Query 004259
Match_columns 765
No_of_seqs 550 out of 3518
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 20:19:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0207 Cation transport ATPas 100.0 6E-114 1E-118 954.1 52.8 671 53-762 1-681 (951)
2 COG2217 ZntA Cation transport 100.0 9.1E-94 2E-98 813.5 55.8 492 203-762 3-496 (713)
3 PRK10671 copA copper exporting 100.0 3.6E-87 7.8E-92 799.4 62.4 574 128-762 3-609 (834)
4 PRK11033 zntA zinc/cadmium/mer 100.0 2.5E-76 5.4E-81 692.0 54.4 477 128-762 53-530 (741)
5 TIGR01511 ATPase-IB1_Cu copper 100.0 9.8E-72 2.1E-76 636.6 43.5 370 346-762 1-371 (562)
6 TIGR01525 ATPase-IB_hvy heavy 100.0 2.9E-59 6.2E-64 535.9 39.0 337 365-761 1-342 (556)
7 TIGR01512 ATPase-IB2_Cd heavy 100.0 1.8E-59 4E-64 534.0 37.1 330 365-762 1-330 (536)
8 TIGR01647 ATPase-IIIA_H plasma 100.0 2.8E-52 6.1E-57 490.7 37.5 326 397-761 55-391 (755)
9 TIGR01497 kdpB K+-transporting 100.0 2.8E-51 6E-56 465.7 40.1 328 396-761 63-399 (675)
10 PRK01122 potassium-transportin 100.0 9.2E-51 2E-55 462.6 38.3 324 401-761 69-398 (679)
11 PRK14010 potassium-transportin 100.0 1.8E-49 4E-54 451.6 37.4 315 407-761 75-394 (673)
12 TIGR01524 ATPase-IIIB_Mg magne 100.0 2.2E-48 4.9E-53 463.3 36.2 285 400-705 90-397 (867)
13 TIGR01494 ATPase_P-type ATPase 100.0 1E-48 2.3E-53 444.6 29.0 302 405-762 3-309 (499)
14 PRK10517 magnesium-transportin 100.0 9.3E-48 2E-52 457.6 37.7 289 400-705 124-432 (902)
15 PRK15122 magnesium-transportin 100.0 2.5E-47 5.3E-52 454.8 36.7 327 396-760 110-475 (903)
16 TIGR01522 ATPase-IIA2_Ca golgi 100.0 2.9E-46 6.4E-51 448.0 36.7 249 404-672 86-349 (884)
17 TIGR01517 ATPase-IIB_Ca plasma 100.0 9.3E-44 2E-48 429.0 38.0 269 396-672 127-401 (941)
18 TIGR01106 ATPase-IIC_X-K sodiu 100.0 1.3E-42 2.9E-47 420.0 35.8 253 398-670 104-367 (997)
19 TIGR01116 ATPase-IIA1_Ca sarco 100.0 2E-42 4.4E-47 415.8 34.9 265 396-671 35-313 (917)
20 COG0474 MgtA Cation transport 100.0 8E-41 1.7E-45 399.6 29.4 283 404-705 109-427 (917)
21 TIGR01657 P-ATPase-V P-type AT 100.0 2.4E-40 5.1E-45 403.1 30.4 287 396-703 191-524 (1054)
22 TIGR01523 ATPase-IID_K-Na pota 100.0 3.7E-40 8.1E-45 397.5 30.4 249 400-670 83-382 (1053)
23 KOG0202 Ca2+ transporting ATPa 100.0 8.9E-41 1.9E-45 367.0 17.8 263 397-671 77-356 (972)
24 KOG0204 Calcium transporting A 100.0 6.9E-39 1.5E-43 351.6 20.8 339 349-705 144-521 (1034)
25 KOG0205 Plasma membrane H+-tra 100.0 8.9E-37 1.9E-41 325.0 16.7 288 394-703 94-387 (942)
26 PF00122 E1-E2_ATPase: E1-E2 A 100.0 1.9E-35 4.1E-40 302.7 20.6 223 403-643 1-230 (230)
27 KOG0208 Cation transport ATPas 100.0 3.4E-34 7.3E-39 319.2 26.5 270 377-672 198-493 (1140)
28 TIGR01652 ATPase-Plipid phosph 100.0 2.1E-32 4.4E-37 334.7 24.6 259 396-670 52-382 (1057)
29 COG2216 KdpB High-affinity K+ 100.0 2.9E-32 6.3E-37 284.7 20.9 281 405-705 73-357 (681)
30 PLN03190 aminophospholipid tra 100.0 9.2E-31 2E-35 317.0 25.1 280 376-670 115-476 (1178)
31 KOG0203 Na+/K+ ATPase, alpha s 100.0 1.5E-31 3.2E-36 293.9 14.1 253 401-673 129-392 (1019)
32 KOG0209 P-type ATPase [Inorgan 100.0 8.6E-28 1.9E-32 262.5 16.5 289 395-703 214-551 (1160)
33 KOG0210 P-type ATPase [Inorgan 99.9 3E-24 6.4E-29 230.9 21.3 282 395-709 129-484 (1051)
34 KOG0206 P-type ATPase [General 99.9 2.3E-21 4.9E-26 227.9 16.6 281 376-671 60-411 (1151)
35 KOG0207 Cation transport ATPas 99.6 1.9E-14 4E-19 162.5 14.9 147 45-196 68-214 (951)
36 PF00403 HMA: Heavy-metal-asso 99.3 1.7E-11 3.7E-16 97.4 7.7 62 131-192 1-62 (62)
37 PRK10671 copA copper exporting 99.2 9.9E-11 2.2E-15 141.3 15.7 142 46-195 3-163 (834)
38 COG2608 CopZ Copper chaperone 99.2 7.7E-11 1.7E-15 95.8 8.1 68 128-195 2-69 (71)
39 PF00403 HMA: Heavy-metal-asso 99.1 2.8E-10 6E-15 90.4 8.7 62 49-110 1-62 (62)
40 COG2608 CopZ Copper chaperone 99.1 5.1E-10 1.1E-14 91.0 8.9 68 45-112 1-68 (71)
41 PF00702 Hydrolase: haloacid d 98.9 1.7E-09 3.7E-14 109.2 6.1 86 647-762 1-86 (215)
42 COG2217 ZntA Cation transport 98.1 3.4E-06 7.5E-11 97.9 7.0 66 129-195 3-69 (713)
43 TIGR00003 copper ion binding p 97.6 0.00027 5.8E-09 55.0 7.7 65 129-193 3-67 (68)
44 TIGR00003 copper ion binding p 97.5 0.00072 1.6E-08 52.5 8.8 67 45-111 1-67 (68)
45 PLN02957 copper, zinc superoxi 97.3 0.00083 1.8E-08 68.6 8.6 68 128-199 6-73 (238)
46 KOG4656 Copper chaperone for s 97.2 0.00077 1.7E-08 64.0 6.2 63 129-195 8-70 (247)
47 KOG1603 Copper chaperone [Inor 97.1 0.0014 3.1E-08 53.5 6.0 57 134-193 10-67 (73)
48 KOG4656 Copper chaperone for s 96.9 0.0031 6.7E-08 60.1 7.6 63 47-113 8-70 (247)
49 PLN02957 copper, zinc superoxi 96.7 0.0066 1.4E-07 62.0 8.9 66 46-115 6-71 (238)
50 PRK11033 zntA zinc/cadmium/mer 96.4 0.011 2.3E-07 70.9 9.3 67 45-113 52-118 (741)
51 KOG1603 Copper chaperone [Inor 96.3 0.011 2.3E-07 48.4 6.1 55 51-108 9-63 (73)
52 PF00873 ACR_tran: AcrB/AcrD/A 93.7 3.6 7.8E-05 51.7 20.3 199 47-248 44-276 (1021)
53 TIGR02052 MerP mercuric transp 92.7 0.68 1.5E-05 38.7 8.3 66 130-195 25-90 (92)
54 TIGR02052 MerP mercuric transp 90.6 1.4 3E-05 36.8 8.0 64 47-110 24-87 (92)
55 KOG4383 Uncharacterized conser 90.1 15 0.00033 41.9 17.0 36 444-482 162-197 (1354)
56 PRK14054 methionine sulfoxide 86.9 1.2 2.5E-05 42.8 5.3 49 140-188 10-77 (172)
57 TIGR00915 2A0602 The (Largely 85.3 1.2E+02 0.0025 38.5 23.9 141 47-189 44-210 (1044)
58 PRK10555 aminoglycoside/multid 84.3 1.2E+02 0.0027 38.2 22.8 140 48-189 45-210 (1037)
59 PRK09577 multidrug efflux prot 84.2 1.3E+02 0.0028 38.1 22.8 145 47-192 44-212 (1032)
60 cd00371 HMA Heavy-metal-associ 84.2 5.6 0.00012 27.7 7.0 58 134-192 4-61 (63)
61 PRK10503 multidrug efflux syst 83.3 1.4E+02 0.003 37.8 23.0 142 47-189 55-220 (1040)
62 PRK05528 methionine sulfoxide 82.6 2.6 5.7E-05 39.8 5.4 49 140-188 8-70 (156)
63 PRK13748 putative mercuric red 80.7 4.6 9.9E-05 47.1 8.0 67 131-198 3-69 (561)
64 PRK13014 methionine sulfoxide 80.4 2.6 5.6E-05 41.0 4.6 49 140-188 15-82 (186)
65 PRK00058 methionine sulfoxide 79.7 3.1 6.6E-05 41.3 5.0 48 140-187 52-118 (213)
66 PRK15127 multidrug efflux syst 79.0 1.9E+02 0.0041 36.7 21.6 142 47-189 44-210 (1049)
67 PF01625 PMSR: Peptide methion 76.5 6 0.00013 37.4 5.8 49 140-188 7-74 (155)
68 PF01206 TusA: Sulfurtransfera 75.4 14 0.0003 29.5 7.0 67 131-208 2-68 (70)
69 cd00371 HMA Heavy-metal-associ 75.3 23 0.0005 24.2 7.9 41 51-91 3-43 (63)
70 TIGR00914 2A0601 heavy metal e 74.6 2.4E+02 0.0052 35.7 21.0 292 62-373 67-403 (1051)
71 PRK13748 putative mercuric red 72.5 12 0.00027 43.5 8.6 64 49-113 3-66 (561)
72 COG0225 MsrA Peptide methionin 72.5 6.7 0.00014 37.3 4.9 50 140-189 13-81 (174)
73 PF01206 TusA: Sulfurtransfera 72.3 12 0.00025 30.0 5.8 53 49-111 2-54 (70)
74 PRK14054 methionine sulfoxide 71.2 7 0.00015 37.6 4.9 47 216-262 12-77 (172)
75 COG0841 AcrB Cation/multidrug 71.1 39 0.00084 42.1 12.4 119 143-262 63-208 (1009)
76 TIGR00401 msrA methionine-S-su 69.6 9 0.0002 35.9 5.2 49 140-188 7-74 (149)
77 PRK10555 aminoglycoside/multid 68.1 40 0.00087 42.5 12.0 119 143-262 62-209 (1037)
78 PRK05550 bifunctional methioni 67.5 9 0.0002 39.9 5.1 49 139-187 133-200 (283)
79 PRK10614 multidrug efflux syst 66.5 3.5E+02 0.0077 34.2 25.9 142 47-189 46-211 (1025)
80 COG4669 EscJ Type III secretor 66.4 8 0.00017 38.7 4.2 108 154-266 43-177 (246)
81 COG4669 EscJ Type III secretor 65.9 11 0.00025 37.6 5.2 98 55-162 15-130 (246)
82 PF11491 DUF3213: Protein of u 63.8 9.9 0.00021 31.2 3.5 52 143-194 13-64 (88)
83 PF11491 DUF3213: Protein of u 63.5 18 0.00039 29.7 5.0 57 210-266 6-62 (88)
84 PRK11018 hypothetical protein; 62.5 55 0.0012 26.9 8.0 68 130-208 9-76 (78)
85 PRK05528 methionine sulfoxide 61.5 16 0.00036 34.5 5.2 47 216-262 10-70 (156)
86 COG2177 FtsX Cell division pro 61.3 2.2E+02 0.0048 30.1 19.8 76 140-234 71-150 (297)
87 PRK15127 multidrug efflux syst 60.4 75 0.0016 40.1 12.4 119 143-262 62-209 (1049)
88 PRK13014 methionine sulfoxide 59.8 13 0.00027 36.3 4.3 47 216-262 17-82 (186)
89 TIGR00401 msrA methionine-S-su 58.9 18 0.0004 33.9 5.1 47 216-262 9-74 (149)
90 PRK10614 multidrug efflux syst 58.9 3.6E+02 0.0077 34.1 17.9 131 59-189 577-730 (1025)
91 PRK00058 methionine sulfoxide 58.0 14 0.00031 36.6 4.4 47 216-262 54-119 (213)
92 COG1888 Uncharacterized protei 57.8 52 0.0011 27.7 6.7 67 129-195 7-78 (97)
93 PF00873 ACR_tran: AcrB/AcrD/A 57.3 5E+02 0.011 32.8 22.2 132 58-189 577-742 (1021)
94 COG0225 MsrA Peptide methionin 55.3 20 0.00043 34.2 4.6 50 210-262 12-80 (174)
95 PF10173 Mit_KHE1: Mitochondri 53.8 31 0.00068 33.7 6.0 24 241-264 104-127 (187)
96 TIGR00915 2A0602 The (Largely 53.6 1.1E+02 0.0023 38.7 12.2 119 143-262 62-209 (1044)
97 cd03421 SirA_like_N SirA_like_ 53.3 85 0.0019 24.7 7.5 64 132-208 2-65 (67)
98 PRK15122 magnesium-transportin 52.9 1.2E+02 0.0026 37.7 12.2 188 411-626 127-352 (903)
99 PRK11018 hypothetical protein; 52.2 51 0.0011 27.1 6.1 55 48-112 9-63 (78)
100 PF01625 PMSR: Peptide methion 52.2 28 0.0006 33.0 5.1 48 216-263 9-75 (155)
101 cd03422 YedF YedF is a bacteri 51.0 1E+02 0.0022 24.6 7.6 66 132-208 2-67 (69)
102 cd03423 SirA SirA (also known 50.2 1.2E+02 0.0025 24.2 7.8 66 132-208 2-67 (69)
103 PRK09577 multidrug efflux prot 50.1 1.3E+02 0.0029 37.9 12.2 120 143-263 62-209 (1032)
104 PRK09579 multidrug efflux prot 47.1 7E+02 0.015 31.5 26.2 140 48-189 47-210 (1017)
105 TIGR01106 ATPase-IIC_X-K sodiu 46.8 4.9E+02 0.011 32.8 16.3 197 406-624 115-325 (997)
106 cd00291 SirA_YedF_YeeD SirA, Y 45.9 1.4E+02 0.0031 23.3 7.8 66 132-208 2-67 (69)
107 cd03420 SirA_RHOD_Pry_redox Si 45.8 54 0.0012 26.1 5.3 53 50-112 2-54 (69)
108 cd03420 SirA_RHOD_Pry_redox Si 45.4 1.5E+02 0.0032 23.6 7.8 66 132-208 2-67 (69)
109 cd04888 ACT_PheB-BS C-terminal 44.8 1.6E+02 0.0034 23.4 8.8 58 178-235 13-74 (76)
110 PF02680 DUF211: Uncharacteriz 43.3 69 0.0015 27.3 5.5 66 129-195 6-76 (95)
111 PRK14018 trifunctional thiored 42.9 37 0.00081 38.8 5.3 49 140-188 205-271 (521)
112 KOG1635 Peptide methionine sul 42.9 46 0.00099 31.6 4.8 48 140-187 31-97 (191)
113 COG1888 Uncharacterized protei 41.8 1.6E+02 0.0034 24.9 7.2 67 46-112 6-77 (97)
114 PRK05550 bifunctional methioni 40.1 42 0.00091 35.1 4.7 47 216-262 136-201 (283)
115 PF12710 HAD: haloacid dehalog 39.3 15 0.00034 35.5 1.4 13 650-662 1-13 (192)
116 cd03422 YedF YedF is a bacteri 38.6 77 0.0017 25.3 5.1 53 50-112 2-54 (69)
117 cd03423 SirA SirA (also known 38.6 93 0.002 24.7 5.6 53 50-112 2-54 (69)
118 COG0425 SirA Predicted redox p 38.6 1.1E+02 0.0024 25.1 6.1 55 47-111 5-60 (78)
119 COG4004 Uncharacterized protei 37.5 1.1E+02 0.0023 25.9 5.6 47 177-246 12-58 (96)
120 cd03421 SirA_like_N SirA_like_ 37.2 72 0.0016 25.1 4.7 52 50-112 2-53 (67)
121 PF15584 Imm44: Immunity prote 36.5 17 0.00037 30.5 1.0 19 461-479 13-31 (94)
122 COG0841 AcrB Cation/multidrug 36.3 9.8E+02 0.021 30.2 29.3 162 48-211 46-232 (1009)
123 PRK00299 sulfur transfer prote 35.5 1.4E+02 0.0029 24.8 6.3 56 47-112 9-64 (81)
124 PRK10553 assembly protein for 35.4 1.5E+02 0.0033 25.0 6.4 32 143-174 19-50 (87)
125 cd00291 SirA_YedF_YeeD SirA, Y 35.2 1E+02 0.0022 24.2 5.4 53 50-112 2-54 (69)
126 cd04888 ACT_PheB-BS C-terminal 35.0 1.9E+02 0.0041 22.9 7.1 70 88-161 5-74 (76)
127 PRK10503 multidrug efflux syst 33.9 1.1E+03 0.024 29.9 18.7 132 58-189 586-744 (1040)
128 PRK10929 putative mechanosensi 33.8 6.8E+02 0.015 31.8 14.4 24 336-359 636-659 (1109)
129 COG2177 FtsX Cell division pro 33.8 2E+02 0.0043 30.5 8.6 90 48-160 61-150 (297)
130 TIGR01652 ATPase-Plipid phosph 31.1 9.9E+02 0.021 30.4 15.7 82 378-481 31-113 (1057)
131 KOG1635 Peptide methionine sul 29.9 93 0.002 29.6 4.7 47 215-261 32-97 (191)
132 PF03927 NapD: NapD protein; 29.8 2.4E+02 0.0052 23.2 6.8 13 223-235 59-71 (79)
133 PF03120 DNA_ligase_OB: NAD-de 29.3 28 0.00061 29.0 1.1 22 454-475 45-67 (82)
134 TIGR01657 P-ATPase-V P-type AT 28.7 5.2E+02 0.011 32.8 12.6 34 594-627 399-432 (1054)
135 PRK13022 secF preprotein trans 28.0 7.3E+02 0.016 26.1 15.8 35 159-194 35-70 (289)
136 PF09580 Spore_YhcN_YlaJ: Spor 27.8 1.2E+02 0.0027 29.0 5.6 34 142-175 76-109 (177)
137 TIGR01517 ATPase-IIB_Ca plasma 27.2 1.3E+03 0.029 28.8 16.6 170 450-627 188-360 (941)
138 TIGR01524 ATPase-IIIB_Mg magne 27.1 6E+02 0.013 31.4 12.5 109 403-513 97-223 (867)
139 KOG0208 Cation transport ATPas 25.8 3.1E+02 0.0068 33.7 9.0 67 552-628 387-453 (1140)
140 TIGR01647 ATPase-IIIA_H plasma 25.3 2.1E+02 0.0046 34.7 8.1 188 412-627 72-270 (755)
141 COG1778 Low specificity phosph 24.9 46 0.001 31.3 1.8 26 641-666 2-27 (170)
142 PRK11152 ilvM acetolactate syn 24.7 2.8E+02 0.0061 22.7 6.2 65 91-161 11-75 (76)
143 PHA02669 hypothetical protein; 24.7 1.6E+02 0.0034 27.6 5.1 47 365-430 1-48 (210)
144 PF02680 DUF211: Uncharacteriz 24.3 1.5E+02 0.0033 25.3 4.6 50 62-111 20-74 (95)
145 TIGR00489 aEF-1_beta translati 23.6 3.9E+02 0.0085 22.6 7.0 67 170-236 10-83 (88)
146 TIGR00739 yajC preprotein tran 22.5 4.2E+02 0.0091 22.2 6.9 16 421-436 26-42 (84)
147 PRK14018 trifunctional thiored 22.2 1.3E+02 0.0028 34.6 5.0 47 216-262 207-271 (521)
148 PRK00299 sulfur transfer prote 22.1 4.5E+02 0.0098 21.6 8.2 68 130-208 10-77 (81)
149 PRK06788 flagellar motor switc 21.7 5.8E+02 0.013 23.0 8.0 32 504-535 78-110 (119)
150 PRK09579 multidrug efflux prot 21.6 1.7E+03 0.037 28.1 17.3 139 58-196 574-736 (1017)
151 TIGR01494 ATPase_P-type ATPase 21.5 1.2E+03 0.026 26.4 14.1 151 450-626 56-213 (499)
152 TIGR01116 ATPase-IIA1_Ca sarco 21.5 1.5E+03 0.033 28.1 14.7 216 402-627 44-273 (917)
153 PRK15385 magnesium transport p 21.4 4.4E+02 0.0096 26.6 8.1 92 144-238 124-223 (225)
154 COG0474 MgtA Cation transport 21.0 1.1E+03 0.023 29.6 13.0 203 401-627 110-332 (917)
155 PF04120 Iron_permease: Low af 20.3 1.2E+02 0.0026 27.8 3.5 38 549-586 3-41 (132)
156 cd00210 PTS_IIA_glc PTS_IIA, P 20.3 1.2E+02 0.0025 27.6 3.4 53 462-514 26-100 (124)
No 1
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-114 Score=954.06 Aligned_cols=671 Identities=47% Similarity=0.745 Sum_probs=606.8
Q ss_pred CCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcchhhhcccCCCCCCCCcceecee
Q 004259 53 TGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQY 132 (765)
Q Consensus 53 ~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~~ 132 (765)
.||+|..|.+.+++++++.+|+.+..+++.++++.+.|+ ...+++.+.+++++.||++.....+..+ ..+..+
T Consensus 1 ~gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~-~~~~~~~i~~~ied~gf~~~~~~~~~~~------~~~~~l 73 (951)
T KOG0207|consen 1 KGMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYD-NIVSPESIKETIEDMGFEASLLSDSEIT------ASKCYL 73 (951)
T ss_pred CCccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEe-eccCHHHHHHHhhcccceeeecccCccc------cceeEE
Confidence 489999999999999999999999999999999999999 7789999999999999999776543321 225679
Q ss_pred ecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCceeEeecCC---cceeEEEEe
Q 004259 133 TIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSG---QDKILLQVT 209 (765)
Q Consensus 133 ~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~---~~~~~~~i~ 209 (765)
++.||+|++|+..||+.+++.+|+.++.+.+..+++.+.|||..++++.+.+.++++||.+....+.+ ...+.|.+.
T Consensus 74 ~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~~~~~~~i~L~v~ 153 (951)
T KOG0207|consen 74 SVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVNGNSNQKIYLDVL 153 (951)
T ss_pred EecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhcccCCCCCcEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999998876532 257899999
Q ss_pred cccchhhhHHHHhhhccCCCceEEEeecCCCeEEEEecCCCCChhhHHHhhhhcCCCcceeEecCccc---cccccchhh
Q 004259 210 GVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNGKFQIRVMNPFA---RMTSRDSEE 286 (765)
Q Consensus 210 gm~c~~ca~~ie~~l~~~~GV~~v~vn~~~~~~~V~ydp~~i~~~~i~~~i~~~g~~~~~~~~~~~~~---~~~~~~~~e 286 (765)
||.|.+|+..||+.+.+++||.+++++..++++.|.|||..+++|++.+.++..+ |.+....... ....+...+
T Consensus 154 g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~---~~~~~~~~~~~~~~~~l~~~~e 230 (951)
T KOG0207|consen 154 GMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETG---FEASVRPYGDTTFKNSLKHKEE 230 (951)
T ss_pred cccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhc---ccceeeeccccchhhhhhhhhH
Confidence 9999999999999999999999999999999999999999999999999999998 6554322111 112234567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhccCCcchHHHHHHHHHHHHhhhcCHHHHHHHHHHHHcCCCChh
Q 004259 287 TSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLNWALVSVVQFVIGKRFYTAAGRALRNGSTNMD 366 (765)
Q Consensus 287 ~~~~~~~~~~~lllai~v~i~~m~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~g~~~~~~a~~~l~~~~~~md 366 (765)
+++|++.|.+++.+++|++++.+.++++.++...+.....++++..+++++|++|++|..||+||..||++|+++..|||
T Consensus 231 i~~w~~~fl~s~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~vqf~~G~~fy~~A~ksL~~g~~nMd 310 (951)
T KOG0207|consen 231 IRKWKRPFLISLGFSLPVSFAMIICPPLAWILALLVPFLPGLSYGNSLSFVLATPVQFVGGRPFYLAAYKSLKRGSANMD 310 (951)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHhccchhhhhhhccccccchhhhHHHhhhheeeEEecceeeHHHHHHHHhcCCCCce
Confidence 89999999999999999999888887755433222222456778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCC
Q 004259 367 VLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVG 446 (765)
Q Consensus 367 ~l~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g 446 (765)
+|++|++.++|+||++.++....... +..|||++.|++.|+.+|+|+|.+++.|+..++.+|.++.|.++.++ .+|
T Consensus 311 vLv~L~t~aay~~S~~~~~~~~~~~~-~~tfFdt~~MLi~fi~lgr~LE~~Ak~kts~alskLmsl~p~~a~ii---~~g 386 (951)
T KOG0207|consen 311 VLVVLGTTAAYFYSIFSLLAAVVFDS-PPTFFDTSPMLITFITLGRWLESLAKGKTSEALSKLMSLAPSKATII---EDG 386 (951)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHccC-cchhccccHHHHHHHHHHHHHHHHhhccchHHHHHHhhcCcccceEe---ecC
Confidence 99999999999999999988766644 78899999999999999999999999999999999999999999999 555
Q ss_pred ceeeeEEeeccCcCCCCEEEEcCCCccCccEEEEeccceeeccccCCCcceeccCCCCceeeeeeeecceEEEEEEEeCC
Q 004259 447 KCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGS 526 (765)
Q Consensus 447 ~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~g~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~ 526 (765)
. .+++|+.+.+++||+|.|+||++||+||+|++|++.||||++|||+.||.|++|++|.+||+|.+|.+.+++++.|+
T Consensus 387 ~--~e~eI~v~lvq~gdivkV~pG~kiPvDG~Vv~Gss~VDEs~iTGEs~PV~Kk~gs~ViaGsiN~nG~l~VkaT~~g~ 464 (951)
T KOG0207|consen 387 S--EEKEIPVDLVQVGDIVKVKPGEKIPVDGVVVDGSSEVDESLITGESMPVPKKKGSTVIAGSINLNGTLLVKATKVGG 464 (951)
T ss_pred C--cceEeeeeeeccCCEEEECCCCccccccEEEeCceeechhhccCCceecccCCCCeeeeeeecCCceEEEEEEeccc
Confidence 2 27899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCcccCCCcchHHHHHHHHhhee
Q 004259 527 DAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVL-GAYPEQWLPENGTHFVFALMFSISVV 605 (765)
Q Consensus 527 ~t~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~vl 605 (765)
||.+++|+++++++|.+|+|+|+++|+++.||+|+++++++++|++|++.+.. ..++..|. ..+..+|.++++|+
T Consensus 465 dttla~IvkLVEEAQ~sKapiQq~aDkia~yFvP~Vi~lS~~t~~~w~~~g~~~~~~~~~~~----~~~~~a~~~aisVl 540 (951)
T KOG0207|consen 465 DTTLAQIVKLVEEAQLSKAPIQQLADKIAGYFVPVVIVLSLATFVVWILIGKIVFKYPRSFF----DAFSHAFQLAISVL 540 (951)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHHHhhhcCCchhhHHHHHHHHHHHHHccccccCcchhh----HHHHHHHHhhheEE
Confidence 99999999999999999999999999999999999999999999999998763 33444443 57889999999999
Q ss_pred eecccchhhhhHHHHHHHHHHHHhhcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEecCC-CCHHHHHHHHH
Q 004259 606 VIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-MDRGEFLTLVA 684 (765)
Q Consensus 606 v~~~P~al~la~p~~~~~~~~~~~~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~-~~~~~~l~~a~ 684 (765)
+++|||+|+||+|++++.+++.++++|+|+|+++.+|.+.++++|+||||||||+|+|.|.++....+ .+..++|.+++
T Consensus 541 viACPCaLgLATPtAvmvatgvgA~nGvLIKGge~LE~~hkv~tVvFDKTGTLT~G~~~V~~~~~~~~~~~~~e~l~~v~ 620 (951)
T KOG0207|consen 541 VIACPCALGLATPTAVMVATGVGATNGVLIKGGEALEKAHKVKTVVFDKTGTLTEGKPTVVDFKSLSNPISLKEALALVA 620 (951)
T ss_pred EEECchhhhcCCceEEEEEechhhhcceEEcCcHHHHHHhcCCEEEEcCCCceecceEEEEEEEecCCcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999877 78899999999
Q ss_pred HHHccCCChHHHHHHHHHHhccCCCCCCCCCCCCCCCcCcCCCCcccCCCceeeecCCe--eEEEEcCeEEEeecccccc
Q 004259 685 SAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRG--IQCFISGKQVLVSFRFHRT 762 (765)
Q Consensus 685 ~~e~~s~hPia~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G--v~~~~~g~~~~vG~~~~~~ 762 (765)
++|+.|+||+++||++||++.. . ......+.++++.||+| +.+.++|+++.+||++||+
T Consensus 621 a~Es~SeHPig~AIv~yak~~~-----------~--------~~~~~~~~~~~~~pg~g~~~~~~~~~~~i~iGN~~~~~ 681 (951)
T KOG0207|consen 621 AMESGSEHPIGKAIVDYAKEKL-----------V--------EPNPEGVLSFEYFPGEGIYVTVTVDGNEVLIGNKEWMS 681 (951)
T ss_pred HHhcCCcCchHHHHHHHHHhcc-----------c--------ccCccccceeecccCCCcccceEEeeeEEeechHHHHH
Confidence 9999999999999999999872 0 01123467899999999 8899999999999999996
No 2
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.1e-94 Score=813.54 Aligned_cols=492 Identities=43% Similarity=0.662 Sum_probs=438.4
Q ss_pred eeEEEEecccchhhhHHHHhhhccCCCceEEEeecCCCeEEEEecCCCCC-hhhHHHhhhhcCCCcceeEec-Ccccccc
Q 004259 203 KILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALS-SRSLVDGIAGRSNGKFQIRVM-NPFARMT 280 (765)
Q Consensus 203 ~~~~~i~gm~c~~ca~~ie~~l~~~~GV~~v~vn~~~~~~~V~ydp~~i~-~~~i~~~i~~~g~~~~~~~~~-~~~~~~~ 280 (765)
+..+.++||+|.+|+.++| .+++.+||.++++|+.++.+.|.||+...+ .+++...++..| |..... .......
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~g---y~~~~~~~~~~~~~ 78 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAG---YSARLTAALADPAE 78 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcC---ccccccccccchhh
Confidence 5679999999999999999 999999999999999999999999998777 799999999999 544320 0000000
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhccCCcchHHHHHHHHHHHHhhhcCHHHHHHHHHHHHc
Q 004259 281 SRDSEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLNWALVSVVQFVIGKRFYTAAGRALRN 360 (765)
Q Consensus 281 ~~~~~e~~~~~~~~~~~lllai~v~i~~m~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~g~~~~~~a~~~l~~ 360 (765)
...... ...+++++.+.++.++.++..+.... +.....|+++++++|++||+|+|||+.+|+++++
T Consensus 79 ~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~v~~~~g~~f~~~a~~~l~~ 144 (713)
T COG2217 79 AEARLL-RELLRRLIIAGLLTLPLLLLSLGLLL-------------GAFLLPWVSFLLATPVLFYGGWPFYRGAWRALRR 144 (713)
T ss_pred hhhhhh-hhHHHHHHHHHHHHHHHHHHHHHhhc-------------chhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 000011 33445555666666665554322111 0135568999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEE
Q 004259 361 GSTNMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLV 440 (765)
Q Consensus 361 ~~~~md~l~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~ 440 (765)
+++|||+|+++|+++||+||++.++.. .||++++++++++++|+++|.+++.|+++++++|.++.|++++++
T Consensus 145 ~~~~md~Lv~la~~~A~~~s~~~~~~~--------~yf~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~A~~~ 216 (713)
T COG2217 145 GRLNMDTLVALATIGAYAYSLYATLFP--------VYFEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKTATVV 216 (713)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 999999999999999999999988763 799999999999999999999999999999999999999999888
Q ss_pred EecCCCceeeeEEeeccCcCCCCEEEEcCCCccCccEEEEeccceeeccccCCCcceeccCCCCceeeeeeeecceEEEE
Q 004259 441 VKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQ 520 (765)
Q Consensus 441 ~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~g~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~ 520 (765)
. +|| ++++||+++|++||+|+|+|||+||+||+|++|++.||||+|||||.|+.|.+||.|++||+|.+|.++++
T Consensus 217 ~--~~~---~~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~G~s~vDeS~iTGEs~PV~k~~Gd~V~aGtiN~~G~l~i~ 291 (713)
T COG2217 217 R--GDG---EEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSSSVDESMLTGESLPVEKKPGDEVFAGTVNLDGSLTIR 291 (713)
T ss_pred e--cCC---cEEEEEHHHCCCCCEEEECCCCEecCCeEEEeCcEEeecchhhCCCCCEecCCCCEEeeeEEECCccEEEE
Confidence 4 255 37899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcchHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHH
Q 004259 521 ATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMF 600 (765)
Q Consensus 521 v~~~g~~t~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (765)
|+++|.||++++|+++++++|.+|+|+|+++|+++.||+|.++++++++|++|++.+. .+|..++++
T Consensus 292 vt~~~~dt~la~Ii~LVe~Aq~~Ka~iqrlaDr~a~~fvp~vl~ia~l~f~~w~~~~~-------------~~~~~a~~~ 358 (713)
T COG2217 292 VTRVGADTTLARIIRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPLFGG-------------GDWETALYR 358 (713)
T ss_pred EEecCccCHHHHHHHHHHHHhhCCchHHHHHHHHHHccHHHHHHHHHHHHHHHHHhcC-------------CcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998887641 368889999
Q ss_pred HhheeeecccchhhhhHHHHHHHHHHHHhhcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHH
Q 004259 601 SISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFL 680 (765)
Q Consensus 601 ~i~vlv~~~P~al~la~p~~~~~~~~~~~~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l 680 (765)
++++|+++|||||++++|++++.++++++|+||++|+++++|+++++|+++||||||||+|+|+|+++...++ +++++|
T Consensus 359 a~avLVIaCPCALgLAtP~ai~~g~g~aA~~GILiK~g~~LE~l~~v~tvvFDKTGTLT~G~p~v~~v~~~~~-~e~~~L 437 (713)
T COG2217 359 ALAVLVIACPCALGLATPTAILVGIGRAARRGILIKGGEALERLAKVDTVVFDKTGTLTEGKPEVTDVVALDG-DEDELL 437 (713)
T ss_pred HHhheeeeCccHHHhHHHHHHHHHHHHHHhCceEEeChHHHHhhccCCEEEEeCCCCCcCCceEEEEEecCCC-CHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888 889999
Q ss_pred HHHHHHHccCCChHHHHHHHHHHhccCCCCCCCCCCCCCCCcCcCCCCcccCCCceeeecCCeeEEEEcCeEEEeecccc
Q 004259 681 TLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVSFRFH 760 (765)
Q Consensus 681 ~~a~~~e~~s~hPia~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~Gv~~~~~g~~~~vG~~~~ 760 (765)
++|+++|++|+||+|+||+++++++ + ..++++++++||+||+|.++|+++++||++|
T Consensus 438 ~laAalE~~S~HPiA~AIv~~a~~~---------------------~--~~~~~~~~~i~G~Gv~~~v~g~~v~vG~~~~ 494 (713)
T COG2217 438 ALAAALEQHSEHPLAKAIVKAAAER---------------------G--LPDVEDFEEIPGRGVEAEVDGERVLVGNARL 494 (713)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHhc---------------------C--CCCccceeeeccCcEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999876 1 2456679999999999999999999999999
Q ss_pred cc
Q 004259 761 RT 762 (765)
Q Consensus 761 ~~ 762 (765)
|.
T Consensus 495 ~~ 496 (713)
T COG2217 495 LG 496 (713)
T ss_pred Hh
Confidence 85
No 3
>PRK10671 copA copper exporting ATPase; Provisional
Probab=100.00 E-value=3.6e-87 Score=799.36 Aligned_cols=574 Identities=32% Similarity=0.510 Sum_probs=480.9
Q ss_pred eeceeecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCceeEeecC--------
Q 004259 128 IVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSS-------- 199 (765)
Q Consensus 128 ~~~~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~-------- 199 (765)
++..+.|+||+|++|+.+|++++++++||.++.+++. +..+..+ .+.+.+.+.++++||+++.....
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~---~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~ 77 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGT---ASAEALIETIKQAGYDASVSHPKAKPLTESS 77 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEec---CCHHHHHHHHHhcCCcccccccccccccccc
Confidence 3568999999999999999999999999999999995 4455532 47899999999999998863210
Q ss_pred -------------------CcceeEEEEecccchhhhHHHHhhhccCCCceEEEeecCCCeEEEEecCCCCChhhHHHhh
Q 004259 200 -------------------GQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGI 260 (765)
Q Consensus 200 -------------------~~~~~~~~i~gm~c~~ca~~ie~~l~~~~GV~~v~vn~~~~~~~V~ydp~~i~~~~i~~~i 260 (765)
...+.++.+.||+|..|+..+++.+...+||.++++++.+++..+.+ ..+.+++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~---~~s~~~I~~~I 154 (834)
T PRK10671 78 IPSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMG---SASPQDLVQAV 154 (834)
T ss_pred cCchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEc---cCCHHHHHHHH
Confidence 01246788999999999999999999999999999999999988874 24567788888
Q ss_pred hhcCCCcceeEecCccc-cccc-c--chhhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhccCCcchHHHHH-
Q 004259 261 AGRSNGKFQIRVMNPFA-RMTS-R--DSEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLN- 335 (765)
Q Consensus 261 ~~~g~~~~~~~~~~~~~-~~~~-~--~~~e~~~~~~~~~~~lllai~v~i~~m~l~~~~~~~~~~~~~~~~~~~~~~~~- 335 (765)
+..| |......... .... . .+++.+.+.+++..+++++++++++.+...++ ...+.....|+.
T Consensus 155 ~~~G---y~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 222 (834)
T PRK10671 155 EKAG---YGAEAIEDDAKRRERQQETAQATMKRFRWQAIVALAVGIPVMVWGMIGDNM---------MVTADNRSLWLVI 222 (834)
T ss_pred HhcC---CCccccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---------ccCccchhHHHHH
Confidence 8877 4432211100 0000 0 01122334444555555555555443310000 000001123553
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHhhhc-CCCCcchhhhhHHHHHHHHHHHHH
Q 004259 336 WALVSVVQFVIGKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGVVT-GFWSPTYFETSAMLITFVLFGKYL 414 (765)
Q Consensus 336 ~~l~~~v~~~~g~~~~~~a~~~l~~~~~~md~l~~l~~~~a~~~s~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~l 414 (765)
+++++|+++|+|+|||++||++|+++++|||+|+++|+++||+||++.++...+. ....+.||++++++++++++|+|+
T Consensus 223 ~~~~~~~~~~~g~~~~~~a~~~l~~~~~~md~l~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~l 302 (834)
T PRK10671 223 GLITLAVMVFAGGHFYRSAWKSLLNGSATMDTLVALGTGAAWLYSMSVNLWPQWFPMEARHLYYEASAMIIGLINLGHML 302 (834)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999876643211 111245999999999999999999
Q ss_pred HHHHhchHHHHHHHHHhcCCCeEEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccCccEEEEeccceeeccccCCC
Q 004259 415 EILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGE 494 (765)
Q Consensus 415 e~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~g~~~Vdes~LTGE 494 (765)
|.+++.|+.+.+++|.++.|++++++ ++| .+++|++++|+|||+|+|++||+||+||+|++|++.||||+||||
T Consensus 303 e~~~~~~~~~~~~~L~~l~p~~a~~~---~~~---~~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~~g~~~vdeS~lTGE 376 (834)
T PRK10671 303 EARARQRSSKALEKLLDLTPPTARVV---TDE---GEKSVPLADVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGE 376 (834)
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEE---eCC---cEEEEEHHHcCCCCEEEEcCCCEeeeeEEEEEceEEEeehhhcCC
Confidence 99999999999999999999999998 666 678999999999999999999999999999999999999999999
Q ss_pred cceeccCCCCceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004259 495 AVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWY 574 (765)
Q Consensus 495 s~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 574 (765)
|.|+.|++||.||+||+|.+|.+.++|+++|.+|++++|++++++++.+|+++|+++|+++.+|+|++++++++++++|+
T Consensus 377 s~pv~k~~gd~V~aGt~~~~G~~~~~v~~~g~~t~l~~i~~lv~~a~~~k~~~~~~~d~~a~~~v~~v~~~a~~~~~~~~ 456 (834)
T PRK10671 377 PIPQQKGEGDSVHAGTVVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWY 456 (834)
T ss_pred CCCEecCCCCEEEecceecceeEEEEEEEEcCcChHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHHHhhcceEEecchHHhhhcCCcEEEecC
Q 004259 575 VAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDK 654 (765)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~~~~~gilik~~~~le~lg~v~~i~fDK 654 (765)
+.+. ...|..++.+++++|+++|||||++++|+++..++++++|+||++|+++++|+++++|++||||
T Consensus 457 ~~~~------------~~~~~~~~~~a~~vlv~acPcaL~la~p~a~~~~~~~~a~~gilvk~~~~le~l~~v~~v~fDK 524 (834)
T PRK10671 457 FFGP------------APQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTLVFDK 524 (834)
T ss_pred HhCC------------chHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHCCeEEecHHHHHhhcCCCEEEEcC
Confidence 6431 1235678889999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCceEEEEEEecCCCCHHHHHHHHHHHHccCCChHHHHHHHHHHhccCCCCCCCCCCCCCCCcCcCCCCcccCCC
Q 004259 655 TGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVS 734 (765)
Q Consensus 655 TGTLT~g~~~v~~~~~~~~~~~~~~l~~a~~~e~~s~hPia~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (765)
|||||+|+|+|.++...++.++++++.+++++|..|+||+++||+++++.. ..+.++
T Consensus 525 TGTLT~g~~~v~~~~~~~~~~~~~~l~~a~~~e~~s~hp~a~Ai~~~~~~~-----------------------~~~~~~ 581 (834)
T PRK10671 525 TGTLTEGKPQVVAVKTFNGVDEAQALRLAAALEQGSSHPLARAILDKAGDM-----------------------TLPQVN 581 (834)
T ss_pred CCccccCceEEEEEEccCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHhhC-----------------------CCCCcc
Confidence 999999999999998888888889999999999999999999999987643 124567
Q ss_pred ceeeecCCeeEEEEcCeEEEeecccccc
Q 004259 735 DFSALPGRGIQCFISGKQVLVSFRFHRT 762 (765)
Q Consensus 735 ~~~~~~G~Gv~~~~~g~~~~vG~~~~~~ 762 (765)
++++++|+|+++.++|+++++||++|++
T Consensus 582 ~~~~~~g~Gv~~~~~g~~~~~G~~~~~~ 609 (834)
T PRK10671 582 GFRTLRGLGVSGEAEGHALLLGNQALLN 609 (834)
T ss_pred cceEecceEEEEEECCEEEEEeCHHHHH
Confidence 8999999999999999999999999874
No 4
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=100.00 E-value=2.5e-76 Score=692.00 Aligned_cols=477 Identities=28% Similarity=0.422 Sum_probs=405.2
Q ss_pred eeceeecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCceeEeecCCcceeEEE
Q 004259 128 IVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSGQDKILLQ 207 (765)
Q Consensus 128 ~~~~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~ 207 (765)
.+..+.++||+|++|++++|+.+.+.+||.++++++.+++..+.|++.. . +++.+.+++.||++.....
