Query 004261
Match_columns 765
No_of_seqs 487 out of 3218
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 20:21:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 7.8E-54 1.7E-58 459.6 30.7 306 100-579 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 2.2E-50 4.8E-55 448.6 23.2 302 110-619 295-618 (639)
3 cd05562 Peptidases_S53_like Pe 100.0 5.7E-49 1.2E-53 412.0 23.5 270 129-614 1-274 (275)
4 cd07497 Peptidases_S8_14 Pepti 100.0 1.9E-48 4E-53 414.1 25.1 286 132-578 1-311 (311)
5 cd07479 Peptidases_S8_SKI-1_li 100.0 2.4E-48 5.2E-53 404.4 24.1 243 126-582 1-254 (255)
6 cd07475 Peptidases_S8_C5a_Pept 100.0 1.8E-47 3.9E-52 417.9 28.7 311 125-614 2-346 (346)
7 cd07478 Peptidases_S8_CspA-lik 100.0 2.4E-47 5.1E-52 425.7 26.5 401 130-605 1-455 (455)
8 cd07489 Peptidases_S8_5 Peptid 100.0 5.3E-47 1.2E-51 407.8 27.9 293 123-617 3-301 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 3.2E-46 7E-51 390.2 25.6 246 125-583 2-254 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 5.1E-45 1.1E-49 389.9 30.3 290 132-612 1-295 (295)
11 cd07483 Peptidases_S8_Subtilis 100.0 1.6E-45 3.4E-50 391.1 24.8 270 133-579 1-291 (291)
12 cd05561 Peptidases_S8_4 Peptid 100.0 1.2E-45 2.6E-50 380.7 22.3 234 135-605 1-239 (239)
13 cd07493 Peptidases_S8_9 Peptid 100.0 1.9E-44 4.1E-49 378.1 24.7 243 134-579 1-261 (261)
14 KOG1153 Subtilisin-related pro 100.0 1.7E-45 3.7E-50 381.2 16.2 334 22-579 77-461 (501)
15 cd07481 Peptidases_S8_Bacillop 100.0 2.5E-44 5.5E-49 377.6 24.7 247 132-579 1-264 (264)
16 cd04857 Peptidases_S8_Tripepti 100.0 6.3E-44 1.4E-48 385.9 28.0 220 210-581 182-412 (412)
17 cd07485 Peptidases_S8_Fervidol 100.0 6.5E-44 1.4E-48 376.4 24.6 263 124-577 1-273 (273)
18 cd07487 Peptidases_S8_1 Peptid 100.0 4.6E-43 1E-47 368.7 25.5 256 132-579 1-264 (264)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 8.5E-43 1.8E-47 364.5 25.2 232 125-580 17-255 (255)
20 cd07484 Peptidases_S8_Thermita 100.0 2.2E-42 4.9E-47 362.5 25.2 241 122-581 18-259 (260)
21 cd04847 Peptidases_S8_Subtilis 100.0 9.5E-43 2.1E-47 371.0 19.7 262 136-579 2-291 (291)
22 cd07494 Peptidases_S8_10 Pepti 100.0 3.5E-42 7.7E-47 365.2 23.8 157 120-340 8-174 (298)
23 cd07496 Peptidases_S8_13 Pepti 100.0 7.3E-42 1.6E-46 363.1 25.0 207 208-577 66-285 (285)
24 cd07490 Peptidases_S8_6 Peptid 100.0 8.1E-42 1.8E-46 357.1 24.8 253 134-579 1-254 (254)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 1.7E-41 3.6E-46 362.5 25.5 277 128-579 2-293 (293)
26 cd07498 Peptidases_S8_15 Pepti 100.0 3.2E-41 6.9E-46 350.0 22.9 239 135-577 1-242 (242)
27 cd04843 Peptidases_S8_11 Pepti 100.0 4.2E-41 9.1E-46 353.0 21.8 246 121-579 3-277 (277)
28 cd07480 Peptidases_S8_12 Pepti 100.0 8.8E-41 1.9E-45 356.6 24.0 265 127-611 2-297 (297)
29 cd07473 Peptidases_S8_Subtilis 100.0 2.5E-40 5.5E-45 346.8 25.7 249 133-579 2-259 (259)
30 cd07477 Peptidases_S8_Subtilis 100.0 4.9E-40 1.1E-44 338.2 24.0 226 134-577 1-229 (229)
31 cd07491 Peptidases_S8_7 Peptid 100.0 3E-40 6.6E-45 340.9 19.8 156 132-339 2-170 (247)
32 PF00082 Peptidase_S8: Subtila 100.0 7.8E-41 1.7E-45 355.2 15.5 274 136-614 1-282 (282)
33 cd07482 Peptidases_S8_Lantibio 100.0 1E-39 2.2E-44 348.9 23.5 148 134-322 1-159 (294)
34 cd04059 Peptidases_S8_Protein_ 100.0 6.6E-40 1.4E-44 350.7 19.4 251 119-579 25-297 (297)
35 cd07492 Peptidases_S8_8 Peptid 100.0 5.6E-39 1.2E-43 328.5 23.2 221 134-579 1-222 (222)
36 cd04848 Peptidases_S8_Autotran 100.0 5E-38 1.1E-42 330.8 22.2 242 131-579 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 1.2E-37 2.6E-42 330.6 14.4 360 25-615 49-466 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 3E-32 6.6E-37 301.8 23.5 238 212-614 309-557 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 5.9E-33 1.3E-37 285.6 16.7 113 209-339 33-159 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 4.8E-31 1E-35 272.2 24.7 196 208-577 39-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 1.3E-23 2.8E-28 240.7 23.6 249 123-580 130-398 (508)
42 KOG3526 Subtilisin-like propro 99.9 5.3E-23 1.2E-27 208.5 11.9 158 119-321 147-316 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 8.7E-18 1.9E-22 183.7 14.1 101 240-343 82-199 (361)
44 cd02120 PA_subtilisin_like PA_ 99.3 1.4E-11 3.1E-16 114.1 13.0 123 348-473 2-125 (126)
45 cd02133 PA_C5a_like PA_C5a_lik 99.3 1.1E-11 2.4E-16 117.3 11.5 117 369-499 25-142 (143)
46 PF05922 Inhibitor_I9: Peptida 99.0 1.1E-09 2.4E-14 93.1 7.0 77 27-103 1-82 (82)
47 cd04816 PA_SaNapH_like PA_SaNa 98.8 9.5E-08 2.1E-12 87.8 12.8 99 370-472 17-120 (122)
48 cd02122 PA_GRAIL_like PA _GRAI 98.7 7.1E-08 1.5E-12 90.0 10.1 90 384-473 42-137 (138)
49 cd02129 PA_hSPPL_like PA_hSPPL 98.7 1.1E-07 2.4E-12 85.8 10.6 91 370-466 20-114 (120)
50 cd02127 PA_hPAP21_like PA_hPAP 98.7 1.2E-07 2.6E-12 86.0 10.4 88 386-474 21-116 (118)
51 cd04818 PA_subtilisin_1 PA_sub 98.7 1.1E-07 2.4E-12 86.8 9.9 89 384-473 25-117 (118)
52 PF02225 PA: PA domain; Inter 98.7 4.1E-08 8.8E-13 87.0 6.4 79 386-464 19-101 (101)
53 cd02126 PA_EDEM3_like PA_EDEM3 98.6 2.5E-07 5.5E-12 85.3 9.3 86 386-472 27-124 (126)
54 KOG3525 Subtilisin-like propro 98.6 1.2E-06 2.7E-11 97.0 16.4 161 119-323 19-189 (431)
55 cd02130 PA_ScAPY_like PA_ScAPY 98.5 3.8E-07 8.2E-12 83.8 9.4 96 370-473 22-121 (122)
56 cd00538 PA PA: Protease-associ 98.5 3.4E-07 7.4E-12 84.5 8.9 87 386-472 30-124 (126)
57 cd02124 PA_PoS1_like PA_PoS1_l 98.5 1.6E-06 3.4E-11 80.1 12.8 99 372-472 28-127 (129)
58 cd02125 PA_VSR PA_VSR: Proteas 98.5 8.8E-07 1.9E-11 81.5 10.9 89 385-473 21-126 (127)
59 cd02132 PA_GO-like PA_GO-like: 98.5 5.2E-07 1.1E-11 84.7 9.6 84 386-472 48-137 (139)
60 COG4934 Predicted protease [Po 98.5 1.6E-06 3.5E-11 103.1 15.2 94 241-337 288-395 (1174)
61 cd04817 PA_VapT_like PA_VapT_l 98.4 1.3E-06 2.9E-11 81.1 9.3 74 394-467 50-134 (139)
62 cd04813 PA_1 PA_1: Protease-as 98.4 1.3E-06 2.8E-11 79.1 8.9 80 385-466 26-111 (117)
63 cd02123 PA_C_RZF_like PA_C-RZF 98.3 2.2E-06 4.8E-11 81.7 9.5 84 386-469 50-142 (153)
64 PF06280 DUF1034: Fn3-like dom 98.3 8.7E-06 1.9E-10 73.6 11.2 83 674-757 8-112 (112)
65 cd04819 PA_2 PA_2: Protease-as 98.1 2.9E-05 6.3E-10 71.8 11.1 91 369-468 22-121 (127)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.5 0.00042 9.2E-09 64.6 8.0 78 395-472 34-132 (134)
67 cd02128 PA_TfR PA_TfR: Proteas 97.0 0.0017 3.6E-08 63.2 6.9 71 396-466 51-155 (183)
68 cd04814 PA_M28_1 PA_M28_1: Pro 96.9 0.0025 5.5E-08 59.5 6.8 63 370-435 20-100 (142)
69 cd04820 PA_M28_1_1 PA_M28_1_1: 96.7 0.0052 1.1E-07 57.0 7.0 64 370-436 22-97 (137)
70 PF14874 PapD-like: Flagellar- 96.5 0.053 1.2E-06 47.8 12.3 92 660-760 10-101 (102)
71 cd04822 PA_M28_1_3 PA_M28_1_3: 96.5 0.0083 1.8E-07 56.7 7.2 64 370-436 20-101 (151)
72 KOG2442 Uncharacterized conser 96.1 0.017 3.7E-07 62.8 8.2 79 396-474 91-175 (541)
73 PF10633 NPCBM_assoc: NPCBM-as 95.7 0.038 8.2E-07 46.2 7.0 61 673-733 4-65 (78)
74 cd02121 PA_GCPII_like PA_GCPII 95.4 0.032 6.9E-07 56.3 6.2 58 370-436 45-107 (220)
75 cd02131 PA_hNAALADL2_like PA_h 94.8 0.037 7.9E-07 51.8 4.2 40 397-436 37-76 (153)
76 KOG3920 Uncharacterized conser 94.0 0.071 1.5E-06 49.3 4.3 100 370-476 64-173 (193)
77 KOG4628 Predicted E3 ubiquitin 93.6 0.26 5.6E-06 52.7 8.2 82 386-467 62-150 (348)
78 PF11614 FixG_C: IG-like fold 92.8 0.92 2E-05 41.1 9.8 58 674-732 31-88 (118)
79 PF06030 DUF916: Bacterial pro 92.2 2.7 5.8E-05 38.4 11.8 78 665-746 18-119 (121)
80 cd04821 PA_M28_1_2 PA_M28_1_2: 91.7 0.71 1.5E-05 44.1 7.7 63 370-435 22-103 (157)
81 PF00345 PapD_N: Pili and flag 89.6 8 0.00017 35.1 12.6 53 675-729 15-74 (122)
82 COG1470 Predicted membrane pro 88.9 2.9 6.3E-05 46.1 10.3 71 673-745 396-467 (513)
83 KOG1114 Tripeptidyl peptidase 80.2 1.2 2.6E-05 52.7 2.7 49 708-761 636-689 (1304)
84 COG1470 Predicted membrane pro 76.9 27 0.0006 38.8 11.6 60 673-733 283-348 (513)
85 PF00635 Motile_Sperm: MSP (Ma 76.8 14 0.00031 32.5 8.2 54 674-730 18-71 (109)
86 TIGR02745 ccoG_rdxA_fixG cytoc 74.2 11 0.00024 42.3 8.2 57 674-731 346-402 (434)
87 PF07718 Coatamer_beta_C: Coat 70.9 33 0.00072 31.9 9.0 69 675-747 70-139 (140)
88 smart00635 BID_2 Bacterial Ig- 55.7 32 0.0007 28.7 5.7 41 703-750 4-44 (81)
89 PF07705 CARDB: CARDB; InterP 53.2 75 0.0016 27.0 7.9 53 673-729 18-72 (101)
90 PF07610 DUF1573: Protein of u 52.3 47 0.001 24.3 5.3 44 680-726 2-45 (45)
91 PF00927 Transglut_C: Transglu 51.0 1.3E+02 0.0028 26.4 9.2 56 673-730 14-78 (107)
92 PLN03080 Probable beta-xylosid 38.7 1E+02 0.0022 37.7 8.4 51 675-728 685-744 (779)
93 PF08821 CGGC: CGGC domain; I 37.7 1.6E+02 0.0036 26.1 7.5 66 242-313 31-104 (107)
94 PF02845 CUE: CUE domain; Int 36.2 35 0.00075 24.5 2.4 24 555-578 5-28 (42)
95 TIGR01451 B_ant_repeat conserv 36.0 1.7E+02 0.0036 22.3 6.3 39 673-713 11-50 (53)
96 PF12690 BsuPI: Intracellular 34.2 2.7E+02 0.0059 23.3 7.9 53 677-730 3-72 (82)
97 PRK15098 beta-D-glucoside gluc 30.5 1.1E+02 0.0024 37.3 7.0 53 674-729 667-728 (765)
98 PF08260 Kinin: Insect kinin p 30.4 22 0.00048 16.1 0.4 6 491-496 3-8 (8)
99 PF01345 DUF11: Domain of unkn 29.4 1.3E+02 0.0028 24.5 5.2 31 673-704 40-72 (76)
100 cd00407 Urease_beta Urease bet 29.2 99 0.0021 27.0 4.4 50 674-725 18-82 (101)
101 PRK13203 ureB urease subunit b 28.3 96 0.0021 27.1 4.2 50 674-725 18-82 (102)
102 PRK15019 CsdA-binding activato 26.4 56 0.0012 30.9 2.7 31 541-572 79-109 (147)
103 TIGR00192 urease_beta urease, 26.3 1.1E+02 0.0024 26.7 4.2 50 674-725 18-82 (101)
104 PRK13202 ureB urease subunit b 25.1 1.2E+02 0.0027 26.5 4.3 48 676-725 21-83 (104)
105 TIGR03391 FeS_syn_CsdE cystein 24.8 64 0.0014 30.2 2.7 32 540-572 73-104 (138)
106 PF04255 DUF433: Protein of un 24.2 61 0.0013 25.0 2.1 37 539-575 12-54 (56)
107 COG4856 Uncharacterized protei 24.1 2.9E+02 0.0064 30.2 7.8 53 676-729 92-147 (403)
108 PF00699 Urease_beta: Urease b 23.6 1.1E+02 0.0024 26.6 3.7 17 674-690 17-33 (100)
109 PF13940 Ldr_toxin: Toxin Ldr, 23.6 56 0.0012 22.2 1.5 13 546-558 14-26 (35)
110 PF08586 Rsc14: RSC complex, R 23.5 81 0.0017 27.3 2.8 71 550-622 6-79 (101)
111 PRK09296 cysteine desufuration 22.2 76 0.0017 29.6 2.7 31 541-572 69-99 (138)
112 PRK15308 putative fimbrial pro 21.6 3.1E+02 0.0068 28.1 7.3 53 675-728 32-100 (234)
113 smart00546 CUE Domain that may 21.6 1.2E+02 0.0027 21.7 3.2 25 554-578 5-29 (43)
114 PF15284 PAGK: Phage-encoded v 20.9 66 0.0014 25.2 1.6 14 1-14 1-16 (61)
115 COG2166 sufE Cysteine desulfur 20.7 79 0.0017 29.6 2.5 30 541-571 74-103 (144)
116 PF02657 SufE: Fe-S metabolism 20.5 91 0.002 28.6 2.8 33 540-573 59-91 (125)
117 PF05753 TRAP_beta: Translocon 20.3 6.3E+02 0.014 24.8 8.8 70 673-747 37-114 (181)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.8e-54 Score=459.56 Aligned_cols=306 Identities=60% Similarity=1.001 Sum_probs=263.0
Q ss_pred eccccCCCCcccccccCCCCCCCccccccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCC
Q 004261 100 YTLHTTRSPQFLGISSDFGLSAGYSKLDFDKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCN 179 (765)
Q Consensus 100 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n 179 (765)
+++++++++.|+++...+. ..+|..+.+|+||+|||||||||++||+|.+....+++..|.+.|..+..+....|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWG----GSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCN 76 (307)
T ss_pred CCccccCCHHHcCCCCCCC----cccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcC
Confidence 4688999999999998776 226889999999999999999999999999999999999999999999988888899
Q ss_pred ceeEeeeeccccccccCCCCCCCCCCCCCCCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccC
Q 004261 180 KKLIGARFFSKGYHMAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKT 259 (765)
Q Consensus 180 ~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~ 259 (765)
+|+++.++|.+++....... .+.+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++..
T Consensus 77 ~ki~g~~~~~~~~~~~~~~~--~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~ 154 (307)
T cd04852 77 NKLIGARYFSDGYDAYGGFN--SDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPD 154 (307)
T ss_pred CeEEEEEEcccchhhccCcc--cccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCC
Confidence 99999999998765443211 1334567889999999999999999887766666666778999999999999999884
Q ss_pred -CCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccC
Q 004261 260 -GCFGSDILAGIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTKASLANVAPWILTVGAG 338 (765)
Q Consensus 260 -g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs 338 (765)
.+..+++++||++|++++++|||||||........+.+..+++++.++|++||+||||+|+...+.++.+||+++|||.
T Consensus 155 ~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~ 234 (307)
T cd04852 155 GGCFGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAS 234 (307)
T ss_pred CCccHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEec
Confidence 4889999999999999999999999998764556678888888999999999999999998888888999999999971
Q ss_pred CCCCceeEEEEeCCceeEEeEeeccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhH
Q 004261 339 TLDRDFPAYVFLGNKKKATGVSLYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGA 418 (765)
Q Consensus 339 t~d~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~ 418 (765)
+
T Consensus 235 ~------------------------------------------------------------------------------- 235 (307)
T cd04852 235 T------------------------------------------------------------------------------- 235 (307)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHhhcCccEEEEeecCCCCccccccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCC
Q 004261 419 VVRDAGGVGMILANTAASGEELVADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPN 498 (765)
Q Consensus 419 ~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~ 498 (765)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcCCceeecCCcEEeeecCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcc
Q 004261 499 MVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTA 578 (765)
Q Consensus 499 ~~~~~~lKPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA 578 (765)
+||||+|||.+|++++..... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||
T Consensus 236 ------~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA 306 (307)
T cd04852 236 ------LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTA 306 (307)
T ss_pred ------CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhc
Confidence 467999999999999875311 11122234799999999999999999999999999999999999999998
Q ss_pred e
Q 004261 579 Y 579 (765)
Q Consensus 579 ~ 579 (765)
+
T Consensus 307 ~ 307 (307)
T cd04852 307 Y 307 (307)
T ss_pred C
Confidence 4
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=2.2e-50 Score=448.60 Aligned_cols=302 Identities=19% Similarity=0.215 Sum_probs=212.9
Q ss_pred ccccccCCCCCCCccccc--cCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeee
Q 004261 110 FLGISSDFGLSAGYSKLD--FDKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARF 187 (765)
Q Consensus 110 ~~g~~~~~~~~~~~~~~~--~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~ 187 (765)
.|+++... .+++|. .+.+|+||+|||||||||++||+|.+.-...+ ....|+ ..++. +++..+.
T Consensus 295 qWgLd~i~----~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~-~el~Gr----dgiDd--D~nG~vd--- 360 (639)
T PTZ00262 295 QWGLDLTR----LDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNV-KELHGR----KGIDD--DNNGNVD--- 360 (639)
T ss_pred CcCcchhC----chHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccccc-ccccCc----ccccc--ccCCccc---
Confidence 35555432 245665 35679999999999999999999985410000 000010 00100 1111110
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC-CChHHH
Q 004261 188 FSKGYHMAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-CFGSDI 266 (765)
Q Consensus 188 ~~~g~~~~~~~~~~~~~~~~~~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i 266 (765)
-..||++.++ ...|.|.+||||||||||||...++.+ +.||||+|+|+++|+++..| +..+++
T Consensus 361 d~~G~nfVd~--------~~~P~D~~GHGTHVAGIIAA~gnN~~G--------i~GVAP~AkLi~vKVld~~G~G~~sdI 424 (639)
T PTZ00262 361 DEYGANFVNN--------DGGPMDDNYHGTHVSGIISAIGNNNIG--------IVGVDKRSKLIICKALDSHKLGRLGDM 424 (639)
T ss_pred ccccccccCC--------CCCCCCCCCcchHHHHHHhccccCCCc--------eeeeecccccceEEEecCCCCccHHHH
Confidence 0112222211 235688999999999999998654322 47999999999999998877 888999
Q ss_pred HHHHHHHHhCCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCC--------------ccc----C
Q 004261 267 LAGIDRAIQDGVDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTKAS--------------LAN----V 328 (765)
Q Consensus 267 ~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~~----~ 328 (765)
++||+||++.|++|||||||+.. ....+..++.+|.++|++||+||||+|....+ ++. .
T Consensus 425 ~~AI~yA~~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~ 501 (639)
T PTZ00262 425 FKCFDYCISREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKK 501 (639)
T ss_pred HHHHHHHHHCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhcc
Confidence 99999999999999999999752 23456777889999999999999999864321 121 2
Q ss_pred CCceEEEccCCCCCceeEEEEeCCceeEEeEeeccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeC
Q 004261 329 APWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDR 408 (765)
Q Consensus 329 ap~vitVgAst~d~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~ 408 (765)
.|++|+|||...+..
T Consensus 502 ~~nVIaVGAv~~d~~----------------------------------------------------------------- 516 (639)
T PTZ00262 502 LRNVITVSNLIKDKN----------------------------------------------------------------- 516 (639)
T ss_pred CCCEEEEeeccCCCC-----------------------------------------------------------------
Confidence 456777776321110
Q ss_pred CCcchhhhhHHHhhcCccEEEEeecCCCCccccccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCe
Q 004261 409 GINARVEKGAVVRDAGGVGMILANTAASGEELVADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPV 488 (765)
Q Consensus 409 g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 488 (765)
..-.
T Consensus 517 ----------------------------------------------------------------------------~~~s 520 (639)
T PTZ00262 517 ----------------------------------------------------------------------------NQYS 520 (639)
T ss_pred ----------------------------------------------------------------------------Cccc
Confidence 0002
Q ss_pred eeeccCCCCCCCCCCCcCCceeecCCcEEeeecCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHH
Q 004261 489 VAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPS 568 (765)
Q Consensus 489 ~a~fSS~Gp~~~~~~~lKPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~ 568 (765)
.+.||++|.. ++||+|||++|+++++.+ .|..++|||||||||||+||||++++|+|+++
T Consensus 521 ~s~~Snyg~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~ 580 (639)
T PTZ00262 521 LSPNSFYSAK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYE 580 (639)
T ss_pred ccccccCCCC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHH
Confidence 3455666532 359999999999998865 79999999999999999999999999999999
Q ss_pred HHHHHHHhcceeccCCCCCCCCCCCCCCCCCCcCC-CcccCccccCCCCccc
Q 004261 569 AIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHG-SGHVNPQKAISPGLVY 619 (765)
Q Consensus 569 ~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G-~G~vd~~~Al~~glv~ 619 (765)
||+++|++||.++... +..+| .|+||+++|++..+-+
T Consensus 581 qV~~iL~~TA~~l~~~--------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 581 EVIRILKESIVQLPSL--------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHHHHHhCccCCCC--------------CCccccCcEEcHHHHHHHHHhc
Confidence 9999999999876321 11233 3899999999866644
No 3
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=5.7e-49 Score=411.98 Aligned_cols=270 Identities=24% Similarity=0.229 Sum_probs=202.4
Q ss_pred CCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCCCCC
Q 004261 129 DKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPES 208 (765)
Q Consensus 129 ~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~ 208 (765)
+++|+||+|||||||||.+||++.+...+.++..+ .+... ...
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~-----------------------~~~~~--------------~~~ 43 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNV-----------------------NVLGD--------------LDG 43 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcce-----------------------eeccc--------------cCC
Confidence 57899999999999999999965432211111111 11110 123
Q ss_pred CCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCCCChHHHHHHHHHHHhCCCcEEEeccCCC
Q 004261 209 PRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFGSDILAGIDRAIQDGVDVLSMSLGGG 288 (765)
Q Consensus 209 ~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 288 (765)
..|.++|||||||||+ ||||+|+|+.+|+. ...+++++||+|++++|++|||||||..
T Consensus 44 ~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~ 101 (275)
T cd05562 44 GSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYL 101 (275)
T ss_pred CCCCCchHHHHHHHHh------------------ccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEeccccc
Confidence 4578899999999993 89999999999874 3578899999999999999999999986
Q ss_pred CCCC-cccHHHHHHHHHHhC-CcEEEEecCCCCCCCC-CcccCCCceEEEccCCCCCceeEEEEeCCceeEEeEeeccCC
Q 004261 289 SAPY-YRDTIAVGAFAAMEK-GIVVSCSAGNSGPTKA-SLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYSGN 365 (765)
Q Consensus 289 ~~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgAst~d~~~~~~~~~~~g~~~~~~s~~~~~ 365 (765)
..+. ....+..++.++.++ |++||+||||+|.... ..++..|++|+|||.+.+.......
T Consensus 102 ~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s----------------- 164 (275)
T cd05562 102 NEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS----------------- 164 (275)
T ss_pred CCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc-----------------
Confidence 5443 234577777788887 9999999999998543 4567899999999965432210000
Q ss_pred CCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCccccccCc
Q 004261 366 GMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELVADSH 445 (765)
Q Consensus 366 ~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 445 (765)
|...
