Query 004260
Match_columns 765
No_of_seqs 188 out of 532
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 20:20:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01557 myb_SHAQKYF myb-like 99.5 9.2E-15 2E-19 120.7 5.5 50 22-71 1-56 (57)
2 PF00249 Myb_DNA-binding: Myb- 99.2 2.1E-11 4.5E-16 95.5 6.2 45 24-68 1-47 (48)
3 KOG0724 Zuotin and related mol 98.7 7.7E-10 1.7E-14 115.9 -2.6 101 6-112 34-135 (335)
4 cd00167 SANT 'SWI3, ADA2, N-Co 98.7 2.2E-08 4.7E-13 74.0 5.3 43 26-68 1-44 (45)
5 smart00717 SANT SANT SWI3, AD 98.7 2.2E-08 4.7E-13 74.8 5.1 46 24-69 1-47 (49)
6 PF13921 Myb_DNA-bind_6: Myb-l 98.5 1.7E-07 3.7E-12 75.8 4.8 42 27-68 1-42 (60)
7 COG5259 RSC8 RSC chromatin rem 98.0 6.9E-06 1.5E-10 91.3 5.3 61 10-74 263-325 (531)
8 PLN03212 Transcription repress 97.9 1.6E-05 3.6E-10 82.8 6.6 63 7-69 6-72 (249)
9 PLN03212 Transcription repress 97.9 6.3E-05 1.4E-09 78.5 9.8 51 22-72 76-126 (249)
10 KOG0457 Histone acetyltransfer 97.8 1.7E-05 3.7E-10 87.6 5.4 48 24-71 72-120 (438)
11 KOG1279 Chromatin remodeling f 97.7 4.9E-05 1.1E-09 86.0 6.1 52 20-75 249-300 (506)
12 PLN03091 hypothetical protein; 97.7 4.3E-05 9.3E-10 84.9 5.1 52 19-70 9-62 (459)
13 PLN03091 hypothetical protein; 97.6 0.00019 4.1E-09 80.0 8.6 53 22-74 65-117 (459)
14 PLN03162 golden-2 like transcr 97.2 0.00078 1.7E-08 73.9 7.4 56 21-76 234-294 (526)
15 COG5114 Histone acetyltransfer 97.1 0.0011 2.3E-08 71.8 6.8 48 24-71 63-111 (432)
16 KOG0048 Transcription factor, 96.3 0.0038 8.1E-08 64.1 4.2 47 24-70 9-57 (238)
17 KOG0048 Transcription factor, 96.2 0.011 2.3E-07 60.8 7.0 46 23-68 61-106 (238)
18 KOG0049 Transcription factor, 95.0 0.035 7.5E-07 64.9 5.7 52 22-76 358-410 (939)
19 KOG4329 DNA-binding protein [G 94.9 0.033 7.1E-07 61.6 4.9 51 22-75 275-326 (445)
20 KOG4468 Polycomb-group transcr 94.1 0.069 1.5E-06 62.1 5.3 52 24-75 88-149 (782)
21 COG5118 BDP1 Transcription ini 91.2 0.33 7.1E-06 54.3 5.5 44 21-64 362-405 (507)
22 smart00426 TEA TEA domain. 90.7 0.24 5.1E-06 43.6 3.1 43 24-66 3-66 (68)
23 KOG0049 Transcription factor, 90.6 0.38 8.3E-06 56.7 5.5 46 23-68 411-457 (939)
24 KOG4167 Predicted DNA-binding 90.6 0.44 9.6E-06 56.8 6.1 48 23-73 618-665 (907)
25 KOG0724 Zuotin and related mol 90.3 0.16 3.4E-06 54.1 2.0 55 22-76 162-223 (335)
26 PLN03142 Probable chromatin-re 89.4 0.64 1.4E-05 57.6 6.4 49 25-73 825-874 (1033)
27 KOG0051 RNA polymerase I termi 89.1 0.44 9.4E-06 55.9 4.5 47 22-68 434-506 (607)
28 PF13837 Myb_DNA-bind_4: Myb/S 88.8 0.84 1.8E-05 39.2 5.1 44 24-67 1-62 (90)
29 KOG0051 RNA polymerase I termi 88.4 0.53 1.2E-05 55.2 4.6 52 16-68 375-427 (607)
30 KOG3841 TEF-1 and related tran 88.1 0.87 1.9E-05 51.1 5.8 54 23-76 75-149 (455)
31 KOG0050 mRNA splicing protein 86.0 0.95 2.1E-05 52.4 4.7 54 21-74 4-58 (617)
32 PF01285 TEA: TEA/ATTS domain 83.1 1.2 2.5E-05 50.6 3.9 48 21-68 46-112 (431)
33 PF13873 Myb_DNA-bind_5: Myb/S 81.9 6.2 0.00014 33.6 7.0 51 24-74 2-74 (78)
34 KOG3554 Histone deacetylase co 81.4 1.4 3E-05 50.6 3.7 55 14-71 275-330 (693)
35 KOG1194 Predicted DNA-binding 77.5 4.4 9.5E-05 46.6 5.9 41 24-64 187-227 (534)
36 COG5147 REB1 Myb superfamily p 69.5 3 6.6E-05 48.4 2.4 60 16-75 12-72 (512)
37 PF11035 SnAPC_2_like: Small n 56.8 58 0.0013 36.5 9.0 58 22-79 19-80 (344)
38 PF09111 SLIDE: SLIDE; InterP 53.7 38 0.00082 32.5 6.2 51 17-67 42-108 (118)
39 PF12776 Myb_DNA-bind_3: Myb/S 47.0 78 0.0017 27.6 6.7 42 26-67 1-60 (96)
40 COG0315 MoaC Molybdenum cofact 45.3 17 0.00037 36.8 2.6 27 436-462 55-81 (157)
41 COG5147 REB1 Myb superfamily p 43.5 27 0.0006 40.9 4.3 46 22-67 70-115 (512)
42 KOG2009 Transcription initiati 42.5 15 0.00033 43.5 2.1 42 22-63 407-448 (584)
43 COG4425 Predicted membrane pro 42.1 24 0.00051 41.3 3.5 50 391-451 87-136 (588)
44 KOG1194 Predicted DNA-binding 39.4 49 0.0011 38.6 5.3 55 22-76 367-421 (534)
45 cd01420 MoaC_PE MoaC family, p 36.5 34 0.00073 34.1 3.1 26 436-461 41-66 (140)
46 PRK13923 putative spore coat p 36.1 80 0.0017 32.4 5.7 46 23-68 4-55 (170)
47 PRK12343 putative molybdenum c 35.6 33 0.00071 34.6 2.9 27 436-462 49-75 (151)
48 cd00528 MoaC MoaC family. Memb 34.8 35 0.00077 33.8 3.0 27 436-462 41-67 (136)
49 KOG0050 mRNA splicing protein 34.3 45 0.00097 39.5 4.1 44 23-67 58-101 (617)
50 TIGR00581 moaC molybdenum cofa 34.2 35 0.00075 34.3 2.8 27 436-462 52-78 (147)
51 cd01419 MoaC_A MoaC family, ar 31.3 44 0.00095 33.4 3.0 26 436-461 41-66 (141)
52 KOG0385 Chromatin remodeling c 30.6 83 0.0018 39.1 5.6 56 20-76 791-847 (971)
53 TIGR02894 DNA_bind_RsfA transc 28.4 1.4E+02 0.0031 30.6 6.0 53 23-76 3-62 (161)
54 PRK09364 moaC molybdenum cofac 27.3 54 0.0012 33.3 2.9 25 437-461 56-80 (159)
55 cd08780 Death_TRADD Death Doma 25.6 1.1E+02 0.0024 28.8 4.3 38 28-68 1-42 (90)
56 PF01967 MoaC: MoaC family; I 24.7 46 0.001 32.9 1.9 24 438-461 43-66 (136)
57 PF12451 VPS11_C: Vacuolar pro 24.6 65 0.0014 26.6 2.4 27 28-54 17-43 (49)
58 PLN02375 molybderin biosynthes 23.5 62 0.0014 35.2 2.7 26 436-461 167-192 (270)
59 PF04504 DUF573: Protein of un 21.9 2.1E+02 0.0046 26.5 5.5 33 24-56 4-44 (98)
60 PF06461 DUF1086: Domain of Un 21.4 2.1E+02 0.0047 28.9 5.7 49 26-74 40-91 (145)
61 PF02097 Filo_VP35: Filovirida 21.0 32 0.0007 37.8 0.0 25 431-455 127-151 (321)
No 1
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.53 E-value=9.2e-15 Score=120.67 Aligned_cols=50 Identities=42% Similarity=0.651 Sum_probs=46.0
Q ss_pred cCCCcCCHHHHHHHHHHHHHhCh-hH---HHHHHHh-CCC-CHHHHHhHHHHHHHH
Q 004260 22 KQRERWTEEEHNRFLEALKLYGR-AW---QRIEEHI-GTK-KAVQIRSHAQKFFSK 71 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGr-dW---kkIAe~V-gTR-T~vQVRSHAQKYF~K 71 (765)
+.+.+||+|||.+||+||+.||+ +| ++|++++ .++ |..||+||+||||++