T Consensus 53 ~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~-~-~~I~~aI~~~Gy~a~~~~~--------- 121 (741)
T PRK11033 53 TRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDI-R-AQVESAVQKAGFSLRDEQA--------- 121 (741)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccc-h-HHHHHHHHhcccccccccc---------
Confidence 4567889999999999999999999999999999999999999998763 3 6777888888987642100
Q ss_pred EecccchhhhHHHHhhhccCCCceEEEeecCCCeEEEEecCCCCChhhHHHhhhhcCCCcceeEecCccccccccchhhH
Q 004259 208 VTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNGKFQIRVMNPFARMTSRDSEET 287 (765)
Q Consensus 208 i~gm~c~~ca~~ie~~l~~~~GV~~v~vn~~~~~~~V~ydp~~i~~~~i~~~i~~~g~~~~~~~~~~~~~~~~~~~~~e~ 287 (765)
+. . +.+.
T Consensus 122 ----------------------------------------~~-------------------------------~--~~~~ 128 (741)
T PRK11033 122 ----------------------------------------AA-------------------------------A--APES 128 (741)
T ss_pred ----------------------------------------hh-------------------------------h--hHHH
Confidence 00 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhccCCcchHHHHHHHHHHHHhhhcCHHHHHHHHHHHHcCCC-Chh
Q 004259 288 SNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLNWALVSVVQFVIGKRFYTAAGRALRNGST-NMD 366 (765)
Q Consensus 288 ~~~~~~~~~~lllai~v~i~~m~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~g~~~~~~a~~~l~~~~~-~md 366 (765)
+.++ .... +++...++++++.+..+ . +...|+.+++++ +++|+|||++||+++|++++ |||
T Consensus 129 ~~~~-~~~~-~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~ 190 (741)
T PRK11033 129 RLKS-ENLP-LITLAVMMAISWGLEQF-----------N--HPFGQLAFIATT---LVGLYPIARKALRLIRSGSPFAIE 190 (741)
T ss_pred HHHH-HHHH-HHHHHHHHHHHHHHhhh-----------h--hHHHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCcc
Confidence 1111 1111 11112222222211100 0 111244454443 67899999999999999885 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCC
Q 004259 367 VLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVG 446 (765)
Q Consensus 367 ~l~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g 446 (765)
+|++++++++++++ .| +.++++++++++|+++|.++++|+++.+++|.++.|.+++++ |||
T Consensus 191 ~L~~~a~~~a~~~~---------------~~-~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~a~vi---r~g 251 (741)
T PRK11033 191 TLMSVAAIGALFIG---------------AT-AEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPETATRL---RDG 251 (741)
T ss_pred HHHHHHHHHHHHHc---------------ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEE---ECC
Confidence 99999999887764 23 457889999999999999999999999999999999999999 777
Q ss_pred ceeeeEEeeccCcCCCCEEEEcCCCccCccEEEEeccceeeccccCCCcceeccCCCCceeeeeeeecceEEEEEEEeCC
Q 004259 447 KCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGS 526 (765)
Q Consensus 447 ~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~g~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~ 526 (765)
++++|++++|+|||+|+|++||+||+||+|++|++.||||+|||||.|+.|++||.||+||+|.+|.++++|+++|.
T Consensus 252 ---~~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~g~~~vdes~lTGEs~Pv~k~~Gd~V~aGt~~~~G~~~i~V~~~g~ 328 (741)
T PRK11033 252 ---EREEVAIADLRPGDVIEVAAGGRLPADGKLLSPFASFDESALTGESIPVERATGEKVPAGATSVDRLVTLEVLSEPG 328 (741)
T ss_pred ---EEEEEEHHHCCCCCEEEECCCCEEecceEEEECcEEeecccccCCCCCEecCCCCeeccCCEEcCceEEEEEEeccc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheee
Q 004259 527 DAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVV 606 (765)
Q Consensus 527 ~t~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv 606 (765)
+|++++|.+++++++.+|+|+|+++|+++++|+|+++++++++|++|++.. ..+|..++.+++++|+
T Consensus 329 ~s~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~~~~v~~~a~~~~~~~~~~~-------------~~~~~~~i~~a~svlv 395 (741)
T PRK11033 329 ASAIDRILHLIEEAEERRAPIERFIDRFSRIYTPAIMLVALLVILVPPLLF-------------AAPWQEWIYRGLTLLL 395 (741)
T ss_pred cCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------cCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999885532 1356778899999999
Q ss_pred ecccchhhhhHHHHHHHHHHHHhhcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHH
Q 004259 607 IACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASA 686 (765)
Q Consensus 607 ~~~P~al~la~p~~~~~~~~~~~~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~~a~~~ 686 (765)
++|||+|++++|+++..++.+++|+||++|+++++|+++++|++|||||||||+|+|+|.++.+.++.++++++.+++++
T Consensus 396 iacPcaL~latP~a~~~~l~~aar~gilik~~~alE~l~~v~~v~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~~aa~~ 475 (741)
T PRK11033 396 IGCPCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTTVAFDKTGTLTEGKPQVTDIHPATGISESELLALAAAV 475 (741)
T ss_pred HhchhhhhhhhHHHHHHHHHHHHHCCeEEcCcHHHHHhhCCCEEEEeCCCCCcCCceEEEEEEecCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888889999999999
Q ss_pred HccCCChHHHHHHHHHHhccCCCCCCCCCCCCCCCcCcCCCCcccCCCceeeecCCeeEEEEcCeEEEeecccccc
Q 004259 687 EASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVSFRFHRT 762 (765)
Q Consensus 687 e~~s~hPia~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~Gv~~~~~g~~~~vG~~~~~~ 762 (765)
|+.|+||+++||+++++++ +..++..+++++++|+||++.++|+++.+|+++|++
T Consensus 476 e~~s~hPia~Ai~~~a~~~---------------------~~~~~~~~~~~~~~g~Gv~~~~~g~~~~ig~~~~~~ 530 (741)
T PRK11033 476 EQGSTHPLAQAIVREAQVR---------------------GLAIPEAESQRALAGSGIEGQVNGERVLICAPGKLP 530 (741)
T ss_pred hcCCCCHHHHHHHHHHHhc---------------------CCCCCCCcceEEEeeEEEEEEECCEEEEEecchhhh
Confidence 9999999999999999876 223455678999999999999999999999999873
No 5
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=100.00 E-value=9.8e-72 Score=636.62 Aligned_cols=370 Identities=54% Similarity=0.835 Sum_probs=342.9
Q ss_pred cCHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHhhhcC-CCCcchhhhhHHHHHHHHHHHHHHHHHhchHHH
Q 004259 346 IGKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGVVTG-FWSPTYFETSAMLITFVLFGKYLEILAKGKTSD 424 (765)
Q Consensus 346 ~g~~~~~~a~~~l~~~~~~md~l~~l~~~~a~~~s~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~le~~~~~k~~~ 424 (765)
+|+|||++||+++++|++|||+|++++++++|+||++.++.+.... .....||++++++++++++|+++|.++++|+++
T Consensus 1 ~g~~~~~~a~~~l~~~~~~md~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le~~~~~~a~~ 80 (562)
T TIGR01511 1 AGRPFYKSAWKALRHKAPNMDTLIALGTTVAYGYSLVALLANQVLTGLHVHTFFDASAMLITFILLGRWLEMLAKGRASD 80 (562)
T ss_pred CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999887643211 122479999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccCccEEEEeccceeeccccCCCcceeccCCCC
Q 004259 425 AIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINS 504 (765)
Q Consensus 425 ~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~g~~~Vdes~LTGEs~pv~k~~g~ 504 (765)
.+++|.++.|.++++++ ++| .+++|++++|+|||+|+|++||+|||||+|++|++.||||+|||||.|+.|++||
T Consensus 81 ~~~~L~~~~p~~a~~~~--~~~---~~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~gd 155 (562)
T TIGR01511 81 ALSKLAKLQPSTATLLT--KDG---SIEEVPVALLQPGDIVKVLPGEKIPVDGTVIEGESEVDESLVTGESLPVPKKVGD 155 (562)
T ss_pred HHHHHHhcCCCEEEEEE--CCC---eEEEEEHHHCCCCCEEEECCCCEecCceEEEECceEEehHhhcCCCCcEEcCCCC
Confidence 99999999999999983 234 5689999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 004259 505 PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPE 584 (765)
Q Consensus 505 ~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~ 584 (765)
.||+||+|.+|.++++|+++|.+|+++++.+++++++.+|+|+|+++|+++++|+|++++++++++++|.
T Consensus 156 ~V~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~v~~a~~~k~~~~~~~d~~a~~~~~~v~~~a~~~~~~~~---------- 225 (562)
T TIGR01511 156 PVIAGTVNGTGSLVVRATATGEDTTLAQIVRLVRQAQQSKAPIQRLADKVAGYFVPVVIAIALITFVIWL---------- 225 (562)
T ss_pred EEEeeeEECCceEEEEEEEecCCChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999888764
Q ss_pred cccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHHHhhcceEEecchHHhhhcCCcEEEecCCCccccCceE
Q 004259 585 QWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRAT 664 (765)
Q Consensus 585 ~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~~~~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~ 664 (765)
.++.+++++|+++|||||++++|+++..++++++|+||++|+++++|.++++|++|||||||||+|+|+
T Consensus 226 -----------~~~~~~~svlvvacPcaL~la~p~a~~~~~~~aa~~gIlik~~~~lE~l~~v~~i~fDKTGTLT~g~~~ 294 (562)
T TIGR01511 226 -----------FALEFAVTVLIIACPCALGLATPTVIAVATGLAAKNGVLIKDGDALERAANIDTVVFDKTGTLTQGKPT 294 (562)
T ss_pred -----------HHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHCCeEEcChHHHHHhhCCCEEEECCCCCCcCCCEE
Confidence 256789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHHHHHHHHHccCCChHHHHHHHHHHhccCCCCCCCCCCCCCCCcCcCCCCcccCCCceeeecCCee
Q 004259 665 VTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGI 744 (765)
Q Consensus 665 v~~~~~~~~~~~~~~l~~a~~~e~~s~hPia~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~Gv 744 (765)
+.++.+.++.++++++++++++|++|+||+++||+++++++ +....+++++++++|+|+
T Consensus 295 v~~i~~~~~~~~~~~l~~aa~~e~~s~HPia~Ai~~~~~~~---------------------~~~~~~~~~~~~~~g~Gi 353 (562)
T TIGR01511 295 VTDVHVFGDRDRTELLALAAALEAGSEHPLAKAIVSYAKEK---------------------GITLVEVSDFKAIPGIGV 353 (562)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhccCCChHHHHHHHHHHhc---------------------CCCcCCCCCeEEECCceE
Confidence 99999888888899999999999999999999999999765 112234678999999999
Q ss_pred EEEEcCeEEEeecccccc
Q 004259 745 QCFISGKQVLVSFRFHRT 762 (765)
Q Consensus 745 ~~~~~g~~~~vG~~~~~~ 762 (765)
++.++|+++++||++|++
T Consensus 354 ~~~~~g~~~~iG~~~~~~ 371 (562)
T TIGR01511 354 EGTVEGTKIQLGNEKLLG 371 (562)
T ss_pred EEEECCEEEEEECHHHHH
Confidence 999999999999999973
No 6
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=100.00 E-value=2.9e-59 Score=535.91 Aligned_cols=337 Identities=46% Similarity=0.714 Sum_probs=311.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecC
Q 004259 365 MDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDK 444 (765)
Q Consensus 365 md~l~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~ 444 (765)
||+|++++++.+|++|.+ ..+.+++++++++++++.++++|+++.+++|.++.|.+++++ |
T Consensus 1 ~d~l~~~~~~~~~~~~~~----------------~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~---r 61 (556)
T TIGR01525 1 MDLLMALATIAAYAMGLV----------------LEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVL---Q 61 (556)
T ss_pred CcHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE---E
Confidence 899999999999988732 356789999999999999999999999999999999999999 5
Q ss_pred C-CceeeeEEeeccCcCCCCEEEEcCCCccCccEEEEeccceeeccccCCCcceeccCCCCceeeeeeeecceEEEEEEE
Q 004259 445 V-GKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATK 523 (765)
Q Consensus 445 ~-g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~g~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~ 523 (765)
+ | ++++|++++|+|||+|.+++||+|||||+|++|++.||||+|||||.|+.|.+|+.||+||.+.+|.++++|++
T Consensus 62 ~~g---~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~vi~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~g~~~~~v~~ 138 (556)
T TIGR01525 62 GDG---SEEEVPVEELQVGDIVIVRPGERIPVDGVVISGESEVDESALTGESMPVEKKEGDEVFAGTINGDGSLTIRVTK 138 (556)
T ss_pred CCC---eEEEEEHHHCCCCCEEEECCCCEeccceEEEecceEEeehhccCCCCCEecCCcCEEeeceEECCceEEEEEEE
Confidence 5 4 57889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhh
Q 004259 524 VGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSIS 603 (765)
Q Consensus 524 ~g~~t~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 603 (765)
+|.+|+++++.+++++++.+++++++.+++++.+|++++++++++++++|++... + .++.++++
T Consensus 139 ~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~a~~~~~~~~~~~~--------------~--~~~~~~~~ 202 (556)
T TIGR01525 139 LGEDSTLAQIVKLVEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVWLALGA--------------L--GALYRALA 202 (556)
T ss_pred ecccCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------c--hHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998876431 1 67889999
Q ss_pred eeeecccchhhhhHHHHHHHHHHHHhhcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEecCCCC--HHHHHH
Q 004259 604 VVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMD--RGEFLT 681 (765)
Q Consensus 604 vlv~~~P~al~la~p~~~~~~~~~~~~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~~~--~~~~l~ 681 (765)
+++++|||+|++++|+++..++.+++++|+++|+++++|.++++|++|||||||||+|+|+|.++.+.++.+ ++++++
T Consensus 203 vlv~~~P~al~l~~~~~~~~~~~~~~~~gilvk~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~l~ 282 (556)
T TIGR01525 203 VLVVACPCALGLATPVAILVAIGVAARRGILIKGGDALEKLAKVKTVVFDKTGTLTTGKPTVVDVEPLDDASISEEELLA 282 (556)
T ss_pred HHhhccccchhehhHHHHHHHHHHHHHCCceecCchHHHHhhcCCEEEEeCCCCCcCCceEEEEEEecCCCCccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998877665 788999
Q ss_pred HHHHHHccCCChHHHHHHHHHHhccCCCCCCCCCCCCCCCcCcCCCCcccCCC-ceeeecCCeeEEEEcC-eEEEeeccc
Q 004259 682 LVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVS-DFSALPGRGIQCFISG-KQVLVSFRF 759 (765)
Q Consensus 682 ~a~~~e~~s~hPia~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~Gv~~~~~g-~~~~vG~~~ 759 (765)
+++++|+.+.||+++||++++++.. ..... . ++++++|+|+++.++| .++++||++
T Consensus 283 ~a~~~e~~~~hp~~~Ai~~~~~~~~---------------------~~~~~-~~~~~~~~~~gi~~~~~g~~~~~lg~~~ 340 (556)
T TIGR01525 283 LAAALEQSSSHPLARAIVRYAKKRG---------------------LELPK-QEDVEEVPGKGVEATVDGQEEVRIGNPR 340 (556)
T ss_pred HHHHHhccCCChHHHHHHHHHHhcC---------------------CCccc-ccCeeEecCCeEEEEECCeeEEEEecHH
Confidence 9999999999999999999998651 11111 3 6788999999999999 899999999
Q ss_pred cc
Q 004259 760 HR 761 (765)
Q Consensus 760 ~~ 761 (765)
|+
T Consensus 341 ~~ 342 (556)
T TIGR01525 341 LL 342 (556)
T ss_pred HH
Confidence 87
No 7
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=100.00 E-value=1.8e-59 Score=534.01 Aligned_cols=330 Identities=41% Similarity=0.632 Sum_probs=306.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecC
Q 004259 365 MDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDK 444 (765)
Q Consensus 365 md~l~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~ 444 (765)
||+|+++++..+|+++ .||+. ++++++++++++++.++++|+.+.+++|.++.|.+++++ |
T Consensus 1 ~~~l~~~a~~~~~~~~---------------~~~~~-~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~---r 61 (536)
T TIGR01512 1 VDLLMALAALGAVAIG---------------EYLEG-ALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVL---R 61 (536)
T ss_pred CcHHHHHHHHHHHHHh---------------hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE---E
Confidence 7999999999888764 36665 778889999999999999999999999999999999999 7
Q ss_pred CCceeeeEEeeccCcCCCCEEEEcCCCccCccEEEEeccceeeccccCCCcceeccCCCCceeeeeeeecceEEEEEEEe
Q 004259 445 VGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKV 524 (765)
Q Consensus 445 ~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~g~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~ 524 (765)
|| +++++++++|+|||+|.+++||+|||||+|++|++.||||+|||||.|+.|++|+.||+||.+.+|.++++|+++
T Consensus 62 ~g---~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~ii~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~G~~~~~V~~~ 138 (536)
T TIGR01512 62 GG---SLEEVAVEELKVGDVVVVKPGERVPVDGVVLSGTSTVDESALTGESVPVEKAPGDEVFAGAINLDGVLTIVVTKL 138 (536)
T ss_pred CC---EEEEEEHHHCCCCCEEEEcCCCEeecceEEEeCcEEEEecccCCCCCcEEeCCCCEEEeeeEECCceEEEEEEEe
Confidence 77 778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhhe
Q 004259 525 GSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISV 604 (765)
Q Consensus 525 g~~t~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 604 (765)
|.+|++|++.+++++++.+++|+|+.+++++.+|+|++++++++.+++|++.. .+..++.+++++
T Consensus 139 g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~sv 203 (536)
T TIGR01512 139 PADSTIAKIVNLVEEAQSRKAKTQRFIDRFARYYTPVVLAIALAIWLVPGLLK---------------RWPFWVYRALVL 203 (536)
T ss_pred ccccHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------ccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888876532 122378889999
Q ss_pred eeecccchhhhhHHHHHHHHHHHHhhcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHH
Q 004259 605 VVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVA 684 (765)
Q Consensus 605 lv~~~P~al~la~p~~~~~~~~~~~~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~~a~ 684 (765)
++++|||+|++++|+++..++.+++|+||++|+++++|+++++|++|||||||||+|+|++.++.+ .+++++++
T Consensus 204 lv~~~P~aL~la~~~~~~~~~~~~~k~gilik~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~------~~~l~~a~ 277 (536)
T TIGR01512 204 LVVASPCALVISAPAAYLSAISAAARHGILIKGGAALEALAKIKTVAFDKTGTLTTGRPKVVDVVP------AEVLRLAA 277 (536)
T ss_pred HhhcCccccccchHHHHHHHHHHHHHCCeEEcCcHHHHhhcCCCEEEECCCCCCcCCceEEEEeeH------HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999864 37999999
Q ss_pred HHHccCCChHHHHHHHHHHhccCCCCCCCCCCCCCCCcCcCCCCcccCCCceeeecCCeeEEEEcCeEEEeecccccc
Q 004259 685 SAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVSFRFHRT 762 (765)
Q Consensus 685 ~~e~~s~hPia~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~Gv~~~~~g~~~~vG~~~~~~ 762 (765)
++|+.+.||+++||+++++++ + +++++++++|+|+++.++|.++++|+++|++
T Consensus 278 ~~e~~~~hp~~~Ai~~~~~~~---------------------~----~~~~~~~~~g~gi~~~~~g~~~~ig~~~~~~ 330 (536)
T TIGR01512 278 AAEQASSHPLARAIVDYARKR---------------------E----NVESVEEVPGEGVRAVVDGGEVRIGNPRSLE 330 (536)
T ss_pred HHhccCCCcHHHHHHHHHHhc---------------------C----CCcceEEecCCeEEEEECCeEEEEcCHHHHh
Confidence 999999999999999998765 1 3467889999999999999999999999874
No 8
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=2.8e-52 Score=490.74 Aligned_cols=326 Identities=19% Similarity=0.295 Sum_probs=283.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccCcc
Q 004259 397 YFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPAD 476 (765)
Q Consensus 397 ~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~D 476 (765)
|.+ +++++++++++..++.++++|+++.+++|.++.|.+++|+ ||| ++++|++++|+|||+|.+++||+||||
T Consensus 55 ~~~-~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~---Rdg---~~~~I~~~~Lv~GDiV~l~~Gd~IPaD 127 (755)
T TIGR01647 55 WVD-FVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKARVL---RDG---KWQEIPASELVPGDVVRLKIGDIVPAD 127 (755)
T ss_pred hhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE---ECC---EEEEEEhhhCcCCCEEEECCCCEEece
Confidence 444 4566677778888999999999999999999999999999 788 789999999999999999999999999
Q ss_pred EEEEecc-ceeeccccCCCcceeccCCCCceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhccCCChhHHHHHHHH
Q 004259 477 GIVVWGT-SYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVA 555 (765)
Q Consensus 477 g~vl~g~-~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~~~~~~~~~ 555 (765)
|+|++|+ ..||||+|||||.|+.|.+||.+|+||.+.+|.++++|+++|.+|++|+|.+++++++.+++|+|+.+++++
T Consensus 128 g~vi~g~~~~VDeS~LTGES~PV~K~~~~~v~aGT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~~~~~~~~lq~~~~~i~ 207 (755)
T TIGR01647 128 CRLFEGDYIQVDQAALTGESLPVTKKTGDIAYSGSTVKQGEAEAVVTATGMNTFFGKAAALVQSTETGSGHLQKILSKIG 207 (755)
T ss_pred EEEEecCceEEEcccccCCccceEeccCCeeeccCEEEccEEEEEEEEcCCccHHHHHHHHhhccCCCCCcHHHHHHHHH
Confidence 9999998 789999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHHHhhcceEE
Q 004259 556 SIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLI 635 (765)
Q Consensus 556 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~~~~~gili 635 (765)
.++++++++++++.+++|++.. ..+|..++.+++++++++|||+|++++|+++..+..+++|+|+++
T Consensus 208 ~~~~~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak~gilv 274 (755)
T TIGR01647 208 LFLIVLIGVLVLIELVVLFFGR-------------GESFREGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKKKAIV 274 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhCCeEE
Confidence 9999999999988888776521 135788899999999999999999999999999999999999999
Q ss_pred ecchHHhhhcCCcEEEecCCCccccCceEEEEEEecCC-CCHHHHHHHHHHH-HccCCChHHHHHHHHHHhccCCCCCCC
Q 004259 636 KGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-MDRGEFLTLVASA-EASSEHPLAKAVVEYARHFHFFDDPSL 713 (765)
Q Consensus 636 k~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~-~~~~~~l~~a~~~-e~~s~hPia~Ai~~~~~~~~~~~~~~~ 713 (765)
|+++++|.+|.+|++|||||||||+|+|+|.+++..++ .++++++.+++.+ +..+.||+++||++++++...
T Consensus 275 k~l~alE~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~l~~a~~~~~~~~~~pi~~Ai~~~~~~~~~------ 348 (755)
T TIGR01647 275 TRLTAIEELAGMDILCSDKTGTLTLNKLSIDEILPFFNGFDKDDVLLYAALASREEDQDAIDTAVLGSAKDLKE------ 348 (755)
T ss_pred cccHHHHhccCCcEEEecCCCccccCceEEEEEEecCCCCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhHH------
Confidence 99999999999999999999999999999999988654 6788888888766 578999999999998865310
Q ss_pred CCCCCCCCcCcCCCCcccCCCceee--ecCCeeEEEEc----CeEE--Eeeccccc
Q 004259 714 NPDGQSHSKESTGSGWLLDVSDFSA--LPGRGIQCFIS----GKQV--LVSFRFHR 761 (765)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~G~Gv~~~~~----g~~~--~vG~~~~~ 761 (765)
. ....+..+... ..++|+++.++ |+.+ ..|+++++
T Consensus 349 ----~---------~~~~~~~~~~pf~~~~k~~~~~v~~~~~g~~~~~~kGa~e~i 391 (755)
T TIGR01647 349 ----A---------RDGYKVLEFVPFDPVDKRTEATVEDPETGKRFKVTKGAPQVI 391 (755)
T ss_pred ----H---------HhcCceEEEeccCCCCCeEEEEEEeCCCceEEEEEeCChHHH
Confidence 0 00011111111 25889998883 6554 45998876
No 9
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=100.00 E-value=2.8e-51 Score=465.69 Aligned_cols=328 Identities=23% Similarity=0.304 Sum_probs=270.8
Q ss_pred chhhhhHH--HHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCe-EEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCc
Q 004259 396 TYFETSAM--LITFVLFGKYLEILAKGKTSDAIKKLVELAPAT-ALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTK 472 (765)
Q Consensus 396 ~~~~~~~~--li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~-~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~ 472 (765)
.||+..+. +++.+++++++|.++++|+++.+++|.++.|++ +++++ +|| ++++|++++|++||+|.|++||+
T Consensus 63 ~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a~vlr--~dg---~~~~V~~~~L~~GDiV~V~~Gd~ 137 (675)
T TIGR01497 63 ALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFAKLLR--DDG---AIDKVPADQLKKGDIVLVEAGDV 137 (675)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEe--eCC---EEEEEEHHHCCCCCEEEECCCCE
Confidence 46765433 333468999999999999999999999998874 77763 367 77899999999999999999999
Q ss_pred cCccEEEEeccceeeccccCCCcceeccCCCCc---eeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhccCCChhHH
Q 004259 473 LPADGIVVWGTSYVNESMVTGEAVPVLKEINSP---VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQK 549 (765)
Q Consensus 473 iP~Dg~vl~g~~~Vdes~LTGEs~pv~k~~g~~---v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~~~ 549 (765)
||+||+|++|++.||||+|||||.|+.|++|+. ||+||.+.+|++.++|+++|.+|+++++.+++++++.+|+|+|.
T Consensus 138 IPaDG~vieG~~~VDESaLTGES~PV~K~~g~~~~~V~aGT~v~~G~~~i~Vt~~g~~S~lgri~~lve~a~~~ktplq~ 217 (675)
T TIGR01497 138 IPCDGEVIEGVASVDESAITGESAPVIKESGGDFASVTGGTRILSDWLVVECTANPGETFLDRMIALVEGAQRRKTPNEI 217 (675)
T ss_pred EeeeEEEEEccEEEEcccccCCCCceeecCCCCcceeecCcEEEeeEEEEEEEEecccCHHHHHHHHHHhcccCCChHHH
Confidence 999999999999999999999999999999985 99999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHHHh
Q 004259 550 FADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGA 629 (765)
Q Consensus 550 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~~~ 629 (765)
..+.+..++. ++++++. +++|.+..+ .....++...+++++++|||+|+...|.....++.+++
T Consensus 218 ~l~~l~~~l~-~v~li~~--~~~~~~~~~-------------~~~~~~~~~lvallV~aiP~aLg~l~~av~iag~~r~a 281 (675)
T TIGR01497 218 ALTILLIALT-LVFLLVT--ATLWPFAAY-------------GGNAISVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVL 281 (675)
T ss_pred HHHHHHHHHH-HHHHHHH--HHHHHHHHh-------------cChhHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHH
Confidence 7666654443 3332222 233332111 01123567778999999999999998988889999999
Q ss_pred hcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHHHccCCChHHHHHHHHHHhccCCC
Q 004259 630 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFD 709 (765)
Q Consensus 630 ~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~~a~~~e~~s~hPia~Ai~~~~~~~~~~~ 709 (765)
|+|+++|+++++|.+|++|++|||||||||+|+|+++++++.++.+.++++++++.+|..++||+++||++++++.+
T Consensus 282 r~gvLvK~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~aa~~~~~s~hP~a~Aiv~~a~~~~--- 358 (675)
T TIGR01497 282 GFNVIATSGRAVEACGDVDTLLLDKTGTITLGNRLASEFIPAQGVDEKTLADAAQLASLADDTPEGKSIVILAKQLG--- 358 (675)
T ss_pred HCCeEeeCcHHHHHhhCCCEEEECCCCcccCCCeEEEEEEecCCCcHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC---
Confidence 99999999999999999999999999999999999999998878888899999999999999999999999987651
Q ss_pred CCCCCCCCCCCCcCcCCCCcccCCCceeeecCC-eeEEE--EcCeEEEeeccccc
Q 004259 710 DPSLNPDGQSHSKESTGSGWLLDVSDFSALPGR-GIQCF--ISGKQVLVSFRFHR 761 (765)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-Gv~~~--~~g~~~~vG~~~~~ 761 (765)
.++. .. ..+..++.+.+|+ |+++. .+|+.++.|+++++
T Consensus 359 ---~~~~----------~~-~~~~~~~~pf~~~~~~sg~~~~~g~~~~kGa~e~i 399 (675)
T TIGR01497 359 ---IRED----------DV-QSLHATFVEFTAQTRMSGINLDNGRMIRKGAVDAI 399 (675)
T ss_pred ---CCcc----------cc-ccccceEEEEcCCCcEEEEEEeCCeEEEECCHHHH
Confidence 0000 00 0123456777776 68775 48899999998554
No 10
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=9.2e-51 Score=462.62 Aligned_cols=324 Identities=22% Similarity=0.278 Sum_probs=267.1
Q ss_pred hHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCC-eEEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccCccEEE
Q 004259 401 SAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPA-TALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIV 479 (765)
Q Consensus 401 ~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~-~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~v 479 (765)
..++++.++++.++|.++++|+++.+++|.++.|+ +++++ |+|. .+++|++++|++||+|.+++||+||+||+|
T Consensus 69 ~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~vi---r~g~--~~~~V~~~eL~~GDiV~v~~Gd~IPaDG~v 143 (679)
T PRK01122 69 TLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARKL---REPG--AAEEVPATELRKGDIVLVEAGEIIPADGEV 143 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEE---ECCC--EEEEEEHHHcCCCCEEEEcCCCEEEEEEEE
Confidence 34555566899999999999999999999999986 68888 6661 378899999999999999999999999999
Q ss_pred EeccceeeccccCCCcceeccCCCCc---eeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhccCCChhHHHHHHHHH
Q 004259 480 VWGTSYVNESMVTGEAVPVLKEINSP---VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVAS 556 (765)
Q Consensus 480 l~g~~~Vdes~LTGEs~pv~k~~g~~---v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~~~~~~~~~~ 556 (765)
++|.+.||||+|||||.|+.|++|+. ||+||.+.+|+++++|+++|.+|+++++.+++++++.+|+|+|...+.+..
T Consensus 144 ieG~a~VDESaLTGES~PV~K~~G~~~~~V~aGT~v~~G~~~i~Vta~g~~S~lgki~~lve~a~~~ktp~e~al~~l~~ 223 (679)
T PRK01122 144 IEGVASVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWIVIRITANPGESFLDRMIALVEGAKRQKTPNEIALTILLA 223 (679)
T ss_pred EEccEEEEcccccCCCCceEeCCCCccCeEEeceEEEeeeEEEEEEEecccCHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 99999999999999999999999998 999999999999999999999999999999999999999999987777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHHHhhcceEEe
Q 004259 557 IFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIK 636 (765)
Q Consensus 557 ~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~~~~~gilik 636 (765)
++..+++++.+..+.++++.+ .. .++..++++++++|||+++..+|.....++.+++|+|+++|
T Consensus 224 ~l~~i~l~~~~~~~~~~~~~g--------------~~--~~l~~~iallV~aiP~alg~l~~~i~i~g~~r~ak~gvLvk 287 (679)
T PRK01122 224 GLTIIFLLVVATLPPFAAYSG--------------GA--LSITVLVALLVCLIPTTIGGLLSAIGIAGMDRVLQANVIAT 287 (679)
T ss_pred hhhHHHHHHHHHHHHHHHHhC--------------ch--HHHHHHHHHHHHcccchhhhHHHHHHHHHHHHHhcCCeeec
Confidence 555433332222222111111 12 26778899999999999999999999999999999999999
Q ss_pred cchHHhhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHHHccCCChHHHHHHHHHHhccCCCCCCCCCC
Q 004259 637 GGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPD 716 (765)
Q Consensus 637 ~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~~a~~~e~~s~hPia~Ai~~~~~~~~~~~~~~~~~~ 716 (765)
+++++|.+|++|++|||||||||+|+|+++++++.++.++++++.+++.+|..++||+++||++++++.. + ...
T Consensus 288 ~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~a~~~s~~s~hP~~~AIv~~a~~~~--~---~~~- 361 (679)
T PRK01122 288 SGRAVEAAGDVDTLLLDKTGTITLGNRQASEFLPVPGVTEEELADAAQLSSLADETPEGRSIVVLAKQRF--N---LRE- 361 (679)
T ss_pred CchHHHHhcCCCEEEEeCCCCCcCCcEEEEEEEeCCCCCHHHHHHHHHHhcCCCCCchHHHHHHHHHhhc--C---CCc-
Confidence 9999999999999999999999999999999998888888899999999999999999999999987631 0 000
Q ss_pred CCCCCcCcCCCCcccCCCceeeecC-CeeEEE-EcCeEEEeeccccc
Q 004259 717 GQSHSKESTGSGWLLDVSDFSALPG-RGIQCF-ISGKQVLVSFRFHR 761 (765)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~G-~Gv~~~-~~g~~~~vG~~~~~ 761 (765)
. ... .+..++....+ +|.++. ++|+.++.|+++++
T Consensus 362 ----~-----~~~-~~~~~~~pF~s~~~~~gv~~~g~~~~kGa~e~i 398 (679)
T PRK01122 362 ----R-----DLQ-SLHATFVPFSAQTRMSGVDLDGREIRKGAVDAI 398 (679)
T ss_pred ----h-----hhc-cccceeEeecCcCceEEEEECCEEEEECCHHHH
Confidence 0 000 01122223333 355554 68899999998643
No 11
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=1.8e-49 Score=451.59 Aligned_cols=315 Identities=22% Similarity=0.315 Sum_probs=255.3
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHhcCCC-eEEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccCccEEEEeccce
Q 004259 407 FVLFGKYLEILAKGKTSDAIKKLVELAPA-TALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSY 485 (765)
Q Consensus 407 ~~~~~~~le~~~~~k~~~~l~~l~~~~~~-~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~g~~~ 485 (765)
..+++.++|.++++|+++++++|.++.|+ +++++. ||| ++++|++++|+|||+|.|++||+||+||+|++|.+.
T Consensus 75 ~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~~v~--rdg---~~~~I~a~eLv~GDiV~v~~Gd~IPaDG~vieG~~~ 149 (673)
T PRK14010 75 TLVFANFSEALAEGRGKAQANALRQTQTEMKARRIK--QDG---SYEMIDASDLKKGHIVRVATGEQIPNDGKVIKGLAT 149 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEE--eCC---EEEEEEHHHcCCCCEEEECCCCcccCCeEEEEcceE
Confidence 34689999999999999999999999986 786443 677 788999999999999999999999999999999999
Q ss_pred eeccccCCCcceeccCCC---CceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 004259 486 VNESMVTGEAVPVLKEIN---SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIV 562 (765)
Q Consensus 486 Vdes~LTGEs~pv~k~~g---~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 562 (765)
||||+|||||.|+.|++| +.||+||.+.+|+++++|+++|.+|+++|+.+++++++.+|+|+|.....+. ..
T Consensus 150 VDESaLTGES~PV~K~~g~d~~~V~aGT~v~~G~~~i~Vta~g~~T~lgki~~lve~a~~~ktp~e~~l~~l~-----~~ 224 (673)
T PRK14010 150 VDESAITGESAPVIKESGGDFDNVIGGTSVASDWLEVEITSEPGHSFLDKMIGLVEGATRKKTPNEIALFTLL-----MT 224 (673)
T ss_pred EecchhcCCCCceeccCCCccCeeecCceeecceEEEEEEEecccCHHHHHHHHHhhccccCCHHHHHHHHHH-----HH
Confidence 999999999999999999 8899999999999999999999999999999999999999999985544332 22
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHHHhhcceEEecchHHh
Q 004259 563 VTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALE 642 (765)
Q Consensus 563 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~~~~~gilik~~~~le 642 (765)
+.+.++++++|++.... + .++...+...+++++.++||+|+..+|+....++.+++|+|+++|+++++|
T Consensus 225 l~ii~l~~~~~~~~~~~------~-----~~~~~~~~~~val~V~~IP~aL~~~~~~~~~~g~~r~ak~gvLvk~~~avE 293 (673)
T PRK14010 225 LTIIFLVVILTMYPLAK------F-----LNFNLSIAMLIALAVCLIPTTIGGLLSAIGIAGMDRVTQFNILAKSGRSVE 293 (673)
T ss_pred HhHHHHHHHHHHHHHHh------h-----ccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCEEEeCcHHHH
Confidence 22222233333221000 0 123345556666777788999999999999999999999999999999999
Q ss_pred hhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHHHccCCChHHHHHHHHHHhccCCCCCCCCCCCCCCCc
Q 004259 643 RAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSK 722 (765)
Q Consensus 643 ~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~~a~~~e~~s~hPia~Ai~~~~~~~~~~~~~~~~~~~~~~~~ 722 (765)
.+|++|++|||||||||+|++.+.++.+.++.+.++++++++.++..++||+++||++++++.+. ....
T Consensus 294 ~lg~v~vI~~DKTGTLT~Gn~~~~~~~~~~~~~~~~ll~~a~~~~~~s~~P~~~AIv~~a~~~~~-----------~~~~ 362 (673)
T PRK14010 294 TCGDVNVLILDKTGTITYGNRMADAFIPVKSSSFERLVKAAYESSIADDTPEGRSIVKLAYKQHI-----------DLPQ 362 (673)
T ss_pred HhhCCCEEEEeCCCcCCCCCeEEEEEEeCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHcCC-----------Cchh
Confidence 99999999999999999999999888777777778899998899999999999999999876520 0000
Q ss_pred CcCCCCcccCCCceee-ecCCeeEEEEcCeEEEeeccccc
Q 004259 723 ESTGSGWLLDVSDFSA-LPGRGIQCFISGKQVLVSFRFHR 761 (765)
Q Consensus 723 ~~~~~~~~~~~~~~~~-~~G~Gv~~~~~g~~~~vG~~~~~ 761 (765)
...+...|.. ..+.|+. ++|++++.|+++++
T Consensus 363 ------~~~~~~pF~~~~k~~gv~--~~g~~i~kGa~~~i 394 (673)
T PRK14010 363 ------EVGEYIPFTAETRMSGVK--FTTREVYKGAPNSM 394 (673)
T ss_pred ------hhcceeccccccceeEEE--ECCEEEEECCHHHH
Confidence 0001111221 2356664 78889999999876
No 12
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=2.2e-48 Score=463.35 Aligned_cols=285 Identities=19% Similarity=0.246 Sum_probs=255.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecC------CCceeeeEEeeccCcCCCCEEEEcCCCcc
Q 004259 400 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDK------VGKCIEEREIDALLIQSGDTLKVLPGTKL 473 (765)
Q Consensus 400 ~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~------~g~~~~~~~i~~~~l~~GDiv~v~~Ge~i 473 (765)
.+++++++++++.++..++++|+++++++|.++.+.+++|+ | || ++++|++++|+|||+|.+++||+|
T Consensus 90 ~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~~~~V~---R~~~~~~dg---~~~~I~~~eLv~GDiV~l~~Gd~V 163 (867)
T TIGR01524 90 ATVIIALMVLASGLLGFIQESRAERAAYALKNMVKNTATVL---RVINENGNG---SMDEVPIDALVPGDLIELAAGDII 163 (867)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCeeEEE---EecccCCCC---eEEEEEhhcCCCCCEEEECCCCEE
Confidence 35666777788889999999999999999999999999998 5 67 789999999999999999999999
Q ss_pred CccEEEEeccc-eeeccccCCCcceeccCCCC-------------ceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHH
Q 004259 474 PADGIVVWGTS-YVNESMVTGEAVPVLKEINS-------------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVET 539 (765)
Q Consensus 474 P~Dg~vl~g~~-~Vdes~LTGEs~pv~k~~g~-------------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~ 539 (765)
||||+|++|+. .||||+|||||.|+.|.+|+ .+|+||.+.+|.++++|++||.+|.+|++.+++++
T Consensus 164 PaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~~~V~~tG~~T~~gki~~~v~~ 243 (867)
T TIGR01524 164 PADARVISARDLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATGSSTWFGSLAIAATE 243 (867)
T ss_pred cccEEEEecCceEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEEEEEEEEEcCccHHHHHHHHhhC
Confidence 99999999986 79999999999999998875 69999999999999999999999999999999988
Q ss_pred hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHH
Q 004259 540 AQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPT 619 (765)
Q Consensus 540 ~~~~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~ 619 (765)
...++|+|+.++++++++.+++++++++++++|++.. .+|..++.+++++++++|||+|++++++
T Consensus 244 -~~~~t~lq~~~~~i~~~~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~~~al~l~v~~iP~~Lp~~vt~ 308 (867)
T TIGR01524 244 -RRGQTAFDKGVKSVSKLLIRFMLVMVPVVLMINGLMK--------------GDWLEAFLFALAVAVGLTPEMLPMIVSS 308 (867)
T ss_pred -CCCCCcHHHHHHHHHHHHHHHHHHHHHHheehHHHhc--------------CCHHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 7778999999999999999999988888777665431 3577889999999999999999999999
Q ss_pred HHHHHHHHHhhcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHH---HHccCCChHHH
Q 004259 620 AVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVAS---AEASSEHPLAK 696 (765)
Q Consensus 620 ~~~~~~~~~~~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~~a~~---~e~~s~hPia~ 696 (765)
++..+..+++|+|+++|+++++|.+|++|+||||||||||+|+|+|.+++..++.+.++++.+++. .+..+.||+++
T Consensus 309 ~la~g~~~mak~~ilvk~l~aiE~lg~v~vic~DKTGTLT~~~m~v~~~~~~~~~~~~~~l~~a~l~~~~~~~~~~p~~~ 388 (867)
T TIGR01524 309 NLAKGAINMSKKKVIVKELSAIQNFGAMDILCTDKTGTLTQDKIELEKHIDSSGETSERVLKMAWLNSYFQTGWKNVLDH 388 (867)
T ss_pred HHHHHHHHHHhCCcEEccchhhhhccCccEEEecCCCccccCeEEEEEEecCCCCCHHHHHHHHHHhCCCCCCCCChHHH
Confidence 999999999999999999999999999999999999999999999999976666666778877653 23346899999
Q ss_pred HHHHHHHhc
Q 004259 697 AVVEYARHF 705 (765)
Q Consensus 697 Ai~~~~~~~ 705 (765)
|+++++.+.
