Query 004263
Match_columns 765
No_of_seqs 398 out of 2096
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 20:23:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2263 Methionine synthase II 100.0 2E-212 5E-217 1660.5 63.1 763 1-763 2-764 (765)
2 PLN02475 5-methyltetrahydropte 100.0 2E-194 5E-199 1693.4 85.2 762 1-764 1-765 (766)
3 PRK05222 5-methyltetrahydropte 100.0 5E-189 1E-193 1659.3 83.7 754 1-762 2-757 (758)
4 TIGR01371 met_syn_B12ind 5-met 100.0 3E-186 6E-191 1634.0 83.1 747 6-759 1-749 (750)
5 cd03312 CIMS_N_terminal_like C 100.0 6.1E-96 1E-100 803.2 38.9 359 2-367 1-360 (360)
6 PF08267 Meth_synt_1: Cobalami 100.0 4.9E-91 1.1E-95 741.2 28.4 308 2-316 1-309 (310)
7 COG0620 MetE Methionine syntha 100.0 2.3E-79 5E-84 659.4 34.5 330 428-760 1-330 (330)
8 PRK01207 methionine synthase; 100.0 2E-74 4.3E-79 619.2 35.8 314 431-761 3-343 (343)
9 PRK09121 5-methyltetrahydropte 100.0 4.5E-66 9.6E-71 562.7 35.7 317 431-762 2-339 (339)
10 PRK08575 5-methyltetrahydropte 100.0 1.1E-64 2.4E-69 550.1 35.3 310 2-367 5-322 (326)
11 PF01717 Meth_synt_2: Cobalami 100.0 7.5E-62 1.6E-66 529.7 31.3 322 432-756 1-324 (324)
12 PRK08575 5-methyltetrahydropte 100.0 5.4E-61 1.2E-65 521.3 34.7 313 431-758 2-323 (326)
13 PRK06520 5-methyltetrahydropte 100.0 2E-60 4.4E-65 523.7 33.0 326 429-758 5-368 (368)
14 PRK06233 hypothetical protein; 100.0 3.2E-60 7E-65 523.3 33.6 325 430-758 7-371 (372)
15 PRK04326 methionine synthase; 100.0 3.4E-58 7.3E-63 502.3 36.8 324 426-762 3-327 (330)
16 cd03311 CIMS_C_terminal_like C 100.0 8.6E-57 1.9E-61 491.7 27.8 314 433-755 1-331 (332)
17 cd03312 CIMS_N_terminal_like C 100.0 4E-55 8.7E-60 480.4 33.9 296 434-743 2-331 (360)
18 TIGR01371 met_syn_B12ind 5-met 100.0 8.1E-52 1.8E-56 489.9 34.0 314 2-369 424-748 (750)
19 PRK05222 5-methyltetrahydropte 100.0 1.7E-50 3.7E-55 479.1 35.5 312 433-759 3-364 (758)
20 PLN02475 5-methyltetrahydropte 100.0 1.1E-49 2.4E-54 469.3 33.8 314 434-757 2-369 (766)
21 PRK00957 methionine synthase; 100.0 1.1E-49 2.3E-54 430.6 30.1 295 432-758 2-305 (305)
22 PRK04326 methionine synthase; 100.0 6.3E-49 1.4E-53 429.3 32.6 309 2-369 10-323 (330)
23 PRK09121 5-methyltetrahydropte 100.0 9.3E-49 2E-53 426.8 33.1 313 2-369 5-335 (339)
24 cd03310 CIMS_like CIMS - Cobal 100.0 2.4E-47 5.1E-52 415.3 25.7 307 1-366 1-320 (321)
25 PRK06052 5-methyltetrahydropte 100.0 4.5E-47 9.8E-52 400.6 26.1 292 432-760 4-343 (344)
26 PRK06520 5-methyltetrahydropte 100.0 4.1E-46 8.8E-51 410.3 30.9 317 2-367 10-366 (368)
27 PRK06233 hypothetical protein; 100.0 1.1E-44 2.4E-49 399.8 31.3 324 3-367 12-369 (372)
28 COG0620 MetE Methionine syntha 100.0 1.5E-44 3.1E-49 389.6 31.0 315 2-369 7-328 (330)
29 cd03310 CIMS_like CIMS - Cobal 100.0 1.4E-44 3E-49 393.6 25.0 305 434-755 2-320 (321)
30 cd03311 CIMS_C_terminal_like C 100.0 2.2E-44 4.7E-49 393.9 26.3 311 2-366 2-331 (332)
31 PRK01207 methionine synthase; 100.0 2E-43 4.3E-48 379.7 32.7 306 2-369 5-340 (343)
32 PF08267 Meth_synt_1: Cobalami 100.0 4.5E-43 9.8E-48 373.6 21.8 277 434-721 2-309 (310)
33 PF01717 Meth_synt_2: Cobalami 100.0 1.9E-41 4.1E-46 369.4 28.4 311 2-366 3-323 (324)
34 PRK00957 methionine synthase; 100.0 5.6E-40 1.2E-44 354.9 30.2 294 2-368 3-304 (305)
35 PRK06438 hypothetical protein; 100.0 8.6E-38 1.9E-42 324.2 24.5 279 1-364 2-290 (292)
36 PRK06438 hypothetical protein; 100.0 1.7E-37 3.6E-42 322.1 25.0 282 432-754 2-291 (292)
37 PRK06052 5-methyltetrahydropte 100.0 8.2E-33 1.8E-37 292.5 24.5 295 3-369 7-341 (344)
38 KOG2263 Methionine synthase II 100.0 1.4E-32 3.1E-37 292.9 25.6 294 434-739 3-335 (765)
39 cd00465 URO-D_CIMS_like The UR 99.9 9E-26 1.9E-30 244.1 19.1 267 467-755 28-305 (306)
40 cd00465 URO-D_CIMS_like The UR 99.8 1.9E-18 4.1E-23 187.0 16.5 220 108-336 61-292 (306)
41 cd03465 URO-D_like The URO-D _ 99.7 1.4E-16 3E-21 174.3 18.4 191 552-755 126-329 (330)
42 TIGR01463 mtaA_cmuA methyltran 99.7 1.3E-15 2.8E-20 167.5 17.3 202 540-757 124-338 (340)
43 PRK06252 methylcobalamin:coenz 99.7 1.7E-15 3.6E-20 166.6 18.1 202 540-758 124-337 (339)
44 cd03307 Mta_CmuA_like MtaA_Cmu 99.5 2.8E-13 6E-18 148.2 17.1 198 540-755 115-325 (326)
45 PRK00115 hemE uroporphyrinogen 99.4 2.9E-12 6.2E-17 141.4 19.2 202 540-757 124-344 (346)
46 PLN02433 uroporphyrinogen deca 99.4 1.3E-11 2.8E-16 136.1 20.4 203 540-759 117-339 (345)
47 cd00717 URO-D Uroporphyrinogen 99.4 1E-11 2.3E-16 136.3 18.8 267 459-755 35-334 (335)
48 TIGR01464 hemE uroporphyrinoge 99.4 1.2E-11 2.6E-16 136.1 19.1 199 540-755 118-337 (338)
49 PF01208 URO-D: Uroporphyrinog 99.4 8.7E-12 1.9E-16 137.3 15.5 271 458-756 40-342 (343)
50 cd03308 CmuA_CmuC_like CmuA_Cm 99.1 1.2E-09 2.6E-14 121.9 16.7 193 552-755 171-377 (378)
51 cd03309 CmuC_like CmuC_like. P 99.0 4.7E-09 1E-13 114.3 16.9 187 553-747 114-315 (321)
52 COG0407 HemE Uroporphyrinogen- 99.0 1.8E-08 3.8E-13 110.0 18.3 203 540-758 127-349 (352)
53 cd03465 URO-D_like The URO-D _ 98.9 1.4E-08 3E-13 111.3 15.8 171 149-331 126-313 (330)
54 TIGR01463 mtaA_cmuA methyltran 98.6 1E-06 2.2E-11 97.1 17.7 183 137-331 123-320 (340)
55 PRK06252 methylcobalamin:coenz 98.6 1.1E-06 2.5E-11 96.7 17.0 173 149-331 138-318 (339)
56 cd03307 Mta_CmuA_like MtaA_Cmu 98.2 2.6E-05 5.6E-10 85.6 15.7 184 138-331 115-309 (326)
57 PF01208 URO-D: Uroporphyrinog 98.1 5.3E-05 1.1E-09 83.6 16.1 176 149-337 137-328 (343)
58 PLN02433 uroporphyrinogen deca 98.1 0.00015 3.4E-09 80.1 18.1 170 149-331 131-319 (345)
59 TIGR01464 hemE uroporphyrinoge 97.9 0.0005 1.1E-08 75.8 18.1 185 137-331 117-321 (338)
60 PRK00115 hemE uroporphyrinogen 97.8 0.00086 1.9E-08 74.2 17.8 184 138-331 124-326 (346)
61 cd00717 URO-D Uroporphyrinogen 97.6 0.0013 2.7E-08 72.6 15.4 173 149-331 129-318 (335)
62 cd03309 CmuC_like CmuC_like. P 97.5 0.0015 3.3E-08 71.4 14.3 175 150-331 114-304 (321)
63 KOG2872 Uroporphyrinogen decar 97.4 0.0018 3.9E-08 67.6 12.7 190 552-758 145-357 (359)
64 cd03308 CmuA_CmuC_like CmuA_Cm 96.2 0.079 1.7E-06 59.5 14.5 174 149-331 171-359 (378)
65 COG0407 HemE Uroporphyrinogen- 96.2 0.22 4.7E-06 55.1 17.3 187 135-331 124-330 (352)
66 PRK08091 ribulose-phosphate 3- 91.1 1.6 3.5E-05 45.5 10.3 144 585-752 25-171 (228)
67 PF02581 TMP-TENI: Thiamine mo 90.1 6.1 0.00013 39.4 13.3 111 188-327 14-124 (180)
68 PRK08745 ribulose-phosphate 3- 90.0 2.8 6.1E-05 43.6 11.0 91 585-685 16-108 (223)
69 PRK08005 epimerase; Validated 89.2 2.8 6E-05 43.2 10.1 90 585-685 13-104 (210)
70 cd00739 DHPS DHPS subgroup of 88.6 25 0.00055 37.3 17.2 152 588-752 27-193 (257)
71 TIGR01496 DHPS dihydropteroate 87.9 36 0.00078 36.2 17.8 155 586-753 24-192 (257)
72 COG0036 Rpe Pentose-5-phosphat 86.8 6.3 0.00014 40.7 10.8 145 586-754 17-164 (220)
73 PLN02334 ribulose-phosphate 3- 86.7 9.8 0.00021 39.5 12.6 75 586-671 21-97 (229)
74 PRK08883 ribulose-phosphate 3- 84.6 8.2 0.00018 40.0 10.7 90 586-685 13-104 (220)
75 PRK03512 thiamine-phosphate py 83.6 7.8 0.00017 39.9 10.0 107 191-326 24-130 (211)
76 KOG3111 D-ribulose-5-phosphate 82.9 44 0.00095 33.9 14.2 102 586-699 18-121 (224)
77 PRK14057 epimerase; Provisiona 82.3 9.7 0.00021 40.3 10.1 87 586-685 33-121 (254)
78 PF00834 Ribul_P_3_epim: Ribul 82.3 9.1 0.0002 39.2 9.7 98 586-697 13-112 (201)
79 PRK08195 4-hyroxy-2-oxovalerat 80.9 79 0.0017 35.0 17.2 145 587-751 27-183 (337)
80 PF01729 QRPTase_C: Quinolinat 80.6 9.4 0.0002 38.0 8.9 64 191-267 92-155 (169)
81 cd00564 TMP_TenI Thiamine mono 80.6 27 0.00059 34.4 12.6 111 187-326 13-123 (196)
82 PRK11613 folP dihydropteroate 79.9 93 0.002 33.6 18.5 155 587-752 40-206 (282)
83 cd00423 Pterin_binding Pterin 79.3 90 0.002 33.0 18.4 154 586-751 25-192 (258)
84 PRK02615 thiamine-phosphate py 78.9 13 0.00027 41.4 10.1 110 188-326 159-268 (347)
85 PF00809 Pterin_bind: Pterin b 78.2 70 0.0015 32.8 14.8 153 591-753 25-191 (210)
86 PRK13753 dihydropteroate synth 77.6 1.1E+02 0.0024 33.0 17.6 150 588-753 28-197 (279)
87 PRK09722 allulose-6-phosphate 77.5 20 0.00044 37.4 10.6 88 586-685 16-106 (229)
88 COG0646 MetH Methionine syntha 75.5 22 0.00047 38.4 10.2 142 181-330 138-297 (311)
89 cd07944 DRE_TIM_HOA_like 4-hyd 75.0 1.2E+02 0.0026 32.3 17.7 149 588-752 23-178 (266)
90 PRK08999 hypothetical protein; 74.8 20 0.00043 39.0 10.3 107 190-326 148-254 (312)
91 cd00564 TMP_TenI Thiamine mono 73.7 38 0.00082 33.4 11.3 70 586-674 13-82 (196)
92 PRK06512 thiamine-phosphate py 73.6 47 0.001 34.5 12.1 109 190-326 30-139 (221)
93 PRK08195 4-hyroxy-2-oxovalerat 73.1 73 0.0016 35.3 14.2 135 190-336 29-174 (337)
94 TIGR03217 4OH_2_O_val_ald 4-hy 73.1 1.6E+02 0.0034 32.7 17.2 145 587-751 26-182 (333)
95 PTZ00170 D-ribulose-5-phosphat 72.2 53 0.0011 34.2 12.2 99 585-696 19-120 (228)
96 PRK07695 transcriptional regul 71.5 65 0.0014 32.6 12.5 105 190-326 19-123 (201)
97 PRK06256 biotin synthase; Vali 70.6 1.5E+02 0.0032 32.5 16.1 134 191-334 99-245 (336)
98 TIGR00693 thiE thiamine-phosph 70.1 36 0.00078 34.1 10.2 110 188-326 15-124 (196)
99 PLN02334 ribulose-phosphate 3- 70.0 89 0.0019 32.4 13.4 73 188-267 22-97 (229)
100 COG0352 ThiE Thiamine monophos 67.7 41 0.00088 34.7 10.0 105 190-318 25-129 (211)
101 PF09851 SHOCT: Short C-termin 65.7 14 0.0003 26.0 4.2 26 444-469 3-28 (31)
102 PRK00043 thiE thiamine-phospha 65.5 26 0.00057 35.4 8.2 68 188-269 23-90 (212)
103 COG3462 Predicted membrane pro 65.5 6.9 0.00015 35.5 3.3 29 14-42 88-116 (117)
104 PLN02898 HMP-P kinase/thiamin- 65.0 47 0.001 38.8 11.2 110 188-326 309-418 (502)
105 PRK05848 nicotinate-nucleotide 64.4 25 0.00054 37.7 8.0 67 190-269 193-259 (273)
106 PRK12290 thiE thiamine-phospha 64.4 39 0.00086 38.6 9.8 108 190-326 221-328 (437)
107 PF01729 QRPTase_C: Quinolinat 64.1 23 0.00049 35.3 7.1 63 590-671 92-155 (169)
108 COG3462 Predicted membrane pro 63.7 8.3 0.00018 35.0 3.4 25 446-470 91-115 (117)
109 TIGR03217 4OH_2_O_val_ald 4-hy 62.2 1.6E+02 0.0036 32.5 14.1 135 190-336 28-173 (333)
110 PRK13585 1-(5-phosphoribosyl)- 61.7 63 0.0014 33.6 10.4 126 190-326 36-170 (241)
111 PRK00043 thiE thiamine-phospha 61.3 47 0.001 33.5 9.2 67 587-672 23-89 (212)