T Consensus 165 -----------------------~~~~----------------------------------------------------- 168 (275)
T cd05562 165 -----------------------DPAP----------------------------------------------------- 168 (275)
T ss_pred -----------------------cccc-----------------------------------------------------
Confidence 0000
Q ss_pred cccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCC-cEEeeecCCC
Q 004261 446 LLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGV-NILAAWTEAS 524 (765)
Q Consensus 446 ~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~-~I~sa~~~~~ 524 (765)
.......+.||++||+.+ +.+||||+|||. ++.+.+..+
T Consensus 169 -------------------------------------~~~~s~~~~~~~~~p~~~--~~~~~di~Apgg~~~~~~~~~~- 208 (275)
T cd05562 169 -------------------------------------GGTPSSFDPVGIRLPTPE--VRQKPDVTAPDGVNGTVDGDGD- 208 (275)
T ss_pred -------------------------------------CCCcccccCCcccCcCCC--CCcCCeEEcCCcccccCCCcCC-
Confidence 000013456788999876 789999999975 445544332
Q ss_pred CCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcceeccCCCCCCCCCCCCCCCCCCcCCC
Q 004261 525 GPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGS 604 (765)
Q Consensus 525 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~ 604 (765)
.|..++|||||||||||++|||+|++|+|+++|||++|++||+++.. +..+..|||
T Consensus 209 ------------~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~------------~g~d~~~G~ 264 (275)
T cd05562 209 ------------GPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE------------PGYDNASGS 264 (275)
T ss_pred ------------ceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC------------CCCCCCcCc
Confidence 78999999999999999999999999999999999999999987642 234568999
Q ss_pred cccCccccCC
Q 004261 605 GHVNPQKAIS 614 (765)
Q Consensus 605 G~vd~~~Al~ 614 (765)
|+||+.+|++
T Consensus 265 G~vda~~Av~ 274 (275)
T cd05562 265 GLVDADRAVA 274 (275)
T ss_pred CcccHHHHhh
Confidence 9999999986
No 4
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-48 Score=414.06 Aligned_cols=286 Identities=29% Similarity=0.346 Sum_probs=190.5
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCCCCCCCC
Q 004261 132 SLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRD 211 (765)
Q Consensus 132 G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~d 211 (765)
|+||+|||||||||++||+|.+.... .|.- .|+ .+ .++ ..+++.... ....+.|
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~------~~d--~~-~~~------~~g~d~~~~-------~~~~~~D 54 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKL------KFD--YK-AYL------LPGMDKWGG-------FYVIMYD 54 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccc------ccC--cC-CCc------cCCcCCCCC-------ccCCCCC
Confidence 79999999999999999999643100 0100 000 00 011 122222111 1134678
Q ss_pred CCCCchhhHHhhccCCCCccCccccc-CcceeeecCCCeEEEEEeeccCC-CChHHHHH-------HHHHH--HhCCCcE
Q 004261 212 YDGHGTHTASTAAGVPVANASLLGYA-SGVARGMATHARVATYKVCWKTG-CFGSDILA-------GIDRA--IQDGVDV 280 (765)
Q Consensus 212 ~~gHGThVAgi~Ag~~~~~~~~~G~~-~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~-------ai~~a--~~~g~dV 280 (765)
.+||||||||||||+.....+.+++. ...+.||||+|+|+.+|+|...+ .....+.+ +++|+ .+++++|
T Consensus 55 ~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V 134 (311)
T cd07497 55 FFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDV 134 (311)
T ss_pred ccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceE
Confidence 99999999999999865433322211 12358999999999999997544 33333333 34443 3689999
Q ss_pred EEeccCCCCCCCc-----ccHHHHHHHH-HHhCCcEEEEecCCCCCCCC--CcccCCCceEEEccCCCCCceeEEEEeCC
Q 004261 281 LSMSLGGGSAPYY-----RDTIAVGAFA-AMEKGIVVSCSAGNSGPTKA--SLANVAPWILTVGAGTLDRDFPAYVFLGN 352 (765)
Q Consensus 281 In~SlG~~~~~~~-----~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~--~~~~~ap~vitVgAst~d~~~~~~~~~~~ 352 (765)
||||||.....+. .+..+..... +.++|+++|+||||+|+... ..++.++++|+|||++..+..+...
T Consensus 135 IN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~---- 210 (311)
T cd07497 135 ISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL---- 210 (311)
T ss_pred EEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh----
Confidence 9999998532211 1222322222 24899999999999997643 4567889999999965321100000
Q ss_pred ceeEEeEeeccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEee
Q 004261 353 KKKATGVSLYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILAN 432 (765)
Q Consensus 353 g~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n 432 (765)
+.+
T Consensus 211 ---------------------~~~-------------------------------------------------------- 213 (311)
T cd07497 211 ---------------------FGY-------------------------------------------------------- 213 (311)
T ss_pred ---------------------hcc--------------------------------------------------------
Confidence 000
Q ss_pred cCCCCccccccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeec
Q 004261 433 TAASGEELVADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGP 512 (765)
Q Consensus 433 ~~~~~~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~AP 512 (765)
.....+.++.||||||+.+ +++||||+||
T Consensus 214 -------------------------------------------------~~~~~~~~~~fSs~Gp~~~--g~~kPdv~Ap 242 (311)
T cd07497 214 -------------------------------------------------LPGGSGDVVSWSSRGPSIA--GDPKPDLAAI 242 (311)
T ss_pred -------------------------------------------------ccCCCCCccccccCCCCcc--cCCCCceecc
Confidence 0011246899999999987 8999999999
Q ss_pred CCcEEeeecCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 004261 513 GVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHP------DWSPSAIKSALMTTA 578 (765)
Q Consensus 513 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P------~~sp~~ik~~L~~TA 578 (765)
|++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 243 G~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 243 GAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 999999876542100 011123699999999999999999999999986 589999999999997
No 5
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=2.4e-48 Score=404.44 Aligned_cols=243 Identities=24% Similarity=0.356 Sum_probs=196.6
Q ss_pred cccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCC
Q 004261 126 LDFDKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNE 205 (765)
Q Consensus 126 ~~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~ 205 (765)
|..+++|+||+|||||||||.+||+|.+. +...+|..
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~----------------------------~~~~~~~~--------------- 37 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV----------------------------KERTNWTN--------------- 37 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc----------------------------ccccccCC---------------
Confidence 88999999999999999999999999632 00011111
Q ss_pred CCCCCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC-CChHHHHHHHHHHHhCCCcEEEec
Q 004261 206 PESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-CFGSDILAGIDRAIQDGVDVLSMS 284 (765)
Q Consensus 206 ~~~~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S 284 (765)
.....|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ +..+.++++++||+++++||||||
T Consensus 38 ~~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S 106 (255)
T cd07479 38 EKTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLS 106 (255)
T ss_pred CCCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEee
Confidence 12345678999999999999742 137999999999999998876 667789999999999999999999
Q ss_pred cCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCC--CcccCCCceEEEccCCCCCceeEEEEeCCceeEEeEeec
Q 004261 285 LGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTKA--SLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLY 362 (765)
Q Consensus 285 lG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~ap~vitVgAst~d~~~~~~~~~~~g~~~~~~s~~ 362 (765)
||... +...++..++.++.++|++||+||||+|+... ..+...+++|+|||...
T Consensus 107 ~G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~---------------------- 162 (255)
T cd07479 107 IGGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF---------------------- 162 (255)
T ss_pred ccCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc----------------------
Confidence 99753 22345666677888999999999999997543 34567789999998321
Q ss_pred cCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCccccc
Q 004261 363 SGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELVA 442 (765)
Q Consensus 363 ~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 442 (765)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCC----CCCCcCCceeecCCcEEe
Q 004261 443 DSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMV----TPQILKPDVIGPGVNILA 518 (765)
Q Consensus 443 ~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~lKPDi~APG~~I~s 518 (765)
.+.++.|||+|++.. ..+++||||.|||.+|++
T Consensus 163 -------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~ 199 (255)
T cd07479 163 -------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYG 199 (255)
T ss_pred -------------------------------------------CCccccccCCCCCcccccCCCCCcCccEEecCCCeec
Confidence 125788999996521 137789999999999998
Q ss_pred eecCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhCC----CCCHHHHHHHHHhcceecc
Q 004261 519 AWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHP----DWSPSAIKSALMTTAYVVD 582 (765)
Q Consensus 519 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P----~~sp~~ik~~L~~TA~~~~ 582 (765)
+.... .|..++|||||||||||++|||+|++| .++|++||++|++||+++.
T Consensus 200 ~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 200 SKLKG-------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred cccCC-------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 76543 688999999999999999999999999 6899999999999999863
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=1.8e-47 Score=417.93 Aligned_cols=311 Identities=27% Similarity=0.347 Sum_probs=232.8
Q ss_pred ccccCC-CCCCcEEEEeccCCCCCCCCCCCCCCCCCCc-----ccccccccCCCCCCCCCCceeEeeeeccccccccCCC
Q 004261 125 KLDFDK-ASLDVIIGVLDTGVWPESKSFDDSAMPEVPT-----KWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGS 198 (765)
Q Consensus 125 ~~~~~~-~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~-----~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~ 198 (765)
+|+.+. +|+||+|+|||||||++||+|.+....+... .+...+.. -...+++.+++..++|.++.+.
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---- 74 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI---GYGKYYNEKVPFAYNYADNNDD---- 74 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC---CCCcccccCCCeeEcCCCCCCc----
Confidence 788887 9999999999999999999998764432211 11111111 1122567788888888774221
Q ss_pred CCCCCCCCCCCCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeecc--CC-CChHHHHHHHHHHHh
Q 004261 199 FSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWK--TG-CFGSDILAGIDRAIQ 275 (765)
Q Consensus 199 ~~~~~~~~~~~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~g-~~~~~i~~ai~~a~~ 275 (765)
.....|..+|||||||||+|...+..+ ...+.||||+|+|+.+|+++. .+ .....+++|++++++
T Consensus 75 -------~~~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~ 142 (346)
T cd07475 75 -------ILDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVK 142 (346)
T ss_pred -------cCCCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Confidence 122457889999999999998754321 123589999999999999974 33 778889999999999
Q ss_pred CCCcEEEeccCCCCCC-CcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCc----------------ccCCCceEEEccC
Q 004261 276 DGVDVLSMSLGGGSAP-YYRDTIAVGAFAAMEKGIVVSCSAGNSGPTKASL----------------ANVAPWILTVGAG 338 (765)
Q Consensus 276 ~g~dVIn~SlG~~~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~----------------~~~ap~vitVgAs 338 (765)
.+++|||||||..... .....+..++.++.++|++||+||||+|...... +...+++|+||+.
T Consensus 143 ~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~ 222 (346)
T cd07475 143 LGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASA 222 (346)
T ss_pred cCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeec
Confidence 9999999999987432 3455677778889999999999999998654321 2234455555552
Q ss_pred CCCCceeEEEEeCCceeEEeEeeccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhH
Q 004261 339 TLDRDFPAYVFLGNKKKATGVSLYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGA 418 (765)
Q Consensus 339 t~d~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~ 418 (765)
...
T Consensus 223 ~~~----------------------------------------------------------------------------- 225 (346)
T cd07475 223 NKK----------------------------------------------------------------------------- 225 (346)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 200
Q ss_pred HHhhcCccEEEEeecCCCCccccccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCC
Q 004261 419 VVRDAGGVGMILANTAASGEELVADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPN 498 (765)
Q Consensus 419 ~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~ 498 (765)
......+.++.||+|||+
T Consensus 226 --------------------------------------------------------------~~~~~~~~~~~~S~~G~~ 243 (346)
T cd07475 226 --------------------------------------------------------------VPNPNGGQMSGFSSWGPT 243 (346)
T ss_pred --------------------------------------------------------------cCCCCCCccCCCcCCCCC
Confidence 000122467899999999
Q ss_pred CCCCCCcCCceeecCCcEEeeecCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhh----CCCCCHHH----H
Q 004261 499 MVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAA----HPDWSPSA----I 570 (765)
Q Consensus 499 ~~~~~~lKPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~~sp~~----i 570 (765)
.. .++||||+|||.+|+++.... .|..++|||||||+|||++|||+|+ +|.|++.+ |
T Consensus 244 ~~--~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~i 308 (346)
T cd07475 244 PD--LDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLV 308 (346)
T ss_pred cc--cCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHH
Confidence 86 889999999999999987664 7899999999999999999999998 79999877 7
Q ss_pred HHHHHhcceeccCCCCCCCCCCCCCCCCCCcCCCcccCccccCC
Q 004261 571 KSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSGHVNPQKAIS 614 (765)
Q Consensus 571 k~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 614 (765)
|++|++||.+.... .....++.+.++|+|+||+.+||+
T Consensus 309 k~~l~~ta~~~~~~------~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 309 KNLLMNTATPPLDS------EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHhcCCccccc------CCCCccCCccccCcchhcHHHhhC
Confidence 88899999853211 123456777899999999999985
No 7
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=2.4e-47 Score=425.72 Aligned_cols=401 Identities=25% Similarity=0.283 Sum_probs=232.3
Q ss_pred CCCCCcEEEEeccCCCCCCCCCCCC-CCCCCCcccccccccCCCCCCCCCCceeEeeeeccc-cccccCCCCCCCCCCCC
Q 004261 130 KASLDVIIGVLDTGVWPESKSFDDS-AMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSK-GYHMAGGSFSKKPNEPE 207 (765)
Q Consensus 130 ~~G~gV~VaVIDtGid~~Hp~f~~~-~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~-g~~~~~~~~~~~~~~~~ 207 (765)
.+|+||+|||||||||+.||+|++. +.+++...|++....+..- ....+...+.. ..+...... .+.+..
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~--~p~~~~ 72 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAALASD--NPYDIV 72 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHHHhcC--CccccC
Confidence 4799999999999999999999854 6778999999877653221 11111111111 000000000 122334
Q ss_pred CCCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC-----------CChHHHHHHHHHHHhC
Q 004261 208 SPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-----------CFGSDILAGIDRAIQD 276 (765)
Q Consensus 208 ~~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~~~i~~ai~~a~~~ 276 (765)
...|..||||||||||||+..++.. +.||||+|+|+++|++...+ +..+++++||+|+++.
T Consensus 73 ~~~D~~GHGThvAGIiag~~~~~~~--------~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~ 144 (455)
T cd07478 73 PSRDENGHGTHVAGIAAGNGDNNPD--------FKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDK 144 (455)
T ss_pred cCCCCCCchHHHHHHHhcCCCCCCC--------ccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHH
Confidence 5678999999999999999765322 48999999999999998765 4678999999999974
Q ss_pred -----CCcEEEeccCCCCCC-CcccHHHHHHHHHHhC-CcEEEEecCCCCCCCCCcccC-CC------ceEEEccCCCCC
Q 004261 277 -----GVDVLSMSLGGGSAP-YYRDTIAVGAFAAMEK-GIVVSCSAGNSGPTKASLANV-AP------WILTVGAGTLDR 342 (765)
Q Consensus 277 -----g~dVIn~SlG~~~~~-~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~-ap------~vitVgAst~d~ 342 (765)
.+.|||||||....+ ...+.++.++..+..+ |++||+||||+|....+.... .+ --+.|+... +
T Consensus 145 a~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~--~ 222 (455)
T cd07478 145 ALELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE--K 222 (455)
T ss_pred HHHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC--c
Confidence 478999999986433 3456677777777665 999999999999865544321 00 112333211 1
Q ss_pred ceeE------------EEEeCCceeEEeEeeccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCe--EEEEeC
Q 004261 343 DFPA------------YVFLGNKKKATGVSLYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGK--VVICDR 408 (765)
Q Consensus 343 ~~~~------------~~~~~~g~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gk--ivl~~~ 408 (765)
.+.- .+.-..|+.......... ....+.+.+... ..|... ..+....|. |.+.
T Consensus 223 ~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~---~~~~~~~~~~~t-------~i~v~y-~~~~~~~g~~~i~i~-- 289 (455)
T cd07478 223 GFNLEIWGDFPDRFSVSIISPSGESSGRINPGIG---GSESYKFVFEGT-------TVYVYY-YLPEPYTGDQLIFIR-- 289 (455)
T ss_pred ceEEEEecCCCCEEEEEEECCCCCccCccCcCCC---cceeEEEEECCe-------EEEEEE-cCCCCCCCCeEEEEE--
Confidence 1110 011111111000000000 000011111000 000000 000111111 1111
Q ss_pred CCcchhhhhHHHhhcCccEEEEeecCCCCccccccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecce------Eec
Q 004261 409 GINARVEKGAVVRDAGGVGMILANTAASGEELVADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGT------VLN 482 (765)
Q Consensus 409 g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~------~~~ 482 (765)
.. .-..|++-+.-............++|.-.+...+. .++... +..++..+.+ +..
T Consensus 290 --------~~----~~~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t----~f~~~~--~~~tit~Pa~~~~vitVga 351 (455)
T cd07478 290 --------FK----NIKPGIWKIRLTGVSITDGRFDAWLPSRGLLSENT----RFLEPD--PYTTLTIPGTARSVITVGA 351 (455)
T ss_pred --------cc----CCCccceEEEEEeccCCCceEEEEecCcCcCCCCC----EeecCC--CCceEecCCCCCCcEEEEE
Confidence 00 01112221111100000001112333222211111 111222 2233333221 111
Q ss_pred cc-CCCeeeeccCCCCCCCCCCCcCCceeecCCcEEeeecCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhh
Q 004261 483 VR-PSPVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAA 561 (765)
Q Consensus 483 ~~-~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 561 (765)
.. ..+.++.||||||+.+ +++||||+|||++|+++++.+ .|..++|||||||||||++|||+|+
T Consensus 352 ~~~~~~~~~~~Ss~G~~~~--~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~ 416 (455)
T cd07478 352 YNQNNNSIAIFSGRGPTRD--GRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQW 416 (455)
T ss_pred EeCCCCcccCccCCCcCCC--CCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHh
Confidence 11 2346999999999987 899999999999999999865 7999999999999999999999997
Q ss_pred C------CCCCHHHHHHHHHhcceeccCCCCCCCCCCCCCCCCCCcCCCc
Q 004261 562 H------PDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSG 605 (765)
Q Consensus 562 ~------P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G 605 (765)
+ |.|++++||++|++||+++. ...+++++||||
T Consensus 417 ~~~~~~~p~~~~~~ik~~L~~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 417 GIVRGNDPYLYGEKIKTYLIRGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred chhccCCCCCCHHHHHHHHHHhCccCC-----------CCCCCCCCCCCC
Confidence 5 56799999999999999864 234677899998
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.3e-47 Score=407.76 Aligned_cols=293 Identities=33% Similarity=0.425 Sum_probs=229.3
Q ss_pred ccccccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeecccc-ccccCCCCCC
Q 004261 123 YSKLDFDKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKG-YHMAGGSFSK 201 (765)
Q Consensus 123 ~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g-~~~~~~~~~~ 201 (765)
+.+|..+++|+||+|||||+|||++||+|.+.-.+ +.++.+.++|... +.....
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~~~~~---- 57 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYDGTNP---- 57 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccccccC----
Confidence 45899999999999999999999999999753111 1123333344321 110010
Q ss_pred CCCCCCCCCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC-CChHHHHHHHHHHHhCCCcE
Q 004261 202 KPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-CFGSDILAGIDRAIQDGVDV 280 (765)
Q Consensus 202 ~~~~~~~~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dV 280 (765)
..+...+.|..||||||||||+|...+ .| +.||||+|+|+.+|+++..+ .....++++|++|++++++|
T Consensus 58 -~~~~~~~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~i 127 (312)
T cd07489 58 -PVPDDDPMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADV 127 (312)
T ss_pred -CCCCCCCCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCE
Confidence 122345667799999999999998654 22 48999999999999998766 66777899999999999999
Q ss_pred EEeccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCC---CcccCCCceEEEccCCCCCceeEEEEeCCceeEE
Q 004261 281 LSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTKA---SLANVAPWILTVGAGTLDRDFPAYVFLGNKKKAT 357 (765)
Q Consensus 281 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgAst~d~~~~~~~~~~~g~~~~ 357 (765)
||||||..... ..+.+...+.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 128 In~S~g~~~~~-~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------------ 188 (312)
T cd07489 128 ITASLGGPSGW-SEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------------ 188 (312)
T ss_pred EEeCCCcCCCC-CCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec------------------
Confidence 99999986432 2366777777888999999999999987543 3356678888888721
Q ss_pred eEeeccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCC
Q 004261 358 GVSLYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASG 437 (765)
Q Consensus 358 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 437 (765)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCCcEE
Q 004261 438 EELVADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNIL 517 (765)
Q Consensus 438 ~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~I~ 517 (765)
+.||++||+.+ ...||||+|||++++
T Consensus 189 ----------------------------------------------------~~~s~~g~~~~--~~~kpdv~ApG~~i~ 214 (312)
T cd07489 189 ----------------------------------------------------SYFSSWGPTNE--LYLKPDVAAPGGNIL 214 (312)
T ss_pred ----------------------------------------------------CCccCCCCCCC--CCcCccEEcCCCCEE
Confidence 46789999987 789999999999999
Q ss_pred eeecCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhC-CCCCHHHHHHHHHhcceeccCCCCCCCCCCCCCC
Q 004261 518 AAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAH-PDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRL 596 (765)
Q Consensus 518 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~ 596 (765)
++++...+ .|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++...+.... ...+
T Consensus 215 ~~~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~---~~~~ 280 (312)
T cd07489 215 STYPLAGG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSA---LPDL 280 (312)
T ss_pred EeeeCCCC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCcc---ccCC
Confidence 99887633 58999999999999999999999999 999999999999999998764332111 1124
Q ss_pred CCCCcCCCcccCccccCCCCc
Q 004261 597 STPWAHGSGHVNPQKAISPGL 617 (765)
Q Consensus 597 ~~~~~~G~G~vd~~~Al~~gl 617 (765)
++..++|||+||+.+|++..-
T Consensus 281 ~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 281 APVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred CCHhhcCcceeeHHHHhcCCc
Confidence 667799999999999999543
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=3.2e-46 Score=390.21 Aligned_cols=246 Identities=24% Similarity=0.325 Sum_probs=202.2
Q ss_pred ccccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCC
Q 004261 125 KLDFDKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPN 204 (765)
Q Consensus 125 ~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~ 204 (765)
+|..+++|+||+|||||+|||++||+|.+....+. ..+..
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~--------------------------~~~~~-------------- 41 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL--------------------------FTYAA-------------- 41 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc--------------------------cCccc--------------
Confidence 79999999999999999999999999975421110 00000
Q ss_pred CCCCCCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC--CChHHHHHHHHHHHhCCCcEEE
Q 004261 205 EPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG--CFGSDILAGIDRAIQDGVDVLS 282 (765)
Q Consensus 205 ~~~~~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn 282 (765)
......|..+|||||||||+|+..+ .+.||||+|+|+.+|++...+ ++..++++||+||+++|+||||
T Consensus 42 ~~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN 111 (267)
T cd07476 42 AACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIIN 111 (267)
T ss_pred cCCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEE
Confidence 0123456789999999999987532 147999999999999997664 4577899999999999999999
Q ss_pred eccCCCCC-CCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccCCCCCceeEEEEeCCceeEEeEee
Q 004261 283 MSLGGGSA-PYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTKASLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSL 361 (765)
Q Consensus 283 ~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~g~~~~~~s~ 361 (765)
||||.... ......+..++.+|.++|++||+||||+|.....+++..|++|+|||...
T Consensus 112 ~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------- 170 (267)
T cd07476 112 ISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD--------------------- 170 (267)
T ss_pred ecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC---------------------
Confidence 99997532 23355678888889999999999999999887788888999999998321
Q ss_pred ccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCcccc
Q 004261 362 YSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELV 441 (765)
Q Consensus 362 ~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 441 (765)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCCcEEeeec
Q 004261 442 ADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWT 521 (765)
Q Consensus 442 ~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~I~sa~~ 521 (765)
.+.++.||++|+.. .||||+|||.+|+++.+
T Consensus 171 --------------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~ 201 (267)
T cd07476 171 --------------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAAL 201 (267)
T ss_pred --------------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecC
Confidence 02456899999864 37899999999999987
Q ss_pred CCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhCCC----CCHHHHHHHHHhcceeccC
Q 004261 522 EASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPD----WSPSAIKSALMTTAYVVDN 583 (765)
Q Consensus 522 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~----~sp~~ik~~L~~TA~~~~~ 583 (765)
.+ .|..++|||||||||||++|||+|++|. ++|++||++|++||+++..
T Consensus 202 ~~-------------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 202 GG-------------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred CC-------------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 65 7899999999999999999999999887 8999999999999998854
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.1e-45 Score=389.87 Aligned_cols=290 Identities=35% Similarity=0.501 Sum_probs=217.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccc-cCCCCCCCCCCCCCCC
Q 004261 132 SLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHM-AGGSFSKKPNEPESPR 210 (765)
Q Consensus 132 G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~-~~~~~~~~~~~~~~~~ 210 (765)
|+||+|||||+|||++||+|.+.. ..+.++...++|...... ................
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999997531 123455666665542111 0000000000112345
Q ss_pred CCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC-CChHHHHHHHHHHHhCCCcEEEeccCCCC
Q 004261 211 DYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-CFGSDILAGIDRAIQDGVDVLSMSLGGGS 289 (765)
Q Consensus 211 d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 289 (765)
|..+|||||||+|+|...+.. .+.|+||+|+|+.+|+++..+ +...++++||+|+++++++|||||||...
T Consensus 60 ~~~~HGT~vAgiiag~~~n~~--------~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~ 131 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVNVG--------TIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV 131 (295)
T ss_pred CCCCcHHHHHHHHhcCCCccC--------ceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 688999999999999865422 248999999999999998555 78889999999999999999999999764
Q ss_pred CCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--ccCCCceEEEccCCCCCceeEEEEeCCceeEEeEeeccCCCC
Q 004261 290 APYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTKASL--ANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYSGNGM 367 (765)
Q Consensus 290 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVgAst~d~~~~~~~~~~~g~~~~~~s~~~~~~~ 367 (765)
.. ..+.+..++.++.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 132 ~~-~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~------------------------ 186 (295)
T cd07474 132 NG-PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV------------------------ 186 (295)
T ss_pred CC-CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc------------------------
Confidence 32 345677788889999999999999998765543 567889999998431000
Q ss_pred CCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCccccccCccc
Q 004261 368 GNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELVADSHLL 447 (765)
Q Consensus 368 ~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ 447 (765)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCC-CCCCCCCCCcCCceeecCCcEEeeecCCCCC
Q 004261 448 PAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSR-GPNMVTPQILKPDVIGPGVNILAAWTEASGP 526 (765)
Q Consensus 448 p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~-Gp~~~~~~~lKPDi~APG~~I~sa~~~~~~~ 526 (765)
........|+++ |+... ..+||||+|||++|++++.....
T Consensus 187 ------------------------------------~~~~~~~~~~s~~~~~~~--~~~kpdv~apG~~i~~~~~~~~~- 227 (295)
T cd07474 187 ------------------------------------AEADTVGPSSSRGPPTSD--SAIKPDIVAPGVDIMSTAPGSGT- 227 (295)
T ss_pred ------------------------------------CCCCceeccCCCCCCCCC--CCcCCCEECCcCceEeeccCCCC-
Confidence 000123344454 55544 78999999999999999876422
Q ss_pred CCcccCccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcceeccCCCCCCCCCCCCCCCCCCcCCCcc
Q 004261 527 TELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSGH 606 (765)
Q Consensus 527 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~ 606 (765)
.|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ...++..+|+|+
T Consensus 228 ----------~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~~~~~G~G~ 289 (295)
T cd07474 228 ----------GYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYPVSRQGAGR 289 (295)
T ss_pred ----------ceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCChhccCcce
Confidence 78999999999999999999999999999999999999999998754332 122456899999
Q ss_pred cCcccc
Q 004261 607 VNPQKA 612 (765)
Q Consensus 607 vd~~~A 612 (765)
||+.+|
T Consensus 290 l~~~~A 295 (295)
T cd07474 290 VDALRA 295 (295)
T ss_pred eccccC
Confidence 999987
No 11
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=1.6e-45 Score=391.08 Aligned_cols=270 Identities=25% Similarity=0.372 Sum_probs=190.2
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCCCC-CcccccccccCCCCCCCCCCceeEeeeecccccccc----CCCCC-----CC
Q 004261 133 LDVIIGVLDTGVWPESKSFDDSAMPEV-PTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMA----GGSFS-----KK 202 (765)
Q Consensus 133 ~gV~VaVIDtGid~~Hp~f~~~~~~~~-~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~----~~~~~-----~~ 202 (765)
|+|+|||||||||++||+|++...... ....+|.-..+.+|.. + +.+++|...+... +...+ ..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~d-----d-~~g~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYID-----D-VNGWNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccc-----c-ccCeeccCCcccccccccCcccccccccc
Confidence 689999999999999999986411100 0001111112222211 1 2344444311100 00000 00
Q ss_pred CCCCCCCCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCCCChHHHHHHHHHHHhCCCcEEE
Q 004261 203 PNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFGSDILAGIDRAIQDGVDVLS 282 (765)
Q Consensus 203 ~~~~~~~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn 282 (765)
..+...+.+..+|||||||||||...+.. | +.||||+|+|+.+|++.......+++++||+||+++|++|||
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~~---g-----~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN 146 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNGI---G-----IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVIN 146 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCCC---c-----eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEE
Confidence 11233456789999999999999865432 2 489999999999999865447778899999999999999999
Q ss_pred eccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCC---cc--------cCCCceEEEccCCCCCceeEEEEeC
Q 004261 283 MSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTKAS---LA--------NVAPWILTVGAGTLDRDFPAYVFLG 351 (765)
Q Consensus 283 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~--------~~ap~vitVgAst~d~~~~~~~~~~ 351 (765)
||||..... ..+.+..++.+|.++|+++|+||||+|..... ++ ...+++|+|||.....
