Your job contains 1 sequence.
>004260
MDTYSSGEDLVLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQ
IRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPRPKRKPRNPYPRKTCTNAPMSQIGAK
DGKLRSSVSSLRCNQVLDLEKEPICDRPNGDEKPTYTIESQKDNCSEVFILHQEAHCSSV
SSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQDETRESYVTVELKANEKFGKPDAKLAL
QDNGSSKPLNLENACPSHEKSVHGEKRDDVADALPTAEVQATQNYPRHVNVHILDGSLGT
GTQSPSDMPMQESIFHPIGEVHGNPNLFTNPAASATTENESNVPKSTHQSFPTFHPPFTQ
FRHDQDDYRSFLHISSAFSSLIVSTLLQNPAAHAAASFAATFWPYTNMETSADSPTCPQG
GFLSRQMSSPPSMAAIAAATVAAATAWWAAHGLLPLCAPFHAPFICPPACATAVSSMDTA
QVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKME
LKATDHEKNSEENELHDSNKTKNRKQVDRSSCGSNTPSSSEVETDALEKQEKGKEESKEI
DPSLPATDPGNRRSRSSSNITDSWKEVSEVGRLAFQALFSREVLPQSFSPPHDLKDKMQQ
DNVEDKQNGNKKDGDKSLFDLNSKTWGSCFGHQEVEKSTVSGVENNGGEGLLTIGLGHGK
LKARRTGFKPYKRCSVEAKENRILNTGNQAEEKCPKRIRVEGATT
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004260
(765 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2200970 - symbol:LHY "LATE ELONGATED HYPOCOTYL... 470 7.4e-103 3
TAIR|locus:2044345 - symbol:CCA1 "circadian clock associa... 458 7.7e-78 3
TAIR|locus:2014114 - symbol:EPR1 "EARLY-PHYTOCHROME-RESPO... 294 7.1e-31 3
TAIR|locus:2169135 - symbol:RVE2 "REVEILLE 2" species:370... 294 1.4e-29 2
TAIR|locus:504955668 - symbol:AT3G10113 species:3702 "Ara... 294 9.6e-29 2
TAIR|locus:2167210 - symbol:RVE1 "REVEILLE 1" species:370... 296 5.7e-27 2
TAIR|locus:2149589 - symbol:AT5G52660 species:3702 "Arabi... 247 8.8e-22 2
TAIR|locus:2124928 - symbol:AT4G01280 species:3702 "Arabi... 237 1.3e-20 2
TAIR|locus:2075049 - symbol:RVE8 "REVEILLE 8" species:370... 238 5.0e-19 1
TAIR|locus:2025411 - symbol:ASG4 "ALTERED SEED GERMINATIO... 237 6.4e-19 1
TAIR|locus:2151251 - symbol:LCL1 "LHY/CCA1-like 1" specie... 229 4.6e-18 1
DICTYBASE|DDB_G0288783 - symbol:mybG "myb domain-containi... 238 1.1e-16 2
DICTYBASE|DDB_G0277927 - symbol:mybH "SWIRM domain-contai... 149 4.2e-08 3
DICTYBASE|DDB_G0274463 - symbol:mybJ "myb domain-containi... 144 5.8e-08 2
DICTYBASE|DDB_G0289151 - symbol:mybI "myb domain-containi... 139 1.0e-06 2
ZFIN|ZDB-GENE-041014-28 - symbol:mysm1 "Myb-like, SWIRM a... 116 0.00012 2
TAIR|locus:2166459 - symbol:AT5G05790 species:3702 "Arabi... 121 0.00020 1
TAIR|locus:2154508 - symbol:AT5G58900 species:3702 "Arabi... 117 0.00061 1
TAIR|locus:2150149 - symbol:AT5G01200 species:3702 "Arabi... 116 0.00066 1
MGI|MGI:2683486 - symbol:Rere "arginine glutamic acid dip... 87 0.00074 4
TAIR|locus:2042872 - symbol:AT2G38090 species:3702 "Arabi... 116 0.00085 1
>TAIR|locus:2200970 [details] [associations]
symbol:LHY "LATE ELONGATED HYPOCOTYL" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA;TAS] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0009723 "response to ethylene stimulus"
evidence=IEP;RCA] [GO:0009733 "response to auxin stimulus"
evidence=IEP;RCA] [GO:0009737 "response to abscisic acid stimulus"
evidence=IEP;RCA] [GO:0009739 "response to gibberellin stimulus"
evidence=IEP;RCA] [GO:0009751 "response to salicylic acid stimulus"
evidence=IEP;RCA] [GO:0009753 "response to jasmonic acid stimulus"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0048574 "long-day photoperiodism, flowering"
evidence=IGI;RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA;IMP] [GO:0043433 "negative regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] [GO:0007623 "circadian rhythm"
evidence=IGI;RCA] [GO:0009409 "response to cold" evidence=IGI]
[GO:0042754 "negative regulation of circadian rhythm" evidence=IMP]
[GO:0009639 "response to red or far red light" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0005634
GO:GO:0046686 GO:GO:0009733 GO:GO:0009753 GO:GO:0009723
GO:GO:0007623 GO:GO:0009651 GO:GO:0009409 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0009751 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0044212 GO:GO:0009739 GO:GO:0043433
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 GO:GO:0048574 HOGENOM:HOG000084594 GO:GO:0042754
EMBL:AC007323 EMBL:AJ006404 EMBL:AY519507 EMBL:AK316728
EMBL:AK316829 IPI:IPI00517620 RefSeq:NP_001030924.1
RefSeq:NP_171614.1 RefSeq:NP_849568.1 UniGene:At.25466
ProteinModelPortal:Q6R0H1 SMR:Q6R0H1 IntAct:Q6R0H1 STRING:Q6R0H1
PRIDE:Q6R0H1 EnsemblPlants:AT1G01060.1 EnsemblPlants:AT1G01060.2
EnsemblPlants:AT1G01060.3 GeneID:839341 KEGG:ath:AT1G01060
GeneFarm:1653 TAIR:At1g01060 eggNOG:NOG269073 InParanoid:Q6R0H1
KO:K12133 OMA:QKFFTKL PhylomeDB:Q6R0H1 ProtClustDB:CLSN2682827
Uniprot:Q6R0H1
Length = 645
Score = 470 (170.5 bits), Expect = 7.4e-103, Sum P(3) = 7.4e-103
Identities = 139/395 (35%), Positives = 193/395 (48%)
Query: 266 KRDDVADALPTAEVQATQNYPRHVNVHILDGSLGTGTQS-PSDMPMQESIFHPIGE-VHG 323
K++ D V + QNYP H + I++G++ Q+ PS M Q+ +FHP+ E HG
Sbjct: 199 KKNKDKDGNDGTTVHSMQNYPWHFHADIVNGNIAKCPQNHPSGMVSQDFMFHPMREETHG 258
Query: 324 NPNLFTNPAASATTENESNVPKSTHQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIV 383
+ NL A++ TT ++HQ+FP H QDDYRSFL ISS FS+LI+
Sbjct: 259 HANLQATTASATTT--------ASHQAFPACH--------SQDDYRSFLQISSTFSNLIM 302
Query: 384 STLLQNPXXXXXXXXXXTFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMXXXXXXXXXX 443
STLLQNP + WPY ++ S DS T P SSPPS+
Sbjct: 303 STLLQNPAAHAAATFAASVWPYASVGNSGDSST-PMS-------SSPPSITAIAAATVAA 354
Query: 444 XXXXXXXHGLLPLCAPFHAPFICPPACATAVSSMDTAQVPA-AKTDKNDNTPP----NPA 498
HGLLP+CAP AP C P AV + PA + D +NT P N A
Sbjct: 355 ATAWWASHGLLPVCAP--APITCVPFSTVAVPT------PAMTEMDTVENTQPFEKQNTA 406
Query: 499 LKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNS-EENELHD 557
L+D Q S A + +S +T L +DS+ + ++ + A H+ N+ ++ L D
Sbjct: 407 LQD-QNLASKSPASSSDDSDETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVD 465
Query: 558 SNKTKNRKQVDRSSCGSNTPSSSEVETDALXXXXXXXXXXXXIDPSLPATDPGNRRSRSS 617
+ + S + T + ++E D I+ L R + S+
Sbjct: 466 RSSCGSNTP---SGSDAETDALDKMEKDKEDVKETDENQPDVIE--LNNRKIKMRDNNSN 520
Query: 618 SNIT-DSWKEVSEVGRLAFQALFSREVLPQSFSPP 651
+N T DSWKEVSE GR+AFQALF+RE LPQSFSPP
Sbjct: 521 NNATTDSWKEVSEEGRIAFQALFARERLPQSFSPP 555
Score = 448 (162.8 bits), Expect = 7.4e-103, Sum P(3) = 7.4e-103
Identities = 105/193 (54%), Positives = 126/193 (65%)
Query: 1 MDTYSSGEDLVLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQ 60
MDT +SGE+L+ K RKPYTITKQRERWTE+EH RFLEAL+LYGRAWQRIEEHIGTK AVQ
