..
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~----vfnC~~~------------------------------------~d~ 643 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVL----VFCCDEG------------------------------------FDL 643 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEE----EEECSSC------------------------------------CCH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEE----EEeCCCC------------------------------------CCH
Confidence 456689999999999999999999875211 1344221 100
Q ss_pred cceeeecccccccccCCCcccCCceeeccCCeEeccccccCCHHHHHHHHHHHH-------cCceEEEeC-CeeEEeeCc
Q 004256 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT-------EGVNIVERE-GISFKHPCK 267 (765)
Q Consensus 196 ~~L~G~~d~e~~~~~g~~~~~~Gll~~A~~GiL~lDEi~~L~~~~q~~Ll~~l~-------~~~~~v~r~-G~~~~~p~~ 267 (765)
..+|. +..|+. ..|..+++||||+++.+++..+.+.+. ++..++.-. |........
T Consensus 644 -~~~g~-------------i~~G~~--~~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~ 707 (3245)
T 3vkg_A 644 -QAMSR-------------IFVGLC--QCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQD 707 (3245)
T ss_dssp -HHHHH-------------HHHHHH--HHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTT
T ss_pred -HHHHH-------------HHhhHh--hcCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCC
Confidence 11121 112322 247789999999999999888777554 444345555 777888889
Q ss_pred eEEEEeecCCC---CCcchHHHhhhhcceeecCCCCHhhHHHHHH
Q 004256 268 PLLIATYNPEE---GVVREHLLDRIAINLSADLPMTFEDRVAAVG 309 (765)
Q Consensus 268 ~~lIat~N~~e---g~l~~~L~dRf~~~v~i~~p~~~e~r~dI~~ 309 (765)
+.++.||||.- .++++.|..||-.+ .+.. |+.+...+|..
T Consensus 708 ~~vfiTmNpgY~gr~eLP~nLk~lFr~v-~m~~-Pd~~~i~ei~L 750 (3245)
T 3vkg_A 708 MGIFVTMNPGYAGRSNLPDNLKKLFRSM-AMIK-PDREMIAQVML 750 (3245)
T ss_dssp CEEEECBCCCGGGCCCSCHHHHTTEEEE-ECCS-CCHHHHHHHHH
T ss_pred eEEEEEeCCCccCcccChHHHHhhcEEE-EEeC-CCHHHHHHHHH
Confidence 99999999942 47899999999764 6765 47776666654
No 134
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.86 E-value=1.3e-06 Score=92.93 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=33.4
Q ss_pred CCCCCceeech-HHHHHH----HHhh-hcC-CCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 91 FFPLAAVVGQD-AIKTAL----LLGA-IDR-EIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 91 ~~~f~~ivG~~-~~~~aL----~l~~-~~~-~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
...|+.+++.. ....++ .... ..+ ...+|+|+||+|||||+||++|+..+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 35678888644 222222 1111 111 147899999999999999999998653
No 135
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=97.73 E-value=0.0002 Score=86.19 Aligned_cols=179 Identities=15% Similarity=0.157 Sum_probs=118.0
Q ss_pred cCCceEEEEEeCCCCCCc-hhHHHHHHHHHHHHHhhcCC---CCeEEEEEeeCCCcEEE---------------------
Q 004256 559 KAGALVIFVVDASGSMAL-NRMQNAKGAALKLLAESYTC---RDQVSIIPFRGDSAEVL--------------------- 613 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM~~-~rl~~ak~a~~~ll~~~~~~---~d~v~lv~F~~~~a~~~--------------------- 613 (765)
..+-.++||||+|.+... .-+..++.++...|. .+.. +.+||||+|++. ..+.
T Consensus 301 p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~-~LP~~~~~~~VGlITFds~-Vh~y~l~~~~~g~k~~~~q~qmlvv 378 (926)
T 1m2v_B 301 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLD-SIPNHDERTRISILCVDNA-IHYFKIPLDSENNEESADQINMMDI 378 (926)
T ss_dssp CCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTT-TSCCTTSCCEECEEEESSS-EEEEECCCC---------CCEEEEE
T ss_pred CCCcEEEEEEECCHHHHhhhHHHHHHHHHHHHHH-hCCCCCCCcEEEEEEECCE-EEEEecCCcccCCcccccchhhccc
Confidence 356789999999987632 236677777777775 3444 579999999765 2211
Q ss_pred ---------------cCCCccHHHHHHHhhcCC------CCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCC
Q 004256 614 ---------------LPPSRSIAMARKRLERLP------CGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRAN 672 (765)
Q Consensus 614 ---------------~p~t~~~~~~~~~l~~l~------~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n 672 (765)
+|+......+...|+.|+ ....+.++.||..|..+|... + ..|++++.|-+|
T Consensus 379 sdl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~~---G----GrI~~F~sg~Pt 451 (926)
T 1m2v_B 379 ADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV---G----GKIIVVSGTLPN 451 (926)
T ss_dssp CCCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTT---C----EEEEEEESSCCC
T ss_pred cccccccCCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHhh---C----CEEEEEecCCCC
Confidence 111224556666666654 245778999999999998742 1 258899999999
Q ss_pred CCCCCCCCcccCCCCCCCCCchhH------HHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCC
Q 004256 673 ISLKRSTDPEATASDAPRPSSQEL------KDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNA 746 (765)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~ 746 (765)
.|.+.-.... .+.-....++.. ..-...++..+.+.|+.+-++-+...+++...|..|++.|||..++.++.
T Consensus 452 ~GpG~l~~re--~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~F 529 (926)
T 1m2v_B 452 LGIGKLQRRN--ESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGF 529 (926)
T ss_dssp SSTTCCCCCC--C----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESC
T ss_pred CCCCcccccc--cccccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEcCCC
Confidence 9865421111 000000001100 01236778888888988777777777889999999999999998888776
Q ss_pred Ch
Q 004256 747 SD 748 (765)
Q Consensus 747 ~~ 748 (765)
+.
T Consensus 530 ~~ 531 (926)
T 1m2v_B 530 SG 531 (926)
T ss_dssp CT
T ss_pred cc
Confidence 54
No 136
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.55 E-value=9.2e-05 Score=73.20 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=24.0
Q ss_pred CCCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 114 ~~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|...++||+||||||||++|.+|++.+.
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4445799999999999999999998763
No 137
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=97.50 E-value=0.0024 Score=75.81 Aligned_cols=184 Identities=11% Similarity=0.111 Sum_probs=119.5
Q ss_pred ccCCceEEEEEeCCCC-CCchhHHHHHHHHHHHHHhhcCC-------CCeEEEEEeeCC-----------CcEE------
Q 004256 558 RKAGALVIFVVDASGS-MALNRMQNAKGAALKLLAESYTC-------RDQVSIIPFRGD-----------SAEV------ 612 (765)
Q Consensus 558 ~~~~~~vv~vvD~SgS-M~~~rl~~ak~a~~~ll~~~~~~-------~d~v~lv~F~~~-----------~a~~------ 612 (765)
...+-.++||||+|-+ ....-+..+++++...|. .+.. +.+||+|+|+.. ..+.
T Consensus 174 ~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~-~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~ 252 (770)
T 3efo_B 174 PPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLE-KIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDV 252 (770)
T ss_dssp CCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGG-GCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCT
T ss_pred CCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHH-hCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEeccc
Confidence 3356788899999864 222356778888888875 4443 259999999754 0111
Q ss_pred ---EcC--------CCccHHHHHHHhhcCC------CCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCC-CC
Q 004256 613 ---LLP--------PSRSIAMARKRLERLP------CGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRAN-IS 674 (765)
Q Consensus 613 ---~~p--------~t~~~~~~~~~l~~l~------~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n-~~ 674 (765)
.+| +......+...|+.|+ ....|.++.+|..|+..+..... + ..|++++-|.|+ .|
T Consensus 253 ~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~-G----GkI~~F~s~lP~t~G 327 (770)
T 3efo_B 253 GEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADC-P----GKLFIFHSSLPTAEA 327 (770)
T ss_dssp TSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTC-C----EEEEEEECSCCCSSS
T ss_pred ccccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccCCC-C----cEEEEEecCCCCcCC
Confidence 122 2235556666666653 34578899999999888764322 1 257888889888 56
Q ss_pred CCCCCCcccCCCCCCCCCch-----hHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChH
Q 004256 675 LKRSTDPEATASDAPRPSSQ-----ELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDA 749 (765)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~ 749 (765)
.+.-.... .+......++ ....-...+|..+.+.|+.+-++-+...+++...|..|++.|||..++-++.+..
T Consensus 328 pG~l~~r~--~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~ 405 (770)
T 3efo_B 328 PGKLKNRD--DKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNFQMH 405 (770)
T ss_dssp TTCCCCCC--CCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHH
T ss_pred Cccccccc--cccccCCcchhhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCceEEEecCCcch
Confidence 54321111 0100000010 0112346788888899998888888888889999999999999999999988753
No 138
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=97.49 E-value=0.0017 Score=76.79 Aligned_cols=176 Identities=15% Similarity=0.162 Sum_probs=117.8
Q ss_pred cCCceEEEEEeCCCCC-CchhHHHHHHHHHHHHHhhcCCCC--eEEEEEeeCCCcE------------E-----------
Q 004256 559 KAGALVIFVVDASGSM-ALNRMQNAKGAALKLLAESYTCRD--QVSIIPFRGDSAE------------V----------- 612 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM-~~~rl~~ak~a~~~ll~~~~~~~d--~v~lv~F~~~~a~------------~----------- 612 (765)
..+-.++||||+|-.- ...-++.++.++...|. .+.... +||+|+|+.. .+ .
T Consensus 158 p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~-~lp~~~~~~VG~ITfd~~-vh~y~l~~~~~~~qmlvv~dl~d~f~ 235 (751)
T 3eh1_A 158 PQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLD-KLPGDSRTRIGFMTFDST-IHFYNLQEGLSQPQMLIVSDIDDVFL 235 (751)
T ss_dssp CCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTT-TSSCCTTCEEEEEEESSS-EEEEECCTTCSSCEEEEESCTTCTTS
T ss_pred CCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHH-hcCCCcCcEEEEEEeCCE-EEEEECCCCcccceeeccccccccCC
Confidence 3577889999998632 11346677777777775 444433 8999999765 21 1
Q ss_pred ------EcCCCccHHHHHHHhhcCCC------CCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCCCCCCCCCC
Q 004256 613 ------LLPPSRSIAMARKRLERLPC------GGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTD 680 (765)
Q Consensus 613 ------~~p~t~~~~~~~~~l~~l~~------gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~ 680 (765)
++|+......+...|+.|+. ...+.++.||..|..++... + ..|++++.|-+|.|.+.-..