T Consensus 147 ~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~--------- 216 (291)
T cd07483 147 MSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY--------- 216 (291)
T ss_pred eCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC---------
Confidence 999975332 23456677778899999999999999964321 11 1235666666532110
Q ss_pred CceeEEeEeeccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEe
Q 004261 352 NKKKATGVSLYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILA 431 (765)
Q Consensus 352 ~g~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~ 431 (765)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCccccccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceee
Q 004261 432 NTAASGEELVADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIG 511 (765)
Q Consensus 432 n~~~~~~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~A 511 (765)
....++.||++|+. +|||+|
T Consensus 217 -----------------------------------------------------~~~~~~~~Sn~G~~-------~vdi~A 236 (291)
T cd07483 217 -----------------------------------------------------ENNLVANFSNYGKK-------NVDVFA 236 (291)
T ss_pred -----------------------------------------------------CcccccccCCCCCC-------ceEEEe
Confidence 01146889999974 359999
Q ss_pred cCCcEEeeecCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcce
Q 004261 512 PGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTAY 579 (765)
Q Consensus 512 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 579 (765)
||.+|+++.+.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 237 PG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 237 PGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred CCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999997765 7999999999999999999999999999999999999999984
No 12
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-45 Score=380.71 Aligned_cols=234 Identities=26% Similarity=0.392 Sum_probs=190.6
Q ss_pred cEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCCCCCCCCCCC
Q 004261 135 VIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRDYDG 214 (765)
Q Consensus 135 V~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~d~~g 214 (765)
|+|||||||||++||+|.+. ++..+++.. ....|..+
T Consensus 1 V~VavIDsGvd~~hp~l~~~---------------------------~~~~~~~~~----------------~~~~~~~~ 37 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAV---------------------------VIARLFFAG----------------PGAPAPSA 37 (239)
T ss_pred CEEEEEeCCCCCCCcccccC---------------------------ccccccCCC----------------CCCCCCCC
Confidence 78999999999999999643 111111111 13456789
Q ss_pred CchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC----CChHHHHHHHHHHHhCCCcEEEeccCCCCC
Q 004261 215 HGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG----CFGSDILAGIDRAIQDGVDVLSMSLGGGSA 290 (765)
Q Consensus 215 HGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g----~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 290 (765)
|||||||||+|+.... .|+||+|+|+.+|++...+ ++..++++||+||++.+++|||||||+..
T Consensus 38 HGT~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~- 105 (239)
T cd05561 38 HGTAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP- 105 (239)
T ss_pred CHHHHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-
Confidence 9999999999985321 5999999999999998642 67788999999999999999999999743
Q ss_pred CCcccHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcccCCCceEEEccCCCCCceeEEEEeCCceeEEeEeeccCCCCCC
Q 004261 291 PYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTK-ASLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYSGNGMGN 369 (765)
Q Consensus 291 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAst~d~~~~~~~~~~~g~~~~~~s~~~~~~~~~ 369 (765)
...+..++.++.++|++||+||||+|+.. ..+++..+++|+||+...
T Consensus 106 ---~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~----------------------------- 153 (239)
T cd05561 106 ---NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA----------------------------- 153 (239)
T ss_pred ---CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC-----------------------------
Confidence 34566777789999999999999999764 356778899999987321
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCccccccCccccE
Q 004261 370 KPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELVADSHLLPA 449 (765)
Q Consensus 370 ~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~ 449 (765)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCCcEEeeecCCCCCCCc
Q 004261 450 VAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTEL 529 (765)
Q Consensus 450 ~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~I~sa~~~~~~~~~~ 529 (765)
.+.++.||++|+.. ||+|||.+|+++.+.+
T Consensus 154 ------------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~------ 183 (239)
T cd05561 154 ------------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPGG------ 183 (239)
T ss_pred ------------------------------------CCCccccCCCCCcc--------eEEccccceecccCCC------
Confidence 12467899999865 9999999999976654
Q ss_pred ccCccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcceeccCCCCCCCCCCCCCCCCCCcCCCc
Q 004261 530 EKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSG 605 (765)
Q Consensus 530 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G 605 (765)
.|..++|||||||||||++|||+|++| ++++|||++|++||+++. .+..+..||||
T Consensus 184 -------~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g------------~~~~d~~~G~G 239 (239)
T cd05561 184 -------GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLG------------PPGRDPVFGYG 239 (239)
T ss_pred -------CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccC------------CCCcCCCcCCC
Confidence 799999999999999999999999999 999999999999998764 33455689998
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-44 Score=378.06 Aligned_cols=243 Identities=32% Similarity=0.381 Sum_probs=195.6
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 004261 134 DVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRDYD 213 (765)
Q Consensus 134 gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~d~~ 213 (765)
||+||||||||+++||+|.... ..++.++.+.++|.+.. .....|.+
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~--------------------~~~~~~i~~~~~~~~~~-------------~~~~~~~~ 47 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH--------------------LFKNLRILGEYDFVDNS-------------NNTNYTDD 47 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc--------------------cccCCceeeeecCccCC-------------CCCCCCCC
Confidence 7999999999999999994210 11345677777776521 01136788
Q ss_pred CCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC---CChHHHHHHHHHHHhCCCcEEEeccCCCCC
Q 004261 214 GHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG---CFGSDILAGIDRAIQDGVDVLSMSLGGGSA 290 (765)
Q Consensus 214 gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 290 (765)
+|||||||||+|+.. +.+.||||+|+|+.+|+..... ....+++.|++|+.+.+++|||||||....
T Consensus 48 ~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~ 117 (261)
T cd07493 48 DHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTF 117 (261)
T ss_pred CchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCC
Confidence 999999999999753 2258999999999999875432 345678899999999999999999998643
Q ss_pred CCc------------ccHHHHHHHHHHhCCcEEEEecCCCCCC---CCCcccCCCceEEEccCCCCCceeEEEEeCCcee
Q 004261 291 PYY------------RDTIAVGAFAAMEKGIVVSCSAGNSGPT---KASLANVAPWILTVGAGTLDRDFPAYVFLGNKKK 355 (765)
Q Consensus 291 ~~~------------~~~~~~a~~~a~~~Gi~vV~AAGN~G~~---~~~~~~~ap~vitVgAst~d~~~~~~~~~~~g~~ 355 (765)
... ...+..++..+.++|+++|+||||+|.. ....+...+++|+|||...
T Consensus 118 ~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~--------------- 182 (261)
T cd07493 118 DNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA--------------- 182 (261)
T ss_pred CCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc---------------
Confidence 211 2356677788899999999999999977 3466778899999998311
Q ss_pred EEeEeeccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCC
Q 004261 356 ATGVSLYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAA 435 (765)
Q Consensus 356 ~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 435 (765)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCCc
Q 004261 436 SGEELVADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVN 515 (765)
Q Consensus 436 ~~~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~ 515 (765)
.+.++.||++||+.+ +++||||+|||.+
T Consensus 183 --------------------------------------------------~~~~~~~S~~G~~~~--~~~~pdi~a~G~~ 210 (261)
T cd07493 183 --------------------------------------------------NGNKASFSSIGPTAD--GRLKPDVMALGTG 210 (261)
T ss_pred --------------------------------------------------CCCCCccCCcCCCCC--CCcCCceEecCCC
Confidence 124678999999886 8999999999999
Q ss_pred EEeeecCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcce
Q 004261 516 ILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTAY 579 (765)
Q Consensus 516 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 579 (765)
|++..... .|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 211 ~~~~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 211 IYVINGDG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred eEEEcCCC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99854433 7899999999999999999999999999999999999999985
No 14
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-45 Score=381.21 Aligned_cols=334 Identities=28% Similarity=0.434 Sum_probs=262.4
Q ss_pred cCCCceEEEEecCCCCCCcccchhHHHHHhhccccC--CC----------------CceEEEEc---ceeeEEEEEcCHH
Q 004261 22 TAAKQTYIVHMKHQAKPSTFSTHNDWYASSVQSLSS--ST----------------DSLLYTYN---TAYNGFAASLDPD 80 (765)
Q Consensus 22 ~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------------~~~~~~y~---~~~~g~s~~l~~~ 80 (765)
+..+.+|||.|++......++.|.+|++...+.... .. ..+.+.|. .+|+|+.-.++.+
T Consensus 77 ~~~~~~YiV~f~~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~ 156 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGE 156 (501)
T ss_pred cccccceEEEeCCCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccc
Confidence 556889999999777766777787777654332110 00 01333333 3778888899999
Q ss_pred HHHHHHcCCCeEEEEEcceecccc-----CCCCcccccccCCCCCCC-cccc----ccCCCCCCcEEEEeccCCCCCCCC
Q 004261 81 QAQALRQSDAVLGVYEDTLYTLHT-----TRSPQFLGISSDFGLSAG-YSKL----DFDKASLDVIIGVLDTGVWPESKS 150 (765)
Q Consensus 81 ~~~~L~~~p~V~~v~~~~~~~~~~-----~~s~~~~g~~~~~~~~~~-~~~~----~~~~~G~gV~VaVIDtGid~~Hp~ 150 (765)
-+..++++|-++.++++..+.... .+....|||.++.+..+. -..| .....|+||...|+||||+.+||+
T Consensus 157 ~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~d 236 (501)
T KOG1153|consen 157 SVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPD 236 (501)
T ss_pred eeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccccc
Confidence 999999999999999998877754 455566888877652211 0111 223479999999999999999999
Q ss_pred CCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCCCCCCCCCCCCchhhHHhhccCCCCc
Q 004261 151 FDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVAN 230 (765)
Q Consensus 151 f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~d~~gHGThVAgi~Ag~~~~~ 230 (765)
|.++ +.| |..+.. .....|++||||||||+|++..
T Consensus 237 FegR------a~w------Ga~i~~------------------------------~~~~~D~nGHGTH~AG~I~sKt--- 271 (501)
T KOG1153|consen 237 FEGR------AIW------GATIPP------------------------------KDGDEDCNGHGTHVAGLIGSKT--- 271 (501)
T ss_pred cccc------eec------ccccCC------------------------------CCcccccCCCcceeeeeeeccc---
Confidence 9865 223 111110 1335789999999999999874
Q ss_pred cCcccccCcceeeecCCCeEEEEEeeccCC-CChHHHHHHHHHHHhC---------CCcEEEeccCCCCCCCcccHHHHH
Q 004261 231 ASLLGYASGVARGMATHARVATYKVCWKTG-CFGSDILAGIDRAIQD---------GVDVLSMSLGGGSAPYYRDTIAVG 300 (765)
Q Consensus 231 ~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~---------g~dVIn~SlG~~~~~~~~~~~~~a 300 (765)
.|||.+++|+++||++++| +..+++++++|++++. +..|.|||+|+..+ -++..|
T Consensus 272 -----------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S----~aLn~A 336 (501)
T KOG1153|consen 272 -----------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRS----AALNMA 336 (501)
T ss_pred -----------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCccc----HHHHHH
Confidence 6999999999999999999 9999999999999986 56799999999654 466777
Q ss_pred HHHHHhCCcEEEEecCCCCCCCC-CcccCCCceEEEccCCCCCceeEEEEeCCceeEEeEeeccCCCCCCeeEEEEEecC
Q 004261 301 AFAAMEKGIVVSCSAGNSGPTKA-SLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYSGNGMGNKPVSLVYNKG 379 (765)
Q Consensus 301 ~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgAst~d~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~v~~~~ 379 (765)
+.+|.+.||++++||||+..+.| +.|+++..+|||||++..
T Consensus 337 V~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~-------------------------------------- 378 (501)
T KOG1153|consen 337 VNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN-------------------------------------- 378 (501)
T ss_pred HHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc--------------------------------------
Confidence 78999999999999999998877 556889999999996431
Q ss_pred CCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCccccccCccccEEEEchhhHHH
Q 004261 380 SNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELVADSHLLPAVAIGRKMGDI 459 (765)
Q Consensus 380 ~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~~~~ 459 (765)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCCcEEeeecCCCCCCCcccCccceeeE
Q 004261 460 VREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFN 539 (765)
Q Consensus 460 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 539 (765)
+.+|.||+||++. ||.|||++|+|+|.+... .-.
T Consensus 379 ---------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~-----------at~ 412 (501)
T KOG1153|consen 379 ---------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN-----------ATA 412 (501)
T ss_pred ---------------------------cchhhhcCcccee--------eeecCchhhhhhhhcCcc-----------chh
Confidence 3689999999998 999999999999998643 678
Q ss_pred EeccccchhhhhhhHHHHHHhhCCC---------CCHHHHHHHHHhcce
Q 004261 540 IMSGTSMSCPHLSGVAALLKAAHPD---------WSPSAIKSALMTTAY 579 (765)
Q Consensus 540 ~~sGTSmAaP~VAG~aALl~~~~P~---------~sp~~ik~~L~~TA~ 579 (765)
++||||||+|||||++|..++++|. .||.++|..+..=..
T Consensus 413 ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 413 ILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred eeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 9999999999999999999999883 388888877766544
No 15
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=2.5e-44 Score=377.63 Aligned_cols=247 Identities=31% Similarity=0.382 Sum_probs=194.7
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCCCCCCCC
Q 004261 132 SLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRD 211 (765)
Q Consensus 132 G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~d 211 (765)
|+||+||||||||+++||+|.+. |++.... ++...+.+.+ . ......+.|
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~-----------~~~~~~~~~d------~-----~~~~~~~~d 50 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG-----------SADHDYNWFD------P-----VGNTPLPYD 50 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC-----------Cccccccccc------C-----CCCCCCCCC
Confidence 89999999999999999999764 1111000 0000000111 0 011244567
Q ss_pred CCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCCCChHHHHHHHHHHHh------------CCCc
Q 004261 212 YDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFGSDILAGIDRAIQ------------DGVD 279 (765)
Q Consensus 212 ~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~------------~g~d 279 (765)
..+|||||||||+|..... ...||||+|+|+.+|+++..++...+++++++++++ .+++
T Consensus 51 ~~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 121 (264)
T cd07481 51 DNGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPD 121 (264)
T ss_pred CCCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCe
Confidence 8899999999999875432 127999999999999998877888899999999975 7899
Q ss_pred EEEeccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCC---CcccCCCceEEEccCCCCCceeEEEEeCCceeE
Q 004261 280 VLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTKA---SLANVAPWILTVGAGTLDRDFPAYVFLGNKKKA 356 (765)
Q Consensus 280 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgAst~d~~~~~~~~~~~g~~~ 356 (765)
|||||||.... ....+..++..+.++|++||+||||+|.... ..++..|++|+|||.+.
T Consensus 122 Iin~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~---------------- 183 (264)
T cd07481 122 VINNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR---------------- 183 (264)
T ss_pred EEEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC----------------
Confidence 99999998643 2345556666788899999999999986544 25677889999998321
Q ss_pred EeEeeccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCC
Q 004261 357 TGVSLYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAAS 436 (765)
Q Consensus 357 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 436 (765)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCCcE
Q 004261 437 GEELVADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNI 516 (765)
Q Consensus 437 ~~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~I 516 (765)
.+.++.||++||... +++||||+|||.+|
T Consensus 184 -------------------------------------------------~~~~~~~S~~g~~~~--~~~~~dv~ApG~~i 212 (264)
T cd07481 184 -------------------------------------------------NDVLADFSSRGPSTY--GRIKPDISAPGVNI 212 (264)
T ss_pred -------------------------------------------------CCCCccccCCCCCCC--CCcCceEEECCCCe
Confidence 125688999999986 88999999999999
Q ss_pred EeeecCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhCCC--CCHHHHHHHHHhcce
Q 004261 517 LAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPD--WSPSAIKSALMTTAY 579 (765)
Q Consensus 517 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~--~sp~~ik~~L~~TA~ 579 (765)
+++++.+ .|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 213 ~s~~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 213 RSAVPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred EEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 9998774 7899999999999999999999999999 999999999999985
No 16
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=6.3e-44 Score=385.87 Aligned_cols=220 Identities=26% Similarity=0.311 Sum_probs=165.3
Q ss_pred CCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC---CChHHHHHHHHHHHhCCCcEEEeccC
Q 004261 210 RDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG---CFGSDILAGIDRAIQDGVDVLSMSLG 286 (765)
Q Consensus 210 ~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIn~SlG 286 (765)
.|+.+|||||||||||+..++. .+.||||+|+|+++|+++... +...++++||++|++.+++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~~--------~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEEP--------ERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCCC--------ceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 4788999999999999854332 248999999999999986542 23457899999999999999999999
Q ss_pred CCCCCCcccHHHHHHHH-HHhCCcEEEEecCCCCCCCCCcc--c-CCCceEEEccCCCCCceeEEEEeCCceeEEeEeec
Q 004261 287 GGSAPYYRDTIAVGAFA-AMEKGIVVSCSAGNSGPTKASLA--N-VAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLY 362 (765)
Q Consensus 287 ~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~--~-~ap~vitVgAst~d~~~~~~~~~~~g~~~~~~s~~ 362 (765)
..........+..++.+ +.++|+++|+||||+|+..+++. + .++++|+|||........+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~--------------- 318 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE--------------- 318 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc---------------
Confidence 86432212233333333 45789999999999998776543 2 46899999994321100000
Q ss_pred cCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCccccc
Q 004261 363 SGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELVA 442 (765)
Q Consensus 363 ~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 442 (765)
| .
T Consensus 319 -------------y------------~----------------------------------------------------- 320 (412)
T cd04857 319 -------------Y------------S----------------------------------------------------- 320 (412)
T ss_pred -------------c------------c-----------------------------------------------------
Confidence 0 0
Q ss_pred cCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCCcEEeeecC
Q 004261 443 DSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTE 522 (765)
Q Consensus 443 ~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~I~sa~~~ 522 (765)
......+.++.||||||+.+ +.+||||+|||+.|.+.-..
T Consensus 321 --------------------------------------~~~~~~~~~~~fSSrGP~~d--G~~~pdI~APG~~I~s~p~~ 360 (412)
T cd04857 321 --------------------------------------LREKLPGNQYTWSSRGPTAD--GALGVSISAPGGAIASVPNW 360 (412)
T ss_pred --------------------------------------cccccCCccccccccCCccc--CCcCceEEeCCCcEEEcccC
Confidence 00011236789999999997 89999999999999875221
Q ss_pred CCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHh----hCCCCCHHHHHHHHHhcceec
Q 004261 523 ASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKA----AHPDWSPSAIKSALMTTAYVV 581 (765)
Q Consensus 523 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~sp~~ik~~L~~TA~~~ 581 (765)
.. ..|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 361 ~~-----------~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 361 TL-----------QGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CC-----------CCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 11 1689999999999999999999985 478999999999999999864
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=6.5e-44 Score=376.40 Aligned_cols=263 Identities=27% Similarity=0.372 Sum_probs=200.6
Q ss_pred cccccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCC
Q 004261 124 SKLDFDKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKP 203 (765)
Q Consensus 124 ~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~ 203 (765)
++|..+++|+||+|+|||||||++||+|.+.... ..+ ..+...+...... .
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~-------------~~~------------~~~~~~~~~~~~~----~ 51 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG-------------DGY------------DPAVNGYNFVPNV----G 51 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC-------------CCc------------ccccCCccccccc----C
Confidence 3799999999999999999999999999865110 000 0001111100000 0
Q ss_pred CCCCCCCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC-CChHHHHHHHHHHHhCCCcEEE
Q 004261 204 NEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-CFGSDILAGIDRAIQDGVDVLS 282 (765)
Q Consensus 204 ~~~~~~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn 282 (765)
.......|..||||||||||+|+..+....-|++ .+.|+||+|+|+.+|++...+ +...++++||+|+++.+++|||
T Consensus 52 ~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin 129 (273)
T cd07485 52 DIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQ 129 (273)
T ss_pred CcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEE
Confidence 0113446778999999999999765433222222 235799999999999998765 7788899999999999999999
Q ss_pred eccCCCCCCCcccHHHHHHHHHHhC-------CcEEEEecCCCCCCCCCcccCCCceEEEccCCCCCceeEEEEeCCcee
Q 004261 283 MSLGGGSAPYYRDTIAVGAFAAMEK-------GIVVSCSAGNSGPTKASLANVAPWILTVGAGTLDRDFPAYVFLGNKKK 355 (765)
Q Consensus 283 ~SlG~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~g~~ 355 (765)
||||......+...+..++..+.++ |++||+||||+|......++..+++|+||+.+.
T Consensus 130 ~S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~--------------- 194 (273)
T cd07485 130 NSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT--------------- 194 (273)
T ss_pred ecCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC---------------
Confidence 9999865333455666777778777 999999999999887777888899999998321
Q ss_pred EEeEeeccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCC
Q 004261 356 ATGVSLYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAA 435 (765)
Q Consensus 356 ~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 435 (765)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCC-
Q 004261 436 SGEELVADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGV- 514 (765)
Q Consensus 436 ~~~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~- 514 (765)
.+.++.||++|+.. ||+|||.
T Consensus 195 --------------------------------------------------~~~~~~~S~~g~~~--------~i~apG~~ 216 (273)
T cd07485 195 --------------------------------------------------NDNKASFSNYGRWV--------DIAAPGVG 216 (273)
T ss_pred --------------------------------------------------CCCcCccccCCCce--------EEEeCCCC
Confidence 12467899999875 9999999
Q ss_pred cEEeeecCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhCCC-CCHHHHHHHHHhc
Q 004261 515 NILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPD-WSPSAIKSALMTT 577 (765)
Q Consensus 515 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~-~sp~~ik~~L~~T 577 (765)
.|+++++.... .....|..++|||||||+|||++|||+|++|. ++|.|||++|++|
T Consensus 217 ~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 217 TILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred ccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 89888765411 11227899999999999999999999999999 9999999999986
No 18
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.6e-43 Score=368.72 Aligned_cols=256 Identities=35% Similarity=0.503 Sum_probs=202.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCCCCCCCC
Q 004261 132 SLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRD 211 (765)
Q Consensus 132 G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~d 211 (765)
|+||+|+|||+||+++||+|.+.... .+.+.... .......|
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~---------------------------~~~~~~~~-----------~~~~~~~d 42 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR---------------------------FADFVNTV-----------NGRTTPYD 42 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc---------------------------cccccccc-----------cCCCCCCC
Confidence 89999999999999999999754211 00111000 01234567
Q ss_pred CCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC-CChHHHHHHHHHHHhC----CCcEEEeccC
Q 004261 212 YDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-CFGSDILAGIDRAIQD----GVDVLSMSLG 286 (765)
Q Consensus 212 ~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~dVIn~SlG 286 (765)
..+|||||||+|+|...+. .+.+.||||+|+|+.+|+++..+ ...+++++||+|+++. +++|||||||
T Consensus 43 ~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g 115 (264)
T cd07487 43 DNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLG 115 (264)
T ss_pred CCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccC
Confidence 7899999999999986542 12248999999999999998877 7788999999999998 9999999999
Q ss_pred CCCC-CCcccHHHHHHHHHHhCCcEEEEecCCCCCCCC--CcccCCCceEEEccCCCCCceeEEEEeCCceeEEeEeecc
Q 004261 287 GGSA-PYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTKA--SLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYS 363 (765)
Q Consensus 287 ~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~ap~vitVgAst~d~~~~~~~~~~~g~~~~~~s~~~ 363 (765)
.... ....+.+..++.++.++|++||+||||+|.... ..++..+++|+|||...+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~-------------------- 175 (264)
T cd07487 116 APPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP-------------------- 175 (264)
T ss_pred CCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC--------------------
Confidence 8743 345667888888999999999999999998775 56678899999998433211
Q ss_pred CCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCcccccc
Q 004261 364 GNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELVAD 443 (765)
Q Consensus 364 ~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 443 (765)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCCcEEeeecCC
Q 004261 444 SHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEA 523 (765)
Q Consensus 444 ~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~I~sa~~~~ 523 (765)
....++.||++||+.+ +++||||+|||.+|+++.+..
T Consensus 176 -----------------------------------------~~~~~~~~s~~G~~~~--~~~~~di~apG~~i~~~~~~~ 212 (264)
T cd07487 176 -----------------------------------------HDDGISYFSSRGPTGD--GRIKPDVVAPGENIVSCRSPG 212 (264)
T ss_pred -----------------------------------------CCccccccccCCCCCC--CCcCCCEEccccceEeccccc
Confidence 0014688999999987 899999999999999986543
Q ss_pred CCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcce
Q 004261 524 SGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTAY 579 (765)
Q Consensus 524 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 579 (765)
... .......|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 213 ~~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 213 GNP----GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ccc----CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 110 1112237899999999999999999999999999999999999999984
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=8.5e-43 Score=364.53 Aligned_cols=232 Identities=36% Similarity=0.501 Sum_probs=193.6
Q ss_pred ccccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCC
Q 004261 125 KLDFDKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPN 204 (765)
Q Consensus 125 ~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~ 204 (765)
.|..+++|+||+|||||+||+++||+|.+. +...++|...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------------
Confidence 677789999999999999999999999643 2222233221
Q ss_pred CCCCCCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC-CChHHHHHHHHHHHhC-----CC
Q 004261 205 EPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-CFGSDILAGIDRAIQD-----GV 278 (765)
Q Consensus 205 ~~~~~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~-----g~ 278 (765)
....|..+|||||||||+++. .||||+|+|+.+|+++..+ ...++++++++|++++ ++
T Consensus 57 --~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~ 120 (255)
T cd04077 57 --DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKP 120 (255)
T ss_pred --CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCC
Confidence 125678899999999999863 6999999999999998876 7778899999999987 48
Q ss_pred cEEEeccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcccCCCceEEEccCCCCCceeEEEEeCCceeEE
Q 004261 279 DVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTK-ASLANVAPWILTVGAGTLDRDFPAYVFLGNKKKAT 357 (765)
Q Consensus 279 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAst~d~~~~~~~~~~~g~~~~ 357 (765)
+|||||||... ...+..++.++.++|+++|+||||+|... ...++..|++|+||+.+.+
T Consensus 121 ~iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~---------------- 180 (255)
T cd04077 121 AVANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD---------------- 180 (255)
T ss_pred eEEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC----------------
Confidence 99999999864 34566677788999999999999999766 4567788999999984321
Q ss_pred eEeeccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCC
Q 004261 358 GVSLYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASG 437 (765)
Q Consensus 358 ~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 437 (765)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCCcEE
Q 004261 438 EELVADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNIL 517 (765)
Q Consensus 438 ~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~I~ 517 (765)
+..+.||++||.. ||+|||.+|.
T Consensus 181 -------------------------------------------------~~~~~~S~~g~~~--------~i~apG~~i~ 203 (255)
T cd04077 181 -------------------------------------------------DARASFSNYGSCV--------DIFAPGVDIL 203 (255)
T ss_pred -------------------------------------------------CCccCcccCCCCC--------cEEeCCCCeE
Confidence 1357899999976 8999999999
Q ss_pred eeecCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccee
Q 004261 518 AAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTAYV 580 (765)
Q Consensus 518 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~ 580 (765)
++...... .|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 204 ~~~~~~~~-----------~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 204 SAWIGSDT-----------ATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred ecccCCCC-----------cEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 98774322 78999999999999999999999999999999999999999974
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=2.2e-42 Score=362.48 Aligned_cols=241 Identities=34% Similarity=0.439 Sum_probs=200.2
Q ss_pred CccccccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCC
Q 004261 122 GYSKLDFDKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSK 201 (765)
Q Consensus 122 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~ 201 (765)
...+|..+ +|+||+|+|||+||+++||+|... ++...+++.++
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~---------- 60 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDN---------- 60 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCC----------
Confidence 36689888 999999999999999999998422 22223333221
Q ss_pred CCCCCCCCCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC-CChHHHHHHHHHHHhCCCcE
Q 004261 202 KPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-CFGSDILAGIDRAIQDGVDV 280 (765)
Q Consensus 202 ~~~~~~~~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dV 280 (765)
...+.|..+|||||||||++...+.. .+.|+||+|+|+.+|+++..+ +...++++||+++++.+++|
T Consensus 61 ----~~~~~d~~~HGT~vagii~~~~~~~~--------~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~i 128 (260)
T cd07484 61 ----DSDAMDDNGHGTHVAGIIAAATNNGT--------GVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKV 128 (260)
T ss_pred ----CCCCCCCCCcHHHHHHHHhCccCCCC--------ceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeE
Confidence 12356778999999999998754332 148999999999999998766 78889999999999999999
Q ss_pred EEeccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccCCCCCceeEEEEeCCceeEEeEe
Q 004261 281 LSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTKASLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVS 360 (765)
Q Consensus 281 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~g~~~~~~s 360 (765)
||||||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 129 in~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------- 186 (260)
T cd07484 129 INLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------------------- 186 (260)
T ss_pred EEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC-------------------
Confidence 999999864 3455677777888999999999999999888899999999999983211
Q ss_pred eccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCccc
Q 004261 361 LYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEEL 440 (765)
Q Consensus 361 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 440 (765)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCCcEEeee
Q 004261 441 VADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAW 520 (765)
Q Consensus 441 ~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~I~sa~ 520 (765)
+..+.||++|+.. |++|||.+|++..