Sbjct: 1 MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQ 60
Query: 61 IRSHAQKFFSKLEKEALSKGVPIGQAIDIDIXXXXXXXXXXXXXXXXTCTNAPMS-QIG- 118
IRSHAQKFF+KLEKEA KG+P+ QA+DI+I N S Q+
Sbjct: 61 IRSHAQKFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRKPGNNGTSSSQVSS 120
Query: 119 AKDGKLRSSVSSLRCNQV-LDLEKEPICDRPNGDEKPTYTIESQKDNCSEVFILHQEAHC 177
AKD KL SS SS + NQ LDLEK P ++ + + K+N Q+ +C
Sbjct: 121 AKDAKLVSSASSSQLNQAFLDLEKMPFSEKTS----------TGKEN--------QDENC 162
Query: 178 SSVSSVNKNSMPT 190
S VS+VNK +PT
Sbjct: 163 SGVSTVNKYPLPT 175
Score = 166 (63.5 bits), Expect = 7.4e-103, Sum P(3) = 7.4e-103
Identities = 34/59 (57%), Positives = 47/59 (79%)
Query: 709 EGLLTIGLGHGK-LKARRTGFKPYKRCSVEAKENRILNTGNQAEEKCPKRIRVEG-ATT 765
EG++ IG+G K LK R+TGFKPYKRCS+E KE+++ N NQ++EK KR+R+EG A+T
Sbjct: 587 EGVVMIGVGTCKSLKTRQTGFKPYKRCSMEVKESQVGNINNQSDEKVCKRLRLEGEAST 645
>TAIR|locus:2044345 [details] [associations]
symbol:CCA1 "circadian clock associated 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IEP;RCA] [GO:0009723
"response to ethylene stimulus" evidence=IEP;RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP;RCA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP;RCA] [GO:0009739
"response to gibberellin stimulus" evidence=IEP;RCA] [GO:0009751
"response to salicylic acid stimulus" evidence=IEP;RCA] [GO:0009753
"response to jasmonic acid stimulus" evidence=IEP;RCA] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0010243 "response to
organic nitrogen" evidence=IEP] [GO:0048574 "long-day
photoperiodism, flowering" evidence=IGI;RCA] [GO:0007623 "circadian
rhythm" evidence=IEP;IGI;RCA;IMP;TAS] [GO:0019904 "protein domain
specific binding" evidence=ISS] [GO:0043496 "regulation of protein
homodimerization activity" evidence=IMP] [GO:0009409 "response to
cold" evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0042754 "negative regulation of circadian rhythm"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0009639 "response to red or far
red light" evidence=RCA] [GO:0010264 "myo-inositol hexakisphosphate
biosynthetic process" evidence=RCA] [GO:0042752 "regulation of
circadian rhythm" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 SMART:SM00717 GO:GO:0009737
GO:GO:0005634 GO:GO:0046686 GO:GO:0045892 GO:GO:0045893
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733 GO:GO:0009753
GO:GO:0009723 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0043565 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0009751 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009739
GO:GO:0010243 GO:GO:0043496 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC005310 GO:GO:0048574
EMBL:U28422 EMBL:U79156 EMBL:AY519511 EMBL:BT001096 EMBL:BT001105
IPI:IPI00522826 IPI:IPI00545715 PIR:T02684 RefSeq:NP_850460.1
RefSeq:NP_850461.1 UniGene:At.10956 ProteinModelPortal:P92973
SMR:P92973 IntAct:P92973 STRING:P92973 PRIDE:P92973
EnsemblPlants:AT2G46830.1 GeneID:819296 KEGG:ath:AT2G46830
GeneFarm:1652 TAIR:At2g46830 eggNOG:NOG310744 HOGENOM:HOG000084594
InParanoid:P92973 KO:K12134 OMA:HPEMANE PhylomeDB:P92973
ProtClustDB:CLSN2918288 GO:GO:0042754 Uniprot:P92973
Length = 608
Score = 458 (166.3 bits), Expect = 7.7e-78, Sum P(3) = 7.7e-78
Identities = 113/231 (48%), Positives = 147/231 (63%)
Query: 1 MDTYSSGEDLVLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQ 60
M+T SSGEDLV+KTRKPYTITKQRERWTEEEHNRF+EAL+LYGRAWQ+IEEH+ TK AVQ
Sbjct: 1 METNSSGEDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQ 60
Query: 61 IRSHAQKFFSKLEKEALSKGVPIGQAIDIDIXXXXXXXXXXXXXXXXTCTNAP-MSQIGA 119
IRSHAQKFFSK+EKEA +KGV +GQA+DI I T + MS+ G
Sbjct: 61 IRSHAQKFFSKVEKEAEAKGVAMGQALDIAIPPPRPKRKPNNPYPRKTGSGTILMSKTGV 120
Query: 120 KDGKLRSSVSSLRCNQVLDLEKEPICDRPNGDEKPTYTIESQKDNCSEVFILHQEAHCSS 179
DGK S+ S + + ++ +P +EK T+ Q+DNCS+ F HQ + S+
Sbjct: 121 NDGK--ESLGSEKVSHPEMANEDRQQSKP--EEK---TL--QEDNCSDCFT-HQ--YLSA 168
Query: 180 VSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQDETR-ESYVTVELKANE 229
SS+NK+ + T ++ REF+PS +E + R ES + K+ E
Sbjct: 169 ASSMNKSCIETS----NASTFREFLPSREEGSQNNRVRKESNSDLNAKSLE 215
Score = 293 (108.2 bits), Expect = 7.7e-78, Sum P(3) = 7.7e-78
Identities = 110/341 (32%), Positives = 156/341 (45%)
Query: 428 SSPPSMXXXXXXXXXXXXXXXXXHGLLPLCAPFHAPFICPPACATAVSSMDTAQVPAAKT 487
+SPP++ +GLLPLCAP + +T S D A+
Sbjct: 302 NSPPNLAAMAAATVAAASAWWAANGLLPLCAPLSSGGFTSHPPSTFGPSCDVEYTKAS-- 359
Query: 488 DKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHE 547
T + +++ + E+SEA +A++S L S+ E+ S K HE
Sbjct: 360 -----TLQHGSVQSREQ--EHSEASKARSS-------LDSEDVENKS-------KPVCHE 398
Query: 548 KNSE--ENELHDSNKTKNRKQVDRSSCGSNTPSSSE-VETDALXXXXXXXXXX---XXID 601
+ S E++ S+ +RKQVDRSSCGSNTPSSS+ VE DA D
Sbjct: 399 QPSATPESDAKGSDGAGDRKQVDRSSCGSNTPSSSDDVEADASERQEDGTNGEVKETNED 458
Query: 602 PSLPATDPGN-RRSRSSSNITDSWKEVSEVGRLAFQALFSREVLPQSFSPPHDLKDKMQQ 660
+ P T N RRSR SSNITD WK VS+ GR+AFQALFSREVLPQSF+ + +++ QQ
Sbjct: 459 TNKPQTSESNARRSRISSNITDPWKSVSDEGRIAFQALFSREVLPQSFTYREEHREEEQQ 518
Query: 661 DNVEXXXXXXXXXXXXSLFDLNSKTWGSCFGHQEVEKSTVSGVENNGGEGLLTIGLGHGK 720
+ DLN + QE +++T G G + + G
Sbjct: 519 QQEQRYPMA---------LDLNFTAQLTPVDDQEEKRNT--GFLGIGLDASKLMSRGRTG 567
Query: 721 LKARRTGFKPYKRCSVEAKENRILNTGNQAEEKCPKRIRVE 761
K + K + N I++ E+K PKR+R+E
Sbjct: 568 FKPYKRCSMEAKESRI-LNNNPIIHV----EQKDPKRMRLE 603
Score = 128 (50.1 bits), Expect = 2.2e-54, Sum P(2) = 2.2e-54
Identities = 61/264 (23%), Positives = 105/264 (39%)
Query: 343 VPKSTHQSFPTFHPPFTQFRHDQD---DYRSFLHISSAFSSLIVSTLLQNPXXXXXXXXX 399
VP + + HPP H DY+SF + I+STLLQ P
Sbjct: 233 VPLGSSITSSLSHPPSEPDSHPHTVAGDYQSF-------PNHIMSTLLQTPALYTAATFA 285
Query: 400 XTFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMXXXXXXXXXXXXXXXXXHGLLPLCAP 459
+FWP ++S SP P G +SPP++ +GLLPLCAP
Sbjct: 286 SSFWP---PDSSGGSPV-P--G------NSPPNLAAMAAATVAAASAWWAANGLLPLCAP 333
Query: 460 F-------HAPFICPPACA---TAVSSMDTAQVPAAKTDKNDNTPPNPAL--KD------ 501
H P P+C T S++ V + + + ++ + +L +D
Sbjct: 334 LSSGGFTSHPPSTFGPSCDVEYTKASTLQHGSVQSREQEHSEASKARSSLDSEDVENKSK 393
Query: 502 ---H-QPDLE-YSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSEENELH 556
H QP S+A + + + +S + S+ +E A++ +++ E+
Sbjct: 394 PVCHEQPSATPESDAKGSDGAGDRKQVDRSSCGSNTPSSSDDVEADASERQEDGTNGEVK 453
Query: 557 DSNKTKNRKQVDRSSCGSNTPSSS 580