112 PRK08508 biotin synthase; Prov 59.3 2E+02 0.0043 30.9 13.9 98 624-731 74-187 (279)
113 cd04724 Tryptophan_synthase_al 58.2 59 0.0013 34.1 9.4 77 187-266 15-110 (242)
114 cd00530 PTE Phosphotriesterase 58.0 1.2E+02 0.0027 32.2 12.2 94 641-737 149-249 (293)
115 COG0646 MetH Methionine syntha 57.9 2.8E+02 0.0061 30.2 14.2 229 460-735 44-297 (311)
116 PRK07428 nicotinate-nucleotide 57.0 37 0.0008 36.8 7.7 66 190-268 207-272 (288)
117 KOG2872 Uroporphyrinogen decar 56.8 1.2E+02 0.0026 32.8 11.0 162 178-361 185-356 (359)
118 PF06187 DUF993: Protein of un 55.8 25 0.00055 38.4 6.1 108 179-291 125-250 (382)
119 PRK01060 endonuclease IV; Prov 54.5 73 0.0016 33.8 9.6 30 642-671 2-32 (281)
120 PRK10508 hypothetical protein; 53.5 22 0.00047 39.4 5.4 48 705-756 285-332 (333)
121 cd07939 DRE_TIM_NifV Streptomy 53.5 2.9E+02 0.0064 29.1 17.3 138 588-751 23-178 (259)
122 PRK07896 nicotinate-nucleotide 53.4 46 0.00099 36.1 7.7 66 191-269 211-276 (289)
123 cd00530 PTE Phosphotriesterase 52.1 3.2E+02 0.0069 29.0 14.7 144 182-332 97-249 (293)
124 TIGR01334 modD putative molybd 52.0 52 0.0011 35.5 7.8 66 190-268 199-264 (277)
125 PF02581 TMP-TENI: Thiamine mo 51.2 1E+02 0.0023 30.5 9.5 109 588-732 15-124 (180)
126 PF09851 SHOCT: Short C-termin 51.1 32 0.0007 24.1 4.1 27 15-41 3-29 (31)
127 COG5016 Pyruvate/oxaloacetate 50.9 1.9E+02 0.0041 32.8 11.9 74 585-671 156-231 (472)
128 TIGR02660 nifV_homocitr homoci 50.5 2.6E+02 0.0056 31.2 13.5 136 590-751 28-181 (365)
129 TIGR01163 rpe ribulose-phospha 50.4 2.7E+02 0.0058 27.9 12.6 73 586-671 12-86 (210)
130 PRK07896 nicotinate-nucleotide 50.4 62 0.0013 35.1 8.1 59 594-671 215-274 (289)
131 PRK15108 biotin synthase; Prov 50.0 2.2E+02 0.0048 31.6 12.7 112 191-315 84-211 (345)
132 cd07948 DRE_TIM_HCS Saccharomy 49.1 3.6E+02 0.0077 28.7 14.3 137 589-751 26-180 (262)
133 cd03174 DRE_TIM_metallolyase D 48.7 3.3E+02 0.0072 28.3 16.9 147 588-752 22-186 (265)
134 TIGR02090 LEU1_arch isopropylm 48.0 2.8E+02 0.006 31.0 13.2 129 190-335 26-170 (363)
135 PF00682 HMGL-like: HMGL-like 47.6 2.1E+02 0.0045 29.5 11.5 138 588-750 17-175 (237)
136 cd07943 DRE_TIM_HOA 4-hydroxy- 47.4 3.7E+02 0.008 28.4 14.0 135 190-336 26-171 (263)
137 TIGR00262 trpA tryptophan synt 47.3 3.7E+02 0.0081 28.5 15.2 29 642-671 88-122 (256)
138 PRK05848 nicotinate-nucleotide 46.8 69 0.0015 34.4 7.8 62 591-671 195-257 (273)
139 PRK06096 molybdenum transport 46.8 68 0.0015 34.7 7.7 67 190-269 200-266 (284)
140 PRK06559 nicotinate-nucleotide 46.1 42 0.00091 36.3 6.0 59 591-671 210-269 (290)
141 TIGR02082 metH 5-methyltetrahy 45.8 5.6E+02 0.012 33.5 16.7 152 580-752 143-313 (1178)
142 PRK10812 putative DNAse; Provi 45.5 4E+02 0.0087 28.3 15.6 143 218-386 109-255 (265)
143 PRK09517 multifunctional thiam 44.9 2.1E+02 0.0045 35.4 12.5 111 190-326 23-136 (755)
144 PRK08385 nicotinate-nucleotide 44.8 96 0.0021 33.4 8.5 67 190-269 193-261 (278)
145 TIGR02082 metH 5-methyltetrahy 44.2 2.2E+02 0.0048 37.0 12.8 126 181-313 143-285 (1178)
146 cd00958 DhnA Class I fructose- 43.9 3.8E+02 0.0083 27.6 13.5 139 590-749 81-232 (235)
147 PRK06978 nicotinate-nucleotide 43.8 48 0.001 35.9 6.0 57 593-671 220-277 (294)
148 cd04735 OYE_like_4_FMN Old yel 42.6 2.4E+02 0.0052 31.4 11.6 92 580-671 139-255 (353)
149 cd04724 Tryptophan_synthase_al 42.3 4.2E+02 0.0092 27.7 15.9 82 586-671 15-111 (242)
150 PRK10812 putative DNAse; Provi 42.2 4.5E+02 0.0098 27.9 15.7 97 624-737 110-210 (265)
151 cd07943 DRE_TIM_HOA 4-hydroxy- 41.8 4.4E+02 0.0096 27.8 15.9 142 588-749 25-178 (263)
152 PRK05581 ribulose-phosphate 3- 41.2 64 0.0014 32.9 6.4 70 188-267 18-93 (220)
153 COG1099 Predicted metal-depend 41.1 3.8E+02 0.0082 28.1 11.5 86 641-739 127-218 (254)
154 PRK06512 thiamine-phosphate py 41.1 2.3E+02 0.0051 29.3 10.5 64 589-671 30-94 (221)
155 COG0352 ThiE Thiamine monophos 41.1 1.3E+02 0.0029 31.0 8.6 65 589-672 25-89 (211)
156 PRK09490 metH B12-dependent me 40.9 2E+02 0.0043 37.6 11.6 126 181-313 159-301 (1229)
157 COG1839 Uncharacterized conser 40.2 1.5E+02 0.0033 28.5 7.9 114 598-723 42-159 (162)
158 PLN02389 biotin synthase 39.7 5.1E+02 0.011 29.2 13.6 133 590-739 124-278 (379)
159 cd07942 DRE_TIM_LeuA Mycobacte 39.6 1.4E+02 0.0031 32.2 8.9 98 590-722 28-129 (284)
160 cd07948 DRE_TIM_HCS Saccharomy 39.5 5E+02 0.011 27.6 15.3 126 190-331 26-167 (262)
161 TIGR02660 nifV_homocitr homoci 39.3 5.9E+02 0.013 28.4 15.4 130 190-336 27-172 (365)
162 PF05120 GvpG: Gas vesicle pro 38.7 87 0.0019 27.2 5.6 36 444-479 35-70 (79)
163 cd00429 RPE Ribulose-5-phospha 38.4 1.4E+02 0.0029 30.0 8.2 74 587-671 14-87 (211)
164 PRK02083 imidazole glycerol ph 38.3 4.2E+02 0.0092 27.7 12.2 126 192-326 36-174 (253)
165 COG0084 TatD Mg-dependent DNas 37.4 3.5E+02 0.0076 28.8 11.2 106 237-362 127-235 (256)
166 TIGR00284 dihydropteroate synt 37.4 7.5E+02 0.016 29.1 16.6 126 585-735 165-291 (499)
167 TIGR02321 Pphn_pyruv_hyd phosp 37.3 5.2E+02 0.011 28.1 12.7 76 594-673 31-112 (290)
168 PRK09016 quinolinate phosphori 37.3 80 0.0017 34.3 6.5 59 591-671 221-280 (296)
169 cd07944 DRE_TIM_HOA_like 4-hyd 37.3 5.4E+02 0.012 27.4 16.0 136 190-336 24-168 (266)
170 COG4586 ABC-type uncharacteriz 37.1 1.1E+02 0.0024 33.0 7.3 81 199-292 174-258 (325)
171 PRK09490 metH B12-dependent me 36.9 9E+02 0.02 31.8 16.5 154 580-752 159-329 (1229)
172 PRK06543 nicotinate-nucleotide 36.6 79 0.0017 34.1 6.3 57 593-671 208-265 (281)
173 PF05120 GvpG: Gas vesicle pro 36.4 86 0.0019 27.2 5.2 36 14-49 34-69 (79)
174 PRK14847 hypothetical protein; 36.0 4.3E+02 0.0093 29.3 11.9 141 592-752 61-233 (333)
175 PLN02716 nicotinate-nucleotide 36.0 1.3E+02 0.0027 33.0 7.7 73 190-269 214-292 (308)
176 PRK08385 nicotinate-nucleotide 35.9 1.5E+02 0.0033 31.9 8.3 64 591-671 195-259 (278)
177 PF07745 Glyco_hydro_53: Glyco 35.9 6.5E+02 0.014 27.9 17.8 154 575-757 100-283 (332)
178 COG0157 NadC Nicotinate-nucleo 35.3 82 0.0018 33.8 6.0 59 593-671 203-262 (280)
179 PRK07428 nicotinate-nucleotide 35.0 1.6E+02 0.0035 31.9 8.4 59 594-671 212-271 (288)
180 PRK08508 biotin synthase; Prov 34.6 6E+02 0.013 27.2 16.9 132 193-335 50-196 (279)
181 cd04731 HisF The cyclase subun 34.6 5.1E+02 0.011 26.8 12.0 126 191-326 32-170 (243)
182 PRK12928 lipoyl synthase; Prov 34.1 6.3E+02 0.014 27.3 15.7 140 190-336 94-252 (290)
183 PRK08645 bifunctional homocyst 33.6 3.2E+02 0.0069 32.9 11.5 136 182-331 121-274 (612)
184 cd00405 PRAI Phosphoribosylant 33.3 1.3E+02 0.0027 30.5 7.0 95 191-293 11-106 (203)
185 PRK06106 nicotinate-nucleotide 33.1 1.1E+02 0.0023 33.2 6.6 56 594-671 210-266 (281)
186 PRK07535 methyltetrahydrofolat 32.8 6.3E+02 0.014 26.9 16.5 148 586-754 26-184 (261)
187 PRK09016 quinolinate phosphori 32.7 1.4E+02 0.0029 32.6 7.3 64 190-269 219-282 (296)
188 TIGR01859 fruc_bis_ald_ fructo 32.7 6.6E+02 0.014 27.1 16.0 80 587-676 29-109 (282)
189 TIGR01334 modD putative molybd 32.7 1.6E+02 0.0034 31.8 7.8 63 590-671 200-263 (277)
190 PRK05581 ribulose-phosphate 3- 32.4 2.7E+02 0.006 28.1 9.4 21 586-606 17-37 (220)
191 cd00958 DhnA Class I fructose- 32.3 2.1E+02 0.0045 29.5 8.6 124 191-327 81-216 (235)
192 PRK06096 molybdenum transport 32.0 93 0.002 33.6 5.9 60 593-671 204-264 (284)
193 TIGR02090 LEU1_arch isopropylm 32.0 7.6E+02 0.016 27.6 15.8 138 589-752 26-181 (363)
194 PRK06256 biotin synthase; Vali 32.0 7E+02 0.015 27.2 16.2 125 587-730 96-236 (336)
195 PF00834 Ribul_P_3_epim: Ribul 31.9 3.8E+02 0.0083 27.4 10.1 143 188-367 14-162 (201)
196 PF00682 HMGL-like: HMGL-like 31.6 3.3E+02 0.0072 28.0 10.0 146 190-360 18-181 (237)
197 KOG3338 Divalent cation tolera 31.5 33 0.00072 32.3 2.1 89 36-144 56-144 (153)
198 PRK06978 nicotinate-nucleotide 31.4 1.8E+02 0.0038 31.7 7.9 64 190-269 216-279 (294)
199 PRK15124 2'-5' RNA ligase; Pro 31.2 2.8E+02 0.0061 27.4 8.9 95 211-318 10-114 (176)
200 PRK06543 nicotinate-nucleotide 31.1 1.8E+02 0.0039 31.4 7.9 64 190-269 204-267 (281)
201 cd02803 OYE_like_FMN_family Ol 30.8 5.4E+02 0.012 27.9 12.0 92 580-671 136-248 (327)
202 cd04735 OYE_like_4_FMN Old yel 30.6 5.9E+02 0.013 28.3 12.2 32 457-489 133-165 (353)
203 PRK11858 aksA trans-homoaconit 30.1 8.3E+02 0.018 27.4 17.3 138 589-752 30-185 (378)
204 KOG1579 Homocysteine S-methylt 29.9 4.9E+02 0.011 28.6 10.8 81 655-740 152-237 (317)
205 PRK11449 putative deoxyribonuc 29.9 6.9E+02 0.015 26.4 13.4 98 624-737 113-212 (258)
206 COG0648 Nfo Endonuclease IV [D 29.7 3.4E+02 0.0074 29.3 9.6 88 179-270 80-178 (280)
207 TIGR00078 nadC nicotinate-nucl 29.7 1.9E+02 0.0041 30.9 7.8 62 190-267 189-250 (265)
208 PRK03512 thiamine-phosphate py 29.3 2.3E+02 0.0049 29.2 8.1 62 591-671 25-86 (211)
209 cd03174 DRE_TIM_metallolyase D 29.2 6.6E+02 0.014 26.0 13.7 149 190-360 23-190 (265)
210 TIGR00735 hisF imidazoleglycer 28.8 6.5E+02 0.014 26.4 11.7 126 192-326 36-176 (254)
211 TIGR00695 uxuA mannonate dehyd 28.5 8.6E+02 0.019 27.7 12.9 74 572-654 201-276 (394)
212 PLN02389 biotin synthase 28.5 8.9E+02 0.019 27.3 16.5 115 191-314 124-252 (379)
213 PRK05742 nicotinate-nucleotide 28.1 1.8E+02 0.004 31.3 7.3 63 191-269 201-263 (277)
214 TIGR00510 lipA lipoate synthas 27.9 5.9E+02 0.013 27.8 11.3 127 587-731 96-243 (302)
215 PRK11858 aksA trans-homoaconit 27.4 9.2E+02 0.02 27.1 15.0 130 190-336 30-175 (378)
216 cd01096 Alkanal_monooxygenase 27.3 1E+02 0.0022 33.5 5.4 41 705-748 273-313 (315)
217 cd07937 DRE_TIM_PC_TC_5S Pyruv 27.1 7.9E+02 0.017 26.2 16.8 147 590-752 26-189 (275)
218 cd02932 OYE_YqiM_FMN Old yello 26.9 6E+02 0.013 27.9 11.5 96 574-670 144-260 (336)
219 PTZ00372 endonuclease 4-like p 26.7 4.8E+02 0.01 29.8 10.7 95 137-241 177-274 (413)
220 PF01026 TatD_DNase: TatD rela 26.7 5.7E+02 0.012 26.7 10.9 103 619-736 105-209 (255)
221 cd07937 DRE_TIM_PC_TC_5S Pyruv 26.6 8E+02 0.017 26.1 13.0 136 191-336 26-179 (275)
222 cd04733 OYE_like_2_FMN Old yel 26.4 7.5E+02 0.016 27.1 12.1 93 578-670 142-255 (338)
223 PRK06106 nicotinate-nucleotide 26.3 2.3E+02 0.0049 30.7 7.6 63 191-269 206-268 (281)
224 COG0157 NadC Nicotinate-nucleo 26.1 2.3E+02 0.0049 30.5 7.4 67 190-270 199-265 (280)
225 cd02930 DCR_FMN 2,4-dienoyl-Co 26.0 7.2E+02 0.016 27.5 12.0 95 575-670 128-243 (353)