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 45789999999999999999999 99 9999965 478 999999999999986
No 2
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.22 E-value=2.1e-11 Score=95.54 Aligned_cols=45 Identities=42% Similarity=0.786 Sum_probs=41.2
Q ss_pred CCcCCHHHHHHHHHHHHHhChh-HHHHHHHhC-CCCHHHHHhHHHHH
Q 004260 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKKAVQIRSHAQKF 68 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGrd-WkkIAe~Vg-TRT~vQVRSHAQKY 68 (765)
++.||+||+++|++||++||.+ |..|+.+|+ +||..||++|+++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 4689999999999999999996 999999999 99999999999987
No 3
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=7.7e-10 Score=115.92 Aligned_cols=101 Identities=32% Similarity=0.310 Sum_probs=89.5
Q ss_pred cCccccccCCCCcccccCCCc-CCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHHHHHHHHhhcCCCCCC
Q 004260 6 SGEDLVLKTRKPYTITKQRER-WTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIG 84 (765)
Q Consensus 6 ~ge~~v~K~rKPytitk~r~~-WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF~KL~k~~~~kG~~~g 84 (765)
.+++..++++++|.+...+.+ ||.++|..|.++|..|++.|..|-+|++.++.+|+++|+|+||-++.+.. .+
T Consensus 34 ~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~------~~ 107 (335)
T KOG0724|consen 34 WTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQKPFPKYGKSD------TS 107 (335)
T ss_pred hHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccCCCccccCccc------cc
Confidence 466778999999999987654 99999999999999998899999999999999999999999999987753 34
Q ss_pred CcccccCCCCCCCCCCCCCCCCccCCCC
Q 004260 85 QAIDIDIPPPRPKRKPRNPYPRKTCTNA 112 (765)
Q Consensus 85 ~~~di~iPpprpKRKp~~PyPrK~~~g~ 112 (765)
..+.+.+|++++++++.++||++...+.
T Consensus 108 ~~~~~~~~~~~~~~k~~~~y~~~~~~~~ 135 (335)
T KOG0724|consen 108 LAEVEEFYNFWPKFKSWRQYPQKDEPDE 135 (335)
T ss_pred cccccccCCccccccccccCCCCCCccc
Confidence 5567789999999999999999986653
No 4
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.72 E-value=2.2e-08 Score=73.97 Aligned_cols=43 Identities=35% Similarity=0.686 Sum_probs=40.8
Q ss_pred cCCHHHHHHHHHHHHHhC-hhHHHHHHHhCCCCHHHHHhHHHHH
Q 004260 26 RWTEEEHNRFLEALKLYG-RAWQRIEEHIGTKKAVQIRSHAQKF 68 (765)
Q Consensus 26 ~WTeEEHelFLeGLe~YG-rdWkkIAe~VgTRT~vQVRSHAQKY 68 (765)
.||.+|+.+|+.++..|| .+|..|+.++++||..||+.|++++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 599999999999999999 7999999999999999999998765
No 5
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.71 E-value=2.2e-08 Score=74.77 Aligned_cols=46 Identities=30% Similarity=0.653 Sum_probs=42.5
Q ss_pred CCcCCHHHHHHHHHHHHHhC-hhHHHHHHHhCCCCHHHHHhHHHHHH
Q 004260 24 RERWTEEEHNRFLEALKLYG-RAWQRIEEHIGTKKAVQIRSHAQKFF 69 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~YG-rdWkkIAe~VgTRT~vQVRSHAQKYF 69 (765)
+..||.+|..+|+.++..|| .+|..|+.++++||+.||+.++..++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 36799999999999999999 79999999999999999999987654
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.48 E-value=1.7e-07 Score=75.78 Aligned_cols=42 Identities=38% Similarity=0.790 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHH
Q 004260 27 WTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKF 68 (765)
Q Consensus 27 WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKY 68 (765)
||+||.+++++++..||.+|..||.++|+||+.||+.++..+
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~ 42 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNH 42 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997763
No 7
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.98 E-value=6.9e-06 Score=91.33 Aligned_cols=61 Identities=31% Similarity=0.593 Sum_probs=49.6
Q ss_pred ccccCCCCcccccC--CCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHHHHHHH
Q 004260 10 LVLKTRKPYTITKQ--RERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEK 74 (765)
Q Consensus 10 ~v~K~rKPytitk~--r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF~KL~k 74 (765)
.-+.-+++.++.-. ...||.+|..++|+||+.||.+|.+||.||||||+.||.-| |++|.-
T Consensus 263 ~~ssDf~~v~~~~~~~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~----FL~LPi 325 (531)
T COG5259 263 FTSSDFKPVTISLLIRDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILH----FLQLPI 325 (531)
T ss_pred cccccchhhhhhcccccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHH----HHcCCc
Confidence 33445566665543 34899999999999999999999999999999999999998 555533
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.93 E-value=1.6e-05 Score=82.75 Aligned_cols=63 Identities=22% Similarity=0.409 Sum_probs=52.9
Q ss_pred CccccccCCCCccc--ccCCCcCCHHHHHHHHHHHHHhCh-hHHHHHHHhC-CCCHHHHHhHHHHHH
Q 004260 7 GEDLVLKTRKPYTI--TKQRERWTEEEHNRFLEALKLYGR-AWQRIEEHIG-TKKAVQIRSHAQKFF 69 (765)
Q Consensus 7 ge~~v~K~rKPyti--tk~r~~WTeEEHelFLeGLe~YGr-dWkkIAe~Vg-TRT~vQVRSHAQKYF 69 (765)
+.+.+.+.+-|.-. ...+++||.||.+++++++++||. +|+.||.+++ .||..|||-++.+|+
T Consensus 6 ~~~~~~~~~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L 72 (249)
T PLN03212 6 GKKPVSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 72 (249)
T ss_pred CCCCCCCCCCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhh
Confidence 34466666667643 356889999999999999999996 8999999885 899999999988875
No 9
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.88 E-value=6.3e-05 Score=78.53 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=45.9
Q ss_pred cCCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHHHHH
Q 004260 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKL 72 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF~KL 72 (765)
..++.||.||.++.++.+..||..|..||.+|+.||..||+.|+..++.+.