++N+ N+ Q S+ + SS+
Sbjct: 454 ETNEDTNKPQTSESNARRSRISSN 477
Score = 74 (31.1 bits), Expect = 7.7e-78, Sum P(3) = 7.7e-78
Identities = 29/102 (28%), Positives = 39/102 (38%)
Query: 257 SHEKSVHGEKRDDV-ADALPTAEVQATQNYPRHVNVHILDGSLGTGTQSPSDMPMQESIF 315
S V E D+ A +L Q Q YP H+ V + LG+ S P E
Sbjct: 196 SQNNRVRKESNSDLNAKSLENGNEQGPQTYPMHIPVLV---PLGSSITSSLSHPPSEPDS 252
Query: 316 HPIGEVHGNPNLFTNPAASATTENESNVPKSTHQSFPTFHPP 357
HP V G+ F N S + + +T S +F PP
Sbjct: 253 HP-HTVAGDYQSFPNHIMSTLLQTPALYTAATFAS--SFWPP 291
>TAIR|locus:2014114 [details] [associations]
symbol:EPR1 "EARLY-PHYTOCHROME-RESPONSIVE1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0009651 "response to salt stress" evidence=IEP]
[GO:0009723 "response to ethylene stimulus" evidence=IEP]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=IEP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 SMART:SM00717 EMBL:CP002684
GO:GO:0046686 GO:GO:0009723 GO:GO:0003677 GO:GO:0007623
GO:GO:0009651 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AC013354 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00891668
RefSeq:NP_001117304.1 UniGene:At.27131 ProteinModelPortal:B3H5A8
SMR:B3H5A8 EnsemblPlants:AT1G18330.2 GeneID:838413
KEGG:ath:AT1G18330 TAIR:At1g18330 eggNOG:NOG263004
HOGENOM:HOG000064617 OMA:NSCTSDI PhylomeDB:B3H5A8
ProtClustDB:CLSN2682175 Genevestigator:B3H5A8 Uniprot:B3H5A8
Length = 372
Score = 294 (108.6 bits), Expect = 7.1e-31, Sum P(3) = 7.1e-31
Identities = 57/88 (64%), Positives = 72/88 (81%)
Query: 2 DTYSSGEDLVLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQI 61
+T S + V+K RKPYT+TKQRE+W+EEEH+RFLEA+KLYGR W++I+EHIGTK AVQI
Sbjct: 54 ETSSHWIENVVKVRKPYTVTKQREKWSEEEHDRFLEAIKLYGRGWRQIQEHIGTKTAVQI 113
Query: 62 RSHAQKFFSKLEKEALSKGVPIGQAIDI 89
RSHAQKFFSK+ +EA S+ +AI I
Sbjct: 114 RSHAQKFFSKMAQEADSRSEGSVKAIVI 141
Score = 58 (25.5 bits), Expect = 7.1e-31, Sum P(3) = 7.1e-31
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 726 TGFKPYKRCSVEAKENRILNTGNQAEEKCPKRIRV 760
+GF+PYKRC E + L T ++EK +R R+
Sbjct: 338 SGFRPYKRCLSEREVTSSL-TLVASDEKKSQRARI 371
Score = 43 (20.2 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 508 YSEALQAQNSASKSLTVLTSDSEESASAKL 537
Y L ++ + SLT++ SD ++S A++
Sbjct: 343 YKRCL-SEREVTSSLTLVASDEKKSQRARI 371
Score = 40 (19.1 bits), Expect = 7.1e-31, Sum P(3) = 7.1e-31
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 607 TDPGNRRSRSSSNITDSWKEVSEV 630
T+ +S+ I+ SWK +S +
Sbjct: 303 TEASENLEKSAEPISSSWKRLSSL 326
>TAIR|locus:2169135 [details] [associations]
symbol:RVE2 "REVEILLE 2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA;TAS]
[GO:0009651 "response to salt stress" evidence=IEP;RCA] [GO:0009723
"response to ethylene stimulus" evidence=IEP;RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP;RCA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP;RCA] [GO:0009739
"response to gibberellin stimulus" evidence=IEP;RCA] [GO:0009751
"response to salicylic acid stimulus" evidence=IEP;RCA] [GO:0009753
"response to jasmonic acid stimulus" evidence=IEP;RCA] [GO:0007623
"circadian rhythm" evidence=IEP;RCA] [GO:0009845 "seed germination"
evidence=IMP] [GO:0009909 "regulation of flower development"
evidence=IMP] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
SMART:SM00717 GO:GO:0009737 EMBL:CP002688 GO:GO:0009733
GO:GO:0009753 GO:GO:0009723 GO:GO:0003677 GO:GO:0007623
GO:GO:0009651 GO:GO:0003700 GO:GO:0003682 GO:GO:0009751
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009739 GO:GO:0009845
GO:GO:0009909 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00528444
RefSeq:NP_198542.1 UniGene:At.30502 UniGene:At.68589
ProteinModelPortal:F4K5X6 SMR:F4K5X6 PRIDE:F4K5X6
EnsemblPlants:AT5G37260.1 GeneID:833700 KEGG:ath:AT5G37260
OMA:SSHTEES ArrayExpress:F4K5X6 Uniprot:F4K5X6
Length = 287
Score = 294 (108.6 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 53/71 (74%), Positives = 63/71 (88%)
Query: 5 SSGEDLVLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSH 64
SS + LKTRKPYTITKQRE+WTE EH +F+EALKLYGRAW+RIEEH+GTK AVQIRSH
Sbjct: 17 SSSDAFYLKTRKPYTITKQREKWTEAEHEKFVEALKLYGRAWRRIEEHVGTKTAVQIRSH 76
Query: 65 AQKFFSKLEKE 75
AQKFF+K+ ++
Sbjct: 77 AQKFFTKVARD 87
Score = 67 (28.6 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 33/133 (24%), Positives = 53/133 (39%)
Query: 459 PFHAPFICPPACATAVSSMDTAQVPAAKTDKN-DNTPPNPALKDHQPDLEYSEALQAQNS 517
P+ + P A M A++ +K ++ DN P L H D S + NS
Sbjct: 109 PYPRKLVIPDA-----KEMVYAELTGSKLIQDEDNRSPTSVLSAHGSDGLGSIGSNSPNS 163
Query: 518 ASKSLTVLTSDSEESASAKLKMELK-------ATDHEKNSEENELHDSNKTKNRKQVDRS 570
+S L+ T +S S A+ K LK D+ + ++ D K K +
Sbjct: 164 SSAELSSHTEESL-SLEAETKQSLKLFGKTFVVGDYNSSMSCDDSEDGKK-KLYSETQSL 221
Query: 571 SCGSNTPSSSEVE 583
C S+T ++E E
Sbjct: 222 QCSSSTSENAETE 234
Score = 41 (19.5 bits), Expect = 7.3e-27, Sum P(2) = 7.3e-27
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 150 GDEKPTYTIESQKDNCSEVFILHQEAHCSSVSSVN 184
GD + + + +D +++ Q CSS +S N
Sbjct: 196 GDYNSSMSCDDSEDGKKKLYSETQSLQCSSSTSEN 230
Score = 38 (18.4 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 687 GSCFGHQEVEKSTVSGVENNGGEGLLTIGLGHGKLKARRTGFKPYKRCSVEAKENRIL 744
GS E +S S + +G +GL +IG + + S+EA+ + L
Sbjct: 129 GSKLIQDEDNRSPTSVLSAHGSDGLGSIGSNSPNSSSAELSSHTEESLSLEAETKQSL 186
>TAIR|locus:504955668 [details] [associations]
symbol:AT3G10113 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
EMBL:CP002686 GO:GO:0006355 GO:GO:0003677 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
UniGene:At.27131 IPI:IPI00534114 RefSeq:NP_683543.1
UniGene:At.53244 ProteinModelPortal:F4J2J6 SMR:F4J2J6
EnsemblPlants:AT3G10113.1 GeneID:820173 KEGG:ath:AT3G10113
PhylomeDB:F4J2J6 Uniprot:F4J2J6
Length = 336
Score = 294 (108.6 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 57/88 (64%), Positives = 72/88 (81%)
Query: 2 DTYSSGEDLVLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQI 61
+T S + V+K RKPYT+TKQRE+W+EEEH+RFLEA+KLYGR W++I+EHIGTK AVQI
Sbjct: 43 ETSSHWIENVVKVRKPYTVTKQREKWSEEEHDRFLEAIKLYGRGWRQIQEHIGTKTAVQI 102
Query: 62 RSHAQKFFSKLEKEALSKGVPIGQAIDI 89
RSHAQKFFSK+ +EA S+ +AI I
Sbjct: 103 RSHAQKFFSKMAQEADSRSEGSVKAIVI 130
Score = 59 (25.8 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 41/161 (25%), Positives = 64/161 (39%)
Query: 614 SRSSSNITDS---WKEVSEVGRLAFQA--LFSREVL--PQSFSPPH----DLKDKMQQDN 662
