BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004261
(765 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 263/670 (39%), Positives = 372/670 (55%), Gaps = 41/670 (6%)
Query: 104 TTRSPQFLGISSDFGL--SAGYSKLDFDKASLDVIIGVLDTGVWPESKSFDDSAMPEVPT 161
TT + FL ++ GL ++G + DVI+ VLD+G+WPES SF D MPE+P
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQ--------DVIVAVLDSGIWPESASFQDDGMPEIPK 52
Query: 162 KWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRDYDGHGTHTAS 221
+W+G C+ G F+ +CN+KLIGA +F+KG + + N S RD DGHGTH AS
Sbjct: 53 RWKGICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMN---SARDTDGHGTHCAS 109
Query: 222 TAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFGSDILAGIDRAIQDGVDVL 281
AG S GYA G ARG+A AR+A YK + G F SD++A +D+A+ DGVD++
Sbjct: 110 ITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMI 169
Query: 282 SMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTKASLANVAPWILTVGAGTLD 341
S+S G P Y D I++ +F AM KG++VS SAGN GP SL N +PWIL V +G D
Sbjct: 170 SISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTD 229
Query: 342 RDFPAYVFLGNKKKATGVSLYSGNG-MGNKPVSLVYXXXXXXXXXXXXXXXXXXQPELVR 400
R F + LGN K G SL+ + + PV +Y Q E
Sbjct: 230 RTFAGTLTLGNGLKIRGWSLFPARAFVRDSPV--IY----NKTLSDCSSEELLSQVENPE 283
Query: 401 GKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELVADSHLLPAVAIGRKMGDIV 460
+VICD + + + R + ++ + P V + +K G V
Sbjct: 284 NTIVICDDNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPN---PGVVVNKKEGKQV 340
Query: 461 REYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAW 520
Y K PTA +TF T L+ +P+PVVAA S+RGP+ I KPD++ PGV ILAA+
Sbjct: 341 INYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAY 400
Query: 521 TEASGPTELEKDT-RRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTAY 579
T + + T + + SGTSM+ PH +G+AA+LKAAHP+WSPSAI+SA+MTTA
Sbjct: 401 PPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTAD 460
Query: 580 VVDNTKSPLHDAADGRLSTPWAHGSGHVNPQKAISPGLVYDASTEDYVAFLCSLGYTIEH 639
+DNT+ P+ D+ + + +TP G+GHV+P +A+ PGLVYDA+ +DYV LCSL +T E
Sbjct: 461 PLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQ 520
Query: 640 VQAIVKRP-NITCTRKFNTPGELNYPSFSVLF---GDQRVV--RYTRELTNVGPARSLYN 693
+ I + + C+ N +LNYPSF L+ G+ ++ ++ R +TNVG + Y
Sbjct: 521 FKTIARSSASHNCS---NPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYK 577
Query: 694 VTADGPSTVGISVRPKRLLFRTVGEKKRYTVT--FVAKNGDQKMGGAAFGSIVW--GNAQ 749
P ISV P+ L+F+ EK+ YT+T ++ G + GSI W N
Sbjct: 578 AKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSR----NVGSITWVEQNGN 633
Query: 750 HQVRSPVAFS 759
H VRSP+ S
Sbjct: 634 HSVRSPIVTS 643
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/663 (39%), Positives = 362/663 (54%), Gaps = 52/663 (7%)
Query: 104 TTRSPQFLGISSDFGLSAGYSKLDFDKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKW 163
TTRS FLG F L+ + ++++GVLDTG+WPES SFDD P KW
Sbjct: 1 TTRSWDFLG----FPLTVPRRS----QVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKW 52
Query: 164 RGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRDYDGHGTHTASTA 223
+G CE+ +F CN+K+IGAR + G ++ P + PRD +GHGTHTASTA
Sbjct: 53 KGTCETSNNFR---CNRKIIGARSYHIGRPIS-------PGDVNGPRDTNGHGTHTASTA 102
Query: 224 AGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFGSDILAGIDRAIQDGVDVLSM 283
AG V+ A+L G G ARG AR+A YKVCW GC +DILA D AI DGVD++S+
Sbjct: 103 AGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISL 162
Query: 284 SLGGGSAP-YYRDTIAVGAFAAMEKGIVVSCSAGNSGPTKASLANVAPWILTVGAGTLDR 342
S+GG + Y+ D IA+G+F A+E+GI+ S SAGN GP + A+++PW+L+V A T+DR
Sbjct: 163 SVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDR 222
Query: 343 DFPAYVFLGNKKKATGVSLYSGNGMGNKPVSLV----YXXXXXXXXXXXXXXXXXXQPEL 398
F V +GN + GVS+ N N+ LV P L
Sbjct: 223 KFVTQVQIGNGQSFQGVSI---NTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNL 279
Query: 399 VRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELVADSHLLPAVAIGRKMGD 458
++GK+V+C+ E + A GV M S ADS+ LP+ +
Sbjct: 280 LKGKIVVCEASFGPH-EFFKSLDGAAGVLM------TSNTRDYADSYPLPSSVLDPNDLL 332
Query: 459 IVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNILA 518
Y ++ +P A + T+LN +PVV +FSSRGPN T ++KPD+ GPGV ILA
Sbjct: 333 ATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATKDVIKPDISGPGVEILA 391
Query: 519 AWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTA 578
AW + + R T FNI+SGTSMSCPH++G+A +K +P WSP+AIKSALMTTA
Sbjct: 392 AWPSVAPVGGIR---RNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTA 448
Query: 579 YVVDNTKSPLHDAADGRLSTPWAHGSGHVNPQKAISPGLVYDASTEDYVAFLCSLGYTIE 638
++ +P + +A+GSGHVNP KA+ PGLVYDA+ DYV FLC GY +
Sbjct: 449 SPMNARFNPQAE---------FAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQ 499
Query: 639 HVQAIVKRPNITCTRKFNTPGELNYPSFSVLFGDQRVVR--YTRELTNVGPARSLYNVTA 696
V+ I + + +LNYPSF + + + R LT+V P S Y
Sbjct: 500 AVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMI 559
Query: 697 DGPSTVGISVRPKRLLFRTVGEKKRYTVTFVAKNGDQKMGGAAFGSIVWGNAQHQVRSPV 756
P + ISV P L F +G++K +T+T G K G S+VW + H VRSP+
Sbjct: 560 SAPQGLTISVNPNVLSFNGLGDRKSFTLTV---RGSIK-GFVVSASLVWSDGVHYVRSPI 615
Query: 757 AFS 759
+
Sbjct: 616 TIT 618
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 115/481 (23%), Positives = 189/481 (39%), Gaps = 81/481 (16%)
Query: 215 HGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGC--FGSDILAGIDR 272
HGTH +G+ NA G A++ +V G + + I
Sbjct: 97 HGTH----VSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRD 152
Query: 273 AIQDGVDVLSMSLGGGSAPYYR--DTIAVGAFAAMEKGIVVSCSAGNS----GPTKASLA 326
A+ G V++MS G + Y D A KG+ + SAGN G T+ LA
Sbjct: 153 AVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLA 212
Query: 327 N-----------VAPWILTVGAGTLDRDFPAYVFLG-NKKKATGVSLYSGNGMG-NKPVS 373
+ A LTV + + D+ + + +A + + S N NK
Sbjct: 213 DHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTDDHQAKEMPVLSTNRFEPNKAYD 272
Query: 374 LVYXXXXXXXXXXXXXXXXXXQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANT 433
Y V+GK+ + +RG +K A + AG VG+++ +
Sbjct: 273 YAYANRGMKEDDFKD----------VKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDN 322
Query: 434 AASGEEL-VADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGT--VLNVRPSPVVA 490
G + + + +PA I RK G ++++ N +TF T VL ++
Sbjct: 323 QDKGFPIELPNVDQMPAAFISRKDGLLLKD------NSKKTITFNATPKVLPTASDTKLS 376
Query: 491 AFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPH 550
FSS G + +KPD+ PG +IL++ K+ +SGTSMS P
Sbjct: 377 RFSSWG--LTADGNIKPDIAAPGQDILSS-------------VANNKYAKLSGTSMSAPL 421
Query: 551 LSGVAALLK----AAHPDWSPSA----IKSALMTTAYVVDNTKSPLHDAADGRLSTPWAH 602
++G+ LL+ +PD +PS K LM++A + L+D + +P
Sbjct: 422 VAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSA-------TALYDEDEKAYFSPRQQ 474
Query: 603 GSGHVNPQKAISPGLVYDASTEDYVAFLCSLGYTIEHVQAIVKRPNITCTRKFNTPGELN 662
G+G V+ +KA S +Y + +D + L + + V T K + P EL
Sbjct: 475 GAGAVDAKKA-SAATMY-VTDKDNTSSKVHLNNVSDKFEVTV-----TVHNKSDKPQELY 527
Query: 663 Y 663
Y
Sbjct: 528 Y 528
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 73/134 (54%), Gaps = 17/134 (12%)
Query: 479 TVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKF 538
TV V V+ FSSRGP LKP+V+ PG I+AA ASG + + +
Sbjct: 299 TVGAVDKYDVITDFSSRGP--TADNRLKPEVVAPGNWIIAA--RASGTSMGQP--INDYY 352
Query: 539 NIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLST 598
GT+M+ PH++G+AALL AHP W+P +K+AL+ TA +V P + AD
Sbjct: 353 TAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIV----KP-DEIAD----- 402
Query: 599 PWAHGSGHVNPQKA 612
A+G+G VN KA
Sbjct: 403 -IAYGAGRVNAYKA 415
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 78/141 (55%), Gaps = 14/141 (9%)
Query: 204 NEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFG 263
N +P D +GHGTH AS AAG A ++G +GMA A++ KV G
Sbjct: 169 NGKTTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLNGQGSGS 221
Query: 264 -SDILAGIDRAIQD----GVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNS 318
SDI+ G+D A+Q+ G+ V+++SLG + D+++ A + G+VV +AGNS
Sbjct: 222 ISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNS 281
Query: 319 GPTKASLAN--VAPWILTVGA 337
GP K ++ + A ++TVGA
Sbjct: 282 GPNKYTVGSPAAASKVITVGA 302
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 101/426 (23%), Positives = 167/426 (39%), Gaps = 66/426 (15%)
Query: 215 HGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGC--FGSDILAGIDR 272
HGTH +G+ NA G A++ +V G + + I
Sbjct: 88 HGTH----VSGILSGNAPSETKEPYRLEGAXPEAQLLLXRVEIVNGLADYARNYAQAIRD 143
Query: 273 AIQDGVDVLSMSLGGGSAPYYR--DTIAVGAFAAMEKGIVVSCSAGNS----GPTKASLA 326
AI G V++ S G + Y D A KG+ + SAGN G T+ LA
Sbjct: 144 AINLGAKVINXSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLA 203
Query: 327 N-----------VAPWILTVGAGTLDRDFPAYVFL--GNKKKATGVSLYSGNGMGNKPVS 373
+ A LTV + + D+ V + +++ L + NK
Sbjct: 204 DHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKEXPVLSTNRFEPNKAYD 263
Query: 374 LVYXXXXXXXXXXXXXXXXXXQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANT 433
Y V+GK+ + +RG +K A + AG VG+++ +
Sbjct: 264 YAYANRGTKEDDFKD----------VKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDN 313
Query: 434 AASGEEL-VADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGT--VLNVRPSPVVA 490
G + + + PA I RK G ++++ NP +TF T VL ++
Sbjct: 314 QDKGFPIELPNVDQXPAAFISRKDGLLLKD------NPQKTITFNATPKVLPTASGTKLS 367
Query: 491 AFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPH 550
FSS G + +KPD+ PG +IL++ K+ +SGTS S P
Sbjct: 368 RFSSWG--LTADGNIKPDIAAPGQDILSS-------------VANNKYAKLSGTSXSAPL 412
Query: 551 LSGVAALLK----AAHPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSGH 606
++G+ LL+ +PD +PS L V+ ++ + L+D + +P G+G
Sbjct: 413 VAGIXGLLQKQYETQYPDXTPS---ERLDLAKKVLXSSATALYDEDEKAYFSPRQQGAGA 469
Query: 607 VNPQKA 612
V+ +KA
Sbjct: 470 VDAKKA 475