T Consensus 76 I~kgpWT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 76 VKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred cccCCCChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHH
Confidence 467899999999999999999999999999999999999999977655444
No 10
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.85 E-value=1.7e-05 Score=87.57 Aligned_cols=48 Identities=40% Similarity=0.681 Sum_probs=45.3
Q ss_pred CCcCCHHHHHHHHHHHHHhCh-hHHHHHHHhCCCCHHHHHhHHHHHHHH
Q 004260 24 RERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFFSK 71 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGr-dWkkIAe~VgTRT~vQVRSHAQKYF~K 71 (765)
...||.+|..+||+|++.||= +|..||+||||||..+|+.|..|+|+.
T Consensus 72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~ 120 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVN 120 (438)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhc
Confidence 458999999999999999998 999999999999999999998888865
No 11
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=97.70 E-value=4.9e-05 Score=85.95 Aligned_cols=52 Identities=37% Similarity=0.677 Sum_probs=46.3
Q ss_pred cccCCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHHHHHHHH
Q 004260 20 ITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75 (765)
Q Consensus 20 itk~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF~KL~k~ 75 (765)
....+.-||+.|-.++|+||++||-+|.+|+.||||||..||-.| |++|...
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~k----FL~LPie 300 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILK----FLRLPIE 300 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHH----HHhcCcc
Confidence 356678999999999999999999999999999999999999999 6666444
No 12
>PLN03091 hypothetical protein; Provisional
Probab=97.67 E-value=4.3e-05 Score=84.93 Aligned_cols=52 Identities=17% Similarity=0.475 Sum_probs=45.8
Q ss_pred ccccCCCcCCHHHHHHHHHHHHHhCh-hHHHHHHHhC-CCCHHHHHhHHHHHHH
Q 004260 19 TITKQRERWTEEEHNRFLEALKLYGR-AWQRIEEHIG-TKKAVQIRSHAQKFFS 70 (765)
Q Consensus 19 titk~r~~WTeEEHelFLeGLe~YGr-dWkkIAe~Vg-TRT~vQVRSHAQKYF~ 70 (765)
+....+++||.||.++++++|++||. +|..|+.+++ .||..|||-++.+|+.
T Consensus 9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLd 62 (459)
T PLN03091 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLR 62 (459)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccC
Confidence 34456789999999999999999997 8999999886 8999999999887753
No 13
>PLN03091 hypothetical protein; Provisional
Probab=97.59 E-value=0.00019 Score=80.01 Aligned_cols=53 Identities=17% Similarity=0.364 Sum_probs=47.1
Q ss_pred cCCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHHHHHHH
Q 004260 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEK 74 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF~KL~k 74 (765)
..++.||.||.+++|+.++.||..|.+|+.+|+.||..||+.++...+.|..+
T Consensus 65 IkKgpWT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr 117 (459)
T PLN03091 65 LKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLR 117 (459)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999998766555444
No 14
>PLN03162 golden-2 like transcription factor; Provisional
Probab=97.20 E-value=0.00078 Score=73.88 Aligned_cols=56 Identities=34% Similarity=0.399 Sum_probs=47.4
Q ss_pred ccCCCcCCHHHHHHHHHHHHHhCh---hHHHHHHH--hCCCCHHHHHhHHHHHHHHHHHHh
Q 004260 21 TKQRERWTEEEHNRFLEALKLYGR---AWQRIEEH--IGTKKAVQIRSHAQKFFSKLEKEA 76 (765)
Q Consensus 21 tk~r~~WTeEEHelFLeGLe~YGr---dWkkIAe~--VgTRT~vQVRSHAQKYF~KL~k~~ 76 (765)
.|.|-+||.|-|++|++||...|- -=|+|-++ |..=|..+|+||.|||.+.+.+..
T Consensus 234 KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~ 294 (526)
T PLN03162 234 KKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLA 294 (526)
T ss_pred CCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccccc
Confidence 456789999999999999999993 45677775 567899999999999999887554
No 15
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.08 E-value=0.0011 Score=71.85 Aligned_cols=48 Identities=29% Similarity=0.628 Sum_probs=45.0
Q ss_pred CCcCCHHHHHHHHHHHHHhCh-hHHHHHHHhCCCCHHHHHhHHHHHHHH
Q 004260 24 RERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFFSK 71 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGr-dWkkIAe~VgTRT~vQVRSHAQKYF~K 71 (765)
..-|+.+|..+|+++++..|- +|..||.|||+|+...|++|.-||++.
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~e 111 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYDE 111 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHhh
Confidence 458999999999999999998 999999999999999999999888773
No 16
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.31 E-value=0.0038 Score=64.10 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=44.3
Q ss_pred CCcCCHHHHHHHHHHHHHhCh-hHHHHHHHhC-CCCHHHHHhHHHHHHH
Q 004260 24 RERWTEEEHNRFLEALKLYGR-AWQRIEEHIG-TKKAVQIRSHAQKFFS 70 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGr-dWkkIAe~Vg-TRT~vQVRSHAQKYF~ 70 (765)
++.||.||.+++++-|+.||. .|..|+...| -|+-.|||-++-.|+.
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLr 57 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLR 57 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccC
Confidence 799999999999999999998 8999999999 8999999999988854
No 17
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.25 E-value=0.011 Score=60.83 Aligned_cols=46 Identities=17% Similarity=0.442 Sum_probs=43.0
Q ss_pred CCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHH
Q 004260 23 QRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKF 68 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKY 68 (765)
.++.||+||.++.+++-.+||-.|..||.+++.||.-.|+.|+-=.
T Consensus 61 krg~fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~Wnt~ 106 (238)
T KOG0048|consen 61 KRGNFSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHWNTH 106 (238)
T ss_pred cCCCCCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999997443
No 18
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=94.99 E-value=0.035 Score=64.94 Aligned_cols=52 Identities=23% Similarity=0.548 Sum_probs=45.1
Q ss_pred cCCCcCCHHHHHHHHHHHHHhCh-hHHHHHHHhCCCCHHHHHhHHHHHHHHHHHHh
Q 004260 22 KQRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEA 76 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGr-dWkkIAe~VgTRT~vQVRSHAQKYF~KL~k~~ 76 (765)
...++||.+|.-+++.|+.+||- +|-+|-+.|+.|+..|||.+ |...|....