T Consensus 389 Al~~~~~~~ 397 (867)
T TIGR01524 389 AVLAKLDES 397 (867)
T ss_pred HHHHHHHhh
Confidence 999988643
No 13
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=100.00 E-value=1e-48 Score=444.62 Aligned_cols=302 Identities=30% Similarity=0.443 Sum_probs=271.7
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHh--cCCCeEEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccCccEEEEec
Q 004259 405 ITFVLFGKYLEILAKGKTSDAIKKLVE--LAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWG 482 (765)
Q Consensus 405 i~~~~~~~~le~~~~~k~~~~l~~l~~--~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~g 482 (765)
+++++++.+++.++++++.+.+++|.+ +.|++++++ |+| +++|++++|+|||+|.+++||+|||||+|++|
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~---r~g----~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g 75 (499)
T TIGR01494 3 LILVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVL---RNG----WKEIPASDLVPGDIVLVKSGEIVPADGVLLSG 75 (499)
T ss_pred EEhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEE---ECC----eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEc
Confidence 356678999999999999999999998 899999998 665 57899999999999999999999999999999
Q ss_pred cceeeccccCCCcceeccCCCCceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhccCCChhHHHHHHHH-HHHHHH
Q 004259 483 TSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVA-SIFVPI 561 (765)
Q Consensus 483 ~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~~~~~~~~~-~~~~~~ 561 (765)
.+.||||+|||||.|+.|.+|+.+++||.+.+|.++++|+++|.+|..+++..++++++..|+++++..+++. .+|+++
T Consensus 76 ~~~vdes~LTGEs~pv~k~~g~~v~~gs~~~~G~~~~~v~~~~~~s~~~~i~~~v~~~~~~k~~~~~~~~~~~~~~~~~~ 155 (499)
T TIGR01494 76 SCFVDESNLTGESVPVLKTAGDAVFAGTYVFNGTLIVVVSATGPNTFGGKIAVVVYTGFETKTPLQPKLDRLSDIIFILF 155 (499)
T ss_pred cEEEEcccccCCCCCeeeccCCccccCcEEeccEEEEEEEEeccccHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988999999999999 899999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHHHhhcceEEecchHH
Q 004259 562 VVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDAL 641 (765)
Q Consensus 562 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~~~~~gilik~~~~l 641 (765)
+++++++++++|++.... ..+|..++.+++++++++|||+|++++|+++..+..+++++|+++|+++.+
T Consensus 156 ~~~la~~~~~~~~~~~~~-----------~~~~~~~~~~~~~vl~~~~P~aL~~~~~~~~~~~~~~~~~~gilvk~~~~l 224 (499)
T TIGR01494 156 VLLIALAVFLFWAIGLWD-----------PNSIFKIFLRALILLVIAIPIALPLAVTIALAVGDARLAKKGIVVRSLNAL 224 (499)
T ss_pred HHHHHHHHHHHHHHHHcc-----------cccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHCCcEEechhhh
Confidence 999999998888654210 014778899999999999999999999999999999999999999999999
Q ss_pred hhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHHHccCCChHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 004259 642 ERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHS 721 (765)
Q Consensus 642 e~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~~a~~~e~~s~hPia~Ai~~~~~~~~~~~~~~~~~~~~~~~ 721 (765)
|+||++|++|||||||||+|+|+|.++++.+. |..++||+++||++++++..
T Consensus 225 E~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~-------------~~~s~hp~~~ai~~~~~~~~--------------- 276 (499)
T TIGR01494 225 EELGKVDYICSDKTGTLTKNEMSFKKVSVLGG-------------EYLSGHPDERALVKSAKWKI--------------- 276 (499)
T ss_pred hhccCCcEEEeeCCCccccCceEEEEEEecCC-------------CcCCCChHHHHHHHHhhhcC---------------
Confidence 99999999999999999999999999986543 57899999999999987541
Q ss_pred cCcCCCCcccCCCceeeecCCeeEEEEcC--eEEEeecccccc
Q 004259 722 KESTGSGWLLDVSDFSALPGRGIQCFISG--KQVLVSFRFHRT 762 (765)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~G~Gv~~~~~g--~~~~vG~~~~~~ 762 (765)
....+++..+ +|+++.+++ +++.+|+++++.
T Consensus 277 ---------~~~~~f~~~~-~~~~~~~~~~~~~~~~G~~~~i~ 309 (499)
T TIGR01494 277 ---------LNVFEFSSVR-KRMSVIVRGPDGTYVKGAPEFVL 309 (499)
T ss_pred ---------cceeccCCCC-ceEEEEEecCCcEEEeCCHHHHH
Confidence 1223566677 799998875 689999998873
No 14
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=9.3e-48 Score=457.62 Aligned_cols=289 Identities=20% Similarity=0.226 Sum_probs=257.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCCce---eeeEEeeccCcCCCCEEEEcCCCccCcc
Q 004259 400 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKC---IEEREIDALLIQSGDTLKVLPGTKLPAD 476 (765)
Q Consensus 400 ~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~---~~~~~i~~~~l~~GDiv~v~~Ge~iP~D 476 (765)
.+++++++++++.+++.++++|+.+.+++|.++.|.+++|+ |||+. .++++|++++|+|||+|.|++||+||||
T Consensus 124 ~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~~a~Vi---R~g~~~~~g~~~~I~~~eLvpGDiV~l~~Gd~IPaD 200 (902)
T PRK10517 124 AAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVL---RVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPAD 200 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE---ECCccCCCCeEEEEEHHhCCCCCEEEECCCCEEeee
Confidence 45677788889999999999999999999999999999999 55210 1678999999999999999999999999
Q ss_pred EEEEeccc-eeeccccCCCcceeccCCCC-------------ceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhcc
Q 004259 477 GIVVWGTS-YVNESMVTGEAVPVLKEINS-------------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQM 542 (765)
Q Consensus 477 g~vl~g~~-~Vdes~LTGEs~pv~k~~g~-------------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~ 542 (765)
|+|++|+. .||||+|||||.|+.|.+|+ .+|+||.+.+|.++++|++||.+|.+|+|.+++++++.
T Consensus 201 g~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~vV~atG~~T~~GkI~~~v~~~~~ 280 (902)
T PRK10517 201 LRILQARDLFVAQASLTGESLPVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTAQAVVIATGANTWFGQLAGRVSEQDS 280 (902)
T ss_pred EEEEEcCceEEEecCcCCCCCceecccccccccccCccccccceeeCceEeeeeEEEEEEEeccccHHHHHHHHhhccCC
Confidence 99999986 69999999999999998874 69999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHH
Q 004259 543 SKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVM 622 (765)
Q Consensus 543 ~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~ 622 (765)
+++|+|+.+|++++++++++++++.++++++.+.. .+|..++.+++++++++|||+|++++++++.
T Consensus 281 ~~t~lq~~~~~i~~~l~~~~~~~~~~v~~i~~~~~--------------~~~~~~l~~alsv~V~~~Pe~LP~~vt~~la 346 (902)
T PRK10517 281 EPNAFQQGISRVSWLLIRFMLVMAPVVLLINGYTK--------------GDWWEAALFALSVAVGLTPEMLPMIVTSTLA 346 (902)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhc--------------CCHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99999999999999999988888887776654431 3577889999999999999999999999999
Q ss_pred HHHHHHhhcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHH---HccCCChHHHHHH
Q 004259 623 VATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASA---EASSEHPLAKAVV 699 (765)
Q Consensus 623 ~~~~~~~~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~~a~~~---e~~s~hPia~Ai~ 699 (765)
.+..+++|+|+++|+++++|++|++|+||||||||||+|+|+|.++....+.+.++++++++.. +..+.||++.|++
T Consensus 347 ~g~~~mak~~ilVk~l~aiE~lg~v~vic~DKTGTLT~n~m~V~~~~~~~~~~~~~ll~~a~l~~~~~~~~~~p~d~All 426 (902)
T PRK10517 347 RGAVKLSKQKVIVKRLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDISGKTSERVLHSAWLNSHYQTGLKNLLDTAVL 426 (902)
T ss_pred HHHHHHHhCCcEEecchhhhhccCCCEEEecCCCccccceEEEEEEecCCCCCHHHHHHHHHhcCCcCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999998655555667788776642 2346899999999
Q ss_pred HHHHhc
Q 004259 700 EYARHF 705 (765)
Q Consensus 700 ~~~~~~ 705 (765)
+++...
T Consensus 427 ~~a~~~ 432 (902)
T PRK10517 427 EGVDEE 432 (902)
T ss_pred HHHHhc
Confidence 988643
No 15
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=2.5e-47 Score=454.80 Aligned_cols=327 Identities=19% Similarity=0.230 Sum_probs=270.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCCc---eeeeEEeeccCcCCCCEEEEcCCCc
Q 004259 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGK---CIEEREIDALLIQSGDTLKVLPGTK 472 (765)
Q Consensus 396 ~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~---~~~~~~i~~~~l~~GDiv~v~~Ge~ 472 (765)
.|.+ +++++++++++.+++.++++|+.+++++|.++.|.+++|+ |||+ ..++++|++++|+|||+|.|++||+
T Consensus 110 ~~~~-~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~---Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~ 185 (903)
T PRK15122 110 DLTG-VIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVL---RRGHAGAEPVRREIPMRELVPGDIVHLSAGDM 185 (903)
T ss_pred cHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEE---ECCccCCCCeEEEEEHHHCCCCCEEEECCCCE
Confidence 3444 5667777888999999999999999999999999999998 4421 0167899999999999999999999
Q ss_pred cCccEEEEeccc-eeeccccCCCcceeccCC-----------------------CCceeeeeeeecceEEEEEEEeCCcc
Q 004259 473 LPADGIVVWGTS-YVNESMVTGEAVPVLKEI-----------------------NSPVIGGTINLHGVLHIQATKVGSDA 528 (765)
Q Consensus 473 iP~Dg~vl~g~~-~Vdes~LTGEs~pv~k~~-----------------------g~~v~aGt~~~~g~~~~~v~~~g~~t 528 (765)
|||||+|++|.. .||||+|||||.|+.|.+ +|.+|+||.+.+|.++++|+++|.+|
T Consensus 186 IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T 265 (903)
T PRK15122 186 IPADVRLIESRDLFISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRT 265 (903)
T ss_pred EeeeEEEEEcCceEEEccccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEecccc
Confidence 999999999986 699999999999999975 36899999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeec
Q 004259 529 VLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIA 608 (765)
Q Consensus 529 ~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~ 608 (765)
++|+|.+++++ ...++|+++..+++.+++..+.+.++.+.+++.++. ..+|..++.+++++++++
T Consensus 266 ~~gkI~~~v~~-~~~~t~l~~~l~~i~~~l~~~~~~~~~~v~~~~~~~--------------~~~~~~~l~~aisl~V~~ 330 (903)
T PRK15122 266 YFGSLAKSIVG-TRAQTAFDRGVNSVSWLLIRFMLVMVPVVLLINGFT--------------KGDWLEALLFALAVAVGL 330 (903)
T ss_pred HhhHHHHHhcC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--------------cCCHHHHHHHHHHHHHHH
Confidence 99999999987 556789999999999887776665555544432221 135778899999999999
Q ss_pred ccchhhhhHHHHHHHHHHHHhhcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHH--
Q 004259 609 CPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASA-- 686 (765)
Q Consensus 609 ~P~al~la~p~~~~~~~~~~~~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~~a~~~-- 686 (765)
|||+|++++++++..+..+++|+|+++|+.+++|.||++|+||||||||||+|+|+|.+++..++.++++++++++..
T Consensus 331 ~Pe~Lp~~vt~~La~g~~~mak~~ilVk~l~avE~Lg~v~vIc~DKTGTLT~~~m~V~~~~~~~~~~~~~~l~~a~l~s~ 410 (903)
T PRK15122 331 TPEMLPMIVSSNLAKGAIAMARRKVVVKRLNAIQNFGAMDVLCTDKTGTLTQDRIILEHHLDVSGRKDERVLQLAWLNSF 410 (903)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCeecccchhhhhcCCcEEEecCCcccccCeEEEEEEEcCCCCChHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999876666667788776532
Q ss_pred -HccCCChHHHHHHHHHHhccCCCCCCCCCCCCCCCcCcCCCCcccCCCceeeecCCeeEEEE-------cCeEEEe--e
Q 004259 687 -EASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFI-------SGKQVLV--S 756 (765)
Q Consensus 687 -e~~s~hPia~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~Gv~~~~-------~g~~~~v--G 756 (765)
+..+.||+++||++++.+.. .. ........++++|+.|.+... +|+.+.+ |
T Consensus 411 ~~~~~~~p~e~All~~a~~~~-----------~~--------~~~~~~~~~~~~pF~s~~k~ms~v~~~~~~~~~~~~KG 471 (903)
T PRK15122 411 HQSGMKNLMDQAVVAFAEGNP-----------EI--------VKPAGYRKVDELPFDFVRRRLSVVVEDAQGQHLLICKG 471 (903)
T ss_pred CCCCCCChHHHHHHHHHHHcC-----------ch--------hhhhcCceEEEeeeCCCcCEEEEEEEcCCCcEEEEECC
Confidence 34568999999999987651 00 001234567788888776543 5666666 7
Q ss_pred cccc
Q 004259 757 FRFH 760 (765)
Q Consensus 757 ~~~~ 760 (765)
+++.
T Consensus 472 a~e~ 475 (903)
T PRK15122 472 AVEE 475 (903)
T ss_pred cHHH
Confidence 7653
No 16
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=2.9e-46 Score=447.98 Aligned_cols=249 Identities=20% Similarity=0.273 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccCccEEEEecc
Q 004259 404 LITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGT 483 (765)
Q Consensus 404 li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~g~ 483 (765)
+++++++.-.+..++++|+++.+++|.++.|.+++|+ ||| ++++|++++|+|||+|.+++||+|||||+|++|+
T Consensus 86 i~~~i~~~~~i~~~qe~~a~~~l~~L~~l~~~~~~Vi---Rdg---~~~~I~~~eLv~GDiv~l~~Gd~IPaDg~ii~g~ 159 (884)
T TIGR01522 86 ITLAILIVVTVGFVQEYRSEKSLEALNKLVPPECHLI---REG---KLEHVLASTLVPGDLVCLSVGDRVPADLRIVEAV 159 (884)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEE---ECC---EEEEEEHHHCccCCEEEecCCCEEeeeEEEEEcC
Confidence 3333444445666667788899999999999999999 788 7899999999999999999999999999999996
Q ss_pred -ceeeccccCCCcceeccCCCC--------------ceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhccCCChhH
Q 004259 484 -SYVNESMVTGEAVPVLKEINS--------------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQ 548 (765)
Q Consensus 484 -~~Vdes~LTGEs~pv~k~~g~--------------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~~ 548 (765)
..||||+|||||.|+.|.+|+ .+|+||.+.+|.++++|+++|.+|.+|++.+++++++..++|+|
T Consensus 160 ~l~VDES~LTGES~pv~K~~~~~~~~~~~~~~~~~n~v~~GT~v~~G~~~~~V~~tG~~T~~gki~~~v~~~~~~kt~lq 239 (884)
T TIGR01522 160 DLSIDESNLTGETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVVGTGSNTEFGAVFKMMQAIEKPKTPLQ 239 (884)
T ss_pred ceEEEcccccCCCcceecccccccccccccccccCceEEeCCEEEeeeEEEEEEEecCccHHHHHHHHhccCCCCCCcHH
Confidence 679999999999999998864 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHHH
Q 004259 549 KFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVG 628 (765)
Q Consensus 549 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~~ 628 (765)
+.+++++.++++++++++++.++++++. +.+|..++.+++++++++|||+|++++|+++..+..++
T Consensus 240 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~v~llv~aiP~~Lp~~vt~~l~~~~~r~ 305 (884)
T TIGR01522 240 KSMDLLGKQLSLVSFGVIGVICLVGWFQ--------------GKDWLEMFTISVSLAVAAIPEGLPIIVTVTLALGVLRM 305 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------cCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 9999999999887766655555443332 13577889999999999999999999999999999999
Q ss_pred hhcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEecC
Q 004259 629 ANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFT 672 (765)
Q Consensus 629 ~~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~ 672 (765)
+|+|+++|+.+++|.||++++||||||||||+|+|+|.+++..+
T Consensus 306 ak~~ilvk~~~a~E~Lg~v~~Ic~DKTGTLT~n~m~v~~i~~~~ 349 (884)
T TIGR01522 306 SKKRAIVRKLPSVETLGSVNVICSDKTGTLTKNHMTVTKIWTSD 349 (884)
T ss_pred hhcCCcccchHHHHhccCccEEEecCccccccCeEEEEEEEecC
Confidence 99999999999999999999999999999999999999997643
No 17
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=9.3e-44 Score=428.98 Aligned_cols=269 Identities=21% Similarity=0.286 Sum_probs=225.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhc-CCCeEEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccC
Q 004259 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVEL-APATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLP 474 (765)
Q Consensus 396 ~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~-~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP 474 (765)
.|++. .++++.+++.-.+..++.+++++.+++|.+. .+.+++|+ ||| ++++|++++|+|||+|.|++||+||
T Consensus 127 ~~~~~-~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~Vi---RdG---~~~~I~~~~Lv~GDiV~l~~Gd~IP 199 (941)
T TIGR01517 127 GWIEG-VAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVI---RGG---QEQQISIHDIVVGDIVSLSTGDVVP 199 (941)
T ss_pred chHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEE---ECC---EEEEEeHHHCCCCCEEEECCCCEec
Confidence 34443 3333444444456666666777777777654 46788988 788 7899999999999999999999999
Q ss_pred ccEEEEec-cceeeccccCCCcceeccCCCCc--eeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhccCCChhHHHH
Q 004259 475 ADGIVVWG-TSYVNESMVTGEAVPVLKEINSP--VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFA 551 (765)
Q Consensus 475 ~Dg~vl~g-~~~Vdes~LTGEs~pv~k~~g~~--v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~~~~~ 551 (765)
|||+|++| .+.||||+|||||.|+.|.+|+. +|+||.+.+|.+.++|+++|.+|.+|++.+++++++ .++|+++.+
T Consensus 200 aD~~li~g~~l~VdES~LTGES~pv~K~~~~~n~v~~GT~v~~G~~~~iV~~tG~~T~~gki~~~~~~~~-~~t~l~~~~ 278 (941)
T TIGR01517 200 ADGVFISGLSLEIDESSITGESDPIKKGAPKDSFLLSGTVVNEGSGRMLVTAVGVNSFGGKLMMELRAEG-EDTPLQEKL 278 (941)
T ss_pred ccEEEEEcCcEEEEecccCCCCCcccccCCCCceEEeCCeEEeeEEEEEEEEeCCCcHHHHHHHhhccCC-CCCcHHHHH
Confidence 99999999 78899999999999999998876 999999999999999999999999999999998866 678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc--ccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHHHh
Q 004259 552 DFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQ--WLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGA 629 (765)
Q Consensus 552 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~~~ 629 (765)
++++.++.+++++++++.+++|++.......... .......++..++.+++++++++|||+|++++|+++..++.+++
T Consensus 279 ~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~llv~~iP~~Lp~~vti~l~~~~~~ma 358 (941)
T TIGR01517 279 SELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHFIIAVTIVVVAVPEGLPLAVTIALAYSMKKMM 358 (941)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999988888877542211110000 00001235778899999999999999999999999999999999
Q ss_pred hcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEecC
Q 004259 630 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFT 672 (765)
Q Consensus 630 ~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~ 672 (765)
|+|+++|+++++|.||++++||||||||||+|+|+|.+++..+
T Consensus 359 k~~ilvk~l~a~E~lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~ 401 (941)
T TIGR01517 359 KDNNLVRHLAACETMGSATAICSDKTGTLTQNVMSVVQGYIGE 401 (941)
T ss_pred hCCCEEechHHhhhccCceEEEEcCcCceeeceEEEEEEEEec
Confidence 9999999999999999999999999999999999999987643
No 18
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=100.00 E-value=1.3e-42 Score=419.98 Aligned_cols=253 Identities=24% Similarity=0.317 Sum_probs=232.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccCccE
Q 004259 398 FETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADG 477 (765)
Q Consensus 398 ~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg 477 (765)
|..++++++++++...+..+++.|+.+.+++|.++.|.+++|+ ||| ++++|++++|+|||+|.|++||+|||||
T Consensus 104 ~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~Vi---Rdg---~~~~I~~~~lv~GDiv~l~~Gd~IPaD~ 177 (997)
T TIGR01106 104 LYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVI---RDG---EKMSINAEQVVVGDLVEVKGGDRIPADL 177 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEE---ECC---EEEEeeHHHCCCCCEEEECCCCEEeeeE
Confidence 3345566777778888999999999999999999999999999 788 7899999999999999999999999999
Q ss_pred EEEecc-ceeeccccCCCcceeccCCCC----------ceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhccCCCh
Q 004259 478 IVVWGT-SYVNESMVTGEAVPVLKEINS----------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAP 546 (765)
Q Consensus 478 ~vl~g~-~~Vdes~LTGEs~pv~k~~g~----------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~ 546 (765)
++++|+ +.||||+|||||.|+.|.+++ .+|+||.+.+|.+.++|++||.+|.+|++.+++++.+.+++|
T Consensus 178 ~il~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~p 257 (997)
T TIGR01106 178 RIISAQGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRIASLASGLENGKTP 257 (997)
T ss_pred EEEEccCcEEEccccCCCCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhHHHhhhhhcccCCCc
Confidence 999997 579999999999999998764 699999999999999999999999999999999998888999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHH
Q 004259 547 IQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATG 626 (765)
Q Consensus 547 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~ 626 (765)
+++..++++.++++++++++++.+++|++.+ .+|..++.+++++++++|||+|++++++++..+..
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~i~v~v~~iP~~L~~~v~i~l~~~~~ 323 (997)
T TIGR01106 258 IAIEIEHFIHIITGVAVFLGVSFFILSLILG--------------YTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAK 323 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Confidence 9999999999999999888888777765432 24667888899999999999999999999999999
Q ss_pred HHhhcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEe
Q 004259 627 VGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKV 670 (765)
Q Consensus 627 ~~~~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~ 670 (765)
+++++|+++|+++++|+||++++||||||||||+|+|+|.+++.
T Consensus 324 ~m~~~~ilvk~~~aiE~lg~v~~ic~DKTGTLT~n~m~v~~~~~ 367 (997)
T TIGR01106 324 RMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWF 367 (997)
T ss_pred HHHHCCcEecCcHHHHHhcCCCEEEECCCCceecCceEEEEEEE
Confidence 99999999999999999999999999999999999999999874
No 19
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=100.00 E-value=2e-42 Score=415.80 Aligned_cols=265 Identities=20% Similarity=0.288 Sum_probs=231.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccCc
Q 004259 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPA 475 (765)
Q Consensus 396 ~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~ 475 (765)
.|++ +.++++++++.-.+..++++|+++.+++|.++.|.+++|+ ||| ++++|++++|+|||+|.+++||+|||
T Consensus 35 ~~~~-~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~Vi---Rdg---~~~~I~~~~Lv~GDiv~l~~Gd~IPa 107 (917)
T TIGR01116 35 AFVE-PFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVL---RDG---RWSVIKAKDLVPGDIVELAVGDKVPA 107 (917)
T ss_pred cHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE---ECC---EEEEEEHHHCCCCCEEEECCCCEeec
Confidence 4554 4566667777888899999999999999999999999999 788 78999999999999999999999999
Q ss_pred cEEEEecc-ceeeccccCCCcceeccCCC-------------CceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhc
Q 004259 476 DGIVVWGT-SYVNESMVTGEAVPVLKEIN-------------SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQ 541 (765)
Q Consensus 476 Dg~vl~g~-~~Vdes~LTGEs~pv~k~~g-------------~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~ 541 (765)
||++++|+ +.||||+|||||.|+.|.++ +.+|+||.+.+|.+.++|++||.+|.+|++.+++++.+
T Consensus 108 D~~ll~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~n~l~~GT~v~~G~~~~~V~~tG~~T~~gki~~~~~~~~ 187 (917)
T TIGR01116 108 DIRVLSLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGMSTEIGKIRDEMRAAE 187 (917)
T ss_pred cEEEEEecceEEEcccccCCCCcccccccccCccccCcccccceeeeCCEEecceEEEEEEEeCCCCHHHHHHHHhhccC
Confidence 99999996 67999999999999999775 78999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHH
Q 004259 542 MSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAV 621 (765)
Q Consensus 542 ~~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~ 621 (765)
.+++|+|+.+++++.++++++++++++.++++............|. ..+...+..++++++++|||+|++++++++
T Consensus 188 ~~~t~lq~~l~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~l~v~~iP~~Lp~~vti~l 263 (917)
T TIGR01116 188 QEDTPLQKKLDEFGELLSKVIGLICILVWVINIGHFNDPALGGGWI----QGAIYYFKIAVALAVAAIPEGLPAVITTCL 263 (917)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhH----HHHHHHHHHHHhhhhhccccccHHHHHHHH
Confidence 9999999999999999998888877777665532211000011111 134456667889999999999999999999
Q ss_pred HHHHHHHhhcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEec
Q 004259 622 MVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVF 671 (765)
Q Consensus 622 ~~~~~~~~~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~ 671 (765)
+.+..+++++|+++|+++++|+||++++||||||||||+|+|+|.+++..
T Consensus 264 ~~~~~~m~~~~ilvk~~~~iE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~ 313 (917)
T TIGR01116 264 ALGTRKMAKKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVCKVVAL 313 (917)
T ss_pred HHHHHHHHHCCcEecCcHHHHhccCceEEEecCCccccCCeEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999764
No 20
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-41 Score=399.58 Aligned_cols=283 Identities=22% Similarity=0.336 Sum_probs=244.2
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccCccEEEEecc
Q 004259 404 LITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGT 483 (765)
Q Consensus 404 li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~g~ 483 (765)
+.+++++.-.+..++..|+.+.+++|.++.+.+++|+ ||| ++++|++++|+|||+|.+++||+||||+++++++
T Consensus 109 I~~~i~~n~~~g~~qe~~a~~~l~~lk~~~~~~~~V~---R~g---~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~ 182 (917)
T COG0474 109 ILLVVVINALLGFVQEYRAEKALEALKKMSSPKAKVL---RDG---KFVEIPASELVPGDIVLLEAGDVVPADLRLLESS 182 (917)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEE---eCC---cEEEecHHHCCCCcEEEECCCCccccceEEEEec
Confidence 3444444555556667788888888888889999999 788 8899999999999999999999999999999999
Q ss_pred c-eeeccccCCCcceeccC--------------CCCceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhccCCChhH
Q 004259 484 S-YVNESMVTGEAVPVLKE--------------INSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQ 548 (765)
Q Consensus 484 ~-~Vdes~LTGEs~pv~k~--------------~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~~ 548 (765)
+ .||||+|||||.|+.|. ..+.+|+||.+.+|.+.+.|++||.+|.+|++.+++......++|+|
T Consensus 183 ~l~VdEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~~~~t~l~ 262 (917)
T COG0474 183 DLEVDESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKKEVKTPLQ 262 (917)
T ss_pred CceEEcccccCCCcchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhccccccCCcHH
Confidence 9 69999999999999994 35889999999999999999999999999999999998877899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHHH
Q 004259 549 KFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVG 628 (765)
Q Consensus 549 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~~ 628 (765)
+..+++..++..+.++++++++++.++.+. .+|..++.+++++++.++|.+|++.+.++++.+..++
T Consensus 263 ~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~l~va~IPegLp~~vti~la~g~~~m 329 (917)
T COG0474 263 RKLNKLGKFLLVLALVLGALVFVVGLFRGG-------------NGLLESFLTALALAVAAVPEGLPAVVTIALALGAQRM 329 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999888887654321 2378899999999999999999999999999999999
Q ss_pred hhcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEecC-C--CC------HH---HHHHHH---HHHHcc----
Q 004259 629 ANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFT-K--MD------RG---EFLTLV---ASAEAS---- 689 (765)
Q Consensus 629 ~~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~-~--~~------~~---~~l~~a---~~~e~~---- 689 (765)
+++++++|+++++|.||++++||+|||||||+|+|+|.+++..+ . .+ .. +++..+ ......
T Consensus 330 ak~~~ivr~l~avE~LG~v~vICsDKTGTLTqN~M~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lc~~~~~~~~~~ 409 (917)
T COG0474 330 AKDNAIVRSLNAIETLGSVDVICSDKTGTLTQNKMTVKKIYINGGGKDIDDKDLKDSPALLRFLLAAALCNSVTPEKNGW 409 (917)
T ss_pred HhccchhhccchhhhccCccEEEecCCCCCccCeEEEEEEEeCCCcccccccccccchHHHHHHHHHHhcCcccccccCc
Confidence 99999999999999999999999999999999999999999884 2 11 01 122211 112222
Q ss_pred --CCChHHHHHHHHHHhc
Q 004259 690 --SEHPLAKAVVEYARHF 705 (765)
Q Consensus 690 --s~hPia~Ai~~~~~~~ 705 (765)
..+|...||++++.+.
T Consensus 410 ~~~gdptE~Al~~~a~~~ 427 (917)
T COG0474 410 YQAGDPTEGALVEFAEKL 427 (917)
T ss_pred eecCCccHHHHHHHHHhc
Confidence 5699999999999875
No 21
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=100.00 E-value=2.4e-40 Score=403.07 Aligned_cols=287 Identities=21% Similarity=0.250 Sum_probs=234.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCCceeeeEEeeccCcCCCCEEEEc--CCCcc
Q 004259 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVL--PGTKL 473 (765)
Q Consensus 396 ~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~--~Ge~i 473 (765)
.||..++++++++++...+..++++|+.+.++++.. .+..++|+ ||| ++++|++++|+|||+|.++ +|++|
T Consensus 191 ~~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~-~~~~v~V~---Rdg---~~~~I~s~eLvpGDiv~l~~~~g~~i 263 (1054)
T TIGR01657 191 EYYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH-KPQSVIVI---RNG---KWVTIASDELVPGDIVSIPRPEEKTM 263 (1054)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCeeEEEE---ECC---EEEEEEcccCCCCCEEEEecCCCCEe
Confidence 455567777788888999999999999999988765 46788898 788 7899999999999999999 99999
Q ss_pred CccEEEEeccceeeccccCCCcceeccCCC------------------Cceeeeeeeec-------ceEEEEEEEeCCcc
Q 004259 474 PADGIVVWGTSYVNESMVTGEAVPVLKEIN------------------SPVIGGTINLH-------GVLHIQATKVGSDA 528 (765)
Q Consensus 474 P~Dg~vl~g~~~Vdes~LTGEs~pv~k~~g------------------~~v~aGt~~~~-------g~~~~~v~~~g~~t 528 (765)
||||+|++|++.||||+|||||.|+.|.+. +.+|+||.+.+ |.+.++|++||.+|
T Consensus 264 PaD~~ll~g~~~VdES~LTGES~Pv~K~~~~~~~~~~~~~~~~~~~~~~~lf~GT~v~~~~~~~g~g~~~~vV~~TG~~T 343 (1054)
T TIGR01657 264 PCDSVLLSGSCIVNESMLTGESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFST 343 (1054)
T ss_pred cceEEEEeCcEEEecccccCCccceecccCCccccccccccccccccceEEEcCCEEEEEecCCCCCcEEEEEEeCCccc
Confidence 999999999999999999999999999752 24999999984 78999999999999
Q ss_pred hHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeec
Q 004259 529 VLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIA 608 (765)
Q Consensus 529 ~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~ 608 (765)
..|++.+.+......++++++...++..+ +++++++.++++++.+... +.++...+.+++++++++
T Consensus 344 ~~G~i~~~i~~~~~~~~~~~~~~~~~~~~----l~~~a~i~~i~~~~~~~~~----------~~~~~~~~l~~l~iiv~~ 409 (1054)
T TIGR01657 344 SKGQLVRSILYPKPRVFKFYKDSFKFILF----LAVLALIGFIYTIIELIKD----------GRPLGKIILRSLDIITIV 409 (1054)
T ss_pred cchHHHHHhhCCCCCCCchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHc----------CCcHHHHHHHHHHHHHhh
Confidence 99999999988777778887776665443 3344444443333222111 236778899999999999
Q ss_pred ccchhhhhHHHHHHHHHHHHhhcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEecCCCC-------------
Q 004259 609 CPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMD------------- 675 (765)
Q Consensus 609 ~P~al~la~p~~~~~~~~~~~~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~~~------------- 675 (765)
+|++|++++++++..++.+++|+||+||++.++|.+|++|++|||||||||+|+|.|.+++..++..
T Consensus 410 vP~~LP~~~ti~l~~~~~rL~k~~il~~~~~~ie~lG~v~vicfDKTGTLTen~m~v~~v~~~~~~~~~~~~~~~~~~~~ 489 (1054)
T TIGR01657 410 VPPALPAELSIGINNSLARLKKKGIFCTSPFRINFAGKIDVCCFDKTGTLTEDGLDLRGVQGLSGNQEFLKIVTEDSSLK 489 (1054)
T ss_pred cCchHHHHHHHHHHHHHHHHHHCCEEEcCcccceecceeeEEEEcCCCCCccCCeeEEeEecccCccccccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999998753210
Q ss_pred HHHHHHHHHHHH-------ccCCChHHHHHHHHHH
Q 004259 676 RGEFLTLVASAE-------ASSEHPLAKAVVEYAR 703 (765)
Q Consensus 676 ~~~~l~~a~~~e-------~~s~hPia~Ai~~~~~ 703 (765)
...++...+... ....+|+..|+++++.
T Consensus 490 ~~~~~~~~a~C~~~~~~~~~~~Gdp~E~al~~~~~ 524 (1054)
T TIGR01657 490 PSITHKALATCHSLTKLEGKLVGDPLDKKMFEATG 524 (1054)
T ss_pred chHHHHHHHhCCeeEEECCEEecCHHHHHHHHhCC
Confidence 112222222221 2347999999999764
No 22
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=3.7e-40 Score=397.49 Aligned_cols=249 Identities=18% Similarity=0.253 Sum_probs=220.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccCccEEE
Q 004259 400 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIV 479 (765)
Q Consensus 400 ~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~v 479 (765)
.++++++++++.-.+..++++|+++++++|.++.+.+++|+ ||| ++++|++++|+|||+|.+++||+|||||+|
T Consensus 83 ~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~~~~Vi---Rdg---~~~~I~a~eLVpGDIv~L~~Gd~VPAD~rL 156 (1053)
T TIGR01523 83 EGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVI---RNG---KSDAIDSHDLVPGDICLLKTGDTIPADLRL 156 (1053)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE---eCC---eeeecCHhhCCCCCEEEECCCCEeeccEEE
Confidence 35677777788889999999999999999999999999999 888 789999999999999999999999999999
Q ss_pred Eecc-ceeeccccCCCcceeccCCC---------------CceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhcc-
Q 004259 480 VWGT-SYVNESMVTGEAVPVLKEIN---------------SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQM- 542 (765)
Q Consensus 480 l~g~-~~Vdes~LTGEs~pv~k~~g---------------~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~- 542 (765)
++++ ..||||+|||||.||.|.+. +.+|+||.+.+|.+.++|++||.+|.+|+|.+++.+...
T Consensus 157 i~~~~L~VDES~LTGES~pV~K~~~~~~~~~~~~~~~d~~n~lf~GT~V~~G~g~~vVvatG~~T~~GkIa~~~~~~~~~ 236 (1053)
T TIGR01523 157 IETKNFDTDEALLTGESLPVIKDAHATFGKEEDTPIGDRINLAFSSSAVTKGRAKGICIATALNSEIGAIAAGLQGDGGL 236 (1053)
T ss_pred EEeCceEEEchhhcCCCCceeccccccccccccCCcccCCCccccCceEEeeeEEEEEEEecCccHHHHHHHHHhhhhhc
Confidence 9986 45999999999999999642 568999999999999999999999999999999865431
Q ss_pred ----------------------------------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccC
Q 004259 543 ----------------------------------SKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLP 588 (765)
Q Consensus 543 ----------------------------------~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 588 (765)
.++|+|+..++++.++..+.++++++.+++..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpLq~~l~~l~~~l~~i~~~~~~~~~~~~~~~------------ 304 (1053)
T TIGR01523 237 FQRPEKDDPNKRRKLNKWILKVTKKVTGAFLGLNVGTPLHRKLSKLAVILFCIAIIFAIIVMAAHKFD------------ 304 (1053)
T ss_pred cccccccccccchhhhcccccccccchhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------
Confidence 2489999999999988777777776665532210
Q ss_pred CCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHHHhhcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEE
Q 004259 589 ENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTA 668 (765)
Q Consensus 589 ~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~~~~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~ 668 (765)
.+...+.+++++++.++|.+|++.+.++++.+..+|+++++++|+.+++|+||.+++||+|||||||+|+|+|+++
T Consensus 305 ----~~~~~~~~av~l~Va~VPegLp~~vti~La~g~~rMak~~~lVr~L~avEtLG~vtvICsDKTGTLT~N~M~V~~i 380 (1053)
T TIGR01523 305 ----VDKEVAIYAICLAISIIPESLIAVLSITMAMGAANMSKRNVIVRKLDALEALGAVNDICSDKTGTITQGKMIARQI 380 (1053)
T ss_pred ----hhHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCCEeccchhhhhccCccEEEecCcCccccceEEEEEE
Confidence 1234566788999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ee
Q 004259 669 KV 670 (765)
Q Consensus 669 ~~ 670 (765)
+.
T Consensus 381 ~~ 382 (1053)
T TIGR01523 381 WI 382 (1053)
T ss_pred EE
Confidence 64
No 23
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.9e-41 Score=366.95 Aligned_cols=263 Identities=22% Similarity=0.331 Sum_probs=226.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccCcc
Q 004259 397 YFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPAD 476 (765)
Q Consensus 397 ~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~D 476 (765)
+|+.+..+.+.+++.-....++++|+.+++++|.++.|+.++|+ |+| +.+.+++++|+|||+|.++-||+||||
T Consensus 77 ~~~e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~~~V~---R~g---k~~~i~A~eLVPGDiV~l~vGDkVPAD 150 (972)
T KOG0202|consen 77 DFDEPFVITLIIVINVTVGFVQEYNAEKALEALKELVPPMAHVL---RSG---KLQHILARELVPGDIVELKVGDKIPAD 150 (972)
T ss_pred hcccceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCccceEE---ecC---cccceehhccCCCCEEEEecCCccccc
Confidence 44445555555556666777888899999999999999999999 888 789999999999999999999999999
Q ss_pred EEEEeccce-eeccccCCCcceeccCC--------------CCceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhc
Q 004259 477 GIVVWGTSY-VNESMVTGEAVPVLKEI--------------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQ 541 (765)
Q Consensus 477 g~vl~g~~~-Vdes~LTGEs~pv~k~~--------------g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~ 541 (765)
.++++-..+ ||||.|||||.|+.|.. .+.+|+||.+..|.++++|+.||.+|.+|+|.+.+++..
T Consensus 151 lRl~e~~sl~iDeS~LTGEs~pv~K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~a~GIVi~TG~nTeiG~I~~~m~~~e 230 (972)
T KOG0202|consen 151 LRLIEAKSLRIDESSLTGESEPVSKDTDAVPKDENADVQDKKNIAFSGTLVVAGRAKGIVIGTGLNTEIGKIFKMMQATE 230 (972)
T ss_pred eeEEeeeeeeeecccccCCcccccccCccccCCCCCccccceeeEeecceeecCceeEEEEeccccchHHHHHHHHhccC
Confidence 999997777 99999999999999932 357999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCcccCCCcchHHHHHHHHhheeeecccchhhhhHHH
Q 004259 542 MSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAY--PEQWLPENGTHFVFALMFSISVVVIACPCALGLATPT 619 (765)
Q Consensus 542 ~~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~ 619 (765)
..|+|+|+..|.+...+..++.++.+.++++. .+.+... ...|+ ..+...|..++++-+.++|.+|+..+.+
T Consensus 231 ~~kTPLqk~ld~~G~qLs~~is~i~v~v~~~n--ig~f~~p~~~g~~f----k~~~~~f~IaVsLAVAAIPEGLPaVvT~ 304 (972)
T KOG0202|consen 231 SPKTPLQKKLDEFGKQLSKVISFICVGVWLLN--IGHFLDPVHGGSWF----KGALYYFKIAVSLAVAAIPEGLPAVVTT 304 (972)
T ss_pred CCCCcHHHHHHHHHHHHHHHheehhhhHHHhh--hhhhccccccccch----hchhhhhhHHHHHHHHhccCCCcchhhh
Confidence 99999999999999999866655555444331 2221100 01222 3466778889999999999999999999
Q ss_pred HHHHHHHHHhhcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEec
Q 004259 620 AVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVF 671 (765)
Q Consensus 620 ~~~~~~~~~~~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~ 671 (765)
+++.|..+|+|++.++|...++|+||.+++||+|||||||+|+|.+++++..