226 cd01568 QPRTase_NadC Quinolina 25.9 2.4E+02 0.0052 30.2 7.8 59 194-266 196-254 (269)
227 PF00036 EF-hand_1: EF hand; 25.8 54 0.0012 22.5 1.9 25 16-40 1-28 (29)
228 PRK11449 putative deoxyribonuc 25.6 7.8E+02 0.017 26.0 11.6 82 236-331 128-211 (258)
229 TIGR01212 radical SAM protein, 25.2 8.9E+02 0.019 26.2 12.4 114 589-727 127-256 (302)
230 cd00429 RPE Ribulose-5-phospha 25.2 2.3E+02 0.005 28.3 7.3 71 188-266 14-86 (211)
231 TIGR03558 oxido_grp_1 lucifera 25.0 1E+02 0.0023 33.6 5.0 45 704-752 278-322 (323)
232 PRK00915 2-isopropylmalate syn 24.9 1.2E+03 0.025 27.5 15.9 139 590-752 31-189 (513)
233 PTZ00170 D-ribulose-5-phosphat 24.8 7.2E+02 0.016 25.7 11.0 75 187-270 20-98 (228)
234 PRK06559 nicotinate-nucleotide 24.3 2.5E+02 0.0055 30.4 7.6 64 190-269 208-271 (290)
235 PRK07709 fructose-bisphosphate 23.8 9.5E+02 0.021 26.0 14.3 135 587-738 31-182 (285)
236 cd00377 ICL_PEPM Members of th 23.7 8.6E+02 0.019 25.5 13.2 74 594-673 25-106 (243)
237 COG0084 TatD Mg-dependent DNas 23.7 9E+02 0.02 25.7 15.1 83 642-737 126-210 (256)
238 PRK08005 epimerase; Validated 23.6 8.2E+02 0.018 25.2 13.7 73 187-269 14-90 (210)
239 TIGR02319 CPEP_Pphonmut carbox 23.5 9.8E+02 0.021 26.0 17.4 147 588-759 95-253 (294)
240 PLN02716 nicotinate-nucleotide 23.4 1.7E+02 0.0036 32.1 6.0 62 597-671 228-290 (308)
241 cd01572 QPRTase Quinolinate ph 23.4 3E+02 0.0064 29.5 7.9 64 190-269 193-256 (268)
242 smart00518 AP2Ec AP endonuclea 23.3 8E+02 0.017 25.6 11.3 93 138-242 47-140 (273)
243 PRK12928 lipoyl synthase; Prov 23.3 8.8E+02 0.019 26.2 11.6 147 589-750 94-266 (290)
244 COG1099 Predicted metal-depend 23.2 8.9E+02 0.019 25.5 12.4 116 202-332 97-216 (254)
245 PRK02615 thiamine-phosphate py 23.1 4.7E+02 0.01 29.2 9.6 63 590-671 162-224 (347)
246 PRK12290 thiE thiamine-phospha 23.0 6E+02 0.013 29.3 10.5 62 591-671 223-284 (437)
247 PRK09240 thiH thiamine biosynt 22.9 1.1E+03 0.024 26.4 14.1 73 587-672 109-183 (371)
248 PRK12331 oxaloacetate decarbox 22.5 4E+02 0.0087 30.8 9.2 72 587-671 156-229 (448)
249 TIGR00970 leuA_yeast 2-isoprop 22.2 3.4E+02 0.0075 32.3 8.8 74 590-677 53-130 (564)
250 cd02685 MIT_C MIT_C; domain fo 21.9 7.3E+02 0.016 24.2 9.4 56 188-246 7-63 (148)
251 cd00951 KDGDH 5-dehydro-4-deox 21.4 9.2E+02 0.02 25.8 11.4 78 585-671 21-101 (289)
252 PF06187 DUF993: Protein of un 21.2 2.2E+02 0.0047 31.5 6.2 84 578-671 125-227 (382)
253 PLN03228 methylthioalkylmalate 21.2 1.1E+03 0.024 27.8 12.5 53 693-751 226-278 (503)
254 PRK05742 nicotinate-nucleotide 21.2 2E+02 0.0044 30.9 6.1 57 593-671 204-261 (277)
255 cd07939 DRE_TIM_NifV Streptomy 21.0 9.7E+02 0.021 25.1 16.2 142 190-358 24-181 (259)
256 cd08210 RLP_RrRLP Ribulose bis 20.8 1.2E+03 0.026 26.1 16.7 142 586-736 142-291 (364)
257 PRK14041 oxaloacetate decarbox 20.7 4.7E+02 0.01 30.4 9.3 72 586-670 154-227 (467)
258 TIGR00693 thiE thiamine-phosph 20.6 5.4E+02 0.012 25.5 8.9 64 589-671 17-80 (196)
259 cd01573 modD_like ModD; Quinol 20.6 3.7E+02 0.008 28.8 8.0 62 193-267 197-258 (272)
260 PRK00915 2-isopropylmalate syn 20.5 1.1E+03 0.023 27.8 12.4 132 190-336 30-179 (513)
261 PRK12330 oxaloacetate decarbox 20.5 4.5E+02 0.0098 30.8 9.1 72 586-670 156-231 (499)
262 PRK07695 transcriptional regul 20.4 8.7E+02 0.019 24.3 11.7 59 594-672 23-81 (201)
263 cd07940 DRE_TIM_IPMS 2-isoprop 20.3 9.5E+02 0.021 25.3 11.1 144 189-358 23-185 (268)
264 COG0648 Nfo Endonuclease IV [D 20.2 1.1E+03 0.024 25.4 12.9 108 553-674 61-178 (280)
No 1
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-212 Score=1660.46 Aligned_cols=763 Identities=86% Similarity=1.291 Sum_probs=742.2
Q ss_pred CceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 004263 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (765)
Q Consensus 1 ~~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~ 80 (765)
|.+|++||||||++||||+|+|+||.|++|.++|.++++++|.++|+.|+++|+|+||+|+||+||+|||++.|||+||+
T Consensus 2 ~~S~i~G~PRiGp~RELK~A~E~~W~GKts~ddL~~va~~LR~~~WK~~k~aGv~~IPSN~FS~YDQvlD~t~~~~~vP~ 81 (765)
T KOG2263|consen 2 MASHIVGYPRIGPKRELKFALESFWDGKTSADDLQKVAADLRSSIWKLMKAAGVKIIPSNTFSHYDQVLDTTAMLGAVPP 81 (765)
T ss_pred cccccccCCCcCccHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchhHHHHHHhHHHHhcCCCc
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHcCCCCceEeehHHH
Q 004263 81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVS 160 (765)
Q Consensus 81 rf~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T 160 (765)
||++..+.+++|+||+|+||..+++|+||+||||+||||++||+...+.|++.+++.++||++||++|+.++|||+||+|
T Consensus 82 RYg~~sg~~~lD~yFsM~RG~~~v~A~EM~KWFDsNyHyi~Pe~~~e~~F~~~s~KavdEf~EAK~lGi~T~PVLvGPvs 161 (765)
T KOG2263|consen 82 RYGRTSGEIGLDVYFSMARGNASVPAMEMTKWFDSNYHYIVPELGPEVNFSYASHKAVDEFKEAKALGIDTVPVLVGPVS 161 (765)
T ss_pred ccccccCccchhhhhhhhcCCCCcchHHHhhhhccCceeeccccCCccceeeccchhHHHHHHHHhcCCcccceeecchh
Confidence 99877778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEE
Q 004263 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240 (765)
Q Consensus 161 ~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l 240 (765)
||+|+|..++-..++++.+|+++|+|+|.++|.+|.++|++|||||||+|++|++.+-+++|..+|..+......++++|
T Consensus 162 YL~l~K~aKg~~ks~~~lsLl~kiLPvY~Evi~kL~sAGA~~iQiDEPilvmDL~~~~l~a~k~AY~~l~~~~~~~~v~l 241 (765)
T KOG2263|consen 162 YLLLSKAAKGVDKSFELLSLLPKILPVYKEVIAKLKSAGATWIQIDEPILVMDLPGEKLQAFKGAYAELESTLSGLNVLL 241 (765)
T ss_pred hhheeccccCcccccchHHHHHHHhHHHHHHHHHHHhcCCeEEEcCCceEEeeCcHHHHHHHHHHHHHHHhhccccceee
Confidence 99999876553225789999999999999999999999999999999999999999999999999999976554579999
Q ss_pred EeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCC
Q 004263 241 ETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKD 320 (765)
Q Consensus 241 ~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~ 320 (765)
+||||+++.+.++.|..||.|.++|+|+++++++++.++..||.+|.|++|||||||||.+|+......|+++...+|.+
T Consensus 242 ~TYF~~v~~~a~~~lk~L~~v~~~~~D~VR~~e~lD~~~a~~~~~k~l~~GvVdGRNIW~nDf~~s~a~l~k~~~~vG~d 321 (765)
T KOG2263|consen 242 ATYFADVPAEAYKTLKSLKGVTAFGFDLVRGPETLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLATLQKLEGIVGKD 321 (765)
T ss_pred hhhhccCCHHHHHHHhCCcceeeeeeeeeechhhHHHHHhcCCCCceEEEEEeccchhhhhhHHHHHHHHHHHHHhhccc
Confidence 99999996666999999998999999999999999999888999999999999999999999999999999999999999
Q ss_pred cEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHhhhcCCCCCCHHHHh
Q 004263 321 KVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQK 400 (765)
Q Consensus 321 ~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 400 (765)
+|.|++||||+|+|+|+.+|++||+|||+|||||.|||.|++.|++++++..+.+.+.+|..+.++|+.|++++|++||+
T Consensus 322 kvvVstS~SlLHt~vdL~nE~kld~EiK~w~aFA~qK~~Ev~~l~Ka~sg~~~~a~~eaNa~~~~sR~~Sp~v~~~aV~~ 401 (765)
T KOG2263|consen 322 KVVVSTSCSLLHTAVDLINETKLDAEIKSWLAFAAQKVVEVNALAKALSGQKVEALFEANAAALASRRSSPRVTNEAVQK 401 (765)
T ss_pred eEEEeechhhhccchhhccccccCHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHhcchHHHhhccCCCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999998777888999999999999999999999999
Q ss_pred HHhhCcCCCCcCCCChHHHHHHHHhhcCCCCccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004263 401 PAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEE 480 (765)
Q Consensus 401 ~~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~ 480 (765)
|++++++.|.+|.+||+.|..+||++||||.||||||||||||.+||..|..|.+|+||+++|.++|+++|+.+|+.||+
T Consensus 402 r~a~v~~~~h~R~t~~~~Rl~~QQk~lnLPl~PTTTIGSFPQTkelR~~R~~f~~~~IS~edY~k~I~~Ei~kVvkfQEe 481 (765)
T KOG2263|consen 402 RVAAVKGSDHRRATPVSARLDAQQKKLNLPLLPTTTIGSFPQTKELRRVRREFKAKKISEEDYVKFIKEEIEKVVKFQEE 481 (765)
T ss_pred HHHhcCcccccccCchhhhhHHHHhhcCCCccccccccCCcchHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCCCCccchhHHHHHhccCCeEEeccceeeecCCceeeCcEEEccCCCCcccchhHHHHHHhccCCCceEeeec
Q 004263 481 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTG 560 (765)
Q Consensus 481 ~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~~~g~~~~~~t~~~~~P~i~g~i~~~~p~~~~~~~~a~~~t~~~vK~~ltG 560 (765)
+||||++|||.+|||||+||+|+|+||.||.||||||||+|||+||+|+||++||+|||+.|..|||+.|.+||||||||
T Consensus 482 lgiDVLVHGEpERNDMVeyFGEql~GfaFTvNGWVQSYGSRcVkPPiI~GDvsRPk~MtV~~S~~AQs~TsrPmKGMLTg 561 (765)
T KOG2263|consen 482 LGIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSYAQSMTSRPMKGMLTG 561 (765)
T ss_pred hCccEEecCCcccccHHHHHHhhccceEEEecchhHhhcCcccCCCeeeccccCCCcceeeHHHHHHHHhcCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCC
Q 004263 561 PVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQD 640 (765)
Q Consensus 561 PvTll~~s~~~~~~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~ 640 (765)
|+|++.|||+|+|.++.+.|.|||.++++|+.+|+++|+.+||+|||+||++||+|+.++..|++|++++||.+++++.+
T Consensus 562 PvTiL~WSF~R~D~~~~~~~~QiALaikDEV~DLEkaGikVIQiDE~ALREGLPLR~aE~~~Yl~WAv~aFRi~~sgVqd 641 (765)
T KOG2263|consen 562 PVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGIKVIQIDEAALREGLPLRKAEHSFYLDWAVHAFRITNSGVQD 641 (765)
T ss_pred ceEEEEeccccCCcchhHHHHHHHHHHHHHHHHHHHcCceEEEeChHHHhcCCCcchhhHHHHHHHHHHHhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHh
Q 004263 641 TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLA 720 (765)
Q Consensus 641 ~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~ 720 (765)
++|||+||||+||++|+..|.+|++|+|+||.+|+++++|..|.++..|+..||+||+|+|||++|+.+|+++||.+.++
T Consensus 642 ~TQIHtH~CYSdfndi~~~I~~mDADVitIEnSrsD~kllsvf~~gvkY~~~IGpG~~DIHSPRiPs~dE~~erI~~~l~ 721 (765)
T KOG2263|consen 642 STQIHTHMCYSDFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTDEIAERINKMLA 721 (765)
T ss_pred cchhhhhhhhhhccHHHHHHHhccCcEEEEecCcchHHHHHHHhccCcccCCcCCceecccCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998766789999999999999999999999999999999
Q ss_pred hcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 004263 721 VLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLAS 763 (765)
Q Consensus 721 ~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r~~~~~ 763 (765)
.+|.+.+||||||||+||.|+|+..+|+|||+||+.+|++|+.