T Consensus 358 ikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~R---Y~nvL~~s~ 410 (939)
T KOG0049|consen 358 VKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRER---YTNVLNRSA 410 (939)
T ss_pred ccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHH---HHHHHHHhh
Confidence 45789999999999999999996 99999999999999999998 555554443
No 19
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=94.88 E-value=0.033 Score=61.62 Aligned_cols=51 Identities=25% Similarity=0.512 Sum_probs=42.7
Q ss_pred cCCCcCCHHHHHHHHHHHHHhChhHHHHHH-HhCCCCHHHHHhHHHHHHHHHHHH
Q 004260 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEE-HIGTKKAVQIRSHAQKFFSKLEKE 75 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrdWkkIAe-~VgTRT~vQVRSHAQKYF~KL~k~ 75 (765)
-.--.|+++|-..|-+||++||+++-.|.. .|.||++-.|--+ ||++....
T Consensus 275 d~l~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVey---YYlWKkSe 326 (445)
T KOG4329|consen 275 DDLSGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEY---YYLWKKSE 326 (445)
T ss_pred cccccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHH---HHHhhcCc
Confidence 344589999999999999999999999987 6999999998666 66665433
No 20
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=94.08 E-value=0.069 Score=62.05 Aligned_cols=52 Identities=21% Similarity=0.537 Sum_probs=41.8
Q ss_pred CCcCCHHHHHHHHHHHHHhChhHHHH----------HHHhCCCCHHHHHhHHHHHHHHHHHH
Q 004260 24 RERWTEEEHNRFLEALKLYGRAWQRI----------EEHIGTKKAVQIRSHAQKFFSKLEKE 75 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGrdWkkI----------Ae~VgTRT~vQVRSHAQKYF~KL~k~ 75 (765)
+..||..|.+-|..||++||+++.+| -.-+-.||.-|||.|+-+-..++.+.
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~ 149 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKL 149 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 67999999999999999999999999 33456789999998865554444443
No 21
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=91.24 E-value=0.33 Score=54.28 Aligned_cols=44 Identities=25% Similarity=0.539 Sum_probs=40.3
Q ss_pred ccCCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhH
Q 004260 21 TKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSH 64 (765)
Q Consensus 21 tk~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSH 64 (765)
.+...+||.+|-++|-+||..+|.++..|+.++++|...||..-
T Consensus 362 ~~~~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaK 405 (507)
T COG5118 362 KKGALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAK 405 (507)
T ss_pred CCCCCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHH
Confidence 34556999999999999999999999999999999999999765
No 22
>smart00426 TEA TEA domain.
Probab=90.65 E-value=0.24 Score=43.59 Aligned_cols=43 Identities=30% Similarity=0.455 Sum_probs=34.4
Q ss_pred CCcCCHHHHHHHHHHHHHhCh-hH---------------HHHHHHhC-----CCCHHHHHhHHH
Q 004260 24 RERWTEEEHNRFLEALKLYGR-AW---------------QRIEEHIG-----TKKAVQIRSHAQ 66 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGr-dW---------------kkIAe~Vg-----TRT~vQVRSHAQ 66 (765)
.+.|.++-...|++||+.|-. .+ ..|++||- .||..||-||-|
T Consensus 3 ~~vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQ 66 (68)
T smart00426 3 EGVWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQ 66 (68)
T ss_pred CCcCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhe
Confidence 468999999999999999874 22 24677653 599999999987
No 23
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=90.57 E-value=0.38 Score=56.74 Aligned_cols=46 Identities=30% Similarity=0.609 Sum_probs=41.0
Q ss_pred CCCcCCHHHHHHHHHHHHHhCh-hHHHHHHHhCCCCHHHHHhHHHHH
Q 004260 23 QRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKF 68 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGr-dWkkIAe~VgTRT~vQVRSHAQKY 68 (765)
..++||-.|.++++.++++||. .|-+||.++|.||-.|.+..-..+
T Consensus 411 K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~ 457 (939)
T KOG0049|consen 411 KVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRL 457 (939)
T ss_pred ccCceeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHH
Confidence 3579999999999999999999 999999999999998887765543
No 24
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=90.56 E-value=0.44 Score=56.75 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=42.8
Q ss_pred CCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHHHHHH
Q 004260 23 QRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLE 73 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF~KL~ 73 (765)
....||..|..+|-+||-.|-+|+.+|+..|.+||+.||- |=||.+..
T Consensus 618 gSd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCV---eyYYtWKK 665 (907)
T KOG4167|consen 618 GSDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCV---EYYYTWKK 665 (907)
T ss_pred CcccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHH---HHHHHHHH
Confidence 4669999999999999999999999999999999999994 44777653
No 25
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=90.26 E-value=0.16 Score=54.11 Aligned_cols=55 Identities=29% Similarity=0.411 Sum_probs=48.7
Q ss_pred cCCCcCCHHHHHHHHHHHHHhCh-hHHHHHH-HhCCCCHHHHHhHHH-----HHHHHHHHHh
Q 004260 22 KQRERWTEEEHNRFLEALKLYGR-AWQRIEE-HIGTKKAVQIRSHAQ-----KFFSKLEKEA 76 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGr-dWkkIAe-~VgTRT~vQVRSHAQ-----KYF~KL~k~~ 76 (765)
+.+..|+..+|.+|+.++..||+ .|..|.+ ++.+|++.|+.+|+| +||.+.....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~s~a~~~~~~~~~~~~~~~~ 223 (335)
T KOG0724|consen 162 RKGTPVTERERKLVLLALKKDGKIDWRKISQNVEKERTPEQVASHAQEKAFEKALARQKSGE 223 (335)
T ss_pred hccchhHHHHHHHHHhhhcccccccceechhhhhhhhcchhhhhhhhhhhhHHHHHHHhhhc
Confidence 45679999999999999999999 9999998 788999999999999 8888874443
No 26
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=89.37 E-value=0.64 Score=57.58 Aligned_cols=49 Identities=22% Similarity=0.525 Sum_probs=45.1
Q ss_pred CcCCHHHHHHHHHHHHHhCh-hHHHHHHHhCCCCHHHHHhHHHHHHHHHH
Q 004260 25 ERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFFSKLE 73 (765)
Q Consensus 25 ~~WTeEEHelFLeGLe~YGr-dWkkIAe~VgTRT~vQVRSHAQKYF~KL~ 73 (765)
.-|+..+-..|+.|..+||| +...||..|+.||+.+|+-+++-|+.+..
T Consensus 825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~ 874 (1033)
T PLN03142 825 STWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYK 874 (1033)
T ss_pred CcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Confidence 37999999999999999999 99999999999999999999998886643
No 27
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=89.12 E-value=0.44 Score=55.87 Aligned_cols=47 Identities=28% Similarity=0.569 Sum_probs=40.6
Q ss_pred cCCCcCCHHHHHHHHHHHH-------Hh-------C------------hhHHHHHHHhCCCCHHHHHhHHHHH
Q 004260 22 KQRERWTEEEHNRFLEALK-------LY-------G------------RAWQRIEEHIGTKKAVQIRSHAQKF 68 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe-------~Y-------G------------rdWkkIAe~VgTRT~vQVRSHAQKY 68 (765)
..+++||-||.+.+|..++ .| | -.|..|++.+|||+.+|||.|++|-
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl 506 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKL 506 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHH
Confidence 3688999999999999996 34 1 1799999999999999999998773
No 28
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=88.84 E-value=0.84 Score=39.20 Aligned_cols=44 Identities=27% Similarity=0.613 Sum_probs=31.1
Q ss_pred CCcCCHHHHHHHHHHHHH------hC--------hhHHHHHHHhC----CCCHHHHHhHHHH
Q 004260 24 RERWTEEEHNRFLEALKL------YG--------RAWQRIEEHIG----TKKAVQIRSHAQK 67 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~------YG--------rdWkkIAe~Vg----TRT~vQVRSHAQK 67 (765)
|..||++|..+||+.+.. |+ .-|+.|++.+. .||+.||+.....