T Consensus 305 tLALG~~rMakknaIVRkLPsVETLGc~~VICSDKTGTLTtN~Mtv~~i~~~ 356 (972)
T KOG0202|consen 305 TLALGTRRMAKKNAIVRKLPSVETLGCVNVICSDKTGTLTTNQMTVSKIFIP 356 (972)
T ss_pred hHHHhHHHHHhhhhhhhcccchhhccceeEEecCCCCcccccceEEEEEEec
Confidence 9999999999999999999999999999999999999999999999999865
No 24
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-39 Score=351.59 Aligned_cols=339 Identities=23% Similarity=0.303 Sum_probs=259.8
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhhhhHHHHHHHH--HHHHHHHHHhchHHHHH
Q 004259 349 RFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVL--FGKYLEILAKGKTSDAI 426 (765)
Q Consensus 349 ~~~~~a~~~l~~~~~~md~l~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~le~~~~~k~~~~l 426 (765)
.|++--|++++... |+.|.+ +| ++++.+++..++....|++.+++++.+++ +-..+.+|.+.+.-+.+
T Consensus 144 ~Fl~fvweA~qD~T-----LiIL~v-aA----vvSl~lgi~~~g~~~GW~eG~aI~~sV~~VV~VtA~nDy~qe~QF~~L 213 (1034)
T KOG0204|consen 144 GFLRFVWEALQDVT-----LIILMV-AA----VVSLGLGIYTPGIEDGWIEGVAILLSVILVVLVTAVNDYRQELQFRKL 213 (1034)
T ss_pred cHHHHHHHHhccch-----HHHHHH-HH----HHHHhhhhccCCCCcccccchhheeeEEEEEEEeecchhHHhhhhhhh
Confidence 34455577777543 222221 12 12233444455666789988777665442 33344555444444444
Q ss_pred HHHHhcCCCeEEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccCccEEEEeccce-eeccccCCCcceeccCC--C
Q 004259 427 KKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSY-VNESMVTGEAVPVLKEI--N 503 (765)
Q Consensus 427 ~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~g~~~-Vdes~LTGEs~pv~k~~--g 503 (765)
++- ....+..|+ |+| +.++|+..||++||++.++.||.+||||++++|+.+ +|||++||||.++.|.. +
T Consensus 214 ~~~--k~~~k~~Vi---R~G---~r~~isI~diVVGDIv~lk~GDqvPADGvli~gn~L~iDESSlTGESd~v~k~~~~d 285 (1034)
T KOG0204|consen 214 QKE--KRNIKFQVI---RGG---RRQQISIYDLVVGDIVQLKIGDQVPADGVLIQGNSLKIDESSLTGESDHVQKSLDKD 285 (1034)
T ss_pred hhh--hhceEEEEE---ECC---EEEEEEEeeeeeccEEEeecCCccccceEEEeccceeEecccccCCCcceeccCCCC
Confidence 422 223567777 888 789999999999999999999999999999999776 99999999999999966 5
Q ss_pred CceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 004259 504 SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYP 583 (765)
Q Consensus 504 ~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~ 583 (765)
..+++||++.+|.+++.|+.+|.+|..|+++..+......++|+|-..++++...-.+.+++|++++++.......+.+.
T Consensus 286 PfLlSGTkv~eGsgkMlVTaVGmnt~wG~~m~~l~~~~~e~tpLQ~kL~~lA~~Igk~Gl~~A~~~~~VL~~r~~~~~~~ 365 (1034)
T KOG0204|consen 286 PFLLSGTKVMEGSGKMLVTAVGMNTQWGIIMTLLGAGGEEETPLQVKLNGLATQIGKIGLLFAALTFIVLVIRFFIGKTK 365 (1034)
T ss_pred CeEeecceeecCcceEEEEEeeecchHhhHHHhhhcCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeee
Confidence 67999999999999999999999999999999999999899999999999999998888888888887755433332221
Q ss_pred ------CcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHHHhhcceEEecchHHhhhcCCcEEEecCCCc
Q 004259 584 ------EQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGT 657 (765)
Q Consensus 584 ------~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~~~~~gilik~~~~le~lg~v~~i~fDKTGT 657 (765)
..|.+.....+...|..++.++++++|.+||||+.++++.++++|.+.+.++|..+++|++|..++||.|||||
T Consensus 366 ~~~~~~~~~~~~~~~~~v~~f~i~VTilVVAVPEGLPLAVTLsLAys~kkMmkD~~LVRhL~ACETMGsAT~ICsDKTGT 445 (1034)
T KOG0204|consen 366 IEGGTGTTWSDEYIQEFVKFFIIAVTILVVAVPEGLPLAVTLSLAYSMKKMMKDNNLVRHLDACETMGSATAICSDKTGT 445 (1034)
T ss_pred cCCCCCccccHHHHHHHHHHhhheeEEEEEECCCCccHHHHHHHHHHHHHHhcchhHHHHhHHHhhcCCceEEEecCcCc
Confidence 12333334557778888899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCceEEEEEEecCCCCH----------HHHHHHH-HHH-----------------HccCCChHHHHHHHHHHhc
Q 004259 658 LTQGRATVTTAKVFTKMDR----------GEFLTLV-ASA-----------------EASSEHPLAKAVVEYARHF 705 (765)
Q Consensus 658 LT~g~~~v~~~~~~~~~~~----------~~~l~~a-~~~-----------------e~~s~hPia~Ai~~~~~~~ 705 (765)
||+|+|+|++.+..++... ..+..+. .+. .+....|..+||+.++...
T Consensus 446 LT~N~MtVV~~~~~~~~~k~~~~~~~~l~~~~~~ll~~gI~~Nt~g~v~~~~~~g~~~~~~GspTE~AlL~f~~~L 521 (1034)
T KOG0204|consen 446 LTTNRMTVVQSYIGSEHYKVNSPKSSNLPPSLLDLLLQGIAQNTTGSVVKPEKGGEQPEQLGSPTECALLGFGLKL 521 (1034)
T ss_pred eEeeeEEEEeeeeccccccccCcccccCCHHHHHHHHHHHhhcCCCeEEecCCCCcCccccCCHHHHHHHHHHHHh
Confidence 9999999999877533211 1222221 221 2235689999999998654
No 25
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.9e-37 Score=324.95 Aligned_cols=288 Identities=19% Similarity=0.283 Sum_probs=234.3
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCcc
Q 004259 394 SPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKL 473 (765)
Q Consensus 394 ~~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~i 473 (765)
++.|-+. ..+..+++++..+...+++.+-+....|+.-...++.|+ ||| ++.+++++.|+||||+.++.|++|
T Consensus 94 ~~DW~DF-~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA~KakVl---RDG---kw~E~eAs~lVPGDIlsik~GdIi 166 (942)
T KOG0205|consen 94 PPDWQDF-VGICCLLLINSTISFIEENNAGNAAAALMAGLAPKAKVL---RDG---KWSEQEASILVPGDILSIKLGDII 166 (942)
T ss_pred Ccchhhh-hhhheeeeecceeeeeeccccchHHHHHHhccCcccEEe---ecC---eeeeeeccccccCceeeeccCCEe
Confidence 3455443 445555566666666677777788888877777788888 899 889999999999999999999999
Q ss_pred CccEEEEeccce-eeccccCCCcceeccCCCCceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhccCCChhHHHHH
Q 004259 474 PADGIVVWGTSY-VNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFAD 552 (765)
Q Consensus 474 P~Dg~vl~g~~~-Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~~~~~~ 552 (765)
|||+++++|+-+ ||+|.|||||.|+.|.+||.+|+||.+.+|.+.++|+.||.+|+.|+-..++.. .++.-.+|+..+
T Consensus 167 PaDaRLl~gD~LkiDQSAlTGESLpvtKh~gd~vfSgSTcKqGE~eaVViATg~~TF~GkAA~LVds-t~~~GHFqkVLt 245 (942)
T KOG0205|consen 167 PADARLLEGDPLKIDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS-TNQVGHFQKVLT 245 (942)
T ss_pred cCccceecCCccccchhhhcCCccccccCCCCceecccccccceEEEEEEEeccceeehhhHHhhcC-CCCcccHHHHHH
Confidence 999999999976 999999999999999999999999999999999999999999999999999988 456677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeec-ccchhhhhHHHHHHHHHHHHhhc
Q 004259 553 FVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIA-CPCALGLATPTAVMVATGVGANN 631 (765)
Q Consensus 553 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~-~P~al~la~p~~~~~~~~~~~~~ 631 (765)
-+..+++..+.+--++.+++.+... .-.+.-....+.++++. +|.++|..+.+..+++..+++++
T Consensus 246 ~IGn~ci~si~~g~lie~~vmy~~q--------------~R~~r~~i~nLlvllIGgiPiamPtVlsvTMAiGs~rLaqq 311 (942)
T KOG0205|consen 246 GIGNFCICSIALGMLIEITVMYPIQ--------------HRLYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQ 311 (942)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhhh--------------hhhhhhhhhheheeeecccccccceeeeehhhHHHHHHHhc
Confidence 8777665554433333333222211 11233344556666666 99999999999999999999999
Q ss_pred ceEEecchHHhhhcCCcEEEecCCCccccCceEEEE--E-EecCCCCHHHHHHHHHHH-HccCCChHHHHHHHHHH
Q 004259 632 GVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTT--A-KVFTKMDRGEFLTLVASA-EASSEHPLAKAVVEYAR 703 (765)
Q Consensus 632 gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~--~-~~~~~~~~~~~l~~a~~~-e~~s~hPia~Ai~~~~~ 703 (765)
|.+.|...++|.++.+|++|+|||||||.|+++|.+ + +..++.++++++-.|+.+ .....+.|.+|++...+
T Consensus 312 gAItkrmtAIEemAGmdVLCSDKTGTLTlNkLSvdknl~ev~v~gv~~D~~~L~A~rAsr~en~DAID~A~v~~L~ 387 (942)
T KOG0205|consen 312 GAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKDDVLLTAARASRKENQDAIDAAIVGMLA 387 (942)
T ss_pred ccHHHHHHHHHHhhCceEEeecCcCceeecceecCcCcceeeecCCChHHHHHHHHHHhhhcChhhHHHHHHHhhc
Confidence 999999999999999999999999999999999988 5 445678888887777654 44567889999998764
No 26
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=100.00 E-value=1.9e-35 Score=302.75 Aligned_cols=223 Identities=30% Similarity=0.557 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCe-EEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccCccEEEEe
Q 004259 403 MLITFVLFGKYLEILAKGKTSDAIKKLVELAPAT-ALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVW 481 (765)
Q Consensus 403 ~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~-~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~ 481 (765)
+++++++++.+++.+.++|+++.++++.++.+++ ++++ ||| +++++++++|+|||+|.+++||++||||+|++
T Consensus 1 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~---r~~---~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~ 74 (230)
T PF00122_consen 1 VILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVI---RDG---RWQKIPSSELVPGDIIILKAGDIVPADGILLE 74 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEE---ETT---EEEEEEGGGT-TTSEEEEETTEBESSEEEEEE
T ss_pred CEEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEE---ecc---ccccchHhhccceeeeecccccccccCcccee
Confidence 4677888999999999999999999999998887 7777 777 78999999999999999999999999999999
Q ss_pred -ccceeeccccCCCcceeccC-----CCCceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhccCCChhHHHHHHHH
Q 004259 482 -GTSYVNESMVTGEAVPVLKE-----INSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVA 555 (765)
Q Consensus 482 -g~~~Vdes~LTGEs~pv~k~-----~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~~~~~~~~~ 555 (765)
|.+.||||.+|||+.|+.|. .|+.+|+||.+.+|++.++|+++|.+|.++++.+.+...+.+++++++..+++.
T Consensus 75 ~g~~~vd~s~ltGes~pv~k~~~~~~~~~~i~~Gs~v~~g~~~~~Vi~tG~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00122_consen 75 SGSAYVDESALTGESEPVKKTPLPLNPGNIIFAGSIVVSGWGIGVVIATGSDTKLGRILQLVSKSESKKSPLERKLNKIA 154 (230)
T ss_dssp SSEEEEECHHHHSBSSEEEESSSCCCTTTEE-TTEEEEEEEEEEEEEE-GGGSHHHHHHHHHHTSCSS-THHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhccccccccccccccceeeecccccccccccccccccchhhhhhhHHHH
Confidence 99999999999999999999 999999999999999999999999999999999999998888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHHHhhcceEE
Q 004259 556 SIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLI 635 (765)
Q Consensus 556 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~~~~~gili 635 (765)
.++++++++++++++++|++. ....+|...+..++++++.+|||+|++++|+++..+..+++++|+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~~l~~~~P~~l~~~~~~~~~~~~~~~~~~~i~v 222 (230)
T PF00122_consen 155 KILIIIILAIAILVFIIWFFN------------DSGISFFKSFLFAISLLIVLIPCALPLALPLSLAIAARRLAKNGIIV 222 (230)
T ss_dssp HHHHHHHHHHHHHHHHHCHTG------------STTCHCCHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred HHHHhcccccchhhhccceec------------ccccccccccccccceeeeecccceeehHHHHHHHHHHHHHHCCEEE
Confidence 999999999998888776652 11346778889999999999999999999999999999999999999
Q ss_pred ecchHHhh
Q 004259 636 KGGDALER 643 (765)
Q Consensus 636 k~~~~le~ 643 (765)
|+++++|.
T Consensus 223 ~~~~a~E~ 230 (230)
T PF00122_consen 223 KNLSALEA 230 (230)
T ss_dssp SSTTHHHH
T ss_pred eCcccccC
Confidence 99999985
No 27
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-34 Score=319.15 Aligned_cols=270 Identities=22% Similarity=0.334 Sum_probs=221.6
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCCceeeeEEeec
Q 004259 377 YFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDA 456 (765)
Q Consensus 377 ~~~s~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~ 456 (765)
|++.++++++ |....|+.++..++++.+.+..+..|..++.++.++++.+.. ..++|+ |+| .+++|++
T Consensus 198 YlFQ~fSv~l-----W~~d~Y~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~~-~~V~V~---R~g---~~~ti~S 265 (1140)
T KOG0208|consen 198 YLFQAFSVAL-----WLADSYYYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVKFT-CPVTVI---RDG---FWETVDS 265 (1140)
T ss_pred HHHHhHHhhh-----hhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEE---ECC---EEEEEec
Confidence 5555555554 334567777888888888899999999999999999887653 577888 778 8999999
Q ss_pred cCcCCCCEEEEcC-CCccCccEEEEeccceeeccccCCCcceeccCCC-------------------Cceeeeeeeec--
Q 004259 457 LLIQSGDTLKVLP-GTKLPADGIVVWGTSYVNESMVTGEAVPVLKEIN-------------------SPVIGGTINLH-- 514 (765)
Q Consensus 457 ~~l~~GDiv~v~~-Ge~iP~Dg~vl~g~~~Vdes~LTGEs~pv~k~~g-------------------~~v~aGt~~~~-- 514 (765)
++|+|||++.+.+ +-..|||+++++|+|.||||||||||+|+.|.+- +.+|.||.+.+
T Consensus 266 ~eLVPGDil~i~~~~~~~PcDa~Li~g~civNEsmLTGESVPv~K~~l~~~~~~~~~~~~~~~~~~rh~lfcGT~vlq~r 345 (1140)
T KOG0208|consen 266 SELVPGDILYIPPPGKIMPCDALLISGDCIVNESMLTGESVPVTKTPLPMGTDSLDSITISMSTNSRHTLFCGTKVLQAR 345 (1140)
T ss_pred cccccccEEEECCCCeEeecceEEEeCcEEeecccccCCcccccccCCccccccCcCeeechhhcCcceeeccceEEEee
Confidence 9999999999999 9999999999999999999999999999999552 46899998875
Q ss_pred ----ceEEEEEEEeCCcchHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCC
Q 004259 515 ----GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPEN 590 (765)
Q Consensus 515 ----g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 590 (765)
+.+.+.|++||-.|..|++++.+-..+ |.....-+=+..|+....++|++.|++..+.... .
T Consensus 346 ~~~g~~v~a~V~RTGF~T~KGqLVRsilyPk----P~~fkfyrds~~fi~~l~~ia~~gfiy~~i~l~~----------~ 411 (1140)
T KOG0208|consen 346 AYLGGPVLAMVLRTGFSTTKGQLVRSILYPK----PVNFKFYRDSFKFILFLVIIALIGFIYTAIVLNL----------L 411 (1140)
T ss_pred cCCCCceEEEEEeccccccccHHHHhhcCCC----CcccHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH----------c
Confidence 789999999999999999987764432 2333333334445555555565555543332211 1
Q ss_pred cchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHHHhhcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEe
Q 004259 591 GTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKV 670 (765)
Q Consensus 591 ~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~~~~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~ 670 (765)
+.+....+.+++.++.+..|+|||.++.+++..+.+|+.|+||+|-+++.+...|++|++|||||||||++.+.+..+.+
T Consensus 412 g~~~~~iiirsLDliTi~VPPALPAaltvG~~~a~~RLkkk~IfCisP~rIn~~G~i~~~cFDKTGTLTEdGLDl~gv~~ 491 (1140)
T KOG0208|consen 412 GVPLKTIIIRSLDLITIVVPPALPAALTVGIIYAQSRLKKKGIFCISPQRINLCGKLNLVCFDKTGTLTEDGLDLWGVVP 491 (1140)
T ss_pred CCCHHHHhhhhhcEEEEecCCCchhhhhHHHHHHHHHHHhcCeEEcCccceeecceeeEEEEcCCCcccccceeEEEEEe
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 004259 671 FT 672 (765)
Q Consensus 671 ~~ 672 (765)
..
T Consensus 492 ~~ 493 (1140)
T KOG0208|consen 492 VE 493 (1140)
T ss_pred cc
Confidence 54
No 28
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=100.00 E-value=2.1e-32 Score=334.66 Aligned_cols=259 Identities=17% Similarity=0.211 Sum_probs=206.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCC-CceeeeEEeeccCcCCCCEEEEcCCCccC
Q 004259 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKV-GKCIEEREIDALLIQSGDTLKVLPGTKLP 474 (765)
Q Consensus 396 ~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~-g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP 474 (765)
.++...++++++..+++++|++.++|+++.++ ++.++++ |+ | .++++++++|+|||+|.|++||+||
T Consensus 52 t~~~pL~~v~~~~~~~~~~ed~~r~~~d~~~n------~~~~~v~---~~~~---~~~~i~~~~l~~GDiv~l~~g~~iP 119 (1057)
T TIGR01652 52 TSIVPLAFVLIVTAIKEAIEDIRRRRRDKEVN------NRLTEVL---EGHG---QFVEIPWKDLRVGDIVKVKKDERIP 119 (1057)
T ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHhHHHHh------CcEEEEE---CCCC---cEEEeeeecccCCCEEEEcCCCccc
Confidence 44445556666677999999999999987654 3788888 64 6 6789999999999999999999999
Q ss_pred ccEEEEe-----ccceeeccccCCCcceeccCCC----------------------------------------------
Q 004259 475 ADGIVVW-----GTSYVNESMVTGEAVPVLKEIN---------------------------------------------- 503 (765)
Q Consensus 475 ~Dg~vl~-----g~~~Vdes~LTGEs~pv~k~~g---------------------------------------------- 503 (765)
||++|++ |.+.||||.||||+.|+.|.+.
T Consensus 120 aD~~ll~ss~~~g~~~v~~s~l~GEs~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~F~G~~~~~~~~~~~l~ 199 (1057)
T TIGR01652 120 ADLLLLSSSEPDGVCYVETANLDGETNLKLRQALEETQKMLDEDDIKNFSGEIECEQPNASLYSFQGNMTINGDRQYPLS 199 (1057)
T ss_pred ceEEEEeccCCCceEEEEeeccCCeecceEeecchhhhccCChhhHhhceEEEEEcCCCCcceEEEEEEEECCCCcccCC
Confidence 9999997 7789999999999999988531
Q ss_pred --Cceeeeeeeec-ceEEEEEEEeCCcchHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004259 504 --SPVIGGTINLH-GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLG 580 (765)
Q Consensus 504 --~~v~aGt~~~~-g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~ 580 (765)
+.+++||.+.+ |++.+.|++||.+|.+++. ......+++++++.++++..+++.+.++++++++++..++...
T Consensus 200 ~~N~l~rGs~l~nt~~~~gvVvyTG~~Tk~~~n---~~~~~~k~s~le~~ln~~~~~l~~~~i~l~~i~~i~~~~~~~~- 275 (1057)
T TIGR01652 200 PDNILLRGCTLRNTDWVIGVVVYTGHDTKLMRN---ATQAPSKRSRLEKELNFLIIILFCLLFVLCLISSVGAGIWNDA- 275 (1057)
T ss_pred HHHhHhcCCEecCCCeEEEEEEEEchhhhhhhc---CCCCcccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHheecc-
Confidence 45788888888 9999999999999977653 4445667899999999998887777777776666543332110
Q ss_pred CCCCcc-cC------CCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHH------HHHhhc----ceEEecchHHhh
Q 004259 581 AYPEQW-LP------ENGTHFVFALMFSISVVVIACPCALGLATPTAVMVAT------GVGANN----GVLIKGGDALER 643 (765)
Q Consensus 581 ~~~~~~-~~------~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~------~~~~~~----gilik~~~~le~ 643 (765)
.....| +. .....+...+.+++.++..++|.+|+..+.++...+. .++.++ ++++|+.+.+|+
T Consensus 276 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~L~~~~IPisL~v~l~l~~~~~~~~i~~D~~m~~~~~~~~~~vr~~~~~E~ 355 (1057)
T TIGR01652 276 HGKDLWYIRLDVSERNAAANGFFSFLTFLILFSSLIPISLYVSLELVKSVQAYFINSDLQMYHEKTDTPASVRTSNLNEE 355 (1057)
T ss_pred cCCCccceecCcccccchhHHHHHHHHHHHHHhhhcceeeeehHHHHHHHHHHHHhhhhhhhccccCCcceeecCCChHH
Confidence 011112 11 0012344567788888899999999999999988887 667653 599999999999
Q ss_pred hcCCcEEEecCCCccccCceEEEEEEe
Q 004259 644 AQKIKYVIFDKTGTLTQGRATVTTAKV 670 (765)
Q Consensus 644 lg~v~~i~fDKTGTLT~g~~~v~~~~~ 670 (765)
||++++||+|||||||+|+|+++++..
T Consensus 356 LG~v~~I~sDKTGTLT~N~M~~~~~~i 382 (1057)
T TIGR01652 356 LGQVEYIFSDKTGTLTQNIMEFKKCSI 382 (1057)
T ss_pred hcCeeEEEEcCCCceeeeeEEEEEEEE
Confidence 999999999999999999999999975
No 29
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-32 Score=284.73 Aligned_cols=281 Identities=26% Similarity=0.353 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHhcCCC-eEEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccCccEEEEecc
Q 004259 405 ITFVLFGKYLEILAKGKTSDAIKKLVELAPA-TALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGT 483 (765)
Q Consensus 405 i~~~~~~~~le~~~~~k~~~~l~~l~~~~~~-~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~g~ 483 (765)
.+.+++..+-|..++.|....-..|.+...+ .++++. .+| +.+.+++.+|+.||+|+|+.||.||+||.|++|.
T Consensus 73 ~fTVlFANfaEa~AEGrgKAqAdsLr~~~~~~~A~~l~--~~g---~~~~v~st~Lk~gdiV~V~age~IP~DGeVIeG~ 147 (681)
T COG2216 73 WFTVLFANFAEAVAEGRGKAQADSLRKTKTETIARLLR--ADG---SIEMVPATELKKGDIVLVEAGEIIPSDGEVIEGV 147 (681)
T ss_pred HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhc--CCC---CeeeccccccccCCEEEEecCCCccCCCeEEeee
Confidence 3345688889999988877776666654433 445552 346 7899999999999999999999999999999999
Q ss_pred ceeeccccCCCcceeccCCC---CceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 004259 484 SYVNESMVTGEAVPVLKEIN---SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVP 560 (765)
Q Consensus 484 ~~Vdes~LTGEs~pv~k~~g---~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~ 560 (765)
+.||||.+||||.||.|+.| +.|..||.+.+.+++++++....+|++.|++.+++.++.+|+|-+--..-+..-+..
T Consensus 148 asVdESAITGESaPViresGgD~ssVtGgT~v~SD~l~irita~pG~sFlDrMI~LVEgA~R~KTPNEIAL~iLL~~LTl 227 (681)
T COG2216 148 ASVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWLKIRITANPGETFLDRMIALVEGAERQKTPNEIALTILLSGLTL 227 (681)
T ss_pred eecchhhccCCCcceeeccCCCcccccCCcEEeeeeEEEEEEcCCCccHHHHHHHHhhchhccCChhHHHHHHHHHHHHH
Confidence 99999999999999999999 789999999999999999999999999999999999999999866443332221111
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHHHhhcceEEecchH
Q 004259 561 IVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDA 640 (765)
Q Consensus 561 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~~~~~gilik~~~~ 640 (765)
+++++. .-.|.+..+.+ +.. ..+...+++++..+|..++--.+--=..++.|+.+.+++-+++++
T Consensus 228 -iFL~~~--~Tl~p~a~y~~----------g~~--~~i~~LiALlV~LIPTTIGgLLsAIGIAGMdRv~~~NViA~SGRA 292 (681)
T COG2216 228 -IFLLAV--ATLYPFAIYSG----------GGA--ASVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVTQFNVIATSGRA 292 (681)
T ss_pred -HHHHHH--HhhhhHHHHcC----------CCC--cCHHHHHHHHHHHhcccHHHHHHHhhhhhhhHhhhhceeecCcch
Confidence 111111 11122221110 001 123445667777788887766666666788999999999999999
Q ss_pred HhhhcCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHHHccCCChHHHHHHHHHHhc
Q 004259 641 LERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHF 705 (765)
Q Consensus 641 le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~~a~~~e~~s~hPia~Ai~~~~~~~ 705 (765)
+|.+|.+|+++.|||||+|-|+-.-+++++.++.+.+++.+.|....-..+.|-.++|++.|++.
T Consensus 293 VEaaGDvdtliLDKTGTIT~GnR~A~~f~p~~gv~~~~la~aa~lsSl~DeTpEGrSIV~LA~~~ 357 (681)
T COG2216 293 VEAAGDVDTLLLDKTGTITLGNRQASEFIPVPGVSEEELADAAQLASLADETPEGRSIVELAKKL 357 (681)
T ss_pred hhhcCCccEEEecccCceeecchhhhheecCCCCCHHHHHHHHHHhhhccCCCCcccHHHHHHHh
Confidence 99999999999999999999999999999999999999999888888889999999999999876
No 30
>PLN03190 aminophospholipid translocase; Provisional
Probab=99.97 E-value=9.2e-31 Score=316.96 Aligned_cols=280 Identities=16% Similarity=0.152 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHhhhcCCC---CcchhhhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCCceeeeE
Q 004259 376 AYFYSVGALLYGVVTGFW---SPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEER 452 (765)
Q Consensus 376 a~~~s~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~ 452 (765)
+++|.++..++..++... +..++...++++++..+++++|++.|+|+++.++. +.++++ ++| .++
T Consensus 115 aN~YFL~I~ilq~ip~~s~~~~~t~~~PL~~vl~v~~ike~~Ed~~r~k~d~~~N~------~~~~v~---~~~---~~~ 182 (1178)
T PLN03190 115 AYIYFLVIAVLNQLPQLAVFGRGASILPLAFVLLVTAVKDAYEDWRRHRSDRIENN------RLAWVL---VDD---QFQ 182 (1178)
T ss_pred hhHHHHHHHHHHhCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcC------cEEEEE---ECC---eEE
Confidence 345555555555444322 23344455666667789999999999999998753 678888 666 678
Q ss_pred EeeccCcCCCCEEEEcCCCccCccEEEEe-----ccceeeccccCCCcceeccCCC------------------------
Q 004259 453 EIDALLIQSGDTLKVLPGTKLPADGIVVW-----GTSYVNESMVTGEAVPVLKEIN------------------------ 503 (765)
Q Consensus 453 ~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~-----g~~~Vdes~LTGEs~pv~k~~g------------------------ 503 (765)
++++++|++||+|+|++||+|||||++++ |.++||||.||||+.|+.|.++
T Consensus 183 ~i~~~~i~vGDiv~v~~ge~iPaD~~ll~Ss~~~G~~~Vdts~LdGEt~~k~k~~~~~~~~~~~~~~~~~~~i~~e~Pn~ 262 (1178)
T PLN03190 183 EKKWKDIRVGEIIKIQANDTLPCDMVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETLSKIPEKEKINGLIKCEKPNR 262 (1178)
T ss_pred EEeHHHCCCCCEEEECCCCEeeeeEEEEeccCCCceEEEEccccCCeeeeeEecccchhhhcchhhhhceEEEEEeCCCc
Confidence 99999999999999999999999999998 8899999999999999998543
Q ss_pred ---------------------Cceeeeeeeec-ceEEEEEEEeCCcchHHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 004259 504 ---------------------SPVIGGTINLH-GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPI 561 (765)
Q Consensus 504 ---------------------~~v~aGt~~~~-g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 561 (765)
+.+++|+.+.+ .++.+.|++||.+|.+ .........+++++++.++++..+++.+
T Consensus 263 ~l~~F~G~i~~~~~~~~l~~~n~llRG~~LrnT~~i~GvVVYTG~dTK~---~~N~~~~~~K~S~le~~~N~~vi~l~~i 339 (1178)
T PLN03190 263 NIYGFQANMEVDGKRLSLGPSNIILRGCELKNTAWAIGVAVYCGRETKA---MLNNSGAPSKRSRLETRMNLEIIILSLF 339 (1178)
T ss_pred cceeEEEEEEECCCcccCCccceeeccceecCCceEEEEEEEechhhhH---hhcCCCCCCCccHHHHHHhHHHHHHHHH
Confidence 22444555554 3799999999999963 3333344567899999999999887777
Q ss_pred HHHHHHHHHHHHHHHhhcCC----CCCcccCC-----Cc-----ch----HHHHHHHHhheeeecccchhhhhHHHHHHH
Q 004259 562 VVTLALFTWLCWYVAGVLGA----YPEQWLPE-----NG-----TH----FVFALMFSISVVVIACPCALGLATPTAVMV 623 (765)
Q Consensus 562 ~l~~a~~~~~~~~~~~~~~~----~~~~~~~~-----~~-----~~----~~~~~~~~i~vlv~~~P~al~la~p~~~~~ 623 (765)
.++++++++++...+..... |...+... .. .. +...+..++.++...+|.+|.+.+.+....
T Consensus 340 ~~~l~~i~~i~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~lil~~~~IPISL~Vtleivk~~ 419 (1178)
T PLN03190 340 LIALCTIVSVCAAVWLRRHRDELDTIPFYRRKDFSEGGPKNYNYYGWGWEIFFTFLMSVIVFQIMIPISLYISMELVRVG 419 (1178)
T ss_pred HHHHHHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhhcceeeeeeHHHHHHH
Confidence 77777666555322211000 10011000 00 00 122333445566688999999999999866
Q ss_pred HHHHHhhc----------ceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEe
Q 004259 624 ATGVGANN----------GVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKV 670 (765)
Q Consensus 624 ~~~~~~~~----------gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~ 670 (765)
...++.+. ++.+|+.+..|+||+|++||+|||||||+|+|+++++..
T Consensus 420 qa~~I~~D~~m~~~~~~~~~~vr~snl~EeLGqV~yIfSDKTGTLT~N~M~fk~~~i 476 (1178)
T PLN03190 420 QAYFMIRDDQMYDEASNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASI 476 (1178)
T ss_pred HHHHHHhhhhcccccCCCcceeccCcchhhhccceEEEEcCCCccccceEEEEEEEE
Confidence 55555432 378999999999999999999999999999999999875
No 31
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-31 Score=293.86 Aligned_cols=253 Identities=25% Similarity=0.322 Sum_probs=225.5
Q ss_pred hHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccCccEEEE
Q 004259 401 SAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVV 480 (765)
Q Consensus 401 ~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl 480 (765)
+.+++..+.+...+..++..|..+.++.+.++.|..++|+ ||| ....+..+++++||+|.++-|++||||.+++
T Consensus 129 giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~~~~Vi---Rdg---~k~~i~~eelVvGD~v~vk~GdrVPADiRii 202 (1019)
T KOG0203|consen 129 GIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQQALVI---RDG---EKMTINAEELVVGDLVEVKGGDRVPADIRII 202 (1019)
T ss_pred EEEEEEEEEEEecCCCccchhhHHHHHHHhccchhhheee---ecc---eeEEechhhcccccceeeccCCcccceeEEE
Confidence 4444444555566777888899999999999999999999 888 7899999999999999999999999999999
Q ss_pred eccce-eeccccCCCcceeccCC----------CCceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhccCCChhHH
Q 004259 481 WGTSY-VNESMVTGEAVPVLKEI----------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQK 549 (765)
Q Consensus 481 ~g~~~-Vdes~LTGEs~pv~k~~----------g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~~~ 549 (765)
++... +|+|+|||||.|..+.+ .|.-|.+|.+.+|..++.|.+||.+|.+|+|..+-..-...++|+++
T Consensus 203 s~~g~~vdnsslTGesEP~~~~~~~t~~~~~Et~Ni~f~st~~veG~~~givi~tGd~Tv~G~ia~l~~~~~~~~t~~~~ 282 (1019)
T KOG0203|consen 203 SATGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTGRGIVIATGDRTVMGRIASLASGLEDGKTPIAK 282 (1019)
T ss_pred EecceeEeccccccccCCccCCccccccCchhheeeeeeeeEEecceEEEEEEecCCceEEeehhhhhccCCCCCCcchh
Confidence 98865 99999999999998844 46789999999999999999999999999999999888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHHHh
Q 004259 550 FADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGA 629 (765)
Q Consensus 550 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~~~ 629 (765)
.++++..+.....+++++..|++....+ ..|..++.+.+++++...|.+|+..+...+.....+++
T Consensus 283 ei~~fi~~it~vAi~~~i~fF~~~~~~g--------------y~~l~avv~~i~iivAnvPeGL~~tvTv~LtltakrMa 348 (1019)
T KOG0203|consen 283 EIEHFIHIITGVAIFLGISFFILALILG--------------YEWLRAVVFLIGIIVANVPEGLLATVTVCLTLTAKRMA 348 (1019)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHhhc--------------chhHHHhhhhheeEEecCcCCccceehhhHHHHHHHHh
Confidence 9999988887777777766665544433 35778888899999999999999999999999999999
Q ss_pred hcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEecCC
Q 004259 630 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK 673 (765)
Q Consensus 630 ~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~ 673 (765)
++++++|+.++.|.+|...+||+|||||||+|+|+|.+++..+.
T Consensus 349 ~Knc~vknLeavetlGsts~I~SDktGTlTqnrMtVahlw~d~~ 392 (1019)
T KOG0203|consen 349 RKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHLWFDNQ 392 (1019)
T ss_pred hceeEEeeeeheeecccceeEeecceeeEEecceEEEeeccCCc
Confidence 99999999999999999999999999999999999999987543
No 32
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=99.95 E-value=8.6e-28 Score=262.50 Aligned_cols=289 Identities=20% Similarity=0.206 Sum_probs=208.3
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCCceeeeEEeeccCcCCCCEEEEcC---CC
Q 004259 395 PTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLP---GT 471 (765)
Q Consensus 395 ~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~---Ge 471 (765)
+.||..+.+-++++..-+.--.++|.|+-..++.+. ..|....+. |++ +|+.+.+++|.|||+|.|.. ..
T Consensus 214 DeyWYySlFtLfMli~fE~tlV~Qrm~~lse~R~Mg-~kpy~I~v~---R~k---KW~~l~seeLlPgDvVSI~r~~ed~ 286 (1160)
T KOG0209|consen 214 DEYWYYSLFTLFMLIAFEATLVKQRMRTLSEFRTMG-NKPYTINVY---RNK---KWVKLMSEELLPGDVVSIGRGAEDS 286 (1160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCceEEEEE---ecC---cceeccccccCCCceEEeccCcccC
Confidence 455555555555554444444566666666666543 345666676 666 78999999999999999988 77
Q ss_pred ccCccEEEEeccceeeccccCCCcceeccCC-----------------CCceeeeeeee-------------cceEEEEE
Q 004259 472 KLPADGIVVWGTSYVNESMVTGEAVPVLKEI-----------------NSPVIGGTINL-------------HGVLHIQA 521 (765)
Q Consensus 472 ~iP~Dg~vl~g~~~Vdes~LTGEs~pv~k~~-----------------g~~v~aGt~~~-------------~g~~~~~v 521 (765)
.||||.+++.|+|.|||+||||||.|..|++ ...+|+||.++ +|.+.+.|
T Consensus 287 ~vPCDllLL~GsciVnEaMLtGESvPl~KE~Ie~~~~d~~ld~~~d~k~hVlfGGTkivQht~p~~~slk~pDggc~a~V 366 (1160)
T KOG0209|consen 287 HVPCDLLLLRGSCIVNEAMLTGESVPLMKESIELRDSDDILDIDRDDKLHVLFGGTKIVQHTPPKKASLKTPDGGCVAYV 366 (1160)
T ss_pred cCCceEEEEecceeechhhhcCCCccccccccccCChhhhcccccccceEEEEcCceEEEecCCccccccCCCCCeEEEE
Confidence 8999999999999999999999999999944 23589999887 47899999
Q ss_pred EEeCCcchHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHH
Q 004259 522 TKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFS 601 (765)
Q Consensus 522 ~~~g~~t~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (765)
.+||.+|.-|++++.+--..++-+. -++=+.+|+.+.+++|++....-+.-|.. ....+-+.-++-.
T Consensus 367 lrTGFeTSQGkLvRtilf~aervTa----Nn~Etf~FILFLlVFAiaAa~Yvwv~Gsk---------d~~RsrYKL~LeC 433 (1160)
T KOG0209|consen 367 LRTGFETSQGKLVRTILFSAERVTA----NNRETFIFILFLLVFAIAAAGYVWVEGSK---------DPTRSRYKLFLEC 433 (1160)
T ss_pred EeccccccCCceeeeEEecceeeee----ccHHHHHHHHHHHHHHHHhhheEEEeccc---------Ccchhhhheeeee
Confidence 9999999999988776543333322 12223345555555555433211111110 1112334445556
Q ss_pred hheeeecccchhhhhHHHHHHHHHHHHhhcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEecCCC-------
Q 004259 602 ISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKM------- 674 (765)
Q Consensus 602 i~vlv~~~P~al~la~p~~~~~~~~~~~~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~~------- 674 (765)
+-++...+|.-||+-..+|+-.++..++|.|++|..+-.+.-+|++|..|||||||||+..|.|..+...+..
T Consensus 434 ~LIlTSVvPpELPmELSmAVNsSL~ALak~~vyCTEPFRIPfAGkvdvCCFDKTGTLT~d~lvv~Gvag~~~~~~~~~~~ 513 (1160)
T KOG0209|consen 434 TLILTSVVPPELPMELSMAVNSSLIALAKLGVYCTEPFRIPFAGKVDVCCFDKTGTLTEDDLVVEGVAGLSADEGALTPA 513 (1160)
T ss_pred eEEEeccCCCCCchhhhHHHHHHHHHHHHhceeecCccccccCCceeEEEecCCCccccccEEEEecccccCCcccccch
Confidence 6677778999999999999999999999999999999999999999999999999999999999998763211
Q ss_pred ---CHHH--HHHHHHHH---H-ccCCChHHHHHHHHHH
Q 004259 675 ---DRGE--FLTLVASA---E-ASSEHPLAKAVVEYAR 703 (765)
Q Consensus 675 ---~~~~--~l~~a~~~---e-~~s~hPia~Ai~~~~~ 703 (765)
+.+. +++.+.++ | .--.+|+.+|.++...
T Consensus 514 s~~p~~t~~vlAscHsLv~le~~lVGDPlEKA~l~~v~ 551 (1160)
T KOG0209|consen 514 SKAPNETVLVLASCHSLVLLEDKLVGDPLEKATLEAVG 551 (1160)
T ss_pred hhCCchHHHHHHHHHHHHHhcCcccCChHHHHHHHhcC
Confidence 1222 33333333 3 4468999999998763
No 33
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3e-24 Score=230.90 Aligned_cols=282 Identities=17% Similarity=0.236 Sum_probs=214.9
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccC
Q 004259 395 PTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLP 474 (765)
Q Consensus 395 ~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP 474 (765)
..||...++++++.++.+.++++.|++.++..++ +..+++. |+| ....|+++|++||+|++..+++||
T Consensus 129 ~ty~~pl~fvl~itl~keavdd~~r~~rd~~~Ns------e~y~~lt--r~~----~~~~~Ss~i~vGDvi~v~K~~RVP 196 (1051)
T KOG0210|consen 129 STYWGPLGFVLTITLIKEAVDDLKRRRRDRELNS------EKYTKLT--RDG----TRREPSSDIKVGDVIIVHKDERVP 196 (1051)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhheeec--cCC----cccccccccccccEEEEecCCcCC
Confidence 4677778889999999999999999988887776 4445554 555 233499999999999999999999
Q ss_pred ccEEEEe-----ccceeeccccCCCcceecc-----------------------------------------------CC
Q 004259 475 ADGIVVW-----GTSYVNESMVTGEAVPVLK-----------------------------------------------EI 502 (765)
Q Consensus 475 ~Dg~vl~-----g~~~Vdes~LTGEs~pv~k-----------------------------------------------~~ 502 (765)
||.++++ |+++|-+..|+||+..+.| ..