T Consensus 236 P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~~---G----GrI~~F~sg~pt~GpG~l~~ 308 (751)
T 3eh1_A 236 PTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPT---G----GRVSVFQTQLPSLGAGLLQS 308 (751)
T ss_dssp CCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTT---C----EEEEEEECSCCCSSTTCCCC
T ss_pred CChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhcC---C----CEEEEEecCCCCCCCCcccc
Confidence 11222355667777777652 23467999999999988641 1 25788999999998654221
Q ss_pred cccCCCCCCCCC-------chhHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCC
Q 004256 681 PEATASDAPRPS-------SQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNAS 747 (765)
Q Consensus 681 ~~~~~~~~~~~~-------~~~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~ 747 (765)
.. ++...+ ......-...+|..+.+.|+.+-++-+...+++...|..+++.|||..++-++.+
T Consensus 309 r~----~~~~~~~~ke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~ 378 (751)
T 3eh1_A 309 RE----DPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFH 378 (751)
T ss_dssp CC----CSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCB
T ss_pred cc----ccccCCCchhhhhhcchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCcc
Confidence 11 100000 0001123467888888999998888888888899999999999999999988765
No 139
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=97.47 E-value=0.0021 Score=76.26 Aligned_cols=184 Identities=11% Similarity=0.080 Sum_probs=119.2
Q ss_pred cCCceEEEEEeCCCCC-CchhHHHHHHHHHHHHHhhcCC-------CCeEEEEEeeCC-----------CcE--------
Q 004256 559 KAGALVIFVVDASGSM-ALNRMQNAKGAALKLLAESYTC-------RDQVSIIPFRGD-----------SAE-------- 611 (765)
Q Consensus 559 ~~~~~vv~vvD~SgSM-~~~rl~~ak~a~~~ll~~~~~~-------~d~v~lv~F~~~-----------~a~-------- 611 (765)
..+-.++||||+|-+- ...-+..+++++...|. .+.. +.+||+|+|+.. ...
T Consensus 171 p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~-~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~ 249 (766)
T 3eh2_A 171 PSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLD-FLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVA 249 (766)
T ss_dssp CCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGG-GCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred CCCCEEEEEEECchhhccchHHHHHHHHHHHHHH-hCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecChh
Confidence 3467888999998532 12346677888888876 3443 369999999764 011
Q ss_pred ---------EEcCCCccHHHHHHHhhcCC------CCCCChhHHHHHHHHHHHHhhhccCCCCceEEEEEeCCCCC-CCC
Q 004256 612 ---------VLLPPSRSIAMARKRLERLP------CGGGSPLAHGLSMAVRVGLNAEKSGDVGRIMIVAITDGRAN-ISL 675 (765)
Q Consensus 612 ---------~~~p~t~~~~~~~~~l~~l~------~gG~T~l~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n-~~~ 675 (765)
.++|+......+...|+.|+ ...+|.++.+|..|+..+..... ...|++++.|.|+ .|.
T Consensus 250 d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~-----GGkI~~F~s~lP~t~Gp 324 (766)
T 3eh2_A 250 DMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAEC-----AGKLFLFHTSLPIAEAP 324 (766)
T ss_dssp TCCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTC-----CEEEEEEECSCCCSSST
T ss_pred hhccccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccCCC-----CcEEEEEecCCCCcCCC
Confidence 12222235566666666653 34578899999999888764321 1257888889888 465
Q ss_pred CCCCCcccCCCCCCCCCch-----hHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCHHHHHHHHHHcCCeEEEcCCCChHH
Q 004256 676 KRSTDPEATASDAPRPSSQ-----ELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAV 750 (765)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~gi~~~vig~~~~~~~~~~l~~LA~~~gG~y~~~~~~~~~~ 750 (765)
+.-.... .+......++ ....-...+|..+.+.|+.+-++-+...+++...|..|++.|||..++.++.+...
T Consensus 325 G~l~~r~--~~~~~~sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~ 402 (766)
T 3eh2_A 325 GKLKNRD--DRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVEN 402 (766)
T ss_dssp TCCCCCC--CGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHH
T ss_pred ccccccc--ccccCCCcchhhhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceEEEeCCCcchh
Confidence 4321111 0000000000 01133467888888899888888888888899999999999999999999887653
No 140
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.26 E-value=0.00032 Score=72.40 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=23.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..+|+|+||||||||++|++|+..++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 45699999999999999999998754
No 141
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.20 E-value=0.00034 Score=68.42 Aligned_cols=28 Identities=18% Similarity=0.538 Sum_probs=23.3
Q ss_pred CCeEeccccccCCHHHHHHHHHHHHcCc
Q 004256 225 RGVLYIDEINLLDEGISNLLLNVLTEGV 252 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~~q~~Ll~~l~~~~ 252 (765)
..+|+|||++.+++++++.|..+++.+.
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~~~ 104 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDRGI 104 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHTTC
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHCCC
Confidence 3589999999998888888888887754
No 142
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.19 E-value=0.00081 Score=66.59 Aligned_cols=60 Identities=7% Similarity=-0.041 Sum_probs=40.1
Q ss_pred CCeEeccccccC--CH-HH--HHHHHHHHHcCceEEEeCCeeEEeeCceEEEEeecCCCCCcchHHHhhhhcceeecC
Q 004256 225 RGVLYIDEINLL--DE-GI--SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADL 297 (765)
Q Consensus 225 ~GiL~lDEi~~L--~~-~~--q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lIat~N~~eg~l~~~L~dRf~~~v~i~~ 297 (765)
+.+|+|||++.+ +. .. ...++..++... ...+.+|.++++ ...+..+|.+|+...+.+..
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r------------~~~~~iil~tq~-~~~l~~~lr~ri~~~~~l~~ 152 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR------------HQGIDIFVLTQG-PKLLDQNLRTLVRKHYHIAS 152 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT------------TTTCEEEEEESC-GGGBCHHHHTTEEEEEEEEE
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcC------------cCCeEEEEECCC-HHHHhHHHHHHhheEEEEcC
Confidence 789999999998 32 11 123555555433 013456666675 67888999999999887763
No 143
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.01 E-value=0.00051 Score=73.44 Aligned_cols=43 Identities=14% Similarity=-0.007 Sum_probs=35.5
Q ss_pred CceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 95 AAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 95 ~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..++|.+.....|.- +.. ..|+|+|++|+|||++++.+.+...
T Consensus 13 ~~~~gR~~el~~L~~--l~~--~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 13 KDFFDREKEIEKLKG--LRA--PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp GGSCCCHHHHHHHHH--TCS--SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHhcChHHHHHHHHH--hcC--CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 568999998888755 433 6899999999999999999987653
No 144
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.90 E-value=0.0023 Score=68.60 Aligned_cols=126 Identities=13% Similarity=-0.013 Sum_probs=78.5
Q ss_pred CCeEecccccc-CCHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEEE-EeecCCC----CCcchHHHhhhhcceeecCC
Q 004256 225 RGVLYIDEINL-LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLI-ATYNPEE----GVVREHLLDRIAINLSADLP 298 (765)
Q Consensus 225 ~GiL~lDEi~~-L~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~lI-at~N~~e----g~l~~~L~dRf~~~v~i~~p 298 (765)
.-+++|||++. ++...++.|+..+++- |.+.++| ++++.+. ..+.+.+..|..+ +.+. |
T Consensus 77 ~kvvii~~~~~kl~~~~~~aLl~~le~p-------------~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~-~~~~-~ 141 (343)
T 1jr3_D 77 RQTLLLLLPENGPNAAINEQLLTLTGLL-------------HDDLLLIVRGNKLSKAQENAAWFTALANRSVQ-VTCQ-T 141 (343)
T ss_dssp CEEEEEECCSSCCCTTHHHHHHHHHTTC-------------BTTEEEEEEESCCCTTTTTSHHHHHHTTTCEE-EEEC-C
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHhcC-------------CCCeEEEEEcCCCChhhHhhHHHHHHHhCceE-EEee-C
Confidence 45899999999 9999999999999862 2233444 4434332 3455677777644 3565 3
Q ss_pred CCHhhHHHHHHHHHHHHHhhHHHhccccccCcHHHHHHHHHhcccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 004256 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (765)
Q Consensus 299 ~~~e~r~dI~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~a~~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A 378 (765)
+..++ +....... +.. .++.+++++++.|++.+ +. +.|...+.+.-.
T Consensus 142 l~~~~---l~~~l~~~----------------------~~~----~g~~i~~~a~~~l~~~~---~g-dl~~~~~elekl 188 (343)
T 1jr3_D 142 PEQAQ---LPRWVAAR----------------------AKQ----LNLELDDAANQVLCYCY---EG-NLLALAQALERL 188 (343)
T ss_dssp CCTTH---HHHHHHHH----------------------HHH----TTCEECHHHHHHHHHSS---TT-CHHHHHHHHHHH
T ss_pred CCHHH---HHHHHHHH----------------------HHH----cCCCCCHHHHHHHHHHh---ch-HHHHHHHHHHHH
Confidence 33332 32222111 111 25889999988886543 33 567777766654
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHH
Q 004256 379 KCLAALEGREKVNVDDLKKAVEL 401 (765)
Q Consensus 379 ~a~A~l~gr~~Vt~edv~~A~~l 401 (765)
.. +.+...|+.+||...+..
T Consensus 189 ~l---~~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 189 SL---LWPDGKLTLPRVEQAVND 208 (343)
T ss_dssp HH---HCTTCEECHHHHHHHHHH
T ss_pred HH---hcCCCCCCHHHHHHHHhh
Confidence 33 334558999999888764
No 145
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.88 E-value=0.00042 Score=77.74 Aligned_cols=53 Identities=17% Similarity=0.252 Sum_probs=35.3
Q ss_pred cCCCCCCCcee-echHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 88 GRQFFPLAAVV-GQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 88 ~~~~~~f~~iv-G~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
+.++.+|..+- +|..+...+.-. +....++++|.|++|||||+++..+...+.
T Consensus 17 ~~~p~~~~~Ln~~Q~~av~~~~~~-i~~~~~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 17 RGSHMTFDDLTEGQKNAFNIVMKA-IKEKKHHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp ----CCSSCCCHHHHHHHHHHHHH-HHSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccCCCccccCCHHHHHHHHHHHHH-HhcCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35667777775 566665555322 222345999999999999999999988763
No 146
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.65 E-value=0.0023 Score=73.67 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=22.8
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.+.++|.|+||||||++++.+...+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999987653
No 147
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.70 E-value=0.014 Score=67.61 Aligned_cols=25 Identities=40% Similarity=0.296 Sum_probs=21.1
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
...++|.|+||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4679999999999999988776554
No 148
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.67 E-value=0.014 Score=58.62 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=20.3
Q ss_pred CeEeccccccCCHHHHHHHHHHHHcC
Q 004256 226 GVLYIDEINLLDEGISNLLLNVLTEG 251 (765)
Q Consensus 226 GiL~lDEi~~L~~~~q~~Ll~~l~~~ 251 (765)
.+|+|||++.|+.++...|..+.+.+
T Consensus 91 dvViIDEaQ~l~~~~ve~l~~L~~~g 116 (223)
T 2b8t_A 91 KVIGIDEVQFFDDRICEVANILAENG 116 (223)
T ss_dssp CEEEECSGGGSCTHHHHHHHHHHHTT
T ss_pred CEEEEecCccCcHHHHHHHHHHHhCC
Confidence 58999999999988777666655544
No 149
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.11 E-value=0.019 Score=61.91 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=23.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.+-++|.||+|+||||+.++|..+++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 45799999999999999999988765
No 150
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.02 E-value=0.011 Score=56.44 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|+|.|++|+||||+++.|++.++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3589999999999999999999876
No 151
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.73 E-value=0.015 Score=55.27 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|+|.|++|+||||+++.|+..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999875
No 152
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.41 E-value=0.015 Score=54.90 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=21.7
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.|++|+||||+++.|++.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998764
No 153
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.97 E-value=0.025 Score=53.84 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=19.7
Q ss_pred cEEEECCCCcHHHHHHHHHHh
Q 004256 118 GIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
-|+|.|+||+||||+|+.|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 488999999999999999998
No 154
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.96 E-value=0.022 Score=54.42 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=22.0
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|++|+||||+++.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 155
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.82 E-value=0.046 Score=57.80 Aligned_cols=44 Identities=11% Similarity=0.056 Sum_probs=35.1
Q ss_pred CceeechHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 95 AAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 95 ~~ivG~~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
..++|++.....|.-.... ...++|+|++|+|||++++.+.+..