T Consensus 722 ~~~~~~lWvNPDCGLKTR~~~E~~~~L~~Mv~AAk~~R~Q~~~ 764 (765)
T KOG2263|consen 722 VLPQNILWVNPDCGLKTRGYTEVKPALKNMVAAAKLIRSQLAS 764 (765)
T ss_pred hcccccEEECCCcCcccCCCccccHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999875
No 2
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=100.00 E-value=2.2e-194 Score=1693.39 Aligned_cols=762 Identities=90% Similarity=1.347 Sum_probs=726.5
Q ss_pred CceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 004263 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (765)
Q Consensus 1 ~~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~ 80 (765)
|+||++||||||++||||+|+|+||+|++|+++|+++++++++++|+.|+++|||+||||||||||||||+++|||.||+
T Consensus 1 ~~~~~lGyPRig~~ReLKka~e~yw~G~is~eeL~~~~~~~~~~~~~~Q~~aGld~ItdGdfsryD~vLD~~~m~g~ip~ 80 (766)
T PLN02475 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVAADLRSSIWKQMSAAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (766)
T ss_pred CCccccCCCCCCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccCCcchhHHHHhHHHHhccchh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHcCCCCceEeehHHH
Q 004263 81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVS 160 (765)
Q Consensus 81 rf~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T 160 (765)
||+...+..++++||+||||..++++++|||||||||||+|||+.+++.|++..++++++|++|+++|+.+||||+||+|
T Consensus 81 r~~~~~g~~~l~~yfamaRG~~~~~a~emtKwFdtNYHY~VPe~~~~~~f~~~~~~~l~e~~eA~~~g~~~kpVl~GP~T 160 (766)
T PLN02475 81 RYGWTGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVKFSYASHKAVNEYKEAKALGVDTVPVLVGPVS 160 (766)
T ss_pred hhhccCCcchHHHHHHHhcCCcccccccceEEecCCcceECcEECCCCccccCccchHHHHHHHHHcCCCCCcEEECHHH
Confidence 99754333569999999999646779999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCC-CcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEE
Q 004263 161 YLLLSKPAK-GVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVL 239 (765)
Q Consensus 161 ~l~l~~~~~-~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~ 239 (765)
|++||++.. +|. ++++.+++++|+++|++++++|.++||+|||||||+|++|++.+|++++.++|+.+.++++.++++
T Consensus 161 ~l~Lsk~~~~~~~-~~~~~~ll~~L~~~y~~~l~~L~~~Gv~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~ 239 (766)
T PLN02475 161 YLLLSKPAKGVDK-SFDLLSLLDKILPVYKEVIAELKAAGASWIQFDEPALVMDLESHKLQAFKTAYAELESTLSGLNVL 239 (766)
T ss_pred HHHHhcccccccC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhcCCCHHHHHHHHHHHHHHHhccCCCeEE
Confidence 999999643 343 367999999999999999999999999999999999999999899999999999998776557999
Q ss_pred EEeccCCCch-hhHHHHhcCCCccEEEEEeccCCCChhhHhh-hCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhc
Q 004263 240 IETYFADVPA-ETYKILTSLKGVTGFGFDLIRGTKTLDLIKT-EFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTV 317 (765)
Q Consensus 240 l~tyfg~~~~-~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~-~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~ 317 (765)
|+||||++ + ++++.+.++|+||||||||++++++|+.+.. .+|++|.|++|||||||+|++|+++++++|+++.+.+
T Consensus 240 l~TyFg~~-~~~~~~~l~~lp~Vd~l~lD~v~~~~~L~~l~~~~~p~~k~L~~GVVDgRNiw~~dl~~~~~~i~~~~~~~ 318 (766)
T PLN02475 240 VETYFADV-PAEAYKTLTSLKGVTAFGFDLVRGTKTLDLIKKAGFPSGKYLFAGVVDGRNIWANDLAASLATLQALEGIV 318 (766)
T ss_pred EEccCCCC-CHHHHHHHHcCCCCCEEEEEecCChhhHHHHHhccCCCCCeEEEEEEeCCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999 8 6999999998899999999998889999855 4788999999999999999999999999999999988
Q ss_pred CCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHhhhcCCCCCCHH
Q 004263 318 GKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEA 397 (765)
Q Consensus 318 ~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (765)
|+++|||+|||||+|+|++++.|++||+++|+|||||+|||+||++|++++++......+.+|.+++++|+.|++++|++
T Consensus 319 ~~~~l~v~psCsLlhvP~~~~~e~~l~~~~~~~~afa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (766)
T PLN02475 319 GKDKLVVSTSCSLLHTAVDLVNETKLDKELKSWLAFAAQKVVEVVALAKALAGQKDEAFFSANAAAQASRRSSPRVTNEA 398 (766)
T ss_pred CCCcEEEeCCCCCccCCccccccccCCHHHHhhhhhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhcCCccCCHH
Confidence 88999999999999999999999999999999999999999999999999976322566899999999999999999999
Q ss_pred HHhHHhhCcCCCCcCCCChHHHHHHHHhhcCCCCccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 004263 398 VQKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKL 477 (765)
Q Consensus 398 v~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~ 477 (765)
||+|+++|+++|++|++||++|++.||++|+||+||||||||||||++|+++|++|++|+||.++|+++++++|+++|+.
T Consensus 399 v~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~lptT~IGSfPrp~~lr~ar~~~~~G~i~~e~~~~~~~~aI~~~V~~ 478 (766)
T PLN02475 399 VQKAAAALKGSDHRRATPVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKISEEDYVKAIKEEIAKVVKL 478 (766)
T ss_pred HHHHHHhCChhhcccCCcHHHHHHHHHHHhCCCCCCCccccCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcccCCCCccchhHHHHHhccCCeEEeccceeeecCCceeeCcEEEccCCCCcccchhHHHHHHhccCCCceEe
Q 004263 478 QEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGM 557 (765)
Q Consensus 478 Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~~~g~~~~~~t~~~~~P~i~g~i~~~~p~~~~~~~~a~~~t~~~vK~~ 557 (765)
|+++||||||||||+|+|||+||+++|+||.++.+||+||||++||+||+|+|||++++||+++|++|+|++|++|+|+|
T Consensus 479 Qe~~GlDvltdGE~~R~dmv~~F~e~L~Gf~~~~~g~v~~~g~~~~r~p~i~G~I~~~~~~~v~~~~~aq~~t~~~vK~~ 558 (766)
T PLN02475 479 QEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSVAQSMTKRPMKGM 558 (766)
T ss_pred HHHcCCCeeecCceeccchHHHHHHhCCCeeecCCceEEeeCCcCCCCCeEeccccCCCCCCHHHHHHHHhccCCccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eechhHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHcc
Q 004263 558 LTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCG 637 (765)
Q Consensus 558 ltGPvTll~~s~~~~~~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~ 637 (765)
||||+||+.|||+++|.++++++.|||.+|++|+++|+++||++||||||+|++++|+++.++++|++|++++||.+.++
T Consensus 559 ltGP~Ti~~~s~~r~~~~~~e~~~~iA~alr~Ev~~L~~aG~~~IQIDEPal~e~~~~~~~~~~~~l~~av~af~~~~~~ 638 (766)
T PLN02475 559 LTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCG 638 (766)
T ss_pred EecHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcchhhcCCcCccCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred CCCCceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHH
Q 004263 638 VQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINK 717 (765)
Q Consensus 638 v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~ 717 (765)
+++++|||+|||||||+++++.|.++++|+|++|++|++++.|+.|++..++++.||+||||+||+++|++|+|+++|++
T Consensus 639 v~~~~~I~~H~C~gnf~~I~~~i~~l~~D~~~~E~~rs~~~~l~~l~~~~~~~~~IglGViD~~s~~ves~Eei~~rI~~ 718 (766)
T PLN02475 639 VQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINK 718 (766)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHhCCCCEEEEEcCCCChhhhHHHHhhcCCCCeEEEEEEcCCCCCCCCHHHHHHHHHH
Confidence 98899999999999999999999999999999999999887788884313468899999999999999999999999999
Q ss_pred HHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhc
Q 004263 718 MLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLASA 764 (765)
Q Consensus 718 a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r~~~~~~ 764 (765)
+++++|++++||||||||++++|+++.+||+|||+||+.+|+++.-+
T Consensus 719 a~~~v~~e~l~vnPDCGl~tr~~~~~~~kL~~mv~aa~~~r~~~~~~ 765 (766)
T PLN02475 719 MLAVLESNILWVNPDCGLKTRKYPEVKPALKNMVAAAKLLRAQLASA 765 (766)
T ss_pred HHHhCCcceEEEcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999988644
No 3
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=100.00 E-value=4.5e-189 Score=1659.35 Aligned_cols=754 Identities=58% Similarity=0.969 Sum_probs=723.0
Q ss_pred CceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 004263 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (765)
Q Consensus 1 ~~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~ 80 (765)
|+||++||||||++||||+|+|+||+|+||+++|+++++++|+++|+.|+++|||+||||||||||||||+++|||+||+
T Consensus 2 ~~~~~lGyPRiG~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~~Gld~it~Gdfs~yd~vLD~~~~lg~ip~ 81 (758)
T PRK05222 2 IKTHILGFPRIGPRRELKKALESYWAGKISEEELLATARELRARHWQRQKEAGLDLIPVGDFSYYDHVLDTAVLLGAIPE 81 (758)
T ss_pred CccccCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEeccCCcccHHHHHHHHHHhCCCch
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHcCCCCceEeehHHH
Q 004263 81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVS 160 (765)
Q Consensus 81 rf~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T 160 (765)
||....+..+|++||+|+||..+.++++|||||||||||+|||++++++|++..++++++|++|+++|.++|||||||+|
T Consensus 82 rf~~~~~~~~~~~yF~~arg~~~~~~~emtKwF~tNYhY~VPei~g~~~~~~~~~~~l~e~~~ak~~g~~~K~vl~GP~T 161 (758)
T PRK05222 82 RFGNLGGSVDLDTYFAMARGGKDVAALEMTKWFNTNYHYIVPEFDPDTQFKLTSNKLLDEFEEAKALGINTKPVLLGPVT 161 (758)
T ss_pred hhccccCCCccccceecccCCCCcccccceEEecCCCceeCcEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEccHHH
Confidence 99754444578999999999766668999999999999999999999999888899999999999999999999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEE
Q 004263 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240 (765)
Q Consensus 161 ~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l 240 (765)
|++|+++...| +++.+++++|+++|+++|++|+++||+|||||||+|+++++.++.+++.++|+.+.+..+.++++|
T Consensus 162 ~l~ls~~~~~~---~~~~ell~dl~~~y~~~l~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~y~~l~~~~~~~~i~l 238 (758)
T PRK05222 162 FLWLSKSKGEG---FDRLDLLDDLLPVYAELLAELAAAGAEWVQIDEPALVLDLPQEWLEAFKRAYEALAAAKPRPKLLL 238 (758)
T ss_pred HHHHhcccccC---CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCchhhcCCCHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 99999841233 489999999999999999999999999999999999999988899999999999987554579999
Q ss_pred EeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCC
Q 004263 241 ETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKD 320 (765)
Q Consensus 241 ~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~ 320 (765)
+||||++ +++++.|.++| ||+|||||++++.+|+++...+|.+|.|++|||||||+|+||+++++++|+++.+++ +
T Consensus 239 ~tyfg~~-~~~~~~l~~l~-Vd~l~LD~~~~~~~l~~l~~~~p~~k~l~lGVId~rn~~~ed~e~v~~ri~~a~~~v--e 314 (758)
T PRK05222 239 ATYFGSL-NDALDLLASLP-VDGLHLDLVRGPEQLAALLKYFPADKVLSAGVIDGRNIWRADLEAALALLEPLAAKV--D 314 (758)
T ss_pred Eeeccch-hhHHHHHHcCC-CCEEEEEeeCCccchHHHHhhcCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHhh--c
Confidence 9999999 88899999999 999999999987789999755788999999999999999999999999999999988 8
Q ss_pred cEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccC--CchHHHHHHHHHHHHhhhcCCCCCCHHH
Q 004263 321 KVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSG--QKDEAYFSSNAAAQASRKSSPRVTNEAV 398 (765)
Q Consensus 321 ~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v 398 (765)
+|||||||||+|+|+++..|++||+++|+|||||.|||+||++|++++++ .+..+.+.+|.++++.|+.|++++|++|
T Consensus 315 ~L~lspsCgL~~vP~~~~~E~~l~~~~~~~~afa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 394 (758)
T PRK05222 315 RLWVAPSCSLLHVPVDLDAETKLDPELKSWLAFAKQKLEELALLARALNGGRGAVAEALAANRAAIAARRTSPRVHNPAV 394 (758)
T ss_pred cEEEeCCCCCcCCCccccccccCCHHHHhhhhhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhCCccCCHHH
Confidence 99999999999999999999999999999999999999999999999976 2355578999999999999999999999
Q ss_pred HhHHhhCcCCCCcCCCChHHHHHHHHhhcCCCCccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 004263 399 QKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQ 478 (765)
Q Consensus 399 ~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q 478 (765)
|+|+++|+++|++|++||++|++.|+++|+||+||||||||||||++|+++|++|++|+||.++|+++++++|+++|+.|
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~IGSfPrp~~l~~ar~~~~~g~i~~~~~~~~~~~~i~~~V~~Q 474 (758)
T PRK05222 395 RARLAALTEADFQRQSPYAERAAAQRARLNLPLLPTTTIGSFPQTTEIRKARAAFKKGELSEEEYEAFIREEIARAIRLQ 474 (758)
T ss_pred HHHHHhCCHhhcccCCcHHHHHHHHHHHhCCCCCcccccCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcccCCCCccchhHHHHHhccCCeEEeccceeeecCCceeeCcEEEccCCCCcccchhHHHHHHhccCCCceEee
Q 004263 479 EELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGML 558 (765)
Q Consensus 479 ~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~~~g~~~~~~t~~~~~P~i~g~i~~~~p~~~~~~~~a~~~t~~~vK~~l 558 (765)
+++||||||||||+|+|||+||+++|+||.++.+||+|+||++||+||+|+|+|++++||+++|++|+|++|++|+|+||
T Consensus 475 e~~GlDvltdGE~~R~d~v~~F~~~l~Gf~~~~~g~v~~~g~~~~r~p~i~G~i~~~~p~~v~~~~~aq~~t~~~vK~~l 554 (758)
T PRK05222 475 EELGLDVLVHGEFERNDMVEYFGEQLDGFAFTQNGWVQSYGSRCVKPPIIYGDVSRPEPMTVEWIKYAQSLTDKPVKGML 554 (758)
T ss_pred HHcCCCEeecCceeeeehHHHHHHhCCCeeecCCceeeeeCCcCCCCCeeeCCCcCCCCCchHHHHHHHhccCCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccC
Q 004263 559 TGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGV 638 (765)
Q Consensus 559 tGPvTll~~s~~~~~~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v 638 (765)
|||+||+.||+.++|.++.+++.|||.+|++|+++|+++||++||||||+|++++++++.+|++|++|++++||.+++++
T Consensus 555 tGP~T~~~~s~~r~~~~~~e~~~dlA~al~~Ev~~L~~aG~~~IQiDEPal~e~~~~~~~~~~~~l~~~v~a~n~a~~~~ 634 (758)
T PRK05222 555 TGPVTILNWSFVRDDQPREETARQIALAIRDEVLDLEAAGIKIIQIDEPALREGLPLRRSDWDAYLDWAVEAFRLATSGV 634 (758)
T ss_pred ecHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeeCchhhhcCcccccCHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred CCCceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHH
Q 004263 639 QDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKM 718 (765)
Q Consensus 639 ~~~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a 718 (765)
+++++||||||||||+++++.|.+|++|+|+||++|+++++|+.|++ +++++.||+||||+||+++|++|+|+++|+++
T Consensus 635 ~~~~~i~tH~C~g~~~~i~~~i~~l~vD~~~lE~~rs~~e~L~~~~~-~~~~~~iglGVvd~~s~~ves~eei~~rI~~a 713 (758)
T PRK05222 635 KDETQIHTHMCYSEFNDIIDAIAALDADVISIETSRSDMELLDAFED-FGYPNEIGPGVYDIHSPRVPSVEEIEELLRKA 713 (758)
T ss_pred CCCCEEEEEEeccChHHHHHHHHhCCCCEEEEEecCCCchhHHHhhc-cCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHH
Confidence 98899999999999999999999999999999998999999999988 67788999999999999999999999999999
Q ss_pred HhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 004263 719 LAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLA 762 (765)
Q Consensus 719 ~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r~~~~ 762 (765)
++++|++++||||||||++++|+++++||++||+||+.+|+++.