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 36/123 (29%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I + K+ SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------------QSTLPGNKYGAKSGTSMASP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSGHVNP 609
H++G AAL+ + HP+W+ + ++S+L +NT + L D+ + +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGDS--------FYYGKGLINV 270
Query: 610 QKA 612
Q A
Sbjct: 271 QAA 273
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 194 MAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATY 253
+AGG+ S P+E +D + HGTH A T A + N S+ GV G+A A +
Sbjct: 44 VAGGA-SFVPSETNPFQDNNSHGTHVAGTVAAL---NNSI-----GV-LGVAPCASLYAV 93
Query: 254 KVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSLGG 287
KV G S I+ GI+ AI + +DV++MSLGG
Sbjct: 94 KVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 36/123 (29%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I + K+ SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIXSTLP-------------GNKYGAYSGTSMASP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSGHVNP 609
H++G AAL+ + HP+W+ + ++S+L +NT + L D+ + +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGDS--------FYYGKGLINV 270
Query: 610 QKA 612
Q A
Sbjct: 271 QAA 273
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 194 MAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATY 253
+AGG+ S P+E +D + HGTH A T A L + GV G+A A +
Sbjct: 44 VAGGA-SFVPSETNPFQDNNSHGTHVAGTVAA--------LDNSIGV-LGVAPSASLYAV 93
Query: 254 KVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSLGG 287
KV G S I+ GI+ AI + +DV++MSLGG
Sbjct: 94 KVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 22/95 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I + K+ SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIXSTL-------------PGNKYGAYSGTSMASP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALM-TTAYVVDN 583
H++G AAL+ + HP+W+ + ++S+L TT Y+ D+
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTYLGDS 260
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 194 MAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATY 253
+AGG+ S P+E +D + HGTH A T A L + GV G+A A +
Sbjct: 44 VAGGA-SFVPSETNPFQDNNSHGTHVAGTVAA--------LDNSIGV-LGVAPSASLYAV 93
Query: 254 KVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSLGG 287
KV G S I+ GI+ AI + +DV++MSLGG
Sbjct: 94 KVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 21/88 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I W+ G K+ SGT M+ P
Sbjct: 175 ASFSSVGPEL--------DVMAPGVSI---WSTLPG----------NKYGAKSGTXMASP 213
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTT 577
H++G AAL+ + HP+W+ + ++S+L T
Sbjct: 214 HVAGAAALILSKHPNWTNTQVRSSLENT 241
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 20/95 (21%)
Query: 194 MAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATY 253
+AGG+ S P+E +D + HGTH A T V A A +
Sbjct: 41 VAGGA-SFVPSETNPFQDNNSHGTHVAGTVLAV------------------APSASLYAV 81
Query: 254 KVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSLGG 287
KV G S I+ GI+ AI + +DV++MSLGG
Sbjct: 82 KVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 116
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 36/123 (29%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I + K+ SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSICSTLP-------------GNKYGAKSGTSMASP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSGHVNP 609
H++G AAL+ + HP+W+ + ++S+L +NT + L D+ + +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGDS--------FYYGKGLINV 270
Query: 610 QKA 612
Q A
Sbjct: 271 QAA 273
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 194 MAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATY 253
+AGG+ S P+E +D + HGTH A T A L + GV G+A A +
Sbjct: 44 VAGGA-SFVPSETNPFQDNNSHGTHVAGTVAA--------LDNSIGV-LGVAPSASLYAV 93
Query: 254 KVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSLGG 287
KV G S I+ GI+ AI + +DV++MSLGG
Sbjct: 94 KVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 36/123 (29%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I + K+ +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------------QSTLPGNKYGAYNGTSMASP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSGHVNP 609
H++G AAL+ + HP+W+ + ++S+L +NT + L D+ + +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGDS--------FYYGKGLINV 270
Query: 610 QKA 612
Q A
Sbjct: 271 QAA 273
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 194 MAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATY 253
+AGG+ S P+E +D + HGTH A T A + N S+ GV G+A A +
Sbjct: 44 VAGGA-SMVPSETNPFQDNNSHGTHVAGTVAAL---NNSI-----GV-LGVAPSASLYAV 93
Query: 254 KVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSLGG 287
KV G S I+ GI+ AI + +DV++MSLGG
Sbjct: 94 KVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 36/123 (29%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I + K+ SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSICSTLP-------------GNKYGAKSGTSMASP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSGHVNP 609
H++G AAL+ + HP+W+ + ++S+L +NT + L D+ + +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGDS--------FYYGKGLINV 270
Query: 610 QKA 612
Q A
Sbjct: 271 QAA 273
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 194 MAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATY 253
+AGG+ S P+E +D + HGTH A T A + N S+ GV G+A A +
Sbjct: 44 VAGGA-SFVPSETNPFQDNNSHGTHVAGTVAAL---NNSI-----GV-LGVAPCASLYAV 93
Query: 254 KVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSLGG 287
KV G S I+ GI+ AI + +DV++MSLGG
Sbjct: 94 KVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 85/160 (53%), Gaps = 19/160 (11%)
Query: 211 DYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFG-SDILAG 269
D +GHGTH A T A L +GV G+A + + KV +G S I++G
Sbjct: 59 DGNGHGTHVAGTVAA--------LDNTTGV-LGVAPNVSLYAIKVLNSSGSGSYSAIVSG 109
Query: 270 IDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGP--TKASLAN 327
I+ A Q+G+DV++MSLGG P + A GIVV +AGNSG ++ ++
Sbjct: 110 IEWATQNGLDVINMSLGG---PSGSTALKQAVDKAYASGIVVVAAAGNSGNSGSQNTIGY 166
Query: 328 VAPW--ILTVGAGTLDRDFPAYVFLGNKKK--ATGVSLYS 363
A + ++ VGA +++ ++ +G++ + A GVS+YS
Sbjct: 167 PAKYDSVIAVGAVDSNKNRASFSSVGSELEVMAPGVSVYS 206
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 21/89 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS G + +V+ PGV++ + + P+ + ++GTSM+ P
Sbjct: 186 ASFSSVGSEL--------EVMAPGVSVYSTY-----PSN--------TYTSLNGTSMASP 224
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTA 578
H++G AAL+ + +P S S +++ L +TA
Sbjct: 225 HVAGAAALILSKYPTLSASQVRNRLSSTA 253
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 21/89 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A FSS GP + DV+ PGV+I + K+ +SGTSM+ P
Sbjct: 178 APFSSVGPEL--------DVMAPGVSICSTLPGG-------------KYGALSGTSMASP 216
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTA 578
H++G AAL+ + HP+W+ + ++S+L TA
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTA 245
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 20/95 (21%)
Query: 193 HMAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVAT 252
++AGG+ S P+E +D + HGTH A T V A A +
Sbjct: 43 NVAGGA-SFVPSETNPFQDNNSHGTHVAGTVLAV------------------APSASLYA 83
Query: 253 YKVCWKTGC-FGSDILAGIDRAIQDGVDVLSMSLG 286
KV G S I+ GI+ AI + +DV++MSLG
Sbjct: 84 VKVLGADGSGQASWIINGIEWAIANNMDVINMSLG 118
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 36/123 (29%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I + K+ SGT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------------QSTLPGNKYGAYSGTXMASP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSGHVNP 609
H++G AAL+ + HP+W+ + ++S+L +NT + L D+ + +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGDS--------FYYGKGLINV 270
Query: 610 QKA 612
Q A
Sbjct: 271 QAA 273
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 194 MAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATY 253
+AGG+ S P+E +D + HGTH A T A + N S+ GV G+A A +
Sbjct: 44 VAGGA-SMVPSETNPFQDNNSHGTHVAGTVAAL---NNSI-----GV-LGVAPSASLYAV 93
Query: 254 KVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSLGG 287
KV G S I+ GI+ AI + +DV++MSLGG
Sbjct: 94 KVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 36/123 (29%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I++ K+ SGT+M+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSIVSTLP-------------GNKYGAKSGTAMASP 216
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSGHVNP 609
H++G AAL+ + HP+W+ + ++S+L +NT + L D+ + +G G +N
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGDS--------FYYGKGLINV 261
Query: 610 QKA 612
Q A
Sbjct: 262 QAA 264
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 20/96 (20%)
Query: 193 HMAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVAT 252
++AGG+ S P+E +D + HGTH A T V A A +
Sbjct: 43 NVAGGA-SFVPSETNPFQDNNSHGTHVAGTVLAV------------------APSASLYA 83
Query: 253 YKVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSLGG 287
KV G S I+ GI+ AI + +DV++MSLGG
Sbjct: 84 VKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 119
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I + K+ SGTSM+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICSTLP-------------GNKYGAKSGTSMASP 216
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNT 584
H++G AAL+ + HP+W+ + ++S+L T + N+
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGNS 251
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 18/95 (18%)
Query: 193 HMAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVAT 252
++AGG+ S P+E +D + HGTH A T V +ASL A G ++
Sbjct: 43 NVAGGA-SFVPSETNPFQDNNSHGTHVAGTVLAV-APSASLYAVKVLGADGSGQYS---- 96
Query: 253 YKVCWKTGCFGSDILAGIDRAIQDGVDVLSMSLGG 287
W I+ GI+ AI + +DV++MSLGG
Sbjct: 97 ----W--------IINGIEWAIANNMDVINMSLGG 119