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~ 62 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKN 62 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 457999999999998877 32 16999998643 6999999999765
No 29
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=88.38 E-value=0.53 Score=55.16 Aligned_cols=52 Identities=21% Similarity=0.509 Sum_probs=45.3
Q ss_pred CCccccc-CCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHH
Q 004260 16 KPYTITK-QRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKF 68 (765)
Q Consensus 16 KPytitk-~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKY 68 (765)
+-|++-. ++++||+||.+.+.......|.+|+.|+..+ .|.+.-||.++..|
T Consensus 375 R~y~~FE~~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~ 427 (607)
T KOG0051|consen 375 RAYTPFENKRGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQY 427 (607)
T ss_pred hcCCccccccCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHh
Confidence 3344444 8999999999999999999999999999999 57899999998876
No 30
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=88.12 E-value=0.87 Score=51.05 Aligned_cols=54 Identities=26% Similarity=0.352 Sum_probs=43.3
Q ss_pred CCCcCCHHHHHHHHHHHHHhCh----------------hHHHHHHHhC-----CCCHHHHHhHHHHHHHHHHHHh
Q 004260 23 QRERWTEEEHNRFLEALKLYGR----------------AWQRIEEHIG-----TKKAVQIRSHAQKFFSKLEKEA 76 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGr----------------dWkkIAe~Vg-----TRT~vQVRSHAQKYF~KL~k~~ 76 (765)
..+.|+.+=.+.|+|||..|.. +=..||.||+ |||..||-||-|=+-.+..+.-
T Consensus 75 aegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~rei 149 (455)
T KOG3841|consen 75 AEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREI 149 (455)
T ss_pred cccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999751 2357899875 8999999999997666655543
No 31
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=85.97 E-value=0.95 Score=52.40 Aligned_cols=54 Identities=22% Similarity=0.426 Sum_probs=47.6
Q ss_pred ccCCCcCCHHHHHHHHHHHHHhCh-hHHHHHHHhCCCCHHHHHhHHHHHHHHHHH
Q 004260 21 TKQRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFFSKLEK 74 (765)
Q Consensus 21 tk~r~~WTeEEHelFLeGLe~YGr-dWkkIAe~VgTRT~vQVRSHAQKYF~KL~k 74 (765)
-..++.|+.-|.+-+--|+.+||. .|.+|+..+..+|+.||+..+-+|.....+
T Consensus 4 ~~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~ 58 (617)
T KOG0050|consen 4 EIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIK 58 (617)
T ss_pred EEecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHh
Confidence 346789999999999999999998 899999999999999999998887655443
No 32
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=83.09 E-value=1.2 Score=50.58 Aligned_cols=48 Identities=27% Similarity=0.407 Sum_probs=32.3
Q ss_pred ccCCCcCCHHHHHHHHHHHHHhCh----hH----------HHHHHHhC-----CCCHHHHHhHHHHH
Q 004260 21 TKQRERWTEEEHNRFLEALKLYGR----AW----------QRIEEHIG-----TKKAVQIRSHAQKF 68 (765)
Q Consensus 21 tk~r~~WTeEEHelFLeGLe~YGr----dW----------kkIAe~Vg-----TRT~vQVRSHAQKY 68 (765)
....+.|+++=+..|++||+.|.. .| ..|++||. +||..||.||.|-.
T Consensus 46 ~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 46 GDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 356789999999999999999863 22 35788764 69999999999953
No 33
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=81.86 E-value=6.2 Score=33.61 Aligned_cols=51 Identities=25% Similarity=0.475 Sum_probs=41.1
Q ss_pred CCcCCHHHHHHHHHHHHHhC-----------------hhHHHHHHHh-----CCCCHHHHHhHHHHHHHHHHH
Q 004260 24 RERWTEEEHNRFLEALKLYG-----------------RAWQRIEEHI-----GTKKAVQIRSHAQKFFSKLEK 74 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~YG-----------------rdWkkIAe~V-----gTRT~vQVRSHAQKYF~KL~k 74 (765)
...||.+|...+|+.|+.|- +.|..|+..+ +.||..|++-.++.+-..+.+
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk 74 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK 74 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35799999999999999973 2899999843 379999999998886555544
No 34
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=81.45 E-value=1.4 Score=50.60 Aligned_cols=55 Identities=25% Similarity=0.452 Sum_probs=41.9
Q ss_pred CCCCcccccCCCcCCHHHHHHHHHHHHHhChhHHHHHH-HhCCCCHHHHHhHHHHHHHH
Q 004260 14 TRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEE-HIGTKKAVQIRSHAQKFFSK 71 (765)
Q Consensus 14 ~rKPytitk~r~~WTeEEHelFLeGLe~YGrdWkkIAe-~VgTRT~vQVRSHAQKYF~K 71 (765)
...|..-.-+.+-|+.-|-.+|.+||++||+++..|-. |++=|+..-| .+=||+.
T Consensus 275 lGGPvLCRDemEEWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sI---veyYYmw 330 (693)
T KOG3554|consen 275 LGGPVLCRDEMEEWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSI---VEYYYMW 330 (693)
T ss_pred CCCceeehhhhhhccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHH---HHHHHHH
Confidence 34455545566799999999999999999999999965 8888876655 3335554
No 35
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=77.52 E-value=4.4 Score=46.63 Aligned_cols=41 Identities=17% Similarity=0.496 Sum_probs=37.2
Q ss_pred CCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhH
Q 004260 24 RERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSH 64 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSH 64 (765)
...||.||.-+|-.++..||+++.+|...++-|+..-++-+
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqy 227 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQY 227 (534)
T ss_pred cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHH
Confidence 46899999999999999999999999999999998776544
No 36
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=69.47 E-value=3 Score=48.40 Aligned_cols=60 Identities=13% Similarity=0.269 Sum_probs=50.2
Q ss_pred CCcccccCCCcCCHHHHHHHHHHHHHhCh-hHHHHHHHhCCCCHHHHHhHHHHHHHHHHHH
Q 004260 16 KPYTITKQRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75 (765)
Q Consensus 16 KPytitk~r~~WTeEEHelFLeGLe~YGr-dWkkIAe~VgTRT~vQVRSHAQKYF~KL~k~ 75 (765)
+++......+.|+..|.+..+-+++.||. .|-+||..++.+|..||+.|+-.|...+.+.