T Consensus 714 ~~~v~~e~l~v~PdCGl~t~~~~~~~~kL~~mv~aa~~~r~~~~ 757 (758)
T PRK05222 714 LEVIPAERLWVNPDCGLKTRGWEETIAALKNMVAAAKELRAELA 757 (758)
T ss_pred HHhCChheEEEeCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999874
No 4
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=100.00 E-value=2.8e-186 Score=1633.99 Aligned_cols=747 Identities=62% Similarity=1.018 Sum_probs=712.3
Q ss_pred ccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCcccCC
Q 004263 6 VGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWN 85 (765)
Q Consensus 6 ~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~rf~~~ 85 (765)
+||||||++||||+|+|+||+|++++++|+++++++++++|+.|+++|||+||||||||||||||+++|||.||+||+..
T Consensus 1 ~g~PRig~~reLK~a~e~yw~gki~~~~L~~~~~~~~~~~~~~Q~~aGld~ItdGdfs~yD~vLd~~~~~g~ip~r~~~~ 80 (750)
T TIGR01371 1 LGFPRIGPKRELKKALESYWAGKITKEELLKVAKDLRKKNWKLQKEAGVDFIPSNDFSLYDHVLDTAVMLGAIPERFGNY 80 (750)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcCcCCcchHHHHHHHHHHhccchHhhhcc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999743
Q ss_pred CCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHcCCCCceEeehHHHHhhhc
Q 004263 86 GGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLS 165 (765)
Q Consensus 86 ~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T~l~l~ 165 (765)
.+..+++.||+||||..++.+++|||||||||||+|||+.++++|++..+.++++|++|+++|+++||||+||+||++||
T Consensus 81 ~~~~~~~~yFa~arG~~~~~~~emtKwFdtNYhY~VPe~~~~~~~~l~~~~~~~e~~~A~~~g~~~Kpvl~GP~T~l~ls 160 (750)
T TIGR01371 81 GGDLDLDTYFAMARGNKDVPALEMTKWFNTNYHYIVPELSPTTEFKLTSNKPLEEYLEAKELGIETKPVLLGPITFLKLS 160 (750)
T ss_pred ccccchhhhHHHhhCCCCcccceeEEEECCCCeeECCEECCCcceecCcchHHHHHHHHHhcCCCCeEEEECHHHHHHHh
Confidence 22357899999999975677899999999999999999999999999899999999999999999999999999999999
Q ss_pred cCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccC
Q 004263 166 KPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFA 245 (765)
Q Consensus 166 ~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg 245 (765)
+...+| +++.+++++|+++|++++++|.++||+|||||||+|++|++.++++++.++|+.|.++.+.++++||||||
T Consensus 161 k~~~~y---~~~~~ll~~L~~~y~~~l~~L~~~G~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~ki~l~tyFg 237 (750)
T TIGR01371 161 KAVEEP---FEPLSLLEKLLPVYKEVLKKLAEAGATWVQIDEPALVTDLSKEDLAAFKEAYTELSEALSGLKLLLQTYFD 237 (750)
T ss_pred CccCCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCchhcCCCCHHHHHHHHHHHHHHHhccCCceEEEECCCC
Confidence 842345 58999999999999999999999999999999999999999889999999999998876557999999999
Q ss_pred CCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEe
Q 004263 246 DVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVS 325 (765)
Q Consensus 246 ~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vs 325 (765)
++ +++++.|.++| |||||+||++++++++.+...+|++|.|++|||||||+|++|+++++++|+++.+.. ++|||+
T Consensus 238 ~~-~~~~~~l~~lp-vd~l~lD~v~~~~~L~~~~~~~~~~k~L~~GVIDgrniw~~d~~~~~~~l~~~~~~~--~~l~v~ 313 (750)
T TIGR01371 238 SV-GDALEALVSLP-VKGIGLDFVHGKGTLELVKAGFPEDKVLSAGVIDGRNIWRNDLEASLSLLKKLLAHV--GKLVVS 313 (750)
T ss_pred ch-HHHHHHHHcCC-CCEEEEEeccCcccHHHHHhcCCCCCeEEEEEEeccccccCCHHHHHHHHHHHHhhC--CCEEEe
Confidence 99 99999999999 999999999988899988655888999999999999999999999999999999954 579999
Q ss_pred CCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCC--chHHHHHHHHHHHHhhhcCCCCCCHHHHhHHh
Q 004263 326 TSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQ--KDEAYFSSNAAAQASRKSSPRVTNEAVQKPAA 403 (765)
Q Consensus 326 psC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 403 (765)
|||||+|||+|++.|++||+++|+|||||.|||+||++|++++++. +....+.+|.+++++|+.|++++|++||+|++
T Consensus 314 psCsLlhvP~~~~~e~~l~~~~~~~~~fa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 393 (750)
T TIGR01371 314 TSCSLLHVPVDLELETKLDPELKSWLAFAKEKLEELKALKRALNGNDDAVAFALEANAAAIAARKSSPRVNDAQVKARLA 393 (750)
T ss_pred CCCCcccCCccCcccccCCHHHHhhhhhHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhcCCccCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999763 34556899999999999999999999999999
Q ss_pred hCcCCCCcCCCChHHHHHHHHhhcCCCCccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 004263 404 ALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDI 483 (765)
Q Consensus 404 ~~~~~~~~r~~~~~~r~~~q~~~~~lp~~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gl 483 (765)
+|++++++|++||++|++.||++|+||+||||||||||||.+||+||++||+|+||.++|+++++++|+++|+.|+++||
T Consensus 394 ~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~vGSfPr~~~lk~are~~~~G~is~eel~~~~~~~i~~~i~~Qe~aGL 473 (750)
T TIGR01371 394 NLKEDDFRRRSPFKERLPLQQKRLNLPLLPTTTIGSFPQTPEVRKARAAYRKGEISEEEYEKFIKEEIKKVIKIQEELGL 473 (750)
T ss_pred hCCHhhcccCCcHHHHHHHHHHHhCCCCCcCcccCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCccchhHHHHHhccCCeEEeccceeeecCCceeeCcEEEccCCCCcccchhHHHHHHhccCCCceEeeechhH
Q 004263 484 DVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVT 563 (765)
Q Consensus 484 dvi~~GE~~r~D~v~~f~~~l~G~~~~~~g~~~~~~t~~~~~P~i~g~i~~~~p~~~~~~~~a~~~t~~~vK~~ltGPvT 563 (765)
|+||||||+|+|||+||++.|+||.++++||+|+||++||+||+|+|++++++||+++|++|||+++++|+|+|||||+|
T Consensus 474 Dvi~~GEf~r~D~v~~F~e~L~G~~~~~~G~v~~~g~~~v~~P~i~g~v~~~~~~~v~~~~~aq~lt~~~vK~~LtGPvT 553 (750)
T TIGR01371 474 DVLVHGEFERNDMVEYFGEKLAGFAFTQNGWVQSYGSRCVRPPIIYGDVSRPKPMTVKWSVYAQSLTSKPVKGMLTGPVT 553 (750)
T ss_pred CEeccCCeeeecHHHHHhhcCCcEEEecCcceeecCCcCCCCCEEeCCCCCCCCCchHHHHHHHhccCCCCceEEechHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred HhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCce
Q 004263 564 ILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQ 643 (765)
Q Consensus 564 ll~~s~~~~~~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~ 643 (765)
++.||+.+++.++.+++.+||.+|++|+++|+++||++||||||+|+++++++..+|.++++|++++||.++++++++++
T Consensus 554 ~l~~s~~r~d~~~~~~~~~la~a~~~ev~~L~~aG~~~IQIDEPaL~~~l~~~~~~~~~~l~~a~~~~~~~~~~v~~~~~ 633 (750)
T TIGR01371 554 ILNWSFVRDDIPRKEIAYQIALAIRDEVLDLEEAGIKIIQIDEPALREGLPLRKSDWPEYLDWAVEAFRLATSGVKDETQ 633 (750)
T ss_pred HHhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhhhcCCccchhHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 99999998888999999999999999999999999999999999999999988888999999999999999999988899
Q ss_pred EEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcC
Q 004263 644 VHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE 723 (765)
Q Consensus 644 I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~ 723 (765)
||||||||+|+++++.|.++++|+|+||++|++++.|+.|++.+++++.||+||||+||+|+|++|++.++|++++++++
T Consensus 634 I~~H~C~g~~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~~~ig~GVvD~~s~~ve~~eei~~~i~~a~~~i~ 713 (750)
T TIGR01371 634 IHTHMCYSEFNEIIESIADLDADVISIEASRSDMELLSAFKNGFGYPNGIGPGVYDIHSPRVPSVEEMADLIEKALQVLP 713 (750)
T ss_pred EEEEEECCCcHHHHHHHHhCCCCEEEEEecCCChhHHHHhhhhcccCCeEEEEEEeCCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998898888999886412467889999999999999999999999999999999
Q ss_pred CCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 004263 724 SNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRT 759 (765)
Q Consensus 724 ~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r~ 759 (765)
.+++||||||||++++|+++.++|+|||+||+.+|+
T Consensus 714 ~erl~vsPdCGL~tr~~~~~~~~L~~mv~aa~~~r~ 749 (750)
T TIGR01371 714 AERLWVNPDCGLKTRNWEEVIASLKNMVEAAKEARE 749 (750)
T ss_pred cceEEEeCCCCCCcCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999996
No 5
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=100.00 E-value=6.1e-96 Score=803.15 Aligned_cols=359 Identities=56% Similarity=0.928 Sum_probs=338.4
Q ss_pred ceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 004263 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (765)
Q Consensus 2 ~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~r 81 (765)
.||++||||||++||||+|+|+||+|+||+++|+++++++++++|+.|+++|||+||||||||||||||++++||+||+|
T Consensus 1 ~~~~~GyPrig~~reLk~a~e~~~~g~i~~~~L~~~~~~~~~~~~~~Q~~~Gl~~it~Gef~~yd~~ld~~~~l~~ip~r 80 (360)
T cd03312 1 KTHILGFPRIGANRELKKALESYWKGKISEEELLATAKELRLRHWKLQKEAGIDLIPVGDFSLYDHVLDTSVLLGAIPER 80 (360)
T ss_pred CCCcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeccCCchhHHHHHHHHHHhCCCchh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHcCCCCceEeehHHHH
Q 004263 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSY 161 (765)
Q Consensus 82 f~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T~ 161 (765)
|+...+..++++||+|+||..+..+++|||||||||||+|||+.+++++++..++++++|++|+++|.++|||||||+||
T Consensus 81 ~~~~~~~~~~~~yf~~arg~~~~~~~~mtk~f~tNyhY~vPei~~~~~~~~~~~~~l~~~~~a~~~~~~~K~~i~GP~T~ 160 (360)
T cd03312 81 FGALGGLVDLDTYFAMARGNQDVPALEMTKWFDTNYHYIVPELSPDTEFKLASNKLLDEYLEAKALGINTKPVLLGPVTF 160 (360)
T ss_pred hccccCCccHHHHHHHhcCCCCCcchhceeEecCCCceeCcEECCCcccccCcchHHHHHHHHHhcCCCCcEEEECHHHH
Confidence 98653345789999999997667889999999999999999999999998888999999999999999999999999999
Q ss_pred hhhccCCCC-cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEE
Q 004263 162 LLLSKPAKG-VEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240 (765)
Q Consensus 162 l~l~~~~~~-y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l 240 (765)
++||++ .+ |. ++.+++++|+++|++++++|+++||+|||||||+|+++.+.++.+.+.++|+.+.++.+..+++|
T Consensus 161 ~~ls~~-~~~Y~---~~~el~~dla~~y~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l 236 (360)
T cd03312 161 LKLSKA-KGGGF---DRLSLLDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLPEEWLAAFKRAYEELAKAAPGLKLLL 236 (360)
T ss_pred HHHhcc-cccCC---CHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCChhhcCCCHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 999985 44 63 89999999999999999999999999999999999999988899999999999987654579999
Q ss_pred EeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCC
Q 004263 241 ETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKD 320 (765)
Q Consensus 241 ~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~ 320 (765)
+||||++ +++++.|.++| ||+|+|||++++++++++...++++|.|++|||||||+|+||+++++++|+++.+++ ++
T Consensus 237 ~tyfg~~-~~~~~~l~~l~-Vd~l~le~~~~~~~l~~l~~~~~~~k~l~lGvId~rn~~~ed~e~i~~~i~~a~~~v-~~ 313 (360)
T cd03312 237 ATYFGSL-GENLDLLASLP-VDGLHLDLVRGPENLEAVLKAGFADKVLSAGVVDGRNIWRADLAASLALLETLAAIL-GD 313 (360)
T ss_pred Eecccch-HHHHHHHHcCC-CCEEEEEecCCcccHHHHHhcCCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHHh-cC
Confidence 9999999 89999999999 999999999987899999764667899999999999999999999999999999988 79
Q ss_pred cEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHH
Q 004263 321 KVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKA 367 (765)
Q Consensus 321 ~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~ 367 (765)
||||||||||+|+|+++..|++||+++++|||||+|||+||++|+++
T Consensus 314 ~l~lsp~CgL~~lP~~~~~e~~~~~~~~~~lafa~~k~~e~~~l~~~ 360 (360)
T cd03312 314 RLVVSPSCSLLHVPVDLENETKLDPELKSWLAFAKQKLEELALLARA 360 (360)
T ss_pred cEEEECCCCCcCCCcccccccCCCHHHHhhcchHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999863
No 6
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine []. The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A ....