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I + K+ +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------------QSTLPGNKYGAYNGTSMASP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTT 577
H++G AAL+ + HP+W+ + ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNT 253
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 194 MAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATY 253
+AGG+ S P+E +D + HGTH A T A + N S+ GV G+A A +
Sbjct: 44 VAGGA-SMVPSETNPFQDNNSHGTHVAGTVAAL---NNSI-----GV-LGVAPSASLYAV 93
Query: 254 KVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSLGG 287
KV G S I+ GI+ AI + +DV++MSLGG
Sbjct: 94 KVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I + K+ +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------------QSTLPGNKYGAYNGTSMASP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTT 577
H++G AAL+ + HP+W+ + ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNT 253
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 194 MAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATY 253
+AGG+ S P+E + +D + HGTH A T A + N S+ GV G+A + +
Sbjct: 44 VAGGA-SMVPSETPNFQDDNSHGTHVAGTVAAL---NNSI-----GV-LGVAPSSALYAV 93
Query: 254 KVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSLGG 287
KV G S I+ GI+ AI + +DV++MSLGG
Sbjct: 94 KVLGDAGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 36/123 (29%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I + K+ SGT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------------QSTLPGNKYGAYSGTXMASP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSGHVNP 609
H++G AAL+ + HP+W+ + ++S+L +NT + L D+ + +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGDS--------FYYGKGLINV 270
Query: 610 QKA 612
Q A
Sbjct: 271 QAA 273
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 194 MAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATY 253
+AGG+ S P+E +D + HGTH A T A + N S+ GV G+A A +
Sbjct: 44 VAGGA-SMVPSETNPFQDNNSHGTHVAGTVAAL---NNSI-----GV-LGVAPCASLYAV 93
Query: 254 KVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSLGG 287
KV G S I+ GI+ AI + +DV++MSLGG
Sbjct: 94 KVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 36/123 (29%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I + K+ SGT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------------QSTLPGNKYGAKSGTXMASP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSGHVNP 609
H++G AAL+ + HP+W+ + ++S+L +NT + L D+ + +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGDS--------FYYGKGLINV 270
Query: 610 QKA 612
Q A
Sbjct: 271 QAA 273
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 194 MAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATY 253
+AGG+ S P+E +D + HGTH A T A + N S+ GV G+A A +
Sbjct: 44 VAGGA-SFVPSETNPFQDNNSHGTHVAGTVAAL---NNSI-----GV-LGVAPSASLYAV 93
Query: 254 KVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSLGG 287
KV G S I+ GI+ AI + +DV++MSLGG
Sbjct: 94 KVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I + K+ SGTSM+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICSTL-------------PGNKYGAKSGTSMASP 216
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTT 577
H++G AAL+ + HP+W+ + ++S+L T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 18/95 (18%)
Query: 193 HMAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVAT 252
++AGG+ S P+E +D + HGTH A T V +ASL A G ++
Sbjct: 43 NVAGGA-SFVPSETNPFQDNNSHGTHVAGTVLAV-APSASLYAVKVLGADGSGQYS---- 96
Query: 253 YKVCWKTGCFGSDILAGIDRAIQDGVDVLSMSLGG 287
W I+ GI+ AI + +DV++MSLGG
Sbjct: 97 ----W--------IINGIEWAIANNMDVINMSLGG 119
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I + K+ +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------------QSTLPGNKYGAYNGTSMASP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTT 577
H++G AAL+ + HP+W+ + ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 194 MAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATY 253
+AGG+ S P+E +D + HGTH A T A + N S+ GV G+A A +
Sbjct: 44 VAGGA-SMVPSETNPFQDNNSHGTHVAGTVAAL---NNSI-----GV-LGVAPSASLYAV 93
Query: 254 KVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSLGG 287
KV G S I+ GI+ AI + +DV++MSLGG
Sbjct: 94 KVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I + K+ +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------------QSTLPGNKYGAYNGTSMASP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTT 577
H++G AAL+ + HP+W+ + ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 194 MAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATY 253
+AGG+ S P+E +D + HGTH A T A + N S+ GV G+A A +
Sbjct: 44 VAGGA-SMVPSETNPFQDNNSHGTHVAGTVAAL---NNSI-----GV-LGVAPSASLYAV 93
Query: 254 KVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSLGG 287
KV G S I+ GI+ AI + +DV++MSLGG
Sbjct: 94 KVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 21/89 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A FSS GP + DV+ PGV+I + K+ +SGT+M+ P
Sbjct: 178 APFSSVGPEL--------DVMAPGVSICSTLPGG-------------KYGALSGTAMASP 216
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTA 578
H++G AAL+ + HP+W+ + ++S+L TA
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTA 245
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 20/95 (21%)
Query: 193 HMAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVAT 252
++AGG+ S P+E +D + HGTH A T V A A +
Sbjct: 43 NVAGGA-SFVPSETNPFQDNNSHGTHVAGTVLAV------------------APSASLYA 83
Query: 253 YKVCWKTGC-FGSDILAGIDRAIQDGVDVLSMSLG 286
KV G S I+ GI+ AI + +DV++MSLG
Sbjct: 84 VKVLGADGSGQASWIINGIEWAIANNMDVINMSLG 118
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 21/88 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I++ K+ SGT+M+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSIVSTL-------------PGNKYGAKSGTAMASP 216
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTT 577
H++G AAL+ + HP+W+ + ++S+L T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 20/96 (20%)
Query: 193 HMAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVAT 252
++AGG+ S P+E +D + HGTH A T V A A +
Sbjct: 43 NVAGGA-SFVPSETNPFQDNNSHGTHVAGTVLAV------------------APSASLYA 83
Query: 253 YKVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSLGG 287
KV G S I+ GI+ AI + +DV++MSLGG
Sbjct: 84 VKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 119
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 36/123 (29%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I + K+ +GT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------------QSTLPGNKYGAYNGTXMASP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSGHVNP 609
H++G AAL+ + HP+W+ + ++S+L +NT + L D+ + +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGDS--------FYYGKGLINV 270
Query: 610 QKA 612
Q A
Sbjct: 271 QAA 273
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 194 MAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATY 253
+AGG+ S P+E +D + HGTH A T A + N S+ GV G+A A +
Sbjct: 44 VAGGA-SMVPSETNPFQDNNSHGTHVAGTVAAL---NNSI-----GV-LGVAPSASLYAV 93
Query: 254 KVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSLGG 287
KV G S I+ GI+ AI + +DV++MSLGG
Sbjct: 94 KVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 36/123 (29%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I + K+ +GT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------------QSTLPGNKYGAYNGTXMASP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSGHVNP 609
H++G AAL+ + HP+W+ + ++S+L +NT + L D+ + +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGDS--------FYYGKGLINV 270
Query: 610 QKA 612
Q A
Sbjct: 271 QAA 273
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 194 MAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATY 253
+AGG+ S P+E +D + HGTH A T A + N S+ GV G+A A +
Sbjct: 44 VAGGA-SMVPSETNPFQDNNSHGTHVAGTVAAL---NNSI-----GV-LGVAPSASLYAV 93
Query: 254 KVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSLGG 287
KV G S I+ GI+ AI + +DV++MSLGG
Sbjct: 94 KVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 21/88 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I + K+ SGT M+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICSTL-------------PGNKYGAKSGTXMASP 216
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTT 577
H++G AAL+ + HP+W+ + ++S+L T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 18/95 (18%)
Query: 193 HMAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVAT 252
++AGG+ S P+E +D + HGTH A T V +ASL A G ++
Sbjct: 43 NVAGGA-SFVPSETNPFQDNNSHGTHVAGTVLAV-APSASLYAVKVLGADGSGQYS---- 96
Query: 253 YKVCWKTGCFGSDILAGIDRAIQDGVDVLSMSLGG 287
W I+ GI+ AI + +DV++MSLGG
Sbjct: 97 ----W--------IINGIEWAIANNMDVINMSLGG 119
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 36/123 (29%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS GP + DV+ PGV+I + K+ +GTS + P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI-------------QSTLPGNKYGAYNGTSXASP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSGHVNP 609
H++G AAL+ + HP+W+ + ++S+L +NT + L D+ + +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGDS--------FYYGKGLINV 270
Query: 610 QKA 612
Q A
Sbjct: 271 QAA 273
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 194 MAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATY 253
+AGG+ S P+E +D + HGTH A T A + N S+ GV G+A A +
Sbjct: 44 VAGGA-SMVPSETNPFQDNNSHGTHVAGTVAAL---NNSI-----GV-LGVAPSASLYAV 93
Query: 254 KVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSLGG 287
KV G S I+ GI+ AI + DV++ SLGG
Sbjct: 94 KVLGADGSGQYSWIINGIEWAIANNXDVINXSLGG 128
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 13/78 (16%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSP 567
D++ PGVN+ + + ++ + ++GTSM+ PH++GVAAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 568 SAIKSALMTTAYVVDNTK 585