T Consensus 187 ----------------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~ 212 (260)
T cd07484 187 ----------------------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTT 212 (260)
T ss_pred ----------------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeec
Confidence 2456889999765 9999999999987
Q ss_pred cCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcceec
Q 004261 521 TEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTAYVV 581 (765)
Q Consensus 521 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~ 581 (765)
+.. .|..++|||||||+|||++||+++++| |++.+||++|++||+++
T Consensus 213 ~~~-------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 213 PDG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CCC-------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 664 789999999999999999999999999 99999999999999865
No 21
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.5e-43 Score=371.00 Aligned_cols=262 Identities=27% Similarity=0.256 Sum_probs=185.0
Q ss_pred EEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCCCCCCCCCCCC
Q 004261 136 IIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRDYDGH 215 (765)
Q Consensus 136 ~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~d~~gH 215 (765)
+|||||||||.+||+|.+. +.....+.. ....+.|..||
T Consensus 2 ~VaviDtGi~~~hp~l~~~---------------------------~~~~~~~~~--------------~~~~~~d~~gH 40 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPA---------------------------LAEDDLDSD--------------EPGWTADDLGH 40 (291)
T ss_pred EEEEecCCCCCCChhhhhh---------------------------hcccccccc--------------CCCCcCCCCCC
Confidence 7999999999999999743 111111111 00115688999
Q ss_pred chhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC-----CChHHHHHHHHHHHhCC---CcEEEeccCC
Q 004261 216 GTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-----CFGSDILAGIDRAIQDG---VDVLSMSLGG 287 (765)
Q Consensus 216 GThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----~~~~~i~~ai~~a~~~g---~dVIn~SlG~ 287 (765)
||||||||++...... ...|+||+|+|+.+|++...| ....++++||+|+++.+ ++|||||||.
T Consensus 41 GT~vAgiia~~~~~~~--------~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~ 112 (291)
T cd04847 41 GTAVAGLALYGDLTLP--------GNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGS 112 (291)
T ss_pred hHHHHHHHHcCcccCC--------CCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCC
Confidence 9999999997643311 137999999999999998763 56678999999999853 5999999998
Q ss_pred CCCCCcc--cHHHHHHH-HHHhCCcEEEEecCCCCCCCCC------------cccCCCceEEEccCCCCCceeEEEEeCC
Q 004261 288 GSAPYYR--DTIAVGAF-AAMEKGIVVSCSAGNSGPTKAS------------LANVAPWILTVGAGTLDRDFPAYVFLGN 352 (765)
Q Consensus 288 ~~~~~~~--~~~~~a~~-~a~~~Gi~vV~AAGN~G~~~~~------------~~~~ap~vitVgAst~d~~~~~~~~~~~ 352 (765)
....... ..+..++. .+.++|++||+||||+|..... .++.++++|+|||.+.+......
T Consensus 113 ~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~----- 187 (291)
T cd04847 113 PLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR----- 187 (291)
T ss_pred CCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc-----
Confidence 6432211 23444443 3568999999999999987653 24567899999996543321000
Q ss_pred ceeEEeEeeccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEee
Q 004261 353 KKKATGVSLYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILAN 432 (765)
Q Consensus 353 g~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n 432 (765)
...
T Consensus 188 ------------------------------------s~~----------------------------------------- 190 (291)
T cd04847 188 ------------------------------------ARY----------------------------------------- 190 (291)
T ss_pred ------------------------------------ccc-----------------------------------------
Confidence 000
Q ss_pred cCCCCccccccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeec
Q 004261 433 TAASGEELVADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGP 512 (765)
Q Consensus 433 ~~~~~~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~AP 512 (765)
+.......+.||+|||... +.+||||+||
T Consensus 191 -------------------------------------------------~~~~~~~~~~fs~~Gp~~~--~~~KPDl~ap 219 (291)
T cd04847 191 -------------------------------------------------SAVGPAPAGATTSSGPGSP--GPIKPDVVAF 219 (291)
T ss_pred -------------------------------------------------cccccccCCCccccCCCCC--CCcCCcEEee
Confidence 0000012334999999987 8999999999
Q ss_pred CCcEEeeecCCCCC-----CCcccCccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcce
Q 004261 513 GVNILAAWTEASGP-----TELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTAY 579 (765)
Q Consensus 513 G~~I~sa~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 579 (765)
|++|.+..+..... ...........|..++|||||||||||++|||++++|+++|++||++|++||+
T Consensus 220 G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 220 GGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 99998764421100 00000112237999999999999999999999999999999999999999984
No 22
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.5e-42 Score=365.22 Aligned_cols=157 Identities=22% Similarity=0.260 Sum_probs=121.5
Q ss_pred CCCccccccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCC
Q 004261 120 SAGYSKLDFDKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSF 199 (765)
Q Consensus 120 ~~~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~ 199 (765)
++...+|..+++|+||+||||||||+..|| |...++ .+ ++ .+..+
T Consensus 8 l~~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~---------------~~----~~~~~-------- 52 (298)
T cd07494 8 LNATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QV---------------RV----VLAPG-------- 52 (298)
T ss_pred cChhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------cc---------------ee----ecCCC--------
Confidence 445679999999999999999999999998 653311 00 00 00000
Q ss_pred CCCCCCCCCCCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCCCChHHHHHHHHHHHhCCCc
Q 004261 200 SKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFGSDILAGIDRAIQDGVD 279 (765)
Q Consensus 200 ~~~~~~~~~~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~d 279 (765)
......|.+|||||||+++ .||||+|+|+.+|++++ ..+++++||+||++++++
T Consensus 53 -----~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~d 106 (298)
T cd07494 53 -----ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPD 106 (298)
T ss_pred -----CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCC
Confidence 1123567889999999865 59999999999999864 567789999999999999
Q ss_pred EEEeccCCCCCC----------CcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccCCC
Q 004261 280 VLSMSLGGGSAP----------YYRDTIAVGAFAAMEKGIVVSCSAGNSGPTKASLANVAPWILTVGAGTL 340 (765)
Q Consensus 280 VIn~SlG~~~~~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~ 340 (765)
|||||||..... .....+..++.+|.++|++||+||||++. .+++..|++|+|||++.
T Consensus 107 VIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~ 174 (298)
T cd07494 107 IISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFV 174 (298)
T ss_pred EEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEec
Confidence 999999985321 12345777888899999999999999874 56899999999999643
No 23
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.3e-42 Score=363.09 Aligned_cols=207 Identities=31% Similarity=0.453 Sum_probs=167.3
Q ss_pred CCCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCCCChHHHHHHHHHHH----------hCC
Q 004261 208 SPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFGSDILAGIDRAI----------QDG 277 (765)
Q Consensus 208 ~~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~----------~~g 277 (765)
...+..+|||||||||||...++. | +.||||+|+|+.+|+++..+...+++++|++|++ .++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~~---~-----~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~ 137 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNGV---G-----VAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNP 137 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCCC---C-----ceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCC
Confidence 456778999999999999865332 2 3799999999999999887778899999999998 457
Q ss_pred CcEEEeccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcccCCCceEEEccCCCCCceeEEEEeCCceeE
Q 004261 278 VDVLSMSLGGGSAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTK-ASLANVAPWILTVGAGTLDRDFPAYVFLGNKKKA 356 (765)
Q Consensus 278 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAst~d~~~~~~~~~~~g~~~ 356 (765)
++|||||||..... ...+..++..+.++|++||+||||+|... ..+++..+++|+|||.+.
T Consensus 138 ~~Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------------- 199 (285)
T cd07496 138 AKVINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL---------------- 199 (285)
T ss_pred CeEEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC----------------
Confidence 89999999986432 34667777788999999999999999876 567788899999998321
Q ss_pred EeEeeccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCC
Q 004261 357 TGVSLYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAAS 436 (765)
Q Consensus 357 ~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 436 (765)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCCcE
Q 004261 437 GEELVADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNI 516 (765)
Q Consensus 437 ~~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~I 516 (765)
.+.++.||++|+.. ||+|||++|
T Consensus 200 -------------------------------------------------~~~~~~~S~~g~~v--------di~apG~~i 222 (285)
T cd07496 200 -------------------------------------------------RGQRASYSNYGPAV--------DVSAPGGDC 222 (285)
T ss_pred -------------------------------------------------CCCcccccCCCCCC--------CEEeCCCCc
Confidence 12567899999976 999999999
Q ss_pred EeeecCCCCCC--CcccCccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhc
Q 004261 517 LAAWTEASGPT--ELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTT 577 (765)
Q Consensus 517 ~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~T 577 (765)
.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 223 ASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred cccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 98876532110 00011122378999999999999999999999999999999999999986
No 24
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.1e-42 Score=357.11 Aligned_cols=253 Identities=35% Similarity=0.434 Sum_probs=187.0
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 004261 134 DVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRDYD 213 (765)
Q Consensus 134 gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~d~~ 213 (765)
||+|||||||||++||+|.+. +...++|.... ........|..
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~~----------~~~~~~~~d~~ 43 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDENR----------RISATEVFDAG 43 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCCC----------CCCCCCCCCCC
Confidence 799999999999999999753 11112222110 01123456778
Q ss_pred CCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCc
Q 004261 214 GHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFGSDILAGIDRAIQDGVDVLSMSLGGGSAPYY 293 (765)
Q Consensus 214 gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~ 293 (765)
+|||||||||+|+..+ +...||||+|+|+.+|++...++..+++++||+|+++.+++|||||||.....
T Consensus 44 ~HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~-- 112 (254)
T cd07490 44 GHGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS-- 112 (254)
T ss_pred CcHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--
Confidence 9999999999998652 12479999999999999987778889999999999999999999999986433
Q ss_pred ccHHHHHHHHHHh-CCcEEEEecCCCCCCCCCcccCCCceEEEccCCCCCceeEEEEeCCceeEEeEeeccCCCCCCeeE
Q 004261 294 RDTIAVGAFAAME-KGIVVSCSAGNSGPTKASLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYSGNGMGNKPV 372 (765)
Q Consensus 294 ~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~ 372 (765)
.+.+..++..+.+ +|++||+||||+|......++..+++|+|||.+.+........
T Consensus 113 ~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~----------------------- 169 (254)
T cd07490 113 EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS----------------------- 169 (254)
T ss_pred CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccC-----------------------
Confidence 3445544444443 6999999999999887788889999999999643221000000
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCccccccCccccEEEE
Q 004261 373 SLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELVADSHLLPAVAI 452 (765)
Q Consensus 373 ~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v 452 (765)
+
T Consensus 170 ----------------~--------------------------------------------------------------- 170 (254)
T cd07490 170 ----------------F--------------------------------------------------------------- 170 (254)
T ss_pred ----------------C---------------------------------------------------------------
Confidence 0
Q ss_pred chhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCCcEEeeecCCCCCCCcccC
Q 004261 453 GRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKD 532 (765)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~I~sa~~~~~~~~~~~~~ 532 (765)
.......++.+|... ....|||+.|||.+|+++.....
T Consensus 171 ---------------------------------g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~~-------- 208 (254)
T cd07490 171 ---------------------------------GSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGAN-------- 208 (254)
T ss_pred ---------------------------------cccccccccCCCCCc-cCCcCceEEeccCCeEccccCCC--------
Confidence 001122233344332 25689999999999998652211
Q ss_pred ccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcce
Q 004261 533 TRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTAY 579 (765)
Q Consensus 533 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 579 (765)
....|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 209 -~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 209 -GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred -CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 1227999999999999999999999999999999999999999984
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=1.7e-41 Score=362.47 Aligned_cols=277 Identities=30% Similarity=0.375 Sum_probs=200.6
Q ss_pred cCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCCCC
Q 004261 128 FDKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPE 207 (765)
Q Consensus 128 ~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~ 207 (765)
++++|+||+|||||||||++||+|.+... .+.. ..++++.....+..
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~----------------- 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD----------------- 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC-----------------
Confidence 57899999999999999999999976421 0011 12344443333221
Q ss_pred CCCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC--CChHHHHHHHHHHHhCCCcEEEecc
Q 004261 208 SPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG--CFGSDILAGIDRAIQDGVDVLSMSL 285 (765)
Q Consensus 208 ~~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~Sl 285 (765)
...|..+|||||||||+|+..+..... .+.||||+|+|+.+|+++..+ ....++..+++++.+.+++||||||
T Consensus 49 ~~~d~~~HGT~vAgiia~~~~~~~~~~-----~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~ 123 (293)
T cd04842 49 TKDDVDGHGTHVAGIIAGKGNDSSSIS-----LYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSW 123 (293)
T ss_pred CCCCCCCCcchhheeeccCCcCCCccc-----ccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccC
Confidence 122789999999999999875543111 248999999999999998765 5667788999999999999999999
Q ss_pred CCCCCCCcccHHHHHHHHHH-h-CCcEEEEecCCCCCCCC---CcccCCCceEEEccCCCCCceeEEEEeCCceeEEeEe
Q 004261 286 GGGSAPYYRDTIAVGAFAAM-E-KGIVVSCSAGNSGPTKA---SLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVS 360 (765)
Q Consensus 286 G~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgAst~d~~~~~~~~~~~g~~~~~~s 360 (765)
|......+ .....++.++. + +|++||+||||+|.... ..++.++++|+|||.+......
T Consensus 124 G~~~~~~~-~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~--------------- 187 (293)
T cd04842 124 GSPVNNGY-TLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN--------------- 187 (293)
T ss_pred CCCCcccc-chHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc---------------
Confidence 98754211 22333333332 3 89999999999997765 6678899999999965433200
Q ss_pred eccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCccc
Q 004261 361 LYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEEL 440 (765)
Q Consensus 361 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 440 (765)
...|..
T Consensus 188 -------------------------~~~~~~------------------------------------------------- 193 (293)
T cd04842 188 -------------------------GEGGLG------------------------------------------------- 193 (293)
T ss_pred -------------------------cccccc-------------------------------------------------
Confidence 000000
Q ss_pred cccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCCcEEeee
Q 004261 441 VADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAW 520 (765)
Q Consensus 441 ~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~I~sa~ 520 (765)
.......++.||++||+.. +++||||+|||++|+++.
T Consensus 194 -----------------------------------------~~~~~~~~~~~S~~G~~~~--~~~~pdv~ApG~~i~~~~ 230 (293)
T cd04842 194 -----------------------------------------QSDNSDTVASFSSRGPTYD--GRIKPDLVAPGTGILSAR 230 (293)
T ss_pred -----------------------------------------ccCCCCccccccCcCCCCC--CCcCCCEECCCCCeEecc
Confidence 0011236899999999986 899999999999999987
Q ss_pred cCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhC-----C---CCCHHHHHHHHHhcce
Q 004261 521 TEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAH-----P---DWSPSAIKSALMTTAY 579 (765)
Q Consensus 521 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----P---~~sp~~ik~~L~~TA~ 579 (765)
..... ........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 231 ~~~~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 231 SGGGG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCCC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 54300 011122378999999999999999999999985 4 6677899999999985
No 26
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.2e-41 Score=349.95 Aligned_cols=239 Identities=31% Similarity=0.437 Sum_probs=188.0
Q ss_pred cEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCCCCCCCCCCC
Q 004261 135 VIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRDYDG 214 (765)
Q Consensus 135 V~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~d~~g 214 (765)
|+|||||+||+++||+|.+.. +++..+.+.. . .....|..+
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~------~--------~~~~~~~~~ 41 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVS------N--------NDPTSDIDG 41 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccC------C--------CCCCCCCCC
Confidence 789999999999999997520 0111111111 0 123467889
Q ss_pred CchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCC-CC
Q 004261 215 HGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-CFGSDILAGIDRAIQDGVDVLSMSLGGGSA-PY 292 (765)
Q Consensus 215 HGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~-~~ 292 (765)
|||||||||+|+..+.. .+.||||+|+|+.+|+++..+ +..+++.++++|+++.+++|||||||.... ..
T Consensus 42 HGT~vAgiiag~~~~~~--------~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~ 113 (242)
T cd07498 42 HGTACAGVAAAVGNNGL--------GVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTES 113 (242)
T ss_pred CHHHHHHHHHhccCCCc--------eeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCch
Confidence 99999999999864322 248999999999999998765 778889999999999999999999998643 23
Q ss_pred cccHHHHHHHHHHh-CCcEEEEecCCCCCCCCCcccCCCceEEEccCCCCCceeEEEEeCCceeEEeEeeccCCCCCCee
Q 004261 293 YRDTIAVGAFAAME-KGIVVSCSAGNSGPTKASLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYSGNGMGNKP 371 (765)
Q Consensus 293 ~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~ 371 (765)
....+..++.++.+ +|+++|+||||+|......++..+++|+|||.+.+
T Consensus 114 ~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------------ 163 (242)
T cd07498 114 ISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN------------------------------ 163 (242)
T ss_pred HHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC------------------------------
Confidence 35567777778888 99999999999998877778889999999984311
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCccccccCccccEEE
Q 004261 372 VSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELVADSHLLPAVA 451 (765)
Q Consensus 372 ~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~ 451 (765)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCCcEEeeecCCCCCCCccc
Q 004261 452 IGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEK 531 (765)
Q Consensus 452 v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~I~sa~~~~~~~~~~~~ 531 (765)
+.++.||++||.. |++|||.++.......... .
T Consensus 164 -----------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~ 196 (242)
T cd07498 164 -----------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----G 196 (242)
T ss_pred -----------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----c
Confidence 2467899999976 9999999998875442110 1
Q ss_pred CccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhc
Q 004261 532 DTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTT 577 (765)
Q Consensus 532 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~T 577 (765)
+.....|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 197 ~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 197 DYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred cCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 1122378899999999999999999999999999999999999976
No 27
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.2e-41 Score=352.95 Aligned_cols=246 Identities=21% Similarity=0.220 Sum_probs=176.8
Q ss_pred CCccccccCC-CCCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCC
Q 004261 121 AGYSKLDFDK-ASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSF 199 (765)
Q Consensus 121 ~~~~~~~~~~-~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~ 199 (765)
++.++|+... .|+||+|+|||+|||.+||+|.++... +..
T Consensus 3 ~~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~------------------------------~~~--------- 43 (277)
T cd04843 3 NARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT------------------------------LIS--------- 43 (277)
T ss_pred ChHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc------------------------------ccC---------
Confidence 3456887744 489999999999999999999753110 000
Q ss_pred CCCCCCCCCCCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCCCChHHHHHHHHHHHh----
Q 004261 200 SKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFGSDILAGIDRAIQ---- 275 (765)
Q Consensus 200 ~~~~~~~~~~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~---- 275 (765)
...+.|+++|||||||||||..+ .+| +.||||+|+|+.+|+++ .++++++|.+|++
T Consensus 44 ------~~~~~d~~gHGT~VAGiIaa~~n----~~G-----~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~ 103 (277)
T cd04843 44 ------GLTDQADSDHGTAVLGIIVAKDN----GIG-----VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSP 103 (277)
T ss_pred ------CCCCCCCCCCcchhheeeeeecC----CCc-----eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCC
Confidence 01145778999999999999632 122 37999999999999975 4456677777776
Q ss_pred CCCcEEEeccCCCCCCC------cccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcc-------------cCCCceEEEc
Q 004261 276 DGVDVLSMSLGGGSAPY------YRDTIAVGAFAAMEKGIVVSCSAGNSGPTKASLA-------------NVAPWILTVG 336 (765)
Q Consensus 276 ~g~dVIn~SlG~~~~~~------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~ap~vitVg 336 (765)
.++.+||||||...... ....+..++.+|.++|+++|+||||++....... ...|++|+||
T Consensus 104 ~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~Vg 183 (277)
T cd04843 104 GDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVG 183 (277)
T ss_pred CCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEE
Confidence 45678999999863211 2334556777888999999999999986532110 1234677777
Q ss_pred cCCCCCceeEEEEeCCceeEEeEeeccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhh
Q 004261 337 AGTLDRDFPAYVFLGNKKKATGVSLYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEK 416 (765)
Q Consensus 337 Ast~d~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~ 416 (765)
|.+.+.
T Consensus 184 A~~~~~-------------------------------------------------------------------------- 189 (277)
T cd04843 184 AGSSTT-------------------------------------------------------------------------- 189 (277)
T ss_pred eccCCC--------------------------------------------------------------------------
Confidence 632110
Q ss_pred hHHHhhcCccEEEEeecCCCCccccccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCC
Q 004261 417 GAVVRDAGGVGMILANTAASGEELVADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRG 496 (765)
Q Consensus 417 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 496 (765)
...++.||++|
T Consensus 190 ---------------------------------------------------------------------~~~~~~fSn~G 200 (277)
T cd04843 190 ---------------------------------------------------------------------GHTRLAFSNYG 200 (277)
T ss_pred ---------------------------------------------------------------------CCccccccCCC
Confidence 01368999999
Q ss_pred CCCCCCCCcCCceeecCCcEEeeecCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHh----h-CCCCCHHHHH
Q 004261 497 PNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKA----A-HPDWSPSAIK 571 (765)
Q Consensus 497 p~~~~~~~lKPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~P~~sp~~ik 571 (765)
|.. ||.|||++|+++........ .+.....|..++|||||||||||++|||++ + +|+|+|+|||
T Consensus 201 ~~v--------di~APG~~i~s~~~~~~~~~---~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~ 269 (277)
T cd04843 201 SRV--------DVYGWGENVTTTGYGDLQDL---GGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMR 269 (277)
T ss_pred Ccc--------ceEcCCCCeEecCCCCcccc---cCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHH
Confidence 975 99999999999987643110 011111457899999999999999999975 3 4999999999
Q ss_pred HHHHhcce
Q 004261 572 SALMTTAY 579 (765)
Q Consensus 572 ~~L~~TA~ 579 (765)
++|+.|++
T Consensus 270 ~~L~~t~~ 277 (277)
T cd04843 270 ELLTATGT 277 (277)
T ss_pred HHHHhcCC
Confidence 99999974
No 28
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.8e-41 Score=356.64 Aligned_cols=265 Identities=29% Similarity=0.332 Sum_probs=183.5
Q ss_pred ccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCCC
Q 004261 127 DFDKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEP 206 (765)
Q Consensus 127 ~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~ 206 (765)
..+++|+||+|||||||||++||+|.+.. +..++|.+ .
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~---------------------------~~~~~~~~---------------~ 39 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD---------------------------ITTKSFVG---------------G 39 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc---------------------------ccCcccCC---------------C
Confidence 35789999999999999999999997531 11112221 0
Q ss_pred CCCCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC-CChHHHHHHHHHHHhCCCcEEEecc
Q 004261 207 ESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-CFGSDILAGIDRAIQDGVDVLSMSL 285 (765)
Q Consensus 207 ~~~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~Sl 285 (765)
..+.|.+||||||||||+|+..+. ...||||+|+|+.+|++...+ +...++++||+||++.+++||||||
T Consensus 40 ~~~~d~~gHGT~VAgiiag~~~~~---------~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~ 110 (297)
T cd07480 40 EDVQDGHGHGTHCAGTIFGRDVPG---------PRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSL 110 (297)
T ss_pred CCCCCCCCcHHHHHHHHhcccCCC---------cccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEecc
Confidence 224678899999999999986542 136999999999999997665 7777899999999999999999999
Q ss_pred CCCCCC----------CcccHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCCcc-----cCCCceEEE
Q 004261 286 GGGSAP----------YYRDTIAVGAFAA---------------MEKGIVVSCSAGNSGPTKASLA-----NVAPWILTV 335 (765)
Q Consensus 286 G~~~~~----------~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~-----~~ap~vitV 335 (765)
|..... .....+......+ .++|++||+||||+|....... ...+.+++|
T Consensus 111 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V 190 (297)
T cd07480 111 GADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGV 190 (297)
T ss_pred CCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEE
Confidence 985411 1111222222223 6899999999999986533211 111222222
Q ss_pred ccCCCCCceeEEEEeCCceeEEeEeeccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhh
Q 004261 336 GAGTLDRDFPAYVFLGNKKKATGVSLYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVE 415 (765)
Q Consensus 336 gAst~d~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~ 415 (765)
++..
T Consensus 191 ~~V~---------------------------------------------------------------------------- 194 (297)
T cd07480 191 AAVG---------------------------------------------------------------------------- 194 (297)
T ss_pred EEEC----------------------------------------------------------------------------
Confidence 2210
Q ss_pred hhHHHhhcCccEEEEeecCCCCccccccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCC
Q 004261 416 KGAVVRDAGGVGMILANTAASGEELVADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSR 495 (765)
Q Consensus 416 ~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~ 495 (765)
.. +....|+++
T Consensus 195 --------------------------------------~~-------------------------------~~~~~~~~~ 205 (297)
T cd07480 195 --------------------------------------AL-------------------------------GRTGNFSAV 205 (297)
T ss_pred --------------------------------------CC-------------------------------CCCCCcccc
Confidence 00 011222333
Q ss_pred CCCCCCCCCcCCceeecCCcEEeeecCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHH
Q 004261 496 GPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALM 575 (765)
Q Consensus 496 Gp~~~~~~~lKPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~ 575 (765)
.+. ...||||+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|.+++.+++.+|+
T Consensus 206 ~~~----~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~ 268 (297)
T cd07480 206 ANF----SNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQ 268 (297)
T ss_pred CCC----CCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHH
Confidence 222 234789999999999988765 799999999999999999999999999999998888888
Q ss_pred hcceeccCCCCCCCCCCCCCCCCCCcCCCcccCccc
Q 004261 576 TTAYVVDNTKSPLHDAADGRLSTPWAHGSGHVNPQK 611 (765)
Q Consensus 576 ~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~ 611 (765)
.......... ........++|+|++++.+
T Consensus 269 ~~l~~~~~~~-------~~~~~~~~~~g~G~~~~~~ 297 (297)
T cd07480 269 ARLTAARTTQ-------FAPGLDLPDRGVGLGLAPA 297 (297)
T ss_pred HHHhhcccCC-------CCCCCChhhcCCceeecCC
Confidence 5433211000 1122455689999998753
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-40 Score=346.85 Aligned_cols=249 Identities=30% Similarity=0.473 Sum_probs=190.1
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCCCCCccccc---ccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCCCCCC
Q 004261 133 LDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRG---QCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESP 209 (765)
Q Consensus 133 ~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g---~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~ 209 (765)
+||+|||||||||++||+|.+. .|.. .+..+.+.. ....+.. ..+|+.. ....++
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~--------~~~~~~ 59 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDD----GNGYVDD---IYGWNFV--------NNDNDP 59 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccC----CCCcccC---CCccccc--------CCCCCC
Confidence 6899999999999999999864 2321 111111110 0000000 0012111 122456
Q ss_pred CCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC-CChHHHHHHHHHHHhCCCcEEEeccCCC
Q 004261 210 RDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-CFGSDILAGIDRAIQDGVDVLSMSLGGG 288 (765)
Q Consensus 210 ~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 288 (765)
.|..+|||||||||+|...+... +.|+||+|+|+.+|++...+ +...+++++|+++++.+++|||+|||..