T Consensus 12 ~~~~gR~~el~~L~~~l~~--~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN--YPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH--CSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HhcCChHHHHHHHHHHHhc--CCeEEEECCCcCCHHHHHHHHHHHc
Confidence 4689999988887433222 2689999999999999999998875
No 156
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.79 E-value=0.024 Score=54.43 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|+|.|++|+||||+++.|++.+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998764
No 157
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.73 E-value=0.12 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.059 Sum_probs=21.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
..++|.|++|+|||.++-.+....
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 459999999999999998887765
No 158
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.61 E-value=0.033 Score=52.45 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=20.0
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.|++|+||||+++.| ..+.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC
Confidence 4789999999999999999 5553
No 159
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.61 E-value=0.029 Score=54.86 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=23.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
...|+|.|++|+||||+++.|+..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998765
No 160
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.57 E-value=0.042 Score=69.99 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=20.3
Q ss_pred EEEECCCCcHHHHHHHHHHhhC
Q 004256 119 IAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
+||+||||||||++|++++...
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHh
Confidence 9999999999999999998754
No 161
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.50 E-value=0.034 Score=53.24 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|+|.|++|+||||+++.|++.+.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998764
No 162
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.46 E-value=0.029 Score=54.88 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=22.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|+|.|++|+||||+++.|+..+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999998764
No 163
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.45 E-value=0.03 Score=53.79 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.7
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|++|+||||+|+.|++.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998754
No 164
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.44 E-value=0.039 Score=53.08 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=22.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-+.|.||+|+||||+++.|....+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999999875
No 165
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.42 E-value=0.032 Score=52.79 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|+|.|.+||||||+++.|++.+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998754
No 166
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.35 E-value=0.033 Score=52.72 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.9
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|++|+||||+++.|++.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 167
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.34 E-value=0.039 Score=54.56 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=21.5
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|++|+||||+++.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988764
No 168
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.31 E-value=0.03 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
.-++|.|++|+||||+++.|+..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999986
No 169
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.31 E-value=0.089 Score=51.40 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=21.2
Q ss_pred CeEeccccccCCHHHHHHHHHHHHcCc
Q 004256 226 GVLYIDEINLLDEGISNLLLNVLTEGV 252 (765)
Q Consensus 226 GiL~lDEi~~L~~~~q~~Ll~~l~~~~ 252 (765)
-+|+|||++.++++....|..+.+.+.
T Consensus 83 dvViIDEaqfl~~~~v~~l~~l~~~~~ 109 (191)
T 1xx6_A 83 EVIAIDEVQFFDDEIVEIVNKIAESGR 109 (191)
T ss_dssp SEEEECSGGGSCTHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 599999999998888777666666543
No 170
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.30 E-value=0.031 Score=53.69 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=22.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|+|.|++|+||||+++.|++.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999998654
No 171
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.30 E-value=0.04 Score=53.75 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-+.|.||+|+||||+++.|..+.+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3488999999999999999999876
No 172
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.29 E-value=0.031 Score=54.68 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..-|.|.|++|+||||+++.|+..++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45588999999999999999998764
No 173
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.27 E-value=0.033 Score=53.30 Aligned_cols=25 Identities=44% Similarity=0.441 Sum_probs=18.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|+|.|.+|+||||+++.|++.+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3589999999999999999998765
No 174
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.21 E-value=0.046 Score=52.72 Aligned_cols=23 Identities=43% Similarity=0.426 Sum_probs=21.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
..|+|+|++||||||+++.|++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999998
No 175
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.19 E-value=0.05 Score=52.95 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=22.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.+|+|.||+|+||+||++.|....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5799999999999999999988776
No 176
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.16 E-value=0.03 Score=53.85 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.8
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|++|+||||+++.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999765
No 177
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.12 E-value=0.036 Score=56.69 Aligned_cols=24 Identities=25% Similarity=0.032 Sum_probs=21.5
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.|++||||||+|+.|+..++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 478999999999999999998764
No 178
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.12 E-value=0.035 Score=54.38 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..-|+|.|++|+||||+++.|+..+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 34589999999999999999998764
No 179
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.06 E-value=0.033 Score=53.70 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|+|.|++|+||||+++.|++.+.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998654
No 180
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.05 E-value=0.047 Score=53.60 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=22.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|+|.|++|+||||+++.|...++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4589999999999999999999875
No 181
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.03 E-value=0.038 Score=53.03 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.4
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|++|+||||+++.|++.+.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999997653
No 182
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.98 E-value=0.04 Score=53.06 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=21.5
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.|.+|+||||+++.|++.+.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998654
No 183
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.97 E-value=0.047 Score=52.71 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.9
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.+.|.||+|+||||+++.|..++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999874
No 184
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.96 E-value=0.045 Score=52.02 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..++|.|++|+||||+++.|+..+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 3589999999999999999998653
No 185
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.91 E-value=0.04 Score=54.38 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.2
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|++|+||||+|+.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987654
No 186
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.85 E-value=0.042 Score=53.76 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=22.0
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.|++|+||||+++.|++.+.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999999765
No 187
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.83 E-value=0.043 Score=53.61 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.7
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|++|+||||+++.|++.+.
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999998654
No 188
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.80 E-value=0.044 Score=51.63 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=21.6
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|.+|+||||+++.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998654
No 189
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.60 E-value=0.065 Score=52.83 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=23.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..-+.|.||+|+||||+++.|...++
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999999876
No 190
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.60 E-value=0.047 Score=53.02 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.8
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|.+|+||||+++.|++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 478999999999999999999765
No 191
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.60 E-value=0.053 Score=52.90 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=22.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
.-+.|.|++|+||||+++.|...+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 458999999999999999999987
No 192
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.53 E-value=0.044 Score=53.10 Aligned_cols=25 Identities=24% Similarity=0.146 Sum_probs=22.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|+|.|++|+||||+++.|++.+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999998764
No 193
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.53 E-value=0.045 Score=52.92 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=22.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|+|.|++|+||||+++.|++.+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999998764
No 194
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.42 E-value=0.067 Score=51.23 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=23.3
Q ss_pred cCCCCcEEEECCCCcHHHHHHHHHHhh
Q 004256 113 DREIGGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 113 ~~~~~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
.-...+|||.|++|+||||+|..+...
T Consensus 13 ~v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 13 VIDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred EECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 335678999999999999999999874
No 195
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.40 E-value=0.059 Score=52.05 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=22.1
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.+.|.||+|+||||+++.|..+++
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999999876
No 196
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.39 E-value=0.052 Score=53.89 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=22.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|.|.|++|+||||+++.|+..+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999998653
No 197
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.37 E-value=0.047 Score=52.44 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=21.6
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.|++|+||||+++.|++.+.
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998654
No 198
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.35 E-value=0.36 Score=47.85 Aligned_cols=27 Identities=26% Similarity=0.533 Sum_probs=23.5
Q ss_pred CeEeccccccCCHHHHHHHHHHHHcCc
Q 004256 226 GVLYIDEINLLDEGISNLLLNVLTEGV 252 (765)
Q Consensus 226 GiL~lDEi~~L~~~~q~~Ll~~l~~~~ 252 (765)
-+++|||+.-|++++.+.|..+.+.|.
T Consensus 103 dvV~IDEaQFf~~~~v~~l~~la~~gi 129 (219)
T 3e2i_A 103 DVIGIDEVQFFDDEIVSIVEKLSADGH 129 (219)
T ss_dssp SEEEECCGGGSCTHHHHHHHHHHHTTC
T ss_pred CEEEEechhcCCHHHHHHHHHHHHCCC
Confidence 499999999999999999888886665
No 199
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.33 E-value=0.058 Score=53.83 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=22.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|+|.|++|+||||+++.|++.+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4599999999999999999998764
No 200
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.31 E-value=0.055 Score=53.71 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=22.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|+|.|++|+||||+++.|++.+.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4589999999999999999998764
No 201
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.29 E-value=0.055 Score=56.43 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.7
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.|++|+||||+++.|...++
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 202
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.25 E-value=0.068 Score=52.14 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.7
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.|++|+||||+++.|++.+.
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998764
No 203
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.13 E-value=0.053 Score=55.28 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=22.1
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|+||+||||+++.|+..++
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999999875
No 204
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.10 E-value=0.067 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.2
Q ss_pred cEEEECCCCcHHHHHHHHHHhhC
Q 004256 118 GIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
-++|.|++|+||||+++.|+...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 37899999999999999998744
No 205
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.02 E-value=0.076 Score=54.02 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.9
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|.|.|++|+||||+|+.|+..+.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999999999765
No 206
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.96 E-value=0.051 Score=53.54 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..-|.|.|++|+|||||++.|..+++
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999875
No 207
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.93 E-value=0.076 Score=51.65 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|.|.|++|+||||+++.|++.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~ 29 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIP 29 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHC
Confidence 3589999999999999999999873
No 208
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.85 E-value=0.063 Score=51.85 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.7
Q ss_pred EEEECCCCcHHHHHHHHHHhhC
Q 004256 119 IAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
|.|.|++|+||||+++.|++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999976
No 209
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.85 E-value=0.26 Score=48.87 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=20.9
Q ss_pred CeEeccccccCCHHHHHHHHHHHHcCc
Q 004256 226 GVLYIDEINLLDEGISNLLLNVLTEGV 252 (765)
Q Consensus 226 GiL~lDEi~~L~~~~q~~Ll~~l~~~~ 252 (765)
-+++|||++-+++++++.|..+.+.+.