T Consensus 197 ADmilLrTsd~sg~~FiRTDQLDGETDWKLrl~vp~tQ~l~~~~el~~i~v~Ae~P~kdIh~F~Gt~~~~d~~~~~~Lsv 276 (1051)
T KOG0210|consen 197 ADMILLRTSDKSGSCFIRTDQLDGETDWKLRLPVPRTQHLTEDSELMEISVYAEKPQKDIHSFVGTFTITDSDKPESLSV 276 (1051)
T ss_pred cceEEEEccCCCCceEEeccccCCcccceeeccchhhccCCcccchheEEEeccCcchhhHhhEEEEEEecCCCCCcccc
Confidence 9999995 8899999999999988766 12
Q ss_pred CCceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhccCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004259 503 NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKA---PIQKFADFVASIFVPIVVTLALFTWLCWYVAGVL 579 (765)
Q Consensus 503 g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~---~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ 579 (765)
.+.++++|++.+|.+.+.|++||.||+. +.+....++ .++..++-+.+++..++++++++.... .+
T Consensus 277 entLWanTVvAs~t~~gvVvYTG~dtRs------vMNts~pr~KvGllelEiN~ltKiL~~~vlvLs~vmv~~---~g-- 345 (1051)
T KOG0210|consen 277 ENTLWANTVVASGTAIGVVVYTGRDTRS------VMNTSRPRSKVGLLELEINGLTKILFCFVLVLSIVMVAM---KG-- 345 (1051)
T ss_pred cceeeeeeeEecCcEEEEEEEecccHHH------HhccCCcccccceeeeecccHHHHHHHHHHHHHHHHHHh---hc--
Confidence 4679999999999999999999999964 223333333 345667888888888888777754332 12
Q ss_pred CCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHHHhh----cceEEecchHHhhhcCCcEEEecCC
Q 004259 580 GAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGAN----NGVLIKGGDALERAQKIKYVIFDKT 655 (765)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~~~~----~gilik~~~~le~lg~v~~i~fDKT 655 (765)
.+..|+..+.+++.++...+|..|...+-++-..-.....+ .|.++|+...-|+||++.++..|||
T Consensus 346 ----------~~~~wyi~~~RfllLFS~IIPISLRvnlDmaK~~ys~~i~~D~~IpgtvvRSstIPEeLGRIsylLtDKT 415 (1051)
T KOG0210|consen 346 ----------FGSDWYIYIIRFLLLFSSIIPISLRVNLDMAKIVYSWQIEHDKNIPGTVVRSSTIPEELGRISYLLTDKT 415 (1051)
T ss_pred ----------CCCchHHHHHHHHHHHhhhceeEEEEehhHHHhhHhhhcccCCCCCceeeecCCChHHhcceEEEEecCc
Confidence 13578899999999999999999998888886665554433 5789999999999999999999999
Q ss_pred CccccCceEEEEEEec----CCCCHHHHHHHHHHHHc-----------cCCChHHHHHHHHHHhccCCC
Q 004259 656 GTLTQGRATVTTAKVF----TKMDRGEFLTLVASAEA-----------SSEHPLAKAVVEYARHFHFFD 709 (765)
Q Consensus 656 GTLT~g~~~v~~~~~~----~~~~~~~~l~~a~~~e~-----------~s~hPia~Ai~~~~~~~~~~~ 709 (765)
||||+|+|++++++.. +..+-+++-+.+.++-. .-.||...-+.+..+...+|+
T Consensus 416 GTLTqNEM~~KKiHLGTv~~s~e~~~eV~~~i~s~~~~~~~~~~~~~~~~k~~~s~rv~~~V~alalCH 484 (1051)
T KOG0210|consen 416 GTLTQNEMEFKKIHLGTVAYSAETMDEVSQHIQSLYTPGRNKGKGALSRVKKDMSARVRNAVLALALCH 484 (1051)
T ss_pred CccccchheeeeeeeeeeeccHhHHHHHHHHHHHhhCCCcccccccchhhcCcccHHHHHHHHHHHHhc
Confidence 9999999999999853 22234555555555542 123666655555444433444
No 34
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=99.86 E-value=2.3e-21 Score=227.85 Aligned_cols=281 Identities=14% Similarity=0.156 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHhhhcCCCCcchh---hhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCCceeeeE
Q 004259 376 AYFYSVGALLYGVVTGFWSPTYF---ETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEER 452 (765)
Q Consensus 376 a~~~s~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~ 452 (765)
|++|.++..++..++ ..+...+ ....+++.+..++..+|++.|++.++.+++ .++.+. +++. ...
T Consensus 60 aN~yFl~~~il~~ip-~~~~~~~~~~~pl~~vl~~t~iKd~~eD~rR~~~D~~iN~------~~~~v~---~~~~--~~~ 127 (1151)
T KOG0206|consen 60 ANLYFLFIAILQFIP-LSPFNPYTTLVPLLFVLGITAIKDAIEDYRRHKQDKEVNN------RKVEVL---RGDG--CFV 127 (1151)
T ss_pred HHHHHHHHHHHHcCc-ccccCccceeeceeeeehHHHHHHHHhhhhhhhccHHhhc------ceeEEe---cCCc--eee
Confidence 445555555655554 2232222 333445556679999999999999999887 677777 4321 368
Q ss_pred EeeccCcCCCCEEEEcCCCccCccEEEEe-----ccceeeccccCCCcceeccC--------------------------
Q 004259 453 EIDALLIQSGDTLKVLPGTKLPADGIVVW-----GTSYVNESMVTGEAVPVLKE-------------------------- 501 (765)
Q Consensus 453 ~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~-----g~~~Vdes~LTGEs~pv~k~-------------------------- 501 (765)
+..+++|++||+|.+..++.+|||.++++ |.|+|++++|+||+..+.|.
T Consensus 128 ~~~wk~~~vGd~v~v~~~~~~paD~llLsss~~~~~cyveT~nLDGEtnLK~k~~l~~~~~~~~~~~~~~~~~~i~cE~p 207 (1151)
T KOG0206|consen 128 EKKWKDVRVGDIVRVEKDEFVPADLLLLSSSDEDGICYVETANLDGETNLKVKQALECTSKLDSEDSLKNFKGWIECEDP 207 (1151)
T ss_pred eeccceeeeeeEEEeccCCccccceEEecCCCCCceeEEEEeecCCccccceeeehhhhhcccccccccccCCceEEcCC
Confidence 88999999999999999999999999995 77999999999999988771
Q ss_pred ---------------------CCCceeeeeeeec-ceEEEEEEEeCCcchHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 004259 502 ---------------------INSPVIGGTINLH-GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFV 559 (765)
Q Consensus 502 ---------------------~g~~v~aGt~~~~-g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~ 559 (765)
+.+.++.|+.+.+ ..+.+.|+.+|++|.+.+ ....+..+++++++..++....++
T Consensus 208 ~~~ly~f~g~l~~~~~~~pl~~~~~Llrg~~lrNT~~v~G~vv~tG~dtK~~~---n~~~~~~Krs~ier~~n~~i~~~~ 284 (1151)
T KOG0206|consen 208 NANLYTFVGNLELQGQIYPLSPDNLLLRGSRLRNTEWVYGVVVFTGHDTKLMQ---NSGKPPSKRSRIERKMNKIIILLF 284 (1151)
T ss_pred cccHhhhhhheeeccCCCCCcHHHcccCCceeccCcEEEEEEEEcCCcchHHH---hcCCCccccchhhhhhhhhHHHHH
Confidence 1234677888887 578999999999996654 455577888999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHhhc--CCCCCcc-cCCCc--chHHHHHHHHhheeeecccchhhhhHHHHHHHHHHHH------
Q 004259 560 PIVVTLALFTWLCWYVAGVL--GAYPEQW-LPENG--THFVFALMFSISVVVIACPCALGLATPTAVMVATGVG------ 628 (765)
Q Consensus 560 ~~~l~~a~~~~~~~~~~~~~--~~~~~~~-~~~~~--~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~~------ 628 (765)
++.++++++..+...+.... ...+..| +.... ......+..++.++....|..|...+.+.-.......
T Consensus 285 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~~il~~~liPISLyvsiEiik~~qs~fi~~D~~m 364 (1151)
T KOG0206|consen 285 VLLILMCLISAIGFAIWTRQDGRHNGEWWYLSPSEAAYAGFVHFLTFIILYQYLIPISLYVSIEIVKVLQSIFINNDLDM 364 (1151)
T ss_pred HHHHHHHHHHHhhhheeeeecccccCchhhhcCchHHHHHHHHHHHHHhhhhceEEEEEEEEeeehHHHHHHHcchHHHh
Confidence 88887777766654332211 1111111 11111 1234556667778888899999999888766555332
Q ss_pred ----hhcceEEecchHHhhhcCCcEEEecCCCccccCceEEEEEEec
Q 004259 629 ----ANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVF 671 (765)
Q Consensus 629 ----~~~gilik~~~~le~lg~v~~i~fDKTGTLT~g~~~v~~~~~~ 671 (765)
......+|..+..|+||+|++|+.|||||||+|.|++.++.+.
T Consensus 365 y~~e~d~~~~~rtsnl~eeLGqv~yIfSDKTGTLT~N~M~F~kCsi~ 411 (1151)
T KOG0206|consen 365 YDEETDTPAQARTSNLNEELGQVEYIFSDKTGTLTQNSMEFKKCSIN 411 (1151)
T ss_pred hhccCCCccccccCCchhhhcceeEEEEcCcCccccceeeeeccccc
Confidence 2467889999999999999999999999999999999998864
No 35
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.9e-14 Score=162.46 Aligned_cols=147 Identities=41% Similarity=0.656 Sum_probs=133.9
Q ss_pred ceEEEEEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcchhhhcccCCCCCCC
Q 004259 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKP 124 (765)
Q Consensus 45 ~~~~~~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~ 124 (765)
..+..+++.||+|++|++.+++.+++.+|+.++.+.+...++++.|||...+.+.+.+.++++||.+.+.+.... .
T Consensus 68 ~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~~----~ 143 (951)
T KOG0207|consen 68 ASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVNG----N 143 (951)
T ss_pred cceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhcccC----C
Confidence 346789999999999999999999999999999999999999999999999999999999999999876544321 1
Q ss_pred CcceeceeecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCceeEe
Q 004259 125 QGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (765)
Q Consensus 125 ~~~~~~~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 196 (765)
. ..++.|.|.||+|.+|+.+||+.+.+++||.++++++.++++.|.|||..++++++.+.+++.||.+...
T Consensus 144 ~-~~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~ 214 (951)
T KOG0207|consen 144 S-NQKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASVR 214 (951)
T ss_pred C-CCcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccceee
Confidence 1 1567899999999999999999999999999999999999999999999999999999999999988653
No 36
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.26 E-value=1.7e-11 Score=97.43 Aligned_cols=62 Identities=45% Similarity=0.737 Sum_probs=59.5
Q ss_pred eeecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCc
Q 004259 131 QYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFE 192 (765)
Q Consensus 131 ~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 192 (765)
+|+|+||+|++|+.+|+++|.+++||.++.+|+.++++.|.|++...++++|.++|+++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 47899999999999999999999999999999999999999999888999999999999995
No 37
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.22 E-value=9.9e-11 Score=141.32 Aligned_cols=142 Identities=28% Similarity=0.474 Sum_probs=112.6
Q ss_pred eEEEEEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcchhhhcccCC---C-C
Q 004259 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESST---S-G 121 (765)
Q Consensus 46 ~~~~~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~---~-~ 121 (765)
++.++.|+||+|++|+.+|++++++++||.++.+++. +..+..+ .+.+.+.++++++||++....++.. . +
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~---~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~ 77 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGT---ASAEALIETIKQAGYDASVSHPKAKPLTESS 77 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEec---CCHHHHHHHHHhcCCcccccccccccccccc
Confidence 4689999999999999999999999999999999984 4444432 4678999999999998875431110 0 0
Q ss_pred C---------------CCCcceeceeecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHH
Q 004259 122 P---------------KPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAI 186 (765)
Q Consensus 122 ~---------------~~~~~~~~~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i 186 (765)
. ......+..+.++||+|++|+..+++.+.+.+||.++.+++.+++..+.+ ..+.+++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~---~~s~~~I~~~I 154 (834)
T PRK10671 78 IPSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMG---SASPQDLVQAV 154 (834)
T ss_pred cCchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEc---cCCHHHHHHHH
Confidence 0 00011245688999999999999999999999999999999999988873 24678888889
Q ss_pred HhcCCceeE
Q 004259 187 EDAGFEASF 195 (765)
Q Consensus 187 ~~~Gy~~~~ 195 (765)
+++||.+.+
T Consensus 155 ~~~Gy~a~~ 163 (834)
T PRK10671 155 EKAGYGAEA 163 (834)
T ss_pred HhcCCCccc
Confidence 999998754
No 38
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.18 E-value=7.7e-11 Score=95.76 Aligned_cols=68 Identities=32% Similarity=0.558 Sum_probs=63.9
Q ss_pred eeceeecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCceeE
Q 004259 128 IVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195 (765)
Q Consensus 128 ~~~~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 195 (765)
++..+.|+||+|.+|+.+|+++|++++||.++.+++..+++.|.|++...+.++|+++++++||++..
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~ 69 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEE 69 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeee
Confidence 34679999999999999999999999999999999999999999999889999999999999998754
No 39
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.12 E-value=2.8e-10 Score=90.42 Aligned_cols=62 Identities=44% Similarity=0.670 Sum_probs=59.1
Q ss_pred EEEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcc
Q 004259 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFE 110 (765)
Q Consensus 49 ~~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 110 (765)
+|.|+||+|++|+++|+++|++++||.++.+|+.++++.+.++++..+++++.++++++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 57899999999999999999999999999999999999999998878889999999999995
No 40
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.09 E-value=5.1e-10 Score=90.97 Aligned_cols=68 Identities=44% Similarity=0.663 Sum_probs=63.8
Q ss_pred ceEEEEEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcchh
Q 004259 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (765)
Q Consensus 45 ~~~~~~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 112 (765)
|++..+.++||+|.+|+.+++++|++++||.++.+++..+.+.+.+++...+.+++.++++++||.+.
T Consensus 1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~ 68 (71)
T COG2608 1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVE 68 (71)
T ss_pred CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCee
Confidence 45788999999999999999999999999999999999999999999877899999999999999864
No 41
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.90 E-value=1.7e-09 Score=109.20 Aligned_cols=86 Identities=37% Similarity=0.502 Sum_probs=72.0
Q ss_pred CcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHHHccCCChHHHHHHHHHHhccCCCCCCCCCCCCCCCcCcCC
Q 004259 647 IKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTG 726 (765)
Q Consensus 647 v~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~~a~~~e~~s~hPia~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (765)
|++||||||||||+|++.+ .. .+...+++++...|+.|+||++.+++.++....
T Consensus 1 i~~i~fDktGTLt~~~~~v---~~---~~~~~~~~~~~~~~~~s~~p~~~~~~~~~~~~~-------------------- 54 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSV---AP---PSNEAALAIAAALEQGSEHPIGKAIVEFAKNHQ-------------------- 54 (215)
T ss_dssp ESEEEEECCTTTBESHHEE---ES---CSHHHHHHHHHHHHCTSTSHHHHHHHHHHHHHH--------------------
T ss_pred CeEEEEecCCCcccCeEEE---Ee---ccHHHHHHHHHHhhhcCCCcchhhhhhhhhhcc--------------------
Confidence 5899999999999999999 11 567889999999999999999999999987651
Q ss_pred CCcccCCCceeeecCCeeEEEEcCeEEEeecccccc
Q 004259 727 SGWLLDVSDFSALPGRGIQCFISGKQVLVSFRFHRT 762 (765)
Q Consensus 727 ~~~~~~~~~~~~~~G~Gv~~~~~g~~~~vG~~~~~~ 762 (765)
.. +.+.++.+.+|+|+.+.+++. +. |+.+|+.
T Consensus 55 -~~-~~~~~~~~~~~~~~~~~~~~~-~~-g~~~~~~ 86 (215)
T PF00702_consen 55 -WS-KSLESFSEFIGRGISGDVDGI-YL-GSPEWIH 86 (215)
T ss_dssp -HH-SCCEEEEEETTTEEEEEEHCH-EE-HHHHHHH
T ss_pred -ch-hhhhhheeeeecccccccccc-cc-ccchhhh
Confidence 00 116789999999999999998 55 8888763
No 42
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.13 E-value=3.4e-06 Score=97.92 Aligned_cols=66 Identities=44% Similarity=0.732 Sum_probs=61.2
Q ss_pred eceeecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCC-HHHHHHHHHhcCCceeE
Q 004259 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVIS-KDDIANAIEDAGFEASF 195 (765)
Q Consensus 129 ~~~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~-~~~i~~~i~~~Gy~~~~ 195 (765)
+..+.++||+|++|+++|| +|++++||.++++|+.++++.+.|++...+ .+++.+.+++.||.+..
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 4579999999999999999 999999999999999999999999987666 79999999999998753
No 43
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.61 E-value=0.00027 Score=55.03 Aligned_cols=65 Identities=34% Similarity=0.493 Sum_probs=57.6
Q ss_pred eceeecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCce
Q 004259 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEA 193 (765)
Q Consensus 129 ~~~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~ 193 (765)
+..+.+.|++|..|+..+++.+...+++....+++..++..+.|++...+...+...+++.||.+
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 45689999999999999999999999999999999999999999877667788877788888864
No 44
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.50 E-value=0.00072 Score=52.49 Aligned_cols=67 Identities=34% Similarity=0.523 Sum_probs=55.9
Q ss_pred ceEEEEEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcch
Q 004259 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEA 111 (765)
Q Consensus 45 ~~~~~~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~ 111 (765)
|++..+.+.||+|..|+..+++.+...+++....+++......+.+++.......+...+...||.+
T Consensus 1 ~~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 1 KQKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred CcEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 3567899999999999999999999999999999999999999888765556666666667777753
No 45
>PLN02957 copper, zinc superoxide dismutase
Probab=97.30 E-value=0.00083 Score=68.61 Aligned_cols=68 Identities=25% Similarity=0.452 Sum_probs=59.6
Q ss_pred eeceeecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCceeEeecC
Q 004259 128 IVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSS 199 (765)
Q Consensus 128 ~~~~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~ 199 (765)
.++.+.+ +|+|.+|+.++++.+++++||.++.+++..+++.+.|+ ...+++.+.+++.||.+.+....
T Consensus 6 ~~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~---~~~~~I~~aIe~~Gy~a~~~~~~ 73 (238)
T PLN02957 6 LLTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS---SPVKAMTAALEQTGRKARLIGQG 73 (238)
T ss_pred EEEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec---CCHHHHHHHHHHcCCcEEEecCC
Confidence 3456888 79999999999999999999999999999999999983 46788999999999998776544
No 46
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=97.18 E-value=0.00077 Score=64.03 Aligned_cols=63 Identities=33% Similarity=0.693 Sum_probs=56.8
Q ss_pred eceeecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCceeE
Q 004259 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195 (765)
Q Consensus 129 ~~~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 195 (765)
+..|.| .|+|.+|+..+.+.|+.++||.++++++....+.|. ....+.+|.+.|+.+|-++.+
T Consensus 8 ~~efaV-~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~---ts~p~s~i~~~le~tGr~Avl 70 (247)
T KOG4656|consen 8 EAEFAV-QMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVE---TSVPPSEIQNTLENTGRDAVL 70 (247)
T ss_pred eEEEEE-echhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEE---ccCChHHHHHHHHhhChheEE
Confidence 456777 699999999999999999999999999999999998 556789999999999998865
No 47
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.0014 Score=53.54 Aligned_cols=57 Identities=19% Similarity=0.357 Sum_probs=50.6
Q ss_pred cccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcC-Cce
Q 004259 134 IGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAG-FEA 193 (765)
Q Consensus 134 i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~G-y~~ 193 (765)
.-.|+|.+|..+|++.++.++||.++.++...+++.+. +..++..+++.+++.| ...
T Consensus 10 kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~---g~~~p~~vl~~l~k~~~k~~ 67 (73)
T KOG1603|consen 10 KVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVK---GNVDPVKLLKKLKKTGGKRA 67 (73)
T ss_pred EECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEE---EecCHHHHHHHHHhcCCCce
Confidence 34899999999999999999999999999999999999 3378999999999877 443
No 48
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=96.91 E-value=0.0031 Score=60.05 Aligned_cols=63 Identities=32% Similarity=0.545 Sum_probs=54.4
Q ss_pred EEEEEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcchhh
Q 004259 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (765)
Q Consensus 47 ~~~~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 113 (765)
+.+|.|+ |+|.+|++.+++.|+.++|++++++++..+.+.+.. ...+.++.+.++..|-++.+
T Consensus 8 ~~efaV~-M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~t---s~p~s~i~~~le~tGr~Avl 70 (247)
T KOG4656|consen 8 EAEFAVQ-MTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVET---SVPPSEIQNTLENTGRDAVL 70 (247)
T ss_pred eEEEEEe-chhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEc---cCChHHHHHHHHhhChheEE
Confidence 5667664 899999999999999999999999999999998864 35578999999999987754
No 49
>PLN02957 copper, zinc superoxide dismutase
Probab=96.71 E-value=0.0066 Score=62.04 Aligned_cols=66 Identities=24% Similarity=0.366 Sum_probs=56.7
Q ss_pred eEEEEEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcchhhhc
Q 004259 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILA 115 (765)
Q Consensus 46 ~~~~~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 115 (765)
+++.+.+ +|+|.+|+.++++.+++.+||..+.+++..+++.+.++ ...+++.+.+++.||.+.+..
T Consensus 6 ~~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~---~~~~~I~~aIe~~Gy~a~~~~ 71 (238)
T PLN02957 6 LLTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS---SPVKAMTAALEQTGRKARLIG 71 (238)
T ss_pred EEEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec---CCHHHHHHHHHHcCCcEEEec
Confidence 4567888 79999999999999999999999999999999998873 457788899999999876543
No 50
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=96.39 E-value=0.011 Score=70.86 Aligned_cols=67 Identities=31% Similarity=0.515 Sum_probs=56.7
Q ss_pred ceEEEEEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcchhh
Q 004259 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (765)
Q Consensus 45 ~~~~~~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 113 (765)
..+..+.++||+|++|++++++.+.+.+||.++++++.+++..+.+++. .. +++.+.+++.||.+..
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~-~~-~~I~~aI~~~Gy~a~~ 118 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADND-IR-AQVESAVQKAGFSLRD 118 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEeccc-ch-HHHHHHHHhccccccc
Confidence 3456789999999999999999999999999999999999988888654 23 6677778889997643
No 51
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=96.31 E-value=0.011 Score=48.36 Aligned_cols=55 Identities=24% Similarity=0.420 Sum_probs=48.2
Q ss_pred EeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcC
Q 004259 51 GVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAG 108 (765)
Q Consensus 51 ~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G 108 (765)
..-.|+|.+|+.++++.++.++||.++.++...+++++.-. .++..+.+.+.+.|
T Consensus 9 ~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~---~~p~~vl~~l~k~~ 63 (73)
T KOG1603|consen 9 LKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGN---VDPVKLLKKLKKTG 63 (73)
T ss_pred EEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEe---cCHHHHHHHHHhcC
Confidence 34489999999999999999999999999999999999754 56888888888766
No 52
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=93.75 E-value=3.6 Score=51.72 Aligned_cols=199 Identities=17% Similarity=0.236 Sum_probs=103.8
Q ss_pred EEEEEeCCCCCh----hhHHHHHHhhhCCCCeeEEEEEeccCEEEEE--ECCCCCCHH----HHHHHhHhcC--cchhhh
Q 004259 47 RIQVGVTGMTCA----ACSNSVEGALMGLKGVAKASVALLQNKADVV--FDPDLVKDE----DIKNAIEDAG--FEAEIL 114 (765)
Q Consensus 47 ~~~~~i~gm~C~----~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~--~~~~~~~~~----~i~~~i~~~G--y~~~~~ 114 (765)
.++..-+|.+=. .-...+|++++.++|+.++...-..+...+. ++.. .+.+ ++.+.+.+.- .+....
T Consensus 44 ~V~~~~pgas~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~g~s~i~v~f~~~-~d~~~a~~~v~~~i~~~~~~LP~~~~ 122 (1021)
T PF00873_consen 44 SVTTSYPGASPEEVEQLVTKPLEEALSSVEGVKEIRSTSREGSSSITVEFDDG-TDIDEALQEVREKIDQIRSDLPPGVE 122 (1021)
T ss_dssp EEEEE-TTS-HHHHHHHTHHHHHHTHCSSTTEEEEEEEETTSEEEEEEEESTT-S-HHHHHHHHHHHHHHHGGGS-HHHH
T ss_pred EEEEecCcCCHHHHHHHHHHHHHHHHcCCCCeEEEEEEecCCcEEEEEEeccc-cCHHHHHHHHHHHHHhhhhhCccccc
Confidence 455566665532 3457889999999999999887777766654 5544 3333 3444444432 121110
Q ss_pred cccCC-CCCCCCcceeceeecc--cccc----hhhHHHHHhhhcCCCCeeeEEeee-ccCeEEEEeCCCC-----CCHHH
Q 004259 115 AESST-SGPKPQGTIVGQYTIG--GMTC----AACVNSVEGILRGLPGVKRAVVAL-ATSLGEVEYDPTV-----ISKDD 181 (765)
Q Consensus 115 ~~~~~-~~~~~~~~~~~~~~i~--gm~C----~~C~~~Ie~~l~~~~GV~~~~vn~-~~~~~~v~~~~~~-----~~~~~ 181 (765)
.+.-. ..........+.+.-+ +++- ....+.++..|++++||.++++.= ..+.+.|.+||.. ++..+
T Consensus 123 ~p~i~~~~~~~~~i~~~~l~~~~~~~~~~~l~~~~~~~l~~~L~~i~gV~~v~~~G~~~~ei~i~~d~~kl~~~gls~~~ 202 (1021)
T PF00873_consen 123 EPQIFKFDPSDSPIMILALTSDDGTLDLKELRDYAEEQLKPRLERIPGVARVDISGGREREIQIELDPEKLAAYGLSLSD 202 (1021)
T ss_dssp HHEEEEEEEECCEEEEEEEEESSSSS-HHHHHHHHHHCTHHHHHTSTTEEEEEESSS--EEEEEEE-HHHHHHTT--HHH
T ss_pred CCceeeccCCCceeEEEEeccCCCCCCHHHHHHHHHHHHHHhccceeEEEEEEeccchhhhhhheechhhhhhhCCCHHH
Confidence 11000 0001111222223322 1221 123467999999999999999763 5667889988843 67889
Q ss_pred HHHHHHhcCCceeEee-cCCcceeEEEEecccchhhhHHHHhhhc--------cCCCceEEEeecCCCeEEEEecC
Q 004259 182 IANAIEDAGFEASFVQ-SSGQDKILLQVTGVLCELDAHFLEGILS--------NFKGVRQFRFDKISGELEVLFDP 248 (765)
Q Consensus 182 i~~~i~~~Gy~~~~~~-~~~~~~~~~~i~gm~c~~ca~~ie~~l~--------~~~GV~~v~vn~~~~~~~V~ydp 248 (765)
+.++|.........=. ..+..+..++..|.... .+.+++..- .+..|.+++..........+||.
T Consensus 203 v~~~l~~~n~~~~~G~~~~~~~~~~i~~~~~~~~--~~~l~~~~i~~~~g~~i~L~dvA~V~~~~~~~~~~~~~nG 276 (1021)
T PF00873_consen 203 VAQALQANNVNQPAGTIEEGNQEILIRVDGEFKS--LEDLENIPIRNSDGRPIRLKDVATVEDGYEDPTSIARFNG 276 (1021)
T ss_dssp HHHHHHHHSCEEEEEEETTTTEEEEEEECES--S--HHHHHT-EEEETTSEEEEGGGTEEEEEEESSSSEEEEETT
T ss_pred HHHHHHHhhhhccCCccchhhHHHhhhhhhhcCC--hhhhceeEEEeccccccccccceEEEeecccchhhhhccc
Confidence 9999988766542211 22334555555554432 223443322 12345666666666666666663
No 53
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=92.71 E-value=0.68 Score=38.71 Aligned_cols=66 Identities=33% Similarity=0.544 Sum_probs=52.9
Q ss_pred ceeecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCceeE
Q 004259 130 GQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195 (765)
Q Consensus 130 ~~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 195 (765)
..+.+.++.|..|...++..+...+++....++.......+.+++...+...+...+++.||..++
T Consensus 25 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 90 (92)
T TIGR02052 25 VTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPSSL 90 (92)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence 356789999999999999999999999989999988888887765444566666666778887643
No 54
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=90.65 E-value=1.4 Score=36.77 Aligned_cols=64 Identities=38% Similarity=0.597 Sum_probs=47.0
Q ss_pred EEEEEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcc
Q 004259 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFE 110 (765)
Q Consensus 47 ~~~~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 110 (765)
+..+.+.++.|..|...++..+...+++.....+.......+.++........+.....+.||.
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 87 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYP 87 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4567799999999999999999999998888888877776666543323444444444556665
No 55
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.13 E-value=15 Score=41.93 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=31.3
Q ss_pred CCCceeeeEEeeccCcCCCCEEEEcCCCccCccEEEEec
Q 004259 444 KVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWG 482 (765)
Q Consensus 444 ~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~g 482 (765)
||| ...++|..-|+.||+|-++||+.-||.+.=+++
T Consensus 162 RDG---hlm~lP~~LLVeGDiIa~RPGQeafan~~g~~d 197 (1354)
T KOG4383|consen 162 RDG---HLMELPRILLVEGDIIAFRPGQEAFANCEGFDD 197 (1354)
T ss_pred ccC---eeeecceeEEEeccEEEecCCccccccccccCC
Confidence 677 678899999999999999999999998765554
No 56
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=86.87 E-value=1.2 Score=42.83 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=43.1
Q ss_pred hhhHHHHHhhhcCCCCeeeEEeeeccCe-------------------EEEEeCCCCCCHHHHHHHHHh
Q 004259 140 AACVNSVEGILRGLPGVKRAVVALATSL-------------------GEVEYDPTVISKDDIANAIED 188 (765)
Q Consensus 140 ~~C~~~Ie~~l~~~~GV~~~~vn~~~~~-------------------~~v~~~~~~~~~~~i~~~i~~ 188 (765)
++|=|-+|..+.+++||.++.+-++.+. +.|.|||..++.++|++..=+
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~ 77 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQ 77 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHH
Confidence 5789999999999999999999887765 899999999999999886643
No 57
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=85.27 E-value=1.2e+02 Score=38.47 Aligned_cols=141 Identities=14% Similarity=0.185 Sum_probs=77.5
Q ss_pred EEEEEeCCCCCh----hhHHHHHHhhhCCCCeeEEEEEec-c--CEEEEEECCCCCCH----HHHHHHhHhc--Ccchhh
Q 004259 47 RIQVGVTGMTCA----ACSNSVEGALMGLKGVAKASVALL-Q--NKADVVFDPDLVKD----EDIKNAIEDA--GFEAEI 113 (765)
Q Consensus 47 ~~~~~i~gm~C~----~C~~~Ie~~l~~~~Gv~~~~v~~~-~--~~~~v~~~~~~~~~----~~i~~~i~~~--Gy~~~~ 113 (765)
.+...-+|.+=. .-.+.+|++++.++|+.++..... . ....+.+++.. +. .++.+.+... .++...
T Consensus 44 ~V~~~~pGas~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~~g~s~i~v~f~~~~-d~~~a~~~v~~~l~~~~~~LP~~~ 122 (1044)
T TIGR00915 44 TVSASYPGASAQTVQDTVTQVIEQQMNGIDGLRYMSSESDSDGSMTITLTFEQGT-DPDIAQVQVQNKLQLATPLLPQEV 122 (1044)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEEcCCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHhhCCCcc
Confidence 345555665532 234677888999999998876432 3 34455555442 22 3444444432 121110
Q ss_pred hcccCCCCCCCCcceeceeeccc----ccc----hhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCC-----CCHH
Q 004259 114 LAESSTSGPKPQGTIVGQYTIGG----MTC----AACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTV-----ISKD 180 (765)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~i~g----m~C----~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~-----~~~~ 180 (765)
+.+...........-..+.+.+ .+- ..=.+.++..|++++||.++++.-....+.|..||.. +++.
T Consensus 123 -~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~ 201 (1044)
T TIGR00915 123 -QRQGVRVEKASSNFLMVIGLVSTDGSMTKEDLSDYIASNMVDPISRLEGVGDVQLFGSQYAMRIWLDPAKLNSYQLTPA 201 (1044)
T ss_pred -cCCCcEEeCCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEecCCceEEEEEECHHHHHHcCCCHH
Confidence 0000000000000111222222 111 1123568999999999999999877777889988853 6788
Q ss_pred HHHHHHHhc
Q 004259 181 DIANAIEDA 189 (765)
Q Consensus 181 ~i~~~i~~~ 189 (765)
++.++|+..
T Consensus 202 dV~~~i~~~ 210 (1044)
T TIGR00915 202 DVISAIQAQ 210 (1044)
T ss_pred HHHHHHHHh
Confidence 999999864
No 58
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=84.34 E-value=1.2e+02 Score=38.18 Aligned_cols=140 Identities=15% Similarity=0.240 Sum_probs=78.5
Q ss_pred EEEEeCCCCCh----hhHHHHHHhhhCCCCeeEEEEEe---ccCEEEEEECCCCCCHH----HHHHHhHhc--Ccchhhh
Q 004259 48 IQVGVTGMTCA----ACSNSVEGALMGLKGVAKASVAL---LQNKADVVFDPDLVKDE----DIKNAIEDA--GFEAEIL 114 (765)
Q Consensus 48 ~~~~i~gm~C~----~C~~~Ie~~l~~~~Gv~~~~v~~---~~~~~~v~~~~~~~~~~----~i~~~i~~~--Gy~~~~~ 114 (765)
++..-+|.+=. .-...+|++++.++|+.+++..- ....+.+.++... +.+ ++.+.+.+. .++...
T Consensus 45 V~t~ypGasp~~vE~~Vt~plE~~l~~v~gv~~i~S~S~~~G~s~i~v~f~~g~-d~~~a~~~V~~~v~~~~~~LP~~v- 122 (1037)
T PRK10555 45 ITANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGT-DPDEAVQQVQNQLQSAMRKLPQAV- 122 (1037)
T ss_pred EEEecCCCCHHHHHHHHhHHHHHHhcCCCCceEEEEEecCCCeEEEEEEEECCC-CHHHHHHHHHHHHHHHHHhCCCcc-
Confidence 44444665432 23477899999999999988743 2244566665542 333 444444432 111110
Q ss_pred cccCCC--CCCCCcceeceeec-cc-ccc----hhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCC-----CCHHH
Q 004259 115 AESSTS--GPKPQGTIVGQYTI-GG-MTC----AACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTV-----ISKDD 181 (765)
Q Consensus 115 ~~~~~~--~~~~~~~~~~~~~i-~g-m~C----~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~-----~~~~~ 181 (765)
..+... .........+.+.- ++ ++- .--++.++..|++++||.+++++-....+.|..|+.. ++..+
T Consensus 123 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~~ 202 (1037)
T PRK10555 123 QNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKD 202 (1037)
T ss_pred ccCCceEeCCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCCCHHH
Confidence 000000 00011112222211 22 221 1124678999999999999998865667889988843 67888
Q ss_pred HHHHHHhc
Q 004259 182 IANAIEDA 189 (765)
Q Consensus 182 i~~~i~~~ 189 (765)
+.++|+..
T Consensus 203 v~~al~~~ 210 (1037)
T PRK10555 203 VTDAIESQ 210 (1037)
T ss_pred HHHHHHHh
Confidence 99998764
No 59
>PRK09577 multidrug efflux protein; Reviewed
Probab=84.22 E-value=1.3e+02 Score=38.07 Aligned_cols=145 Identities=16% Similarity=0.197 Sum_probs=78.6
Q ss_pred EEEEEeCCCCCh----hhHHHHHHhhhCCCCeeEEEEEeccCE--EEEEECCCCCCH----HHHHHHhHhcC--cchhhh
Q 004259 47 RIQVGVTGMTCA----ACSNSVEGALMGLKGVAKASVALLQNK--ADVVFDPDLVKD----EDIKNAIEDAG--FEAEIL 114 (765)
Q Consensus 47 ~~~~~i~gm~C~----~C~~~Ie~~l~~~~Gv~~~~v~~~~~~--~~v~~~~~~~~~----~~i~~~i~~~G--y~~~~~ 114 (765)
.++..-+|.+=. .=...+|++++.++|+.+++..-..+. +.+.++.. .+. .++.+.+.+.. .+....
T Consensus 44 ~V~t~~pGasp~~VE~~Vt~plE~~L~~v~gv~~i~S~S~~G~s~I~v~f~~g-~d~~~a~~~V~~~v~~~~~~LP~~~~ 122 (1032)
T PRK09577 44 SIYATYPGASAQVVEESVTALIEREMNGAPGLLYTSATSSAGQASLSLTFKQG-VNADLAAVEVQNRLKTVEARLPEPVR 122 (1032)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECC-CChHHHHHHHHHHHHHHHHhCCcccc
Confidence 345555566533 244778899999999998776544444 44455543 233 34444444321 111100
Q ss_pred cccCCC-CCCCCcceeceeeccc--ccchh----hHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCC-----CCHHHH
Q 004259 115 AESSTS-GPKPQGTIVGQYTIGG--MTCAA----CVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTV-----ISKDDI 182 (765)
Q Consensus 115 ~~~~~~-~~~~~~~~~~~~~i~g--m~C~~----C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~-----~~~~~i 182 (765)
.+.... .........+.+..++ .+-.. -.+.++..|+++|||.+++++-....+.|..||.. ++..++
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~V 202 (1032)
T PRK09577 123 RDGIQVEKAADNIQLIVSLTSDDGRLTGVELGEYASANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDI 202 (1032)
T ss_pred cCCceEeccCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHHH
Confidence 000000 0000001112222221 11111 23679999999999999998866566677777743 678899
Q ss_pred HHHHHhcCCc
Q 004259 183 ANAIEDAGFE 192 (765)
Q Consensus 183 ~~~i~~~Gy~ 192 (765)
.++|+..+..
T Consensus 203 ~~~l~~~n~~ 212 (1032)
T PRK09577 203 ASAVRAHNAR 212 (1032)
T ss_pred HHHHHHhCCc
Confidence 9999876543
No 60
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=84.15 E-value=5.6 Score=27.65 Aligned_cols=58 Identities=48% Similarity=0.878 Sum_probs=41.8
Q ss_pred cccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCc
Q 004259 134 IGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFE 192 (765)
Q Consensus 134 i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 192 (765)
+.++.|..|...++..+...+++.....++......+.++.. .....+...+...|+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 61 (63)
T cd00371 4 VEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPE-VSPEELLEAIEDAGYK 61 (63)
T ss_pred ECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCC-CCHHHHHHHHHHcCCC
Confidence 568899999999999888889988888888777777776543 3444444444555543
No 61
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=83.26 E-value=1.4e+02 Score=37.77 Aligned_cols=142 Identities=13% Similarity=0.184 Sum_probs=77.9
Q ss_pred EEEEEeCCCCChh----hHHHHHHhhhCCCCeeEEEEEeccCEE--EEEECCCCCCH----HHHHHHhHhcC--cchhhh
Q 004259 47 RIQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVALLQNKA--DVVFDPDLVKD----EDIKNAIEDAG--FEAEIL 114 (765)
Q Consensus 47 ~~~~~i~gm~C~~----C~~~Ie~~l~~~~Gv~~~~v~~~~~~~--~v~~~~~~~~~----~~i~~~i~~~G--y~~~~~ 114 (765)
.+...-+|.+=.. -...+|++++.++|+.+++..-..+.. .+.++.. .+. .++.+.+.+.- .+....
T Consensus 55 ~V~t~~pGas~~~vE~~Vt~piE~~l~~v~gv~~i~S~S~~G~s~i~v~f~~g-~d~~~a~~ev~~~i~~~~~~LP~~~~ 133 (1040)
T PRK10503 55 QVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLT-LPLDVAEQEVQAAINAATNLLPSDLP 133 (1040)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCccEEEEEecCCeEEEEEEEECC-CChHHHHHHHHHHHHHHHHhCCCccC
Confidence 3455667765443 447889999999999998876545544 4445543 233 34444444321 110000
Q ss_pred cccCCCCCCCCcceeceeeccc--ccch---h-hHHHHHhhhcCCCCeeeEEeee-ccCeEEEEeCCCC-----CCHHHH
Q 004259 115 AESSTSGPKPQGTIVGQYTIGG--MTCA---A-CVNSVEGILRGLPGVKRAVVAL-ATSLGEVEYDPTV-----ISKDDI 182 (765)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~i~g--m~C~---~-C~~~Ie~~l~~~~GV~~~~vn~-~~~~~~v~~~~~~-----~~~~~i 182 (765)
.++...........-..+.+.+ +.=. . -.+.++..|+++|||.++++.= ....+.|.+|+.. +++.++
T Consensus 134 ~~p~~~~~~~~~~pv~~~~l~~~~~~~~~L~~~~~~~l~~~L~~i~gV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~~v 213 (1040)
T PRK10503 134 NPPVYSKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETV 213 (1040)
T ss_pred CCCEEEEeCCCCCceEEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecCCCceEEEEEECHHHHHHcCCCHHHH
Confidence 0000000000001112233322 1100 1 1257999999999999988763 3467899988843 577888
Q ss_pred HHHHHhc
Q 004259 183 ANAIEDA 189 (765)
Q Consensus 183 ~~~i~~~ 189 (765)
.++++..
T Consensus 214 ~~ai~~~ 220 (1040)
T PRK10503 214 RTAITGA 220 (1040)
T ss_pred HHHHHHh
Confidence 8888754
No 62
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=82.63 E-value=2.6 Score=39.76 Aligned_cols=49 Identities=22% Similarity=0.458 Sum_probs=41.3
Q ss_pred hhhHHHHHhhhcCCCCeeeEEeeeccC--------------eEEEEeCCCCCCHHHHHHHHHh
Q 004259 140 AACVNSVEGILRGLPGVKRAVVALATS--------------LGEVEYDPTVISKDDIANAIED 188 (765)
Q Consensus 140 ~~C~~~Ie~~l~~~~GV~~~~vn~~~~--------------~~~v~~~~~~~~~~~i~~~i~~ 188 (765)
++|=|-+|..+.+++||.++.+-++.+ .+.|.|||..++.++|++..=+
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~ 70 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFE 70 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHH
Confidence 578899999999999999999876553 3789999999999999886644
No 63
>PRK13748 putative mercuric reductase; Provisional
Probab=80.73 E-value=4.6 Score=47.11 Aligned_cols=67 Identities=27% Similarity=0.531 Sum_probs=55.0
Q ss_pred eeecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCceeEeec
Q 004259 131 QYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQS 198 (765)
Q Consensus 131 ~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 198 (765)
.+.+++|+|.+|..+++..+...+++....+++..+...+.+++. .....+...+++.||.......