Probab=100.00 E-value=4.9e-91 Score=741.16 Aligned_cols=308 Identities=50% Similarity=0.901 Sum_probs=258.7
Q ss_pred ceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 004263 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (765)
Q Consensus 2 ~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~r 81 (765)
+||++||||||++||||+|+|+||+|++|+++|+++++++|.++|+.|+++|||+||+|||||||||||+++|||+||+|
T Consensus 1 kt~~lGyPRiG~~RELK~alE~yW~g~~~~~~L~~~~~~lr~~~w~~q~~agld~ip~gdfs~YD~vLD~~~~~g~iP~r 80 (310)
T PF08267_consen 1 KTHILGYPRIGPNRELKKALEAYWKGKISEEELEQTAKELRKEHWQLQKEAGLDLIPVGDFSLYDHVLDTAVLLGAIPER 80 (310)
T ss_dssp -EE-S---SSTTTTHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHTT-SBEEES---SS-HHHHHHHHTT---GG
T ss_pred CCccccCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCchhhHHHHHHHHhccCChh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHcCCCCceEeehHHHH
Q 004263 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSY 161 (765)
Q Consensus 82 f~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T~ 161 (765)
|+......++++||+||||..+++|++|||||||||||+|||++++++|++..++++++|++|+++|+++||||+||+||
T Consensus 81 f~~~~~~~~l~~yFamARG~~~~~a~eMtKWFdTNYHY~VPE~~~~~~f~l~~~~~~~~~~eA~~~G~~~kpvL~GP~Tf 160 (310)
T PF08267_consen 81 FRHADGLDDLDRYFAMARGTDDVPALEMTKWFDTNYHYIVPEITGDTEFKLDSNKLLDEFREAKALGINTKPVLPGPVTF 160 (310)
T ss_dssp GCT-TSSSSHHHHHHHHHSCCCCT--EEEESTTSS-EEEE-EE-TTS----SCCHHHHHHHHHHHTTGGEEEEEE-HHHH
T ss_pred hccCCCCCCHhheeeeccCCCCCchHHHHHHhccCCCeEceEECCCCceeeCcchHHHHHHHHHhhhcCCeeEEEcHHHH
Confidence 98655567899999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEE
Q 004263 162 LLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIE 241 (765)
Q Consensus 162 l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~ 241 (765)
++|||+ .+| .++.+++++|+++|.++|++|.++||+|||||||+|++|+++++.+++..+|+.|. ...+++++|+
T Consensus 161 L~Lsk~-~~~---~~~~~ll~~l~~vY~~ll~~L~~~G~~~VQldEP~Lv~d~~~~~~~~~~~aY~~L~-~~~~~~ill~ 235 (310)
T PF08267_consen 161 LLLSKN-EDG---SDPLDLLDDLLPVYAELLKELAAAGVEWVQLDEPALVLDLPEEWLEAFEEAYEELA-AAPRPKILLA 235 (310)
T ss_dssp HHTSEE-TTC---CHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSGCHHHHHHHHHHHHHHC-CTTTSEEEEE
T ss_pred HHHcCc-CCC---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCeeecCCCHHHHHHHHHHHHHHh-cCCCCcEEEE
Confidence 999996 433 27899999999999999999999999999999999999999999999999999996 3346899999
Q ss_pred eccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhh-hCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhh
Q 004263 242 TYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKT-EFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGT 316 (765)
Q Consensus 242 tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~-~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~ 316 (765)
||||+. .++++.++++| |+|||+||++++.+++.+.. +||++|.|++|||||||+|++|+++++++|+++.+.
T Consensus 236 TYFg~~-~~~l~~l~~lp-v~~l~lDlv~~~~~l~~~~~~~~p~~k~L~~GvVDGRNiW~~dl~~~~~~l~~l~~~ 309 (310)
T PF08267_consen 236 TYFGDL-GDNLELLLDLP-VDGLHLDLVRGPENLEALLKYGFPADKVLSAGVVDGRNIWRTDLEAALALLEKLREK 309 (310)
T ss_dssp --SS---CCHHHHHTTSS-ESEEEEETTTHCHHHHHHHHHTTTTTSEEEEEEE-SSS-B---HHHHHHHHHHHHHC
T ss_pred CCCCch-hhHHHHHhcCC-CcEEEeeccCCcccHHHHHhcCCCCCCEEEEEEECCccccccCHHHHHHHHHHHHhc
Confidence 999998 89999999999 99999999998889999988 799999999999999999999999999999999764
No 7
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-79 Score=659.39 Aligned_cols=330 Identities=58% Similarity=0.900 Sum_probs=320.1
Q ss_pred CCCCccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCe
Q 004263 428 NLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGF 507 (765)
Q Consensus 428 ~lp~~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~ 507 (765)
++|.+|||+|||||||.+|+++|++|.+|+|+.++|+++++++|+++++.|+++|||++|||||+|+|||+||++.|+||
T Consensus 1 ~~~~~~tt~iGSfPr~~~l~~a~~~~~~G~i~~ee~~~~~~~~i~~~i~~q~~~Gldv~v~Ge~~r~Dmv~~F~e~l~G~ 80 (330)
T COG0620 1 KLPLLPTTVIGSFPRPEELRKAREKWKKGEISEEEYEEILREAIRRAIKDQEEAGLDVLVDGEFERNDMVEYFAEKLDGV 80 (330)
T ss_pred CCCcCcccccCCCCCChhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEecCCceeecHHHHHHHHHcCCe
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccceeeecCCceeeCcEEEccCCCCcccchhHHHHHHhccCCCceEeeechhHHhhhccccCCCCHHHHHHHHHHHH
Q 004263 508 AFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAI 587 (765)
Q Consensus 508 ~~~~~g~~~~~~t~~~~~P~i~g~i~~~~p~~~~~~~~a~~~t~~~vK~~ltGPvTll~~s~~~~~~~~~e~~~~la~al 587 (765)
.|+.+||+||||++||++|+|+|+|+++.||+++|+.|+|+++.+|+|+|||||+||+.|||.+++.++.+++.|+|.+|
T Consensus 81 ~~~~~~~v~~~~~~~~r~p~i~g~v~~~~~~~v~~~~~a~~~~~~~~K~~ltGP~ti~~~s~~~~~~~~~el~~~iA~al 160 (330)
T COG0620 81 KFTQNGWVRSYGSRCYRPPIIIGDVSRPEPMTVEEFLYAQSLTEKPVKGMLTGPVTILLWSFNRYYISREELAKDIALAL 160 (330)
T ss_pred eeccCCcEEEeccEEeeCceEecccccCCCCcchhhhhhhhccCccceeeeccHHhhHhhhccccCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccE
Q 004263 588 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 667 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~ 667 (765)
++|+++|+++||.+||||||+|++++|++. + ++|++|++++++.++++++++++||+|||||+|+++++.+.++++|+
T Consensus 161 ~~ev~~l~~agi~~iQiDEpal~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~~d~~i~~HiCy~e~~~~~~~i~~ld~dv 238 (330)
T COG0620 161 RDEVKDLEDAGIKIIQIDEPALREGLPLRR-D-DDYLEWAVEAINLAAAGVGADTQIHLHICYSEFNDIPDAIEALDADV 238 (330)
T ss_pred HHHHHHHHHcCCCEEeechhhhhcCCcccc-c-hHHHHHHHHHHHHHHhcCCCCcEEEEEEECCcccchhHHHhhcCCcE
Confidence 999999999999999999999999999887 5 79999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHH
Q 004263 668 ITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPAL 747 (765)
Q Consensus 668 isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL 747 (765)
+++|.++++++.+..|.. ..+++.||+||||+|++++|+++++.++|+++++.+|++++||||||||+++++++++++|
T Consensus 239 ~~~e~~~s~~~~~~~~~~-~~~~~~Ig~Gv~d~~~~~ve~~eei~~~i~k~~~~~~~e~~~vnPDCGl~~~~~~~a~~kL 317 (330)
T COG0620 239 IDIETSRSRMELLEVLEE-VKYDKEIGLGVVDIHSPKVESVEEIAARIRKALERVPPERLYVNPDCGLKTLPREIAEAKL 317 (330)
T ss_pred EeeeccccccchhHHHHh-ccCCCeeecceEecCCCCcCCHHHHHHHHHHHHHhCChheEEEcCCCCcccCcHHHHHHHH
Confidence 999988888888888877 5678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 004263 748 SNMVAAAKLLRTQ 760 (765)
Q Consensus 748 ~~mv~aa~~~r~~ 760 (765)
+||++|++.+|++
T Consensus 318 ~nmv~a~~~~r~e 330 (330)
T COG0620 318 ENMVKAAKEIREE 330 (330)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999864
No 8
>PRK01207 methionine synthase; Provisional
Probab=100.00 E-value=2e-74 Score=619.18 Aligned_cols=314 Identities=29% Similarity=0.431 Sum_probs=288.7
Q ss_pred CccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcc-cCCCCccchhHHHHHhccCCeEE
Q 004263 431 NLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVL-VHGEPERNDMVEYFGEQLSGFAF 509 (765)
Q Consensus 431 ~~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi-~~GE~~r~D~v~~f~~~l~G~~~ 509 (765)
.||||+|||||||++++++. ++++.+.+.|+. +.++|+.+|+.|+++|||+| +|||++|+|||+||+++|+||.+
T Consensus 3 ~l~TT~iGS~P~p~~~~~~~---~~~~~~~~~~e~-~~~ai~~~v~~Qe~aGlDiv~~dGe~~R~dmv~~f~~~l~G~~~ 78 (343)
T PRK01207 3 ALITQEIGSFRKPEYLSREF---HKIEGTDKFYEL-AERATLETLDVFENAGLDNIGIGGEMFRWEMYEHPAERIKGIIF 78 (343)
T ss_pred cccccccCCCCCCHHHHHHH---hccCCCHHHHHH-HHHHHHHHHHHHHHcCCCEEeeCCcEeechHHHHHHHhcCCeEe
Confidence 37999999999999976654 666664544555 55599999999999999988 89999999999999999999987
Q ss_pred eccceeeecCCceeeCcEEEccCCCCcccchhHHHHHHhccCCCceEeeechhHHhhhccccCCCCHHHHHHHHHHHHHH
Q 004263 510 TVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKD 589 (765)
Q Consensus 510 ~~~g~~~~~~t~~~~~P~i~g~i~~~~p~~~~~~~~a~~~t~~~vK~~ltGPvTll~~s~~~~~~~~~e~~~~la~al~~ 589 (765)
+||+|+||++||++|+|+|+|+++.|++++|++|||++|++|||++||||+||+.||+++.|.++++++.|+|.++++
T Consensus 79 --~g~vr~y~~~~~r~Pii~g~i~~~~~~~v~e~~~a~~~t~kpvK~~ltGP~Ti~~~S~~~~Y~~~~el~~~iA~al~~ 156 (343)
T PRK01207 79 --YGMVRSFDNRYYRKGSIIDRMERRSSFHLDEVEFVADNTKKPIKVPITGPYTMMDWSFNDFYRDRYDLAMEFARIINE 156 (343)
T ss_pred --cCeEEEeccccccCCeEEeeccCCCCCcHHHHHHHHHccCCCcEEEecCHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc------CCc-EEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccC-ChhHHHHHHH
Q 004263 590 EVEDLEKA------GIT-VIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYS-NFNDIIHSIM 661 (765)
Q Consensus 590 ev~~L~~a------G~~-~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g-~~~~i~~~l~ 661 (765)
|+++|+++ ||. +||||||+|.. +.++++|++++||.++++++. ++|+||||| +|+++++.|.