T Consensus 12 ~~~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~ 72 (512)
T COG5147 12 KLMQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKK 72 (512)
T ss_pred ccccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhccc
Confidence 33555566779999999999999999998 9999999888899999999997776665544
No 37
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=56.76 E-value=58 Score=36.48 Aligned_cols=58 Identities=19% Similarity=0.412 Sum_probs=48.0
Q ss_pred cCCCcCCHHHHHHHHHHHHHh-Ch---hHHHHHHHhCCCCHHHHHhHHHHHHHHHHHHhhcC
Q 004260 22 KQRERWTEEEHNRFLEALKLY-GR---AWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEALSK 79 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~Y-Gr---dWkkIAe~VgTRT~vQVRSHAQKYF~KL~k~~~~k 79 (765)
.....||..|...+|.+|+.- |. +-..|+..|..|+..+|+...|+.-.++.++.+.+
T Consensus 19 ~gp~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~rvareaiqk 80 (344)
T PF11035_consen 19 TGPAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGRVAREAIQK 80 (344)
T ss_pred CCcccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345699999999999999875 54 55567778999999999999998888888887654
No 38
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=53.68 E-value=38 Score=32.55 Aligned_cols=51 Identities=20% Similarity=0.481 Sum_probs=39.3
Q ss_pred CcccccCCCcCCHHHHHHHHHHHHHhCh----hHHHHHH------------HhCCCCHHHHHhHHHH
Q 004260 17 PYTITKQRERWTEEEHNRFLEALKLYGR----AWQRIEE------------HIGTKKAVQIRSHAQK 67 (765)
Q Consensus 17 Pytitk~r~~WTeEEHelFLeGLe~YGr----dWkkIAe------------~VgTRT~vQVRSHAQK 67 (765)
+|.....+..||++|..-.|-.|-+||- .|..|-. |+.|||+..|.=++.-
T Consensus 42 ~y~~~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~t 108 (118)
T PF09111_consen 42 NYPPNNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNT 108 (118)
T ss_dssp SSTSTSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHH
T ss_pred ccCCCCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHH
Confidence 3555667789999999999999999997 8998854 4569999999888773
No 39
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=46.97 E-value=78 Score=27.56 Aligned_cols=42 Identities=24% Similarity=0.442 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHHHHh--------C-----hhHHHHHHHh----C-CCCHHHHHhHHHH
Q 004260 26 RWTEEEHNRFLEALKLY--------G-----RAWQRIEEHI----G-TKKAVQIRSHAQK 67 (765)
Q Consensus 26 ~WTeEEHelFLeGLe~Y--------G-----rdWkkIAe~V----g-TRT~vQVRSHAQK 67 (765)
.||+++.+.||+.|... + ..|..|+..+ | ..|..||.+|...
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~ 60 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT 60 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 59999999999999654 1 1799998732 3 4688999999664
No 40
>COG0315 MoaC Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=45.26 E-value=17 Score=36.78 Aligned_cols=27 Identities=33% Similarity=0.535 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCCCCCC
Q 004260 436 IAAATVAAATAWWAAHGLLPLCAPFHA 462 (765)
Q Consensus 436 iaaATVAAAtAWWAahGLLPlcaPl~~ 462 (765)
|++|=+|+..|==-+.-|||||-||+.
T Consensus 55 l~tAriAgimaaKkT~elIPlCHpi~l 81 (157)
T COG0315 55 LATARIAGIMAAKRTSELIPLCHPLPL 81 (157)
T ss_pred HHHHHHHHHHHhhhhhhhCccCCCCcc
Confidence 566666666666677799999999763
No 41
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=43.47 E-value=27 Score=40.90 Aligned_cols=46 Identities=22% Similarity=0.432 Sum_probs=40.6
Q ss_pred cCCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHH
Q 004260 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQK 67 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQK 67 (765)
.....|+.||.+..+..-..+|-.|..|+.+++.||..||--..+.
T Consensus 70 lk~~~~~~eed~~li~l~~~~~~~wstia~~~d~rt~~~~~ery~~ 115 (512)
T COG5147 70 LKKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVN 115 (512)
T ss_pred cccccccHHHHHHHHHHHHhcCchhhhhccccCccchHHHHHHHHH
Confidence 3567899999999999999999999999999999999999555443
No 42
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=42.53 E-value=15 Score=43.53 Aligned_cols=42 Identities=21% Similarity=0.412 Sum_probs=38.9
Q ss_pred cCCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHh
Q 004260 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRS 63 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRS 63 (765)
....+|+.+|-++|-.+|..+|-+...|+...+.|+..||+-
T Consensus 407 ~~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~ 448 (584)
T KOG2009|consen 407 LETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKA 448 (584)
T ss_pred cccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHH
Confidence 345799999999999999999999999999999999999974
No 43
>COG4425 Predicted membrane protein [Function unknown]
Probab=42.14 E-value=24 Score=41.25 Aligned_cols=50 Identities=30% Similarity=0.314 Sum_probs=37.3
Q ss_pred HHHHHHhhhhccCCCCCCCcCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHc
Q 004260 391 AAHAAASFAATFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMAAIAAATVAAATAWWAAH 451 (765)
Q Consensus 391 AahaAA~fAasfWp~an~e~s~~s~~~~~~~~~~r~~~s~PSmaaiaaATVAAAtAWWAah 451 (765)
+-|+|+.|+-..|+|-+...+..-+ .| ..=-.+|||+|.+|++++|||+|
T Consensus 87 ~Gy~~gv~~~wl~~y~elp~~s~~~--------~R---~~~~~~ai~~~~~a~~fl~qa~~ 136 (588)
T COG4425 87 AGYGAGVFLHWLWRYLELPESSPRP--------PR---WAKPAAAIVGAAGAVGFLVQAAV 136 (588)
T ss_pred hhhHHHHHHHHHHHHhhCCCCCCCC--------cc---hhhhHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999885533221 11 12236889999999999999997
No 44
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=39.41 E-value=49 Score=38.61 Aligned_cols=55 Identities=7% Similarity=0.007 Sum_probs=47.7
Q ss_pred cCCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHHHHHHHHh
Q 004260 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEA 76 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF~KL~k~~ 76 (765)
+...+||.++..+.+.+|++||++...|.-.||.++..|+.--.-.|-.+..-..
T Consensus 367 ~~n~~~~T~~~la~v~~I~~~~~~~~pl~wrik~t~cmee~e~l~~~~Rr~mfea 421 (534)
T KOG1194|consen 367 RMNRCFDTPAALALIDNIKRKHHMCVPLVWRVKQTKCMEENEILNEEARRQMFEA 421 (534)
T ss_pred hhccccCcHHHHHHHHHHHHhccCcchhhhHhcCcchhhHHHHHHHHHHHHHHHH
Confidence 4457999999999999999999999999999999999999888777766655443
No 45
>cd01420 MoaC_PE MoaC family, prokaryotic and eukaryotic. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=36.54 E-value=34 Score=34.11 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCCCCC
Q 004260 436 IAAATVAAATAWWAAHGLLPLCAPFH 461 (765)
Q Consensus 436 iaaATVAAAtAWWAahGLLPlcaPl~ 461 (765)
++.|-+|+..|==-+.-|||||-||+
T Consensus 41 l~vAriAgI~aaK~T~~LIPlCHpi~ 66 (140)
T cd01420 41 LAVARIAGIMAAKRTSELIPLCHPLP 66 (140)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCCc
Confidence 45555566666566679999999965
No 46
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=36.05 E-value=80 Score=32.45 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=34.9
Q ss_pred CCCcCCHHHHHHHHHHHHHhCh-hHHHHHHH--hC---CCCHHHHHhHHHHH
Q 004260 23 QRERWTEEEHNRFLEALKLYGR-AWQRIEEH--IG---TKKAVQIRSHAQKF 68 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGr-dWkkIAe~--Vg---TRT~vQVRSHAQKY 68 (765)
....||.|+..++-+.+-.|++ +=.+++.| || .||+.+|..++--|
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~ 55 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNSV 55 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHH
Confidence 4578999999999999999987 44444432 22 79999999998443
No 47
>PRK12343 putative molybdenum cofactor biosynthesis protein MoaC; Reviewed
Probab=35.58 E-value=33 Score=34.60 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCCCCCC
Q 004260 436 IAAATVAAATAWWAAHGLLPLCAPFHA 462 (765)
Q Consensus 436 iaaATVAAAtAWWAahGLLPlcaPl~~ 462 (765)
+++|-+|+-.|==-+.-|||||-||+.