T Consensus 103 dvViIDEaQF~~~~~V~~l~~l~~~~~ 129 (214)
T 2j9r_A 103 DVIAIDEVQFFDGDIVEVVQVLANRGY 129 (214)
T ss_dssp CEEEECCGGGSCTTHHHHHHHHHHTTC
T ss_pred CEEEEECcccCCHHHHHHHHHHhhCCC
Confidence 599999999999888866666555543
No 210
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.83 E-value=0.068 Score=53.07 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=22.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|+|.|++|+||||+++.|++.+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998765
No 211
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.73 E-value=0.085 Score=51.87 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-+.|.||+|+||||+++.|..+++
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999999886
No 212
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.71 E-value=0.069 Score=54.02 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=21.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
.-|+|.|++|+||||+++.|++.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999999554
No 213
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.70 E-value=0.073 Score=51.20 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|+|.|.+|+||||+++.|+..+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999998764
No 214
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.70 E-value=0.075 Score=52.01 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.6
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
...+.|.||+|+||||+++.|..+.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35689999999999999999998765
No 215
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.65 E-value=0.071 Score=54.03 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|+|.|++|+||||+|+.|++.++
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999987654
No 216
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.63 E-value=0.061 Score=52.70 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=22.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|+|.|.+|+||||+++.|++.+.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999998754
No 217
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.63 E-value=0.071 Score=52.88 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=22.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|+|.|++|+||||+++.|++.+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999998764
No 218
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.55 E-value=0.074 Score=53.38 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=22.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|+|.|++|+||||+++.|++.+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999998764
No 219
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.51 E-value=0.1 Score=52.04 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=23.3
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..-+.|.||+|+|||||.+.|....+
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34588999999999999999999886
No 220
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.47 E-value=0.085 Score=50.69 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=21.0
Q ss_pred cEEEECCCCcHHHHHHHHHHhhC
Q 004256 118 GIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
-|.|.|.+|+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999875
No 221
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.42 E-value=0.15 Score=58.61 Aligned_cols=46 Identities=22% Similarity=0.220 Sum_probs=34.7
Q ss_pred CCCceeechHHHHHHHHhhh--cCCCCcEEEECCCCcHHHHHHHHHHh
Q 004256 93 PLAAVVGQDAIKTALLLGAI--DREIGGIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 93 ~f~~ivG~~~~~~aL~l~~~--~~~~~~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
+...+||.+..+..|.-... .....-|+|+|+.|+|||+||+.++.
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 44679999998888833222 22344599999999999999998864
No 222
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.41 E-value=0.077 Score=52.92 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.4
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|++|+||||+++.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998754
No 223
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.35 E-value=0.1 Score=49.22 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..-+.|.||.|+|||||.|.|..++|
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 34588999999999999999999885
No 224
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.32 E-value=0.074 Score=52.17 Aligned_cols=28 Identities=25% Similarity=0.106 Sum_probs=24.3
Q ss_pred CCCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 114 ~~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.....|+|.|++|+|||++|..|++...
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3456799999999999999999998765
No 225
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.31 E-value=0.084 Score=51.74 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.8
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|.|.|++|+||||+++.|...++
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTST
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 488999999999999999998764
No 226
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.31 E-value=0.082 Score=52.30 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=21.0
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|+|.||||+||+|.|+.|++.+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78999999999999999998764
No 227
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.30 E-value=0.083 Score=51.54 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.9
Q ss_pred cEEEECCCCcHHHHHHHHHHh
Q 004256 118 GIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
.|.|.|++|+||||+++.|+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 488999999999999999998
No 228
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.29 E-value=0.073 Score=52.58 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=21.4
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|++|+||||+++.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998653
No 229
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.28 E-value=0.11 Score=51.53 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.3
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..-+.|.||+|+||||+++.|..+.|
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45689999999999999999999875
No 230
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.25 E-value=0.12 Score=50.66 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=23.1
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
...+.|.||+|+|||||++.|....+
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34589999999999999999998876
No 231
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.25 E-value=0.066 Score=52.55 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|.|.|++|+||||+++.|..+++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3488999999999999999999764
No 232
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.21 E-value=0.072 Score=52.26 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|+|.|.+|+||||+++.|++.+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999998754
No 233
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.16 E-value=0.09 Score=51.42 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=19.5
Q ss_pred cEEEECCCCcHHHHHHHHHHh
Q 004256 118 GIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
-|.|.|++|+||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 234
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.16 E-value=0.085 Score=50.38 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
..|.|.|.+|+||||+++.|+..+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999876
No 235
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.12 E-value=0.091 Score=50.06 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=17.6
Q ss_pred CcEEEECCCCcHHHHHHHHH
Q 004256 117 GGIAISGRRGTAKTVMARGL 136 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l 136 (765)
.-+.|.|++|+||||+++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 34889999999999999974
No 236
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.08 E-value=0.088 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.6
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|.|.|++|+||||+++.|+..++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 588999999999999999998654
No 237
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.00 E-value=0.091 Score=52.44 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=21.3
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.||||+||+|.|+.|++.+.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 378899999999999999998764
No 238
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.96 E-value=0.1 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.1
Q ss_pred cEEEECCCCcHHHHHHHHHHhhC
Q 004256 118 GIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
-|+|.|.+|+||||+|+.|+..+
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999874
No 239
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.81 E-value=0.12 Score=52.67 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.8
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..-|.|.|++|+||||+++.|++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34689999999999999999997765
No 240
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.47 E-value=0.13 Score=54.49 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|+|.|++|+|||++++.|++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999999875
No 241
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.41 E-value=0.13 Score=49.19 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=23.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.+-.+|+||.|+|||+++++|.-++.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 34688999999999999999998875
No 242
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.37 E-value=0.11 Score=51.27 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=22.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..-|+|.|++|+||||+++.|+..++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34588999999999999999998764
No 243
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.30 E-value=0.12 Score=50.21 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=21.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
..|.|.|++|+||||+++.|++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 34899999999999999999986
No 244
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.26 E-value=0.12 Score=52.22 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=22.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|.|.|++|+||||+++.|+..+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999998764
No 245
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.10 E-value=0.15 Score=55.33 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=22.8
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
....++|.|++|+||||+++.|+..+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34579999999999999999999864
No 246
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.09 E-value=0.13 Score=50.91 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-+.|.||+|+||||+++.|+....
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3499999999999999999998543
No 247
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.08 E-value=0.13 Score=52.39 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=23.4
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
...|.|.|++|+||||+++.|+..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999999765
No 248
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.07 E-value=0.11 Score=54.75 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
..++|+||||||||+||..++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 34799999999999999999875
No 249
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.89 E-value=0.11 Score=52.02 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=15.4
Q ss_pred CcEEEECCCCcHHHHHHHHHH-hhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLH-AILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~-~~l~ 141 (765)
.-+.|.||+|+||||+++.|. .+.+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 358899999999999999999 8765
No 250
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.88 E-value=0.14 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHh
Q 004256 116 IGGIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
..-+.|.||+|+|||||++.|..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 34599999999999999999983
No 251
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.83 E-value=0.22 Score=53.36 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.+|+|.|++|+||||+++.|+..+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4599999999999999999998764
No 252
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.79 E-value=0.14 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=20.8
Q ss_pred cEEEECCCCcHHHHHHHHHHhhC
Q 004256 118 GIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
-|+|.|+||+||||+++.|++.+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999854
No 253
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.69 E-value=0.16 Score=51.28 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=23.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.+.|..+.+.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 345899999999999999999998764
No 254
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.63 E-value=0.16 Score=54.09 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=22.4
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.||+|+|||+|+..|++.++
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCC
Confidence 589999999999999999999876
No 255
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=89.63 E-value=0.8 Score=52.03 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=41.2
Q ss_pred eEeccccccC----CHHHHHHHHHHHHcCceEEEeCCeeEEeeCceEE-EEeecCCCCCcchHHHhhhhcceeecC
Q 004256 227 VLYIDEINLL----DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLL-IATYNPEEGVVREHLLDRIAINLSADL 297 (765)
Q Consensus 227 iL~lDEi~~L----~~~~q~~Ll~~l~~~~~~v~r~G~~~~~p~~~~l-Iat~N~~eg~l~~~L~dRf~~~v~i~~ 297 (765)
+|+|||+..| +..+...|.+++..|. . ..+.+ ++|.+|.-..++..+..-|+..+.+.+
T Consensus 346 vvVIDE~~~L~~~~~~~~~~~L~~Iar~GR----a--------~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv 409 (574)
T 2iut_A 346 VVVVDEFADMMMIVGKKVEELIARIAQKAR----A--------AGIHLILATQRPSVDVITGLIKANIPTRIAFQV 409 (574)
T ss_dssp EEEESCCTTHHHHTCHHHHHHHHHHHHHCT----T--------TTEEEEEEESCCCTTTSCHHHHHTCCEEEEECC
T ss_pred EEEEeCHHHHhhhhhHHHHHHHHHHHHHHh----h--------CCeEEEEEecCcccccccHHHHhhhccEEEEEc
Confidence 7899999876 5567777888887775 1 23344 455555556788888888888776654
No 256
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.61 E-value=0.17 Score=49.99 Aligned_cols=24 Identities=33% Similarity=0.274 Sum_probs=21.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
.-++|.|++|+|||++++.++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998654
No 257
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.58 E-value=0.17 Score=52.00 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=23.5
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..+-++|.||+|+||||+.+.|..+.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 345699999999999999999998764
No 258
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.56 E-value=0.18 Score=52.98 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.2
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
...-+.|+||+|+|||||++.|..++
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44569999999999999999999886
No 259
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.55 E-value=0.072 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=21.1
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|.|.|++|+||||+++.|...+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998764
No 260
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.50 E-value=0.21 Score=48.74 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.6
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|.|.|++|+||||+++.|...++
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999998763
No 261
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.47 E-value=0.17 Score=51.19 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=23.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
.-+.|.||+|+|||||.+.|+.+.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 67889999999999999999998764
No 262
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.33 E-value=0.14 Score=51.71 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.6
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|.|.|+.|+||||+++.|..+++
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 488999999999999999999764
No 263
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.23 E-value=0.14 Score=51.28 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
.-+.|.||+|+|||||.+.|..+.+.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45889999999999999999988764
No 264
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.16 E-value=0.18 Score=49.11 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.6
Q ss_pred EEEECCCCcHHHHHHHHHHhhC
Q 004256 119 IAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
|.|+|.+||||||+++.|++.+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8899999999999999999874
No 265
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.10 E-value=0.24 Score=54.49 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=24.4
Q ss_pred CCCCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 114 REIGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 114 ~~~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
...+-++|.||+|+||||+.++|..+++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 34456899999999999999999988753
No 266
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.08 E-value=0.19 Score=53.51 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=22.3
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.|++|+|||++|+.|+..++
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 588999999999999999999876
No 267
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.95 E-value=0.17 Score=50.28 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=23.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.+.|..+.+.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345889999999999999999998764
No 268
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.95 E-value=0.19 Score=49.64 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.8
Q ss_pred cEEEECCCCcHHHHHHHHHHh
Q 004256 118 GIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
-|.|.|++|+||||+++.|+.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999988
No 269
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.86 E-value=0.22 Score=48.76 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=20.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHh
Q 004256 117 GGIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
.-++|.|++|+|||++++.++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4489999999999999999987
No 270
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.79 E-value=0.16 Score=53.59 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=22.0
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|.|.|++|+||||+++.|..+++
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhhcc
Confidence 488999999999999999999875
No 271
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.71 E-value=0.21 Score=52.51 Aligned_cols=24 Identities=29% Similarity=0.184 Sum_probs=21.8
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.||+|+|||+++..|++.++
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhCc
Confidence 478999999999999999999875
No 272
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.65 E-value=0.22 Score=52.33 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=22.1
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.||+|+|||+||..|++.++
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCccCHHHHHHHHHHhCC
Confidence 478999999999999999999876
No 273
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.53 E-value=0.19 Score=52.09 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=23.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.+.|..+.+.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 345899999999999999999998764
No 274
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.51 E-value=0.18 Score=51.50 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=23.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.+.|..+.+.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 345889999999999999999998764
No 275
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.51 E-value=0.18 Score=50.53 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|+|.|++|+||||+++.|++.+.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3488999999999999999999875