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~-~~~~~i~~~i~~~g~~~~~~~~ 69 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVG-TSPDALTAAVAGLGYRATLADA 69 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCC-CCHHHHHHHHHHcCCeeeccCc
Confidence 356889999999999999999999999999999999988887653 4566776777889998765443
No 64
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=80.36 E-value=2.6 Score=41.00 Aligned_cols=49 Identities=24% Similarity=0.508 Sum_probs=42.2
Q ss_pred hhhHHHHHhhhcCCCCeeeEEeeeccCe-------------------EEEEeCCCCCCHHHHHHHHHh
Q 004259 140 AACVNSVEGILRGLPGVKRAVVALATSL-------------------GEVEYDPTVISKDDIANAIED 188 (765)
Q Consensus 140 ~~C~~~Ie~~l~~~~GV~~~~vn~~~~~-------------------~~v~~~~~~~~~~~i~~~i~~ 188 (765)
.+|=|-+|....+++||.++++-++.+. +.|.|||..++.++|++..=+
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff~ 82 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFFS 82 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHHH
Confidence 4688889999999999999999887664 889999999999999886643
No 65
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=79.69 E-value=3.1 Score=41.29 Aligned_cols=48 Identities=31% Similarity=0.487 Sum_probs=41.7
Q ss_pred hhhHHHHHhhhcCCCCeeeEEeeeccC-------------------eEEEEeCCCCCCHHHHHHHHH
Q 004259 140 AACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAIE 187 (765)
Q Consensus 140 ~~C~~~Ie~~l~~~~GV~~~~vn~~~~-------------------~~~v~~~~~~~~~~~i~~~i~ 187 (765)
++|=|-+|..+++++||.++.+-++.+ .+.|.|||..++.++|++..=
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff 118 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFW 118 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHH
Confidence 568899999999999999999988733 478999999999999988663
No 66
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=79.01 E-value=1.9e+02 Score=36.67 Aligned_cols=142 Identities=14% Similarity=0.179 Sum_probs=78.6
Q ss_pred EEEEEeCCCCCh----hhHHHHHHhhhCCCCeeEEEEEec---cCEEEEEECCCCCCHH----HHHHHhHhcC--cchhh
Q 004259 47 RIQVGVTGMTCA----ACSNSVEGALMGLKGVAKASVALL---QNKADVVFDPDLVKDE----DIKNAIEDAG--FEAEI 113 (765)
Q Consensus 47 ~~~~~i~gm~C~----~C~~~Ie~~l~~~~Gv~~~~v~~~---~~~~~v~~~~~~~~~~----~i~~~i~~~G--y~~~~ 113 (765)
.++..-+|.+=. .-...+|++++.++|+.+++..-. ...+.+.++.. .+.+ ++.+.+.... ++...
T Consensus 44 ~V~t~ypGasp~~vE~~Vt~piE~~l~~v~gi~~i~S~S~~~G~s~I~v~f~~g-~d~~~a~~~V~~~i~~~~~~LP~~~ 122 (1049)
T PRK15127 44 TISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESG-TDADIAQVQVQNKLQLAMPLLPQEV 122 (1049)
T ss_pred EEEEEeCCCCHHHHHHHhhHHHHHHhcCCCCceEEEEEecCCceEEEEEEEECC-CChHHHHHHHHHHHHHHHhhCCCcc
Confidence 344555565422 344788899999999999886542 33455666554 3333 4555554432 21110
Q ss_pred hcccCCC-CCCCCcceeceeec-cc-ccc-hhh---HHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCC-----CCHHH
Q 004259 114 LAESSTS-GPKPQGTIVGQYTI-GG-MTC-AAC---VNSVEGILRGLPGVKRAVVALATSLGEVEYDPTV-----ISKDD 181 (765)
Q Consensus 114 ~~~~~~~-~~~~~~~~~~~~~i-~g-m~C-~~C---~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~-----~~~~~ 181 (765)
..+.... .........+.+.- ++ ++= .-+ .+.++..|+++|||.++++.-..+.+.|..||.. +++.+
T Consensus 123 ~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vDp~kl~~~gls~~~ 202 (1049)
T PRK15127 123 QQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVD 202 (1049)
T ss_pred cCCCcEEecCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceEEEEEeCHHHHHHcCCCHHH
Confidence 0000000 00000111112211 11 111 112 3568999999999999998765667889988843 57888
Q ss_pred HHHHHHhc
Q 004259 182 IANAIEDA 189 (765)
Q Consensus 182 i~~~i~~~ 189 (765)
+.++++..
T Consensus 203 V~~~l~~~ 210 (1049)
T PRK15127 203 VINAIKAQ 210 (1049)
T ss_pred HHHHHHHh
Confidence 88888855
No 67
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=76.47 E-value=6 Score=37.40 Aligned_cols=49 Identities=35% Similarity=0.543 Sum_probs=41.3
Q ss_pred hhhHHHHHhhhcCCCCeeeEEeeeccC-------------------eEEEEeCCCCCCHHHHHHHHHh
Q 004259 140 AACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAIED 188 (765)
Q Consensus 140 ~~C~~~Ie~~l~~~~GV~~~~vn~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~ 188 (765)
.+|=|.+|..+.+++||.++.+-++.+ .+.|.|||..++.++|++..-+
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~ 74 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFR 74 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHH
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHH
Confidence 578999999999999999999988655 5689999999999999887644
No 68
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=75.35 E-value=14 Score=29.48 Aligned_cols=67 Identities=21% Similarity=0.325 Sum_probs=45.0
Q ss_pred eeecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCceeEeecCCcceeEEEE
Q 004259 131 QYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSGQDKILLQV 208 (765)
Q Consensus 131 ~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~i 208 (765)
.+.+.|+.|+...-.+.+++++++.= ..+.|..|.. ...++|...++..||....... ..+.+++.|
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~-~~~~di~~~~~~~g~~~~~~~~-~~~~~~i~I 68 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDP-AAVEDIPRWCEENGYEVVEVEE-EGGEYRILI 68 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESST-THHHHHHHHHHHHTEEEEEEEE-SSSSEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCc-cHHHHHHHHHHHCCCEEEEEEE-eCCEEEEEE
Confidence 46678999999999999999997532 3344454433 4578999999999998544333 234444443
No 69
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=75.28 E-value=23 Score=24.16 Aligned_cols=41 Identities=46% Similarity=0.710 Sum_probs=31.9
Q ss_pred EeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEEC
Q 004259 51 GVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFD 91 (765)
Q Consensus 51 ~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~ 91 (765)
.+.++.|..|...++..+...+++.....++......+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYD 43 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEEC
Confidence 46789999999999999888888777777766666555543
No 70
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=74.63 E-value=2.4e+02 Score=35.73 Aligned_cols=292 Identities=14% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHhhhCCCCeeEE--EEEeccCEEEEEECCCCCC---HHHHHHHhHhcCcchhhhcccCCCCCCCCcceeceeeccc
Q 004259 62 NSVEGALMGLKGVAKA--SVALLQNKADVVFDPDLVK---DEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQYTIGG 136 (765)
Q Consensus 62 ~~Ie~~l~~~~Gv~~~--~v~~~~~~~~v~~~~~~~~---~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~~~i~g 136 (765)
..+|++++.++|+.++ ..........+.++..... .+++.+.+.+..-+...-..+..............+.+.+
T Consensus 67 ~piE~~l~~v~gv~~v~S~s~~g~s~i~v~f~~~~d~~~a~~~v~~~v~~~~~~LP~~~~~~~~~~~~~~~~v~~~~~~~ 146 (1051)
T TIGR00914 67 YPIETAMAGLPGLETTRSLSRYGLSQVTVIFKDGTDLYFARQLVNERLQQARDNLPEGVSPEMGPISTGLGEIFLYTVEA 146 (1051)
T ss_pred HHHHHHhcCCCCeeEEEEEccCceEEEEEEEeCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCCCcceeEEEEecc
Q ss_pred ---------------ccchhhHHHHHhhhcCCCCeeeEEee-eccCeEEEEeCCCC-----CCHHHHHHHHHhcCCceeE
Q 004259 137 ---------------MTCAACVNSVEGILRGLPGVKRAVVA-LATSLGEVEYDPTV-----ISKDDIANAIEDAGFEASF 195 (765)
Q Consensus 137 ---------------m~C~~C~~~Ie~~l~~~~GV~~~~vn-~~~~~~~v~~~~~~-----~~~~~i~~~i~~~Gy~~~~ 195 (765)
--..--...++..|+++|||.++.+. .....+.|..|+.. ++..++.++|+........
T Consensus 147 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~L~~i~GV~~V~~~G~~~~ei~V~iD~~kl~~~glt~~dV~~~l~~~~~~~~~ 226 (1051)
T TIGR00914 147 EEGARKKDGGAYTLTDLRTIQDWIIRPQLRTVPGVAEVNSIGGYVKQFLVAPDPEKLAAYGLSLADVVNALERNNQNVGA 226 (1051)
T ss_pred cccccccccCCCCHHHHHHHHHHHHHHHHhcCCCceEeeecCCceEEEEEEECHHHHHHcCCCHHHHHHHHHHhCccCCc
Q ss_pred eecCCcceeEEEEecccchhhhHHHHhhhcc--------CCCceEEEeecCCCeEEEEecCCC-----------CChhhH
Q 004259 196 VQSSGQDKILLQVTGVLCELDAHFLEGILSN--------FKGVRQFRFDKISGELEVLFDPEA-----------LSSRSL 256 (765)
Q Consensus 196 ~~~~~~~~~~~~i~gm~c~~ca~~ie~~l~~--------~~GV~~v~vn~~~~~~~V~ydp~~-----------i~~~~i 256 (765)
-.-+..++ ++.+.-..-..-.+.+++..-. +..|.+++..........++|... .+.-++
T Consensus 227 G~i~~~~~-~~~v~~~~~~~~~~~l~~i~I~~~~G~~v~L~dvA~V~~~~~~~~~~~~~ng~~av~l~v~~~~gan~~~v 305 (1051)
T TIGR00914 227 GYIERRGE-QYLVRAPGQVQSMDDIRNIVIATGEGVPIRIRDVARVQIGKELRTGAATENGKEVVLGTVFMLIGENSRTV 305 (1051)
T ss_pred eEEeeCCE-EEEEEecCccCCHHHHhccEEecCCCeEEEeeccEEEEEcCCccccceeeCCcceEEEEEEecCCCCHHHH
Q ss_pred HHhhhhcCCCcceeEecCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhccCCcchHHHHHH
Q 004259 257 VDGIAGRSNGKFQIRVMNPFARMTSRDSEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLNW 336 (765)
Q Consensus 257 ~~~i~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lllai~v~i~~m~l~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (765)
.+.+++.-+..-......-.-....+..+..+.....+...++.++.+.++.+++.+ -.+..-+..
T Consensus 306 ~~~V~~~l~~~~~~lP~g~~~~~~~d~s~~i~~~i~~l~~~l~~g~~lv~~vl~lfl--------------~~~r~~liv 371 (1051)
T TIGR00914 306 AQAVGDKLETINKTLPEGVEIVTTYDRSQLVDAAIATVKKNLLEGALLVIVILFLFL--------------GNIRAALIA 371 (1051)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhHHHHHHH
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHcCCCChhHHHHHHH
Q 004259 337 ALVSVVQFVIGKRFYTAAGRALRNGSTNMDVLVALGT 373 (765)
Q Consensus 337 ~l~~~v~~~~g~~~~~~a~~~l~~~~~~md~l~~l~~ 373 (765)
.++.|+.+.++.-++ .+..-.+|+-+|.++++
T Consensus 372 ~~~iP~s~~~~~~~m-----~~~g~sln~~sl~~l~i 403 (1051)
T TIGR00914 372 ATVIPLSLLITFIGM-----VFQGISANLMSLGALDF 403 (1051)
T ss_pred HHHHHHHHHHHHHHH-----HHhCCcHHHHHHHHHHH
No 71
>PRK13748 putative mercuric reductase; Provisional
Probab=72.54 E-value=12 Score=43.46 Aligned_cols=64 Identities=27% Similarity=0.516 Sum_probs=49.7
Q ss_pred EEEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcchhh
Q 004259 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (765)
Q Consensus 49 ~~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 113 (765)
.+.+.||+|++|..+++..+...+++....+++......+.+++ ......+...+++.||...+
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~-~~~~~~i~~~i~~~g~~~~~ 66 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEV-GTSPDALTAAVAGLGYRATL 66 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECC-CCCHHHHHHHHHHcCCeeec
Confidence 35689999999999999999999999888999888887776643 24455565566777876543
No 72
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=72.50 E-value=6.7 Score=37.35 Aligned_cols=50 Identities=32% Similarity=0.521 Sum_probs=41.4
Q ss_pred hhhHHHHHhhhcCCCCeeeEEeeeccC-------------------eEEEEeCCCCCCHHHHHHHHHhc
Q 004259 140 AACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAIEDA 189 (765)
Q Consensus 140 ~~C~~~Ie~~l~~~~GV~~~~vn~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~~ 189 (765)
.+|=|-+|+...++|||.++.+-.+.+ .+.|.|||..++.++|++..=+.
T Consensus 13 gGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~i 81 (174)
T COG0225 13 GGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEI 81 (174)
T ss_pred ccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHhee
Confidence 468888999999999999998877544 46899999999999999876443
No 73
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=72.28 E-value=12 Score=29.96 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=40.9
Q ss_pred EEEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcch
Q 004259 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEA 111 (765)
Q Consensus 49 ~~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~ 111 (765)
++.+.|+.|+...-.+.+++.+++. .....+..+++ ....++....+..||..
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~---------G~~l~v~~d~~-~~~~di~~~~~~~g~~~ 54 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPP---------GEVLEVLVDDP-AAVEDIPRWCEENGYEV 54 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGT---------T-EEEEEESST-THHHHHHHHHHHHTEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCC---------CCEEEEEECCc-cHHHHHHHHHHHCCCEE
Confidence 5788999999999999999999763 34555655554 45688999999999974
No 74
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=71.25 E-value=7 Score=37.60 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=38.0
Q ss_pred hhHHHHhhhccCCCceEEEeecCCC-------------------eEEEEecCCCCChhhHHHhhhh
Q 004259 216 DAHFLEGILSNFKGVRQFRFDKISG-------------------ELEVLFDPEALSSRSLVDGIAG 262 (765)
Q Consensus 216 ca~~ie~~l~~~~GV~~v~vn~~~~-------------------~~~V~ydp~~i~~~~i~~~i~~ 262 (765)
|=--+|..+..++||.++.+-.+++ .+.|.|||..++.++|++..=.
T Consensus 12 CFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~ 77 (172)
T PRK14054 12 CFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQ 77 (172)
T ss_pred ChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHH
Confidence 4455778889999999999866554 4899999999999999986543
No 75
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=71.07 E-value=39 Score=42.15 Aligned_cols=119 Identities=20% Similarity=0.287 Sum_probs=79.3
Q ss_pred HHHHHhhhcCCCCeeeEEeee--ccCeEEEEeCCCCCCHH----HHHHHHHhcC--CceeE-------eecCCcceeEEE
Q 004259 143 VNSVEGILRGLPGVKRAVVAL--ATSLGEVEYDPTVISKD----DIANAIEDAG--FEASF-------VQSSGQDKILLQ 207 (765)
Q Consensus 143 ~~~Ie~~l~~~~GV~~~~vn~--~~~~~~v~~~~~~~~~~----~i~~~i~~~G--y~~~~-------~~~~~~~~~~~~ 207 (765)
...||++++.++|+..++-.- ....++++|+.+ .+++ ++.+++.+.. .+... .+.++.--..+.
T Consensus 63 t~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~-~d~d~A~~~V~~kv~~~~~~LP~~~~~p~v~~~~~~~~~i~~~a 141 (1009)
T COG0841 63 TQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELG-TDPDTAAVQVQNKIQQAESRLPSGVQQPGVTVEKSSSNPLLILA 141 (1009)
T ss_pred hHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCC-CChHHHHHHHHHHHHHHHhcCCCccCCCceEeccCCCceEEEEE
Confidence 467999999999998766544 444556667665 3444 6667776543 22221 111122334455
Q ss_pred Eec--ccc----hhhhHHHHhhhccCCCceEEEeecC-CCeEEEEecCCC-----CChhhHHHhhhh
Q 004259 208 VTG--VLC----ELDAHFLEGILSNFKGVRQFRFDKI-SGELEVLFDPEA-----LSSRSLVDGIAG 262 (765)
Q Consensus 208 i~g--m~c----~~ca~~ie~~l~~~~GV~~v~vn~~-~~~~~V~ydp~~-----i~~~~i~~~i~~ 262 (765)
+.+ +.. ..-++.++..|...+||.++++.-. ...+.|..||.+ +++.++..+|+.
T Consensus 142 l~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV~~ai~~ 208 (1009)
T COG0841 142 LTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDVQSAIRA 208 (1009)
T ss_pred EEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHHHHHHHH
Confidence 554 321 1234679999999999999999887 678899999975 788999998875
No 76
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=69.65 E-value=9 Score=35.94 Aligned_cols=49 Identities=29% Similarity=0.477 Sum_probs=40.4
Q ss_pred hhhHHHHHhhhcCCCCeeeEEeeecc-------------------CeEEEEeCCCCCCHHHHHHHHHh
Q 004259 140 AACVNSVEGILRGLPGVKRAVVALAT-------------------SLGEVEYDPTVISKDDIANAIED 188 (765)
Q Consensus 140 ~~C~~~Ie~~l~~~~GV~~~~vn~~~-------------------~~~~v~~~~~~~~~~~i~~~i~~ 188 (765)
.+|=|-+|....+++||.++.+-++. +.+.|.|||..++.++|++..=+
T Consensus 7 gGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f~~ 74 (149)
T TIGR00401 7 GGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVFWE 74 (149)
T ss_pred cCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHHHH
Confidence 46889999999999999998876633 35678999999999999886633
No 77
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=68.10 E-value=40 Score=42.50 Aligned_cols=119 Identities=13% Similarity=0.220 Sum_probs=77.1
Q ss_pred HHHHHhhhcCCCCeeeEEeee---ccCeEEEEeCCCCCCHH----HHHHHHHhc--CCcee-----Ee--ecCCcceeEE
Q 004259 143 VNSVEGILRGLPGVKRAVVAL---ATSLGEVEYDPTVISKD----DIANAIEDA--GFEAS-----FV--QSSGQDKILL 206 (765)
Q Consensus 143 ~~~Ie~~l~~~~GV~~~~vn~---~~~~~~v~~~~~~~~~~----~i~~~i~~~--Gy~~~-----~~--~~~~~~~~~~ 206 (765)
...+|++|+.++||++++-.- ....+.++|+++. +.+ ++.+.++.+ .++.. +. ...+..-..+
T Consensus 62 t~plE~~l~~v~gv~~i~S~S~~~G~s~i~v~f~~g~-d~~~a~~~V~~~v~~~~~~LP~~v~~~~~~~~~~~~~~v~~~ 140 (1037)
T PRK10555 62 TQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGT-DPDEAVQQVQNQLQSAMRKLPQAVQNQGVTVRKTGDTNILTI 140 (1037)
T ss_pred hHHHHHHhcCCCCceEEEEEecCCCeEEEEEEEECCC-CHHHHHHHHHHHHHHHHHhCCCccccCCceEeCCCCCceEEE
Confidence 356899999999999988743 2245777887763 443 455555532 12211 11 1111223445
Q ss_pred EEec----ccch---h-hhHHHHhhhccCCCceEEEeecCCCeEEEEecCCC-----CChhhHHHhhhh
Q 004259 207 QVTG----VLCE---L-DAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRSLVDGIAG 262 (765)
Q Consensus 207 ~i~g----m~c~---~-ca~~ie~~l~~~~GV~~v~vn~~~~~~~V~ydp~~-----i~~~~i~~~i~~ 262 (765)
.+.+ +.-. . -++.++..|++.+||.+++++.....+.|+.||.+ ++..++...++.
T Consensus 141 ~~~~~~~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~~v~~al~~ 209 (1037)
T PRK10555 141 AFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDVTDAIES 209 (1037)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCCCHHHHHHHHHH
Confidence 5532 2211 1 24678899999999999999877777899999864 788888888874
No 78
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=67.47 E-value=9 Score=39.87 Aligned_cols=49 Identities=27% Similarity=0.398 Sum_probs=41.5
Q ss_pred chhhHHHHHhhhcCCCCeeeEEeeeccC-------------------eEEEEeCCCCCCHHHHHHHHH
Q 004259 139 CAACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAIE 187 (765)
Q Consensus 139 C~~C~~~Ie~~l~~~~GV~~~~vn~~~~-------------------~~~v~~~~~~~~~~~i~~~i~ 187 (765)
..+|=|-+|..+.+++||.++.+-++.+ .+.|.|||..++.++|++..=
T Consensus 133 agGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F~ 200 (283)
T PRK05550 133 AGGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVFF 200 (283)
T ss_pred ecCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHH
Confidence 3578999999999999999999877554 378999999999999988663
No 79
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=66.48 E-value=3.5e+02 Score=34.17 Aligned_cols=142 Identities=18% Similarity=0.233 Sum_probs=77.1
Q ss_pred EEEEEeCCCCChhhH----HHHHHhhhCCCCeeEEEEEeccCEE--EEEECCCCCCH----HHHHHHhHhc--Ccchhhh
Q 004259 47 RIQVGVTGMTCAACS----NSVEGALMGLKGVAKASVALLQNKA--DVVFDPDLVKD----EDIKNAIEDA--GFEAEIL 114 (765)
Q Consensus 47 ~~~~~i~gm~C~~C~----~~Ie~~l~~~~Gv~~~~v~~~~~~~--~v~~~~~~~~~----~~i~~~i~~~--Gy~~~~~ 114 (765)
.+...-+|-+=...+ ..+|++++.++|+.+++.....+.. .+.++.. .+. .++.+.+.+. .++....
T Consensus 46 ~V~~~~pGas~~~ve~~vt~piE~~l~~i~gv~~i~S~s~~G~s~i~l~f~~~-~d~~~a~~~v~~~v~~~~~~LP~~~~ 124 (1025)
T PRK10614 46 MVSASLPGASPETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILQFDFD-RDINGAARDVQAAINAAQSLLPSGMP 124 (1025)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECC-CChHHHHHHHHHHHHHHHhhCCCccC
Confidence 455555666544444 7789999999999998765444444 4445443 232 3444444432 1110000
Q ss_pred cccCCCCCCCCcceeceeeccc--ccchh----hHHHHHhhhcCCCCeeeEEeeec-cCeEEEEeCCCC-----CCHHHH
Q 004259 115 AESSTSGPKPQGTIVGQYTIGG--MTCAA----CVNSVEGILRGLPGVKRAVVALA-TSLGEVEYDPTV-----ISKDDI 182 (765)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~i~g--m~C~~----C~~~Ie~~l~~~~GV~~~~vn~~-~~~~~v~~~~~~-----~~~~~i 182 (765)
..+.....+........+.+.+ ++-.. -.+.++..|+++|||.++++.-. ...+.|.+||.. ++.+++
T Consensus 125 ~~p~~~~~~~~~~pv~~~~~~~~~~~~~~L~~~~~~~l~~~L~~i~GV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~dV 204 (1025)
T PRK10614 125 SRPTYRKANPSDAPIMILTLTSDTYSQGQLYDFASTQLAQTISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDDV 204 (1025)
T ss_pred CCCEEEecCCCccceeEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecCCCceEEEEEeCHHHHHHcCCCHHHH
Confidence 0000000000010112223322 11111 13579999999999999988632 356888888853 578889
Q ss_pred HHHHHhc
Q 004259 183 ANAIEDA 189 (765)
Q Consensus 183 ~~~i~~~ 189 (765)
.++++..
T Consensus 205 ~~al~~~ 211 (1025)
T PRK10614 205 RQAISNA 211 (1025)
T ss_pred HHHHHHh
Confidence 8888764
No 80
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=66.38 E-value=8 Score=38.68 Aligned_cols=108 Identities=14% Similarity=0.178 Sum_probs=62.2
Q ss_pred CCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCceeEeecCCcceeEEEEecccc----------hhhhHHHHhh
Q 004259 154 PGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSGQDKILLQVTGVLC----------ELDAHFLEGI 223 (765)
Q Consensus 154 ~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~i~gm~c----------~~ca~~ie~~ 223 (765)
.||..-+....++...+..++. +..+-++.++..||+-....+- .--|.-+|+-. -.-++++|..
T Consensus 43 ~gI~A~K~~~~~g~~~l~Ve~~--~fa~Av~iL~~~GlPr~~f~~l---~d~Fp~dgLVsSP~eEkaR~~~~~eQ~le~t 117 (246)
T COG4669 43 HGINAEKKADKDGGTSLLVEES--DFAEAVEILNQNGLPRKKFTTL---GDIFPKDGLVSSPTEEKARLNYAKEQQLEQT 117 (246)
T ss_pred cCCcceeeccCCCceEEEEcHH--HHHHHHHHHHhcCCCCCCCCcH---HHhCCcccccCCcHHHHHHHHHHHHHHHHHH
Confidence 5676666777777777764432 2233455667889976542210 00011122211 1235789999
Q ss_pred hccCCCceEEEeecC--------------CCeEEEEecCCC---CChhhHHHhhhhcCCC
Q 004259 224 LSNFKGVRQFRFDKI--------------SGELEVLFDPEA---LSSRSLVDGIAGRSNG 266 (765)
Q Consensus 224 l~~~~GV~~v~vn~~--------------~~~~~V~ydp~~---i~~~~i~~~i~~~g~~ 266 (765)
|+.++||.+++|+.. +.++.+.|.|+. +-..+|...+++.-+|
T Consensus 118 Ls~mDGVi~ArV~I~lp~~~~~g~~~~P~saSVfIky~~~~nl~~~v~~IK~LV~nSv~g 177 (246)
T COG4669 118 LSKMDGVISARVHISLPEDDDEGKNALPSSASVFIKYSPDVNLSIYVSQIKRLVANSVPG 177 (246)
T ss_pred HHhcCceEEEEEEEEcCCCCccCCCCCCceeEEEEEecCCCChhHhHHHHHHHHHhccCC
Confidence 999999998876433 247789998874 3334455555554433
No 81
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=65.94 E-value=11 Score=37.63 Aligned_cols=98 Identities=12% Similarity=0.167 Sum_probs=52.1
Q ss_pred CCChhhHHHHHHhhhC-----------CCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcchhh-------hcc
Q 004259 55 MTCAACSNSVEGALMG-----------LKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI-------LAE 116 (765)
Q Consensus 55 m~C~~C~~~Ie~~l~~-----------~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~-------~~~ 116 (765)
+.|++|-.-+-+.|.. ..||.-....-.++...+..+. .+..+..+.+...||+-.. .+.
T Consensus 15 l~L~gCk~~Ly~gL~e~eANemlAlL~~~gI~A~K~~~~~g~~~l~Ve~--~~fa~Av~iL~~~GlPr~~f~~l~d~Fp~ 92 (246)
T COG4669 15 LLLTGCKVDLYTGLSEKEANEMLALLMSHGINAEKKADKDGGTSLLVEE--SDFAEAVEILNQNGLPRKKFTTLGDIFPK 92 (246)
T ss_pred HHHhcchHHHHcCCCHhHHHHHHHHHHHcCCcceeeccCCCceEEEEcH--HHHHHHHHHHHhcCCCCCCCCcHHHhCCc
Confidence 3577777444443332 3455545554444555444332 2334445556777885321 122
Q ss_pred cCCCCCCCCcceeceeecccccchhhHHHHHhhhcCCCCeeeEEee
Q 004259 117 SSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVA 162 (765)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn 162 (765)
+...+.+..+..+..+.+ ...+|+.|++++||.+++|.
T Consensus 93 dgLVsSP~eEkaR~~~~~--------eQ~le~tLs~mDGVi~ArV~ 130 (246)
T COG4669 93 DGLVSSPTEEKARLNYAK--------EQQLEQTLSKMDGVISARVH 130 (246)
T ss_pred ccccCCcHHHHHHHHHHH--------HHHHHHHHHhcCceEEEEEE
Confidence 222222222223333333 57899999999999988875
No 82
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=63.81 E-value=9.9 Score=31.16 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=31.6
Q ss_pred HHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCcee
Q 004259 143 VNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEAS 194 (765)
Q Consensus 143 ~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 194 (765)
+..++-.|.+.++|-.+-+|--.+...|.+|+...+.+++++.+++.++.+.
T Consensus 13 A~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~kpEVi 64 (88)
T PF11491_consen 13 AMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFKPEVI 64 (88)
T ss_dssp THHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTTT-SS
T ss_pred HHHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcChhhe
Confidence 5567778999999999999999999999999999999999999999887763
No 83
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=63.52 E-value=18 Score=29.70 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=34.2
Q ss_pred cccchhhhHHHHhhhccCCCceEEEeecCCCeEEEEecCCCCChhhHHHhhhhcCCC
Q 004259 210 GVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNG 266 (765)
Q Consensus 210 gm~c~~ca~~ie~~l~~~~GV~~v~vn~~~~~~~V~ydp~~i~~~~i~~~i~~~g~~ 266 (765)
|--....|..++..|+..++|..+=+|.-.....|.||+..++.+++++.++...+.
T Consensus 6 g~It~eeA~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~kpE 62 (88)
T PF11491_consen 6 GNITPEEAMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFKPE 62 (88)
T ss_dssp -S-TTTTTHHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTTT-
T ss_pred CCCCHHHHHHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcChh
Confidence 334556788899999999999999999999999999999999999999999987633
No 84
>PRK11018 hypothetical protein; Provisional
Probab=62.51 E-value=55 Score=26.88 Aligned_cols=68 Identities=18% Similarity=0.123 Sum_probs=47.4
Q ss_pred ceeecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCceeEeecCCcceeEEEE
Q 004259 130 GQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSGQDKILLQV 208 (765)
Q Consensus 130 ~~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~i 208 (765)
..+.+.|..|+.-.-+..++|++++.- ..+.|..|.. .+.++|-...++.||.+..... ..+.+++.|
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~G---------~~L~V~~d~~-~a~~di~~~~~~~G~~v~~~~~-~~g~~~~~I 76 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLKKG---------EILEVVSDCP-QSINNIPLDARNHGYTVLDIQQ-DGPTIRYLI 76 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCCCC---------CEEEEEeCCc-cHHHHHHHHHHHcCCEEEEEEe-cCCeEEEEE
Confidence 468888999999999999999988632 2333444432 4578899999999999864333 234455544
No 85
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=61.48 E-value=16 Score=34.46 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=37.2
Q ss_pred hhHHHHhhhccCCCceEEEeecCC--------------CeEEEEecCCCCChhhHHHhhhh
Q 004259 216 DAHFLEGILSNFKGVRQFRFDKIS--------------GELEVLFDPEALSSRSLVDGIAG 262 (765)
Q Consensus 216 ca~~ie~~l~~~~GV~~v~vn~~~--------------~~~~V~ydp~~i~~~~i~~~i~~ 262 (765)
|=--+|..+..++||.++++-.++ +.+.|.|||..++.++|++..=.
T Consensus 10 CFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~ 70 (156)
T PRK05528 10 CLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFE 70 (156)
T ss_pred CchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHH
Confidence 444467888899999999975544 35789999999999999987544
No 86
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=61.31 E-value=2.2e+02 Score=30.08 Aligned_cols=76 Identities=17% Similarity=0.295 Sum_probs=44.9
Q ss_pred hhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCH-HHHHHHHHhcCCceeEee-cCC--cceeEEEEecccchh
Q 004259 140 AACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISK-DDIANAIEDAGFEASFVQ-SSG--QDKILLQVTGVLCEL 215 (765)
Q Consensus 140 ~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~-~~i~~~i~~~Gy~~~~~~-~~~--~~~~~~~i~gm~c~~ 215 (765)
..|...+++.+++.|||.+++.- +. +.+.+..+..|+. .... +++ +....++++. +.
T Consensus 71 ~~~~~~v~~~i~~~~gV~~v~~~---------------sre~~l~~L~~~lg~~-~~~~l~~nPLP~~~vV~~~~---p~ 131 (297)
T COG2177 71 QDDAALVREKIEGIPGVKSVRFI---------------SREEALKELQPWLGFG-ALLMLDENPLPDVFVVTPDD---PP 131 (297)
T ss_pred hHHHHHHHHHHhcCCCcceEEEe---------------CHHHHHHHHHHHcCch-hhhcCCCCCCCceEEEEeCC---Cc
Confidence 88999999999999999986642 23 3344444568876 2211 111 2333444332 33
Q ss_pred hhHHHHhhhccCCCceEEE
Q 004259 216 DAHFLEGILSNFKGVRQFR 234 (765)
Q Consensus 216 ca~~ie~~l~~~~GV~~v~ 234 (765)
....+.+.++.++||.+|+
T Consensus 132 ~~~~i~~~l~~l~gV~~V~ 150 (297)
T COG2177 132 QVKAIAAALRDLPGVAEVD 150 (297)
T ss_pred cHHHHHHHHHcCccceehh
Confidence 4455666666666665553
No 87
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=60.35 E-value=75 Score=40.12 Aligned_cols=119 Identities=14% Similarity=0.183 Sum_probs=76.8
Q ss_pred HHHHHhhhcCCCCeeeEEeee---ccCeEEEEeCCCCCCHH----HHHHHHHhc--CCcee-----E--eecCCcceeEE
Q 004259 143 VNSVEGILRGLPGVKRAVVAL---ATSLGEVEYDPTVISKD----DIANAIEDA--GFEAS-----F--VQSSGQDKILL 206 (765)
Q Consensus 143 ~~~Ie~~l~~~~GV~~~~vn~---~~~~~~v~~~~~~~~~~----~i~~~i~~~--Gy~~~-----~--~~~~~~~~~~~ 206 (765)
...||+.|..++|+++++-.- ....+.++|+.+ .+.+ ++.+.++.. .++.. + .......-..+
T Consensus 62 t~piE~~l~~v~gi~~i~S~S~~~G~s~I~v~f~~g-~d~~~a~~~V~~~i~~~~~~LP~~~~~~~~~~~~~~~~~v~~~ 140 (1049)
T PRK15127 62 TQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESG-TDADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVV 140 (1049)
T ss_pred hHHHHHHhcCCCCceEEEEEecCCceEEEEEEEECC-CChHHHHHHHHHHHHHHHhhCCCcccCCCcEEecCCCCceEEE
Confidence 356899999999999988654 234577788775 3443 556666543 23311 1 11111112334
Q ss_pred EEec----ccch---h-hhHHHHhhhccCCCceEEEeecCCCeEEEEecCCC-----CChhhHHHhhhh
Q 004259 207 QVTG----VLCE---L-DAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRSLVDGIAG 262 (765)
Q Consensus 207 ~i~g----m~c~---~-ca~~ie~~l~~~~GV~~v~vn~~~~~~~V~ydp~~-----i~~~~i~~~i~~ 262 (765)
.+.+ +.-. . -...++..|++.+||.++++......+.|..||.+ ++..++...++.
T Consensus 141 ~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vDp~kl~~~gls~~~V~~~l~~ 209 (1049)
T PRK15127 141 GVINTDGTMTQEDISDYVAANMKDPISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVINAIKA 209 (1049)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceEEEEEeCHHHHHHcCCCHHHHHHHHHH
Confidence 4433 1111 1 12468899999999999999877777999999864 788888888873
No 88
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=59.76 E-value=13 Score=36.29 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=37.1
Q ss_pred hhHHHHhhhccCCCceEEEeecCCC-------------------eEEEEecCCCCChhhHHHhhhh
Q 004259 216 DAHFLEGILSNFKGVRQFRFDKISG-------------------ELEVLFDPEALSSRSLVDGIAG 262 (765)
Q Consensus 216 ca~~ie~~l~~~~GV~~v~vn~~~~-------------------~~~V~ydp~~i~~~~i~~~i~~ 262 (765)
|=--+|..+..++||.++++-.+++ .+.|.|||..++.++|++..=.
T Consensus 17 CFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff~ 82 (186)
T PRK13014 17 CFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFFS 82 (186)
T ss_pred CceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHHH
Confidence 3334677888999999999866554 4789999999999999986543
No 89
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=58.94 E-value=18 Score=33.90 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=36.7
Q ss_pred hhHHHHhhhccCCCceEEEeecCC-------------------CeEEEEecCCCCChhhHHHhhhh
Q 004259 216 DAHFLEGILSNFKGVRQFRFDKIS-------------------GELEVLFDPEALSSRSLVDGIAG 262 (765)
Q Consensus 216 ca~~ie~~l~~~~GV~~v~vn~~~-------------------~~~~V~ydp~~i~~~~i~~~i~~ 262 (765)
|=--+|..+..++||.++++-.++ +.+.|.|||..++.++|++..=.
T Consensus 9 CFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f~~ 74 (149)
T TIGR00401 9 CFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVFWE 74 (149)
T ss_pred CchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHHHH
Confidence 444467788889999999875443 46789999999999999986544
No 90
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=58.86 E-value=3.6e+02 Score=34.14 Aligned_cols=131 Identities=12% Similarity=0.045 Sum_probs=72.0
Q ss_pred hhHHHHHHhhhCCCCeeEEEEEec-----cCEEEEEECCCC---CCHHHHHHHhHhc-C-cc-hhhhc-ccCCCC-CCCC
Q 004259 59 ACSNSVEGALMGLKGVAKASVALL-----QNKADVVFDPDL---VKDEDIKNAIEDA-G-FE-AEILA-ESSTSG-PKPQ 125 (765)
Q Consensus 59 ~C~~~Ie~~l~~~~Gv~~~~v~~~-----~~~~~v~~~~~~---~~~~~i~~~i~~~-G-y~-~~~~~-~~~~~~-~~~~ 125 (765)
.-..++++.+++.++|.++..... .++..+...+.. .+.+++.+.+.+. . +. +.... ...... ....
T Consensus 577 ~~~~~~~~~l~~~~~V~~v~~~~g~~~~~~~~~~v~l~~~~~r~~~~~~i~~~lr~~l~~~pg~~~~~~~~~~~~~~g~~ 656 (1025)
T PRK10614 577 GKLQDFMKIIRDDPAVDNVTGFTGGSRVNSGMMFITLKPLSERSETAQQVIDRLRVKLAKEPGANLFLMAVQDIRVGGRQ 656 (1025)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEecCCCCceeEEEEEecchhhccCcHHHHHHHHHHHHhcCCCcEEEecCCcccCcCCCC
Confidence 345667777787888887665432 233445443321 1344555544331 1 11 11100 000000 0000
Q ss_pred cceeceeecccccchh---hHHHHHhhhcCCCCeeeEEeeeccC--eEEEEeCCC-----CCCHHHHHHHHHhc
Q 004259 126 GTIVGQYTIGGMTCAA---CVNSVEGILRGLPGVKRAVVALATS--LGEVEYDPT-----VISKDDIANAIEDA 189 (765)
Q Consensus 126 ~~~~~~~~i~gm~C~~---C~~~Ie~~l~~~~GV~~~~vn~~~~--~~~v~~~~~-----~~~~~~i~~~i~~~ 189 (765)
....+.+++.|-+=.. -+..+++.|++.||+.+++.+...+ ...++.|+. .+++.++.+.++..
T Consensus 657 ~~~~i~i~l~G~d~~~L~~~a~~i~~~L~~~pgv~~v~~~~~~~~~el~i~id~~ka~~~Gls~~~v~~~l~~~ 730 (1025)
T PRK10614 657 SNASYQYTLLSDDLAALREWEPKIRKALAALPELADVNSDQQDKGAEMALTYDRDTMARLGIDVQAANSLLNNA 730 (1025)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCceEEEEECHHHHHHcCCCHHHHHHHHHHH
Confidence 1123566666654332 3678999999999999999876555 667776663 36788888888764
No 91
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=57.97 E-value=14 Score=36.64 Aligned_cols=47 Identities=17% Similarity=0.163 Sum_probs=38.0
Q ss_pred hhHHHHhhhccCCCceEEEeecCC-------------------CeEEEEecCCCCChhhHHHhhhh
Q 004259 216 DAHFLEGILSNFKGVRQFRFDKIS-------------------GELEVLFDPEALSSRSLVDGIAG 262 (765)
Q Consensus 216 ca~~ie~~l~~~~GV~~v~vn~~~-------------------~~~~V~ydp~~i~~~~i~~~i~~ 262 (765)
|=--+|..+..++||.++++-.++ +.+.|.|||..++.++|++..=.
T Consensus 54 CFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff~ 119 (213)
T PRK00058 54 CFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFWE 119 (213)
T ss_pred CcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHH
Confidence 444567788999999999987663 35889999999999999987644
No 92
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.76 E-value=52 Score=27.66 Aligned_cols=67 Identities=16% Similarity=0.103 Sum_probs=45.1
Q ss_pred eceeecccccchhhHHHHHhhhcCCCCeeeEEe-----eeccCeEEEEeCCCCCCHHHHHHHHHhcCCceeE
Q 004259 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVV-----ALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195 (765)
Q Consensus 129 ~~~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~v-----n~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 195 (765)
++.+.+-..+-.--.--+.+.|.+++||+.+++ +..+..+.++.....++.++|.+.|++.|-..+-
T Consensus 7 RlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHS 78 (97)
T COG1888 7 RLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHS 78 (97)
T ss_pred eeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeee
Confidence 334443333322233456677888888877664 4456666777766778999999999999987664
No 93
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=57.26 E-value=5e+02 Score=32.83 Aligned_cols=132 Identities=19% Similarity=0.219 Sum_probs=77.5
Q ss_pred hhhHHHHHHhhhCCCCeeEEEEEec-----------cCEEEEEECCCC------CCHHHHHHHhHhc-----Ccchhhhc
Q 004259 58 AACSNSVEGALMGLKGVAKASVALL-----------QNKADVVFDPDL------VKDEDIKNAIEDA-----GFEAEILA 115 (765)
Q Consensus 58 ~~C~~~Ie~~l~~~~Gv~~~~v~~~-----------~~~~~v~~~~~~------~~~~~i~~~i~~~-----Gy~~~~~~ 115 (765)
...++++|+.+++.|+|.++..... .....+...+.. .+..++.+.+++. |-......