T Consensus 49 l~~AriAgi~aAK~T~~LIPlCHPl~l 75 (151)
T PRK12343 49 LATARVAGILAVKKTPELIPMCHPIPI 75 (151)
T ss_pred HHHHHHHHHHHHHhhhhhccCCCCccc
Confidence 344444444444455689999999654
No 48
>cd00528 MoaC MoaC family. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=34.80 E-value=35 Score=33.81 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCCCCCC
Q 004260 436 IAAATVAAATAWWAAHGLLPLCAPFHA 462 (765)
Q Consensus 436 iaaATVAAAtAWWAahGLLPlcaPl~~ 462 (765)
++.|-+|+-.|==-+.-|||||-||+.
T Consensus 41 l~~AriAgI~aaK~T~~LIPlCHpl~l 67 (136)
T cd00528 41 LAVARIAGIMAAKRTSELIPLCHPLPL 67 (136)
T ss_pred HHHHHHHHHHHHHhcccccccCCCCcc
Confidence 455566666666667799999999753
No 49
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=34.27 E-value=45 Score=39.46 Aligned_cols=44 Identities=23% Similarity=0.483 Sum_probs=38.7
Q ss_pred CCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHH
Q 004260 23 QRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQK 67 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQK 67 (765)
...-|+.||.+++|.+.+++...|.-|+..| -||..||--+.++
T Consensus 58 ~~tews~eederlLhlakl~p~qwrtIa~i~-gr~~~qc~eRy~~ 101 (617)
T KOG0050|consen 58 KKTEWSREEDERLLHLAKLEPTQWRTIADIM-GRTSQQCLERYNN 101 (617)
T ss_pred hhhhhhhhHHHHHHHHHHhcCCccchHHHHh-hhhHHHHHHHHHH
Confidence 3568999999999999999999999999998 4999999776554
No 50
>TIGR00581 moaC molybdenum cofactor biosynthesis protein MoaC. MoaC catalyzes an early step in molybdenum cofactor biosynthesis in E. coli. The Arabidopsis homolog Cnx3 complements MoaC deficiency in E. coli (MUID:95197640). Eukarotic members of this family branch within the bacterial branch, with the archaeal members as an apparent outgroup. This protein is absent in a number of the pathogens with smaller genomes, including Mycoplasmas, Chlamydias, and spirochetes, but is found in most other complete genomes to date. The homolog form Synechocystis sp. is fused to a MobA-homologous region and is an outlier to all other bacterial forms by both neighbor-joining and UPGMA analyses. Members of this family are well-conserved. The seed for this model excludes both archaeal sequences and the most divergent bacterial sequences, but still finds all candidate MoaC sequences easily between trusted and noise cutoffs. We suggest that sequences branching outside the set that contains all seed members
Probab=34.15 E-value=35 Score=34.25 Aligned_cols=27 Identities=37% Similarity=0.546 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCCCCCC
Q 004260 436 IAAATVAAATAWWAAHGLLPLCAPFHA 462 (765)
Q Consensus 436 iaaATVAAAtAWWAahGLLPlcaPl~~ 462 (765)
++.|-||+-.|==-+.-|||||-||+.
T Consensus 52 l~~AriAgi~aaK~T~~lIPlCHpi~l 78 (147)
T TIGR00581 52 IATARIAGIMAAKRTGDLIPLCHPLPL 78 (147)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCCCccc
Confidence 344444444444455689999999753
No 51
>cd01419 MoaC_A MoaC family, archaeal. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=31.34 E-value=44 Score=33.42 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCCCCC
Q 004260 436 IAAATVAAATAWWAAHGLLPLCAPFH 461 (765)
Q Consensus 436 iaaATVAAAtAWWAahGLLPlcaPl~ 461 (765)
++.|-+|+-.|==-+.-|||||-||+
T Consensus 41 L~vAriAgI~aaK~T~~LIPlCHpl~ 66 (141)
T cd01419 41 IATARIAGILAVKKTPELIPMCHPIP 66 (141)
T ss_pred HHHHHHHHHHHHHhhhhhccCCCCcc
Confidence 44555555555556668999999965
No 52
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=30.55 E-value=83 Score=39.15 Aligned_cols=56 Identities=23% Similarity=0.508 Sum_probs=48.4
Q ss_pred cccCCCcCCHHHHHHHHHHHHHhCh-hHHHHHHHhCCCCHHHHHhHHHHHHHHHHHHh
Q 004260 20 ITKQRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEA 76 (765)
Q Consensus 20 itk~r~~WTeEEHelFLeGLe~YGr-dWkkIAe~VgTRT~vQVRSHAQKYF~KL~k~~ 76 (765)
.+..-..||..+-..|+.|-++||| +-..|+.-|-. |+.-|..+|.-||-++.+..
T Consensus 791 l~~gft~w~k~df~~fi~a~eKygr~di~~ia~~~e~-~~eev~~y~rvfwer~~el~ 847 (971)
T KOG0385|consen 791 LSQGFTNWTKRDFNQFIKANEKYGRDDIENIAAEVEG-TPEEVGEYARVFWERLEELS 847 (971)
T ss_pred hhccccchhhhhHHHHHHHhhccCcchhhhhHHhhcC-CHHHHHHHHHHHHHHHHHhh
Confidence 3444567999999999999999999 89999997755 99999999999999988765
No 53
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.38 E-value=1.4e+02 Score=30.57 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=40.5
Q ss_pred CCCcCCHHHHHHHHHHHHHhCh-------hHHHHHHHhCCCCHHHHHhHHHHHHHHHHHHh
Q 004260 23 QRERWTEEEHNRFLEALKLYGR-------AWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEA 76 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGr-------dWkkIAe~VgTRT~vQVRSHAQKYF~KL~k~~ 76 (765)
....||.||..++-+.+-.|=| .+.-++..+ +||+.-|..+|--|..+.-...