No 276
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.42 E-value=0.22 Score=51.09 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.5
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.+.|..+.+.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345889999999999999999998764
No 277
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.41 E-value=0.19 Score=51.10 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.8
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.+.|..+.+.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345889999999999999999998764
No 278
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.41 E-value=0.22 Score=49.66 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=21.1
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhh
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
..-++|.|++|+|||++++.|+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 345899999999999999999874
No 279
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.34 E-value=0.18 Score=50.91 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=23.6
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.+.|..+.+.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345899999999999999999988753
No 280
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.32 E-value=0.23 Score=48.31 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.8
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.+.|.|++|+||||+++.|+.++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 588999999999999999998864
No 281
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=88.28 E-value=0.67 Score=37.89 Aligned_cols=55 Identities=9% Similarity=-0.019 Sum_probs=47.7
Q ss_pred CCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC
Q 004256 344 KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (765)
Q Consensus 344 ~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~h 405 (765)
+++.++.++...+.+.|..+ ...+...|..+|.-+++.+|+.+||..|++.+|.+
T Consensus 19 p~~~is~~A~~~i~~~~~~F-------i~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~k 73 (76)
T 3b0c_W 19 PHLRLAANTDLLVHLSFLLF-------LHRLAEEARTNAFENKSKIIKPEHTIAAAKVILKK 73 (76)
T ss_dssp TTCEECTTHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 37899999999998888776 55678888899999999999999999999988753
No 282
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.22 E-value=0.2 Score=50.68 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=23.6
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.+.|..+.+.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 345889999999999999999998764
No 283
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=88.18 E-value=0.27 Score=52.92 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.8
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
...+.|.|++|+|||||++.|+.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345999999999999999999998763
No 284
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.10 E-value=0.21 Score=50.60 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=23.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.+.|..+.+.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFYQP 54 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345899999999999999999998764
No 285
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.05 E-value=0.2 Score=51.62 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=23.6
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||++.|..+.+.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 345889999999999999999998764
No 286
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.03 E-value=0.2 Score=52.30 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.9
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|.|.|++|+||||+++.|...+.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 388999999999999999999875
No 287
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.97 E-value=0.2 Score=53.90 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=24.9
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
....++|.|++|+||||++++|..+.+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4567999999999999999999998764
No 288
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.91 E-value=0.23 Score=49.81 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.8
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||.|+|||||.+.|..+.+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 445889999999999999999998764
No 289
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.89 E-value=0.25 Score=50.74 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=23.6
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.+.|..+.+.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 345889999999999999999998764
No 290
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.82 E-value=0.25 Score=50.99 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.8
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.|++|+|||||.+.|..+.+.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345889999999999999999998764
No 291
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.79 E-value=0.24 Score=50.76 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=23.8
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.+.|..+.+.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 72 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYDA 72 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 456999999999999999999998763
No 292
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=87.77 E-value=0.22 Score=52.78 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.5
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|.|.|++|+||||+++.|..++.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 88999999999999999999875
No 293
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.76 E-value=0.22 Score=51.61 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.+.|..+++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 345889999999999999999998764
No 294
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.74 E-value=0.23 Score=50.61 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=23.6
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.+.|..+++.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 345889999999999999999998764
No 295
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.67 E-value=0.28 Score=48.23 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.9
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|.|.|++|+||||+++.|+..+.
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999999764
No 296
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.61 E-value=0.21 Score=47.79 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|.|.|++|+||||+++.|..++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999998865
No 297
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.61 E-value=0.19 Score=49.63 Aligned_cols=24 Identities=21% Similarity=0.050 Sum_probs=21.8
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhh
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
..-+.|.||+|+|||||.+.|+.+
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 455889999999999999999988
No 298
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=87.58 E-value=0.35 Score=56.34 Aligned_cols=37 Identities=24% Similarity=0.200 Sum_probs=23.8
Q ss_pred hHHHHHHHHhhhcCCCCcEEEECCCCcHHHHH-HHHHHhh
Q 004256 101 DAIKTALLLGAIDREIGGIAISGRRGTAKTVM-ARGLHAI 139 (765)
Q Consensus 101 ~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~l-Ar~l~~~ 139 (765)
+..+.|+..+.. ...-.||.||||||||++ +..|..+
T Consensus 192 ~~Q~~AV~~al~--~~~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 192 TSQKEAVLFALS--QKELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp HHHHHHHHHHHH--CSSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 445666654433 234689999999999965 4444444
No 299
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.55 E-value=0.27 Score=50.27 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.6
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.+.|..+.+.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~p 67 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIKP 67 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345889999999999999999998764
No 300
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.42 E-value=0.27 Score=50.52 Aligned_cols=27 Identities=15% Similarity=0.388 Sum_probs=23.6
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.|++|+|||||.+.|..+.+.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 345889999999999999999998764
No 301
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=87.39 E-value=1.3 Score=35.31 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 004256 347 AIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELV 402 (765)
Q Consensus 347 ~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lv 402 (765)
++++.+...|.+++.+. ...+++-|..+|.-.|+.+|+.+||+.|++..
T Consensus 18 ~~~~~v~~~L~e~~~ry-------~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 18 EYEPRVVNQLLEFTFRY-------VTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp CBCTHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 78888999998887554 67899999999999999999999999998864
No 302
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.32 E-value=0.21 Score=52.45 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.7
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|.|.|++|+||||+++.|..+++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999999764
No 303
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.29 E-value=0.25 Score=55.79 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=24.7
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
....++|.|++|+||||++++|..+++.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 3456999999999999999999998864
No 304
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=87.28 E-value=0.24 Score=51.28 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=20.0
Q ss_pred cEEEECCCCcHHHHHHHHHHhh
Q 004256 118 GIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-|.|.|++|+||||+++.|+.+
T Consensus 77 iI~I~G~~GSGKSTva~~La~l 98 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKNL 98 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 3899999999999999999964
No 305
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.17 E-value=0.26 Score=50.23 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.+.|..+.+.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 345889999999999999999998764
No 306
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=87.11 E-value=0.23 Score=52.85 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=24.4
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
...++|.|++|+||||++++|..+.+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 467999999999999999999998764
No 307
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=86.92 E-value=0.19 Score=55.39 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.4
Q ss_pred CCeEeccccccCCHHHHHHHHHHHH
Q 004256 225 RGVLYIDEINLLDEGISNLLLNVLT 249 (765)
Q Consensus 225 ~GiL~lDEi~~L~~~~q~~Ll~~l~ 249 (765)
..+|+|||+..++......|+..+.
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~ 259 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSL 259 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTT
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCC
Confidence 4699999999999999888887653
No 308
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.80 E-value=0.25 Score=54.25 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=20.7
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
|+|.|++|+||||+|+.|+..+.
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGGT
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 88999999999999999987653
No 309
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=86.69 E-value=0.31 Score=52.71 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=23.5
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..+.++|.|++|+||||+++.|..+.+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 345699999999999999999998765
No 310
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=86.66 E-value=0.53 Score=45.89 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=20.2
Q ss_pred cEEEECCCCcHHH-HHHHHHHhhC
Q 004256 118 GIAISGRRGTAKT-VMARGLHAIL 140 (765)
Q Consensus 118 ~VLi~Ge~GTGKt-~lAr~l~~~l 140 (765)
=.+|+|+.|+||| .|.+++++..
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~ 45 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQ 45 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 3889999999999 8999998864
No 311
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=86.60 E-value=0.4 Score=51.32 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=23.5
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.|.|+.+.+.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCCC
Confidence 345889999999999999999998763
No 312
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.56 E-value=0.34 Score=50.86 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=24.3
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
...-+.|.||+|+|||||++.|..+.+.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 3456999999999999999999998764
No 313
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=86.52 E-value=0.29 Score=52.60 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=23.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
.-+.|.||+|+|||||.|.|+.+.+.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCC
Confidence 45889999999999999999998763
No 314
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=86.31 E-value=0.32 Score=52.62 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=23.6
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.|.|+.+.+.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCCC
Confidence 345889999999999999999998763
No 315
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=86.28 E-value=0.32 Score=52.17 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.5
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.|.|+.+.+.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 345889999999999999999998763
No 316
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.25 E-value=0.35 Score=48.45 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|.|.|++|+||||+++.|+..+.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998653
No 317
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.20 E-value=0.31 Score=49.56 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.6
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhh
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
..-+.|.||+|+|||||.+.|..+
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999997
No 318
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=86.01 E-value=0.31 Score=50.22 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.9
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.+.|.||+|+|||||.+.|..+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999998764
No 319
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.92 E-value=0.32 Score=50.09 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=22.2
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
...-++|+|++|+|||||++.++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999998753
No 320
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.89 E-value=0.38 Score=49.42 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=22.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
..-+.|.||+|+|||||.+.|..+.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999974
No 321
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=85.74 E-value=0.33 Score=50.42 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=22.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-++|.|++|+||||+++.|+..+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999998754
No 322
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.64 E-value=0.34 Score=48.27 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=19.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
.-++|.|++|+|||+++..++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999998877654
No 323
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=85.51 E-value=0.43 Score=51.33 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.4
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.|.|+.+.+.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCC
Confidence 345889999999999999999998763
No 324
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=85.46 E-value=0.32 Score=49.93 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=22.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..-+.|.||+|+|||||.+.|+.+.|
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~p 55 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLLP 55 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44688999999999999999998873
No 325
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=85.42 E-value=0.43 Score=51.27 Aligned_cols=27 Identities=30% Similarity=0.257 Sum_probs=23.5
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.|.|+.+.+.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCCC
Confidence 345889999999999999999998763
No 326
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=85.38 E-value=0.38 Score=52.02 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.5
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.|.|+.+.+.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLEEP 55 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCCC
Confidence 345889999999999999999998763
No 327
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=85.30 E-value=0.44 Score=51.42 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=23.6
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.|.|+.+.+.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 345889999999999999999998764
No 328
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=85.22 E-value=0.4 Score=50.31 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|.|.|++|+||||+++.|+.++.
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3488999999999999999998865
No 329
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.13 E-value=0.36 Score=50.34 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.6
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.|+.|+|||||.+.|..+.+.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 345889999999999999999998763
No 330
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.13 E-value=0.37 Score=45.95 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=21.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-+.|.|++|+||||++..|...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3488999999999999999988764
No 331
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=84.93 E-value=0.41 Score=51.34 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.5
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.|.|+.+.+.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 345889999999999999999998763
No 332
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=84.85 E-value=0.21 Score=52.12 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=18.4
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|.|.|++|+||||+++.|.+.++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 388999999999999999998654
No 333
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=84.70 E-value=0.41 Score=46.03 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=21.4
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.|+|.|++|+|||||.+.+.....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999987653
No 334
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=84.58 E-value=0.46 Score=45.82 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=21.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
-.|+|.|++|+|||+|.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998764
No 335
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=84.56 E-value=1.3 Score=35.56 Aligned_cols=50 Identities=24% Similarity=0.233 Sum_probs=44.7
Q ss_pred CCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 344 KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 344 ~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
+..++++++...+.+.+..+ ...+++-|..+|.-.||.+|+.+||..|++
T Consensus 20 g~~ris~~a~~~l~e~~~~~-------~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 20 GAERVSEQAAKVLAEYLEEY-------AIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp TCSEECHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred CcceeCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 66799999999999888776 678999999999999999999999998874
No 336
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=84.49 E-value=0.46 Score=47.69 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=22.2
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|.|.|..|+||||+++.|++.+.