S +N T S +K+ S++G + LF + VL +S P DLK Q+N
Sbjct: 178 SEDQNNYTTSKQPFKDDSDIGSTPISSITLFGKIVLVAEESHKPSSYNDDDLKQMTCQEN 237
Query: 663 VEXXXXXXXXXXXX--SLFDLNSKTWGSCFGHQE-VEKSTVSGVENNGGEGLLTIGLGHG 719
F S +GS E +EKS ++ + L ++
Sbjct: 238 HYSGMLVDTNLSLGVWETFCTGSNAFGSVTEASENLEKSAEP--ISSSWKRLSSLEKQGS 295
Query: 720 KLKARRTGFKPYKRCSVEAKENRILNTGNQAEEKCPKRIRV 760
+GF+PYKRC E + L T ++EK +R R+
Sbjct: 296 CNPVNASGFRPYKRCLSEREVTSSL-TLVASDEKKSQRARI 335
Score = 43 (20.2 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 508 YSEALQAQNSASKSLTVLTSDSEESASAKL 537
Y L ++ + SLT++ SD ++S A++
Sbjct: 307 YKRCL-SEREVTSSLTLVASDEKKSQRARI 335
Score = 40 (19.1 bits), Expect = 9.3e-27, Sum P(2) = 9.3e-27
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 607 TDPGNRRSRSSSNITDSWKEVSEV 630
T+ +S+ I+ SWK +S +
Sbjct: 267 TEASENLEKSAEPISSSWKRLSSL 290
>TAIR|locus:2167210 [details] [associations]
symbol:RVE1 "REVEILLE 1" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;IMP] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA;TAS]
[GO:0007623 "circadian rhythm" evidence=IEP;RCA] [GO:0009734 "auxin
mediated signaling pathway" evidence=IMP] [GO:0009851 "auxin
biosynthetic process" evidence=IMP] [GO:0010600 "regulation of
auxin biosynthetic process" evidence=IMP] [GO:0009651 "response to
salt stress" evidence=RCA] [GO:0009723 "response to ethylene
stimulus" evidence=RCA] [GO:0009733 "response to auxin stimulus"
evidence=RCA] [GO:0009737 "response to abscisic acid stimulus"
evidence=RCA] [GO:0009739 "response to gibberellin stimulus"
evidence=RCA] [GO:0009751 "response to salicylic acid stimulus"
evidence=RCA] [GO:0009753 "response to jasmonic acid stimulus"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
SMART:SM00717 EMBL:CP002688 GO:GO:0009734 GO:GO:0003677
GO:GO:0007623 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009851 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0010600 IPI:IPI00524365
RefSeq:NP_568344.2 UniGene:At.21718 ProteinModelPortal:F4KGY6
SMR:F4KGY6 EnsemblPlants:AT5G17300.1 GeneID:831595
KEGG:ath:AT5G17300 OMA:TKERERW Uniprot:F4KGY6
Length = 387
Score = 296 (109.3 bits), Expect = 5.7e-27, Sum P(2) = 5.7e-27
Identities = 54/75 (72%), Positives = 63/75 (84%)
Query: 2 DTYSSGEDLVLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQI 61
D G D K RKPYTITK+RERWT+EEH +F+EALKLYGRAW+RIEEH+G+K AVQI
Sbjct: 33 DQSFGGNDYAPKVRKPYTITKERERWTDEEHKKFVEALKLYGRAWRRIEEHVGSKTAVQI 92
Query: 62 RSHAQKFFSKLEKEA 76
RSHAQKFFSK+ +EA
Sbjct: 93 RSHAQKFFSKVAREA 107
Score = 40 (19.1 bits), Expect = 5.7e-27, Sum P(2) = 5.7e-27
Identities = 17/76 (22%), Positives = 36/76 (47%)
Query: 509 SEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSEENELHDSNKTKNRKQVD 568
+ +L +SAS + T+ + LK+EL ++ N E+ + + K ++ K
Sbjct: 179 NRSLSPVSSASPPAALTTTANAPEELETLKLELFPSERLLN-RESSIKEPTK-QSLKLFG 236
Query: 569 RSSCGSNTPSSSEVET 584
++ S++ SS + T
Sbjct: 237 KTVLVSDSGMSSSLTT 252
>TAIR|locus:2149589 [details] [associations]
symbol:AT5G52660 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009651 "response to salt stress" evidence=IEP] [GO:0009723
"response to ethylene stimulus" evidence=IEP] [GO:0009737 "response
to abscisic acid stimulus" evidence=IEP] [GO:0009739 "response to
gibberellin stimulus" evidence=IEP] [GO:0009751 "response to
salicylic acid stimulus" evidence=IEP] [GO:0009753 "response to
jasmonic acid stimulus" evidence=IEP] [GO:0046686 "response to
cadmium ion" evidence=IEP] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 SMART:SM00717 GO:GO:0009737 EMBL:CP002688
GO:GO:0046686 GO:GO:0009753 GO:GO:0009723 GO:GO:0003677
GO:GO:0009651 GO:GO:0003700 GO:GO:0003682 GO:GO:0009751
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009739 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237512 eggNOG:NOG279643 EMBL:BT002002 EMBL:AY550303
EMBL:BT025882 IPI:IPI00536078 RefSeq:NP_568776.2 UniGene:At.29606
UniGene:At.67328 ProteinModelPortal:Q8H0W3 SMR:Q8H0W3
EnsemblPlants:AT5G52660.2 GeneID:835343 KEGG:ath:AT5G52660
TAIR:At5g52660 InParanoid:Q8H0W3 OMA:STSEPND PhylomeDB:Q8H0W3
ProtClustDB:CLSN2680521 ArrayExpress:Q8H0W3 Genevestigator:Q8H0W3
Uniprot:Q8H0W3
Length = 331
Score = 247 (92.0 bits), Expect = 8.8e-22, Sum P(2) = 8.8e-22
Identities = 46/78 (58%), Positives = 59/78 (75%)
Query: 5 SSGEDLVLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSH 64
SS EDL K RKPYTITK RE WTE EH++FLEAL+L+ R W++IE IG+K +QIRSH
Sbjct: 53 SSEEDLSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSH 112
Query: 65 AQKFFSKLEKEALSKGVP 82
AQK+F K++K + +P
Sbjct: 113 AQKYFLKVQKSGTGEHLP 130
Score = 41 (19.5 bits), Expect = 8.8e-22, Sum P(2) = 8.8e-22
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 299 GTGTQSPSDMPMQESIFHPIGE-VHGNPNLFTNPAASATTENESNVP 344
GTG P P +++ HP + H N L P + +T +E N P
Sbjct: 124 GTGEHLPPPRPKRKAA-HPYPQKAHKNVQLQV-PGSFKST-SEPNDP 167
>TAIR|locus:2124928 [details] [associations]
symbol:AT4G01280 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009651 "response to salt stress" evidence=IEP;RCA] [GO:0009723
"response to ethylene stimulus" evidence=IEP;RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP;RCA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP;RCA] [GO:0009739
"response to gibberellin stimulus" evidence=IEP;RCA] [GO:0009751
"response to salicylic acid stimulus" evidence=IEP;RCA] [GO:0009753
"response to jasmonic acid stimulus" evidence=IEP;RCA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0000303 "response
to superoxide" evidence=RCA] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA] [GO:0009873 "ethylene mediated
signaling pathway" evidence=RCA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 SMART:SM00717 GO:GO:0009737 GO:GO:0046686
EMBL:CP002687 GO:GO:0009733 GO:GO:0009753 GO:GO:0009723
GO:GO:0003677 GO:GO:0009651 GO:GO:0003700 GO:GO:0003682
GO:GO:0009751 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009739
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000237512 ProtClustDB:CLSN2682863
EMBL:AB493668 IPI:IPI00656826 RefSeq:NP_001031568.1
UniGene:At.44234 ProteinModelPortal:C0SVG5 SMR:C0SVG5
EnsemblPlants:AT4G01280.2 GeneID:827903 KEGG:ath:AT4G01280
TAIR:At4g01280 eggNOG:NOG272389 OMA:KSGANEH PhylomeDB:C0SVG5
Genevestigator:C0SVG5 Uniprot:C0SVG5
Length = 303