I++ L TA + NT
Sbjct: 238 VQIRNHLKNTATGLGNTN 255
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 197 GSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVC 256
G S P EP S +D +GHGTH A T A L + GV G+A A + KV
Sbjct: 45 GGASFVPGEP-STQDGNGHGTHVAGTIAA--------LNNSIGV-LGVAPSAELYAVKVL 94
Query: 257 WKTGCFGSDILA-GIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSA 315
+G +A G++ A +G+ V ++SLG +P T+ +A +G++V ++
Sbjct: 95 GASGSGSVSSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGVLVVAAS 151
Query: 316 GNSG 319
GNSG
Sbjct: 152 GNSG 155
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 197 GSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVC 256
G S P+E +D HGTH A T A + N S+ GV G+A A + KV
Sbjct: 46 GGASFVPSETNPYQDGSSHGTHVAGTIAAL---NNSI-----GV-LGVAPSASLYAVKVL 96
Query: 257 WKTGCFG-SDILAGIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSA 315
TG S I+ GI+ AI + +DV++MSLGG + T+ A+ GIVV+ +A
Sbjct: 97 DSTGSGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALKTV---VDKAVSSGIVVAAAA 153
Query: 316 GNSG 319
GN G
Sbjct: 154 GNEG 157
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 21/95 (22%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS G + DV+ PGV+I + + +GT M+ P
Sbjct: 187 ASFSSVGSEL--------DVMAPGVSI-------------QSTLPGGTYGAYNGTXMATP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNT 584
H++G AAL+ + HP W+ + ++ L +TA + N+
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS 260
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 197 GSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVC 256
G S P+E +D HGTH A T A + N S+ GV G+A A + KV
Sbjct: 46 GGASFVPSETNPYQDGSSHGTHVAGTIAAL---NNSI-----GV-LGVAPSASLYAVKVL 96
Query: 257 WKTGCFG-SDILAGIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSA 315
TG S I+ GI+ AI + +DV++MSLGG + T+ A+ GIVV+ +A
Sbjct: 97 DSTGSGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALKTV---VDKAVSSGIVVAAAA 153
Query: 316 GNSG 319
GN G
Sbjct: 154 GNEG 157
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS G + DV+ PGV+I + + +GTSM+ P
Sbjct: 187 ASFSSAGSEL--------DVMAPGVSI-------------QSTLPGGTYGAYNGTSMATP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTA 578
H++G AAL+ + HP W+ + ++ L +TA
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTA 254
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 13/78 (16%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSP 567
D++ PGVN+ + + ++ + ++GTSM+ PH++G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 568 SAIKSALMTTAYVVDNTK 585
I++ L TA + +T
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 13/78 (16%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSP 567
D++ PGVN+ + + ++ + ++GTSM+ PH++G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 568 SAIKSALMTTAYVVDNTK 585
I++ L TA + +T
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 14/129 (10%)
Query: 197 GSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVC 256
G S P EP S +D +GHGTH A T A + N S+ GV G+A A + KV
Sbjct: 45 GGASFVPGEP-STQDGNGHGTHVAGTIAAL---NNSI-----GV-LGVAPSAELYAVKVL 94
Query: 257 WKTGCFG-SDILAGIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSA 315
G S I G++ A +G+ V ++SLG +P T+ +A +G++V ++
Sbjct: 95 GADGRGAISSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGVLVVAAS 151
Query: 316 GNSGPTKAS 324
GNSG + S
Sbjct: 152 GNSGASSIS 160
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 13/78 (16%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSP 567
D++ PGVN+ + + ++ + ++GTSM+ PH++G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 568 SAIKSALMTTAYVVDNTK 585
I++ L TA + +T
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 197 GSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVC 256
G S P EP S +D +GHGTH A T A L + GV G+A A + KV
Sbjct: 45 GGASFVPGEP-STQDGNGHGTHVAGTIAA--------LNNSIGV-LGVAPSAELYAVKVL 94
Query: 257 WKTGCFGSDILA-GIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSA 315
+G +A G++ A +G+ V ++SLG +P T+ +A +G++V ++
Sbjct: 95 GASGSGSVSSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGVLVVAAS 151
Query: 316 GNSG 319
GNSG
Sbjct: 152 GNSG 155
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 13/78 (16%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSP 567
D++ PGVN+ + + ++ + ++GTSM+ PH++G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 568 SAIKSALMTTAYVVDNTK 585
I++ L TA + +T
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 14/124 (11%)
Query: 197 GSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVC 256
G S P EP S +D +GHGTH A T A L + GV G+A +A + KV
Sbjct: 45 GGASFVPGEP-STQDGNGHGTHVAGTIAA--------LNNSIGV-LGVAPNAELYAVKVL 94
Query: 257 WKTGCFGSDILA-GIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSA 315
+G +A G++ A +G+ V ++SLG +P T+ +A +G++V ++
Sbjct: 95 GASGSGSVSSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGVLVVAAS 151
Query: 316 GNSG 319
GNSG
Sbjct: 152 GNSG 155
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 13/78 (16%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSP 567
D++ PGVN+ + + ++ + ++GTSM+ PH++G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 568 SAIKSALMTTAYVVDNTK 585
I++ L TA + +T
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 14/124 (11%)
Query: 197 GSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVC 256
G S P EP S +D +GHGTH A T A L + GV G+A +A + KV
Sbjct: 45 GGASFVPGEP-STQDGNGHGTHVAGTIAA--------LNNSIGV-LGVAPNAELYAVKVL 94
Query: 257 WKTGCFGSDILA-GIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSA 315
+G + +A G++ A +G+ V ++SLG +P T+ +A +G++V ++
Sbjct: 95 GASGGGSNSSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGVLVVAAS 151
Query: 316 GNSG 319
GNSG
Sbjct: 152 GNSG 155
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 197 GSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVC 256
G S P+E +D HGTH A T A + N S+ GV G++ A + KV
Sbjct: 46 GGASFVPSETNPYQDGSSHGTHVAGTIAAL---NNSI-----GV-LGVSPSASLYAVKVL 96
Query: 257 WKTGCFG-SDILAGIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSA 315
TG S I+ GI+ AI + +DV++MSLGG + T+ A+ GIVV+ +A
Sbjct: 97 DSTGSGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALKTV---VDKAVSSGIVVAAAA 153
Query: 316 GNSG 319
GN G
Sbjct: 154 GNEG 157
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 21/95 (22%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS G + DV+ PGV+I + + +GT M+ P
Sbjct: 187 ASFSSAGSEL--------DVMAPGVSI-------------QSTLPGGTYGAYNGTCMATP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNT 584
H++G AAL+ + HP W+ + ++ L +TA + N+
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS 260
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSP 567
D+ PG +I ++W T + N +SGTSM+ PH++GVAAL +P+ SP
Sbjct: 198 DIYAPGSSITSSWY-----------TSNSATNTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 568 SAIKSALMTTA 578
+ + + L T A
Sbjct: 247 AQVTNLLKTRA 257
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSP 567
D++ PGVN+ + + ++ + ++GT M+ PH++G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 568 SAIKSALMTTAYVVDNTK 585
I++ L TA + +T
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSP 567
D++ PGVN+ + + ++ + ++GT M+ PH++G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 568 SAIKSALMTTAYVVDNTK 585
I++ L TA + +T
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 14/124 (11%)
Query: 197 GSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVC 256
G S P EP S +D +GHGTH A T A L + GV G+A +A + KV
Sbjct: 45 GGASFVPGEP-STQDGNGHGTHVAGTIAA--------LNNSIGV-LGVAPNAELYAVKVL 94
Query: 257 WKTGCFGSDILA-GIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSA 315
+G +A G++ A +G+ V ++SLG +P T+ +A +G++V ++
Sbjct: 95 GASGSGSVSSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGVLVVAAS 151
Query: 316 GNSG 319
GNSG
Sbjct: 152 GNSG 155
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSP 567
D++ PGVN+ + + ++ + ++GT M+ PH++G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 568 SAIKSALMTTAYVVDNTK 585
I++ L TA + +T
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 14/124 (11%)
Query: 197 GSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVC 256
G S P EP S +D +GHGTH A T A L + GV G+A A + KV
Sbjct: 45 GGASFVPGEP-STQDGNGHGTHVAGTIAA--------LDNSIGV-LGVAPSAELYAVKVL 94
Query: 257 WKTGCFG-SDILAGIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSA 315
+G S I G++ A +G+ V ++SLG +P T+ +A +G++V ++
Sbjct: 95 GASGSGAISSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGVLVVAAS 151
Query: 316 GNSG 319
GN G
Sbjct: 152 GNEG 155
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSP 567
D++ PGVN+ + + ++ + ++GT M+ PH++G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 568 SAIKSALMTTAYVVDNTK 585
I++ L TA + +T
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 197 GSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVC 256
G S P EP S +D +GHGTH A T A L + GV G+A A + KV
Sbjct: 45 GGASFVPGEP-STQDGNGHGTHVAGTIAA--------LDNSIGV-LGVAPSAELYAVKVL 94
Query: 257 WKTGCFG-SDILAGIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSA 315
+G S I G++ A +G+ V ++SLG +P T+ +A +G++V ++
Sbjct: 95 GASGSGAISSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGVLVVAAS 151
Query: 316 GNSG 319
GNSG
Sbjct: 152 GNSG 155
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 37/137 (27%)
Query: 488 VVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRR---TKFNIMSGT 544
+ A+FS+ G ++ D+ PG +IL + ++ TRR ++ M+GT
Sbjct: 233 IRASFSNYGVDV--------DLAAPGQDIL---------STVDSGTRRPVSDAYSFMAGT 275
Query: 545 SMSCPHLSGVAALLKAA----HPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPW 600
SM+ PH+SGVAAL+ +A + + +P+ +K L++ T SP + GRL
Sbjct: 276 SMATPHVSGVAALVISAANSVNKNLTPAELKDVLVS-------TTSPFN----GRLDR-- 322
Query: 601 AHGSGHVNPQKAISPGL 617