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999999885
No 337
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=84.38 E-value=0.48 Score=50.99 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.5
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+|||||.|.|..+.+.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCCCC
Confidence 345889999999999999999998763
No 338
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=84.33 E-value=0.41 Score=45.83 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=21.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-+.|.|++|+||||+++.|...+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 4588999999999999999987653
No 339
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=84.28 E-value=0.47 Score=49.74 Aligned_cols=24 Identities=33% Similarity=0.256 Sum_probs=21.7
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-+.|.|++|+||||+++.|+.++.
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999998864
No 340
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=84.22 E-value=0.36 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.8
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.||+|+|||+|+..|+..++
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEEECcchhhHHHHHHHHHHHCC
Confidence 478999999999999999999875
No 341
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=84.20 E-value=0.51 Score=43.19 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.1
Q ss_pred cEEEECCCCcHHHHHHHHHHhh
Q 004256 118 GIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
.|+|.|++|+|||++++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 342
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=84.12 E-value=0.44 Score=51.03 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
.-+.|+||+|+|||+|++.++...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 349999999999999999999876
No 343
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=84.07 E-value=0.37 Score=54.86 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=23.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
...+.|.|++|+||||+++.|+..+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 34589999999999999999999875
No 344
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=84.04 E-value=0.29 Score=49.95 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|+|.|..|+||||+++.|++.+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3489999999999999999999875
No 345
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=84.03 E-value=0.43 Score=51.21 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=21.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
.-++|+||+|+|||+|+..++...
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 349999999999999999998764
No 346
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=83.97 E-value=0.45 Score=45.85 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=19.4
Q ss_pred EEEECCCCcHHHHHHHHHHhh
Q 004256 119 IAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
+||+|++|+|||++|+.++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 799999999999999999865
No 347
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=83.84 E-value=0.53 Score=51.84 Aligned_cols=18 Identities=17% Similarity=0.008 Sum_probs=15.8
Q ss_pred CCcEEEECCCCcHHHHHH
Q 004256 116 IGGIAISGRRGTAKTVMA 133 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lA 133 (765)
...+|+.|++|+|||.++
T Consensus 2 g~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CCEEEEECCTTSCTTTTH
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 357999999999999975
No 348
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=83.79 E-value=0.52 Score=46.16 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=22.3
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|.|.|+.|+|||++++.|++.+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999876
No 349
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=83.77 E-value=0.53 Score=43.68 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
+-.+|+||.|+|||++..+|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999998654
No 350
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=83.58 E-value=0.51 Score=44.90 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.8
Q ss_pred cEEEECCCCcHHHHHHHHHHhh
Q 004256 118 GIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
.|+|.|++|+|||+|.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998763
No 351
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=83.47 E-value=0.56 Score=43.20 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=20.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
No 352
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=83.26 E-value=0.48 Score=52.69 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=23.8
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
...-|.|.|++|+|||||+|.|..+..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 345699999999999999999999874
No 353
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=83.19 E-value=0.39 Score=50.47 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.6
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhh
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
...+|||.|++|+|||++|-.+...
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4567999999999999999888764
No 354
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=83.17 E-value=0.56 Score=49.76 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.7
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-+.|.|++|+||||+++.|+.++.
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998764
No 355
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=83.09 E-value=0.49 Score=46.88 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.7
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|.|.|++|+||||+++.|++.+.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 488899999999999999998775
No 356
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=82.94 E-value=0.58 Score=43.57 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
..|+|.|++|+|||+|.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999764
No 357
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=82.92 E-value=0.62 Score=42.70 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=20.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999988753
No 358
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=82.78 E-value=0.67 Score=44.02 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=21.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-.|+|.|.+|+|||+|++.+.....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4599999999999999999987654
No 359
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=82.55 E-value=0.5 Score=50.75 Aligned_cols=23 Identities=35% Similarity=0.315 Sum_probs=21.4
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
++|.|++|+||||+++.|+.++.
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHhhcc
Confidence 88999999999999999998864
No 360
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=82.49 E-value=0.63 Score=43.26 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|.+.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 36999999999999999998753
No 361
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=82.41 E-value=0.52 Score=51.21 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=22.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..-+.|.||+|+|||||.|.|+.+.+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCEEEEECCCCChHHHHHHHHhCCCC
Confidence 45599999999999999999998764
No 362
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=82.36 E-value=0.66 Score=42.56 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
..|+|.|++|+|||+|.+.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998764
No 363
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=82.28 E-value=0.59 Score=42.72 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=20.0
Q ss_pred cEEEECCCCcHHHHHHHHHHhh
Q 004256 118 GIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
.|++.|++|+|||++++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 364
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.25 E-value=0.67 Score=42.69 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=19.9
Q ss_pred cEEEECCCCcHHHHHHHHHHhh
Q 004256 118 GIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
.|+|.|++|+|||+|...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998754
No 365
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=82.23 E-value=0.68 Score=42.71 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=20.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|.+.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999764
No 366
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=82.07 E-value=0.87 Score=52.71 Aligned_cols=37 Identities=24% Similarity=0.088 Sum_probs=25.0
Q ss_pred hHHHHHHHHhhhcCCCCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 101 DAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 101 ~~~~~aL~l~~~~~~~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
+..+.++..+. ....++|.||||||||+++..+...+
T Consensus 183 ~~Q~~av~~~l---~~~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 183 HSQVYAVKTVL---QRPLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp HHHHHHHHHHH---TCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---cCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 33455553322 24578999999999999877766543
No 367
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=82.03 E-value=0.67 Score=46.15 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=18.3
Q ss_pred cEEEECCCCcHHHHHHHHHHh
Q 004256 118 GIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
-++|.|+||+|||++|-.++.
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 499999999999999987653
No 368
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=81.98 E-value=0.56 Score=49.23 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.2
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
++|.|++|+||||+++.|+..+.
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHHHHH
Confidence 88999999999999999998764
No 369
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=81.85 E-value=0.48 Score=47.45 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=18.8
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|.|.|++|+||||+++.|++.+.
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999998874
No 370
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=81.78 E-value=0.72 Score=43.01 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999754
No 371
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=81.78 E-value=0.56 Score=52.42 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.6
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-++|.|++|+||||+++.|+.++.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHhh
Confidence 388999999999999999998764
No 372
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=81.71 E-value=0.72 Score=42.62 Aligned_cols=23 Identities=13% Similarity=0.037 Sum_probs=20.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|.+.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999998754
No 373
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=81.62 E-value=0.72 Score=43.88 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
...|+|.|++|+|||++...+....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3569999999999999999998753
No 374
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.61 E-value=0.82 Score=44.58 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
...|+|.|++|+|||+|+..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998753
No 375
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=81.60 E-value=0.99 Score=49.40 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=23.6
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..+-+.|.|++|+|||||.+.|..+.+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCC
Confidence 345789999999999999999998765
No 376
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=81.60 E-value=0.7 Score=42.63 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHh
Q 004256 117 GGIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
-.|+|.|++|+|||+|...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999875
No 377
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=81.59 E-value=0.99 Score=51.30 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=30.7
Q ss_pred eechHHHHHHHHhhhc---CCCCcEEEECCCCcHHHHHHHHHHh
Q 004256 98 VGQDAIKTALLLGAID---REIGGIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 98 vG~~~~~~aL~l~~~~---~~~~~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
+|.+..+..|.-.... ....-|.|+|..|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 5999988877322221 1235589999999999999999996
No 378
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=81.53 E-value=0.96 Score=56.28 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=35.0
Q ss_pred CCCCceeechHHHHHHHHhh--hcCCCCcEEEECCCCcHHHHHHHHHHhh
Q 004256 92 FPLAAVVGQDAIKTALLLGA--IDREIGGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 92 ~~f~~ivG~~~~~~aL~l~~--~~~~~~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
.+...++|.+..+..|.-.. ......-|.|+|+.|+|||+||+.++..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 34466999999888883322 2233345889999999999999887653
No 379
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=81.48 E-value=0.74 Score=42.30 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=19.9
Q ss_pred cEEEECCCCcHHHHHHHHHHhh
Q 004256 118 GIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
.|+|.|.+|+|||+|.+.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999763
No 380
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=81.48 E-value=0.75 Score=42.98 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
..|+|.|++|+|||+|...+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999988764
No 381
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=81.46 E-value=0.64 Score=49.73 Aligned_cols=24 Identities=29% Similarity=0.163 Sum_probs=20.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
.-++|+|++|+|||+++..++...
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 449999999999999999988653
No 382
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=81.42 E-value=0.68 Score=42.82 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=19.2
Q ss_pred cEEEECCCCcHHHHHHHHHHh
Q 004256 118 GIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
.|+|.|++|+|||+|...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999864
No 383
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=81.42 E-value=0.57 Score=52.97 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.4
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.|.||+||||+|+.|++.+.
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998753
No 384
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=81.35 E-value=0.75 Score=42.33 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=20.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998763
No 385
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=81.35 E-value=2 Score=37.73 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=45.7
Q ss_pred CCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 004256 344 KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (765)
Q Consensus 344 ~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~l 401 (765)
+..++++++.+.+.+++..+ ...+.+-|.++|.-.||.+|+.+||..|++.
T Consensus 21 g~~rIS~~a~~~l~e~l~~f-------~~~v~~da~~~A~HA~RKTV~~eDV~lalrr 71 (111)
T 3b0c_T 21 VKTPVTRDAYKIVEKCSERY-------FKQISSDLEAYSQHAGRKTVEMADVELLMRR 71 (111)
T ss_dssp HCSCBCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 56899999999999888776 6779999999999999999999999999874
No 386
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=81.29 E-value=0.61 Score=42.98 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=18.8
Q ss_pred CcEEEECCCCcHHHHHHHHHH
Q 004256 117 GGIAISGRRGTAKTVMARGLH 137 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~ 137 (765)
-.|+|.|++|+|||+|.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 368999999999999999885
No 387
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=81.26 E-value=0.59 Score=50.97 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=18.4
Q ss_pred cEEEECCCCcHHHHHHHHHHh
Q 004256 118 GIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
-++|+||+|+|||+|++.|+-
T Consensus 180 i~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHH
Confidence 399999999999999997653
No 388
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=81.18 E-value=0.48 Score=47.28 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=20.2
Q ss_pred cEEEECCCCcHHHHHHHHHHhh
Q 004256 118 GIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-|.|.|+.|+||||+++.|...