T Consensus 60 ~d~~~HGT~va~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~ 131 (259)
T cd07473 60 MDDNGHGTHVAGIIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGG 131 (259)
T ss_pred CCCCCcHHHHHHHHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 78899999999999998654322 47999999999999998877 8888999999999999999999999986
Q ss_pred CCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCC---CCccc--CCCceEEEccCCCCCceeEEEEeCCceeEEeEeecc
Q 004261 289 SAPYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTK---ASLAN--VAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYS 363 (765)
Q Consensus 289 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~ap~vitVgAst~d~~~~~~~~~~~g~~~~~~s~~~ 363 (765)
.. ...+..++.++.++|++||+||||+|... ..++. ..+++|+||+.+.
T Consensus 132 ~~---~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~----------------------- 185 (259)
T cd07473 132 GP---SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS----------------------- 185 (259)
T ss_pred CC---CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC-----------------------
Confidence 33 45677777788999999999999999762 23333 3578888887321
Q ss_pred CCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCcccccc
Q 004261 364 GNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELVAD 443 (765)
Q Consensus 364 ~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 443 (765)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCCcEEeeecCC
Q 004261 444 SHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEA 523 (765)
Q Consensus 444 ~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~I~sa~~~~ 523 (765)
.+.++.||++||.. ||+.|||.++++..+..
T Consensus 186 ------------------------------------------~~~~~~~s~~g~~~-------~~~~apG~~~~~~~~~~ 216 (259)
T cd07473 186 ------------------------------------------NDALASFSNYGKKT-------VDLAAPGVDILSTSPGG 216 (259)
T ss_pred ------------------------------------------CCCcCcccCCCCCC-------cEEEeccCCeEeccCCC
Confidence 12456789999863 59999999999976554
Q ss_pred CCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcce
Q 004261 524 SGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTAY 579 (765)
Q Consensus 524 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 579 (765)
.|..++|||||||+|||++||++|++|.+++.+||++|++||+
T Consensus 217 -------------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 217 -------------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred -------------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 7899999999999999999999999999999999999999984
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=4.9e-40 Score=338.17 Aligned_cols=226 Identities=35% Similarity=0.540 Sum_probs=185.7
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 004261 134 DVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRDYD 213 (765)
Q Consensus 134 gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~d~~ 213 (765)
||+|||||+||+++||+|.+. ++..++|... ......|..
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~-------------~~~~~~~~~ 40 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGD-------------DNNDYQDGN 40 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCC-------------CCCCCCCCC
Confidence 799999999999999999753 1122222221 002446678
Q ss_pred CCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCC
Q 004261 214 GHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-CFGSDILAGIDRAIQDGVDVLSMSLGGGSAPY 292 (765)
Q Consensus 214 gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~ 292 (765)
+|||||||||++..... .+.|+||+|+|+.+|+++..+ +...+++++++++++.+++|||||||....
T Consensus 41 ~HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~-- 109 (229)
T cd07477 41 GHGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSD-- 109 (229)
T ss_pred CCHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCC--
Confidence 99999999999975432 248999999999999998876 677899999999999999999999998532
Q ss_pred cccHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--ccCCCceEEEccCCCCCceeEEEEeCCceeEEeEeeccCCCCCCe
Q 004261 293 YRDTIAVGAFAAMEKGIVVSCSAGNSGPTKASL--ANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYSGNGMGNK 370 (765)
Q Consensus 293 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVgAst~d~~~~~~~~~~~g~~~~~~s~~~~~~~~~~ 370 (765)
...+..++..+.++|+++|+||||++...... ++..+++|+||+.+.+
T Consensus 110 -~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~----------------------------- 159 (229)
T cd07477 110 -SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN----------------------------- 159 (229)
T ss_pred -CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC-----------------------------
Confidence 33456666788899999999999999877664 7888999999984321
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCccccccCccccEE
Q 004261 371 PVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELVADSHLLPAV 450 (765)
Q Consensus 371 ~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~ 450 (765)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCCcEEeeecCCCCCCCcc
Q 004261 451 AIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELE 530 (765)
Q Consensus 451 ~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~I~sa~~~~~~~~~~~ 530 (765)
+.++.||++|+.. |+.|||.+|+++++..
T Consensus 160 ------------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~------- 188 (229)
T cd07477 160 ------------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPNN------- 188 (229)
T ss_pred ------------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCCC-------
Confidence 2456789999864 9999999999998764
Q ss_pred cCccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhc
Q 004261 531 KDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTT 577 (765)
Q Consensus 531 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~T 577 (765)
.|..++|||||||+|||++|||+|++|+++|.+||++|++|
T Consensus 189 ------~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 189 ------DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred ------CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999986
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3e-40 Score=340.92 Aligned_cols=156 Identities=21% Similarity=0.261 Sum_probs=118.2
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCCCCCCCC
Q 004261 132 SLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRD 211 (765)
Q Consensus 132 G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~d 211 (765)
+++|+|||||||||++||+|.+. ++..++|.......+ .......|
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~~~-------~~~~~~~d 47 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGDGN-------KVSPYYVS 47 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCCcc-------cCCCCCCC
Confidence 78999999999999999999743 122222222100000 00122356
Q ss_pred CCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC-------CChHHHHHHHHHHHhCCCcEEEec
Q 004261 212 YDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-------CFGSDILAGIDRAIQDGVDVLSMS 284 (765)
Q Consensus 212 ~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-------~~~~~i~~ai~~a~~~g~dVIn~S 284 (765)
..||||||||||+ |+||+|+|+.+|+++..+ ++..++++||+||+++|+||||||
T Consensus 48 ~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S 109 (247)
T cd07491 48 ADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMS 109 (247)
T ss_pred CCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEee
Confidence 8899999999994 789999999999997654 356789999999999999999999
Q ss_pred cCCCCCCC---cccHHHHHHHHHHhCCcEEEEecCCCCCCCC-C--cccCCCceEEEccCC
Q 004261 285 LGGGSAPY---YRDTIAVGAFAAMEKGIVVSCSAGNSGPTKA-S--LANVAPWILTVGAGT 339 (765)
Q Consensus 285 lG~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~--~~~~ap~vitVgAst 339 (765)
||...... ....+..++.+|.++|++||+||||+|.... . .++..|++|+|||.+
T Consensus 110 ~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 110 WTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred eecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 99864321 2456788888999999999999999997754 3 346778999999843
No 32
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=7.8e-41 Score=355.23 Aligned_cols=274 Identities=33% Similarity=0.505 Sum_probs=208.6
Q ss_pred EEEEeccCCCCCCCCCC-CCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCCCCCCCCCCC
Q 004261 136 IIGVLDTGVWPESKSFD-DSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRDYDG 214 (765)
Q Consensus 136 ~VaVIDtGid~~Hp~f~-~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~d~~g 214 (765)
+|||||||||++||+|. .. ....++.+.+.|.++. .......|..+
T Consensus 1 ~V~viDtGid~~h~~~~~~~----------------------~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 47 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN----------------------FIWSKVPGGYNFVDGN-----------PNPSPSDDDNG 47 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT----------------------EEEEEEEEEEETTTTB-----------STTTSSSTSSS
T ss_pred CEEEEcCCcCCCChhHccCC----------------------cccccccceeeccCCC-----------CCcCccccCCC
Confidence 69999999999999997 32 0112344455555422 01245577889
Q ss_pred CchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCCCChHHHHHHHHHHH-hCCCcEEEeccCCCC--C-
Q 004261 215 HGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFGSDILAGIDRAI-QDGVDVLSMSLGGGS--A- 290 (765)
Q Consensus 215 HGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~-~~g~dVIn~SlG~~~--~- 290 (765)
|||||||||+|.. . .+.. .+.|+||+|+|+.+|+++..+....+++++|++++ +++++|||||||... .
T Consensus 48 HGT~va~ii~~~~-~-~~~~-----~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~ 120 (282)
T PF00082_consen 48 HGTHVAGIIAGNG-G-NNGP-----GINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPD 120 (282)
T ss_dssp HHHHHHHHHHHTT-S-SSSS-----SETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSH
T ss_pred ccchhhhhccccc-c-cccc-----ccccccccccccccccccccccccccccchhhhhhhccCCccccccccccccccc
Confidence 9999999999986 2 2211 23799999999999998777777788999999999 899999999998732 1
Q ss_pred CCcccHHHHHHHHHHhCCcEEEEecCCCCCCCC---CcccCCCceEEEccCCCCCceeEEEEeCCceeEEeEeeccCCCC
Q 004261 291 PYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTKA---SLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYSGNGM 367 (765)
Q Consensus 291 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgAst~d~~~~~~~~~~~g~~~~~~s~~~~~~~ 367 (765)
+...+.+..+...+.++|+++|+||||+|.... ..++..+++|+||+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~--------------------------- 173 (282)
T PF00082_consen 121 PSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN--------------------------- 173 (282)
T ss_dssp SHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET---------------------------
T ss_pred cccccccccccccccccCcceeecccccccccccccccccccccccccccccc---------------------------
Confidence 223344566666889999999999999987765 35566788899987321
Q ss_pred CCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCccccccCccc
Q 004261 368 GNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELVADSHLL 447 (765)
Q Consensus 368 ~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ 447 (765)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCCcEEeeecCCCCCC
Q 004261 448 PAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPT 527 (765)
Q Consensus 448 p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~I~sa~~~~~~~~ 527 (765)
.+.++.||++|+... .+++||||+|||.+|+++++....
T Consensus 174 --------------------------------------~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~-- 212 (282)
T PF00082_consen 174 --------------------------------------NGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR-- 212 (282)
T ss_dssp --------------------------------------TSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES--
T ss_pred --------------------------------------ccccccccccccccc-cccccccccccccccccccccccc--
Confidence 114578999976542 389999999999999988876520
Q ss_pred CcccCccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcceeccCCCCCCCCCCCCCCCCCCcCCCccc
Q 004261 528 ELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSGHV 607 (765)
Q Consensus 528 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~v 607 (765)
..|..++|||||||+|||++|||+|++|+|++.+||.+|++||.++...+ .......||||+|
T Consensus 213 --------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~~~~~G~G~i 275 (282)
T PF00082_consen 213 --------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGYDNSYGWGLI 275 (282)
T ss_dssp --------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSSHHHHTTSBE
T ss_pred --------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCCCCCccCChh
Confidence 26889999999999999999999999999999999999999999886211 2234458899999
Q ss_pred CccccCC
Q 004261 608 NPQKAIS 614 (765)
Q Consensus 608 d~~~Al~ 614 (765)
|+.+|++
T Consensus 276 n~~~a~~ 282 (282)
T PF00082_consen 276 NAEKALN 282 (282)
T ss_dssp -HHHHHH
T ss_pred CHHHHhC
Confidence 9999874
No 33
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=1e-39 Score=348.86 Aligned_cols=148 Identities=28% Similarity=0.348 Sum_probs=106.7
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccc--cccccCCCCCCCCCCCCCCCC
Q 004261 134 DVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSK--GYHMAGGSFSKKPNEPESPRD 211 (765)
Q Consensus 134 gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~--g~~~~~~~~~~~~~~~~~~~d 211 (765)
.|+|||||||||++||+|.+.-.. ..+.+.. .++..... ...+.....|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~---~~~~~~~~~d 51 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS--------------------------YSKNLVPKGGYDGKEAG---ETGDINDIVD 51 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc--------------------------cccccccCCCcCCcccc---ccCCCCcCCC
Confidence 489999999999999999853100 0001100 00000000 0111234567
Q ss_pred CCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCC
Q 004261 212 YDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-CFGSDILAGIDRAIQDGVDVLSMSLGGGSA 290 (765)
Q Consensus 212 ~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 290 (765)
..||||||||+|+|+.. ..||||+|+|+.+|+++..+ ....++++||++|++++++|||||||....
T Consensus 52 ~~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~ 119 (294)
T cd07482 52 KLGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLI 119 (294)
T ss_pred CCCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCC
Confidence 88999999999998642 15999999999999998877 488899999999999999999999997532
Q ss_pred CC--------cccHHHHHHHHHHhCCcEEEEecCCCCCCC
Q 004261 291 PY--------YRDTIAVGAFAAMEKGIVVSCSAGNSGPTK 322 (765)
Q Consensus 291 ~~--------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~ 322 (765)
.. ..+.+..++..+.++|++||+||||+|...
T Consensus 120 ~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 120 IGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred CCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 21 123456666778899999999999999654
No 34
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=6.6e-40 Score=350.71 Aligned_cols=251 Identities=20% Similarity=0.180 Sum_probs=181.6
Q ss_pred CCCCccccccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCC
Q 004261 119 LSAGYSKLDFDKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGS 198 (765)
Q Consensus 119 ~~~~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~ 198 (765)
.++...+|..+++|+||+|+|||||||++||+|.+.... ...++|..+..
T Consensus 25 ~~~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~~----- 74 (297)
T cd04059 25 DLNVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDNDP----- 74 (297)
T ss_pred CcccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCCC-----
Confidence 456678999999999999999999999999999754110 01112222100
Q ss_pred CCCCCCCCCCC--CCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCCCChHHHHHHHHHHHhC
Q 004261 199 FSKKPNEPESP--RDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFGSDILAGIDRAIQD 276 (765)
Q Consensus 199 ~~~~~~~~~~~--~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~ 276 (765)
...+ .|..||||||||||+|+..+.. | ..||||+|+|+.+|+++.. .....+..++.++.+
T Consensus 75 -------~~~~~~~~~~gHGT~vAgiiag~~~~~~---~-----~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~- 137 (297)
T cd04059 75 -------DPTPRYDDDNSHGTRCAGEIAAVGNNGI---C-----GVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD- 137 (297)
T ss_pred -------CCCCccccccccCcceeeEEEeecCCCc---c-----cccccccceEeEEEecCCc-cccHHHHHHHhcccC-
Confidence 0112 2788999999999999864321 1 3799999999999998765 334455566666554
Q ss_pred CCcEEEeccCCCCCCC----cccHHHHHHHHHHh-----CCcEEEEecCCCCCCCC----CcccCCCceEEEccCCCCCc
Q 004261 277 GVDVLSMSLGGGSAPY----YRDTIAVGAFAAME-----KGIVVSCSAGNSGPTKA----SLANVAPWILTVGAGTLDRD 343 (765)
Q Consensus 277 g~dVIn~SlG~~~~~~----~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~----~~~~~ap~vitVgAst~d~~ 343 (765)
.++|||||||...... .......++.++.+ +|++||+||||+|.... ......|++|+|||.+.+
T Consensus 138 ~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~-- 215 (297)
T cd04059 138 YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN-- 215 (297)
T ss_pred CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC--
Confidence 4699999999763321 12233334444443 69999999999997322 122456789999884321
Q ss_pred eeEEEEeCCceeEEeEeeccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhc
Q 004261 344 FPAYVFLGNKKKATGVSLYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDA 423 (765)
Q Consensus 344 ~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~ 423 (765)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccEEEEeecCCCCccccccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCC
Q 004261 424 GGVGMILANTAASGEELVADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQ 503 (765)
Q Consensus 424 Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~ 503 (765)
+.++.||++|+..
T Consensus 216 ---------------------------------------------------------------g~~~~~s~~g~~~---- 228 (297)
T cd04059 216 ---------------------------------------------------------------GVRASYSEVGSSV---- 228 (297)
T ss_pred ---------------------------------------------------------------CCCcCCCCCCCcE----
Confidence 2467899999876
Q ss_pred CcCCceeecCCc-------EEeeecCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHh
Q 004261 504 ILKPDVIGPGVN-------ILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMT 576 (765)
Q Consensus 504 ~lKPDi~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~ 576 (765)
++.|||.. |+++..... ...|..++|||||||+|||++|||+|+||+|++.|||.+|++
T Consensus 229 ----~~~a~g~~~~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~ 294 (297)
T cd04059 229 ----LASAPSGGSGNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILAL 294 (297)
T ss_pred ----EEEecCCCCCCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHH
Confidence 79999987 666654420 126788999999999999999999999999999999999999
Q ss_pred cce
Q 004261 577 TAY 579 (765)
Q Consensus 577 TA~ 579 (765)
||+
T Consensus 295 TA~ 297 (297)
T cd04059 295 TAR 297 (297)
T ss_pred hcC
Confidence 985
No 35
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.6e-39 Score=328.54 Aligned_cols=221 Identities=22% Similarity=0.295 Sum_probs=172.9
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 004261 134 DVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRDYD 213 (765)
Q Consensus 134 gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~d~~ 213 (765)
||+|||||||||++||+|.+.-. ..+.+..+ .. ........|..
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~---------------------------~~~~~~~~-~~--------~~~~~~~~d~~ 44 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL---------------------------DGEVTIDL-EI--------IVVSAEGGDKD 44 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc---------------------------cccccccc-cc--------ccCCCCCCCCC
Confidence 79999999999999999975411 00111000 00 01123456788
Q ss_pred CCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCC
Q 004261 214 GHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-CFGSDILAGIDRAIQDGVDVLSMSLGGGSAPY 292 (765)
Q Consensus 214 gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~ 292 (765)
||||||||||++ .+|+++|+.+|+++..+ +..+++++||+|+++++++|||||||.....
T Consensus 45 gHGT~vAgiia~------------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~- 105 (222)
T cd07492 45 GHGTACAGIIKK------------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR- 105 (222)
T ss_pred CcHHHHHHHHHc------------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-
Confidence 999999999975 36999999999998876 8888899999999999999999999986432
Q ss_pred cccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccCCCCCceeEEEEeCCceeEEeEeeccCCCCCCeeE
Q 004261 293 YRDTIAVGAFAAMEKGIVVSCSAGNSGPTKASLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYSGNGMGNKPV 372 (765)
Q Consensus 293 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~ 372 (765)
....+..++.++.++|+++|+||||++.... .++..+++|+||+...++
T Consensus 106 ~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~------------------------------ 154 (222)
T cd07492 106 DFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD------------------------------ 154 (222)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC------------------------------
Confidence 2345666777888899999999999986543 367788999998732111
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCccccccCccccEEEE
Q 004261 373 SLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELVADSHLLPAVAI 452 (765)
Q Consensus 373 ~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v 452 (765)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCCcEEeeecCCCCCCCcccC
Q 004261 453 GRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEASGPTELEKD 532 (765)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~I~sa~~~~~~~~~~~~~ 532 (765)
.. +.+++ ++|+.|||.+|+++.+..
T Consensus 155 -----------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~~~--------- 179 (222)
T cd07492 155 -----------------------------------PK---SFWYI--------YVEFSADGVDIIAPAPHG--------- 179 (222)
T ss_pred -----------------------------------Cc---ccccC--------CceEEeCCCCeEeecCCC---------
Confidence 00 11122 349999999999988764
Q ss_pred ccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcce
Q 004261 533 TRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTAY 579 (765)
Q Consensus 533 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 579 (765)
.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 180 ----~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 ----RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ----CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=5e-38 Score=330.75 Aligned_cols=242 Identities=27% Similarity=0.350 Sum_probs=184.5
Q ss_pred CCCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCCCCCCC
Q 004261 131 ASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPR 210 (765)
Q Consensus 131 ~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~ 210 (765)
+|+||+|+|||+||+++||+|.+..... ..+..... .......
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~---------------------------~~~~~~~~----------~~~~~~~ 43 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA---------------------------SYYVAVND----------AGYASNG 43 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc---------------------------cccccccc----------ccCCCCC
Confidence 5999999999999999999998642110 00000000 0012345
Q ss_pred CCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC--CChHHHHHHHHHHHhCCCcEEEeccCCC
Q 004261 211 DYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG--CFGSDILAGIDRAIQDGVDVLSMSLGGG 288 (765)
Q Consensus 211 d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 288 (765)
|..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++..+ +....+.++++++++.+++|||||||..
T Consensus 44 ~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~ 114 (267)
T cd04848 44 DGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGN 114 (267)
T ss_pred CCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCC
Confidence 6789999999999998654 1248999999999999998764 5667788999999999999999999987
Q ss_pred CCC------------CcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCc---------ccCCCceEEEccCCCCCceeEE
Q 004261 289 SAP------------YYRDTIAVGAFAAMEKGIVVSCSAGNSGPTKASL---------ANVAPWILTVGAGTLDRDFPAY 347 (765)
Q Consensus 289 ~~~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---------~~~ap~vitVgAst~d~~~~~~ 347 (765)
... ...+.+...+..+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~----- 189 (267)
T cd04848 115 PAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG----- 189 (267)
T ss_pred CcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC-----
Confidence 422 1345566677788999999999999998654432 23457888888743221
Q ss_pred EEeCCceeEEeEeeccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccE
Q 004261 348 VFLGNKKKATGVSLYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVG 427 (765)
Q Consensus 348 ~~~~~g~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g 427 (765)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeecCCCCccccccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeee--ccCCCCCCCCCCCc
Q 004261 428 MILANTAASGEELVADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAA--FSSRGPNMVTPQIL 505 (765)
Q Consensus 428 ~i~~n~~~~~~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~Gp~~~~~~~l 505 (765)
.... ||++|+...
T Consensus 190 ------------------------------------------------------------~~~~~~~s~~~~~~~----- 204 (267)
T cd04848 190 ------------------------------------------------------------TIASYSYSNRCGVAA----- 204 (267)
T ss_pred ------------------------------------------------------------Ccccccccccchhhh-----
Confidence 1222 478876543
Q ss_pred CCceeecCCcEEeeecCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcce
Q 004261 506 KPDVIGPGVNILAAWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTTAY 579 (765)
Q Consensus 506 KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 579 (765)
.++++|||.+|+++.+.... .|..++|||||||+|||++||++|++|+++++|||++|++||+
T Consensus 205 ~~~~~apG~~i~~~~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 205 NWCLAAPGENIYSTDPDGGN-----------GYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred hheeecCcCceeecccCCCC-----------cccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 34799999999998774211 7889999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=330.61 Aligned_cols=360 Identities=21% Similarity=0.299 Sum_probs=264.8
Q ss_pred CceEEEEecCCCCCCcccchhHHHHHhhccccCCC------CceEEEEcceeeEEEEEcCH-----HHHHHHHcCCCeEE
Q 004261 25 KQTYIVHMKHQAKPSTFSTHNDWYASSVQSLSSST------DSLLYTYNTAYNGFAASLDP-----DQAQALRQSDAVLG 93 (765)
Q Consensus 25 ~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~y~~~~~g~s~~l~~-----~~~~~L~~~p~V~~ 93 (765)
+.+|||.|+..... +.+...+++.++.....+ ...-..|...|.-+-++-.. -++++|..+|.|+.
T Consensus 49 e~EyIv~F~~y~~A---k~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~ 125 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKPA---KDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKV 125 (1033)
T ss_pred cceeEEEecccccc---hHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCcee
Confidence 57899999976543 335566666665433221 22334555556665555432 35899999999999
Q ss_pred EEEcceecccc------------CCCCccc-c---------------ccc--------CCCCCCCccccccCCCCCCcEE
Q 004261 94 VYEDTLYTLHT------------TRSPQFL-G---------------ISS--------DFGLSAGYSKLDFDKASLDVII 137 (765)
Q Consensus 94 v~~~~~~~~~~------------~~s~~~~-g---------------~~~--------~~~~~~~~~~~~~~~~G~gV~V 137 (765)
|.|.+.+.+-. +....++ | -.+ ....++++-+|..|++|++|+|
T Consensus 126 v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~Vkv 205 (1033)
T KOG4266|consen 126 VFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVKV 205 (1033)
T ss_pred ecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceEE
Confidence 99988765521 0000000 0 000 0113567889999999999999
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCCCCCCCCCCCCCCCCCch
Q 004261 138 GVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRDYDGHGT 217 (765)
Q Consensus 138 aVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~d~~gHGT 217 (765)
||.|||+..+||-|+.- ....++++ -.+-.|.-||||
T Consensus 206 AiFDTGl~~~HPHFrnv----------------------------KERTNWTN---------------E~tLdD~lgHGT 242 (1033)
T KOG4266|consen 206 AIFDTGLRADHPHFRNV----------------------------KERTNWTN---------------EDTLDDNLGHGT 242 (1033)
T ss_pred EEeecccccCCccccch----------------------------hhhcCCcC---------------ccccccCcccce
Confidence 99999999999999732 00001111 134457789999
Q ss_pred hhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCcccH
Q 004261 218 HTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-CFGSDILAGIDRAIQDGVDVLSMSLGGGSAPYYRDT 296 (765)
Q Consensus 218 hVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~ 296 (765)
.|||+|||... ..|.||+++|+++|||.+.. .+.+.+++|+.||+....||+|+|+|++ ++.+.+
T Consensus 243 FVAGvia~~~e------------c~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP--DfmD~P 308 (1033)
T KOG4266|consen 243 FVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP--DFMDLP 308 (1033)
T ss_pred eEeeeeccchh------------hcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc--ccccch
Confidence 99999999741 36999999999999998776 8899999999999999999999999996 344556
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCC--ceEEEccCCCCCceeEEEEeCCceeEEeEeeccCCCCCCeeEEE
Q 004261 297 IAVGAFAAMEKGIVVSCSAGNSGPTKASLANVAP--WILTVGAGTLDRDFPAYVFLGNKKKATGVSLYSGNGMGNKPVSL 374 (765)
Q Consensus 297 ~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap--~vitVgAst~d~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~ 374 (765)
+-.-+......+|++|.|+||+||-..+..+.+. .||.||..
T Consensus 309 FVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI------------------------------------ 352 (1033)
T KOG4266|consen 309 FVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI------------------------------------ 352 (1033)
T ss_pred HHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc------------------------------------
Confidence 6666668889999999999999998887766443 45555531
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCccccccCccccEEEEch
Q 004261 375 VYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELVADSHLLPAVAIGR 454 (765)
Q Consensus 375 v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~ 454 (765)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCC----CCCCcCCceeecCCcEEeeecCCCCCCCcc
Q 004261 455 KMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMV----TPQILKPDVIGPGVNILAAWTEASGPTELE 530 (765)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~lKPDi~APG~~I~sa~~~~~~~~~~~ 530 (765)
...+.++.|||||-+.. ..|++||||++-|.+|.......
T Consensus 353 -----------------------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~------- 396 (1033)
T KOG4266|consen 353 -----------------------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVST------- 396 (1033)
T ss_pred -----------------------------cccchhhhhccCCcceeecCCcccccCCceEeeccccccCcccc-------
Confidence 11247899999995432 24899999999999987665443
Q ss_pred cCccceeeEEeccccchhhhhhhHHHHHHhh----CCCCCHHHHHHHHHhcceeccCCCCCCCCCCCCCCCCCCcCCCcc
Q 004261 531 KDTRRTKFNIMSGTSMSCPHLSGVAALLKAA----HPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPWAHGSGH 606 (765)
Q Consensus 531 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~ 606 (765)
+...+||||.|+|.|||+++||.+. .--++|+.+|++|+..|.+++.. .-|.||+|+
T Consensus 397 ------GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~-------------NMfEQGaGk 457 (1033)
T KOG4266|consen 397 ------GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP-------------NMFEQGAGK 457 (1033)
T ss_pred ------cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC-------------chhhccCcc
Confidence 6788999999999999999999872 23469999999999999988642 336999999
Q ss_pred cCccccCCC
Q 004261 607 VNPQKAISP 615 (765)
Q Consensus 607 vd~~~Al~~ 615 (765)
+|+.++.+-
T Consensus 458 ldLL~syqi 466 (1033)
T KOG4266|consen 458 LDLLESYQI 466 (1033)
T ss_pred hhHHHHHHH
Confidence 999988763
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-32 Score=301.76 Aligned_cols=238 Identities=26% Similarity=0.354 Sum_probs=179.2
Q ss_pred CCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccC-C--CChHHHHHHHHHHHhCCCcEEEeccCCC
Q 004261 212 YDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKT-G--CFGSDILAGIDRAIQDGVDVLSMSLGGG 288 (765)
Q Consensus 212 ~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 288 (765)
...|||||||||+|+...... ..||||+|+|+++++.+.. | .+...+.+|+..++++++||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 456999999999999765433 3799999999999997654 3 4556788999999999999999999976
Q ss_pred C-CCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCccc---CCCceEEEccCCCCCceeEEEEeCCceeEEeEeeccC
Q 004261 289 S-APYYRDTIAVGAFAAMEKGIVVSCSAGNSGPTKASLAN---VAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSLYSG 364 (765)
Q Consensus 289 ~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~---~ap~vitVgAst~d~~~~~~~~~~~g~~~~~~s~~~~ 364 (765)
. .+.....++..-..+.++|+++|+||||+||...++++ ....+|.|||--...