Score = 237 (88.5 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 43/80 (53%), Positives = 58/80 (72%)
Query: 3 TYSSGEDLVLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIR 62
T S ED K RKPYTI K RE WT++EH++FLEAL L+ R W++IE +G+K VQIR
Sbjct: 38 TVSFSEDPTTKIRKPYTIKKSRENWTDQEHDKFLEALHLFDRDWKKIEAFVGSKTVVQIR 97
Query: 63 SHAQKFFSKLEKEALSKGVP 82
SHAQK+F K++K ++ +P
Sbjct: 98 SHAQKYFLKVQKSGANEHLP 117
Score = 40 (19.1 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 730 PYKRCSVEAKEN-RILNTGNQAEEKCPKRIRV 760
P RC E E R + N EE C K RV
Sbjct: 204 PNNRCRQEDTERVRAVTKPNN-EESCEKPHRV 234
>TAIR|locus:2075049 [details] [associations]
symbol:RVE8 "REVEILLE 8" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA;TAS]
[GO:0009651 "response to salt stress" evidence=IEP;RCA] [GO:0009723
"response to ethylene stimulus" evidence=IEP;RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP;RCA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP;RCA] [GO:0009739
"response to gibberellin stimulus" evidence=IEP;RCA] [GO:0009751
"response to salicylic acid stimulus" evidence=IEP;RCA] [GO:0009753
"response to jasmonic acid stimulus" evidence=IEP;RCA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0032922 "circadian
regulation of gene expression" evidence=IMP] [GO:0043966 "histone
H3 acetylation" evidence=IMP] [GO:0048573 "photoperiodism,
flowering" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
SMART:SM00717 GO:GO:0009737 GO:GO:0046686 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009733 GO:GO:0009753 GO:GO:0009723
GO:GO:0003677 GO:GO:0009651 GO:GO:0003700 GO:GO:0003682
GO:GO:0009751 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009739
GO:GO:0032922 GO:GO:0048573 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 HOGENOM:HOG000237512
GO:GO:0043966 ProtClustDB:CLSN2689417 EMBL:AY091106 EMBL:AY122969
IPI:IPI00517009 RefSeq:NP_187571.2 UniGene:At.40072
ProteinModelPortal:Q8RWU3 SMR:Q8RWU3 STRING:Q8RWU3 PRIDE:Q8RWU3
EnsemblPlants:AT3G09600.1 GeneID:820117 KEGG:ath:AT3G09600
TAIR:At3g09600 InParanoid:Q8RWU3 OMA:RVISPQH PhylomeDB:Q8RWU3
Genevestigator:Q8RWU3 Uniprot:Q8RWU3
Length = 298
Score = 238 (88.8 bits), Expect = 5.0e-19, P = 5.0e-19
Identities = 42/70 (60%), Positives = 55/70 (78%)
Query: 13 KTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKL 72
K RKPYTITK RE WTEEEH++FLEAL+L+ R W++IE+ +G+K +QIRSHAQK+F K+
Sbjct: 32 KVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKV 91
Query: 73 EKEALSKGVP 82
+K VP
Sbjct: 92 QKNGTLAHVP 101
>TAIR|locus:2025411 [details] [associations]
symbol:ASG4 "ALTERED SEED GERMINATION 4" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:Y12776
EMBL:AC061957 GO:GO:0003677 GO:GO:0009651 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AY519508 EMBL:AJ937211 EMBL:BT029347
IPI:IPI00536561 RefSeq:NP_171659.1 UniGene:At.49839
ProteinModelPortal:Q6R0H0 SMR:Q6R0H0 IntAct:Q6R0H0
EnsemblPlants:AT1G01520.1 GeneID:839337 KEGG:ath:AT1G01520
TAIR:At1g01520 eggNOG:KOG0724 HOGENOM:HOG000237512
InParanoid:Q6R0H0 OMA:SHIMEQG PhylomeDB:Q6R0H0
ProtClustDB:CLSN2682863 Genevestigator:Q6R0H0 Uniprot:Q6R0H0
Length = 287
Score = 237 (88.5 bits), Expect = 6.4e-19, P = 6.4e-19
Identities = 43/80 (53%), Positives = 58/80 (72%)
Query: 3 TYSSGEDLVLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIR 62
T S ED K RKPYTITK RE WTE+EH++FLEAL L+ R W++I+ +G+K +QIR
Sbjct: 40 TMSFFEDPTKKVRKPYTITKSRENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIR 99
Query: 63 SHAQKFFSKLEKEALSKGVP 82
SHAQK+F K++K + +P
Sbjct: 100 SHAQKYFLKVQKNGTKEHLP 119
>TAIR|locus:2151251 [details] [associations]
symbol:LCL1 "LHY/CCA1-like 1" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009651 "response to salt stress" evidence=IEP;RCA] [GO:0009723
"response to ethylene stimulus" evidence=IEP;RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP;RCA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP;RCA] [GO:0009739
"response to gibberellin stimulus" evidence=IEP;RCA] [GO:0009751
"response to salicylic acid stimulus" evidence=IEP;RCA] [GO:0009753
"response to jasmonic acid stimulus" evidence=IEP;RCA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0007623 "circadian
rhythm" evidence=IMP] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
SMART:SM00717 GO:GO:0009737 GO:GO:0005634 EMBL:CP002688
GO:GO:0046686 GO:GO:0009733 GO:GO:0009753 GO:GO:0009723
GO:GO:0003677 GO:GO:0007623 GO:GO:0009651 GO:GO:0003700
GO:GO:0003682 GO:GO:0009751 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009739 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 HOGENOM:HOG000237512
EMBL:AY519514 EMBL:AJ937209 IPI:IPI00528959 RefSeq:NP_568108.1
RefSeq:NP_850756.1 UniGene:At.20108 ProteinModelPortal:Q6R0G4
SMR:Q6R0G4 STRING:Q6R0G4 EnsemblPlants:AT5G02840.1
EnsemblPlants:AT5G02840.2 GeneID:831766 KEGG:ath:AT5G02840
TAIR:At5g02840 eggNOG:NOG319149 InParanoid:Q6R0G4 OMA:AYTITKS
PhylomeDB:Q6R0G4 ProtClustDB:CLSN2689417 Genevestigator:Q6R0G4
Uniprot:Q6R0G4
Length = 293
Score = 229 (85.7 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 3 TYSSGEDLVLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIR 62
T +GE K RK YTITK RE WTE EH++FLEAL+L+ R W++IE+ +G+K +QIR
Sbjct: 27 TTEAGEAPEKKVRKAYTITKSRESWTEGEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIR 86
Query: 63 SHAQKFFSKLEKEALSKGVP 82
SHAQK+F K++K VP
Sbjct: 87 SHAQKYFLKVQKNGTLAHVP 106
>DICTYBASE|DDB_G0288783 [details] [associations]
symbol:mybG "myb domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
SMART:SM00717 dictyBase:DDB_G0288783 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GenomeReviews:CM000154_GR
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
EMBL:AAFI02000125 RefSeq:XP_636518.1 HSSP:Q5VVJ2
ProteinModelPortal:Q54IF9 PRIDE:Q54IF9 EnsemblProtists:DDB0220514
GeneID:8626803 KEGG:ddi:DDB_G0288783 eggNOG:NOG279643 OMA:NNTGERI
Uniprot:Q54IF9
Length = 423
Score = 238 (88.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 41/71 (57%), Positives = 56/71 (78%)
Query: 12 LKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSK 71
LK+RKPYTI+KQRE WT+EEH +FLEAL L+ R W++IE +G+K +QIRSHAQK+F K
Sbjct: 29 LKSRKPYTISKQRENWTDEEHQKFLEALTLFDRDWKKIESFVGSKTVIQIRSHAQKYFIK 88
Query: 72 LEKEALSKGVP 82
++K + +P
Sbjct: 89 VQKNNTGERIP 99