T Consensus 157 Ev~~L~~a~~~~~~G~~~~IQiDEPal~~--------~~~~l~~av~a~n~~~~gv~~--~i~~H~C~g~~~~~i~~~i~ 226 (343)
T PRK01207 157 ELKDIKSAWDRKSPGRKLEIQIDEPATTT--------HPDEMDIVVDSINKSVYGIDN--EFSIHVCYSSDYRLLYDRIP 226 (343)
T ss_pred HHHHHHhhhcccccCCceEEEEeCCCcCC--------ChHHHHHHHHHHHHHHhCCCC--cEEEEEEcCCChHHHHHHHH
Confidence 99999999 998 79999999964 357899999999999999974 699999999 8999999999
Q ss_pred cCCccEEEEecC-------------CCChhhHHHhhhccc----CCceeccccccCCCCCCCCHHHHHHHHHHHHhhc-C
Q 004263 662 DMDADVITIENS-------------RSDEKLLSVFREGVK----YRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL-E 723 (765)
Q Consensus 662 ~l~~D~isiE~~-------------r~~~~~L~~~~~~~~----~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i-~ 723 (765)
++++|+++||++ |++++.|+.|.+ +. +++.||+||||+||+.+|++|+|+++|+++++++ |
T Consensus 227 ~~~~d~~~~E~a~~~~~~~~~~~~~r~~~~~l~~~~~-~~~~l~~~~~Ig~GV~D~~s~~vEs~e~I~~ri~~~l~~v~~ 305 (343)
T PRK01207 227 ELNIDGYNLEYSNRDTLEPGTSDEKRPGFQDLKYFAE-HNESLQRKKFIGLGVTDVHIDYVEPVKLIEDRIRYALKIIKD 305 (343)
T ss_pred hCCCCEEEEEeccCcccccccccccccchhHHHHHHh-hccccCCCCeEEeeEEeCCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999965 556778888865 32 4668999999999999999999999999999999 8
Q ss_pred CCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 004263 724 SNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQL 761 (765)
Q Consensus 724 ~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r~~~ 761 (765)
++++||||||||++++|+++++||++|++||+.+|++|
T Consensus 306 ~e~l~vnpDCGl~t~~~~~a~~KL~~mv~aa~~~r~el 343 (343)
T PRK01207 306 PELVRLNPDCGLRTRSREIGEQKLRNMVAAKNNILKEL 343 (343)
T ss_pred cceEEEcCCCCCCcCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999764
No 9
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=4.5e-66 Score=562.72 Aligned_cols=317 Identities=27% Similarity=0.444 Sum_probs=296.6
Q ss_pred CccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeEEe
Q 004263 431 NLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFT 510 (765)
Q Consensus 431 ~~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~ 510 (765)
+||||||||||||++|++++++|.+|+++.++|+++++++|+.+|+.|+++|||+|||||++|.||++||.++|+||.++
T Consensus 2 ~l~tt~VGS~prp~~l~~~~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldiitDGE~rR~~~~~~f~~~l~G~~~~ 81 (339)
T PRK09121 2 LLPTSTAGSLPKPSWLAEPETLWSPWKLQGEELIEGKQDALRLSLQEQEDAGIDIVSDGEQTRQHFVTTFIEHLSGVDFE 81 (339)
T ss_pred CCCCceecCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceeCCccccchHHHHHHHhCCCceee
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccceeeecCCce-eeCcEEEccCCCCcccchhHHHHHHhccCCCceEeeechhHHhhhccccCCCCHHHHHHHHHHHHHH
Q 004263 511 VNGWVQSYGSRC-VKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKD 589 (765)
Q Consensus 511 ~~g~~~~~~t~~-~~~P~i~g~i~~~~p~~~~~~~~a~~~t~~~vK~~ltGPvTll~~s~~~~~~~~~e~~~~la~al~~ 589 (765)
..+|+++| +++ +++|+|+|+|++++|+++++++|+++.+++++|++||||+||+.|++.+.|.++++++.+||.+|++
T Consensus 82 ~~~~~~~~-~~~~~~~p~v~G~i~~~~~~~~~~~~~~~~~~~~~vK~~ipgP~tl~~~~~~~~Y~~~~el~~dlA~al~~ 160 (339)
T PRK09121 82 KRETVRIR-DRYDASVPTVVGAVSRQKPVFVEDAKFLRQQTTQPIKWALPGPMTMIDTLYDDHYKSREKLAWEFAKILNQ 160 (339)
T ss_pred cCCcceec-ccccCCCCEEEEecCCCCCCcHHHHHHHHhccCCCceEEeCcHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 88899999 665 8999999999987788899999999999899999999999999999988888999999999999999
Q ss_pred HHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCCh----------------
Q 004263 590 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNF---------------- 653 (765)
Q Consensus 590 ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~---------------- 653 (765)
|+++|+++||++||||||+|.... .+.++++++++|.++++++ ..+++|+|||++
T Consensus 161 Ei~~L~~aG~~~IQiDeP~l~~~~-------~~~~~~~v~~~n~~~~g~~--~~v~~HvC~G~~~~~~~~~~~~~~~~~g 231 (339)
T PRK09121 161 EAKELEAAGVDIIQFDEPAFNVFF-------DEVNDWGVAALERAIEGLK--CETAVHICYGYGIKANTDWKKTLGSEWR 231 (339)
T ss_pred HHHHHHHCCCCEEEecccHHhhhh-------HHHHHHHHHHHHHHHcCCC--CceEEEEeCCCCCCCccccccccccccc
Confidence 999999999999999999998632 3458899999999999997 668999999975
Q ss_pred --hHHHHHHHcCCccEEEEe--cCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEE
Q 004263 654 --NDIIHSIMDMDADVITIE--NSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWV 729 (765)
Q Consensus 654 --~~i~~~l~~l~~D~isiE--~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~v 729 (765)
..+++.|.++++|++++| ..|++++.|+.++ ++.|++||||+||+.+|++|+|++||++++++++++++|+
T Consensus 232 ~y~~i~~~l~~~~vd~~~lE~~~~r~~~~~l~~~~-----~~~v~lGvvd~k~~~lE~~e~I~~rI~~a~~~v~~~~l~l 306 (339)
T PRK09121 232 QYEEAFPKLQKSNIDIISLECHNSRVPMDLLELIR-----GKKVMVGAIDVASDTIETPEEVADTLRKALQFVDADKLYP 306 (339)
T ss_pred cHHHHHHHHHhCCCCEEEEEecCCCCCcHHHHhcc-----cCeEEeeeEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEEE
Confidence 488999999999999999 3555688888874 5789999999999999999999999999999999999999
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 004263 730 NPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLA 762 (765)
Q Consensus 730 sPdCGL~~~~~~~~~~kL~~mv~aa~~~r~~~~ 762 (765)
||||||++++++.+++||++|+++|+.+|++|+
T Consensus 307 spdCGf~~l~~~~a~~KL~~l~~~a~~~~~~~~ 339 (339)
T PRK09121 307 CTNCGMAPLSRDVARGKLNALSAGAEIVRRELA 339 (339)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999998864
No 10
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=1.1e-64 Score=550.13 Aligned_cols=310 Identities=21% Similarity=0.379 Sum_probs=278.9
Q ss_pred ceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 004263 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (765)
Q Consensus 2 ~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~r 81 (765)
|||+++|||+ ++||+|+|+||+|++++++|+++.++++.++|+.|+++|||+|||||||| |||+|+
T Consensus 5 tt~VGS~Prp---~~Lk~a~e~~~~g~i~~~~l~~~~~~a~~~~v~~Q~~aGlD~itdGe~r~-d~~~~~---------- 70 (326)
T PRK08575 5 KALVGSYPRP---VKLAKVISWYNSGKISKEKLEKAINENTKRFFELAKDVGIDYTTDGLFRW-DDIFDP---------- 70 (326)
T ss_pred eeeeCCCCCC---HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeCCCCcch-HHHHHH----------
Confidence 3555559999 99999999999999999999999999999999999999999999999998 988864
Q ss_pred ccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccC-CccchHHHHHHHHc----C--CCCceE
Q 004263 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYA-SHKAVQEYKEAKAL----G--METVPV 154 (765)
Q Consensus 82 f~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~-~~~~~~e~~~a~~~----g--~~~K~v 154 (765)
+|.++||. .+++|+|||||||||++|++.++ +++. .++++++|++|+++ | .++|++
T Consensus 71 ------------f~~~~~G~---~~~~~~k~f~~ny~y~~P~v~g~--i~~~~~~~~~~~~~~ak~~~~~~~~~~~~K~v 133 (326)
T PRK08575 71 ------------TISFISGV---EKGGLQRFYDNNFYYRQPVIKEK--INLKEENPYLQWLESAREIKEEVSLESKLKAV 133 (326)
T ss_pred ------------HHHHcCCc---ccCceeEecCCCceeeCeEEEee--ecCCCCCccHHHHHHHHHhHhccCCCCCccEE
Confidence 46678884 46789999999999999999995 5555 46799999999987 3 389999
Q ss_pred eehHHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeecccc-ccCCChHHHHHHHHHHHHHHccC
Q 004263 155 LVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTL-VLDLDSHKLQAFSDAYSELQSSL 233 (765)
Q Consensus 155 l~GP~T~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L-~~d~~~~~~~~~~~~y~~l~~~~ 233 (765)
||||+||+.++++ ++|. +.++++.+++.+|+++++.|++ ||+|||||||+| +++++.++++.+.++|+.+.++.
T Consensus 134 l~GP~T~~~~s~~-~~Y~---~~e~l~~~~a~~l~~e~~~L~~-G~~~IQiDEP~L~~~~~~~~~~~~~~~a~~~~~~~~ 208 (326)
T PRK08575 134 LPGPLTYAVLSDN-EYYK---NLIELMEDYASVVNSLIKELSS-VVDAVEIHEPSIFAKGIKRDTLEKLPEVYKTMAKNV 208 (326)
T ss_pred EecHHHHHHHhcc-ccCC---CHHHHHHHHHHHHHHHHHHHHc-CCCEEEecCcceeCCCCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999986 6774 7899999999999999999999 999999999999 89998889999999999998876
Q ss_pred CCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHH
Q 004263 234 SGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDL 313 (765)
Q Consensus 234 ~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~ 313 (765)
+ ++++||||||....++++.|.++| ||+||+||+++.++++.+.+.++ +|.|++|||||||+++|+++++.++|+++
T Consensus 209 ~-~~i~l~tyfg~~~~~~~~~l~~~~-vd~l~ld~~~~~~~l~~~~~~~~-~k~l~~GviD~rn~~vE~~eev~~~i~~~ 285 (326)
T PRK08575 209 N-IEKHLMTYFEINNLKRLDILFSLP-VTYFGIDVIENLKKLGRVYTYLK-GRKVYLGILNARNTKMEKISTIRRIVNKV 285 (326)
T ss_pred C-CCEEEECCCCCccccHHHHHhcCC-CcEEEEEecCChhHHHHHHhhCC-CCEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 3 699999999951124899999999 99999999987778888876676 79999999999999999999999999999
Q ss_pred hhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHH
Q 004263 314 AGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKA 367 (765)
Q Consensus 314 ~~~~~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~ 367 (765)
++ +|+++|||+|||||..+|++ .|.+||+.|+...+.
T Consensus 286 ~~-~~~~~l~v~pdcgl~~lp~~----------------~a~~KL~~l~~~~~~ 322 (326)
T PRK08575 286 KR-KGVSDIIVGNNTLFDFIPEV----------------VAVKKLKLLGKLEKL 322 (326)
T ss_pred Hh-cCCCeEEEeCCCCcccCcHH----------------HHHHHHHHHHHHHhh
Confidence 99 89999999999999999998 599999999988443
No 11
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=100.00 E-value=7.5e-62 Score=529.67 Aligned_cols=322 Identities=37% Similarity=0.570 Sum_probs=271.9
Q ss_pred ccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeEEec
Q 004263 432 LPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTV 511 (765)
Q Consensus 432 ~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~~ 511 (765)
||||+|||||||++|++|+++|.+|+++.++|++..+++|+++|+.|+++|||+||||||+|.||+.||.++|+|+....
T Consensus 1 ~~TT~VGS~prp~~l~~a~~~~~~g~~~~~~l~~~~~~ai~~~V~~Q~~~GldvitDGE~~R~~~~~~f~~~l~G~~~~~ 80 (324)
T PF01717_consen 1 FPTTVVGSFPRPEELKEAREAFAKGEISPEELEEIEDEAIADAVKRQEDAGLDVITDGEFRRGDFHSYFAERLDGFGDTL 80 (324)
T ss_dssp S-BB-SSB---SHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHT-SCBE-BTTT-SSTTHHHHTTSEEEEEES
T ss_pred CCCcccCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceecceeccCchhhhhhhhccCceeec
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999996677
Q ss_pred cceeeecCCceeeCcEEEccCCCCcccchhHHHHHHhccCCCceEeeechhHHhhhccccCCCCHHHHHHHHHHHHHHHH
Q 004263 512 NGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEV 591 (765)
Q Consensus 512 ~g~~~~~~t~~~~~P~i~g~i~~~~p~~~~~~~~a~~~t~~~vK~~ltGPvTll~~s~~~~~~~~~e~~~~la~al~~ev 591 (765)
++|++.||++++++|+++|++.+++|+.++++.+++..+.+++|+++|||.||+.+++.+.|.+..+++.++|.++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vK~~i~gP~tl~~~~~~~~y~~~~~~~~dla~a~~~ei 160 (324)
T PF01717_consen 81 NGDVQSFGERYYRPPIVVGKISRKKPFAVEEFKYAQSLTDKPVKGTITGPSTLADPSANRYYKDREELLEDLAEAYREEI 160 (324)
T ss_dssp SEEEEEETTEEEEEEEEEEEEEESS-SSHHHHHHHHHT-SSSBEEEEE-HHHHHHTSEESSSS-HHHHHHHHHHHHHHHH
T ss_pred cccceecccccccceEEecccccCCcchhHHHHHHHhccccccccccCHHHHhhchhccccCCCHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHH--HHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEEE
Q 004263 592 EDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVH--SFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVIT 669 (765)
Q Consensus 592 ~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~--a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~is 669 (765)
++|.++||++||||||+|++..+....+...++++++. +++.+.++ .++.+++|+|+||+...++.|.++++|+++
T Consensus 161 ~~l~~~G~~~iQiDeP~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~~H~C~~~~~~~~~~l~~~~vd~~~ 238 (324)
T PF01717_consen 161 RALYDAGCRYIQIDEPALSEGPPDASFDRDEYLDEAVAAEALNRAVKG--EDATVGVHVCRGNYPSILPLLADLNVDAFF 238 (324)
T ss_dssp HHHHHTT-SEEEEEETCHHCTSCSSHHHHHHHHHHHHHHHHHHHTTST--TTSEEEEEESSSCHCTTHHHHHCSS-SEEE
T ss_pred HHHHHCCCCEEEecchHhhcchhhhcccHHHHHHHHHHHHHHHhccCC--CCCEEEEEecCccchhhHHHHhhcccceEE
Confidence 99999999999999999999876544344556666644 44444444 468999999999999888999999999999
Q ss_pred EecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHH
Q 004263 670 IENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSN 749 (765)
Q Consensus 670 iE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~ 749 (765)
+|.+..+...++.|.+ ...++.|++||||++++.+|++|+|+++|++++++++++++|+||||||++++++++++||++
T Consensus 239 lE~~~~~~~~l~~l~~-~~~~k~v~lGvv~~~~~~vE~~e~v~~ri~~a~~~~~~~~l~~sPdCGfa~~~~~~a~~kL~~ 317 (324)
T PF01717_consen 239 LEFADRRAGDLEPLRE-LPSGKKVVLGVVDTKSPEVESPEEVADRIEEALEYVPLEQLWLSPDCGFASLTREEARAKLRN 317 (324)
T ss_dssp EEETSSTTGGGHHCHC-TTTTSEEEEEES-TTSSS--THHHHHHHHHHHHTTS-GGGEEEEESSTSTTS-HHHHHHHHHH
T ss_pred eecccCCcccHHHHHh-CcCCceEEEEEEcCCCCCcCCHHHHHHHHHHHHhcCccccEEEcCCCCCCCCCHHHHHHHHHH
Confidence 9954433333444443 334899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 004263 750 MVAAAKL 756 (765)
Q Consensus 750 mv~aa~~ 756 (765)
||+||+.
T Consensus 318 ~v~aa~~ 324 (324)
T PF01717_consen 318 MVEAARE 324 (324)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 9999974
No 12
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=5.4e-61 Score=521.30 Aligned_cols=313 Identities=16% Similarity=0.206 Sum_probs=280.4
Q ss_pred CccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeEEe
Q 004263 431 NLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFT 510 (765)
Q Consensus 431 ~~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~ 510 (765)
.|+||+|||||||.+|++++++||+|++|.++|+++.+++++++|+.|+++|||+||||||+|.||+.+|.+.++|+.+
T Consensus 2 ~~~tt~VGS~Prp~~Lk~a~e~~~~g~i~~~~l~~~~~~a~~~~v~~Q~~aGlD~itdGe~r~d~~~~~f~~~~~G~~~- 80 (326)
T PRK08575 2 KIKKALVGSYPRPVKLAKVISWYNSGKISKEKLEKAINENTKRFFELAKDVGIDYTTDGLFRWDDIFDPTISFISGVEK- 80 (326)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeCCCCcchHHHHHHHHHHcCCccc-
Confidence 4789999999999999999999999999999999999999999999999999999999999997799999999999854
Q ss_pred ccceeeecCCce-eeCcEEEccCCCCcc-cchhHHHHHHhcc-----CCCceEeeechhHHhhhccccCCCCHHHHHHHH
Q 004263 511 VNGWVQSYGSRC-VKPPIIYGDVSRPKA-MTVFWSSMAQSMT-----KRPMKGMLTGPVTILNWSFVRNDQPRFETCYQI 583 (765)
Q Consensus 511 ~~g~~~~~~t~~-~~~P~i~g~i~~~~p-~~~~~~~~a~~~t-----~~~vK~~ltGPvTll~~s~~~~~~~~~e~~~~l 583 (765)
.|+++||++|| |++|+|+|++++.++ ..+++++++++++ ++++|++||||+|++.|++...+.+.++++.++
T Consensus 81 -~~~~k~f~~ny~y~~P~v~g~i~~~~~~~~~~~~~~ak~~~~~~~~~~~~K~vl~GP~T~~~~s~~~~Y~~~e~l~~~~ 159 (326)
T PRK08575 81 -GGLQRFYDNNFYYRQPVIKEKINLKEENPYLQWLESAREIKEEVSLESKLKAVLPGPLTYAVLSDNEYYKNLIELMEDY 159 (326)
T ss_pred -CceeEecCCCceeeCeEEEeeecCCCCCccHHHHHHHHHhHhccCCCCCccEEEecHHHHHHHhccccCCCHHHHHHHH
Confidence 57999999997 999999999997533 3599999999885 248999999999999999977667889999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEeccccc-ccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCCh-hHHHHHHH
Q 004263 584 ALAIKDEVEDLEKAGITVIQIDEAAL-REGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNF-NDIIHSIM 661 (765)
Q Consensus 584 a~al~~ev~~L~~aG~~~IQiDEPaL-~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~-~~i~~~l~ 661 (765)
|.+|++|+++|.+ ||++||||||+| ..+++ .+.+++++++|+.+.++++ .++++|+|||.- .++++.|.