A GSG V+ + A++ L
Sbjct: 323 ALGSGIVDAEAAVNSVL 339
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 37/137 (27%)
Query: 488 VVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRR---TKFNIMSGT 544
+ A+FS+ G ++ D+ PG +IL + ++ TRR ++ M+GT
Sbjct: 233 IRASFSNYGVDV--------DLAAPGQDIL---------STVDSGTRRPVSDAYSFMAGT 275
Query: 545 SMSCPHLSGVAALLKAA----HPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPW 600
SM+ PH+SGVAAL+ +A + + +P+ +K L++ T SP + GRL
Sbjct: 276 SMATPHVSGVAALVISAANSVNKNLTPAELKDVLVS-------TTSPFN----GRLDR-- 322
Query: 601 AHGSGHVNPQKAISPGL 617
A GSG V+ + A++ L
Sbjct: 323 ALGSGIVDAEAAVNSVL 339
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 37/137 (27%)
Query: 488 VVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRR---TKFNIMSGT 544
+ A+FS+ G ++ D+ PG +IL + ++ TRR ++ M+GT
Sbjct: 233 IRASFSNYGVDV--------DLAAPGQDIL---------STVDSGTRRPVSDAYSFMAGT 275
Query: 545 SMSCPHLSGVAALLKAA----HPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPW 600
SM+ PH+SGVAAL+ +A + + +P+ +K L++ T SP + GRL
Sbjct: 276 SMATPHVSGVAALVISAANSVNKNLTPAELKDVLVS-------TTSPFN----GRLDR-- 322
Query: 601 AHGSGHVNPQKAISPGL 617
A GSG V+ + A++ L
Sbjct: 323 ALGSGIVDAEAAVNSVL 339
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSP 567
D+ PG +I +AW T T ++GTSM+ PH++GVAAL +P +P
Sbjct: 196 DLFAPGASIPSAWY-----------TSDTATQTLNGTSMATPHVAGVAALYLEQNPSATP 244
Query: 568 SAIKSALMTTA 578
+++ SA++ A
Sbjct: 245 ASVASAILNGA 255
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 21/89 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS G + +V+ PG + + + PT + ++GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY-----PTN--------TYATLNGTSMASP 224
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTA 578
H++G AAL+ + HP+ S S +++ L +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 21/89 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS G + +V+ PG + + + PT + ++GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY-----PTN--------TYATLNGTSMASP 224
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTA 578
H++G AAL+ + HP+ S S +++ L +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 211 DYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVC-WKTGCFGSDILAG 269
D +GHGTH A T A + L GVA ++ +A KV S I++G
Sbjct: 59 DGNGHGTHVAGTVAALDNTTGVL-----GVAPSVSLYA----VKVLNSSGSGSYSGIVSG 109
Query: 270 IDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTK 322
I+ A +G+DV++MSLGG S A+A + + ++GNSG T
Sbjct: 110 IEWATTNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTN 162
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 21/89 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS G + +V+ PG + + + PT + ++GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY-----PTN--------TYATLNGTSMASP 224
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTA 578
H++G AAL+ + HP+ S S +++ L +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 21/89 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS G + +V+ PG + + + PT + ++GTSM+ P
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTY-----PTN--------TYATLNGTSMASP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTA 578
H++G AAL+ + HP+ S S +++ L +TA
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTA 254
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 211 DYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVC-WKTGCFGSDILAG 269
D +GHGTH A T A + L GVA ++ +A KV S I++G
Sbjct: 60 DGNGHGTHVAGTVAALDNTTGVL-----GVAPSVSLYA----VKVLNSSGSGSYSGIVSG 110
Query: 270 IDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTK 322
I+ A +G+DV++MSLGG S A+A + + ++GNSG T
Sbjct: 111 IEWATTNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTN 163
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 21/89 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS G + +V+ PG + + + PT + ++GTSM+ P
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTY-----PTN--------TYATLNGTSMASP 225
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTA 578
H++G AAL+ + HP+ S S +++ L +TA
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTA 254
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 21/89 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS G + +V+ PG + + + PT + ++GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY-----PTN--------TYATLNGTSMASP 224
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTA 578
H++G AAL+ + HP+ S S +++ L +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 211 DYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVC-WKTGCFGSDILAG 269
D +GHGTH A T A L +GV G+A + KV S I++G
Sbjct: 59 DGNGHGTHVAGTVAA--------LDNTTGV-LGVAPSVSLYAVKVLNSSGSGSYSGIVSG 109
Query: 270 IDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTK 322
I+ A +G+DV++MSLGG S A+A + + ++GNSG T
Sbjct: 110 IEWATTNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTN 162
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 16/114 (14%)
Query: 478 GTVLNVRPS--------PVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTEL 529
G N+RPS VA FSSRGP +KPDV+ PG IL+A + + P
Sbjct: 183 GATENLRPSFGSYADNINHVAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLA-PDSS 239
Query: 530 EKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDW-----SPSAIKSALMTTA 578
+K+ M GTSM+ P ++G A L+ PS +K+AL+ A
Sbjct: 240 FWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 75/196 (38%), Gaps = 27/196 (13%)
Query: 396 PELVRGKVVICDR----GINARVEKGAVVRDAGGVGMILANTAASGEELVADSHLLPAVA 451
P LV G + D GI + GA V + G + T + + ++ V+
Sbjct: 235 PALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFDYAMEHGVVMVVS 294
Query: 452 IGRKMGDIVREYAKTVP---NPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPD 508
G D +Y P AL +GGT VA FSSR +
Sbjct: 295 AGNNTSDSHHQYPAGYPGVIQVAALDYYGGTFR-------VAGFSSRSDGV--------S 339
Query: 509 VIGPGVNILAAW-----TEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHP 563
V PGV IL+ G E T ++ GTSM+ PH++GV A+L P
Sbjct: 340 VGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFP 399
Query: 564 DWSPSAIKSALMTTAY 579
+ P I+ L TA+
Sbjct: 400 NAKPWQIRKLLENTAF 415
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 259 TGCFGSD-ILAGIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGN 317
G G D + AGI A G V++ S GG Y T+ AME G+V+ SAGN
Sbjct: 241 NGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSY---TMKEAFDYAMEHGVVMVVSAGN 297
Query: 318 S 318
+
Sbjct: 298 N 298
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 27/171 (15%)
Query: 211 DYDGHGTHTASTAAGVPVANASLLGYASGV---------ARGMATHARVATYKVCWKTGC 261
D +GHGTH T A + + ++G A GV ARG +++ +A + +
Sbjct: 149 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIA---IGIEQAI 204
Query: 262 FGSD---------ILAGIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVS 312
G D I+AG A D +V+SMSLGG + Y + + A+ A GIV+
Sbjct: 205 LGPDGVADKDGDGIIAGDPDA--DAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIV 259
Query: 313 CSAGNSGPTKASLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYS 363
++GN G S P ++ VGA + + ++ + A GV + S
Sbjct: 260 AASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS 310
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 489 VAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSC 548
+A+FS+R +P+V PGV+IL+ + + S + + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDDS-------------YETLMGTAMAT 327
Query: 549 PHLSGVAALLKAAH 562
PH+SGV AL++AA+
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 23/169 (13%)
Query: 211 DYDGHGTHTASTAAGVPVANASLLGYASGV---------ARGMATHARVATYKVCWKTGC 261
D +GHGTH T A + + ++G A GV ARG +++ +A + +
Sbjct: 149 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIA---IGIEQAI 204
Query: 262 FGSDILAGID-------RAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCS 314
G D +A D D +V+SMSLGG + Y + + A+ A GIV+ +
Sbjct: 205 LGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAA 261
Query: 315 AGNSGPTKASLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYS 363
+GN G S P ++ VGA + + ++ + A GV + S
Sbjct: 262 SGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS 310
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 489 VAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSC 548
+A+FS+R +P+V PGV+IL+ + + S + + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDDS-------------YETLMGTAMAT 327
Query: 549 PHLSGVAALLKAAH 562
PH+SGV AL++AA+
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 23/169 (13%)
Query: 211 DYDGHGTHTASTAAGVPVANASLLGYASGV---------ARGMATHARVATYKVCWKTGC 261
D +GHGTH T A + + ++G A GV ARG +++ +A + +
Sbjct: 146 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIA---IGIEQAI 201
Query: 262 FGSDILAGID-------RAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCS 314
G D +A D D +V+SMSLGG + Y + + A+ A GIV+ +
Sbjct: 202 LGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAA 258
Query: 315 AGNSGPTKASLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYS 363
+GN G S P ++ VGA + + ++ + A GV + S
Sbjct: 259 SGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS 307
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 489 VAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSC 548
+A+FS+R +P+V PGV+IL+ + + S + + GT+M+
Sbjct: 288 IASFSNR----------QPEVSAPGVDILSTYPDDS-------------YETLMGTAMAT 324
Query: 549 PHLSGVAALLKAAH 562
PH+SGV AL++AA+
Sbjct: 325 PHVSGVVALIQAAY 338
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 23/169 (13%)
Query: 211 DYDGHGTHTASTAAGVPVANASLLGYASGV---------ARGMATHARVATYKVCWKTGC 261
D +GHGTH T A + + ++G A GV ARG +++ +A + +
Sbjct: 149 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIA---IGIEQAI 204
Query: 262 FGSDILAGID-------RAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCS 314
G D +A D D +V+SMSLGG + Y + + A+ A GIV+ +