Score = 39 (18.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 480 AQVPAAKTDKNDNTPPNPA 498
A A + +N PPNP+
Sbjct: 179 AVTTAQSSQRNGGLPPNPS 197
>DICTYBASE|DDB_G0277927 [details] [associations]
symbol:mybH "SWIRM domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000555
InterPro:IPR001005 InterPro:IPR007526 InterPro:IPR009057
Pfam:PF00249 Pfam:PF01398 Pfam:PF04433 PROSITE:PS50934
SMART:SM00232 SMART:SM00717 dictyBase:DDB_G0277927 GO:GO:0005634
GO:GO:0006355 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000023 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 eggNOG:NOG329351 HSSP:Q5VVJ2 RefSeq:XP_642011.1
ProteinModelPortal:Q54Z40 MEROPS:M67.A12 EnsemblProtists:DDB0220617
GeneID:8621224 KEGG:ddi:DDB_G0277927 KO:K11865 OMA:PIQQSPI
Uniprot:Q54Z40
Length = 1217
Score = 149 (57.5 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 28/54 (51%), Positives = 38/54 (70%)
Query: 24 RERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEAL 77
R WT+EE F+EA KLY + ++I+EH+ TK +Q+RSHAQKF KLEK +
Sbjct: 150 RSSWTKEEERLFVEAYKLYDKDNKKIQEHVKTKTILQVRSHAQKFALKLEKNGI 203
Score = 110 (43.8 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 27 WTEEEHNRFLEALKLYGRA-WQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75
W+ EEH FL+A++ YGR W+ I I ++ +QI++HA+ +F K+ ++
Sbjct: 232 WSNEEHELFLKAIEKYGRGNWKLISTLIKSRNTLQIKNHARIYFDKISQQ 281
Score = 56 (24.8 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 545 DHEKNSEENELHDSNKTKNRKQVDRSSCGSNTPSSS 580
++ N+ N +++NK KNR + RS S + S S
Sbjct: 1052 NNNNNNNNNNNNNNNKNKNRNEGSRSRSRSRSRSRS 1087
Score = 56 (24.8 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 310 MQESIFHPIGEVHGNPNLFTNPAASATTENESNVPKSTHQSFPT 353
M +S+ + E GN N N A S+T N +N K++ S PT
Sbjct: 697 MDQSLLNTTIEHSGNENDKINMATSSTINNVNN-SKTSSSSSPT 739
Score = 48 (22.0 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 524 VLTSDSEESASAKLKMELKA------TDHEKNSEENELHDSNKTKNRKQVDRSSCGSNTP 577
++ D E K+K + K ++ N+ N +++N N K +R+ GS +
Sbjct: 1020 IIQDDQTELFLTKIKNQFKDFNNNNNNNNNNNNNNNNNNNNNNNNNNKNKNRNE-GSRSR 1078
Query: 578 SSS 580
S S
Sbjct: 1079 SRS 1081
Score = 47 (21.6 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 15/90 (16%), Positives = 35/90 (38%)
Query: 493 TPPNPALKDHQPDLEYSEALQAQNSASKSL-TVLTSDSEESASAKLKMELKATDHEKNSE 551
TP + + P S + N ++S ++ S S + + ++ N+
Sbjct: 442 TPTSISTFPKTPTYTTSNYKSSNNPLNRSFGSINNSSSNNNNNNNNNNNNNNNNNNNNNN 501
Query: 552 ENELHDSNKTKNRKQVDRSSCGSNTPSSSE 581
N +++N N + ++ +N P + E
Sbjct: 502 NNNNNNNNNNNNNNNNNNNNNNNNKPPTKE 531
Score = 44 (20.5 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 25/116 (21%), Positives = 52/116 (44%)
Query: 471 ATAVSSMDTAQVPA-AKT--DK--NDNTPPNP-ALKDHQPDLEYSEALQAQNSASKSLTV 524
+T + S +T Q+ A+ DK N PP+ + + + + Y++ Q N+ +
Sbjct: 256 STLIKSRNTLQIKNHARIYFDKISQQNGPPSKKTIIEVENNNNYND--QNNNNEQNNNNN 313
Query: 525 LTSDSEESASAKLKMELKATDHEKNSEENELHDSNKTKNRKQVDRSSCGSNTPSSS 580
+++ + + D+ NS ++ + NK+ + K D S+ S+ SSS
Sbjct: 314 NNNNNNNNNNNNNNSFFNGNDNGNNSSYSDNGNGNKSTSSKS-DLSNTRSSGSSSS 368
Score = 43 (20.2 bits), Expect = 8.3e-07, Sum P(3) = 8.3e-07
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 326 NLFTNPAASATTENESNVPKSTHQSFPTFHPPFT 359
N T+ ++S T E+ SFP+F P FT
Sbjct: 729 NSKTSSSSSPTNESSKLYNFEDFSSFPSFDP-FT 761
Score = 42 (19.8 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 26/128 (20%), Positives = 56/128 (43%)
Query: 225 LKANEKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVADALPTAEVQATQN 284
LKA EK+G+ + KL S L ++N + + +++ EV+ N
Sbjct: 241 LKAIEKYGRGNWKLISTLIKSRNTLQIKNHARIYFDKI--SQQNGPPSKKTIIEVENNNN 298
Query: 285 Y-PRHVNVHILDGSLGTGTQSPSDMPMQESIFHPIGEVHGNPNLFT-NPAASATTENESN 342
Y ++ N + + + ++ S F+ G +GN + ++ N + +T ++S+
Sbjct: 299 YNDQNNNNEQNNNNNNNNNNNNNNNNNNNSFFN--GNDNGNNSSYSDNGNGNKSTSSKSD 356
Query: 343 VPKSTHQS 350
+ +T S
Sbjct: 357 L-SNTRSS 363
Score = 42 (19.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 19/114 (16%), Positives = 42/114 (36%)
Query: 508 YSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSEENELHDSNKTKNRKQV 567
Y + + QN T++ ++ + + + ++E+N+ N +++N N
Sbjct: 274 YFDKISQQNGPPSKKTIIEVENNNNYNDQ------NNNNEQNNNNNNNNNNNNNNNNNNN 327
Query: 568 DRSSCGSNTPSSSEVETDALXXXXXXXXXXXXIDPSLPATDPGNRRSRSSSNIT 621
+ N +SS + S ++ G+ S SSS I+
Sbjct: 328 SFFNGNDNGNNSSYSDNGNGNKSTSSKSDLSNTRSSGSSSSSGSSSSSSSSTIS 381
Score = 41 (19.5 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 18/77 (23%), Positives = 31/77 (40%)
Query: 502 HQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSEENELHDSNKT 561
+ PDL S + S+S +S S E T++ K+ +N +++N
Sbjct: 1142 NDPDLSDSYMSEVSRSSSDYYNTESSSSMSDIEDDDISEYSDTENYKSFNKN--NNNNNH 1199
Query: 562 KNRKQVDRSSCGSNTPS 578
N +D+ N PS
Sbjct: 1200 YNNNFLDKPVL-QNKPS 1215
Score = 38 (18.4 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 545 DHEKNSEENELHDSNKTKNRKQVDRSSCGSNTPSSS 580
++ KN NE S + RS G+ + S S
Sbjct: 1064 NNNKNKNRNEGSRSRSRSRSRSRSRSRSGTRSRSRS 1099
>DICTYBASE|DDB_G0274463 [details] [associations]
symbol:mybJ "myb domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
dictyBase:DDB_G0274463 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GenomeReviews:CM000151_GR GO:GO:0006351 GO:GO:0003682
EMBL:AAFI02000012 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 RefSeq:XP_644160.1 ProteinModelPortal:Q869R9
EnsemblProtists:DDB0220506 GeneID:8619589 KEGG:ddi:DDB_G0274463
eggNOG:NOG264937 OMA:KGAWKEI Uniprot:Q869R9
Length = 734
Score = 144 (55.7 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 13 KTRKPYTITKQRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFFSK 71
KT T ++ WT+EEH RFL ++++G+ AW+ I + +GT+ QI+SHAQK++ +
Sbjct: 365 KTNPTGKKTSLKQGWTKEEHIRFLNGIQIHGKGAWKEIAQFVGTRTPTQIQSHAQKYYLR 424
Query: 72 LEKEALSK 79
++E +K
Sbjct: 425 QKQETKNK 432
Score = 65 (27.9 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 29/132 (21%), Positives = 54/132 (40%)
Query: 243 NGSSKPLNLENACPSHEKSVHGEKRDDVADALPTAEVQATQNYPRHVNVHILDGSLGTGT 302
+ S P + + PS +S + + V L + +A +V HI L
Sbjct: 519 SSQSSPKSNSPSSPSSPQSFQSSQTEQVVGKLFSPFYRANDGDDSNVR-HIPKSFLNNNN 577
Query: 303 QSPSDMPMQESIFHPIGEVHGNPNLFTNPAASATTENESNVPK--STHQSFPTFHPPFTQ 360
+ ++ + I + G +GN ++ +N S NE N+ + ++HQ P PP
Sbjct: 578 SNNNNSNIN-GINNNNGNGNGNMDMNSNNINSFGN-NEGNILRHQNSHQIPPPPPPPIQH 635
Query: 361 FRHDQDDYRSFL 372
++ D R +L
Sbjct: 636 VQYQMDFQRQYL 647