T Consensus 577 ~~~~~~ve~~L~~~p~V~~v~s~vG~~~~~~~~~~~~~~~~i~L~~~~~r~~~~~~~~~l~~~lr~~l~~~~~~~~~~~~ 656 (1021)
T PF00873_consen 577 DAIVKQVEDILKEDPEVKSVSSRVGRGFSGFNAGPNSASIFINLKPKSERPGSKESIDELIDELRQKLKQLPGARVFVFS 656 (1021)
T ss_dssp HHHHHHHHHHHHTTTTEEEEEEEESECSST--ECTTEEEEEEEE--CTCS-SCCCSHHHHHHHHHHHCCTSTSSEEEEEE
T ss_pred HHHHHHHHHHHHhhhhhhccceEeccccccccCCCcceEEEEEEeecccccccchhHHHHHHHHHHhhhhCCCcceeccc
Confidence 4688999999999999998877543 223444443321 2445555555432 11111111
Q ss_pred ccCCCC--CCCCcceeceeecccccchh---hHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCC-------CCCHHHHH
Q 004259 116 ESSTSG--PKPQGTIVGQYTIGGMTCAA---CVNSVEGILRGLPGVKRAVVALATSLGEVEYDPT-------VISKDDIA 183 (765)
Q Consensus 116 ~~~~~~--~~~~~~~~~~~~i~gm~C~~---C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~-------~~~~~~i~ 183 (765)
...... ...+....+.+.+.|-+=.. =+.++++.+++.||+.+++.+...++-.+..+++ .++.+++.
T Consensus 657 ~~~~~~~~~~~g~~~~i~v~i~G~d~~~L~~~a~~v~~~l~~~pgv~dv~~~~~~~~~el~i~~dreka~~~Gls~~~va 736 (1021)
T PF00873_consen 657 PPDLRGLGSGPGSSAPIQVEIYGDDLEELRKAAEKVKAKLAEIPGVTDVRDDWEDGQPELRIDPDREKAARLGLSPADVA 736 (1021)
T ss_dssp HCSSCCCCSSSSEEEEEEEECSSSCHHHHHHHHHHHHHHHHHSTTEEEEEESSSSBEEEEEEEE-HHHHHHTTB-HHHHH
T ss_pred cccccccccccccceeeeeccCCCCHHHHHHHHHHHHHHHHhCCCcccccccccccCcceEEEecHHHHHHcCCCHHHHH
Confidence 111110 11122234566677765444 4788999999999999999998887776665443 25677888
Q ss_pred HHHHhc
Q 004259 184 NAIEDA 189 (765)
Q Consensus 184 ~~i~~~ 189 (765)
+.++.+
T Consensus 737 ~~l~~a 742 (1021)
T PF00873_consen 737 RTLRTA 742 (1021)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 94
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=55.25 E-value=20 Score=34.21 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=38.6
Q ss_pred cccchhhhHHHHhhhccCCCceEEEeecCC-------------------CeEEEEecCCCCChhhHHHhhhh
Q 004259 210 GVLCELDAHFLEGILSNFKGVRQFRFDKIS-------------------GELEVLFDPEALSSRSLVDGIAG 262 (765)
Q Consensus 210 gm~c~~ca~~ie~~l~~~~GV~~v~vn~~~-------------------~~~~V~ydp~~i~~~~i~~~i~~ 262 (765)
++-|=.| +|+.+...+||.++.+-.++ +.+.|.|||..++.++|++..=+
T Consensus 12 agGCFWg---~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~ 80 (174)
T COG0225 12 AGGCFWG---VEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFE 80 (174)
T ss_pred eccCccc---hHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHhe
Confidence 3444444 67888899999999975544 36789999999999999987543
No 95
>PF10173 Mit_KHE1: Mitochondrial K+-H+ exchange-related; InterPro: IPR018786 This entry represents a family of proteins conserved from plants to humans. Their function is not known.
Probab=53.76 E-value=31 Score=33.72 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=18.4
Q ss_pred eEEEEecCCCCChhhHHHhhhhcC
Q 004259 241 ELEVLFDPEALSSRSLVDGIAGRS 264 (765)
Q Consensus 241 ~~~V~ydp~~i~~~~i~~~i~~~g 264 (765)
.+.|-|.+..++.+++.+.++...
T Consensus 104 ~i~v~yP~~~~~~~~v~~~L~~l~ 127 (187)
T PF10173_consen 104 PIEVYYPGSVISPREVLRQLRKLA 127 (187)
T ss_pred ceeEecCcccCCHHHHHHHHHHHH
Confidence 677777768888888888887643
No 96
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=53.62 E-value=1.1e+02 Score=38.74 Aligned_cols=119 Identities=13% Similarity=0.193 Sum_probs=75.1
Q ss_pred HHHHHhhhcCCCCeeeEEeee---ccCeEEEEeCCCCCCH----HHHHHHHHhc--CCcee-------EeecCCcceeEE
Q 004259 143 VNSVEGILRGLPGVKRAVVAL---ATSLGEVEYDPTVISK----DDIANAIEDA--GFEAS-------FVQSSGQDKILL 206 (765)
Q Consensus 143 ~~~Ie~~l~~~~GV~~~~vn~---~~~~~~v~~~~~~~~~----~~i~~~i~~~--Gy~~~-------~~~~~~~~~~~~ 206 (765)
...+|++++.++||++++... ....+.++++++. +. .++.+.+... .++.. ........-..+
T Consensus 62 t~plE~~l~~v~gv~~i~S~s~~~g~s~i~v~f~~~~-d~~~a~~~v~~~l~~~~~~LP~~~~~~~~~~~~~~~~~~~~i 140 (1044)
T TIGR00915 62 TQVIEQQMNGIDGLRYMSSESDSDGSMTITLTFEQGT-DPDIAQVQVQNKLQLATPLLPQEVQRQGVRVEKASSNFLMVI 140 (1044)
T ss_pred HHHHHHHhcCCCCceEEEEEEcCCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHhhCCCcccCCCcEEeCCCCCceEEE
Confidence 356788899999999877543 2345667776653 32 3455666542 23211 111111112334
Q ss_pred EEecc----cchh----hhHHHHhhhccCCCceEEEeecCCCeEEEEecCCC-----CChhhHHHhhhh
Q 004259 207 QVTGV----LCEL----DAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRSLVDGIAG 262 (765)
Q Consensus 207 ~i~gm----~c~~----ca~~ie~~l~~~~GV~~v~vn~~~~~~~V~ydp~~-----i~~~~i~~~i~~ 262 (765)
.+.+- +-.. -++.++..|.+.+||.++++......+.|+.||.+ ++..++...|+.
T Consensus 141 ~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~dV~~~i~~ 209 (1044)
T TIGR00915 141 GLVSTDGSMTKEDLSDYIASNMVDPISRLEGVGDVQLFGSQYAMRIWLDPAKLNSYQLTPADVISAIQA 209 (1044)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEecCCceEEEEEECHHHHHHcCCCHHHHHHHHHH
Confidence 44331 2111 12568899999999999999888777999999864 888888888875
No 97
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=53.25 E-value=85 Score=24.66 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=41.6
Q ss_pred eecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCceeEeecCCcceeEEEE
Q 004259 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSGQDKILLQV 208 (765)
Q Consensus 132 ~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~i 208 (765)
+.+.|+.|+.-.-...+++ +++.-. .+.|..|. ..+.++|....++.||.....+.+ +.+++.|
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~g~---------~l~v~~d~-~~s~~~i~~~~~~~G~~~~~~~~~--~~~~i~I 65 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEAGG---------EIEVLVDN-EVAKENVSRFAESRGYEVSVEEKG--GEFEITI 65 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCCCC---------EEEEEEcC-hhHHHHHHHHHHHcCCEEEEEecC--CEEEEEE
Confidence 4567999999999999999 554222 23333332 245688999999999999543332 2455544
No 98
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=52.88 E-value=1.2e+02 Score=37.65 Aligned_cols=188 Identities=13% Similarity=0.118 Sum_probs=96.2
Q ss_pred HHHHHHHHhchHHHHHHHHHhcCCCeEE----------EEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccCccEEEE
Q 004259 411 GKYLEILAKGKTSDAIKKLVELAPATAL----------LVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVV 480 (765)
Q Consensus 411 ~~~le~~~~~k~~~~l~~l~~~~~~~~~----------v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl 480 (765)
-.+++.+...++.+.++++........+ ....-++=.......+...+..|-|.++++. +-+-+|=-.+
T Consensus 127 i~~~qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~IPaDg~li~g-~~l~VDES~L 205 (903)
T PRK15122 127 LRFWQEFRSNKAAEALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIES-RDLFISQAVL 205 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccCCceEEEECCccCCCCeEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEc-CceEEEcccc
Confidence 3445555566777788887654332221 1111111000135667778888888887763 3344555555
Q ss_pred eccce-eecccc------------CCCccee-----ccCCCCceeeeeeeecceEEEEEE----------EeCCcchHHH
Q 004259 481 WGTSY-VNESMV------------TGEAVPV-----LKEINSPVIGGTINLHGVLHIQAT----------KVGSDAVLSQ 532 (765)
Q Consensus 481 ~g~~~-Vdes~L------------TGEs~pv-----~k~~g~~v~aGt~~~~g~~~~~v~----------~~g~~t~~~~ 532 (765)
.|++. |+-... .++..+. ..-.|..|..|+...-=...+.=+ ..-..|.+.+
T Consensus 206 TGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T~~gkI~~~v~~~~~~t~l~~ 285 (903)
T PRK15122 206 TGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRTYFGSLAKSIVGTRAQTAFDR 285 (903)
T ss_pred CCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEeccccHhhHHHHHhcCCCCCCcHHH
Confidence 56665 333321 1222111 235688888887443211111111 1112222221
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccch
Q 004259 533 IISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCA 612 (765)
Q Consensus 533 i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~a 612 (765)
- -.++.+...+++.++++++++++.+...-|.- .+..++..+++..--+.|.+
T Consensus 286 ~----------l~~i~~~l~~~~~~~~~~v~~~~~~~~~~~~~-----------------~l~~aisl~V~~~Pe~Lp~~ 338 (903)
T PRK15122 286 G----------VNSVSWLLIRFMLVMVPVVLLINGFTKGDWLE-----------------ALLFALAVAVGLTPEMLPMI 338 (903)
T ss_pred H----------HHHHHHHHHHHHHHHHHHhhhhhhhccCCHHH-----------------HHHHHHHHHHHHccchHHHH
Confidence 1 13456777888888888887776543321211 23344555666666677777
Q ss_pred hhhhHHHHHHHHHH
Q 004259 613 LGLATPTAVMVATG 626 (765)
Q Consensus 613 l~la~p~~~~~~~~ 626 (765)
+.+++-.+.....+
T Consensus 339 vt~~La~g~~~mak 352 (903)
T PRK15122 339 VSSNLAKGAIAMAR 352 (903)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766544433
No 99
>PRK11018 hypothetical protein; Provisional
Probab=52.16 E-value=51 Score=27.10 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=42.7
Q ss_pred EEEEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcchh
Q 004259 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (765)
Q Consensus 48 ~~~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 112 (765)
.++.+.|..|+.-.-+..+++++++. .....+..+++ .+...+....+..||...
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~---------G~~L~V~~d~~-~a~~di~~~~~~~G~~v~ 63 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLKK---------GEILEVVSDCP-QSINNIPLDARNHGYTVL 63 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCCC---------CCEEEEEeCCc-cHHHHHHHHHHHcCCEEE
Confidence 57899999999999999999998863 33445555544 456788888899999863
No 100
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=52.16 E-value=28 Score=32.97 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=37.8
Q ss_pred hhHHHHhhhccCCCceEEEeecCC-------------------CeEEEEecCCCCChhhHHHhhhhc
Q 004259 216 DAHFLEGILSNFKGVRQFRFDKIS-------------------GELEVLFDPEALSSRSLVDGIAGR 263 (765)
Q Consensus 216 ca~~ie~~l~~~~GV~~v~vn~~~-------------------~~~~V~ydp~~i~~~~i~~~i~~~ 263 (765)
|=--.|..+..++||.++++-..+ +.+.|.|||..++.++|++..=..
T Consensus 9 CFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~~ 75 (155)
T PF01625_consen 9 CFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFRI 75 (155)
T ss_dssp SHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHHH
T ss_pred CCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHHh
Confidence 445577889999999999986544 367899999999999999876544
No 101
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=51.04 E-value=1e+02 Score=24.58 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=44.7
Q ss_pred eecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCceeEeecCCcceeEEEE
Q 004259 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSGQDKILLQV 208 (765)
Q Consensus 132 ~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~i 208 (765)
+...|..|+.=.-+..++|++++.- +.+.|..|.. .+.++|....++.||.+...... .+.+++.|
T Consensus 2 lD~rG~~CP~Pvi~~kkal~~l~~G---------~~l~V~~d~~-~s~~ni~~~~~~~g~~v~~~~~~-~~~~~~~i 67 (69)
T cd03422 2 LDLRGEPCPYPAIATLEALPSLKPG---------EILEVISDCP-QSINNIPIDARNHGYKVLAIEQS-GPTIRYLI 67 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCCC---------CEEEEEecCc-hHHHHHHHHHHHcCCEEEEEEec-CCEEEEEE
Confidence 3456899999999999999988632 2334444432 56788999999999998654332 24444443
No 102
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=50.21 E-value=1.2e+02 Score=24.17 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=44.4
Q ss_pred eecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCceeEeecCCcceeEEEE
Q 004259 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSGQDKILLQV 208 (765)
Q Consensus 132 ~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~i 208 (765)
+...|..|+.=.-...++|++++- .+.+.|..|.. .+.+++.+..++.||++..... +.+.+++.|
T Consensus 2 lD~~G~~CP~P~i~~k~~l~~l~~---------G~~l~V~~dd~-~s~~di~~~~~~~g~~~~~~~~-~~~~~~~~I 67 (69)
T cd03423 2 LDTRGLRCPEPVMMLHKKVRKMKP---------GDTLLVLATDP-STTRDIPKFCTFLGHELLAQET-EDEPYRYLI 67 (69)
T ss_pred ccccCCcCCHHHHHHHHHHHcCCC---------CCEEEEEeCCC-chHHHHHHHHHHcCCEEEEEEE-cCCEEEEEE
Confidence 345688999988889999988752 22334444432 4678999999999999865443 234444443
No 103
>PRK09577 multidrug efflux protein; Reviewed
Probab=50.12 E-value=1.3e+02 Score=37.94 Aligned_cols=120 Identities=12% Similarity=0.201 Sum_probs=74.1
Q ss_pred HHHHHhhhcCCCCeeeEEeeeccC--eEEEEeCCCCCCH----HHHHHHHHhc--CCcee-------EeecCCcceeEEE
Q 004259 143 VNSVEGILRGLPGVKRAVVALATS--LGEVEYDPTVISK----DDIANAIEDA--GFEAS-------FVQSSGQDKILLQ 207 (765)
Q Consensus 143 ~~~Ie~~l~~~~GV~~~~vn~~~~--~~~v~~~~~~~~~----~~i~~~i~~~--Gy~~~-------~~~~~~~~~~~~~ 207 (765)
...+|+.|+.++|+++++-.-..+ .+.++|+.+. +. .++.+++++. .++.. ...........+.
T Consensus 62 t~plE~~L~~v~gv~~i~S~S~~G~s~I~v~f~~g~-d~~~a~~~V~~~v~~~~~~LP~~~~~~~~~~~~~~~~~~~~~~ 140 (1032)
T PRK09577 62 TALIEREMNGAPGLLYTSATSSAGQASLSLTFKQGV-NADLAAVEVQNRLKTVEARLPEPVRRDGIQVEKAADNIQLIVS 140 (1032)
T ss_pred HHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHHhCCcccccCCceEeccCCCceEEEE
Confidence 356899999999999876554444 4556676653 33 3455555542 12211 1111111123344
Q ss_pred Eecc----cch---h-hhHHHHhhhccCCCceEEEeecCCCeEEEEecCCC-----CChhhHHHhhhhc
Q 004259 208 VTGV----LCE---L-DAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRSLVDGIAGR 263 (765)
Q Consensus 208 i~gm----~c~---~-ca~~ie~~l~~~~GV~~v~vn~~~~~~~V~ydp~~-----i~~~~i~~~i~~~ 263 (765)
+.+- +-. . -++.++..|.+.+||.+++++.....+.|..||.. ++..++.+.++..
T Consensus 141 l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~V~~~l~~~ 209 (1032)
T PRK09577 141 LTSDDGRLTGVELGEYASANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDIASAVRAH 209 (1032)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHHHHHHHHHh
Confidence 4332 111 1 13578999999999999999887667778888764 7888888888753
No 104
>PRK09579 multidrug efflux protein; Reviewed
Probab=47.08 E-value=7e+02 Score=31.54 Aligned_cols=140 Identities=12% Similarity=0.154 Sum_probs=75.0
Q ss_pred EEEEeCCCCCh----hhHHHHHHhhhCCCCeeEEEEEeccCEEEE--EECCCCCCHH----HHHHHhHhcC--cchhhhc
Q 004259 48 IQVGVTGMTCA----ACSNSVEGALMGLKGVAKASVALLQNKADV--VFDPDLVKDE----DIKNAIEDAG--FEAEILA 115 (765)
Q Consensus 48 ~~~~i~gm~C~----~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v--~~~~~~~~~~----~i~~~i~~~G--y~~~~~~ 115 (765)
+...-+|.+=. .-...+|++++.++|+.+.+..-..+...+ .++.. .+.+ ++.+.+.+.- .+... .
T Consensus 47 V~t~~pGaspe~vE~~Vt~plE~~L~~v~gi~~i~S~S~~G~s~I~v~f~~g-~d~~~a~~~v~~~v~~v~~~LP~~~-~ 124 (1017)
T PRK09579 47 VTTAYPGANAETIQGYITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIG-ADSDRLFTELLAKANEVKNQLPQDA-E 124 (1017)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECC-CCHHHHHHHHHHHHHHHHHhCCCCC-C
Confidence 44444554422 234778999999999999887655555554 45544 2333 4444444321 11100 0
Q ss_pred ccCCCCCCCCcceeceeeccc--ccch----hhHHHHHhhhcCCCCeeeEEee-eccCeEEEEeCCC-----CCCHHHHH
Q 004259 116 ESSTSGPKPQGTIVGQYTIGG--MTCA----ACVNSVEGILRGLPGVKRAVVA-LATSLGEVEYDPT-----VISKDDIA 183 (765)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~i~g--m~C~----~C~~~Ie~~l~~~~GV~~~~vn-~~~~~~~v~~~~~-----~~~~~~i~ 183 (765)
.+..............+.+.+ .+-. --...++..|++++||.++++. .....+.|..||. .++.+++.
T Consensus 125 ~P~i~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~~i~~~L~~i~GV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~dV~ 204 (1017)
T PRK09579 125 DPVLSKEAADASALMYISFYSEEMSNPQITDYLSRVIQPKLATLPGMAEAEILGNQVFAMRLWLDPVKLAGFGLSAGDVT 204 (1017)
T ss_pred CCeEEeCCCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHhhcCCCceEEEecCCCceEEEEEeCHHHHHHcCCCHHHHH
Confidence 000000000000111222322 1111 0235689999999999998865 2334567777763 36788999
Q ss_pred HHHHhc
Q 004259 184 NAIEDA 189 (765)
Q Consensus 184 ~~i~~~ 189 (765)
++|+..
T Consensus 205 ~al~~~ 210 (1017)
T PRK09579 205 QAVRRY 210 (1017)
T ss_pred HHHHHh
Confidence 999764
No 105
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=46.76 E-value=4.9e+02 Score=32.81 Aligned_cols=197 Identities=13% Similarity=0.108 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHhcCC-----CeEEEEEe-c-CCCceeeeEEeeccCcCCCCEEEEcCCCccCccEE
Q 004259 406 TFVLFGKYLEILAKGKTSDAIKKLVELAP-----ATALLVVK-D-KVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGI 478 (765)
Q Consensus 406 ~~~~~~~~le~~~~~k~~~~l~~l~~~~~-----~~~~v~~~-~-~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~ 478 (765)
++..+-.+++.+..+++.+.++++..... .+...+.. + .-| ....+...+..|.|.+.++.. .+-+|=-
T Consensus 115 ~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~ViRdg~~~~I~~~~lv~G---Div~l~~Gd~IPaD~~il~~~-~l~VdeS 190 (997)
T TIGR01106 115 IITGCFSYYQEAKSSKIMESFKNMVPQQALVIRDGEKMSINAEQVVVG---DLVEVKGGDRIPADLRIISAQ-GCKVDNS 190 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEeeHHHCCCC---CEEEECCCCEEeeeEEEEEcc-CcEEEcc
Confidence 33334455556666677777877643221 11111100 0 113 456778888889998888764 2445655
Q ss_pred EEeccce-eeccccCCCccee----ccCCCCceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhcc-CCChhHHHHH
Q 004259 479 VVWGTSY-VNESMVTGEAVPV----LKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQM-SKAPIQKFAD 552 (765)
Q Consensus 479 vl~g~~~-Vdes~LTGEs~pv----~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~-~k~~~~~~~~ 552 (765)
.+.|++. |.-..-.-+..|. .--.|..+..|+...-=...+.=+..|. +.++++..++... -...++++.+
T Consensus 191 ~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~---i~~~~~~~~~~~~pl~~~~~~~~~ 267 (997)
T TIGR01106 191 SLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGR---IASLASGLENGKTPIAIEIEHFIH 267 (997)
T ss_pred ccCCCCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhH---HHhhhhhcccCCCcHHHHHHHHHH
Confidence 6667665 3221111011121 1235777777763321111122222222 1222222221111 1234566677
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHH
Q 004259 553 FVASIFVPIVVTLALFTWLC-WYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVA 624 (765)
Q Consensus 553 ~~~~~~~~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~ 624 (765)
.+..+.+.+.+++.++.++. +.+.. .+..++...++..-.+.|.++.++...+....
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~v~v~~iP~~L~~~v~i~l~~~~~~m 325 (997)
T TIGR01106 268 IITGVAVFLGVSFFILSLILGYTWLE---------------AVIFLIGIIVANVPEGLLATVTVCLTLTAKRM 325 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHH---------------HHHHHHHHHhhcCCccchHHHHHHHHHHHHHH
Confidence 77766555554444443332 11111 23344455556677777888877777765433
No 106
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=45.85 E-value=1.4e+02 Score=23.28 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=44.1
Q ss_pred eecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCceeEeecCCcceeEEEE
Q 004259 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSGQDKILLQV 208 (765)
Q Consensus 132 ~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~i 208 (765)
+...|+.|+.=.-+..+++++++. .+.+.|..|.. ....++.+.+++.||.......++ +..++.|
T Consensus 2 lD~rg~~CP~Pl~~~~~~l~~l~~---------g~~l~v~~d~~-~~~~~i~~~~~~~g~~~~~~~~~~-~~~~i~i 67 (69)
T cd00291 2 LDLRGLPCPLPVLKTKKALEKLKS---------GEVLEVLLDDP-GAVEDIPAWAKETGHEVLEVEEEG-GVYRILI 67 (69)
T ss_pred ccccCCcCCHHHHHHHHHHhcCCC---------CCEEEEEecCC-cHHHHHHHHHHHcCCEEEEEEEeC-CEEEEEE
Confidence 345689999888888888888653 33444555443 368899999999999975443322 3444443
No 107
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=45.79 E-value=54 Score=26.12 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=40.7
Q ss_pred EEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcchh
Q 004259 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (765)
Q Consensus 50 ~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 112 (765)
+.+.|+.|+.-.-+..+++++++. .....+..+++ .....+....+..||...
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~---------G~~l~V~~d~~-~a~~di~~~~~~~G~~~~ 54 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQD---------GEQLEVKASDP-GFARDAQAWCKSTGNTLI 54 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEECCc-cHHHHHHHHHHHcCCEEE
Confidence 467899999999999999998762 33455555544 456788888999999864
No 108
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=45.41 E-value=1.5e+02 Score=23.58 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=44.7
Q ss_pred eecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCceeEeecCCcceeEEEE
Q 004259 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSGQDKILLQV 208 (765)
Q Consensus 132 ~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~i 208 (765)
+.+.|+.|+.=.-+..++|++++. .+.+.|..|. ....++|.+..++.||+....... .+.+++.|
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~---------G~~l~V~~d~-~~a~~di~~~~~~~G~~~~~~~~~-~~~~~~~I 67 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQD---------GEQLEVKASD-PGFARDAQAWCKSTGNTLISLETE-KGKVKAVI 67 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEECC-ccHHHHHHHHHHHcCCEEEEEEec-CCEEEEEE
Confidence 456799999989999999998863 2233344432 246789999999999998754432 34444443
No 109
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.78 E-value=1.6e+02 Score=23.37 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=38.8
Q ss_pred CHHHHHHHHHhcCCceeEeecC----CcceeEEEEecccchhhhHHHHhhhccCCCceEEEe
Q 004259 178 SKDDIANAIEDAGFEASFVQSS----GQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRF 235 (765)
Q Consensus 178 ~~~~i~~~i~~~Gy~~~~~~~~----~~~~~~~~i~gm~c~~ca~~ie~~l~~~~GV~~v~v 235 (765)
-..+|.+.+.+.|-.+...... ....+.+.++--.-...-..+-+.|++.+||.+|.+
T Consensus 13 ~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 13 VLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 4678999999998887665432 122344445432222356788889999999999874
No 110
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=43.33 E-value=69 Score=27.33 Aligned_cols=66 Identities=18% Similarity=0.119 Sum_probs=44.6
Q ss_pred eceeecccccchhhHHHHHhhhcCCCCeeeEEee-----eccCeEEEEeCCCCCCHHHHHHHHHhcCCceeE
Q 004259 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVA-----LATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195 (765)
Q Consensus 129 ~~~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn-----~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 195 (765)
++.+.+-..+-++ .-.+-+.|.+++||..+++. -.+..+.++.....++.++|.++|+++|-.++-
T Consensus 6 RlVLDVlKP~~p~-i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IHS 76 (95)
T PF02680_consen 6 RLVLDVLKPHEPS-IVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIHS 76 (95)
T ss_dssp EEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEEE
T ss_pred EEEEEeecCCCCC-HHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEEe
Confidence 3344443333222 34567788999999887654 466677777777778999999999999987764
No 111
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=42.93 E-value=37 Score=38.81 Aligned_cols=49 Identities=27% Similarity=0.347 Sum_probs=41.2
Q ss_pred hhhHHHHHhhhcCCCCeeeEEeeeccC------------------eEEEEeCCCCCCHHHHHHHHHh
Q 004259 140 AACVNSVEGILRGLPGVKRAVVALATS------------------LGEVEYDPTVISKDDIANAIED 188 (765)
Q Consensus 140 ~~C~~~Ie~~l~~~~GV~~~~vn~~~~------------------~~~v~~~~~~~~~~~i~~~i~~ 188 (765)
.+|=|-+|..+++++||.++.+-++.+ .+.|.|||..++.++|++..=+
T Consensus 205 gGCFWg~e~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~gtgH~E~V~V~yDp~~is~~~Ll~~f~~ 271 (521)
T PRK14018 205 GGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRHSGHAETVKVTYDADKLSLDTILQYYFR 271 (521)
T ss_pred cCCchhhHHHHccCCCEEEEEEeeCCCCCCCCChhhccCCCCcEEEEEEEECCCcCcHHHHHHHHHH
Confidence 468899999999999999999877554 3789999999999999886633
No 112
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=42.89 E-value=46 Score=31.62 Aligned_cols=48 Identities=38% Similarity=0.541 Sum_probs=39.4
Q ss_pred hhhHHHHHhhhcCCCCeeeEEeeeccC-------------------eEEEEeCCCCCCHHHHHHHHH
Q 004259 140 AACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAIE 187 (765)
Q Consensus 140 ~~C~~~Ie~~l~~~~GV~~~~vn~~~~-------------------~~~v~~~~~~~~~~~i~~~i~ 187 (765)
.+|-|.+|.+..+++||...+|-++.+ .+.|+|||..++-++|++..=
T Consensus 31 ~GCFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydpk~~sy~~Lld~Fw 97 (191)
T KOG1635|consen 31 AGCFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDPKVISYEELLDFFW 97 (191)
T ss_pred ccchhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCcccccHHHHHHHHH
Confidence 468999999999999999988877543 467888998888888887653
No 113
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.84 E-value=1.6e+02 Score=24.88 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=45.1
Q ss_pred eEEEEEeCCCCChhhHHHHHHhhhCCCCeeEEEEE-----eccCEEEEEECCCCCCHHHHHHHhHhcCcchh
Q 004259 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVA-----LLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (765)
Q Consensus 46 ~~~~~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~-----~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 112 (765)
+++.+.+---+-..-.--+.+.|++++||..+++. ..+....+.......+.+++.+.+++.|....
T Consensus 6 RRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IH 77 (97)
T COG1888 6 RRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIH 77 (97)
T ss_pred eeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeee
Confidence 34444444333333344556788999999888764 45555666666666889999999999998653
No 114
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=40.09 E-value=42 Score=35.05 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=37.2
Q ss_pred hhHHHHhhhccCCCceEEEeecCC-------------------CeEEEEecCCCCChhhHHHhhhh
Q 004259 216 DAHFLEGILSNFKGVRQFRFDKIS-------------------GELEVLFDPEALSSRSLVDGIAG 262 (765)
Q Consensus 216 ca~~ie~~l~~~~GV~~v~vn~~~-------------------~~~~V~ydp~~i~~~~i~~~i~~ 262 (765)
|=--+|..+..++||.++++-.++ +.+.|.|||..++.++|++..=+
T Consensus 136 CFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F~~ 201 (283)
T PRK05550 136 CFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVFFE 201 (283)
T ss_pred CchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHh
Confidence 444567788899999999975544 35789999999999999987643
No 115
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=39.34 E-value=15 Score=35.50 Aligned_cols=13 Identities=62% Similarity=0.830 Sum_probs=12.4
Q ss_pred EEecCCCccccCc
Q 004259 650 VIFDKTGTLTQGR 662 (765)
Q Consensus 650 i~fDKTGTLT~g~ 662 (765)
+|||.+||||.+.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6999999999998
No 116
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=38.62 E-value=77 Score=25.26 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=40.3
Q ss_pred EEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcchh
Q 004259 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (765)
Q Consensus 50 ~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 112 (765)
+.+.|..|+.-.-+..+++++++. .....+..+++ .+...+....+..||...
T Consensus 2 lD~rG~~CP~Pvi~~kkal~~l~~---------G~~l~V~~d~~-~s~~ni~~~~~~~g~~v~ 54 (69)
T cd03422 2 LDLRGEPCPYPAIATLEALPSLKP---------GEILEVISDCP-QSINNIPIDARNHGYKVL 54 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEecCc-hHHHHHHHHHHHcCCEEE
Confidence 456799999999999999998773 33445555544 557788888999999874
No 117
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=38.60 E-value=93 Score=24.75 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=40.2
Q ss_pred EEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcchh
Q 004259 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (765)
Q Consensus 50 ~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 112 (765)
+...|..|+.-.-...+++++++. .....+..+++ .+...+....+..||...
T Consensus 2 lD~~G~~CP~P~i~~k~~l~~l~~---------G~~l~V~~dd~-~s~~di~~~~~~~g~~~~ 54 (69)
T cd03423 2 LDTRGLRCPEPVMMLHKKVRKMKP---------GDTLLVLATDP-STTRDIPKFCTFLGHELL 54 (69)
T ss_pred ccccCCcCCHHHHHHHHHHHcCCC---------CCEEEEEeCCC-chHHHHHHHHHHcCCEEE
Confidence 456799999999999999998762 33455555544 457788899999999864
No 118
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=38.56 E-value=1.1e+02 Score=25.13 Aligned_cols=55 Identities=24% Similarity=0.300 Sum_probs=41.4
Q ss_pred EEEEEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcC-cch
Q 004259 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAG-FEA 111 (765)
Q Consensus 47 ~~~~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G-y~~ 111 (765)
..++.+.|+.|+.-.-.+.+++++++ ......|..+++ .+..++.......| |..
T Consensus 5 ~~~LD~rG~~CP~Pv~~~kk~l~~m~---------~Ge~LeV~~ddp-~~~~dIp~~~~~~~~~~l 60 (78)
T COG0425 5 DKVLDLRGLRCPGPVVETKKALAKLK---------PGEILEVIADDP-AAKEDIPAWAKKEGGHEL 60 (78)
T ss_pred ceEEeccCCcCCccHHHHHHHHHcCC---------CCCEEEEEecCc-chHHHHHHHHHHcCCcEE
Confidence 45789999999999999999999987 455666666554 34577777777454 654
No 119
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.52 E-value=1.1e+02 Score=25.88 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHhcCCceeEeecCCcceeEEEEecccchhhhHHHHhhhccCCCceEEEeecCCCeEEEEe
Q 004259 177 ISKDDIANAIEDAGFEASFVQSSGQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLF 246 (765)
Q Consensus 177 ~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~i~gm~c~~ca~~ie~~l~~~~GV~~v~vn~~~~~~~V~y 246 (765)
.+++.|.+.++++||.++... + ..+.+.||+..+++++.+..+.|.-
T Consensus 12 ~~~dri~~~l~e~g~~v~~eG--D---------------------~ivas~pgis~ieik~E~kkL~v~t 58 (96)
T COG4004 12 PDPDRIMRGLSELGWTVSEEG--D---------------------RIVASSPGISRIEIKPENKKLLVNT 58 (96)
T ss_pred CCHHHHHHHHHHhCeeEeecc--c---------------------EEEEecCCceEEEEecccceEEEec
Confidence 368999999999999876411 1 1234678999999999999998875
No 120
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=37.17 E-value=72 Score=25.11 Aligned_cols=52 Identities=23% Similarity=0.465 Sum_probs=37.0
Q ss_pred EEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcchh
Q 004259 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (765)
Q Consensus 50 ~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 112 (765)
+.+.|+.|+.-.-...+++ ++.. .+.+.+..+++ .+...+....+..||...
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~-~s~~~i~~~~~~~G~~~~ 53 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNE-VAKENVSRFAESRGYEVS 53 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcCh-hHHHHHHHHHHHcCCEEE
Confidence 4678999999999999999 5442 22344444433 445788888899999873
No 121
>PF15584 Imm44: Immunity protein 44
Probab=36.51 E-value=17 Score=30.55 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCccCccEEE
Q 004259 461 SGDTLKVLPGTKLPADGIV 479 (765)
Q Consensus 461 ~GDiv~v~~Ge~iP~Dg~v 479 (765)
+.+-..|+.|++|||||+=
T Consensus 13 ~~~~~~I~SG~~iP~~GIw 31 (94)
T PF15584_consen 13 PSEGGVIKSGQEIPCDGIW 31 (94)
T ss_pred CCCCCEEecCCCcccCCeE
Confidence 4455678999999999985
No 122
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=36.30 E-value=9.8e+02 Score=30.16 Aligned_cols=162 Identities=16% Similarity=0.236 Sum_probs=88.9
Q ss_pred EEEEeCCCCC----hhhHHHHHHhhhCCCCeeEEEEEe--ccCEEEEEECCCCCCHH----HHHHHhHhcCcc--hhhhc
Q 004259 48 IQVGVTGMTC----AACSNSVEGALMGLKGVAKASVAL--LQNKADVVFDPDLVKDE----DIKNAIEDAGFE--AEILA 115 (765)
Q Consensus 48 ~~~~i~gm~C----~~C~~~Ie~~l~~~~Gv~~~~v~~--~~~~~~v~~~~~~~~~~----~i~~~i~~~Gy~--~~~~~ 115 (765)
++-.-+|-+= ..-...||++++.++|+.+....- ....+++.++.. .+++ ++.+.+.+.... .. ..
T Consensus 46 V~t~ypGAsae~ve~~Vt~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~-~d~d~A~~~V~~kv~~~~~~LP~~-~~ 123 (1009)
T COG0841 46 VSATYPGASAETVEDSVTQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELG-TDPDTAAVQVQNKIQQAESRLPSG-VQ 123 (1009)
T ss_pred EEEecCCCCHHHHHHHHhHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCC-CChHHHHHHHHHHHHHHHhcCCCc-cC
Confidence 4444455442 345688999999999998876643 444455556554 3344 555555544321 11 00
Q ss_pred ccCCC--CCCCCcceeceeecccccch----hhHHHHHhhhcCCCCeeeEEeeec-cCeEEEEeCCCC-----CCHHHHH
Q 004259 116 ESSTS--GPKPQGTIVGQYTIGGMTCA----ACVNSVEGILRGLPGVKRAVVALA-TSLGEVEYDPTV-----ISKDDIA 183 (765)
Q Consensus 116 ~~~~~--~~~~~~~~~~~~~i~gm~C~----~C~~~Ie~~l~~~~GV~~~~vn~~-~~~~~v~~~~~~-----~~~~~i~ 183 (765)
.+... ...+.....+.+.=+.+.-. --...++..|++++||.++++.=. ...++|..||.. +++.++.
T Consensus 124 ~p~v~~~~~~~~~i~~~al~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV~ 203 (1009)
T COG0841 124 QPGVTVEKSSSNPLLILALTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDVQ 203 (1009)
T ss_pred CCceEeccCCCceEEEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHHH
Confidence 00000 01111112222222223301 124669999999999999998744 667889988854 5788999
Q ss_pred HHHHhcCCceeEe-ecCCcceeEEEEecc
Q 004259 184 NAIEDAGFEASFV-QSSGQDKILLQVTGV 211 (765)
Q Consensus 184 ~~i~~~Gy~~~~~-~~~~~~~~~~~i~gm 211 (765)
++|++.......= -...+.+..++..|-
T Consensus 204 ~ai~~qN~~~~aG~i~~~~~~~~v~~~g~ 232 (1009)
T COG0841 204 SAIRAQNVQVPAGSIGAGPSTATVRAQGR 232 (1009)
T ss_pred HHHHHhCcccCCceecCCCceEEEEecCc
Confidence 9998765433110 011233455555553
No 123
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=35.51 E-value=1.4e+02 Score=24.76 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=42.2
Q ss_pred EEEEEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcchh
Q 004259 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (765)
Q Consensus 47 ~~~~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 112 (765)
..++...|..|+.-.-...+++++++. .+...+..+++ .....+....+..|++..
T Consensus 9 ~~~lD~~Gl~CP~Pll~~kk~l~~l~~---------G~~l~V~~dd~-~~~~di~~~~~~~G~~~~ 64 (81)
T PRK00299 9 DHTLDALGLRCPEPVMMVRKTVRNMQP---------GETLLIIADDP-ATTRDIPSFCRFMDHELL 64 (81)
T ss_pred CeEEecCCCCCCHHHHHHHHHHHcCCC---------CCEEEEEeCCc-cHHHHHHHHHHHcCCEEE
Confidence 357899999999999999999998762 33445544444 456788888888999863
No 124
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=35.37 E-value=1.5e+02 Score=25.02 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=19.1
Q ss_pred HHHHHhhhcCCCCeeeEEeeeccCeEEEEeCC
Q 004259 143 VNSVEGILRGLPGVKRAVVALATSLGEVEYDP 174 (765)
Q Consensus 143 ~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~ 174 (765)
...+.+.|..+||++-...+...+++.|+.+.
T Consensus 19 ~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~ 50 (87)
T PRK10553 19 ISDISTQLNAFPGCEVAVSDAPSGQLIVVVEA 50 (87)
T ss_pred HHHHHHHHHcCCCcEEEeecCCCCeEEEEEEe
Confidence 44566666666666655555555666666544
No 125
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=35.22 E-value=1e+02 Score=24.17 Aligned_cols=53 Identities=25% Similarity=0.317 Sum_probs=39.9
Q ss_pred EEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcchh
Q 004259 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (765)
Q Consensus 50 ~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 112 (765)
+...|+.|+.-.-+..+++++++. .....+..+++ .....+.......||...
T Consensus 2 lD~rg~~CP~Pl~~~~~~l~~l~~---------g~~l~v~~d~~-~~~~~i~~~~~~~g~~~~ 54 (69)
T cd00291 2 LDLRGLPCPLPVLKTKKALEKLKS---------GEVLEVLLDDP-GAVEDIPAWAKETGHEVL 54 (69)
T ss_pred ccccCCcCCHHHHHHHHHHhcCCC---------CCEEEEEecCC-cHHHHHHHHHHHcCCEEE
Confidence 467899999999999999998663 33445555544 457888899999999863
No 126
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.97 E-value=1.9e+02 Score=22.87 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=41.5
Q ss_pred EEECCCCCCHHHHHHHhHhcCcchhhhcccCCCCCCCCcceeceeecccccchhhHHHHHhhhcCCCCeeeEEe
Q 004259 88 VVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVV 161 (765)
Q Consensus 88 v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~v 161 (765)
+...+..-...++...+.+.|-......... ...+...+.+.++--.=......+-+.|+++|||.++.+
T Consensus 5 i~~~d~~g~l~~I~~~la~~~inI~~i~~~~----~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 5 LLLEHRPGVLSKVLNTIAQVRGNVLTINQNI----PIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEecCCCchHHHHHHHHHHcCCCEEEEEeCC----CCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 3333333446788888888887654332211 111233445555442223367889999999999998864
No 127
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=33.88 E-value=1.1e+03 Score=29.94 Aligned_cols=132 Identities=15% Similarity=0.156 Sum_probs=72.3
Q ss_pred hhhHHHHHHhhhCCCCeeEEEEEec---------cCEEEEEECCC---CCCHHHHHHHhHhc-C-cc-hhhhcccCCCCC
Q 004259 58 AACSNSVEGALMGLKGVAKASVALL---------QNKADVVFDPD---LVKDEDIKNAIEDA-G-FE-AEILAESSTSGP 122 (765)
Q Consensus 58 ~~C~~~Ie~~l~~~~Gv~~~~v~~~---------~~~~~v~~~~~---~~~~~~i~~~i~~~-G-y~-~~~~~~~~~~~~ 122 (765)
....+++|+.+.+.|+|.++..... .....+..++. ..+..++.+.+++. . +. +.....+.....
T Consensus 586 ~~~~~~ve~~l~~~~~v~~~~~~~G~~~~~~~~~~~~~~v~l~~~~~r~~~~~~v~~~lr~~l~~~p~~~~~~~~~~~~~ 665 (1040)
T PRK10503 586 AQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDDRVQKVIARLQTAVAKVPGVDLYLQPTQDLT 665 (1040)
T ss_pred HHHHHHHHHHHhhCCCeEEEEEEeccCCCCCCCceEEEEEEecchhhccCCHHHHHHHHHHHHhcCCCcEEeccCCcccc
Confidence 3678899999988899887765432 12234444321 11334554444322 1 11 111000000000
Q ss_pred --CCCcceeceeecccccchh---hHHHHHhhhcCCCCeeeEEeeecc--CeEEEEeCCC-----CCCHHHHHHHHHhc
Q 004259 123 --KPQGTIVGQYTIGGMTCAA---CVNSVEGILRGLPGVKRAVVALAT--SLGEVEYDPT-----VISKDDIANAIEDA 189 (765)
Q Consensus 123 --~~~~~~~~~~~i~gm~C~~---C~~~Ie~~l~~~~GV~~~~vn~~~--~~~~v~~~~~-----~~~~~~i~~~i~~~ 189 (765)
.......+.+++.|-+=.. =+..+++.|++.||+.+++.+... ....++.|+. .++.+++.+.++..