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~---------------------- 438 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPG---------------------- 438 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHH----------------------
Confidence 3 34444555555555668999999999999999887663 345788888711000
Q ss_pred CCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCccccccC
Q 004261 365 NGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELVADS 444 (765)
Q Consensus 365 ~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 444 (765)
T Consensus 439 -------------------------------------------------------------------------------- 438 (1304)
T KOG1114|consen 439 -------------------------------------------------------------------------------- 438 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCceeecCCcEEeeecCCC
Q 004261 445 HLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPDVIGPGVNILAAWTEAS 524 (765)
Q Consensus 445 ~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDi~APG~~I~sa~~~~~ 524 (765)
..+..... -.+-...+..+|||||+.| |-+--.|+|||+.|-+- |...
T Consensus 439 -----------mm~a~y~~------------------~e~vp~~~YtWsSRgP~~D--G~lGVsi~APggAiAsV-P~~t 486 (1304)
T KOG1114|consen 439 -----------MMQAEYSV------------------REPVPSNPYTWSSRGPCLD--GDLGVSISAPGGAIASV-PQYT 486 (1304)
T ss_pred -----------HHHhhhhh------------------hccCCCCccccccCCCCcC--CCcceEEecCCccccCC-chhh
Confidence 00000000 0011134678999999998 88888999999998653 2110
Q ss_pred CCCCcccCccceeeEEeccccchhhhhhhHHHHHHh----hCCCCCHHHHHHHHHhcceeccCCCCCCCCCCCCCCCCCC
Q 004261 525 GPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKA----AHPDWSPSAIKSALMTTAYVVDNTKSPLHDAADGRLSTPW 600 (765)
Q Consensus 525 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~ 600 (765)
...-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||+++++ -.+|
T Consensus 487 ----------lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~-------------id~f 543 (1304)
T KOG1114|consen 487 ----------LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGD-------------IDSF 543 (1304)
T ss_pred ----------hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCc-------------cchh
Confidence 01457899999999999999999976 46789999999999999998853 2568
Q ss_pred cCCCcccCccccCC
Q 004261 601 AHGSGHVNPQKAIS 614 (765)
Q Consensus 601 ~~G~G~vd~~~Al~ 614 (765)
.||.|++++++|.+
T Consensus 544 aqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 544 AQGQGMLQVDKAYE 557 (1304)
T ss_pred ccCcceeehhHHHH
Confidence 99999999999976
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.9e-33 Score=285.61 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=83.8
Q ss_pred CCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCCCChHHHHHHHHHH--HhCCCcEEEeccC
Q 004261 209 PRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFGSDILAGIDRA--IQDGVDVLSMSLG 286 (765)
Q Consensus 209 ~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a--~~~g~dVIn~SlG 286 (765)
..|.+||||||||||||. .|++|+|+|+..++.. ...+.+..+++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 457899999999999997 4677999998765521 2334567788888 5679999999999
Q ss_pred CCCCCC------cccHHHHHHHHHHhC-CcEEEEecCCCCCCC-----CCcccCCCceEEEccCC
Q 004261 287 GGSAPY------YRDTIAVGAFAAMEK-GIVVSCSAGNSGPTK-----ASLANVAPWILTVGAGT 339 (765)
Q Consensus 287 ~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~-----~~~~~~ap~vitVgAst 339 (765)
...... ..+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||..
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d 159 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTD 159 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEec
Confidence 864321 223456666666665 999999999999753 23456778999999843
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=4.8e-31 Score=272.20 Aligned_cols=196 Identities=37% Similarity=0.549 Sum_probs=157.4
Q ss_pred CCCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCC-CChHHHHHHHHHHH-hCCCcEEEecc
Q 004261 208 SPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTG-CFGSDILAGIDRAI-QDGVDVLSMSL 285 (765)
Q Consensus 208 ~~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~-~~g~dVIn~Sl 285 (765)
...+..+||||||++|++...... ..|+||+++|+.+|+....+ .....+++++++++ ..+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 446778999999999999864432 16999999999999987766 67788999999999 89999999999
Q ss_pred CCCCCCCcccHHHHHHHHHHhC-CcEEEEecCCCCCCCC---CcccCCCceEEEccCCCCCceeEEEEeCCceeEEeEee
Q 004261 286 GGGSAPYYRDTIAVGAFAAMEK-GIVVSCSAGNSGPTKA---SLANVAPWILTVGAGTLDRDFPAYVFLGNKKKATGVSL 361 (765)
Q Consensus 286 G~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgAst~d~~~~~~~~~~~g~~~~~~s~ 361 (765)
|..... ....+...+.++.++ |+++|+||||.+.... ..++..+++|+||+.+.+..
T Consensus 110 g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------ 170 (241)
T cd00306 110 GGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGT------------------ 170 (241)
T ss_pred CCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCCC------------------
Confidence 986443 234556666677777 9999999999998776 57788999999998543221
Q ss_pred ccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCcccc
Q 004261 362 YSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELV 441 (765)
Q Consensus 362 ~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 441 (765)
T Consensus 171 -------------------------------------------------------------------------------- 170 (241)
T cd00306 171 -------------------------------------------------------------------------------- 170 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeee-eccCCCCCCCCCCCcCCceeecCCcEEeee
Q 004261 442 ADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVA-AFSSRGPNMVTPQILKPDVIGPGVNILAAW 520 (765)
Q Consensus 442 ~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSS~Gp~~~~~~~lKPDi~APG~~I~sa~ 520 (765)
.. .++++| .|||+.|||.++....
T Consensus 171 -----------------------------------------------~~~~~~~~~--------~~~~~~apg~~~~~~~ 195 (241)
T cd00306 171 -----------------------------------------------PASPSSNGG--------AGVDIAAPGGDILSSP 195 (241)
T ss_pred -----------------------------------------------ccCCcCCCC--------CCceEEeCcCCccCcc
Confidence 11 233433 3679999999988751
Q ss_pred cCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhc
Q 004261 521 TEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSALMTT 577 (765)
Q Consensus 521 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~L~~T 577 (765)
... ...+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 196 ~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 196 TTG-----------GGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred cCC-----------CCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 111 1278999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.3e-23 Score=240.68 Aligned_cols=249 Identities=35% Similarity=0.488 Sum_probs=185.7
Q ss_pred cccccc--CCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCCCC
Q 004261 123 YSKLDF--DKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFS 200 (765)
Q Consensus 123 ~~~~~~--~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~ 200 (765)
...|.. +.+|+||+|+|||+||+..||+|.+.... .++|.+.
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~---------------------------~~~~~~~--------- 173 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA---------------------------GGDFVDG--------- 173 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhccccc---------------------------ccccccC---------
Confidence 557776 89999999999999999999999754110 0122221
Q ss_pred CCCCCCC-CCCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccC-C-CChHHHHHHHHHHHhCC
Q 004261 201 KKPNEPE-SPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKT-G-CFGSDILAGIDRAIQDG 277 (765)
Q Consensus 201 ~~~~~~~-~~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~~i~~ai~~a~~~g 277 (765)
... ...|.++|||||+|++++....+. ....|+||+++++.+|++... | ...++++.+|+++++.+
T Consensus 174 ----~~~~~~~d~~~hGt~vag~ia~~~~~~~-------~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 242 (508)
T COG1404 174 ----DPEPPFLDDNGHGTHVAGTIAAVIFDNG-------AGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLG 242 (508)
T ss_pred ----CCCCCCCCCCCCcceeeeeeeeecccCC-------CccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcC
Confidence 001 246889999999999998421111 114799999999999999866 5 77788899999999999
Q ss_pred --CcEEEeccCCCCCCCcccHHHHHHHHHHhCC-cEEEEecCCCCCCCC----CcccCC--CceEEEccCCCCCceeEEE
Q 004261 278 --VDVLSMSLGGGSAPYYRDTIAVGAFAAMEKG-IVVSCSAGNSGPTKA----SLANVA--PWILTVGAGTLDRDFPAYV 348 (765)
Q Consensus 278 --~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~----~~~~~a--p~vitVgAst~d~~~~~~~ 348 (765)
+++||||+|..........+..++..++..| +++|+++||.|.... .++... +.+++|||...
T Consensus 243 ~~~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~-------- 314 (508)
T COG1404 243 GPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL-------- 314 (508)
T ss_pred CCCcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC--------
Confidence 9999999998511122344555666777777 999999999997653 122222 25566655211
Q ss_pred EeCCceeEEeEeeccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEE
Q 004261 349 FLGNKKKATGVSLYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGM 428 (765)
Q Consensus 349 ~~~~g~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~ 428 (765)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCCCccccccCccccEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCCCCCCCcCCc
Q 004261 429 ILANTAASGEELVADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNMVTPQILKPD 508 (765)
Q Consensus 429 i~~n~~~~~~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPD 508 (765)
.+.++.||++|+.. ..+
T Consensus 315 ---------------------------------------------------------~~~~~~~s~~g~~~------~~~ 331 (508)
T COG1404 315 ---------------------------------------------------------SDTVASFSNDGSPT------GVD 331 (508)
T ss_pred ---------------------------------------------------------CCccccccccCCCC------Ccc
Confidence 13578899999752 239
Q ss_pred eeecCCcEEe-----eecCCCCCCCcccCccceeeEEeccccchhhhhhhHHHHHHhhCC-CCCHHHHHHHHHhccee
Q 004261 509 VIGPGVNILA-----AWTEASGPTELEKDTRRTKFNIMSGTSMSCPHLSGVAALLKAAHP-DWSPSAIKSALMTTAYV 580 (765)
Q Consensus 509 i~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~~sp~~ik~~L~~TA~~ 580 (765)
++|||.+|.+ ++++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++..
T Consensus 332 ~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 332 IAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred eeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc
Confidence 9999999988 444431 1499999999999999999999999999 89999999998888873
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.3e-23 Score=208.46 Aligned_cols=158 Identities=16% Similarity=0.188 Sum_probs=103.7
Q ss_pred CCCCccccccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCC
Q 004261 119 LSAGYSKLDFDKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGS 198 (765)
Q Consensus 119 ~~~~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~ 198 (765)
.+++..+|..+++|++|+++|+|.||||-||++... |+ --..++|....
T Consensus 147 dlnv~~awa~g~tgknvttaimddgvdymhpdlk~n------------------yn-------aeasydfssnd------ 195 (629)
T KOG3526|consen 147 DLNVAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------YN-------AEASYDFSSND------ 195 (629)
T ss_pred cccHHHHHhhcccCCCceEEeecCCchhcCcchhcc------------------cC-------ceeecccccCC------
Confidence 356678999999999999999999999999999632 11 12334444311
Q ss_pred CCCCCCCCCCCCC--CCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCCCChHHHHHHHHHHHh-
Q 004261 199 FSKKPNEPESPRD--YDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFGSDILAGIDRAIQ- 275 (765)
Q Consensus 199 ~~~~~~~~~~~~d--~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~- 275 (765)
+.+++-..| .+.|||.|||-+++...++. .| .|||.+.++..+|+++. .+..|+++|-..-.+
T Consensus 196 ----pfpyprytddwfnshgtrcagev~aardngi--cg------vgvaydskvagirmldq--pymtdlieansmghep 261 (629)
T KOG3526|consen 196 ----PFPYPRYTDDWFNSHGTRCAGEVVAARDNGI--CG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEP 261 (629)
T ss_pred ----CCCCCcccchhhhccCccccceeeeeccCCc--ee------eeeeeccccceeeecCC--chhhhhhhhcccCCCC
Confidence 112222222 57999999998877665543 33 59999999999999865 566677766433322
Q ss_pred CCCcEEEeccCCCCCCCccc----HHHHHHHHHHh-----CCcEEEEecCCCCCC
Q 004261 276 DGVDVLSMSLGGGSAPYYRD----TIAVGAFAAME-----KGIVVSCSAGNSGPT 321 (765)
Q Consensus 276 ~g~dVIn~SlG~~~~~~~~~----~~~~a~~~a~~-----~Gi~vV~AAGN~G~~ 321 (765)
..++|.+.|||.....-.-| +...|+.+-++ .|-+.|.|.|..|..
T Consensus 262 ~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 262 SKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred ceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 35789999999863322212 22222222222 356888888887743
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.75 E-value=8.7e-18 Score=183.68 Aligned_cols=101 Identities=25% Similarity=0.292 Sum_probs=82.2
Q ss_pred ceeeecCCCeEEEEEeeccCCCChHHHHHHHHHHHhC---CCcEEEeccCCCCCC---CcccHHHHHHHHHHhCCcEEEE
Q 004261 240 VARGMATHARVATYKVCWKTGCFGSDILAGIDRAIQD---GVDVLSMSLGGGSAP---YYRDTIAVGAFAAMEKGIVVSC 313 (765)
Q Consensus 240 ~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~---g~dVIn~SlG~~~~~---~~~~~~~~a~~~a~~~Gi~vV~ 313 (765)
.+.||||+|+|+.|+++++. ..+++.++.+++.+ +++|||+|||..... .+.+.+..++.+|..+||+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 35899999999999997542 45678888888887 999999999987432 2345677788889999999999
Q ss_pred ecCCCCCCCC-----------CcccCCCceEEEccCCCCCc
Q 004261 314 SAGNSGPTKA-----------SLANVAPWILTVGAGTLDRD 343 (765)
Q Consensus 314 AAGN~G~~~~-----------~~~~~ap~vitVgAst~d~~ 343 (765)
|+||+|.... ..++.+|+|++||+++....
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 9999997654 35688999999999877654
No 44
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.33 E-value=1.4e-11 Score=114.11 Aligned_cols=123 Identities=50% Similarity=0.848 Sum_probs=100.1
Q ss_pred EEeCCceeEEeEeeccCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCc-chhhhhHHHhhcCcc
Q 004261 348 VFLGNKKKATGVSLYSGNGMGNKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGIN-ARVEKGAVVRDAGGV 426 (765)
Q Consensus 348 ~~~~~g~~~~~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~-~~~~~~~~~~~~Ga~ 426 (765)
++|+||+++.|.+++++.. ..+++++............|....+...+++||||+|+++.| .+.++..+++++||.
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~ 78 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGA 78 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCc
Confidence 6899999999999997553 456777644322345567899888888899999999999999 899999999999999
Q ss_pred EEEEeecCCCCccccccCccccEEEEchhhHHHHHHHHhcCCCceEE
Q 004261 427 GMILANTAASGEELVADSHLLPAVAIGRKMGDIVREYAKTVPNPTAL 473 (765)
Q Consensus 427 g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~ 473 (765)
|+|++++.............+|++.|+..++..|++|++++.+++++
T Consensus 79 gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 79 GMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999887654333333467999999999999999999988776554
No 45
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.32 E-value=1.1e-11 Score=117.33 Aligned_cols=117 Identities=29% Similarity=0.361 Sum_probs=93.8
Q ss_pred CeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCccccc-cCccc
Q 004261 369 NKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELVA-DSHLL 447 (765)
Q Consensus 369 ~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~-~~~~~ 447 (765)
....+++|.+. |....+...+++|||+||+||.|.+.+|..+++++||.|+|++|+......... ....+
T Consensus 25 ~~~~~lv~~g~---------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~i 95 (143)
T cd02133 25 GKTYELVDAGL---------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFI 95 (143)
T ss_pred CcEEEEEEccC---------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeE
Confidence 46788898654 444555567899999999999999999999999999999999988764322221 23568
Q ss_pred cEEEEchhhHHHHHHHHhcCCCceEEEEecceEecccCCCeeeeccCCCCCC
Q 004261 448 PAVAIGRKMGDIVREYAKTVPNPTALLTFGGTVLNVRPSPVVAAFSSRGPNM 499 (765)
Q Consensus 448 p~~~v~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~ 499 (765)
|+++|+..+|..|.+|+++ .++|.+..+.. ..+++.++.||||||+.
T Consensus 96 P~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 96 PVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred eEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 9999999999999999988 66777776655 46778899999999973
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.98 E-value=1.1e-09 Score=93.07 Aligned_cols=77 Identities=39% Similarity=0.681 Sum_probs=59.1
Q ss_pred eEEEEecCCCCCCc-ccchhHHHHHhhccc----cCCCCceEEEEcceeeEEEEEcCHHHHHHHHcCCCeEEEEEcceec
Q 004261 27 TYIVHMKHQAKPST-FSTHNDWYASSVQSL----SSSTDSLLYTYNTAYNGFAASLDPDQAQALRQSDAVLGVYEDTLYT 101 (765)
Q Consensus 27 ~yIV~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~ 101 (765)
+|||+|++...... ...+.+++.+++++. .....++.+.|...|+||+++++++++++|+++|+|++|+||+.++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 69999999876654 667777777655432 2345899999999999999999999999999999999999999988
Q ss_pred cc
Q 004261 102 LH 103 (765)
Q Consensus 102 ~~ 103 (765)
+|
T Consensus 81 l~ 82 (82)
T PF05922_consen 81 LH 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 64
No 47
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.77 E-value=9.5e-08 Score=87.81 Aligned_cols=99 Identities=22% Similarity=0.235 Sum_probs=77.9
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCc---cccc--cC
Q 004261 370 KPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGE---ELVA--DS 444 (765)
Q Consensus 370 ~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~---~~~~--~~ 444 (765)
-.-++++... ...++|.+..+...+++|||+||+||.|.+.+|..+++++||.++|++|+..... .... ..
T Consensus 17 i~~~lv~~~~----~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~ 92 (122)
T cd04816 17 VTAPLVPLDP----ERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNID 92 (122)
T ss_pred cEEEEEEcCC----CCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCC
Confidence 3456666432 2357899887777889999999999999999999999999999999998876321 1111 34
Q ss_pred ccccEEEEchhhHHHHHHHHhcCCCceE
Q 004261 445 HLLPAVAIGRKMGDIVREYAKTVPNPTA 472 (765)
Q Consensus 445 ~~~p~~~v~~~~~~~l~~~~~~~~~~~~ 472 (765)
..+|+++|+..+|+.|++++..+.+.++
T Consensus 93 ~~iP~~~Is~~~G~~l~~~l~~g~~v~~ 120 (122)
T cd04816 93 LKVPVGVITKAAGAALRRRLGAGETLEL 120 (122)
T ss_pred CeeeEEEEcHHHHHHHHHHHcCCCEEEE
Confidence 5699999999999999999988765433
No 48
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.72 E-value=7.1e-08 Score=90.03 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=73.9
Q ss_pred CCCCCCCCCCC--CCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCc-cc---cccCccccEEEEchhhH
Q 004261 384 SSSNLCLPGSL--QPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGE-EL---VADSHLLPAVAIGRKMG 457 (765)
Q Consensus 384 ~~~~~c~~~~~--~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~-~~---~~~~~~~p~~~v~~~~~ 457 (765)
...++|.+... ++.++.|+|+|++||.|.|.+|..+++++||.++|++|+...+. .+ ......+|+++|+..+|
T Consensus 42 ~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G 121 (138)
T cd02122 42 NDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKG 121 (138)
T ss_pred CCcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHH
Confidence 34678998776 56789999999999999999999999999999999999886221 22 12234689999999999
Q ss_pred HHHHHHHhcCCCceEE
Q 004261 458 DIVREYAKTVPNPTAL 473 (765)
Q Consensus 458 ~~l~~~~~~~~~~~~~ 473 (765)
+.|++++..+.+.+++
T Consensus 122 ~~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 122 MEILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHHcCCcEEEe
Confidence 9999999988776554
No 49
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.71 E-value=1.1e-07 Score=85.75 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=73.8
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCcc--cc--ccCc
Q 004261 370 KPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEE--LV--ADSH 445 (765)
Q Consensus 370 ~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~~--~~~~ 445 (765)
..+|++.. +...+|....+.+.+++|||+|++||.|.|.+|..+++++||.++|++|+...... .. ....
T Consensus 20 ~~~~~~~~------~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v 93 (120)
T cd02129 20 TLLPLRNL------TSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKI 93 (120)
T ss_pred cceeeecC------CCcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCC
Confidence 45666653 34578999888778899999999999999999999999999999999998763111 11 1345
Q ss_pred cccEEEEchhhHHHHHHHHhc
Q 004261 446 LLPAVAIGRKMGDIVREYAKT 466 (765)
Q Consensus 446 ~~p~~~v~~~~~~~l~~~~~~ 466 (765)
.||+++|+..+|..|++.+..
T Consensus 94 ~IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 94 DIPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred cccEEEEeHHHHHHHHHHhcc
Confidence 789999999999999888763
No 50
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.69 E-value=1.2e-07 Score=86.03 Aligned_cols=88 Identities=18% Similarity=0.289 Sum_probs=71.7
Q ss_pred CCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCC-c-cc--c----ccCccccEEEEchhhH
Q 004261 386 SNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASG-E-EL--V----ADSHLLPAVAIGRKMG 457 (765)
Q Consensus 386 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~-~~--~----~~~~~~p~~~v~~~~~ 457 (765)
.++|..... ..+++|||+|++||.|.|.+|..+++++||.++|++|+.... . .+ . .....||+++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 567987443 567999999999999999999999999999999999976541 1 11 1 1235799999999999
Q ss_pred HHHHHHHhcCCCceEEE
Q 004261 458 DIVREYAKTVPNPTALL 474 (765)
Q Consensus 458 ~~l~~~~~~~~~~~~~i 474 (765)
+.|++.+..+..+++.+
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999888776654
No 51
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.67 E-value=1.1e-07 Score=86.83 Aligned_cols=89 Identities=25% Similarity=0.329 Sum_probs=71.9
Q ss_pred CCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCcccc----ccCccccEEEEchhhHHH
Q 004261 384 SSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELV----ADSHLLPAVAIGRKMGDI 459 (765)
Q Consensus 384 ~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~v~~~~~~~ 459 (765)
...+.|.+.... .+++|||+||+|+.|.+..|..+++++||.|+|++|+........ .....+|+++|+..++..
T Consensus 25 ~~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 25 SNTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred CcccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 345689887764 469999999999999999999999999999999998876422111 123579999999999999
Q ss_pred HHHHHhcCCCceEE
Q 004261 460 VREYAKTVPNPTAL 473 (765)
Q Consensus 460 l~~~~~~~~~~~~~ 473 (765)
|++|++.+...+++
T Consensus 104 l~~~l~~g~~v~v~ 117 (118)
T cd04818 104 LKAALAAGGTVTVT 117 (118)
T ss_pred HHHHHhcCCcEEEe
Confidence 99999987765443
No 52
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.66 E-value=4.1e-08 Score=87.01 Aligned_cols=79 Identities=25% Similarity=0.364 Sum_probs=64.3
Q ss_pred CCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCC----CCccccccCccccEEEEchhhHHHHH
Q 004261 386 SNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAA----SGEELVADSHLLPAVAIGRKMGDIVR 461 (765)
Q Consensus 386 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~----~~~~~~~~~~~~p~~~v~~~~~~~l~ 461 (765)
...|........+++||||||+||.|.+.+|..+++++||.|+|++|... ...........+|+++|+..+++.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 34577777788999999999999999999999999999999999999222 22233455678999999999999999
Q ss_pred HHH
Q 004261 462 EYA 464 (765)
Q Consensus 462 ~~~ 464 (765)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 985
No 53
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.58 E-value=2.5e-07 Score=85.26 Aligned_cols=86 Identities=27% Similarity=0.315 Sum_probs=68.9
Q ss_pred CCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCC-----ccc--c-----ccCccccEEEEc
Q 004261 386 SNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASG-----EEL--V-----ADSHLLPAVAIG 453 (765)
Q Consensus 386 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-----~~~--~-----~~~~~~p~~~v~ 453 (765)
.+.|..... +.+++|||+|++||.|.|.+|..+++++||.++|++|+.... ..+ . .....||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 557899999999999999999999999999999999876532 111 1 124578999999
Q ss_pred hhhHHHHHHHHhcCCCceE
Q 004261 454 RKMGDIVREYAKTVPNPTA 472 (765)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~ 472 (765)
..+|+.|+++++.+...++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999987765443
No 54
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.2e-06 Score=96.97 Aligned_cols=161 Identities=16% Similarity=0.114 Sum_probs=100.9
Q ss_pred CCCCccccccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCceeEeeeeccccccccCCC
Q 004261 119 LSAGYSKLDFDKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGS 198 (765)
Q Consensus 119 ~~~~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~ 198 (765)
.++....|..+++|+++.|+|.|.|+...||+.... .-..+.+++...-.
T Consensus 19 d~~v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~~~----- 68 (431)
T KOG3525|consen 19 DLNVQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRHDN----- 68 (431)
T ss_pred cceeeeccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeecCCC-----
Confidence 355567999999999999999999999999998642 11122222222100
Q ss_pred CCCCCCCCCCCCCCCCCchhhHHhhccCCCCccCcccccCcceeeecCCCeEEEEEeeccCCCChHHHHHHHHHHHh-CC
Q 004261 199 FSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFGSDILAGIDRAIQ-DG 277 (765)
Q Consensus 199 ~~~~~~~~~~~~d~~gHGThVAgi~Ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g 277 (765)
.+....+....+.|||-||+-.+...++..- ..|+++++++..++++.. ..++...+...... .-
T Consensus 69 ---~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~C--------~vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~ 134 (431)
T KOG3525|consen 69 ---DPEPRCDGTNENKHGTRCAGCVAARANNLTC--------GVGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCH 134 (431)
T ss_pred ---CcccccCCCCccccCCCCCcccccccCCCcC--------CCCcccCccccceeeeee---ecccceecccccCCCCC
Confidence 0111222334689999999999987633221 269999999999999743 22233333333333 35
Q ss_pred CcEEEeccCCCCCCC----cccHHHHHHHH-----HHhCCcEEEEecCCCCCCCC
Q 004261 278 VDVLSMSLGGGSAPY----YRDTIAVGAFA-----AMEKGIVVSCSAGNSGPTKA 323 (765)
Q Consensus 278 ~dVIn~SlG~~~~~~----~~~~~~~a~~~-----a~~~Gi~vV~AAGN~G~~~~ 323 (765)
+++-+.|||.....- .......+... ...+|-+.|++.||.|....
T Consensus 135 ~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 135 IDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred ceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 789999999753211 11112222222 24678899999999886654
No 55
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.54 E-value=3.8e-07 Score=83.84 Aligned_cols=96 Identities=21% Similarity=0.234 Sum_probs=74.4
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCcc----ccccCc
Q 004261 370 KPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEE----LVADSH 445 (765)
Q Consensus 370 ~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~----~~~~~~ 445 (765)
..-++++.. ...|.+..+ +.+++|||+|++||.|.+.+|..+++++||.|+|++|+...+.. ......