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~ 62 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEA 62 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHH
Confidence 3568999999999999999865 444444445 8999999999988776544433
No 54
>PRK09364 moaC molybdenum cofactor biosynthesis protein MoaC; Provisional
Probab=27.32 E-value=54 Score=33.30 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHcCCCCcCCCCC
Q 004260 437 AAATVAAATAWWAAHGLLPLCAPFH 461 (765)
Q Consensus 437 aaATVAAAtAWWAahGLLPlcaPl~ 461 (765)
+.|-+|+..|==-+.-|||||-|++
T Consensus 56 ~~AriAgi~aaK~T~~LIPlCHpi~ 80 (159)
T PRK09364 56 ATARIAGIMAAKRTSDLIPLCHPLM 80 (159)
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCc
Confidence 3344444444445558999999965
No 55
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=25.55 E-value=1.1e+02 Score=28.78 Aligned_cols=38 Identities=16% Similarity=0.442 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHhChhHHHHHHHhCC----CCHHHHHhHHHHH
Q 004260 28 TEEEHNRFLEALKLYGRAWQRIEEHIGT----KKAVQIRSHAQKF 68 (765)
Q Consensus 28 TeEEHelFLeGLe~YGrdWkkIAe~VgT----RT~vQVRSHAQKY 68 (765)
|.++.+.|-+. .|++|++++..+|- =|..+|..=+.+|
T Consensus 1 ~~~~~q~~~~n---vGr~WK~laR~Lg~~cral~d~~ID~I~~~y 42 (90)
T cd08780 1 TPADQQHFAKS---VGKKWKPVGRSLQKNCRALRDPAIDNLAYEY 42 (90)
T ss_pred CHHHHHHHHHH---HhHHHHHHHHHHcccccccchhHHHHHHhhc
Confidence 45666666654 48999999999982 3556666655555
No 56
>PF01967 MoaC: MoaC family; InterPro: IPR002820 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry contains the molybdenum cofactor biosynthesis protein MoaC.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 2EKN_B 1EKS_A 1EKR_A 3JQM_D 2IIH_A 3JQJ_I 2IDE_K 3JQK_A 2OHD_B 2EEY_A.
Probab=24.70 E-value=46 Score=32.94 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHcCCCCcCCCCC
Q 004260 438 AATVAAATAWWAAHGLLPLCAPFH 461 (765)
Q Consensus 438 aATVAAAtAWWAahGLLPlcaPl~ 461 (765)
.|-+|+-.|==-+.-|||||-||+
T Consensus 43 vAriAgI~aaKkT~~LIPlCHpi~ 66 (136)
T PF01967_consen 43 VARIAGIMAAKKTSELIPLCHPIP 66 (136)
T ss_dssp HHHHHHHHHHHHHHHHSTT-----
T ss_pred hHHHHHHHHhhhhhhhcccccccc
Confidence 333344444344458999999965
No 57
>PF12451 VPS11_C: Vacuolar protein sorting protein 11 C terminal; InterPro: IPR024763 Vps 11 is one of the evolutionarily conserved class C vacuolar protein sorting genes (c-vps: vps11, vps16, vps18, and vps33), whose products physically associate to form the c-vps protein complex required for vesicle docking and fusion. This entry represents the C-terminal domain of vps11.
Probab=24.60 E-value=65 Score=26.57 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHhChhHHHHHHHhC
Q 004260 28 TEEEHNRFLEALKLYGRAWQRIEEHIG 54 (765)
Q Consensus 28 TeEEHelFLeGLe~YGrdWkkIAe~Vg 54 (765)
..+.|++|...|+.-...++-|++|+|
T Consensus 17 ~~~~~d~F~~~L~~s~D~F~vIaeyfG 43 (49)
T PF12451_consen 17 SADQHDLFFKQLEESEDRFSVIAEYFG 43 (49)
T ss_pred HhhcHHHHHHHHHhCCCCchhHHHHHc
Confidence 356799999999887789999999997
No 58
>PLN02375 molybderin biosynthesis protein CNX3
Probab=23.54 E-value=62 Score=35.22 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCCCCC
Q 004260 436 IAAATVAAATAWWAAHGLLPLCAPFH 461 (765)
Q Consensus 436 iaaATVAAAtAWWAahGLLPlcaPl~ 461 (765)
++.|-||+-.|==-+.-|||||-||+
T Consensus 167 LavArIAGImAAKkTseLIPLCHPLp 192 (270)
T PLN02375 167 LGVAKIAGINGAKQTSSLIPLCHNIA 192 (270)
T ss_pred HHHHHHHHHHHhhccccccccCCCcc
Confidence 55666666666667779999999965
No 59
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=21.94 E-value=2.1e+02 Score=26.45 Aligned_cols=33 Identities=18% Similarity=0.416 Sum_probs=26.8
Q ss_pred CCcCCHHHHHHHHHHHHHh----Ch----hHHHHHHHhCCC
Q 004260 24 RERWTEEEHNRFLEALKLY----GR----AWQRIEEHIGTK 56 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~Y----Gr----dWkkIAe~VgTR 56 (765)
...||+++.-.+|+||-.| |+ +|...-++|...
T Consensus 4 qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~ 44 (98)
T PF04504_consen 4 QRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGS 44 (98)
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHH
Confidence 4569999999999999999 73 788877776533
No 60
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=21.36 E-value=2.1e+02 Score=28.89 Aligned_cols=49 Identities=22% Similarity=0.444 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHHHHhCh---hHHHHHHHhCCCCHHHHHhHHHHHHHHHHH
Q 004260 26 RWTEEEHNRFLEALKLYGR---AWQRIEEHIGTKKAVQIRSHAQKFFSKLEK 74 (765)
Q Consensus 26 ~WTeEEHelFLeGLe~YGr---dWkkIAe~VgTRT~vQVRSHAQKYF~KL~k 74 (765)
-.+..+...||.+|-.||- +|+-+-..+.-||...|+.|+--|+..|..
T Consensus 40 GFn~rQR~~Fln~vMR~G~~~f~~~w~~~~Lr~Ks~~ei~aY~~LFm~HL~E 91 (145)
T PF06461_consen 40 GFNPRQRKAFLNAVMRYGMGAFDWKWFVPRLRGKSEKEIRAYGSLFMRHLCE 91 (145)
T ss_pred ccCHHHHHHHHHHHHHHCcCcccchHHhhhhccccHHHHHHHHHHHHHHhcC
Confidence 5789999999999999996 898888888899999999999987777643
No 61
>PF02097 Filo_VP35: Filoviridae VP35; InterPro: IPR002953 The filoviridae are a group of viruses that cause haemorrhagic fevers with a high mortality rate. The family currently contains three viruses: Ebola virus sp., Lake Victoria marburgvirus and Reston ebolavirus, named after their corresponding outbreak regions. They possess negative-stranded RNA genomes, which encode at least 7 proteins. The VP35 protein is found in the genomes of all filoviruses. Its function is presently unknown, but it is thought to share the function of the phosphorylated proteins (polymerase subunits) of rhabdoviruses and paramyxoviruses due to its position in the genome. There is no evidence however, to suggest that VP35 is phosphorylated [].; PDB: 3KS8_D 3L2A_A 3KS4_A 3L28_E 3L25_D 3FKE_B 3L26_A 3L27_D 3L29_B.
Probab=21.04 E-value=32 Score=37.81 Aligned_cols=25 Identities=40% Similarity=0.593 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCCC
Q 004260 431 PSMAAIAAATVAAATAWWAAHGLLP 455 (765)
Q Consensus 431 PSmaaiaaATVAAAtAWWAahGLLP 455 (765)
|-|..=|.||.||+=|+|.-||-=|
T Consensus 127 vmttGrATaTaaA~~Ay~~EHg~pP 151 (321)
T PF02097_consen 127 VMTTGRATATAAATEAYWQEHGRPP 151 (321)
T ss_dssp -------------------------
T ss_pred eeecCCcchhHHHhhhhHHhcCCCC
Confidence 3366678999999999999999743
Done!