Sbjct: 205 LGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAA 261
Query: 315 AGNSGPTKASLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYS 363
+GN G S P ++ VGA + + ++ + A GV + S
Sbjct: 262 SGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS 310
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 489 VAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSC 548
+A+FS+R +P+V PGV+IL+ + + S + + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDDS-------------YETLMGTAMAT 327
Query: 549 PHLSGVAALLKAAH 562
PH+SGV AL++AA+
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 23/126 (18%)
Query: 463 YAKTVPNPTALLTFGGTVLNVRPSPV--VAAFSSRG----PNMVTPQILKPDVIGPGVNI 516
Y +PN A+ NV+ + VA +SSRG Q ++ PG ++
Sbjct: 179 YPGALPNAIAVAAL----ENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSV 234
Query: 517 LAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMT 576
+ W +N +SGTSM+ PH+SG+AA + A +P S + ++S L
Sbjct: 235 YSTWYNGG-------------YNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQE 281
Query: 577 TAYVVD 582
A VD
Sbjct: 282 RAKSVD 287
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 207 ESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGC-FGSD 265
S D +GHGTH A TA ++ + + G+A A + YKV +G + D
Sbjct: 63 NSCTDRNGHGTHVAGTALADGGSDQAGI-------YGVAPDADLWAYKVLLDSGSGYSDD 115
Query: 266 ILAGI----DRAIQDGVD-VLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGP 320
I A I D+A G ++SMSLG + I+ A KG+++ +AGNSG
Sbjct: 116 IAAAIRHAADQATATGTKTIISMSLGSSAN---NSLISSAVNYAYSKGVLIVAAAGNSGY 172
Query: 321 TKASL 325
++ ++
Sbjct: 173 SQGTI 177
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 32/167 (19%)
Query: 168 ESGPDFS-PKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRDYDGHGTHTASTAAGV 226
++G D++ P L K + G F Y P D + HGTH A A
Sbjct: 39 DTGVDYTHPDLDGKVIKGYDFVDNDY---------------DPMDLNNHGTHVAGIA--- 80
Query: 227 PVANASLLGYASGVARGMATHARVATYKVCWKTGCFG-SDILAGIDRAIQDGVDVLSMSL 285
A+ A+G+A GMA + R+ + + G SDI I A G +V+++SL
Sbjct: 81 ----AAETNNATGIA-GMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSL 135
Query: 286 GGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTK----ASLANV 328
G + T+ A KG VV +AGN+G + AS NV
Sbjct: 136 G---CDCHTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENV 179
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 13/51 (25%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALL 558
DV+ PGV+I++ T ++ MSGTSM+ PH++G+AALL
Sbjct: 202 DVVAPGVDIVSTIT-------------GNRYAYMSGTSMASPHVAGLAALL 239
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 490 AAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCP 549
A+FSS G + +V+ PG + + + PT + ++GT M+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTY-----PTN--------TYATLNGTXMASP 224
Query: 550 HLSGVAALLKAAHPDWSPSAIKSALMTTA 578
H++G AAL+ + HP+ S S +++ L +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 211 DYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVC-WKTGCFGSDILAG 269
D +GHGTH A T A L +GV G+A + KV S I++G
Sbjct: 59 DGNGHGTHVAGTVAA--------LDNTTGV-LGVAPSVSLYAVKVLNSSGSGSYSGIVSG 109
Query: 270 IDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTK 322
I+ A +G+DV++MSLGG S A+A + + ++GNSG T
Sbjct: 110 IEWATTNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTN 162
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 538 FNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTA 578
+ +GTSM+ PH+SGVA L+ + HP+ S S +++AL TA
Sbjct: 362 YEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATA 402
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 14/142 (9%)
Query: 209 PRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-CFGSDIL 267
P + + HGTH A T A + N ++G +A + KV + G + S ++
Sbjct: 59 PGNNNAHGTHVAGTIAAI-ANNEGVVGVMPN------QNANIHIVKVFNEAGWGYSSSLV 111
Query: 268 AGIDRAIQD-GVDVLSMSLGG-GSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTKASL 325
A ID + G +V++MSLGG GS R+ + G+++ +AGN+G + S
Sbjct: 112 AAIDTCVNSGGANVVTMSLGGSGSTTTERNALNT----HYNNGVLLIAAAGNAGDSSYSY 167
Query: 326 ANVAPWILTVGAGTLDRDFPAY 347
+++V A + D A+
Sbjct: 168 PASYDSVMSVAAVDSNLDHAAF 189
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 23/169 (13%)
Query: 211 DYDGHGTHTASTAAGVPVANASLLGYASGV---------ARGMATHARVATYKVCWKTGC 261
D +GHGTH T A + + ++G A GV ARG +++ +A + +
Sbjct: 71 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIA---IGIEQAI 126
Query: 262 FGSDILAGID-------RAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCS 314
G D +A D D +V+SMSLGG + Y + + A+ A GIV+ +
Sbjct: 127 LGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAA 183
Query: 315 AGNSGPTKASLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYS 363
+GN G S P ++ VGA + + ++ + A GV + S
Sbjct: 184 SGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS 232
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 489 VAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSC 548
+A+FS+R +P+V PGV+IL+ + + S + + GT+M+
Sbjct: 213 IASFSNR----------QPEVSAPGVDILSTYPDDS-------------YETLMGTAMAT 249
Query: 549 PHLSGVAALLKAAH 562
PH+SGV AL++AA+
Sbjct: 250 PHVSGVVALIQAAY 263
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 23/169 (13%)
Query: 211 DYDGHGTHTASTAAGVPVANASLLGYASGV---------ARGMATHARVATYKVCWKTGC 261
D +GHGTH T A + + ++G A GV ARG +++ +A + +
Sbjct: 69 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIA---IGIEQAI 124
Query: 262 FGSDILAGID-------RAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCS 314
G D +A D D +V+SMSLGG + Y + + A+ A GIV+ +
Sbjct: 125 LGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAA 181
Query: 315 AGNSGPTKASLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYS 363
+GN G S P ++ VGA + + ++ + A GV + S
Sbjct: 182 SGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS 230
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 23/74 (31%)
Query: 489 VAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSC 548
+A+FS+R +P+V PGV+IL+ + + S + + GT M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYPDDS-------------YETLMGTXMAT 247
Query: 549 PHLSGVAALLKAAH 562
PH+SGV AL++AA+
Sbjct: 248 PHVSGVVALIQAAY 261
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 23/169 (13%)
Query: 211 DYDGHGTHTASTAAGVPVANASLLGYASGV---------ARGMATHARVATYKVCWKTGC 261
D +GHGTH T A + + ++G A GV ARG +++ +A + +
Sbjct: 69 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIA---IGIEQAI 124
Query: 262 FGSDILAGID-------RAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCS 314
G D +A D D +V+SMSLGG + Y + + A+ A GIV+ +
Sbjct: 125 LGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAA 181
Query: 315 AGNSGPTKASLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYS 363
+GN G S P ++ VGA + + ++ + A GV + S
Sbjct: 182 SGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS 230
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 489 VAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSC 548
+A+FS+R +P+V PGV+IL+ + + S + + GT+M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYPDDS-------------YETLMGTAMAT 247
Query: 549 PHLSGVAALLKAAH 562
PH+SGV AL++AA+
Sbjct: 248 PHVSGVVALIQAAY 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 23/169 (13%)
Query: 211 DYDGHGTHTASTAAGVPVANASLLGYASGV---------ARGMATHARVATYKVCWKTGC 261
D +GHGTH T A + + ++G A GV ARG +++ +A + +
Sbjct: 69 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIA---IGIEQAI 124
Query: 262 FGSDILAGID-------RAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCS 314
G D +A D D +V+SMSLGG + Y + + A+ A GIV+ +
Sbjct: 125 LGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAA 181
Query: 315 AGNSGPTKASLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYS 363
+GN G S P ++ VGA + + ++ + A GV + S
Sbjct: 182 SGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS 230
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 23/74 (31%)
Query: 489 VAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSC 548
+A+FS+R +P+V PGV+IL+ + + S + + GT M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYPDDS-------------YETLMGTCMAT 247
Query: 549 PHLSGVAALLKAAH 562
PH+SGV AL++AA+
Sbjct: 248 PHVSGVVALIQAAY 261
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 489 VAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSC 548
+A+FS+R +P+V PGV+IL+ + + S + + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDDS-------------YETLMGTAMAT 327
Query: 549 PHLSGVAALLKAAH 562
PH+SGV AL++AA+
Sbjct: 328 PHVSGVVALIQAAY 341
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 211 DYDGHGTHTASTAAGVPVANASLLGYASGV---------ARGMATHARVATYKVCWKTGC 261
D +GHGTH T A + + ++G A GV ARG +++ +A + +
Sbjct: 149 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIA---IGIEQAI 204
Query: 262 FGSDILAGIDRAIQDGV----------DVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVV 311
G D +A D DG+ +V+SMSLGG + Y + + A+ A GIV+
Sbjct: 205 LGPDGVADKDG---DGIIAGDPDDAAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVI 258
Query: 312 SCSAGNSGPTKASLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYS 363
++GN G S P ++ VGA + + ++ + A GV + S
Sbjct: 259 VAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS 310
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 489 VAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSC 548
+A+FS+R +P+V PGV+IL+ + + S + + GT+M+
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTYPDDS-------------YETLMGTAMAT 258
Query: 549 PHLSGVAALLKAAH 562
PH+SGV AL++AA+
Sbjct: 259 PHVSGVVALIQAAY 272
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 23/169 (13%)
Query: 211 DYDGHGTHTASTAAGVPVANASLLGYASGV---------ARGMATHARVATYKVCWKTGC 261
D +GHGTH T A + + ++G A GV ARG +++ +A + +
Sbjct: 80 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIA---IGIEQAI 135