T Consensus 22 ~~g~lv~~~-------~~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~ 93 (122)
T cd02130 22 VTGPLVVVP-------NLGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGP 93 (122)
T ss_pred cEEEEEEeC-------CCCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCC
Confidence 345666643 346886554 35799999999999999999999999999999999998742211 112245
Q ss_pred cccEEEEchhhHHHHHHHHhcCCCceEE
Q 004261 446 LLPAVAIGRKMGDIVREYAKTVPNPTAL 473 (765)
Q Consensus 446 ~~p~~~v~~~~~~~l~~~~~~~~~~~~~ 473 (765)
.+|+++|+..+|+.|++.++++.+.+++
T Consensus 94 ~Ip~v~Is~~~G~~L~~~l~~g~~v~~~ 121 (122)
T cd02130 94 YVPTVGISQEDGKALVAALANGGEVSAN 121 (122)
T ss_pred EeeEEEecHHHHHHHHHHHhcCCcEEEe
Confidence 7999999999999999999988776553
No 56
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.53 E-value=3.4e-07 Score=84.55 Aligned_cols=87 Identities=22% Similarity=0.244 Sum_probs=70.6
Q ss_pred CCCCCCCC--CCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCc-cc-c----ccCccccEEEEchhhH
Q 004261 386 SNLCLPGS--LQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGE-EL-V----ADSHLLPAVAIGRKMG 457 (765)
Q Consensus 386 ~~~c~~~~--~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~-~~-~----~~~~~~p~~~v~~~~~ 457 (765)
...|.... +...+++|||+||+++.|.+.+|..+++++||.|+|++++..... .. . .....+|++.|+..++
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g 109 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADG 109 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHH
Confidence 34587776 667889999999999999999999999999999999999876321 11 1 1345799999999999
Q ss_pred HHHHHHHhcCCCceE
Q 004261 458 DIVREYAKTVPNPTA 472 (765)
Q Consensus 458 ~~l~~~~~~~~~~~~ 472 (765)
..|++|+.++.+.++
T Consensus 110 ~~l~~~~~~~~~v~~ 124 (126)
T cd00538 110 EALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHhcCCceEE
Confidence 999999988665443
No 57
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.51 E-value=1.6e-06 Score=80.09 Aligned_cols=99 Identities=17% Similarity=0.167 Sum_probs=72.7
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCcc-ccccCccccEE
Q 004261 372 VSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEE-LVADSHLLPAV 450 (765)
Q Consensus 372 ~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~~~~~~~p~~ 450 (765)
+|++..... .....++|.+...+..+++|||+|++||.|.|.+|..+++++||.++|++|+...... .......+|.+
T Consensus 28 ~p~~~~~~~-~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~ 106 (129)
T cd02124 28 LPLWALSLD-TSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAA 106 (129)
T ss_pred ceEEEeecc-cCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeE
Confidence 555444322 2345678987665656899999999999999999999999999999999988754221 12223345656
Q ss_pred EEchhhHHHHHHHHhcCCCceE
Q 004261 451 AIGRKMGDIVREYAKTVPNPTA 472 (765)
Q Consensus 451 ~v~~~~~~~l~~~~~~~~~~~~ 472 (765)
.+ ..+|+.|++.++.+...++
T Consensus 107 ~~-~~~G~~l~~~l~~G~~vtv 127 (129)
T cd02124 107 VT-PEDGEAWIDALAAGSNVTV 127 (129)
T ss_pred Ee-HHHHHHHHHHHhcCCeEEE
Confidence 56 9999999999987765443
No 58
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.51 E-value=8.8e-07 Score=81.50 Aligned_cols=89 Identities=15% Similarity=0.165 Sum_probs=69.1
Q ss_pred CCCCCCCCCCC--CC----cccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCcc-c----------cccCccc
Q 004261 385 SSNLCLPGSLQ--PE----LVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEE-L----------VADSHLL 447 (765)
Q Consensus 385 ~~~~c~~~~~~--~~----~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~----------~~~~~~~ 447 (765)
..++|.+.... +. ...++|+|++||.|.|.+|..+++++||.++|++|+...... . ......+
T Consensus 21 ~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 21 NRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred ccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 35678875442 22 378899999999999999999999999999999998653211 1 1123468
Q ss_pred cEEEEchhhHHHHHHHHhcCCCceEE
Q 004261 448 PAVAIGRKMGDIVREYAKTVPNPTAL 473 (765)
Q Consensus 448 p~~~v~~~~~~~l~~~~~~~~~~~~~ 473 (765)
|+++|+..+|+.|++.+..+...+++
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 99999999999999999988765543
No 59
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.51 E-value=5.2e-07 Score=84.69 Aligned_cols=84 Identities=19% Similarity=0.335 Sum_probs=68.5
Q ss_pred CCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCcccc------ccCccccEEEEchhhHHH
Q 004261 386 SNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEELV------ADSHLLPAVAIGRKMGDI 459 (765)
Q Consensus 386 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~------~~~~~~p~~~v~~~~~~~ 459 (765)
.++|.... .+++|||+|++||.|.|.+|..+++++||.++|++|+........ .....||+++|+..+|..
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 56798754 479999999999999999999999999999999998775321111 113579999999999999
Q ss_pred HHHHHhcCCCceE
Q 004261 460 VREYAKTVPNPTA 472 (765)
Q Consensus 460 l~~~~~~~~~~~~ 472 (765)
|++.+..+...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999988776544
No 60
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.6e-06 Score=103.11 Aligned_cols=94 Identities=20% Similarity=0.285 Sum_probs=60.0
Q ss_pred eeeecCCCeEEEEEeeccCCCChHHHHHHHHHHHhCCC-cEEEeccCCCC-----CCCcccHHHHHHHHHHhCCcEEEEe
Q 004261 241 ARGMATHARVATYKVCWKTGCFGSDILAGIDRAIQDGV-DVLSMSLGGGS-----APYYRDTIAVGAFAAMEKGIVVSCS 314 (765)
Q Consensus 241 ~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~-dVIn~SlG~~~-----~~~~~~~~~~a~~~a~~~Gi~vV~A 314 (765)
.+-+||+|+|..|-. .. ........|+.+....-+ -++-.||+... .+..-+.++.-.+.|..+||.+++|
T Consensus 288 s~A~AP~A~I~lvva--p~-~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AA 364 (1174)
T COG4934 288 SHAMAPKANIDLVVA--PN-PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAA 364 (1174)
T ss_pred hhccCccCceEEEEc--CC-CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEe
Confidence 468999999999866 21 222233333333333211 23345666531 1223455666667888999999999
Q ss_pred cCCCCCCCC--------CcccCCCceEEEcc
Q 004261 315 AGNSGPTKA--------SLANVAPWILTVGA 337 (765)
Q Consensus 315 AGN~G~~~~--------~~~~~ap~vitVgA 337 (765)
+|.+|.... ..++++|++++||.
T Consensus 365 SGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 365 SGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred cccccccCCCcccceeecccCCCccEEeecC
Confidence 999986654 24578999999997
No 61
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.40 E-value=1.3e-06 Score=81.06 Aligned_cols=74 Identities=24% Similarity=0.377 Sum_probs=60.4
Q ss_pred CCCCcccCeEEEEeCCCcc-----hhhhhHHHhhcCccEEEEeecCCC-C-c--cccc--cCccccEEEEchhhHHHHHH
Q 004261 394 LQPELVRGKVVICDRGINA-----RVEKGAVVRDAGGVGMILANTAAS-G-E--ELVA--DSHLLPAVAIGRKMGDIVRE 462 (765)
Q Consensus 394 ~~~~~~~gkivl~~~g~~~-----~~~~~~~~~~~Ga~g~i~~n~~~~-~-~--~~~~--~~~~~p~~~v~~~~~~~l~~ 462 (765)
+.+.+++|||+|++||.|. |.+|.++++++||.|+|+||+... + . .+.. ....+|++.|+..+|+.|++
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 3456799999999999999 999999999999999999999732 1 1 1121 14589999999999999999
Q ss_pred HHhcC
Q 004261 463 YAKTV 467 (765)
Q Consensus 463 ~~~~~ 467 (765)
.+...
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 87543
No 62
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.40 E-value=1.3e-06 Score=79.11 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=65.2
Q ss_pred CCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCc--ccc----ccCccccEEEEchhhHH
Q 004261 385 SSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGE--ELV----ADSHLLPAVAIGRKMGD 458 (765)
Q Consensus 385 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~--~~~----~~~~~~p~~~v~~~~~~ 458 (765)
..++|... +..+++|||+|++||.|.|.+|..+++++||.++|++|+..... ... .....+|+++|+..++.
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 35679766 55789999999999999999999999999999999998776421 111 23357999999999999
Q ss_pred HHHHHHhc
Q 004261 459 IVREYAKT 466 (765)
Q Consensus 459 ~l~~~~~~ 466 (765)
.|+.++..
T Consensus 104 ~L~~l~~~ 111 (117)
T cd04813 104 LLSSLLPK 111 (117)
T ss_pred HHHHhccc
Confidence 99887654
No 63
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.34 E-value=2.2e-06 Score=81.72 Aligned_cols=84 Identities=23% Similarity=0.311 Sum_probs=69.3
Q ss_pred CCCCCCCCCCC---CcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCc-cccc-----cCccccEEEEchhh
Q 004261 386 SNLCLPGSLQP---ELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGE-ELVA-----DSHLLPAVAIGRKM 456 (765)
Q Consensus 386 ~~~c~~~~~~~---~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~-~~~~-----~~~~~p~~~v~~~~ 456 (765)
.++|......+ ..+.|+|+|++||.|.|.+|..+++++||.++|++|+..... .... ....||+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 56798776644 789999999999999999999999999999999999875421 1111 24589999999999
Q ss_pred HHHHHHHHhcCCC
Q 004261 457 GDIVREYAKTVPN 469 (765)
Q Consensus 457 ~~~l~~~~~~~~~ 469 (765)
|+.|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987654
No 64
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.27 E-value=8.7e-06 Score=73.59 Aligned_cols=83 Identities=20% Similarity=0.259 Sum_probs=57.8
Q ss_pred ceEEEEEEEEecCCCceeEEEEEeC--------CCCc-----------eEEEEcCeEEEeecCeeEEEEEEEEEecCCC-
Q 004261 674 RVVRYTRELTNVGPARSLYNVTADG--------PSTV-----------GISVRPKRLLFRTVGEKKRYTVTFVAKNGDQ- 733 (765)
Q Consensus 674 ~~~~~~rtvtn~g~~~~ty~~~~~~--------~~g~-----------~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~- 733 (765)
...+++.+|+|.|+.+.+|+++... ..|. .++..|.+|++ ++|++++++|+|+++....
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHH
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCc
Confidence 5688999999999999999988761 1111 46667888999 8999999999999965222
Q ss_pred CCCCcEEEEEEEEC-Ccc-EEEEEEE
Q 004261 734 KMGGAAFGSIVWGN-AQH-QVRSPVA 757 (765)
Q Consensus 734 ~~~~~~~G~~~~~~-~~~-~v~~P~~ 757 (765)
..+.+++|+|.+++ ..+ .+++||+
T Consensus 87 ~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 87 SNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp TT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 12578999999997 444 8999996
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.10 E-value=2.9e-05 Score=71.80 Aligned_cols=91 Identities=20% Similarity=0.178 Sum_probs=70.1
Q ss_pred CeeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCc--chhhhhHHHhhcCccEEEEeecCCCCccc-----c
Q 004261 369 NKPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGIN--ARVEKGAVVRDAGGVGMILANTAASGEEL-----V 441 (765)
Q Consensus 369 ~~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-----~ 441 (765)
....+++|.+.. ....+...+++|||++++++.| .+..|..++.++||.|+|++|+....... .
T Consensus 22 ~~~~~lV~~g~G---------~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~ 92 (127)
T cd04819 22 EAKGEPVDAGYG---------LPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGT 92 (127)
T ss_pred CeeEEEEEeCCC---------CHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccc
Confidence 457788886642 2223335679999999999999 88999999999999999999876543211 1
Q ss_pred --ccCccccEEEEchhhHHHHHHHHhcCC
Q 004261 442 --ADSHLLPAVAIGRKMGDIVREYAKTVP 468 (765)
Q Consensus 442 --~~~~~~p~~~v~~~~~~~l~~~~~~~~ 468 (765)
.....+|++.|+..++..|.+.++.+.
T Consensus 93 ~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 93 EDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred cCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 223579999999999999999998754
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.46 E-value=0.00042 Score=64.61 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=61.2
Q ss_pred CCCcccCeEEEEeCCCc------chhhh-------hHHHhhcCccEEEEeecCC-------CCcccc-ccCccccEEEEc
Q 004261 395 QPELVRGKVVICDRGIN------ARVEK-------GAVVRDAGGVGMILANTAA-------SGEELV-ADSHLLPAVAIG 453 (765)
Q Consensus 395 ~~~~~~gkivl~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~n~~~-------~~~~~~-~~~~~~p~~~v~ 453 (765)
...+++|||++++++.| .+..+ ...+.++||.++|++|... .+.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 35689999999999999 88887 6899999999999998642 221111 223569999999
Q ss_pred hhhHHHHHHHHhcCCCceE
Q 004261 454 RKMGDIVREYAKTVPNPTA 472 (765)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~ 472 (765)
..+++.|.+.++.+..+.+
T Consensus 114 ~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 114 VEDADMLERLAARGKPIRV 132 (134)
T ss_pred hhcHHHHHHHHhCCCCeEE
Confidence 9999999999987765443
No 67
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=97.01 E-value=0.0017 Score=63.22 Aligned_cols=71 Identities=21% Similarity=0.167 Sum_probs=56.2
Q ss_pred CCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCC-c-----------------ccc----------------
Q 004261 396 PELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASG-E-----------------ELV---------------- 441 (765)
Q Consensus 396 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~-----------------~~~---------------- 441 (765)
..+++|||+|+++|.|.+.+|..+|+++||+|+|+|++..+. . .+.
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 457999999999999999999999999999999999885210 0 000
Q ss_pred ccCccccEEEEchhhHHHHHHHHhc
Q 004261 442 ADSHLLPAVAIGRKMGDIVREYAKT 466 (765)
Q Consensus 442 ~~~~~~p~~~v~~~~~~~l~~~~~~ 466 (765)
.....||++-|+..++..|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 0124688999999999999988753
No 68
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.89 E-value=0.0025 Score=59.48 Aligned_cols=63 Identities=21% Similarity=0.130 Sum_probs=52.0
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCc------------------chhhhhHHHhhcCccEEEEe
Q 004261 370 KPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGIN------------------ARVEKGAVVRDAGGVGMILA 431 (765)
Q Consensus 370 ~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~------------------~~~~~~~~~~~~Ga~g~i~~ 431 (765)
...++||.+.. .....|....+...+++||||++.+|.| .+..|...++++||.|+|++
T Consensus 20 ~~aelVfvGyG---i~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii 96 (142)
T cd04814 20 KDAPLVFVGYG---IKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIV 96 (142)
T ss_pred cceeeEEecCC---cCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 46788887642 2345688888888899999999999877 46679999999999999999
Q ss_pred ecCC
Q 004261 432 NTAA 435 (765)
Q Consensus 432 n~~~ 435 (765)
++..
T Consensus 97 ~~~~ 100 (142)
T cd04814 97 HELA 100 (142)
T ss_pred eCCC
Confidence 9876
No 69
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.65 E-value=0.0052 Score=57.02 Aligned_cols=64 Identities=27% Similarity=0.216 Sum_probs=51.8
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcc------------hhhhhHHHhhcCccEEEEeecCCC
Q 004261 370 KPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINA------------RVEKGAVVRDAGGVGMILANTAAS 436 (765)
Q Consensus 370 ~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~------------~~~~~~~~~~~Ga~g~i~~n~~~~ 436 (765)
..-++||.+.. .....|....+...+++|||||+.++.|. +..|..++.++||.|+|++++...
T Consensus 22 v~gelVfvGyG---~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 22 VEAPLVFVGYG---LVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred ceEeEEEecCC---cCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 46778887653 23467887788788999999999998863 568999999999999999998653
No 70
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.50 E-value=0.053 Score=47.80 Aligned_cols=92 Identities=24% Similarity=0.237 Sum_probs=67.5
Q ss_pred CCCCCceeeeccCcceEEEEEEEEecCCCceeEEEEEeCCCCceEEEEcCeEEEeecCeeEEEEEEEEEecCCCCCCCcE
Q 004261 660 ELNYPSFSVLFGDQRVVRYTRELTNVGPARSLYNVTADGPSTVGISVRPKRLLFRTVGEKKRYTVTFVAKNGDQKMGGAA 739 (765)
Q Consensus 660 ~ln~ps~~~~~~~~~~~~~~rtvtn~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~ 739 (765)
.|++..+.+ +...+.+.+|+|.|.....|++.........++++|..=.+ ++|++.+++|+|..... .+.+
T Consensus 10 ~ldFG~v~~----g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~~----~g~~ 80 (102)
T PF14874_consen 10 ELDFGNVFV----GQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTKP----LGDY 80 (102)
T ss_pred EEEeeEEcc----CCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCCC----CceE
Confidence 455444332 36777788999999999999997754334557778777656 89999999999995432 2357
Q ss_pred EEEEEEECCccEEEEEEEEEe
Q 004261 740 FGSIVWGNAQHQVRSPVAFSW 760 (765)
Q Consensus 740 ~G~~~~~~~~~~v~~P~~~~~ 760 (765)
.+.|...-.+..+.+|+-++.
T Consensus 81 ~~~l~i~~e~~~~~i~v~a~~ 101 (102)
T PF14874_consen 81 EGSLVITTEGGSFEIPVKAEV 101 (102)
T ss_pred EEEEEEEECCeEEEEEEEEEE
Confidence 788888776778888887764
No 71
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.47 E-value=0.0083 Score=56.73 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=50.9
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCC------------------cchhhhhHHHhhcCccEEEEe
Q 004261 370 KPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGI------------------NARVEKGAVVRDAGGVGMILA 431 (765)
Q Consensus 370 ~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~------------------~~~~~~~~~~~~~Ga~g~i~~ 431 (765)
..-++||.+.. .....|....+...+++|||||+.++. |.+..|..++.++||.|+|++
T Consensus 20 vtg~lVfvGyG---i~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~ 96 (151)
T cd04822 20 VTAPVVFAGYG---ITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVV 96 (151)
T ss_pred ceEeEEEecCC---cCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEE
Confidence 45678887642 334668777777889999999998763 566789999999999999999
Q ss_pred ecCCC
Q 004261 432 NTAAS 436 (765)
Q Consensus 432 n~~~~ 436 (765)
++...
T Consensus 97 ~d~~~ 101 (151)
T cd04822 97 NGPNS 101 (151)
T ss_pred eCCcc
Confidence 98764
No 72
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.15 E-value=0.017 Score=62.85 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=64.6
Q ss_pred CCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCC------CccccccCccccEEEEchhhHHHHHHHHhcCCC
Q 004261 396 PELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAAS------GEELVADSHLLPAVAIGRKMGDIVREYAKTVPN 469 (765)
Q Consensus 396 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~------~~~~~~~~~~~p~~~v~~~~~~~l~~~~~~~~~ 469 (765)
....++|++++.||.|.|.+|.+.++++||.++++.|+..+ ++........||+.++..++++++.....++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 46789999999999999999999999999999999999542 233344557899999999999999886666665
Q ss_pred ceEEE
Q 004261 470 PTALL 474 (765)
Q Consensus 470 ~~~~i 474 (765)
.++.+
T Consensus 171 V~~~l 175 (541)
T KOG2442|consen 171 VELAL 175 (541)
T ss_pred EEEEE
Confidence 54444
No 73
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.73 E-value=0.038 Score=46.20 Aligned_cols=61 Identities=21% Similarity=0.187 Sum_probs=39.3
Q ss_pred cceEEEEEEEEecCCCc-eeEEEEEeCCCCceEEEEcCeEEEeecCeeEEEEEEEEEecCCC
Q 004261 673 QRVVRYTRELTNVGPAR-SLYNVTADGPSTVGISVRPKRLLFRTVGEKKRYTVTFVAKNGDQ 733 (765)
Q Consensus 673 ~~~~~~~rtvtn~g~~~-~ty~~~~~~~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~ 733 (765)
+...+++.+|+|.|... ...++++..|.|-.+...|.++.-.++|++++++++|+++.+..
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~ 65 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAA 65 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCC
Confidence 36788999999999765 45888888999999888888887558999999999999986543
No 74
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=95.37 E-value=0.032 Score=56.27 Aligned_cols=58 Identities=31% Similarity=0.312 Sum_probs=47.0
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCCCC-----CCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCC
Q 004261 370 KPVSLVYNKGSNGSSSSNLCLPGSLQ-----PELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAAS 436 (765)
Q Consensus 370 ~~~~~v~~~~~~~~~~~~~c~~~~~~-----~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 436 (765)
...++||.+. |....++ ..+++|||+|+.+|.+.+..|..+++++||+|+|++++..+
T Consensus 45 v~g~lVyvny---------G~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 45 VTAELVYANY---------GSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred ceEEEEEcCC---------CcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 4678888654 4443332 46899999999999998899999999999999999998754
No 75
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=94.75 E-value=0.037 Score=51.76 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=37.2
Q ss_pred CcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCC
Q 004261 397 ELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAAS 436 (765)
Q Consensus 397 ~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 436 (765)
-+++|||+|++.|...+..|..++++.||.|+|+|.++.+
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d 76 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCD 76 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhh
Confidence 5799999999999999999999999999999999988654
No 76
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=93.99 E-value=0.071 Score=49.29 Aligned_cols=100 Identities=18% Similarity=0.195 Sum_probs=70.8
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCccc---------
Q 004261 370 KPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEEL--------- 440 (765)
Q Consensus 370 ~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~--------- 440 (765)
..+++|.+ +...+|.... +.....+.+.+++||.|+|..|..+++++||..+|+.+........
T Consensus 64 e~~~lV~a------dPp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D 136 (193)
T KOG3920|consen 64 ENLELVLA------DPPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPD 136 (193)
T ss_pred cCcceeec------CChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCc
Confidence 34566653 3466787643 2356788999999999999999999999999999998877654332
Q ss_pred -cccCccccEEEEchhhHHHHHHHHhcCCCceEEEEe
Q 004261 441 -VADSHLLPAVAIGRKMGDIVREYAKTVPNPTALLTF 476 (765)
Q Consensus 441 -~~~~~~~p~~~v~~~~~~~l~~~~~~~~~~~~~i~~ 476 (765)
..+...+|++.+-..+|..+..-++.-..+.+.|..
T Consensus 137 ~sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~I 173 (193)
T KOG3920|consen 137 ESQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDI 173 (193)
T ss_pred ccccccCCceEEEeccceEEEehhHHHhCCccEEEec
Confidence 123467899988888877666655554444444443
No 77
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.26 Score=52.69 Aligned_cols=82 Identities=18% Similarity=0.143 Sum_probs=63.5
Q ss_pred CCCCCCCCCC---CCcccCeEEEEeCCCcchhhhhHHHhhcCccEEEEeecCCCCccc----cccCccccEEEEchhhHH
Q 004261 386 SNLCLPGSLQ---PELVRGKVVICDRGINARVEKGAVVRDAGGVGMILANTAASGEEL----VADSHLLPAVAIGRKMGD 458 (765)
Q Consensus 386 ~~~c~~~~~~---~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~----~~~~~~~p~~~v~~~~~~ 458 (765)
.++|.+.... .......++++.||+|+|.+|..+++++|..++|++|+....... ......++.++++...|+
T Consensus 62 ~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge 141 (348)
T KOG4628|consen 62 LNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGE 141 (348)
T ss_pred ccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHH
Confidence 4678764331 345667799999999999999999999999999999987754322 234567889999999999
Q ss_pred HHHHHHhcC
Q 004261 459 IVREYAKTV 467 (765)
Q Consensus 459 ~l~~~~~~~ 467 (765)
.|.+|....
T Consensus 142 ~l~~~~~~~ 150 (348)
T KOG4628|consen 142 LLSSYAGRT 150 (348)
T ss_pred HHHHhhccc
Confidence 988875433
No 78
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=92.82 E-value=0.92 Score=41.12 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=41.4
Q ss_pred ceEEEEEEEEecCCCceeEEEEEeCCCCceEEEEcCeEEEeecCeeEEEEEEEEEecCC
Q 004261 674 RVVRYTRELTNVGPARSLYNVTADGPSTVGISVRPKRLLFRTVGEKKRYTVTFVAKNGD 732 (765)
Q Consensus 674 ~~~~~~rtvtn~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~ 732 (765)
-.-.++.+|+|.+..+.+|++++..++|+++......+++ ++|++..+.|.+.++...
T Consensus 31 I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 31 IRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHHH
Confidence 3556788999999999999999999889998554478888 899999999999998654
No 79
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=92.23 E-value=2.7 Score=38.39 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=54.5
Q ss_pred ceeeeccCcceEEEEEEEEecCCCceeEEEEEeC----CCC-ce-------------------EEEEcCeEEEeecCeeE
Q 004261 665 SFSVLFGDQRVVRYTRELTNVGPARSLYNVTADG----PST-VG-------------------ISVRPKRLLFRTVGEKK 720 (765)
Q Consensus 665 s~~~~~~~~~~~~~~rtvtn~g~~~~ty~~~~~~----~~g-~~-------------------v~v~p~~l~~~~~~~~~ 720 (765)
.|-+....+.+.+++.+|+|.++...+|.+++.. ..| +. +++ |..+++ ++++++
T Consensus 18 YFdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk 95 (121)
T PF06030_consen 18 YFDLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESK 95 (121)
T ss_pred eEEEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEE
Confidence 3333333357999999999999999999988641 112 11 111 556777 899999
Q ss_pred EEEEEEEEecCCCCCCCcEEEEEEEE
Q 004261 721 RYTVTFVAKNGDQKMGGAAFGSIVWG 746 (765)
Q Consensus 721 ~~~vt~~~~~~~~~~~~~~~G~~~~~ 746 (765)
+++++++.+...- .+..-|.|.+.
T Consensus 96 ~V~~~i~~P~~~f--~G~ilGGi~~~ 119 (121)
T PF06030_consen 96 TVTFTIKMPKKAF--DGIILGGIYFS 119 (121)
T ss_pred EEEEEEEcCCCCc--CCEEEeeEEEE
Confidence 9999999887544 45677887765
No 80
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=91.68 E-value=0.71 Score=44.11 Aligned_cols=63 Identities=16% Similarity=0.041 Sum_probs=42.3
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCCCCCCcccCeEEEEeCCCcch-------------------hhhhHHHhhcCccEEEE
Q 004261 370 KPVSLVYNKGSNGSSSSNLCLPGSLQPELVRGKVVICDRGINAR-------------------VEKGAVVRDAGGVGMIL 430 (765)
Q Consensus 370 ~~~~~v~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~-------------------~~~~~~~~~~Ga~g~i~ 430 (765)
...++||.+-.- ....-....+...|++||||++.++...+ ..|...+.+.||.|+|+
T Consensus 22 ~~~elVFvGyGi---~ape~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~ 98 (157)
T cd04821 22 KDSPLVFVGYGI---VAPEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALI 98 (157)
T ss_pred ccCCEEEeccCc---cCcccCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEE
Confidence 456777766431 11111223455689999999998765422 23899999999999999
Q ss_pred eecCC
Q 004261 431 ANTAA 435 (765)
Q Consensus 431 ~n~~~ 435 (765)
+.+..
T Consensus 99 v~~~~ 103 (157)
T cd04821 99 VHETE 103 (157)
T ss_pred EeCCC
Confidence 97754
No 81
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=89.61 E-value=8 Score=35.09 Aligned_cols=53 Identities=17% Similarity=0.105 Sum_probs=40.7
Q ss_pred eEEEEEEEEecCCCceeEEEEEeC---CCC----ceEEEEcCeEEEeecCeeEEEEEEEEEe
Q 004261 675 VVRYTRELTNVGPARSLYNVTADG---PST----VGISVRPKRLLFRTVGEKKRYTVTFVAK 729 (765)
Q Consensus 675 ~~~~~rtvtn~g~~~~ty~~~~~~---~~g----~~v~v~p~~l~~~~~~~~~~~~vt~~~~ 729 (765)
..+.+.+|+|.++.+..+.+.+.. ..+ -.+.|+|..+.+ ++|+++++.| +...