Score = 41 (19.5 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 698 STVSGVENNGGEG 710
S ++G+ NN G G
Sbjct: 583 SNINGINNNNGNG 595
>DICTYBASE|DDB_G0289151 [details] [associations]
symbol:mybI "myb domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
dictyBase:DDB_G0289151 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GenomeReviews:CM000154_GR
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017930
PROSITE:PS51294 EMBL:AAFI02000130 RefSeq:XP_636387.1
ProteinModelPortal:Q54HX6 EnsemblProtists:DDB0233332 GeneID:8626988
KEGG:ddi:DDB_G0289151 eggNOG:NOG265212 OMA:CKLIKEN Uniprot:Q54HX6
Length = 977
Score = 139 (54.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 22 KQRERWTEEEHNRFLEALKLYG-RAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75
KQ WT EEH+RF+EAL YG + + I +++ T+ Q+R+HAQK+F ++++E
Sbjct: 170 KQSRYWTPEEHSRFIEALSKYGHKDVKSISQYVSTRNPTQVRTHAQKYFLRIDRE 224
Score = 61 (26.5 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 24/159 (15%), Positives = 62/159 (38%)
Query: 490 NDNTPPNPALKDHQPDLEYSEALQAQ---NSASKSLTVLTSDSEESASAKLKMELKATDH 546
N+N P +P L QP + +Q Q N+ +++ +++ + + + ++
Sbjct: 502 NNNGPNSPNLLSSQPQQINQQIIQQQLLNNNNNQNSNQNNNNNNNNNNNNIINN--NNNN 559
Query: 547 EKNSEENELHDSNKTKNRKQVDRSSCGSNTPSSSEVETDALXXXXXXXXXXXXIDPSLPA 606
NS N +++N N + ++ G+N +++ + +
Sbjct: 560 NNNSSNNNSNNNNNINNNNNSNNNNNGNNNSNNNNNNNNNNNNNNNNINNNNNNNNGNNI 619
Query: 607 TDPGNRRSRSSSNITDSWKEVSEVGRLAFQALFSREVLP 645
+ N + SS+ I ++V + Q + +++P
Sbjct: 620 NNNNNNNNNSSNQIIQQQQQVQQQQMQQQQMMMQNQIIP 658
Score = 48 (22.0 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 19/77 (24%), Positives = 33/77 (42%)
Query: 507 EYS-EALQAQ-NSASKSLTVLTSDSEESASAKLKMELKATDHEKNSEENELHDSNKTKNR 564
EY+ E Q +S S S T + + S S + + N+ N +++N N
Sbjct: 249 EYNDEGSPTQYSSCSNSPTTNSVANPFSNSLIISSNNNNNSNSSNNNNNNNNNNNNNNNN 308
Query: 565 KQVD-RSSCGSNTPSSS 580
++ S GSN+ +S
Sbjct: 309 NNININGSSGSNSNVNS 325
Score = 43 (20.2 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 606 ATDPGNRRSRSSSNITDSWKE 626
++D N S +SSN + SW +
Sbjct: 926 SSDENNNSSNNSSNGSGSWHQ 946
Score = 42 (19.8 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 10/88 (11%), Positives = 34/88 (38%)
Query: 493 TPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSEE 552
T P P+ + ++ Q Q ++ + + + + ++ ++
Sbjct: 659 TLPMPSPQSQVLQSQFQPQQQMQQQMQMQYQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 718
Query: 553 NELHDSNKTKNRKQVDRSSCGSNTPSSS 580
+ + + ++Q+ + + SN+ +SS
Sbjct: 719 QQQQQQQQQQQQQQIYQQNLNSNSGNSS 746
Score = 40 (19.1 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 546 HEKNSEENELHDSNKTKNRKQVDRSSCGSNTPSSSEVETDA 586
H N+ N ++SN N + +S GS+ + S++ +
Sbjct: 889 HFNNNSNNNNNNSNNNSNNS--NNNSSGSSGINISDLNNSS 927
Score = 38 (18.4 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 544 TDHEKNSEENELHDSNKTKNRKQ---VDRSSCGSNTPSS 579
T++ N+ N ++S+ N ++ ++ +N P+S
Sbjct: 470 TNNNNNNNNNNNNNSSNINNNNMNNSINNNNINNNGPNS 508
Score = 37 (18.1 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 9/47 (19%), Positives = 24/47 (51%)
Query: 535 AKLKMELKATDHEKNSEENELHDSNKTK-NRKQVDRSSCGSNTPSSS 580
A LK + ++ N+ N ++++N N + ++ +NT +++
Sbjct: 415 AVLKQKDINNNNNNNNNNNNINNNNNNNINNNNSNNNNNNNNTNNNN 461
>ZFIN|ZDB-GENE-041014-28 [details] [associations]
symbol:mysm1 "Myb-like, SWIRM and MPN domains 1"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0004221 "ubiquitin thiolesterase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0016578 "histone
deubiquitination" evidence=ISS] [GO:0004843 "ubiquitin-specific
protease activity" evidence=ISS] [GO:0008237 "metallopeptidase
activity" evidence=IEA;ISS] [GO:0042393 "histone binding"
evidence=ISS] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008233 "peptidase activity" evidence=IEA]
InterPro:IPR000555 InterPro:IPR001005 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF00249 Pfam:PF01398 Pfam:PF04433
PROSITE:PS50934 SMART:SM00232 SMART:SM00717 ZFIN:ZDB-GENE-041014-28
GO:GO:0045893 GO:GO:0046872 GO:GO:0003677 GO:GO:0006508
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0008237 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0003713
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0042393 GO:GO:0016585
GO:GO:0016578 GO:GO:0004843 GO:GO:0004221
GeneTree:ENSGT00530000063766 HSSP:Q5VVJ2 KO:K11865 eggNOG:COG5259
CTD:114803 HOGENOM:HOG000113713 OrthoDB:EOG4ZGPBQ EMBL:BX942841
EMBL:BC134239 IPI:IPI00494402 RefSeq:NP_001157501.1
UniGene:Dr.86682 Ensembl:ENSDART00000044655 GeneID:561225
KEGG:dre:561225 InParanoid:A3KPA5 NextBio:20883824 Bgee:Q5RGA4
Uniprot:Q5RGA4
Length = 822
Score = 116 (45.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 13 KTRKPYTITKQRE-RWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSK 71
K +KP + + RW EEE F + L +GR W +I + IGT+ +Q++S+A+++F
Sbjct: 87 KVKKPLVKSSAAQTRWAEEEKELFEKGLAQFGRRWTKIAKLIGTRTVLQVKSYAKQYFKN 146
Query: 72 LEK 74
K
Sbjct: 147 KPK 149
Score = 63 (27.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 39/162 (24%), Positives = 60/162 (37%)
Query: 229 EKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVADALPTAEVQATQNYPRH 288
+K G +KL Q GS P L C + GE+R + + AE + H
Sbjct: 480 KKKGPRPSKLPKQ-RGSFDPFQLI-PCKTF-----GEERQEPYSVIVCAEALIVMDIHAH 532
Query: 289 VNVHILDGSLGTGTQSPSDMPMQESIFHPIGEVHGNPNLFTNPAASATTENESNVPKST- 347
V++ + G LG GT D ++ P + +P + V +
Sbjct: 533 VSMGEVIGLLG-GTYEEEDKVLKICSAEPCNSLSTGLQCEMDPVSQTQASEVLGVKGLSV 591
Query: 348 ---HQSFPTFHP-PFTQFRHDQDDYRSFLHISSA-FSSLIVS 384
+ S P F P P + Q Y+S+ A F +IVS
Sbjct: 592 VGWYHSHPAFDPNPSLRDIDTQAKYQSYFSRGGAPFIGMIVS 633
>TAIR|locus:2166459 [details] [associations]
symbol:AT5G05790 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB005237
HOGENOM:HOG000237920 ProtClustDB:CLSN2684400 EMBL:AY519531
EMBL:BT026054 IPI:IPI00544524 RefSeq:NP_196198.1 UniGene:At.32952
ProteinModelPortal:Q9FFJ9 SMR:Q9FFJ9 EnsemblPlants:AT5G05790.1
GeneID:830464 KEGG:ath:AT5G05790 TAIR:At5g05790 eggNOG:NOG242423
InParanoid:Q9FFJ9 OMA:ISRNFVG PhylomeDB:Q9FFJ9 ArrayExpress:Q9FFJ9
Genevestigator:Q9FFJ9 Uniprot:Q9FFJ9
Length = 277
Score = 121 (47.7 bits), Expect = 0.00020, P = 0.00020
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 27 WTEEEHNRFLEALKLYGRA-WQRIEEH-IGTKKAVQIRSHAQKFFSKLEKEALSKGVP 82
WTEEEH RFL L YG+ W+ I + +G+K Q+ SHAQK++ + A K P