Query: 262 FGSDILAGID-------RAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCS 314
G D +A D D +V+SMSLGG + Y + + A+ A GIV+ +
Sbjct: 136 LGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAA 192
Query: 315 AGNSGPTKASLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYS 363
+GN G S P ++ VGA + + ++ + A GV + S
Sbjct: 193 SGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS 241
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 489 VAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSC 548
+A+FS+R +P+V PGV+IL+ + + S + + GT+M+
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTYPDDS-------------YETLMGTAMAT 258
Query: 549 PHLSGVAALLKAAH 562
PH+SGV AL++AA+
Sbjct: 259 PHVSGVVALIQAAY 272
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Query: 211 DYDGHGTHTASTAAGVPVANASLLGYASGV---------ARGMATHARVA---TYKVCWK 258
D +GHGTH T A + + ++G A GV ARG +++ +A +
Sbjct: 80 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIAQAILGP 138
Query: 259 TGCFGSD---ILAGIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSA 315
G D I+AG D +V+SMSLGG + Y + + A+ A GIV+ ++
Sbjct: 139 DGVADKDGDGIIAG--DPDDDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAAS 193
Query: 316 GNSGPTKASLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYS 363
GN G S P ++ VGA + + ++ + A GV + S
Sbjct: 194 GNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILS 241
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 23/126 (18%)
Query: 463 YAKTVPNPTALLTFGGTVLNVRPSPV--VAAFSSRG----PNMVTPQILKPDVIGPGVNI 516
Y +PN A+ NV+ + VA +SSRG Q ++ PG ++
Sbjct: 179 YPGALPNAIAVAAL----ENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSV 234
Query: 517 LAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMT 576
+ W +N +SGT M+ PH+SG+AA + A +P S + ++S L
Sbjct: 235 YSTWYNGG-------------YNTISGTXMATPHVSGLAAKIWAENPSLSNTQLRSNLQE 281
Query: 577 TAYVVD 582
A VD
Sbjct: 282 RAKSVD 287
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 207 ESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGC-FGSD 265
S D +GHGTH A TA ++ + + G+A A + YKV +G + D
Sbjct: 63 NSCTDRNGHGTHVAGTALADGGSDQAGI-------YGVAPDADLWAYKVLLDSGSGYSDD 115
Query: 266 ILAGI----DRAIQDGVD-VLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGP 320
I A I D+A G ++SMSLG + I+ A KG+++ +AGNSG
Sbjct: 116 IAAAIRHAADQATATGTKTIISMSLGSSAN---NSLISSAVNYAYSKGVLIVAAAGNSGY 172
Query: 321 TKASL 325
++ ++
Sbjct: 173 SQGTI 177
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 20/121 (16%)
Query: 536 TKFNIMSGTSMSCPHLSGVAAL----LKAAHPDWSPSAIKSALMTTAYVVDNTKSPLHDA 591
+K + +GTS + PH++G AL LK + ++SP +IK A+ TA TK D
Sbjct: 453 SKSQLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTA-----TKLGYVD- 506
Query: 592 ADGRLSTPWAHGSGHVNPQKAISPGLVYDASTEDYVAFLCSLGYTIE---HVQAIVKRPN 648
P+A G G +N +KA + S ++ + F +G + H++ V+R +
Sbjct: 507 -------PFAQGHGLLNVEKAFEHLTEHRQSKDNXLRFSVRVGNNADKGIHLRQGVQRNS 559
Query: 649 I 649
I
Sbjct: 560 I 560
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 489 VAAFSSRGPNMVTPQ--ILKPDV--IGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGT 544
VA FSSRG I K DV PG + + W + + +SGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFDGG-------------YATISGT 248
Query: 545 SMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTAYVVD 582
SM+ PH +G+AA + A P S ++ L T A V D
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVND 286
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 11/122 (9%)
Query: 207 ESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFGSDI 266
S D GHGTH A +A +AN G SGV G+A A + YKV G +D
Sbjct: 63 NSCTDRQGHGTHVAGSA----LANG---GTGSGV-YGVAPEADLWAYKVLGDDGSGYADD 114
Query: 267 LAGIDRAIQDGVDVLSMSL---GGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTKA 323
+A R D L+ + + I A +KG+++ +AGNSGP
Sbjct: 115 IAEAIRHAGDQATALNTKVVINMSLGSSGESSLITNAVDYAYDKGVLIIAAAGNSGPKPG 174
Query: 324 SL 325
S+
Sbjct: 175 SI 176
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 478 GTVLNVRPS--------PVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTEL 529
G N+RPS VA FSSRGP +KPDV+ PG IL+A + + P
Sbjct: 183 GATENLRPSFGSYADNINHVAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLA-PDSS 239
Query: 530 EKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDW-----SPSAIKSALMTTA 578
+K+ GTS + P ++G A L+ PS +K+AL+ A
Sbjct: 240 FWANHDSKYAYXGGTSXATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 13/51 (25%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALL 558
D+ GPG +IL+ W S TR +SGTSM+ PH++G+AA L
Sbjct: 200 DIFGPGTDILSTWIGGS--------TRS-----ISGTSMATPHVAGLAAYL 237
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 58/150 (38%), Gaps = 49/150 (32%)
Query: 208 SPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFG---- 263
S RD +GHGTH A T TY V KT FG
Sbjct: 62 SSRDGNGHGTHCAGTVGS-------------------------RTYGVAKKTQLFGVKVL 96
Query: 264 --------SDILAGIDRAIQDGVD-------VLSMSLGGGSAPYYRDTIAVGAFAAMEKG 308
S I+AG+D D + V S+SLGGG Y ++ A G
Sbjct: 97 DDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG----YSSSVNSAAARLQSSG 152
Query: 309 IVVSCSAGNSGPTKASLANVA-PWILTVGA 337
++V+ +AGN+ + + + P + TVGA
Sbjct: 153 VMVAVAAGNNNADARNYSPASEPSVCTVGA 182
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 13/51 (25%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALL 558
D+ GPG +IL+ W S TR +SGTSM+ PH++G+AA L
Sbjct: 200 DIFGPGTSILSTWIGGS--------TRS-----ISGTSMATPHVAGLAAYL 237
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 58/150 (38%), Gaps = 49/150 (32%)
Query: 208 SPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFG---- 263
S RD +GHGTH A T TY V KT FG
Sbjct: 62 SSRDGNGHGTHCAGTVGS-------------------------RTYGVVKKTQLFGVKVL 96
Query: 264 --------SDILAGIDRAIQDGVD-------VLSMSLGGGSAPYYRDTIAVGAFAAMEKG 308
S I+AG+D D + V S+SLGGG Y ++ A G
Sbjct: 97 DDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG----YSSSVNSAAARLQSSG 152
Query: 309 IVVSCSAGNSGPTKASLANVA-PWILTVGA 337
++V+ +AGN+ + + + P + TVGA
Sbjct: 153 VMVAVAAGNNNADARNYSPASEPSVCTVGA 182
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 13/51 (25%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALL 558
D+ GPG +IL+ W S TR +SGTSM+ PH++G+AA L
Sbjct: 200 DIFGPGTSILSTWIGGS--------TRS-----ISGTSMATPHVAGLAAYL 237
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 58/150 (38%), Gaps = 49/150 (32%)
Query: 208 SPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFG---- 263
S RD +GHGTH A T TY V KT FG
Sbjct: 62 SSRDGNGHGTHCAGTVGS-------------------------RTYGVAKKTQLFGVKVL 96
Query: 264 --------SDILAGIDRAIQDGVD-------VLSMSLGGGSAPYYRDTIAVGAFAAMEKG 308
S I+AG+D D + V S+SLGGG Y ++ A G
Sbjct: 97 DDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG----YSSSVNSAAARLQSSG 152
Query: 309 IVVSCSAGNSGPTKASLANVA-PWILTVGA 337
++V+ +AGN+ + + + P + TVGA
Sbjct: 153 VMVAVAAGNNNADARNYSPASEPSVCTVGA 182
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 23/116 (19%)
Query: 447 LPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILK 506
L +A G + D R + + N +L+ G T P A FS+ G +
Sbjct: 200 LIVIAAGNENQDASRTWPSSCNN---VLSVGATT----PKGKRAPFSNYGARV------- 245
Query: 507 PDVIGPGVNILAAW-TEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAA 561
+ PG NIL+ +GP R+ + + +GTSM+ PH+SGVAAL+ +A
Sbjct: 246 -HLAAPGTNILSTIDVGQAGPV-------RSSYGMKAGTSMAAPHVSGVAALVISA 293
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 540 IMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNTKSPL 588
+M+GTS + P SG ALL +A+PD S ++ L +A VD P+
Sbjct: 331 VMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPV 379
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 23/116 (19%)
Query: 447 LPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILK 506
L +A G + D R + + N +L+ G T P A FS+ G +
Sbjct: 200 LIVIAAGNENQDASRTWPSSCNN---VLSVGATT----PKGKRAPFSNYG--------AR 244
Query: 507 PDVIGPGVNILAAW-TEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAA 561
+ PG NIL+ +GP R+ + + +GTSM+ PH+SGVAAL+ +A
Sbjct: 245 VHLAAPGTNILSTIDVGQAGPV-------RSSYGMKAGTSMAAPHVSGVAALVISA 293
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 215 HGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFGSDILAGIDRAI 274
HG+H A T A V + G A G A+V +V K G + SDI G+ +
Sbjct: 105 HGSHVAGTIAAVTNNGVGVAGVAYG--------AKVIPVRVLGKCGGYDSDITDGMYWSA 156
Query: 275 QDGVD----------VLSMSLGGG 288
+D V++MSLGGG
Sbjct: 157 GGHIDGVPDNQNPAQVVNMSLGGG 180
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 29/106 (27%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSP 567
DV PG +W ++ PT + + +SGTSM+ PH++GVA LL A S
Sbjct: 201 DVAAPG-----SWIYSTYPT--------STYASLSGTSMATPHVAGVAGLL--ASQGRSA 245
Query: 568 SAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSGHVNPQKAI 613
S I++A+ TA + T T WA G VN KA+
Sbjct: 246 SNIRAAIENTADKISGT------------GTYWAK--GRVNAYKAV 277
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 207 ESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGC-FGSD 265
+P++ +GHGTH A AA V ++G+A G A A + +V +G +
Sbjct: 63 STPQNGNGHGTHCAGIAAAV-------TNNSTGIA-GTAPKASILAVRVLDNSGSGTWTA 114
Query: 266 ILAGIDRAIQDGVDVLSMSLGG 287
+ GI A G V+S+SLGG
Sbjct: 115 VANGITYAADQGAKVISLSLGG 136
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 17/96 (17%)
Query: 519 AWTEASGPTELEKDTRRTK-FNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTT 577
+W + + P T T + +SGTSM+ PH++GVA LL A S S I++A+ T
Sbjct: 198 SWVDVAAPGSSIYSTYPTSTYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENT 255
Query: 578 AYVVDNTKSPLHDAADGRLSTPWAHGSGHVNPQKAI 613
A + T T WA G VN KA+
Sbjct: 256 ADKISGT------------GTYWAK--GRVNAYKAV 277
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 207 ESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGC-FGSD 265
+P++ +GHGTH A AA V ++G+A G A A + +V +G +
Sbjct: 63 STPQNGNGHGTHCAGIAAAV-------TNNSTGIA-GTAPKASILAVRVLDNSGSGTWTA 114