T Consensus 666 ~~~~~~~~~v~i~l~G~d~~~L~~~a~~l~~~l~~~pgv~~v~~~~~~~~~e~~v~id~~k~~~~Gls~~~v~~~l~~~ 744 (1040)
T PRK10503 666 IDTQVSRTQYQFTLQATSLDALSTWVPKLMEKLQQLPQLSDVSSDWQDKGLVAYVNVDRDSASRLGISMADVDNALYNA 744 (1040)
T ss_pred ccCCCCCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCCeEEEEccccCCCceEEEEECHHHHHHcCCCHHHHHHHHHHH
Confidence 0011123566777754221 346789999999999999865444 5667777664 36788888888763
No 128
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=33.84 E-value=6.8e+02 Score=31.77 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=13.5
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHH
Q 004259 336 WALVSVVQFVIGKRFYTAAGRALR 359 (765)
Q Consensus 336 ~~l~~~v~~~~g~~~~~~a~~~l~ 359 (765)
++++..++.+.-+|+++.+|....
T Consensus 636 ~i~~~~~l~~~~~~~~~~~~~~~~ 659 (1109)
T PRK10929 636 FILLCGALSLVTLSLKRAGIPLYL 659 (1109)
T ss_pred HHHHHHHHHHHHHHHHhcccchhc
Confidence 444444444455677777776433
No 129
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=33.82 E-value=2e+02 Score=30.48 Aligned_cols=90 Identities=22% Similarity=0.202 Sum_probs=55.7
Q ss_pred EEEEeCCCCChhhHHHHHHhhhCCCCeeEEEEEeccCEEEEEECCCCCCHHHHHHHhHhcCcchhhhcccCCCCCCCCcc
Q 004259 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQGT 127 (765)
Q Consensus 48 ~~~~i~gm~C~~C~~~Ie~~l~~~~Gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~ 127 (765)
++..++.-.-..|.+.+++.+++.+||.+++.- ...+...+..+..|+. .....+ +++-.
T Consensus 61 i~vyL~~~~~~~~~~~v~~~i~~~~gV~~v~~~--------------sre~~l~~L~~~lg~~-~~~~l~-----~nPLP 120 (297)
T COG2177 61 ITVYLQIDADQDDAALVREKIEGIPGVKSVRFI--------------SREEALKELQPWLGFG-ALLMLD-----ENPLP 120 (297)
T ss_pred EEEEEecCCChHHHHHHHHHHhcCCCcceEEEe--------------CHHHHHHHHHHHcCch-hhhcCC-----CCCCC
Confidence 333333333489999999999999999877663 1234566666777775 221111 11111
Q ss_pred eeceeecccccchhhHHHHHhhhcCCCCeeeEE
Q 004259 128 IVGQYTIGGMTCAACVNSVEGILRGLPGVKRAV 160 (765)
Q Consensus 128 ~~~~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~ 160 (765)
....++++. +.-...+.+++++++||++++
T Consensus 121 ~~~vV~~~~---p~~~~~i~~~l~~l~gV~~V~ 150 (297)
T COG2177 121 DVFVVTPDD---PPQVKAIAAALRDLPGVAEVD 150 (297)
T ss_pred ceEEEEeCC---CccHHHHHHHHHcCccceehh
Confidence 233444444 556778899999999998754
No 130
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=31.09 E-value=9.9e+02 Score=30.36 Aligned_cols=82 Identities=13% Similarity=0.021 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEEEEEecCCCceeeeEEeecc
Q 004259 378 FYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDAL 457 (765)
Q Consensus 378 ~~s~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~ 457 (765)
+|.++..++..++...+...+.+...+++++.+....+.+...+..++-+ . + +. +...
T Consensus 31 ~yfl~i~ilq~ip~~s~~~~~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~--------~---~----n~---~~~~---- 88 (1057)
T TIGR01652 31 LYFLVVALLQQVPILSPTYRGTSIVPLAFVLIVTAIKEAIEDIRRRRRDK--------E---V----NN---RLTE---- 88 (1057)
T ss_pred HHHHHHHHHHcCCCcCCCCccHhHHhHHHHHHHHHHHHHHHHHHHHHhHH--------H---H----hC---cEEE----
Confidence 34444444444444444556666666666666776666665554443311 0 1 11 1111
Q ss_pred CcCC-CCEEEEcCCCccCccEEEEe
Q 004259 458 LIQS-GDTLKVLPGTKLPADGIVVW 481 (765)
Q Consensus 458 ~l~~-GDiv~v~~Ge~iP~Dg~vl~ 481 (765)
-++. |....++..|..|-|.++++
T Consensus 89 v~~~~~~~~~i~~~~l~~GDiv~l~ 113 (1057)
T TIGR01652 89 VLEGHGQFVEIPWKDLRVGDIVKVK 113 (1057)
T ss_pred EECCCCcEEEeeeecccCCCEEEEc
Confidence 2233 67788888889999988885
No 131
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=29.93 E-value=93 Score=29.62 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=37.6
Q ss_pred hhhHHHHhhhccCCCceEEEeecCC-------------------CeEEEEecCCCCChhhHHHhhh
Q 004259 215 LDAHFLEGILSNFKGVRQFRFDKIS-------------------GELEVLFDPEALSSRSLVDGIA 261 (765)
Q Consensus 215 ~ca~~ie~~l~~~~GV~~v~vn~~~-------------------~~~~V~ydp~~i~~~~i~~~i~ 261 (765)
.|=-.+|.+...++||..-+|-.+. +.+.|+|||..++-++|++..=
T Consensus 32 GCFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydpk~~sy~~Lld~Fw 97 (191)
T KOG1635|consen 32 GCFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDPKVISYEELLDFFW 97 (191)
T ss_pred cchhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCcccccHHHHHHHHH
Confidence 3556678888889999888876654 3678999999999999998754
No 132
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=29.84 E-value=2.4e+02 Score=23.22 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=10.0
Q ss_pred hhccCCCceEEEe
Q 004259 223 ILSNFKGVRQFRF 235 (765)
Q Consensus 223 ~l~~~~GV~~v~v 235 (765)
.++.+|||.++..
T Consensus 59 ~i~~l~GVlsa~l 71 (79)
T PF03927_consen 59 AINALPGVLSASL 71 (79)
T ss_dssp HHCCSTTEEEEEE
T ss_pred HHHcCCCceEEEE
Confidence 4678899988864
No 133
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=29.26 E-value=28 Score=28.97 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=15.9
Q ss_pred eeccCcCCCCEEEE-cCCCccCc
Q 004259 454 IDALLIQSGDTLKV-LPGTKLPA 475 (765)
Q Consensus 454 i~~~~l~~GDiv~v-~~Ge~iP~ 475 (765)
+.-.+|.+||.|.| +.||.||-
T Consensus 45 i~~~~i~~Gd~V~V~raGdVIP~ 67 (82)
T PF03120_consen 45 IKELDIRIGDTVLVTRAGDVIPK 67 (82)
T ss_dssp HHHTT-BBT-EEEEEEETTTEEE
T ss_pred HHHcCCCCCCEEEEEECCCccce
Confidence 44567899999987 56999996
No 134
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=28.71 E-value=5.2e+02 Score=32.80 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=26.8
Q ss_pred HHHHHHHHhheeeecccchhhhhHHHHHHHHHHH
Q 004259 594 FVFALMFSISVVVIACPCALGLATPTAVMVATGV 627 (765)
Q Consensus 594 ~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~ 627 (765)
+..++...++++--+.|.++.+++-.+...-.++
T Consensus 399 ~l~~l~iiv~~vP~~LP~~~ti~l~~~~~rL~k~ 432 (1054)
T TIGR01657 399 ILRSLDIITIVVPPALPAELSIGINNSLARLKKK 432 (1054)
T ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHC
Confidence 4556777788888899999999988887776655
No 135
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=27.98 E-value=7.3e+02 Score=26.09 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=24.4
Q ss_pred EEeeeccCeE-EEEeCCCCCCHHHHHHHHHhcCCcee
Q 004259 159 AVVALATSLG-EVEYDPTVISKDDIANAIEDAGFEAS 194 (765)
Q Consensus 159 ~~vn~~~~~~-~v~~~~~~~~~~~i~~~i~~~Gy~~~ 194 (765)
--+++..++. +++++. ..+.+++.+.+++.|++..
T Consensus 35 ~giDFtGG~~~~~~~~~-~~~~~~v~~~~~~~~~~~~ 70 (289)
T PRK13022 35 LGIDFTGGTVIEVRFEQ-PADLEQVREALEKAGFEDA 70 (289)
T ss_pred CCEeeCCCeEEEEEcCC-CCCHHHHHHHHHhcCCCCc
Confidence 4567777754 444443 4789999999999887543
No 136
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=27.82 E-value=1.2e+02 Score=29.05 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=30.5
Q ss_pred hHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCC
Q 004259 142 CVNSVEGILRGLPGVKRAVVALATSLGEVEYDPT 175 (765)
Q Consensus 142 C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~ 175 (765)
=+..|.+.+.+++||.++.+-...+.+.|-++..
T Consensus 76 ~a~~i~~~v~~~~~V~~A~vvv~~~~a~Vav~~~ 109 (177)
T PF09580_consen 76 LADRIANRVKKVPGVEDATVVVTDDNAYVAVDLD 109 (177)
T ss_pred HHHHHHHHHhcCCCceEEEEEEECCEEEEEEEec
Confidence 4788999999999999999999999999988765
No 137
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=27.16 E-value=1.3e+03 Score=28.81 Aligned_cols=170 Identities=14% Similarity=0.059 Sum_probs=77.1
Q ss_pred eeEEeeccCcCCCCEEEEcCCCccCccEEEEeccce-eeccccCCCcceeccCCCCceeeeeeeecceEEEEEEEeCCcc
Q 004259 450 EEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSY-VNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDA 528 (765)
Q Consensus 450 ~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~g~~~-Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t 528 (765)
....+...+..|.|.++++ |+..-+|=-.+.|++. ++-. .|+..- --.|..+..|....-=...+.-+..|.
T Consensus 188 DiV~l~~Gd~IPaD~~li~-g~~l~VdES~LTGES~pv~K~--~~~~n~--v~~GT~v~~G~~~~iV~~tG~~T~~gk-- 260 (941)
T TIGR01517 188 DIVSLSTGDVVPADGVFIS-GLSLEIDESSITGESDPIKKG--APKDSF--LLSGTVVNEGSGRMLVTAVGVNSFGGK-- 260 (941)
T ss_pred CEEEECCCCEecccEEEEE-cCcEEEEecccCCCCCccccc--CCCCce--EEeCCeEEeeEEEEEEEEeCCCcHHHH--
Confidence 4567788889999999885 4344456555667665 3221 122211 245777777763321111111111110
Q ss_pred hHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCcccCCCcchHHHHHHHHhheee
Q 004259 529 VLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGA--YPEQWLPENGTHFVFALMFSISVVV 606 (765)
Q Consensus 529 ~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~vlv 606 (765)
+.+.++..++...-...+.++.+.+....+.+.++..++.++.|.+...... .+..+.......+..++...++..-
T Consensus 261 -i~~~~~~~~~~t~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~llv~~iP 339 (941)
T TIGR01517 261 -LMMELRAEGEDTPLQEKLSELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHFIIAVTIVVVAVP 339 (941)
T ss_pred -HHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHhhCC
Confidence 0011100001111112234445555544444333333333222222100000 0000000001356677777777778
Q ss_pred ecccchhhhhHHHHHHHHHHH
Q 004259 607 IACPCALGLATPTAVMVATGV 627 (765)
Q Consensus 607 ~~~P~al~la~p~~~~~~~~~ 627 (765)
.+.|.++++++..+.....++
T Consensus 340 ~~Lp~~vti~l~~~~~~mak~ 360 (941)
T TIGR01517 340 EGLPLAVTIALAYSMKKMMKD 360 (941)
T ss_pred CchHHHHHHHHHHHHHHHHhC
Confidence 888888888888876555543
No 138
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=27.08 E-value=6e+02 Score=31.45 Aligned_cols=109 Identities=18% Similarity=0.103 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEE----------EEEecCCCceeeeEEeeccCcCCCCEEEEcCCCc
Q 004259 403 MLITFVLFGKYLEILAKGKTSDAIKKLVELAPATAL----------LVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTK 472 (765)
Q Consensus 403 ~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~----------v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~ 472 (765)
++++...++.+.|.+++ |+.++++++....+...+ ....-++=.......+...+.+|-|.++++ |+-
T Consensus 97 iv~~~~~i~~~~e~~a~-ka~~~L~~l~~~~~~V~R~~~~~~dg~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~li~-g~~ 174 (867)
T TIGR01524 97 MVLASGLLGFIQESRAE-RAAYALKNMVKNTATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDIIPADARVIS-ARD 174 (867)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhhhccCeeEEEEecccCCCCeEEEEEhhcCCCCCEEEECCCCEEcccEEEEe-cCc
Confidence 44455567888888876 888889888766554444 111111101113566777888888888776 444
Q ss_pred cCccEEEEeccce-eeccccC--CCccee-----ccCCCCceeeeeeee
Q 004259 473 LPADGIVVWGTSY-VNESMVT--GEAVPV-----LKEINSPVIGGTINL 513 (765)
Q Consensus 473 iP~Dg~vl~g~~~-Vdes~LT--GEs~pv-----~k~~g~~v~aGt~~~ 513 (765)
+-+|=-.+.|++. |+-..-+ .+..+. .--.|..+..|....
T Consensus 175 l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~~ 223 (867)
T TIGR01524 175 LFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQA 223 (867)
T ss_pred eEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEEEE
Confidence 5566666667765 3322111 011111 125788888887443
No 139
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=25.84 E-value=3.1e+02 Score=33.68 Aligned_cols=67 Identities=22% Similarity=0.088 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHHH
Q 004259 552 DFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVG 628 (765)
Q Consensus 552 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~~ 628 (765)
-++...++.+.++..+.+.+.....+... .....+++-....+.--+.|-+|.+.+-.|...-.++.
T Consensus 387 ~~fi~~l~~ia~~gfiy~~i~l~~~g~~~----------~~iiirsLDliTi~VPPALPAaltvG~~~a~~RLkkk~ 453 (1140)
T KOG0208|consen 387 FKFILFLVIIALIGFIYTAIVLNLLGVPL----------KTIIIRSLDLITIVVPPALPAALTVGIIYAQSRLKKKG 453 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHcCCCH----------HHHhhhhhcEEEEecCCCchhhhhHHHHHHHHHHHhcC
Confidence 34444455555544444444444444321 12344555555555566778888888877777665554
No 140
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=25.31 E-value=2.1e+02 Score=34.74 Aligned_cols=188 Identities=16% Similarity=0.170 Sum_probs=86.6
Q ss_pred HHHHHHHhchHHHHHHHHHhcCC-----CeEEEEEe-c-CCCceeeeEEeeccCcCCCCEEEEcCCCccCccEEEEeccc
Q 004259 412 KYLEILAKGKTSDAIKKLVELAP-----ATALLVVK-D-KVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTS 484 (765)
Q Consensus 412 ~~le~~~~~k~~~~l~~l~~~~~-----~~~~v~~~-~-~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~g~~ 484 (765)
.+++.+..+++.+.++++..... .+...+.. + .-| ....+...+..|-|-++++ |+..-+|=-.+.|++
T Consensus 72 ~~~qe~~a~~~~~~L~~~~~~~~~V~Rdg~~~~I~~~~Lv~G---DiV~l~~Gd~IPaDg~vi~-g~~~~VDeS~LTGES 147 (755)
T TIGR01647 72 GFIEENKAGNAVEALKQSLAPKARVLRDGKWQEIPASELVPG---DVVRLKIGDIVPADCRLFE-GDYIQVDQAALTGES 147 (755)
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEECCEEEEEEhhhCcCC---CEEEECCCCEEeceEEEEe-cCceEEEcccccCCc
Confidence 34555666677777877644222 11122210 0 112 3466777778888877775 333444555555555
Q ss_pred e-eeccccCCCcceeccCCCCceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhc-cCCChhHHHHHHHHHHHHHHH
Q 004259 485 Y-VNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQ-MSKAPIQKFADFVASIFVPIV 562 (765)
Q Consensus 485 ~-Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~-~~k~~~~~~~~~~~~~~~~~~ 562 (765)
. |+-. .|. .--.|..+..|+...-=...+.-+..| .+.++++..+... .-...+.+....+....+.++
T Consensus 148 ~PV~K~--~~~----~v~aGT~v~~G~~~~~V~~tG~~T~~g---~i~~lv~~~~~~~~~lq~~~~~i~~~~~~~~~~~~ 218 (755)
T TIGR01647 148 LPVTKK--TGD----IAYSGSTVKQGEAEAVVTATGMNTFFG---KAAALVQSTETGSGHLQKILSKIGLFLIVLIGVLV 218 (755)
T ss_pred cceEec--cCC----eeeccCEEEccEEEEEEEEcCCccHHH---HHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4 3221 121 123466666665433211111111111 1112222222111 111223444555544333333
Q ss_pred HHHHHHHHHHH--HHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHH
Q 004259 563 VTLALFTWLCW--YVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGV 627 (765)
Q Consensus 563 l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~ 627 (765)
++..++.++.. -+. ..+..++...++..-.+.|.++++++-.+.....++
T Consensus 219 ~i~~~~~~~~~~~~~~---------------~~~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak~ 270 (755)
T TIGR01647 219 LIELVVLFFGRGESFR---------------EGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKK 270 (755)
T ss_pred HHHHHHHHHHcCCCHH---------------HHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhC
Confidence 33333333211 011 124456667777788888988888888876655544
No 141
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=24.93 E-value=46 Score=31.30 Aligned_cols=26 Identities=38% Similarity=0.632 Sum_probs=23.0
Q ss_pred HhhhcCCcEEEecCCCccccCceEEE
Q 004259 641 LERAQKIKYVIFDKTGTLTQGRATVT 666 (765)
Q Consensus 641 le~lg~v~~i~fDKTGTLT~g~~~v~ 666 (765)
.+++.+++.+++|=-||||.|++-+.
T Consensus 2 ~~ra~~IkLli~DVDGvLTDG~ly~~ 27 (170)
T COG1778 2 IARAKNIKLLILDVDGVLTDGKLYYD 27 (170)
T ss_pred hhhhhhceEEEEeccceeecCeEEEc
Confidence 46788999999999999999998764
No 142
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=24.71 E-value=2.8e+02 Score=22.71 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHhHhcCcchhhhcccCCCCCCCCcceeceeecccccchhhHHHHHhhhcCCCCeeeEEe
Q 004259 91 DPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVV 161 (765)
Q Consensus 91 ~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~v 161 (765)
++..--.+.+...+.+.||...-..-.. ..+++..++.+.++ -......+.+.|+++..|.++++
T Consensus 11 ~n~pGVL~Ri~~lf~rRGfnI~sl~v~~---t~~~~~sriti~v~---~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 11 RFRPEVLERVLRVVRHRGFQVCSMNMTQ---NTDAQNINIELTVA---SERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred ECCccHHHHHHHHHhcCCeeeeeEEeee---cCCCCEEEEEEEEC---CCchHHHHHHHHhcCcCeEEEEE
Confidence 3333446788888899999865433221 12344556677774 37788999999999999998875
No 143
>PHA02669 hypothetical protein; Provisional
Probab=24.71 E-value=1.6e+02 Score=27.59 Aligned_cols=47 Identities=28% Similarity=0.359 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHHh-chHHHHHHHHH
Q 004259 365 MDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAK-GKTSDAIKKLV 430 (765)
Q Consensus 365 md~l~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~le~~~~-~k~~~~l~~l~ 430 (765)
|..|+.+++.++.+|- +++.+-+++-+|-..|...+ .|..+.+++|.
T Consensus 1 m~~LVii~iIvavi~L-------------------TgAaiYlLiEiGLAaERanKrsRvK~nMRkLa 48 (210)
T PHA02669 1 MMALVLIGIIVAVIYL-------------------TGAAIYLLIEIGLAAERANKRSRVKANMRKLA 48 (210)
T ss_pred CceeehhHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4567777776665442 34444455556655554433 23444555553
No 144
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=24.28 E-value=1.5e+02 Score=25.31 Aligned_cols=50 Identities=24% Similarity=0.335 Sum_probs=37.2
Q ss_pred HHHHHhhhCCCCeeEEEEE-----eccCEEEEEECCCCCCHHHHHHHhHhcCcch
Q 004259 62 NSVEGALMGLKGVAKASVA-----LLQNKADVVFDPDLVKDEDIKNAIEDAGFEA 111 (765)
Q Consensus 62 ~~Ie~~l~~~~Gv~~~~v~-----~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~ 111 (765)
-.+.+.|.+++||..+++. -.+....+.......+.+++.+++++.|...
T Consensus 20 ~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~I 74 (95)
T PF02680_consen 20 VELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVI 74 (95)
T ss_dssp HHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EE
T ss_pred HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeE
Confidence 3456789999999988764 4556666666666688999999999999765
No 145
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=23.58 E-value=3.9e+02 Score=22.61 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=36.5
Q ss_pred EEeCCCCCCHHHHHHHHHhc---CCceeEeecC--CcceeEEEEec-c-cchhhhHHHHhhhccCCCceEEEee
Q 004259 170 VEYDPTVISKDDIANAIEDA---GFEASFVQSS--GQDKILLQVTG-V-LCELDAHFLEGILSNFKGVRQFRFD 236 (765)
Q Consensus 170 v~~~~~~~~~~~i~~~i~~~---Gy~~~~~~~~--~~~~~~~~i~g-m-~c~~ca~~ie~~l~~~~GV~~v~vn 236 (765)
|......++.+++.+.|++. ||...-.... .-+-..+++.- | +..--...+|+.+++.+||.++.+-
T Consensus 10 V~P~s~evDle~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~~~~vv~D~~g~td~lee~i~~ve~V~svev~ 83 (88)
T TIGR00489 10 VMPESPDVDLEALKEKIKERIPEGVEIRKIDEEPIAFGLVAINVMVVMGDAEGGTEAAEESLSGIEGVESVEVT 83 (88)
T ss_pred ECCCCCccCHHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeEEEEEEecCCcChHHHHHHHhcCCCccEEEEE
Confidence 33333447888888888753 4443322111 01111122211 1 1122347899999999999998863
No 146
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=22.47 E-value=4.2e+02 Score=22.16 Aligned_cols=16 Identities=38% Similarity=0.329 Sum_probs=6.2
Q ss_pred hHHHHHHHH-HhcCCCe
Q 004259 421 KTSDAIKKL-VELAPAT 436 (765)
Q Consensus 421 k~~~~l~~l-~~~~~~~ 436 (765)
|..+..+++ .++.|..
T Consensus 26 K~~k~~~~m~~~L~~Gd 42 (84)
T TIGR00739 26 KRRKAHKKLIESLKKGD 42 (84)
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 333333333 3344433
No 147
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=22.24 E-value=1.3e+02 Score=34.60 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=37.5
Q ss_pred hhHHHHhhhccCCCceEEEeecCCC------------------eEEEEecCCCCChhhHHHhhhh
Q 004259 216 DAHFLEGILSNFKGVRQFRFDKISG------------------ELEVLFDPEALSSRSLVDGIAG 262 (765)
Q Consensus 216 ca~~ie~~l~~~~GV~~v~vn~~~~------------------~~~V~ydp~~i~~~~i~~~i~~ 262 (765)
|=--+|..+.+++||.++++-.+++ .+.|.|||..++.++|++..=+
T Consensus 207 CFWg~e~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~gtgH~E~V~V~yDp~~is~~~Ll~~f~~ 271 (521)
T PRK14018 207 CFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRHSGHAETVKVTYDADKLSLDTILQYYFR 271 (521)
T ss_pred CchhhHHHHccCCCEEEEEEeeCCCCCCCCChhhccCCCCcEEEEEEEECCCcCcHHHHHHHHHH
Confidence 4445677888999999999765543 4789999999999999987644
No 148
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=22.09 E-value=4.5e+02 Score=21.63 Aligned_cols=68 Identities=15% Similarity=0.049 Sum_probs=46.5
Q ss_pred ceeecccccchhhHHHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCCHHHHHHHHHhcCCceeEeecCCcceeEEEE
Q 004259 130 GQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSGQDKILLQV 208 (765)
Q Consensus 130 ~~~~i~gm~C~~C~~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~i 208 (765)
..+...|..|+.=.-+..+++++++.- +.+.|..+.. ...++|....+..|++...... +.+.+++.|
T Consensus 10 ~~lD~~Gl~CP~Pll~~kk~l~~l~~G---------~~l~V~~dd~-~~~~di~~~~~~~G~~~~~~~~-~~g~~~~~I 77 (81)
T PRK00299 10 HTLDALGLRCPEPVMMVRKTVRNMQPG---------ETLLIIADDP-ATTRDIPSFCRFMDHELLAQET-EQLPYRYLI 77 (81)
T ss_pred eEEecCCCCCCHHHHHHHHHHHcCCCC---------CEEEEEeCCc-cHHHHHHHHHHHcCCEEEEEEe-cCCEEEEEE
Confidence 357888999999889999999988632 2333333322 4678898999999999864333 234555554
No 149
>PRK06788 flagellar motor switch protein; Validated
Probab=21.67 E-value=5.8e+02 Score=22.97 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=20.3
Q ss_pred Cceeeeeeee-cceEEEEEEEeCCcchHHHHHH
Q 004259 504 SPVIGGTINL-HGVLHIQATKVGSDAVLSQIIS 535 (765)
Q Consensus 504 ~~v~aGt~~~-~g~~~~~v~~~g~~t~~~~i~~ 535 (765)
-.+|.|.... ++..-++++....+-.-+.+++
T Consensus 78 ~~~f~G~~Gv~~~~~AVrItei~~~~~~~~~~~ 110 (119)
T PRK06788 78 MKVGIGEAIVMDEKFGIIISEIEADKKQAALMK 110 (119)
T ss_pred EEEEEEEEEEECCEEEEEEEEecChHHHHHHHH
Confidence 3556666554 4677888888877655544433
No 150
>PRK09579 multidrug efflux protein; Reviewed
Probab=21.57 E-value=1.7e+03 Score=28.13 Aligned_cols=139 Identities=11% Similarity=0.029 Sum_probs=72.6
Q ss_pred hhhHHHHHHhhhCCCCeeEEEEEec-----cCEEEEEECCC---CCCHHHHHHHhHhc--Ccc-hhhhcccCCCCCCCCc
Q 004259 58 AACSNSVEGALMGLKGVAKASVALL-----QNKADVVFDPD---LVKDEDIKNAIEDA--GFE-AEILAESSTSGPKPQG 126 (765)
Q Consensus 58 ~~C~~~Ie~~l~~~~Gv~~~~v~~~-----~~~~~v~~~~~---~~~~~~i~~~i~~~--Gy~-~~~~~~~~~~~~~~~~ 126 (765)
....+++++.+++.|++.+...... .+...+...+. ..+.+++.+.+++. .++ +...............
T Consensus 574 ~~~~~~ie~~l~~~p~v~~~~~~~G~~~~~~~~~~i~l~~~~~r~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~g~g~ 653 (1017)
T PRK09579 574 NAYTDEFTPIFKSFPEYYSSFQINGFNGVQSGIGGFLLKPWNERERTQMELLPLVQAKLEEIPGLQIFGFNLPSLPGTGE 653 (1017)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEEeccCCCccceEEEEecchHhccCCHHHHHHHHHHHHhcCCCcEEEeecCCCCCCCCC
Confidence 3577889999988888876653221 12233333222 11334444444321 121 1100000000000011
Q ss_pred ceeceeecccc-cch---hhHHHHHhhhcCCCCeeeEEeeeccC--eEEEEeCCC-----CCCHHHHHHHHHh--cCCce
Q 004259 127 TIVGQYTIGGM-TCA---ACVNSVEGILRGLPGVKRAVVALATS--LGEVEYDPT-----VISKDDIANAIED--AGFEA 193 (765)
Q Consensus 127 ~~~~~~~i~gm-~C~---~C~~~Ie~~l~~~~GV~~~~vn~~~~--~~~v~~~~~-----~~~~~~i~~~i~~--~Gy~~ 193 (765)
...+.+++.|- +=. .-+..+++.+++.+|+.+++.+...+ .+.+..|+. .++++++.+.+.. -|..+
T Consensus 654 ~~~v~i~i~gg~d~~~L~~~a~~l~~~l~~~~g~~~v~~~~~~~~~el~i~vd~~ka~~~Gls~~~i~~~l~~~~~G~~~ 733 (1017)
T PRK09579 654 GLPFQFVINTANDYESLLQVAQRVKQRAQESGKFAFLDIDLAFDKPEVVVDIDRAKAAQMGVSMQDLGGTLATLLGEGEI 733 (1017)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHcCCCcEEeeccccCCCceEEEEECHHHHHHcCCCHHHHHHHHHHHhCCcee
Confidence 11355666542 221 24778999999999999998776444 556666553 2678888888876 34444
Q ss_pred eEe
Q 004259 194 SFV 196 (765)
Q Consensus 194 ~~~ 196 (765)
...
T Consensus 734 ~~~ 736 (1017)
T PRK09579 734 NRF 736 (1017)
T ss_pred eEE
Confidence 433
No 151
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=21.50 E-value=1.2e+03 Score=26.43 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=78.7
Q ss_pred eeEEeeccCcCCCCEEEEcCCCccCccEEEEeccce-eeccccCCCcceeccCCCCceeeeeeeecceEEEEEEEeCCcc
Q 004259 450 EEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSY-VNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDA 528 (765)
Q Consensus 450 ~~~~i~~~~l~~GDiv~v~~Ge~iP~Dg~vl~g~~~-Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t 528 (765)
....+...+..|-|.+.+.. ..-+|--.+.|++. +.-. .|+. ...|..++.|+....=.....- ....
T Consensus 56 Div~v~~G~~iP~Dg~vl~g--~~~vdes~LTGEs~pv~k~--~g~~----v~~gs~~~~G~~~~~v~~~~~~---s~~~ 124 (499)
T TIGR01494 56 DIVLVKSGEIVPADGVLLSG--SCFVDESNLTGESVPVLKT--AGDA----VFAGTYVFNGTLIVVVSATGPN---TFGG 124 (499)
T ss_pred CEEEECCCCEeeeeEEEEEc--cEEEEcccccCCCCCeeec--cCCc----cccCcEEeccEEEEEEEEeccc---cHHH
Confidence 45677888888999888866 45556666667765 3322 1443 2568888888876531111110 1111
Q ss_pred hHHHHHHHHHHhccC-CChhHHHH-HHHHHHHHHHHHHHHHHHHHHHH----HHhhcCCCCCcccCCCcchHHHHHHHHh
Q 004259 529 VLSQIISLVETAQMS-KAPIQKFA-DFVASIFVPIVVTLALFTWLCWY----VAGVLGAYPEQWLPENGTHFVFALMFSI 602 (765)
Q Consensus 529 ~~~~i~~~~~~~~~~-k~~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i 602 (765)
.++++++.-.+.+.. .....++. ..+....+.+.++..+.....+. +. ..+..++...+
T Consensus 125 ~i~~~v~~~~~~k~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~---------------~~~~~~~~vl~ 189 (499)
T TIGR01494 125 KIAVVVYTGFETKTPLQPKLDRLSDIIFILFVLLIALAVFLFWAIGLWDPNSIF---------------KIFLRALILLV 189 (499)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHH---------------HHHHHHHHHHH
Confidence 122222222221122 22233444 33443333333333332222211 11 13556677777
Q ss_pred heeeecccchhhhhHHHHHHHHHH
Q 004259 603 SVVVIACPCALGLATPTAVMVATG 626 (765)
Q Consensus 603 ~vlv~~~P~al~la~p~~~~~~~~ 626 (765)
...-.+.|.+++++.-.+.....+
T Consensus 190 ~~~P~aL~~~~~~~~~~~~~~~~~ 213 (499)
T TIGR01494 190 IAIPIALPLAVTIALAVGDARLAK 213 (499)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHH
Confidence 778888898888888888766654
No 152
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=21.49 E-value=1.5e+03 Score=28.13 Aligned_cols=216 Identities=14% Similarity=0.120 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCe-----EEEEEecCCCceeeeEEeeccCcCCCCEEEEcCCCccCcc
Q 004259 402 AMLITFVLFGKYLEILAKGKTSDAIKKLVELAPAT-----ALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPAD 476 (765)
Q Consensus 402 ~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~-----~~v~~~~~~g~~~~~~~i~~~~l~~GDiv~v~~Ge~iP~D 476 (765)
.++++...++.+.|.+++ ++.+.++++....... ...+ .-++=.......+...+..|-|.+.++.. ..-+|
T Consensus 44 ~vi~~~~~i~~~qe~~a~-~~~~~L~~~~~~~~~ViRdg~~~~I-~~~~Lv~GDiv~l~~Gd~IPaD~~ll~~~-~l~Vd 120 (917)
T TIGR01116 44 LILVANAIVGVWQERNAE-KAIEALKEYESEHAKVLRDGRWSVI-KAKDLVPGDIVELAVGDKVPADIRVLSLK-TLRVD 120 (917)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhccCCCceEEEECCEEEEE-EHHHCCCCCEEEECCCCEeeccEEEEEec-ceEEE
Confidence 444555566666666665 5666777665432221 1111 11110011456778888999999888764 23345
Q ss_pred EEEEeccce-eeccc--cCCCcc-ee----ccCCCCceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhc-cCCChh
Q 004259 477 GIVVWGTSY-VNESM--VTGEAV-PV----LKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQ-MSKAPI 547 (765)
Q Consensus 477 g~vl~g~~~-Vdes~--LTGEs~-pv----~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~-~~k~~~ 547 (765)
=-.+.|++. +.-.. ..++.. +. .--.|..+..|....-=..++.=++.| .+.+.++..++.. .-...+
T Consensus 121 eS~LTGES~pv~K~~~~~~~~~~~~~~~~n~l~~GT~v~~G~~~~~V~~tG~~T~~g---ki~~~~~~~~~~~t~lq~~l 197 (917)
T TIGR01116 121 QSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGMSTEIG---KIRDEMRAAEQEDTPLQKKL 197 (917)
T ss_pred cccccCCCCcccccccccCccccCcccccceeeeCCEEecceEEEEEEEeCCCCHHH---HHHHHhhccCCCCCCHHHHH
Confidence 445556654 22211 111111 11 125677777776333211112222222 1112221111111 112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHHHHHHHHH
Q 004259 548 QKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGV 627 (765)
Q Consensus 548 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~~~~~~~~ 627 (765)
.++...+..+.+.+.+++.++....|........+...+. ..+..++..+++..-.+.|..+.++.-.+.....++
T Consensus 198 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~l~v~~iP~~Lp~~vti~l~~~~~~m~~~ 273 (917)
T TIGR01116 198 DEFGELLSKVIGLICILVWVINIGHFNDPALGGGWIQGAI----YYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAKK 273 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHH----HHHHHHHhhhhhccccccHHHHHHHHHHHHHHHHHC
Confidence 5555555554443333333322211110000000000000 123345556677778888888888877776554443
No 153
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=21.35 E-value=4.4e+02 Score=26.59 Aligned_cols=92 Identities=10% Similarity=0.068 Sum_probs=52.1
Q ss_pred HHHHhhhcCCCCeeeEEeeeccCeEEEEeCCCCCC--HHHHHHHHHhcCCceeEeecC---CcceeEE--EEeccc-chh
Q 004259 144 NSVEGILRGLPGVKRAVVALATSLGEVEYDPTVIS--KDDIANAIEDAGFEASFVQSS---GQDKILL--QVTGVL-CEL 215 (765)
Q Consensus 144 ~~Ie~~l~~~~GV~~~~vn~~~~~~~v~~~~~~~~--~~~i~~~i~~~Gy~~~~~~~~---~~~~~~~--~i~gm~-c~~ 215 (765)
..+++.+++.++-.+-+ ..-.+.+..+++... .+.+.+.+++.+|+..-.+.. +.++..+ .+.... ...
T Consensus 124 ~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~ 200 (225)
T PRK15385 124 REAAQRINQLPVSAEGE---KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRK 200 (225)
T ss_pred HHHHHHHhhcccccccc---eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchh
Confidence 55777777766531111 112334444443221 356678888999988765542 2333333 333222 234
Q ss_pred hhHHHHhhhccCCCceEEEeecC
Q 004259 216 DAHFLEGILSNFKGVRQFRFDKI 238 (765)
Q Consensus 216 ca~~ie~~l~~~~GV~~v~vn~~ 238 (765)
.-..+-..|...|||.+++.+..
T Consensus 201 ~le~iv~~L~~~pgV~~v~W~~~ 223 (225)
T PRK15385 201 TRELIISRIGDNDNITAIHWSID 223 (225)
T ss_pred hHHHHHHHHhCCCCeEEEEEEec
Confidence 45667777888999999998753
No 154
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=20.97 E-value=1.1e+03 Score=29.57 Aligned_cols=203 Identities=15% Similarity=0.141 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcCCCeEE----EEEecC---CCceeeeEEeeccCcCCCCEEEEcCCCcc
Q 004259 401 SAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATAL----LVVKDK---VGKCIEEREIDALLIQSGDTLKVLPGTKL 473 (765)
Q Consensus 401 ~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~----v~~~~~---~g~~~~~~~i~~~~l~~GDiv~v~~Ge~i 473 (765)
..++++..++| +.+.+...++.++++++.....+.-+ +...-+ -| ....+...+.+|-|..+++..+ .
T Consensus 110 ~~~i~~n~~~g-~~qe~~a~~~l~~lk~~~~~~~~V~R~g~~~~i~a~eLVpG---DiV~l~~gd~vPAD~rLl~~~~-l 184 (917)
T COG0474 110 LLVVVINALLG-FVQEYRAEKALEALKKMSSPKAKVLRDGKFVEIPASELVPG---DIVLLEAGDVVPADLRLLESSD-L 184 (917)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCceEEEeCCcEEEecHHHCCCC---cEEEECCCCccccceEEEEecC-c
Confidence 34444444555 77777777888888887664433222 111101 13 4577889999999999999887 5
Q ss_pred CccEEEEeccce-eecccc--CCCcc------eeccCCCCceeeeeeeecceEEEEEEEeCCcchHHHHHHHHHHhccCC
Q 004259 474 PADGIVVWGTSY-VNESMV--TGEAV------PVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSK 544 (765)
Q Consensus 474 P~Dg~vl~g~~~-Vdes~L--TGEs~------pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k 544 (765)
-+|=-.+.|++. |+-... +.|.. .-.--.|..|..|+-..--..++.-|..|.-+..-+-.+ .....-.
T Consensus 185 ~VdEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~--~~~t~l~ 262 (917)
T COG0474 185 EVDESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKK--EVKTPLQ 262 (917)
T ss_pred eEEcccccCCCcchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhcccc--ccCCcHH
Confidence 666666667764 222111 11111 112245777777773332222333333333222211110 1111111
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhcCCCCCcccCCCcchHHHHHHHHhheeeecccchhhhhHHHH
Q 004259 545 APIQKFADFVASIFVPIVVTLALFTWLC----WYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTA 620 (765)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~p~~ 620 (765)
..+.++...+....+.+.++..++.+.. |.- .+..++..+++++-.+.|.-+-++..++
T Consensus 263 ~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~-----------------~~~~~v~l~va~IPegLp~~vti~la~g 325 (917)
T COG0474 263 RKLNKLGKFLLVLALVLGALVFVVGLFRGGNGLLE-----------------SFLTALALAVAAVPEGLPAVVTIALALG 325 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH-----------------HHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 2344555555554444444444444332 221 3556777888888889998888888887
Q ss_pred HHHHHHH
Q 004259 621 VMVATGV 627 (765)
Q Consensus 621 ~~~~~~~ 627 (765)
...-.++
T Consensus 326 ~~~mak~ 332 (917)
T COG0474 326 AQRMAKD 332 (917)
T ss_pred HHHHHhc
Confidence 6665544
No 155
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=20.26 E-value=1.2e+02 Score=27.76 Aligned_cols=38 Identities=16% Similarity=0.643 Sum_probs=24.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 004259 549 KFADFVASIF-VPIVVTLALFTWLCWYVAGVLGAYPEQW 586 (765)
Q Consensus 549 ~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~~~~~~~~~~ 586 (765)
++.+.++.+. .|..+++++++.++|...+....+...|
T Consensus 3 r~s~~is~~~gs~~~f~~~~~~Ii~W~i~Gp~~~~sdtW 41 (132)
T PF04120_consen 3 RFSNWISDVAGSPWAFVIAVAVIIVWAISGPVFGFSDTW 41 (132)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCcchH
Confidence 4455555544 3677777777888888877554444433
No 156
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=20.26 E-value=1.2e+02 Score=27.60 Aligned_cols=53 Identities=25% Similarity=0.323 Sum_probs=38.3
Q ss_pred CCEEEEcCCC---ccCccEEEEe----cc---------------ceeeccccCCCcceeccCCCCceeeeeeeec
Q 004259 462 GDTLKVLPGT---KLPADGIVVW----GT---------------SYVNESMVTGEAVPVLKEINSPVIGGTINLH 514 (765)
Q Consensus 462 GDiv~v~~Ge---~iP~Dg~vl~----g~---------------~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~ 514 (765)
||=+-+.|-+ .-|+||+|.. +. .-+|+..|.||..-...+.||.|-+|+.+.+
T Consensus 26 G~GvaI~P~~~~v~AP~~G~v~~i~~T~HA~~i~~~~G~eiLiHiGidTv~l~g~gF~~~vk~Gd~V~~G~~l~~ 100 (124)
T cd00210 26 GDGFAIKPSDGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKLNGEGFTSHVEEGQRVKQGDKLLE 100 (124)
T ss_pred cceEEEEccCCeEECcCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeeeeecCCCceEEEecCCCEEcCCCEEEE
Confidence 4545554432 3589998873 11 1278999999998888899999999987764
Done!