Sbjct: 133 WTEEEHRRFLLGLLKYGKGDWRNISRNFVGSKTPTQVASHAQKYYQRQLSGAKDKRRP 190
>TAIR|locus:2154508 [details] [associations]
symbol:AT5G58900 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 SMART:SM00717 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB016885
HOGENOM:HOG000237920 EMBL:BT005473 EMBL:AY519533 EMBL:AK118891
IPI:IPI00547099 RefSeq:NP_200698.1 UniGene:At.7757
ProteinModelPortal:Q9FIL9 SMR:Q9FIL9 DNASU:836007
EnsemblPlants:AT5G58900.1 GeneID:836007 KEGG:ath:AT5G58900
TAIR:At5g58900 eggNOG:NOG325121 InParanoid:Q9FIL9 OMA:PFTLDWA
PhylomeDB:Q9FIL9 ProtClustDB:CLSN2914846 ArrayExpress:Q9FIL9
Genevestigator:Q9FIL9 Uniprot:Q9FIL9
Length = 288
Score = 117 (46.2 bits), Expect = 0.00061, P = 0.00061
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 15 RKPYTITKQRERWTEEEHNRFLEALKLYGRA-WQRIEEH-IGTKKAVQIRSHAQKFF 69
R P K+ WTEEEH FL LK YG+ W+ I + + T+ Q+ SHAQK+F
Sbjct: 131 RSPELERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYF 187
>TAIR|locus:2150149 [details] [associations]
symbol:AT5G01200 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AL137189
HOGENOM:HOG000237920 EMBL:AY519530 IPI:IPI00517812 PIR:T45960
RefSeq:NP_195740.1 UniGene:At.27639 ProteinModelPortal:Q9LFB6
SMR:Q9LFB6 EnsemblPlants:AT5G01200.1 GeneID:831676
KEGG:ath:AT5G01200 TAIR:At5g01200 eggNOG:NOG260690
InParanoid:Q9LFB6 OMA:SAANSDY PhylomeDB:Q9LFB6
ProtClustDB:CLSN2916637 ArrayExpress:Q9LFB6 Genevestigator:Q9LFB6
Uniprot:Q9LFB6
Length = 267
Score = 116 (45.9 bits), Expect = 0.00066, P = 0.00066
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 22 KQRER---WTEEEHNRFLEALKLYGRA-WQRI-EEHIGTKKAVQIRSHAQKFF 69
K+R++ WTE+EH RFL LK YG+ W+ I + + T+ Q+ SHAQK+F
Sbjct: 140 KERKKGVPWTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKYF 192
>MGI|MGI:2683486 [details] [associations]
symbol:Rere "arginine glutamic acid dipeptide (RE) repeats"
species:10090 "Mus musculus" [GO:0000118 "histone deacetylase
complex" evidence=IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000679 InterPro:IPR001005
InterPro:IPR001025 InterPro:IPR009057 Pfam:PF00320 Pfam:PF01426
PROSITE:PS00344 PROSITE:PS50114 PROSITE:PS51038 SMART:SM00401
SMART:SM00439 SMART:SM00717 MGI:MGI:2683486 GO:GO:0007275
GO:GO:0005739 GO:GO:0046872 GO:GO:0016605 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR000949 Pfam:PF01448 PROSITE:PS51156 eggNOG:NOG331121
InterPro:IPR002951 Pfam:PF03154 GeneTree:ENSGT00580000081398
HOGENOM:HOG000231091 GO:GO:0000118 KO:K05628 CTD:473
HOVERGEN:HBG079774 OMA:HHPPSAH OrthoDB:EOG4XGZZB ChiTaRS:RERE
EMBL:AL691453 EMBL:AL606982 EMBL:AL606988 EMBL:CU210934
EMBL:CU210933 EMBL:AK122287 IPI:IPI00330272 RefSeq:NP_001078961.1
UniGene:Mm.291274 ProteinModelPortal:Q80TZ9 SMR:Q80TZ9
IntAct:Q80TZ9 STRING:Q80TZ9 PhosphoSite:Q80TZ9 PaxDb:Q80TZ9
PRIDE:Q80TZ9 DNASU:68703 Ensembl:ENSMUST00000105682 GeneID:68703
KEGG:mmu:68703 InParanoid:A2A7T4 NextBio:327726 Bgee:Q80TZ9
CleanEx:MM_RERE Genevestigator:Q80TZ9 Uniprot:Q80TZ9
Length = 1558
Score = 87 (35.7 bits), Expect = 0.00074, Sum P(4) = 0.00074
Identities = 54/242 (22%), Positives = 93/242 (38%)
Query: 125 RSSVSSLRCNQVLDLEKEPICDRPNGDEKP-TYTIESQKDNC-SEVFILHQEAHCSSVS- 181
R S+S+LR + +K+P P+G P I S N S ++ +V
Sbjct: 578 RGSMSTLRSGR----KKQPTS--PDGRASPINEDIRSSGRNSPSAASTSSNDSKAETVKK 631
Query: 182 SVNKNSMPTPVGLRDSCNLREFVPSLKEV---VNQDETRESYVTVELKANEKFGKPDAKL 238
S K L+ + RE V S E + +T+ ++ +E G+
Sbjct: 632 SAKKVKEEAASPLKSTKRQREKVASDTEDTDRITSKKTKTQEISRPNSPSEGEGESSDSR 691
Query: 239 ALQDNGSSKPLNLENACPSHEKSVHGEKRDDVADALPTAEVQATQNYPRHVNVHILDGSL 298
++ D GSS P +++ S S+ + D+ +D+ +A+ Q Q P + G+
Sbjct: 692 SVNDEGSSDPKDIDQDNRSTSPSIPSPQ-DNESDSDSSAQQQMLQAQPPALQAP--SGAA 748
Query: 299 GTGTQSPSDMPMQESIFHPIGEVHGNPNLFTNPAASATTENESNVPKSTH---QSFPTFH 355
+ +P P Q P P + + + +S V + H Q PT H
Sbjct: 749 SAPSTAPPGTP-QLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTLH 807
Query: 356 PP 357
PP
Sbjct: 808 PP 809
Score = 80 (33.2 bits), Expect = 0.00074, Sum P(4) = 0.00074
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 3 TYSSGEDLVLKTRKPYTITKQRER-WTEEEHNRFLEALKLYGRAWQRIEEHI 53
+Y +G+ L +KP + K E+ WTE+E RF++ L+ YG+ + RI + +
Sbjct: 373 SYDAGKALQRLVKKP--VPKLIEKCWTEDEVKRFVKGLRQYGKNFFRIRKEL 422
Score = 62 (26.9 bits), Expect = 0.00074, Sum P(4) = 0.00074
Identities = 31/138 (22%), Positives = 49/138 (35%)
Query: 414 SPTCPQGGFLSRQMSSPPSMXXXXXXXXXXXXXXXXXHGLLPLCAPFHAPFICPPACATA 473
SP P G S+ + P + H +P P P CPP
Sbjct: 992 SPAQPPGLTQSQSLPPPAASHPTTGLHQVPSQSPFPQHPFVPGGPPPITPPSCPPTSTPP 1051
Query: 474 VSSMDTAQVP-AAKTDKNDNTP-----PNPALKDHQPDLEYSEALQAQ----NSASKSLT 523
++Q P +A + P P PA++ + L+ +E ++ S S T
Sbjct: 1052 AGPSSSSQPPCSAAVSSGGSVPGAPSCPLPAVQIKEEALDEAEEPESPPPPPRSPSPEPT 1111
Query: 524 VLTSDSEESASAKLKMEL 541
V+ + S S SA+ L
Sbjct: 1112 VVDTPSHASQSARFYKHL 1129
Score = 38 (18.4 bits), Expect = 0.00074, Sum P(4) = 0.00074
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 600 IDPSLPATDPGNRRSRSSS 618
+DP PAT+P +R S+
Sbjct: 1326 LDPLHPATNPMEHFARHSA 1344
>TAIR|locus:2042872 [details] [associations]
symbol:AT2G38090 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
GO:GO:0005634 EMBL:CP002685 GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT006122 EMBL:AY519529
EMBL:AK118135 IPI:IPI00542058 RefSeq:NP_181344.2 UniGene:At.46819
ProteinModelPortal:Q8GXN7 SMR:Q8GXN7 EnsemblPlants:AT2G38090.1
GeneID:818387 KEGG:ath:AT2G38090 TAIR:At2g38090
HOGENOM:HOG000237920 InParanoid:Q8GXN7 OMA:HRQFLMG PhylomeDB:Q8GXN7
ProtClustDB:CLSN2918198 Genevestigator:Q8GXN7 Uniprot:Q8GXN7
Length = 298
Score = 116 (45.9 bits), Expect = 0.00085, P = 0.00085
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 27 WTEEEHNRFLEALKLYGRA-WQRIEEH-IGTKKAVQIRSHAQKFF 69
WTEEEH +FL LK YG+ W+ I + + T+ Q+ SHAQK+F
Sbjct: 143 WTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKYF 187
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.127 0.368 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 765 698 0.00082 121 3 11 23 0.49 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 620 (66 KB)
Total size of DFA: 370 KB (2182 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 74.78u 0.10s 74.88t Elapsed: 00:00:05
Total cpu time: 74.78u 0.10s 74.88t Elapsed: 00:00:05
Start: Mon May 20 19:28:50 2013 End: Mon May 20 19:28:55 2013