Query: 266 ILAGIDRAIQDGVDVLSMSLGG 287
+ GI A G V+S+SLGG
Sbjct: 115 VANGITYAADQGAKVISLSLGG 136
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 21/80 (26%)
Query: 479 TVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKF 538
TV S ++FS+ G N+V D+ PG NIL+ W +
Sbjct: 182 TVGATTSSDARSSFSNYG-NLV-------DIFAPGSNILSTWIGGT-------------T 220
Query: 539 NIMSGTSMSCPHLSGVAALL 558
N +SGTSM+ PH+ G+ A L
Sbjct: 221 NTISGTSMATPHIVGLGAYL 240
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 28/110 (25%)
Query: 211 DYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFG-SDILAG 269
D +GHGTH A T +G + G+A ++ KV +G S I++G
Sbjct: 68 DGNGHGTHCAGT-----------IGSKT---YGVAKKTKIYGVKVLDNSGSGSYSGIISG 113
Query: 270 IDRAIQD--------GVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVV 311
+D A+QD GV V +MSLGGG A D GA A + G+ +
Sbjct: 114 MDFAVQDSKSRSCPKGV-VANMSLGGGKAQSVND----GAAAMIRAGVFL 158
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 27/131 (20%)
Query: 204 NEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKV--CWKTGC 261
N+ +S D +GHGTH A T G G+A + + +V C +G
Sbjct: 60 NDADS-SDCNGHGTHVAGTIGGSQY--------------GVAKNVNIVGVRVLSCSGSGT 104
Query: 262 FGSDILAGIDRAIQD--GVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSG 319
S +++G+D Q+ G V +MSLGGG + + A++ G+ +AGNS
Sbjct: 105 T-SGVISGVDWVAQNASGPSVANMSLGGGQSTALDSAVQ----GAIQSGVSFMLAAGNS- 158
Query: 320 PTKASLANVAP 330
A N +P
Sbjct: 159 --NADACNTSP 167
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSP 567
D+ PG I +AW + + +SGTSM+ PH++GVAAL + +P
Sbjct: 196 DLFAPGSQIKSAWYDGG-------------YKTISGTSMATPHVAGVAALYLQENNGLTP 242
Query: 568 SAIKSALMTTA 578
+ L + A
Sbjct: 243 LQLTGLLNSRA 253
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 13/51 (25%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALL 558
D+ PG +I + W + N +SGTSM+ PH++G+AA L
Sbjct: 201 DIFAPGTSITSTWIGG-------------RTNTISGTSMATPHIAGLAAYL 238
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 59/140 (42%), Gaps = 27/140 (19%)
Query: 207 ESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFG-SD 265
+ RD GHGTH A T +G + G+A + KV +G S+
Sbjct: 62 STARDGHGHGTHCAGT-----------IGSKT---WGVAKKVSIFGVKVLDDSGSGSLSN 107
Query: 266 ILAGIDRAIQDGVD-------VLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNS 318
I+AG+D D V SMSLGGG Y + A G+ V+ +AGN
Sbjct: 108 IIAGMDFVASDRQSRNCPRRTVASMSLGGG----YSAALNQAAARLQSSGVFVAVAAGND 163
Query: 319 GPTKASLANVA-PWILTVGA 337
A+ + + P + TVGA
Sbjct: 164 NRDAANTSPASEPTVCTVGA 183
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 76/211 (36%), Gaps = 50/211 (23%)
Query: 158 EVPTKWR----------GQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPE 207
E P WR G ++G +++IG + Y +FS
Sbjct: 29 EAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFS------- 81
Query: 208 SPRDYDGHGTHTASTAAG----------VPVANASLLGYASGVARG-MATHARVATYKVC 256
D +GHGTH A T A P A+ ++ SG G M A+ Y V
Sbjct: 82 ---DNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVD 138
Query: 257 WKTGCFGSDILAGIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAG 316
W+ G G + +++MSLGG P + + A+ + V C+AG
Sbjct: 139 WR-GPKGEQMR------------IITMSLGG---PTDSEELHDAVKYAVSNNVSVVCAAG 182
Query: 317 NSGPTKA---SLANVAPWILTVGAGTLDRDF 344
N G + A A + + G +D D
Sbjct: 183 NEGDGREDTNEFAYPAAYNEVIAVGAVDFDL 213
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALL 558
D++ PGV I + + + SG EL SGT+M+ PH++G AL+
Sbjct: 226 DIVAPGVGIKSTYLD-SGYAEL------------SGTAMAAPHVAGALALI 263
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 76/211 (36%), Gaps = 50/211 (23%)
Query: 158 EVPTKWR----------GQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPE 207
E P WR G ++G +++IG + Y +FS
Sbjct: 11 EAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFS------- 63
Query: 208 SPRDYDGHGTHTASTAAG----------VPVANASLLGYASGVARG-MATHARVATYKVC 256
D +GHGTH A T A P A+ ++ SG G M A+ Y V
Sbjct: 64 ---DNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVD 120
Query: 257 WKTGCFGSDILAGIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAG 316
W+ G G + +++MSLGG P + + A+ + V C+AG
Sbjct: 121 WR-GPKGEQMR------------IITMSLGG---PTDSEELHDAVKYAVSNNVSVVCAAG 164
Query: 317 NSGPTKA---SLANVAPWILTVGAGTLDRDF 344
N G + A A + + G +D D
Sbjct: 165 NEGDGREDTNEFAYPAAYNEVIAVGAVDFDL 195
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALL 558
D++ PGV I + + + SG EL SGT+M+ PH++G AL+
Sbjct: 208 DIVAPGVGIKSTYLD-SGYAEL------------SGTAMAAPHVAGALALI 245
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALL 558
D++ PGV I + + + SG EL SGT+M+ PH++G AL+
Sbjct: 226 DIVAPGVGIKSTYLD-SGYAEL------------SGTAMAAPHVAGALALI 263
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 75/211 (35%), Gaps = 50/211 (23%)
Query: 158 EVPTKWR----------GQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPE 207
E P WR G ++G +++IG + Y +FS
Sbjct: 29 EAPAVWRASAKGAGQIIGVIDTGXQVDHPDLAERIIGGVNLTTDYGGDETNFS------- 81
Query: 208 SPRDYDGHGTHTASTAAG----------VPVANASLLGYASGVARG-MATHARVATYKVC 256
D +GHGTH A T A P A+ ++ SG G M A+ Y V
Sbjct: 82 ---DNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVD 138
Query: 257 WKTGCFGSDILAGIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAG 316
W+ G G + +++MSLGG P + + A+ + V +AG
Sbjct: 139 WR-GPKGEQMR------------IITMSLGG---PTDSEELHDAVKYAVSNNVSVVXAAG 182
Query: 317 NSGPTKA---SLANVAPWILTVGAGTLDRDF 344
N G + A A + + G +D D
Sbjct: 183 NEGDGREDTNEFAYPAAYNEVIAVGAVDFDL 213
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 16/81 (19%)
Query: 506 KPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDW 565
K ++ PG IL A P L +GTSM+ P ++G++ALL +
Sbjct: 247 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 294
Query: 566 ----SPSAIKSALMTTAYVVD 582
A+++AL+ TA D
Sbjct: 295 GKPVDAEAVRTALLKTAIPCD 315
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 16/81 (19%)
Query: 506 KPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDW 565
K ++ PG IL A P L +GTSM+ P ++G++ALL +
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 312
Query: 566 ----SPSAIKSALMTTAYVVD 582
A+++AL+ TA D
Sbjct: 313 GKPVDAEAVRTALLKTAIPCD 333
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 16/81 (19%)
Query: 506 KPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDW 565
K ++ PG IL A P L +GTSM+ P ++G++ALL +
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 312
Query: 566 ----SPSAIKSALMTTAYVVD 582
A+++AL+ TA D
Sbjct: 313 GKPVDAEAVRTALLKTAIPCD 333
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 508 DVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALL 558
D++ PGV I + + + SG EL SGT+M+ PH++G AL+
Sbjct: 226 DIVAPGVGIKSTYLD-SGYAEL------------SGTAMAAPHVAGALALI 263
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 75/211 (35%), Gaps = 50/211 (23%)
Query: 158 EVPTKWR----------GQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPE 207
E P WR G ++G +++IG + Y +FS
Sbjct: 29 EAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFS------- 81
Query: 208 SPRDYDGHGTHTASTAAG----------VPVANASLLGYASGVARG-MATHARVATYKVC 256
D +GHGTH A T A P A+ ++ SG G M A+ Y V
Sbjct: 82 ---DNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVD 138
Query: 257 WKTGCFGSDILAGIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAG 316
W+ G G + +++MSLGG P + + A+ + V +AG
Sbjct: 139 WR-GPKGEQMR------------IITMSLGG---PTDSEELHDAVKYAVSNNVSVVXAAG 182
Query: 317 NSGPTKA---SLANVAPWILTVGAGTLDRDF 344
N G + A A + + G +D D
Sbjct: 183 NEGDGREDTNEFAYPAAYNEVIAVGAVDFDL 213
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 8/44 (18%)
Query: 541 MSGTSMSCPHLSGVAALL------KAAHPDWSPSAIKSALMTTA 578
+SGTS + P +SGVAALL + PD P +K+AL+ +A
Sbjct: 220 LSGTSFATPIVSGVAALLLSLQIKRGEKPD--PQKVKNALLASA 261
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 403 VVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELV----------ADSHLLPAV 450
V+ + G+N RV G + G + ILAN+ G+ L A+ HL PA+
Sbjct: 57 VIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAM 114
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 403 VVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELV----------ADSHLLPAV 450
V+ + G+N RV G + G + ILAN+ G+ L A+ HL PA+
Sbjct: 57 VIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAM 114
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 21/81 (25%)
Query: 509 VIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALL------KAAH 562
++ PG +IL A + G TE +SGTS + P +SGVAALL +
Sbjct: 207 ILAPGEDILGA--KPGGGTER-----------LSGTSFATPIVSGVAALLLSEQVRRGET 253
Query: 563 PDWSPSAIKSALMTTAYVVDN 583
PD P ++ L+ +A D+
Sbjct: 254 PD--PQKVRQLLLQSALPCDD 272
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 21/81 (25%)
Query: 509 VIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALL------KAAH 562
++ PG +IL A + G TE +SGTS + P +SGVAALL +
Sbjct: 198 ILAPGEDILGA--KPGGGTER-----------LSGTSFATPIVSGVAALLLSEQVRRGET 244
Query: 563 PDWSPSAIKSALMTTAYVVDN 583
PD P ++ L+ +A D+
Sbjct: 245 PD--PQKVRQLLLQSALPCDD 263
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 403 VVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELV----------ADSHLLPAV 450
V+ + G+N RV G + G + ILAN+ G+ L A+ HL PA+
Sbjct: 57 VIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAM 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,290,017
Number of Sequences: 62578
Number of extensions: 940869
Number of successful extensions: 2544
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2190
Number of HSP's gapped (non-prelim): 229
length of query: 765
length of database: 14,973,337
effective HSP length: 106
effective length of query: 659
effective length of database: 8,340,069
effective search space: 5496105471
effective search space used: 5496105471
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)