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4889999999999999999887
No 389
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=81.06 E-value=0.69 Score=42.66 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999998753
No 390
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=80.99 E-value=0.97 Score=42.14 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=21.5
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhh
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
....|+|.|++|+|||+|...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456999999999999999998753
No 391
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=80.95 E-value=0.78 Score=43.33 Aligned_cols=23 Identities=17% Similarity=0.027 Sum_probs=20.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999863
No 392
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=80.88 E-value=0.8 Score=42.71 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|.+.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35999999999999999998754
No 393
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=80.85 E-value=0.75 Score=43.49 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
..|+|.|++|+|||+|.+.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999763
No 394
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=80.80 E-value=0.81 Score=42.02 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.6
Q ss_pred cEEEECCCCcHHHHHHHHHHhh
Q 004256 118 GIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
.|+|.|++|+|||+|...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999753
No 395
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=80.79 E-value=0.8 Score=42.62 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|.+|+|||+|.+.+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999764
No 396
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=80.77 E-value=0.79 Score=48.83 Aligned_cols=22 Identities=23% Similarity=0.107 Sum_probs=20.0
Q ss_pred cEEEECCCCcHHHHHHHHHHhh
Q 004256 118 GIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-++|+|++|+|||+++..++..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998875
No 397
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=80.73 E-value=1.5 Score=36.67 Aligned_cols=39 Identities=23% Similarity=0.116 Sum_probs=33.5
Q ss_pred CCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC
Q 004256 367 GHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (765)
Q Consensus 367 s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~h 405 (765)
|.-.+..+++.|.-.|..++...|+.+|+..|+..+.+.
T Consensus 46 SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 46 SGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 667778888999888988888899999999999987654
No 398
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=80.63 E-value=0.74 Score=42.96 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHh
Q 004256 117 GGIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
-.|+|.|++|+|||+|...+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999998854
No 399
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=80.54 E-value=0.64 Score=46.16 Aligned_cols=25 Identities=32% Similarity=0.158 Sum_probs=22.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|.|.|++|+||||+++.|++.+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4588999999999999999999876
No 400
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=80.41 E-value=2.2 Score=35.98 Aligned_cols=49 Identities=20% Similarity=0.097 Sum_probs=42.9
Q ss_pred CccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 345 DVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 345 nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
++.++++++..|++++... ...+.+-+..+|.-.||.+|+.+||..+++
T Consensus 30 g~~vs~~~i~aL~e~~~~~-------~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 30 DIKYTPRFINSLLELAYLQ-------LGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp CCCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred CceeCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 5899999999999998776 567888899999999999999999987653
No 401
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=80.40 E-value=0.61 Score=47.02 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=22.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|.|.|++|+||||+++.|++.+.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999998764
No 402
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=80.36 E-value=0.71 Score=48.70 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=21.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
.-++|+|++|+|||+++..++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHH
Confidence 449999999999999999998753
No 403
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=80.35 E-value=0.6 Score=49.07 Aligned_cols=25 Identities=28% Similarity=0.202 Sum_probs=22.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
..+|+|.|++|+|||++|..+....
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 4679999999999999999998753
No 404
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=80.35 E-value=0.61 Score=48.69 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=22.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-++|.|++|+||||++..|+..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999998764
No 405
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=80.13 E-value=0.88 Score=42.84 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999754
No 406
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=80.07 E-value=0.74 Score=43.33 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
..|+|.|++|+|||+|.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45999999999999999999864
No 407
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=80.02 E-value=0.89 Score=42.01 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.4
Q ss_pred CCcEEEECCCCcHHHHHHHHHHh
Q 004256 116 IGGIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
...|+|.|++|+|||+|...+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35699999999999999999965
No 408
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=79.99 E-value=0.88 Score=43.32 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|.+.+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45999999999999999998764
No 409
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=79.90 E-value=0.81 Score=42.70 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=20.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
..|+|.|.+|+|||+|.+.+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998764
No 410
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=79.88 E-value=3.7 Score=38.21 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=48.3
Q ss_pred CCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcC
Q 004256 344 KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (765)
Q Consensus 344 ~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~ 404 (765)
+..+++.++.+.+.+.+..+ ...+.+.|..+|.-.+|.+|+.+||..|++.-++
T Consensus 96 g~~RVS~~A~~~l~~~le~f-------~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~ 149 (154)
T 1f1e_A 96 GIERASSDAVDLYNKLICRA-------TEELGEKAAEYADEDGRKTVQGEDVEKAITYSMP 149 (154)
T ss_dssp TCCEECHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSG
T ss_pred CCccchHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCC
Confidence 67899999999998888776 6789999999999999999999999999998665
No 411
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=79.85 E-value=0.8 Score=42.64 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=20.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998753
No 412
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=79.79 E-value=0.9 Score=42.61 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
..|+|.|++|+|||+|.+.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999998763
No 413
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=79.75 E-value=0.91 Score=43.14 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=20.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|..++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 414
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=79.73 E-value=0.9 Score=43.06 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|.+|+|||+|+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 415
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=79.71 E-value=0.67 Score=42.25 Aligned_cols=39 Identities=8% Similarity=0.037 Sum_probs=28.8
Q ss_pred cccccchhHHHHHHhcCCCcccccCCCCccccCCCCccHHHHHHHHH
Q 004256 19 LSHLQQSCSVVSSLKLHPLLFSYSPPPFFKFRTRPKHHRFFHVRASS 65 (765)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~~~d~~~~p~~~~~~~~~~~~~~~~~~~~ 65 (765)
++.........++++.| +.||+.|||.... +...+++.+
T Consensus 93 lTa~~~~~~~~~~~~~G--a~~yl~KP~~~~~------L~~~i~~~l 131 (134)
T 3to5_A 93 ITAEAKREQIIEAAQAG--VNGYIVKPFTAAT------LKEKLDKIF 131 (134)
T ss_dssp EESSCCHHHHHHHHHTT--CCEEEESSCCHHH------HHHHHHHHC
T ss_pred EECCCCHHHHHHHHHCC--CCEEEECCCCHHH------HHHHHHHHH
Confidence 33445677889999999 9999999997543 555565543
No 416
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=79.60 E-value=0.92 Score=42.42 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=20.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
..|+|.|++|+|||+|.+.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999998754
No 417
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=79.41 E-value=0.78 Score=45.76 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=22.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-|.|.|.+|+||||+++.|++.+.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3488899999999999999998764
No 418
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=79.40 E-value=0.83 Score=43.22 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=20.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999998864
No 419
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=79.27 E-value=0.81 Score=44.76 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.+-.+|+|+.|+|||++..+|.-.+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35689999999999999999987653
No 420
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=79.25 E-value=0.69 Score=52.06 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=22.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..|+|.|.+|+||||++++|++.+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999876
No 421
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=79.20 E-value=0.98 Score=49.87 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=23.4
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..-+.|.|++|+|||||.+.|+.+..
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 45689999999999999999999875
No 422
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=79.15 E-value=0.97 Score=42.47 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=20.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|...+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999998854
No 423
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=79.13 E-value=0.72 Score=45.66 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.7
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|.|.|.+|+||||.++.|++.+.
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488899999999999999998874
No 424
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=79.02 E-value=0.96 Score=48.49 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=21.1
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
..-++|+|++|+|||++|..++...
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3459999999999999999888653
No 425
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=79.01 E-value=0.91 Score=48.50 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=23.5
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..-+.|.|++|+|||||.+.|..+..
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45699999999999999999999875
No 426
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=78.98 E-value=0.99 Score=42.14 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|...+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35999999999999999998764
No 427
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=78.91 E-value=0.76 Score=52.95 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.5
Q ss_pred cEEEECCCCcHHHHHHHHHHhhC
Q 004256 118 GIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
-|+|.|.+|+||||+|+.|++.+
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 49999999999999999999976
No 428
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=78.78 E-value=0.5 Score=45.78 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=19.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
..|.|.|++|+|||||.+.|...
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45999999999999999987643
No 429
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=78.72 E-value=1.5 Score=47.33 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=22.4
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
....++|+|++|+|||+|++.|+...
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34669999999999999999988764
No 430
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=78.69 E-value=8.4 Score=32.50 Aligned_cols=53 Identities=13% Similarity=0.041 Sum_probs=45.9
Q ss_pred cccCCccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 341 EYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 341 ~~~~nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
..|.+.+++.++...+.+.|..+ ...+...|..+|.-.+|.+|+.+||..|++
T Consensus 21 ~~~~~~~is~dA~~~l~~a~e~F-------i~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 21 AIPQTGKIAKDAKECVQECVSEF-------ISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp TSCTTCEECHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred hCCccceeCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 34667899999999998888776 566788888999999999999999999987
No 431
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=78.62 E-value=0.8 Score=48.14 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=20.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
.-++|+|++|+|||++|..++..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999998864
No 432
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=78.55 E-value=1 Score=42.20 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=20.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|.+|+|||+|.+.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998753
No 433
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=78.54 E-value=1.1 Score=48.48 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=23.1
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
...+++|.|++|+|||++++.+...+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998754
No 434
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=78.48 E-value=0.93 Score=42.68 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|.+.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998754
No 435
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=78.45 E-value=0.95 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
.-|+|.|.+|+||||+++.|+..+
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 459999999999999999999865
No 436
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=78.31 E-value=0.92 Score=45.45 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.7
Q ss_pred EEEECCCCcHHHHHHHHHHhhCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
+-|.|+||+||||+|+.|++.+.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred eeeECCCCCCHHHHHHHHHHHhC
Confidence 77999999999999999998653
No 437
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=78.28 E-value=1.8 Score=39.30 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=36.2
Q ss_pred cccchhHHHHHHhcCCCcccccCCCCccccCCCCccHHHHHHHHHHHHHHHHHHHHH
Q 004256 21 HLQQSCSVVSSLKLHPLLFSYSPPPFFKFRTRPKHHRFFHVRASSSNATLDSANGAV 77 (765)
Q Consensus 21 ~~~~~~~~~~~~~~g~~~~d~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (765)
.........++++.| +.+|+.||+.... +...+++++...++..+++.+
T Consensus 83 ~~~~~~~~~~~~~~g--~~~~l~kP~~~~~------L~~~i~~~~~~~~~~~~~~~~ 131 (155)
T 1qkk_A 83 GHGDIPMAVQAIQDG--AYDFIAKPFAADR------LVQSARRAEEKRRLVMENRSL 131 (155)
T ss_dssp CGGGHHHHHHHHHTT--CCEEEESSCCHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHhcC--CCeEEeCCCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 344566788999999 9999999987544 777888877766665554444
No 438
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=78.27 E-value=1.1 Score=42.62 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=20.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|...+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998764
No 439
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=78.26 E-value=3 Score=47.57 Aligned_cols=25 Identities=28% Similarity=0.117 Sum_probs=19.8
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhh
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
...++||.+++|+|||.++-.+...
T Consensus 197 ~~~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 197 GKKRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp TCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCceEEEecCCCChHHHHHHHHHH
Confidence 4467999999999999987665543
No 440
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=78.25 E-value=1.1 Score=42.71 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=19.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|++.+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999776653
No 441
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=78.22 E-value=0.82 Score=52.31 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.8
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|+|.|.+|+||||+|+.|.+.+.