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~ 74 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGS 74 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECS
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecC
Confidence 446678999999988788777764 111 257789999999 7999999999 6633
No 82
>COG1470 Predicted membrane protein [Function unknown]
Probab=88.94 E-value=2.9 Score=46.10 Aligned_cols=71 Identities=20% Similarity=0.170 Sum_probs=57.3
Q ss_pred cceEEEEEEEEecCCCcee-EEEEEeCCCCceEEEEcCeEEEeecCeeEEEEEEEEEecCCCCCCCcEEEEEEE
Q 004261 673 QRVVRYTRELTNVGPARSL-YNVTADGPSTVGISVRPKRLLFRTVGEKKRYTVTFVAKNGDQKMGGAAFGSIVW 745 (765)
Q Consensus 673 ~~~~~~~rtvtn~g~~~~t-y~~~~~~~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~~~~ 745 (765)
+...+....+.|.|+.+.| -++++..|.|-++.|.|.++--.++|+.+++.+|++++.+.. .+.++=.|+-
T Consensus 396 Gee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~--aGdY~i~i~~ 467 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAG--AGDYRITITA 467 (513)
T ss_pred CccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCC--CCcEEEEEEE
Confidence 5688888999999988765 578999999999999999887679999999999999987655 2334444444
No 83
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=80.21 E-value=1.2 Score=52.72 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=33.8
Q ss_pred cCeEEEeecCeeEEEEEEEEEecCCCCCCCcEEEEEEEEC-----CccEEEEEEEEEec
Q 004261 708 PKRLLFRTVGEKKRYTVTFVAKNGDQKMGGAAFGSIVWGN-----AQHQVRSPVAFSWT 761 (765)
Q Consensus 708 p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~~~~~~-----~~~~v~~P~~~~~~ 761 (765)
|+.|.+ .++.+.+.|+|++..... +..|++|.--| .+...|+|+.|...
T Consensus 636 p~~l~l--~~~~R~i~VrVDpt~l~~---G~hy~eV~gyD~~~p~~gplFrIPVTVi~P 689 (1304)
T KOG1114|consen 636 PEYLML--ANQGRGINVRVDPTGLAP---GVHYTEVLGYDTANPSRGPLFRIPVTVIKP 689 (1304)
T ss_pred chhhee--ccCCceeEEEECCcCCCC---CcceEEEEEeecCCcccCceEEeeeEEEcc
Confidence 666655 677888888888765443 35667665543 56889999987643
No 84
>COG1470 Predicted membrane protein [Function unknown]
Probab=76.93 E-value=27 Score=38.79 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=47.6
Q ss_pred cceEEEEEEEEecCCCceeEEEEEe-CCCCceEEEEcC-----eEEEeecCeeEEEEEEEEEecCCC
Q 004261 673 QRVVRYTRELTNVGPARSLYNVTAD-GPSTVGISVRPK-----RLLFRTVGEKKRYTVTFVAKNGDQ 733 (765)
Q Consensus 673 ~~~~~~~rtvtn~g~~~~ty~~~~~-~~~g~~v~v~p~-----~l~~~~~~~~~~~~vt~~~~~~~~ 733 (765)
..+..+++++.|.|..+.+|.+++. .|+|......-. ++.+ ++||+++|+|.+.++....
T Consensus 283 ~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~na~ 348 (513)
T COG1470 283 STTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLNAT 348 (513)
T ss_pred CCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCCCC
Confidence 3577889999999999999999998 788866554422 4555 6999999999999876544
No 85
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=76.80 E-value=14 Score=32.49 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=40.5
Q ss_pred ceEEEEEEEEecCCCceeEEEEEeCCCCceEEEEcCeEEEeecCeeEEEEEEEEEec
Q 004261 674 RVVRYTRELTNVGPARSLYNVTADGPSTVGISVRPKRLLFRTVGEKKRYTVTFVAKN 730 (765)
Q Consensus 674 ~~~~~~rtvtn~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~ 730 (765)
.......+|+|.++...-|++....|..+ .|.|..-.+ ++|++.+++|++....
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE--TTEEEEEEEEE-SSS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEE-CCCCEEEEEEEEEecc
Confidence 45667789999999999999998888754 567998777 7999999999888643
No 86
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=74.19 E-value=11 Score=42.28 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=48.3
Q ss_pred ceEEEEEEEEecCCCceeEEEEEeCCCCceEEEEcCeEEEeecCeeEEEEEEEEEecC
Q 004261 674 RVVRYTRELTNVGPARSLYNVTADGPSTVGISVRPKRLLFRTVGEKKRYTVTFVAKNG 731 (765)
Q Consensus 674 ~~~~~~rtvtn~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~ 731 (765)
-.-.++..+.|.++.+.+|+++++..++.++...++.+++ ++||+.++.|++..+..
T Consensus 346 i~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~~ 402 (434)
T TIGR02745 346 VENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPPD 402 (434)
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEechh
Confidence 3556788899999999999999999889888765457888 79999999999988753
No 87
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=70.92 E-value=33 Score=31.94 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=51.1
Q ss_pred eEEEEEEEEecCCCc-eeEEEEEeCCCCceEEEEcCeEEEeecCeeEEEEEEEEEecCCCCCCCcEEEEEEEEC
Q 004261 675 VVRYTRELTNVGPAR-SLYNVTADGPSTVGISVRPKRLLFRTVGEKKRYTVTFVAKNGDQKMGGAAFGSIVWGN 747 (765)
Q Consensus 675 ~~~~~rtvtn~g~~~-~ty~~~~~~~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~~~~~~ 747 (765)
...+...+-|-.+.. ..-++......++++--.|..+++ .+++.++++.+|++.... .+..||.|++..
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsSte---tGvIfG~I~Yd~ 139 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSSTE---TGVIFGNIVYDG 139 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEecc---CCEEEEEEEEec
Confidence 445555666765433 234555556677888888999998 799999999999998754 468999999863
No 88
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=55.74 E-value=32 Score=28.66 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=29.6
Q ss_pred eEEEEcCeEEEeecCeeEEEEEEEEEecCCCCCCCcEEEEEEEECCcc
Q 004261 703 GISVRPKRLLFRTVGEKKRYTVTFVAKNGDQKMGGAAFGSIVWGNAQH 750 (765)
Q Consensus 703 ~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~~~~~~~~~ 750 (765)
.+++.|..+++ ..|+++.|+++++... ..- ...+.|+..+.
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~-----~~~-~~~v~w~Ssn~ 44 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSS-----AKV-TGKVTWTSSNP 44 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCC-----CCc-cceEEEEECCC
Confidence 47788999999 6999999999965332 112 67788876443
No 89
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=53.22 E-value=75 Score=27.00 Aligned_cols=53 Identities=19% Similarity=0.139 Sum_probs=32.9
Q ss_pred cceEEEEEEEEecCCCc-eeEEEEEeCCCCceEEEEcCeE-EEeecCeeEEEEEEEEEe
Q 004261 673 QRVVRYTRELTNVGPAR-SLYNVTADGPSTVGISVRPKRL-LFRTVGEKKRYTVTFVAK 729 (765)
Q Consensus 673 ~~~~~~~rtvtn~g~~~-~ty~~~~~~~~g~~v~v~p~~l-~~~~~~~~~~~~vt~~~~ 729 (765)
+...+++.+|+|.|... ..+.+.+... |..+ .-..+ .+ ++|+++++++++...
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 47888999999999864 5566666543 2222 12223 34 789999888888875
No 90
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=52.26 E-value=47 Score=24.33 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=24.7
Q ss_pred EEEEecCCCceeEEEEEeCCCCceEEEEcCeEEEeecCeeEEEEEEE
Q 004261 680 RELTNVGPARSLYNVTADGPSTVGISVRPKRLLFRTVGEKKRYTVTF 726 (765)
Q Consensus 680 rtvtn~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~~~~~~~~vt~ 726 (765)
.+++|+|+....-. .+...=|= .+++.+.=.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~-~v~tsCgC-t~~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTSCGC-TTAEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEccCC-EEeeCCcceE-CCCCEEEEEEEC
Confidence 46899998765432 22222222 1223333234 799999988874
No 91
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=51.01 E-value=1.3e+02 Score=26.35 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=35.2
Q ss_pred cceEEEEEEEEecCCCc-eeEE-----EEEeCCCCce---EEEEcCeEEEeecCeeEEEEEEEEEec
Q 004261 673 QRVVRYTRELTNVGPAR-SLYN-----VTADGPSTVG---ISVRPKRLLFRTVGEKKRYTVTFVAKN 730 (765)
Q Consensus 673 ~~~~~~~rtvtn~g~~~-~ty~-----~~~~~~~g~~---v~v~p~~l~~~~~~~~~~~~vt~~~~~ 730 (765)
+...++..+++|..+.. .+-+ .++.-+ |+. ....-..+++ ++|++.++++++....
T Consensus 14 G~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~yt-G~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYT-GLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EECEEEEEEEEEEECT-TTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCCEEEEEEEEeCCcCccccceeEEEEEEEEEC-CcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 47888999999999877 5422 223333 553 4445555666 7999999999988643
No 92
>PLN03080 Probable beta-xylosidase; Provisional
Probab=38.70 E-value=1e+02 Score=37.70 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=32.7
Q ss_pred eEEEEEEEEecCCCceeEEEEE--eCCCCceEEEEc-C------eEEEeecCeeEEEEEEEEE
Q 004261 675 VVRYTRELTNVGPARSLYNVTA--DGPSTVGISVRP-K------RLLFRTVGEKKRYTVTFVA 728 (765)
Q Consensus 675 ~~~~~rtvtn~g~~~~ty~~~~--~~~~g~~v~v~p-~------~l~~~~~~~~~~~~vt~~~ 728 (765)
..+++.+|||+|+.+....+.+ ..|... +. .| + ++.+ ++||++++++++..
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~-~~-~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVV-PG-VPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccC-CC-CcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 5788999999998765555443 333221 11 12 2 2334 79999999888875
No 93
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=37.73 E-value=1.6e+02 Score=26.12 Aligned_cols=66 Identities=24% Similarity=0.291 Sum_probs=44.1
Q ss_pred eeec-CCCeEEEEEeeccCCCChHHHHHHHHHHHhCCCcEEEeccCCCC------CCCcccHHHHHHHHHHhC-CcEEEE
Q 004261 242 RGMA-THARVATYKVCWKTGCFGSDILAGIDRAIQDGVDVLSMSLGGGS------APYYRDTIAVGAFAAMEK-GIVVSC 313 (765)
Q Consensus 242 ~GvA-P~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~------~~~~~~~~~~a~~~a~~~-Gi~vV~ 313 (765)
.+.. ++++|+.+ +.+.||....++.-+++..+.|+|+|-+|-.... -|+ .+.+... ..++ |+-||.
T Consensus 31 ~~y~~~~~elvgf--~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~-~~~~~~~---I~~~~gi~VV~ 104 (107)
T PF08821_consen 31 ARYDDEDVELVGF--FTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPH-IDEIKKI---IEEKFGIEVVE 104 (107)
T ss_pred ccCCCCCeEEEEE--eeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCC-HHHHHHH---HHHHhCCCEee
Confidence 4444 46777765 5566788999999999999999999999866432 133 2333333 2334 887774
No 94
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=36.20 E-value=35 Score=24.53 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=18.9
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcc
Q 004261 555 AALLKAAHPDWSPSAIKSALMTTA 578 (765)
Q Consensus 555 aALl~~~~P~~sp~~ik~~L~~TA 578 (765)
+--|++.+|+|++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345788999999999999997654
No 95
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=36.00 E-value=1.7e+02 Score=22.28 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=24.5
Q ss_pred cceEEEEEEEEecCCCcee-EEEEEeCCCCceEEEEcCeEEE
Q 004261 673 QRVVRYTRELTNVGPARSL-YNVTADGPSTVGISVRPKRLLF 713 (765)
Q Consensus 673 ~~~~~~~rtvtn~g~~~~t-y~~~~~~~~g~~v~v~p~~l~~ 713 (765)
+...+++.+++|.|....+ ..+.=..|+|+.. .|.++++
T Consensus 11 Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPATNVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred CCEEEEEEEEEECCCCceEeEEEEEcCCCCCEE--EeCcEEE
Confidence 4788999999999986654 2233334666544 3444443
No 96
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=34.25 E-value=2.7e+02 Score=23.35 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=23.8
Q ss_pred EEEEEEEecCCCce--------eEEEEEeCCCCceEE---------EEcCeEEEeecCeeEEEEEEEEEec
Q 004261 677 RYTRELTNVGPARS--------LYNVTADGPSTVGIS---------VRPKRLLFRTVGEKKRYTVTFVAKN 730 (765)
Q Consensus 677 ~~~rtvtn~g~~~~--------ty~~~~~~~~g~~v~---------v~p~~l~~~~~~~~~~~~vt~~~~~ 730 (765)
.++.+|+|.++... .|.+.+....|-.|- -.-...++ ++||+++|+.++....
T Consensus 3 ~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS--
T ss_pred EEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECCCC
Confidence 45667777776543 234444434443322 11223455 7899888888776543
No 97
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=30.48 E-value=1.1e+02 Score=37.29 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=34.1
Q ss_pred ceEEEEEEEEecCCCceeEEEE--EeCCCCceEEEEcC-------eEEEeecCeeEEEEEEEEEe
Q 004261 674 RVVRYTRELTNVGPARSLYNVT--ADGPSTVGISVRPK-------RLLFRTVGEKKRYTVTFVAK 729 (765)
Q Consensus 674 ~~~~~~rtvtn~g~~~~ty~~~--~~~~~g~~v~v~p~-------~l~~~~~~~~~~~~vt~~~~ 729 (765)
...+++.+|||+|+.+..-.+. +..|.+- +. .|. ++.+ ++||++++++++...
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~ 728 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGETQTVSFPIDIE 728 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCCeEEEEEeecHH
Confidence 5688999999999865443333 3334321 11 232 2344 799999999888864
No 98
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=30.41 E-value=22 Score=16.12 Aligned_cols=6 Identities=67% Similarity=0.972 Sum_probs=4.1
Q ss_pred eccCCC
Q 004261 491 AFSSRG 496 (765)
Q Consensus 491 ~fSS~G 496 (765)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 99
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=29.45 E-value=1.3e+02 Score=24.51 Aligned_cols=31 Identities=35% Similarity=0.484 Sum_probs=20.9
Q ss_pred cceEEEEEEEEecCCCceeEEEEEe--CCCCceE
Q 004261 673 QRVVRYTRELTNVGPARSLYNVTAD--GPSTVGI 704 (765)
Q Consensus 673 ~~~~~~~rtvtn~g~~~~ty~~~~~--~~~g~~v 704 (765)
+...+++++|+|.|+... ..+.+. .|+|+.+
T Consensus 40 Gd~v~ytitvtN~G~~~a-~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAPA-TNVVVTDTLPAGLTF 72 (76)
T ss_pred CCEEEEEEEEEECCCCee-EeEEEEEcCCCCCEE
Confidence 478999999999998663 234443 4666543
No 100
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=29.21 E-value=99 Score=27.02 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=28.3
Q ss_pred ceEEEEEEEEecCCCce----eEEE-EEe--------CCCCceEEEEcC--eEEEeecCeeEEEEEE
Q 004261 674 RVVRYTRELTNVGPARS----LYNV-TAD--------GPSTVGISVRPK--RLLFRTVGEKKRYTVT 725 (765)
Q Consensus 674 ~~~~~~rtvtn~g~~~~----ty~~-~~~--------~~~g~~v~v~p~--~l~~~~~~~~~~~~vt 725 (765)
+..+.+.+|+|+|+.+. -|++ ++. ..-|..+.+ |+ .+.| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 82 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDI-PAGTAVRF-EPGEEKEVELV 82 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecc-cCCCeEEE-CCCCeEEEEEE
Confidence 45677889999999753 3432 111 111222222 21 3456 78999987773
No 101
>PRK13203 ureB urease subunit beta; Reviewed
Probab=28.32 E-value=96 Score=27.13 Aligned_cols=50 Identities=14% Similarity=0.271 Sum_probs=28.0
Q ss_pred ceEEEEEEEEecCCCce----eEEEE-Ee--------CCCCceEEEEcC--eEEEeecCeeEEEEEE
Q 004261 674 RVVRYTRELTNVGPARS----LYNVT-AD--------GPSTVGISVRPK--RLLFRTVGEKKRYTVT 725 (765)
Q Consensus 674 ~~~~~~rtvtn~g~~~~----ty~~~-~~--------~~~g~~v~v~p~--~l~~~~~~~~~~~~vt 725 (765)
+..+++.+|+|+|+.+. -|++- +. ..-|..+.+ |+ .+.| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 82 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNI-PAGTAVRF-EPGQTREVELV 82 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 45667889999999753 34321 11 111222222 21 3456 78999987763
No 102
>PRK15019 CsdA-binding activator; Provisional
Probab=26.40 E-value=56 Score=30.86 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=26.8
Q ss_pred eccccchhhhhhhHHHHHHhhCCCCCHHHHHH
Q 004261 541 MSGTSMSCPHLSGVAALLKAAHPDWSPSAIKS 572 (765)
Q Consensus 541 ~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~ 572 (765)
+.|.| =|+.|-|.+|||.+.+-+.+|++|.+
T Consensus 79 f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 79 FFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 34555 67999999999999999999999975
No 103
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=26.34 E-value=1.1e+02 Score=26.67 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=28.2
Q ss_pred ceEEEEEEEEecCCCce----eEEEE-Ee--------CCCCceEEEEcC--eEEEeecCeeEEEEEE
Q 004261 674 RVVRYTRELTNVGPARS----LYNVT-AD--------GPSTVGISVRPK--RLLFRTVGEKKRYTVT 725 (765)
Q Consensus 674 ~~~~~~rtvtn~g~~~~----ty~~~-~~--------~~~g~~v~v~p~--~l~~~~~~~~~~~~vt 725 (765)
+..+.+.+|+|+|+.+. -|++- +. ..-|..+.+ |+ .+.| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 82 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDI-PSGTAVRF-EPGEEKSVELV 82 (101)
T ss_pred CCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 45667889999999753 34321 11 111222222 21 3456 78999987773
No 104
>PRK13202 ureB urease subunit beta; Reviewed
Probab=25.11 E-value=1.2e+02 Score=26.54 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=27.2
Q ss_pred EEEEEEEEecCCCce----eEEEE-Ee--------CCCCceEEEEcC--eEEEeecCeeEEEEEE
Q 004261 676 VRYTRELTNVGPARS----LYNVT-AD--------GPSTVGISVRPK--RLLFRTVGEKKRYTVT 725 (765)
Q Consensus 676 ~~~~rtvtn~g~~~~----ty~~~-~~--------~~~g~~v~v~p~--~l~~~~~~~~~~~~vt 725 (765)
.+++.+|+|+|+.+. -|++- +. ..-|..+.+ |+ .+.| ++|+++++++.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDI-PAATAVRF-EPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCccccc-CCCCeEEE-CCCCeEEEEEE
Confidence 577889999999753 34431 11 111222222 11 3456 78999987763
No 105
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=24.79 E-value=64 Score=30.16 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=27.4
Q ss_pred EeccccchhhhhhhHHHHHHhhCCCCCHHHHHH
Q 004261 540 IMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKS 572 (765)
Q Consensus 540 ~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~ 572 (765)
.+.|.| =|+.|-|++|||.+.+-+.+|++|.+
T Consensus 73 ~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~ 104 (138)
T TIGR03391 73 HFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLA 104 (138)
T ss_pred EEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 344666 58999999999999999999999874
No 106
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=24.18 E-value=61 Score=24.99 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=21.7
Q ss_pred EEeccccchhhhhhhHHH------HHHhhCCCCCHHHHHHHHH
Q 004261 539 NIMSGTSMSCPHLSGVAA------LLKAAHPDWSPSAIKSALM 575 (765)
Q Consensus 539 ~~~sGTSmAaP~VAG~aA------Ll~~~~P~~sp~~ik~~L~ 575 (765)
-.+.||=+..=.|....+ -+.+.||++++++|+++|.
T Consensus 12 P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 12 PVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp -EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred ceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 345566665555544432 2455799999999999884
No 107
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.11 E-value=2.9e+02 Score=30.16 Aligned_cols=53 Identities=17% Similarity=0.358 Sum_probs=34.4
Q ss_pred EEEEEEEEecCCCceeEEEEEe-CCCCceEEEEcCeEEEeecCe--eEEEEEEEEEe
Q 004261 676 VRYTRELTNVGPARSLYNVTAD-GPSTVGISVRPKRLLFRTVGE--KKRYTVTFVAK 729 (765)
Q Consensus 676 ~~~~rtvtn~g~~~~ty~~~~~-~~~g~~v~v~p~~l~~~~~~~--~~~~~vt~~~~ 729 (765)
..+..-+++-+.+...-.+.++ -|.|++++|.|+..+++ -++ ++.|.|++...
T Consensus 92 FkV~ADLt~a~~Gt~evkl~ve~l~~~ltvsV~P~~~~Vt-i~kk~tkk~~V~vei~ 147 (403)
T COG4856 92 FKVVADLTHAGVGTHEVKLQVEGLPDGLTVSVNPEKATVT-IEKKVTKKFPVSVEID 147 (403)
T ss_pred eEEEEEhhhcCCCceEeeeEeecCCCCceEEEccceeEEE-EeeeeEEEEeeeEEEc
Confidence 3444556777765555555554 38899999999988773 444 45566666554
No 108
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=23.65 E-value=1.1e+02 Score=26.64 Aligned_cols=17 Identities=35% Similarity=0.270 Sum_probs=12.3
Q ss_pred ceEEEEEEEEecCCCce
Q 004261 674 RVVRYTRELTNVGPARS 690 (765)
Q Consensus 674 ~~~~~~rtvtn~g~~~~ 690 (765)
+..+++.+|+|+|+.+.
T Consensus 17 gr~~~~l~V~N~GDRPI 33 (100)
T PF00699_consen 17 GRERITLEVTNTGDRPI 33 (100)
T ss_dssp TSEEEEEEEEE-SSS-E
T ss_pred CCcEEEEEEEeCCCcce
Confidence 56778899999999753
No 109
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=23.55 E-value=56 Score=22.25 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=10.7
Q ss_pred chhhhhhhHHHHH
Q 004261 546 MSCPHLSGVAALL 558 (765)
Q Consensus 546 mAaP~VAG~aALl 558 (765)
.|||.+||++|-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998754
No 110
>PF08586 Rsc14: RSC complex, Rsc14/Ldb7 subunit; InterPro: IPR013895 RSC is an ATP-dependent chromatin remodelling complex found in yeast. The RSC components Rsc7/Npl6 and Rsc14/Ldb7 interact physically and/or functionally with Rsc3, Rsc30, and Htl1 to form a module important for a broad range of RSC functions [].
Probab=23.54 E-value=81 Score=27.31 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=44.5
Q ss_pred hhhhHHHHHHhhCCCCCHHHHHHHHHhcceeccCCCCC-CC--CCCCCCCCCCCcCCCcccCccccCCCCccccCC
Q 004261 550 HLSGVAALLKAAHPDWSPSAIKSALMTTAYVVDNTKSP-LH--DAADGRLSTPWAHGSGHVNPQKAISPGLVYDAS 622 (765)
Q Consensus 550 ~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~-~~--~~~~~~~~~~~~~G~G~vd~~~Al~~glv~~~~ 622 (765)
.+||.+||=++..=.+|+.|++.+-.+.-........+ +. +......-+...|=.|.||+..|-+.. ||..
T Consensus 6 vIagLsalE~S~~Vtfs~~eL~eLt~~~~~~r~~~~~~~~~~~~~~~~kRv~VHgYLGGkvd~~~a~~a~--Ydl~ 79 (101)
T PF08586_consen 6 VIAGLSALERSHQVTFSQEELQELTKQEKDNRKDRDDPELKRKDEKKSKRVPVHGYLGGKVDLKDASNAT--YDLS 79 (101)
T ss_pred HhhchHhhhcccccccCHHHHHHHHhchhhhhhhccchhhhhccccccceeeeeeecCCcCCHHHHHhhh--hccc
Confidence 47899999999999999999999887665332221110 11 111122223334545999999987754 6655
No 111
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=22.16 E-value=76 Score=29.64 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=26.7
Q ss_pred eccccchhhhhhhHHHHHHhhCCCCCHHHHHH
Q 004261 541 MSGTSMSCPHLSGVAALLKAAHPDWSPSAIKS 572 (765)
Q Consensus 541 ~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~ 572 (765)
+.|.| =|+.|-|.+||+.+.+-..||++|.+
T Consensus 69 f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 69 LQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 34556 68999999999999999999999864
No 112
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=21.61 E-value=3.1e+02 Score=28.08 Aligned_cols=53 Identities=11% Similarity=0.175 Sum_probs=37.4
Q ss_pred eEEEEEEEEecCCCceeEEEEEe---CC---CC----------ceEEEEcCeEEEeecCeeEEEEEEEEE
Q 004261 675 VVRYTRELTNVGPARSLYNVTAD---GP---ST----------VGISVRPKRLLFRTVGEKKRYTVTFVA 728 (765)
Q Consensus 675 ~~~~~rtvtn~g~~~~ty~~~~~---~~---~g----------~~v~v~p~~l~~~~~~~~~~~~vt~~~ 728 (765)
......+|.|.|+.+..+++++. .| .+ -.+-++|..|.+ ++|+++.+.|.-..
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg 100 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQ 100 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcC
Confidence 44456789999998887777664 22 11 146678999999 79999888875443
No 113
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=21.60 E-value=1.2e+02 Score=21.68 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.2
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhcc
Q 004261 554 VAALLKAAHPDWSPSAIKSALMTTA 578 (765)
Q Consensus 554 ~aALl~~~~P~~sp~~ik~~L~~TA 578 (765)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567889999999999999998644
No 114
>PF15284 PAGK: Phage-encoded virulence factor
Probab=20.86 E-value=66 Score=25.21 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=7.5
Q ss_pred Cchhh--HHHHHHHHh
Q 004261 1 MASFF--FFTGLLLLL 14 (765)
Q Consensus 1 ~~~~~--~~~l~l~l~ 14 (765)
||+++ ||.++|.|.
T Consensus 1 Mkk~ksifL~l~~~Ls 16 (61)
T PF15284_consen 1 MKKFKSIFLALVFILS 16 (61)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 78776 444444444
No 115
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.67 E-value=79 Score=29.63 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=24.9
Q ss_pred eccccchhhhhhhHHHHHHhhCCCCCHHHHH
Q 004261 541 MSGTSMSCPHLSGVAALLKAAHPDWSPSAIK 571 (765)
Q Consensus 541 ~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik 571 (765)
+.|=| =|+.|.|.+|++++.+-..||++|.
T Consensus 74 F~gdS-dA~ivrGL~aill~~~~G~t~~eI~ 103 (144)
T COG2166 74 FFGDS-DARIVRGLLAILLAAYSGKTAAEIL 103 (144)
T ss_pred Eeccc-hhHHHHHHHHHHHHHHcCCCHHHHH
Confidence 33444 3689999999999999999999985
No 116
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=20.53 E-value=91 Score=28.57 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=26.0
Q ss_pred EeccccchhhhhhhHHHHHHhhCCCCCHHHHHHH
Q 004261 540 IMSGTSMSCPHLSGVAALLKAAHPDWSPSAIKSA 573 (765)
Q Consensus 540 ~~sGTSmAaP~VAG~aALl~~~~P~~sp~~ik~~ 573 (765)
.+.|.|= |+.|-|++||+.+.+-+.+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4445554 67999999999999999999998753
No 117
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.27 E-value=6.3e+02 Score=24.77 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=43.8
Q ss_pred cceEEEEEEEEecCCCceeEEEEEeC----CCCceEEE--EcCeEEEeecCeeEEEEEEEEEecCCCCCCCcEEE--EEE
Q 004261 673 QRVVRYTRELTNVGPARSLYNVTADG----PSTVGISV--RPKRLLFRTVGEKKRYTVTFVAKNGDQKMGGAAFG--SIV 744 (765)
Q Consensus 673 ~~~~~~~rtvtn~g~~~~ty~~~~~~----~~g~~v~v--~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G--~~~ 744 (765)
+...+++.+|.|+|+. .-|.+++.. ++.+++.- ...++.--++|+..+.++++++... |.+.++ .++
T Consensus 37 g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~----G~f~~~~a~Vt 111 (181)
T PF05753_consen 37 GEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKKS----GYFNFTPAVVT 111 (181)
T ss_pred CcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeeee----EEEEccCEEEE
Confidence 4788999999999985 467777764 24444311 1122333378998888888886542 445554 345
Q ss_pred EEC
Q 004261 745 WGN 747 (765)
Q Consensus 745 ~~~ 747 (765)
..+
T Consensus 112 Y~~ 114 (181)
T PF05753_consen 112 YRD 114 (181)
T ss_pred EEC
Confidence 544
Done!