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEeecCCCCCHHHHHHHHHHHhc
Confidence 489999999999999999998764
No 442
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=78.17 E-value=0.85 Score=43.40 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhh
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
...|+|.|++|+|||+|...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999998753
No 443
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=78.13 E-value=1.4 Score=52.60 Aligned_cols=25 Identities=32% Similarity=0.209 Sum_probs=20.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
...++|.|+||||||+++..+...+
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568999999999999887776543
No 444
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=78.11 E-value=1.1 Score=41.93 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=21.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhh
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
.-.|+|.|++|+|||+|.+.+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999998754
No 445
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=78.09 E-value=1.1 Score=43.02 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
..|+|.|++|+|||+|...+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999998753
No 446
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=78.07 E-value=0.87 Score=42.98 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.8
Q ss_pred cEEEECCCCcHHHHHHHHHHhh
Q 004256 118 GIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
.|+|.|++|+|||+|...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999998753
No 447
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=78.05 E-value=1.1 Score=43.06 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999998764
No 448
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=78.03 E-value=1.1 Score=42.48 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=20.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|.+|+|||+|...+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998753
No 449
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=77.92 E-value=0.78 Score=50.36 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=20.2
Q ss_pred EEEECCCCcHHHHHHHHHHhhC
Q 004256 119 IAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
+.|.|++|+|||||.+.|....
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCcc
Confidence 8999999999999999998763
No 450
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=77.90 E-value=1.2 Score=50.55 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=23.1
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..-+.|.||+|+|||||.+.|..+++
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34589999999999999999999875
No 451
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=77.89 E-value=1.1 Score=42.57 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|.+|+|||+|++.+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 35999999999999999888753
No 452
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=77.86 E-value=1.1 Score=42.53 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|.+.+...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999998864
No 453
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=77.75 E-value=1.1 Score=46.81 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=21.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-+.|.|++|+|||||.+.|. ...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 458899999999999999999 764
No 454
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=77.66 E-value=2.8 Score=36.79 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=43.1
Q ss_pred CccCCHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004256 345 DVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (765)
Q Consensus 345 nv~i~~~~l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~ 400 (765)
++.++++++..|++++... ...+.+-+..+|.-.||.+|+.+||..+++
T Consensus 45 ~~~vS~~ai~aL~El~~~~-------~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 45 EMQFSKQTIAAISELTFRQ-------CENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp TCCBCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 6889999999999998776 567888899999999999999999987654
No 455
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=77.65 E-value=1.2 Score=51.15 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=24.3
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
...-+.|.||+|+||||+++.|..+.+.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3456999999999999999999998764
No 456
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=77.59 E-value=1.2 Score=42.51 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=19.9
Q ss_pred cEEEECCCCcHHHHHHHHHHhh
Q 004256 118 GIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
.|+|.|++|+|||+|...+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999998764
No 457
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=77.54 E-value=0.93 Score=47.31 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=22.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-+.|.|++|+|||||.+.|..+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 4588999999999999999988764
No 458
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=77.54 E-value=1.1 Score=42.52 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
..|+|.|++|+|||+|...+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998764
No 459
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=77.50 E-value=1.2 Score=42.66 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhh
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
.-.|+|.|.+|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998764
No 460
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=77.49 E-value=1.1 Score=43.04 Aligned_cols=23 Identities=22% Similarity=0.036 Sum_probs=20.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999998753
No 461
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=77.44 E-value=0.9 Score=45.31 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.7
Q ss_pred cEEEECCCCcHHHHHHHHHHhhCC
Q 004256 118 GIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
-|.|.|++|||||++++.|++.+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998765
No 462
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=77.42 E-value=1.1 Score=47.17 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=20.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
.-++|.|+||+|||+++..++..
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 34999999999999999998764
No 463
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=77.40 E-value=1.2 Score=42.39 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=20.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|...+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999753
No 464
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=77.35 E-value=0.97 Score=42.25 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=20.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998764
No 465
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=77.32 E-value=6.9 Score=31.58 Aligned_cols=49 Identities=20% Similarity=0.085 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcC
Q 004256 353 LKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (765)
Q Consensus 353 l~~l~~~a~~~g~~s~Ra~i~llr~A~a~A~l~gr~~Vt~edv~~A~~lvl~ 404 (765)
++.|+..+ ...|......+++.|...|..+++..|+.+|+..|+..++.
T Consensus 27 l~~la~~t---~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 27 LRKIAELM---PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp HHHHHHTC---TTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred HHHHHHHc---CCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 44554433 33367788889999999999999999999999999988764
No 466
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=77.28 E-value=1 Score=42.80 Aligned_cols=24 Identities=17% Similarity=-0.000 Sum_probs=20.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
-.|+|.|++|+|||+|.+.+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 359999999999999999988653
No 467
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=77.27 E-value=1.2 Score=42.50 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|.+|+|||+|.+.+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999998764
No 468
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=77.23 E-value=1.2 Score=42.21 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|...+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999764
No 469
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=77.20 E-value=1.1 Score=47.53 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.8
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
..-+.|.|++|+||||+.+.|..++
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3458999999999999999998764
No 470
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=77.17 E-value=1.1 Score=48.16 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=22.4
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
..-+.|.|++|+|||||++.|.....
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 35689999999999999999987654
No 471
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=77.16 E-value=1.2 Score=42.75 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.1
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhh
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
...|+|.|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999998764
No 472
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=77.13 E-value=1.1 Score=42.92 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=20.8
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhh
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
...|+|.|++|+|||++.+.+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998863
No 473
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=77.07 E-value=1 Score=47.40 Aligned_cols=22 Identities=9% Similarity=0.101 Sum_probs=18.6
Q ss_pred cEEEECCCCcHHHHHHHHHHhh
Q 004256 118 GIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-++|+||||+|||+|+-.+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999998766554
No 474
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=77.03 E-value=1.1 Score=50.15 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
.-+.|.||+|+|||||.+.|..+.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 66889999999999999999998753
No 475
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=77.01 E-value=2.2 Score=47.06 Aligned_cols=24 Identities=25% Similarity=0.059 Sum_probs=19.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
..++|.+++|+|||.++-.+....
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 469999999999999987666554
No 476
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=76.88 E-value=1 Score=42.69 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.1
Q ss_pred CCcEEEECCCCcHHHHHHHHHHh
Q 004256 116 IGGIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
...|+|.|++|+|||+|.+.+..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45699999999999999998864
No 477
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=76.79 E-value=1.1 Score=42.69 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=20.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|...+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999998764
No 478
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=76.78 E-value=1.1 Score=42.08 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHh
Q 004256 117 GGIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
..|+|.|.+|+|||+|...+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999999874
No 479
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=76.76 E-value=1.1 Score=42.16 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=20.8
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHh
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
....|+|.|++|+|||+|...+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999998864
No 480
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=76.72 E-value=1.2 Score=44.57 Aligned_cols=26 Identities=12% Similarity=-0.065 Sum_probs=21.5
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-.|++.|++|+|||+++-.++..+.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 44699999999999999888776653
No 481
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=76.72 E-value=1.2 Score=43.38 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
...|+|.|.+|+||||++..+...+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3569999999999999999988764
No 482
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=76.69 E-value=1.1 Score=58.03 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=22.4
Q ss_pred CCCcEEEECCCCcHHHHHHHHHHhhC
Q 004256 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~~~l 140 (765)
...+|+|+||||||||+||.+++...
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999987653
No 483
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=76.60 E-value=1.1 Score=42.66 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.0
Q ss_pred cEEEECCCCcHHHHHHHHHHh
Q 004256 118 GIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 118 ~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
.|+|.|++|+|||+|.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999999864
No 484
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=76.58 E-value=1 Score=50.84 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILP 141 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~ 141 (765)
.-++|.|++|+|||||++.++...+
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3489999999999999999998754
No 485
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=76.56 E-value=0.6 Score=46.75 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.0
Q ss_pred EEEECCCCcHHHHHHHHHHhhCCC
Q 004256 119 IAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 119 VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
+.|.||+|+||||+.++|+.+++.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhccccc
Confidence 457899999999999999998763
No 486
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=76.52 E-value=0.98 Score=43.47 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHh
Q 004256 117 GGIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
-.|+|.|++|+|||+|.+.+..
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999998753
No 487
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=76.51 E-value=1.1 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=20.9
Q ss_pred CCcEEEECCCCcHHHHHHHH--HHhhC
Q 004256 116 IGGIAISGRRGTAKTVMARG--LHAIL 140 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~--l~~~l 140 (765)
..-++|.|++|+|||||++. +..+.
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45699999999999999999 45554
No 488
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=76.40 E-value=1.1 Score=51.33 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=23.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
..-+.|.||+|+||||+++.|..+.+.
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~~p 395 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFYDI 395 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccCC
Confidence 455999999999999999999998764
No 489
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=76.16 E-value=1.3 Score=44.25 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
..|+|.|++|+|||+|...|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 46999999999999999999864
No 490
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=76.15 E-value=1.1 Score=51.78 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=20.3
Q ss_pred CCCCcEEEECCCCcHHHHHH-HHHHhhC
Q 004256 114 REIGGIAISGRRGTAKTVMA-RGLHAIL 140 (765)
Q Consensus 114 ~~~~~VLi~Ge~GTGKt~lA-r~l~~~l 140 (765)
...++++|.|+||||||+++ ..++.++
T Consensus 20 ~~~~~~lV~a~aGsGKT~~l~~ri~~l~ 47 (647)
T 3lfu_A 20 APRSNLLVLAGAGSGKTRVLVHRIAWLM 47 (647)
T ss_dssp CCSSCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 34789999999999999874 4444443
No 491
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=76.15 E-value=1.2 Score=42.91 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|.+|+|||+|++.+...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 46999999999999999999864
No 492
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=76.15 E-value=1.2 Score=43.00 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=20.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998764
No 493
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=76.13 E-value=1.2 Score=42.42 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=21.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhh
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
...|+|.|++|+|||+|...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 346999999999999999999763
No 494
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=76.04 E-value=1.3 Score=42.68 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|...+...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998753
No 495
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=76.04 E-value=0.74 Score=50.14 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=24.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 116 ~~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
.+-+.|+|++|+|||++.++|+-+++.
T Consensus 60 ~G~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 60 GGFCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp SSEEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 347999999999999999999998863
No 496
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=75.86 E-value=1.2 Score=43.31 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=20.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
..|+|.|++|+|||+|++.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999874
No 497
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=75.81 E-value=0.81 Score=42.96 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=19.9
Q ss_pred CCCcEEEECCCCcHHHHHHHHHH
Q 004256 115 EIGGIAISGRRGTAKTVMARGLH 137 (765)
Q Consensus 115 ~~~~VLi~Ge~GTGKt~lAr~l~ 137 (765)
....|+|.|++|+|||+|...+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 45679999999999999998775
No 498
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=75.69 E-value=0.93 Score=42.61 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=9.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHh
Q 004256 117 GGIAISGRRGTAKTVMARGLHA 138 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~ 138 (765)
-.|+|.|++|+|||+|...+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3599999999999999998864
No 499
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=75.56 E-value=1.2 Score=43.10 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHhh
Q 004256 117 GGIAISGRRGTAKTVMARGLHAI 139 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~ 139 (765)
-.|+|.|++|+|||+|++.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999998764
No 500
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=75.47 E-value=1.2 Score=50.65 Aligned_cols=26 Identities=35% Similarity=0.341 Sum_probs=22.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHhhCCC
Q 004256 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (765)
Q Consensus 117 ~~VLi~Ge~GTGKt~lAr~l~~~l~~ 142 (765)
.-+.|.|++|+|||||++.|..+.+.
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34889999999999999999998764
Done!