T Consensus 160 a~~l~~e~~~L~~-G~~~IQiDEP~L~~~~~~------~~~~~~~~~a~~~~~~~~~--~~i~l~tyfg~~~~~~~~~l~ 230 (326)
T PRK08575 160 ASVVNSLIKELSS-VVDAVEIHEPSIFAKGIK------RDTLEKLPEVYKTMAKNVN--IEKHLMTYFEINNLKRLDILF 230 (326)
T ss_pred HHHHHHHHHHHHc-CCCEEEecCcceeCCCCC------HHHHHHHHHHHHHHHhcCC--CCEEEECCCCCccccHHHHHh
Confidence 9999999999999 999999999999 77643 3467899999999999984 689999999941 24899999
Q ss_pred cCCccEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChh
Q 004263 662 DMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYS 741 (765)
Q Consensus 662 ~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~ 741 (765)
++++|+|++|..+++ +.|..+.+ +..++.|++||||+||+++|++|+|+++|+++++ ++++++||+|||||.+++++
T Consensus 231 ~~~vd~l~ld~~~~~-~~l~~~~~-~~~~k~l~~GviD~rn~~vE~~eev~~~i~~~~~-~~~~~l~v~pdcgl~~lp~~ 307 (326)
T PRK08575 231 SLPVTYFGIDVIENL-KKLGRVYT-YLKGRKVYLGILNARNTKMEKISTIRRIVNKVKR-KGVSDIIVGNNTLFDFIPEV 307 (326)
T ss_pred cCCCcEEEEEecCCh-hHHHHHHh-hCCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHHh-cCCCeEEEeCCCCcccCcHH
Confidence 999999999976654 34555554 2126789999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHH
Q 004263 742 EVKPALSNMVAAAKLLR 758 (765)
Q Consensus 742 ~~~~kL~~mv~aa~~~r 758 (765)
.|++||++|++| +.++
T Consensus 308 ~a~~KL~~l~~~-~~~~ 323 (326)
T PRK08575 308 VAVKKLKLLGKL-EKLE 323 (326)
T ss_pred HHHHHHHHHHHH-Hhhc
Confidence 999999999999 5553
No 13
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=2e-60 Score=523.72 Aligned_cols=326 Identities=17% Similarity=0.208 Sum_probs=286.8
Q ss_pred CCCccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeE
Q 004263 429 LPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFA 508 (765)
Q Consensus 429 lp~~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~ 508 (765)
.|+|+||||||||||++|+++|++|.+|+||.++|+++++++|+.+|+.|+++|||+||||||+|.+|..+|.+.|+|+.
T Consensus 5 ~~~~~tt~VGS~prP~~L~~a~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldvitDGE~rR~~w~~df~~~l~Gv~ 84 (368)
T PRK06520 5 KAPFRADVVGSFLRPAAIKQARQQFAAGEIDAAALRKIEDMEIRKVVEKQRACGLKVVTDGEFRRAWWHFDFFDGLQGVE 84 (368)
T ss_pred CCCCCcceeccCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccccceeeehhhhcCCee
Confidence 38899999999999999999999999999999999999999999999999999999999999999866669999999986
Q ss_pred Eec-cceeeecCCc-eeeCcEEEccCCCC--cccchhHHHHHHhcc-CCCceEeeechhHHhhh-----ccccCCCCHHH
Q 004263 509 FTV-NGWVQSYGSR-CVKPPIIYGDVSRP--KAMTVFWSSMAQSMT-KRPMKGMLTGPVTILNW-----SFVRNDQPRFE 578 (765)
Q Consensus 509 ~~~-~g~~~~~~t~-~~~~P~i~g~i~~~--~p~~~~~~~~a~~~t-~~~vK~~ltGPvTll~~-----s~~~~~~~~~e 578 (765)
... .+...++|++ +++.|+|+|+|+++ +|+ +++++|+++.+ +.++|+++|||.||+.| +..+.|.++++
T Consensus 85 ~~~~~~g~~f~~~~~~~~~~~v~G~I~~~~~~~~-~~~~~~l~~~~~~~~~K~~ipgP~~l~~~~~~~~~~~~~Y~~~~~ 163 (368)
T PRK06520 85 RYEAEQGIQFNGVQTKARGVRVTGKLDFPDDHPM-LEDFRFLKSISGDATPKMTIPSPSVLHFRGGRKAIDATVYPDLDD 163 (368)
T ss_pred eecccCceeecCcccccCCeEEEEEecCCCCCch-HHHHHHHHhhccCCCCCEEcCcHHHHHhhccccccchhcCCCHHH
Confidence 321 1224466664 57889999999985 788 89999999987 45899999999999865 55556678899
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCC--------CCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEecc
Q 004263 579 TCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLP--------LRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCY 650 (765)
Q Consensus 579 ~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~--------l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~ 650 (765)
++.+||.+|++|+++|+++||++||||||+|...++ .++.+.+...+++++++|.++++++.++.|++|+||
T Consensus 164 ~~~dlA~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~p~d~~v~~HiC~ 243 (368)
T PRK06520 164 YFDDLAKTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALAGKPADLTIGLHVCR 243 (368)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEeec
Confidence 999999999999999999999999999999987543 112245666789999999999999988999999999
Q ss_pred CChh----------HHHHHHH-cCCccEEEEec--CCC-ChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHH
Q 004263 651 SNFN----------DIIHSIM-DMDADVITIEN--SRS-DEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRIN 716 (765)
Q Consensus 651 g~~~----------~i~~~l~-~l~~D~isiE~--~r~-~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~ 716 (765)
||++ .+++.|. ++++|++++|. .|+ ++++|+.++. .++.|++||||+|++.+|++|+|++||+
T Consensus 244 Gn~~~~~~~~~~y~~i~~~L~~~~~vd~~~lE~~~~r~g~~e~L~~l~~---~~k~v~lGvvd~~~~~vE~~e~I~~rI~ 320 (368)
T PRK06520 244 GNFRSTWISEGGYEPVAETLFGGVNVDAFFLEYDNERAGGFEPLRFIPP---GHQQVVLGLITTKNGELENADDVKARLA 320 (368)
T ss_pred CCCCCccccccchhHHHHHHHhhcCCCeEEEEeccCCCCCcchHHHhhh---cCCEEEeeEEeCCCCCCCCHHHHHHHHH
Confidence 9975 8999975 79999999993 454 4688888865 2568999999999999999999999999
Q ss_pred HHHhhcCCCcEEEcCCCCCC------CCChhhHHHHHHHHHHHHHHHH
Q 004263 717 KMLAVLESNILWVNPDCGLK------TRKYSEVKPALSNMVAAAKLLR 758 (765)
Q Consensus 717 ~a~~~i~~~~l~vsPdCGL~------~~~~~~~~~kL~~mv~aa~~~r 758 (765)
++++++|+++||+||||||+ .++++++++||++|+++|+.++
T Consensus 321 ~a~~~v~~~~l~lspdCGf~s~~~~~~l~~~~~~~KL~~l~~~a~~~w 368 (368)
T PRK06520 321 EAAKFVPLEQLCLSPQCGFASTEEGNSLSEEQQWAKLRLVVEIANEVW 368 (368)
T ss_pred HHHHhCCHHHEeeCcccCCCccccCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999 5799999999999999999863
No 14
>PRK06233 hypothetical protein; Provisional
Probab=100.00 E-value=3.2e-60 Score=523.28 Aligned_cols=325 Identities=19% Similarity=0.223 Sum_probs=282.6
Q ss_pred CCccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeEE
Q 004263 430 PNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAF 509 (765)
Q Consensus 430 p~~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~ 509 (765)
|+|++++|||||||++|++++++|.+|+||.++|+++++++|+.+|+.|+++|||+||||||+|.||+.+|.+.|+||.+
T Consensus 7 ~~~~~~~VGS~prP~~L~~a~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldiitDGE~rR~~~~~~f~~~l~G~~~ 86 (372)
T PRK06233 7 APFRFDIVGSFLRPERLKEAREQFAIGEISQDQLLKIQHAEIKRLVKEQVELGLKAVTDGEFNRSWWHLDFLWGLNGVGK 86 (372)
T ss_pred CCcccceEeeCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCcCCccHHHHHHhhcCceEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred eccceeeecCCc----eeeCcEEEccCCC--CcccchhHHHHHHhcc--CCCceEeeechhHHhhhccc----cCCCCHH
Q 004263 510 TVNGWVQSYGSR----CVKPPIIYGDVSR--PKAMTVFWSSMAQSMT--KRPMKGMLTGPVTILNWSFV----RNDQPRF 577 (765)
Q Consensus 510 ~~~g~~~~~~t~----~~~~P~i~g~i~~--~~p~~~~~~~~a~~~t--~~~vK~~ltGPvTll~~s~~----~~~~~~~ 577 (765)
. ++.++|+.. .+.+|.|+|+|++ .+|+ +++++|+++.+ +.++|++||||.||+.++.. ..|.+++
T Consensus 87 ~--~~~~~~~~~~~~~~~~~~~v~g~i~~~~~~p~-~~~~~~~~~~~~~~~~~K~tipgP~~l~~~~~~~~~~~~Y~~~e 163 (372)
T PRK06233 87 Y--EYEDSYKFHGAKTRTDNAELAGKVAFNPDHPF-FAAFKYLKSIVPEGVLPKQTIPSPSLLFRDNRSDNWPKFYDSWD 163 (372)
T ss_pred e--cCcceeeecCCcCCCCCCEEEEeeccCCCCch-HHHHHHHHhhhcCCCceEEEecCcHHhccCcccccccccCCCHH
Confidence 3 555565533 2567999999997 5788 89999999986 35689999999999866443 2456789
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCC---CCCCC---HHHHH---HHHHHHHHHHHccCCCCceEEEEe
Q 004263 578 ETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLP---LRKSE---QDFYL---KWAVHSFRITNCGVQDTTQVHTHM 648 (765)
Q Consensus 578 e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~---l~~~~---~~~~l---~~~v~a~~~~~~~v~~~~~I~~H~ 648 (765)
+++.+||.+|++|+++|+++||++||||||++..... ....+ ..+++ +.+++++|.++++++.+++|++|+
T Consensus 164 el~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~p~d~~i~~H~ 243 (372)
T PRK06233 164 DYLDDLAQAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALADLPEDLTVTTHI 243 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHhCCCcCCEEEEEe
Confidence 9999999999999999999999999999999765322 10111 22233 445669999999999889999999
Q ss_pred ccCChh----------HHHHHHHcCCccEEEEec--CCC-ChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHH
Q 004263 649 CYSNFN----------DIIHSIMDMDADVITIEN--SRS-DEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRI 715 (765)
Q Consensus 649 C~g~~~----------~i~~~l~~l~~D~isiE~--~r~-~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i 715 (765)
|||||. .+++.|.++++|++++|. .|+ ++++|+.+.. ...++.|++||||+|++.+|++|+|++||
T Consensus 244 C~Gn~~~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~~r~~~~~~L~~~~~-~~~~k~v~lGvid~~~~~vE~~e~I~~rI 322 (372)
T PRK06233 244 CRGNFKSTYLFSGGYEPVAKYLGQLNYDGFFLEYDNDRSGSFEPLKQIWN-NRDNVRIVLGLITSKFPELEDEDEIIARI 322 (372)
T ss_pred eCCCCCCcccccCcHHHHHHHHHhCCCCEEEEecCCCccCccchHHHhhc-cCCCCEEEeeeecCCCCCCCCHHHHHHHH
Confidence 999986 899999999999999993 443 5778887643 22357899999999999999999999999
Q ss_pred HHHHhhcCCCcEEEcCCCCCC------CCChhhHHHHHHHHHHHHHHHH
Q 004263 716 NKMLAVLESNILWVNPDCGLK------TRKYSEVKPALSNMVAAAKLLR 758 (765)
Q Consensus 716 ~~a~~~i~~~~l~vsPdCGL~------~~~~~~~~~kL~~mv~aa~~~r 758 (765)
+++++++|++++|+||||||+ .++++++++||++|+++|+.++
T Consensus 323 ~~a~~~v~~e~l~lspdCGf~s~~~g~~l~~~~~~~KL~~l~~~a~~~w 371 (372)
T PRK06233 323 DEATEYVPLSNLALSTQCGFASTEEGNILTEADQWAKLALVKKIADKVW 371 (372)
T ss_pred HHHHHhCCHHHEEecCCCCCccccccCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999 8899999999999999999875
No 15
>PRK04326 methionine synthase; Provisional
Probab=100.00 E-value=3.4e-58 Score=502.32 Aligned_cols=324 Identities=35% Similarity=0.572 Sum_probs=298.1
Q ss_pred hcCCCCccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccC
Q 004263 426 KLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLS 505 (765)
Q Consensus 426 ~~~lp~~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~ 505 (765)
+.+.|+||||++||||||.+|++++++||+|+++.+++.++.+++++.+|+.|+++|+|+||||||+|.||+.||...++
T Consensus 3 ~~~~~~~~~t~vGS~Prp~~l~~a~~~~~~g~~~~~~l~~~~~~a~~~~v~~q~~~Gld~itdGe~~r~~~~~~f~~~~~ 82 (330)
T PRK04326 3 HDKLPFLPTTVVGSYPKPKWLREAIRLHKAGKISEEDLHEAFDDAVRLVVKDHERAGVDIPVDGEMRREEMVEYFAERIE 82 (330)
T ss_pred CCCCCCCcCccccCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCeEEcHhHHHHHHHhCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEeccceeeecCCceeeCcEEEccCCCCcccchhHHHHHHhcc-CCCceEeeechhHHhhhccccCCCCHHHHHHHHH
Q 004263 506 GFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMT-KRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIA 584 (765)
Q Consensus 506 G~~~~~~g~~~~~~t~~~~~P~i~g~i~~~~p~~~~~~~~a~~~t-~~~vK~~ltGPvTll~~s~~~~~~~~~e~~~~la 584 (765)
|+.+ +|+++|||++||++|+|+|+++...+..+++++++++.+ ++++|++++||+|++.++....+.+..+++.+++
T Consensus 83 G~~~--~~~~~~~~~~~~~~P~v~g~~~~~~~~~l~~~~~~~~~~~~~~vk~~l~GP~Tla~~~~~~~y~~~~e~~~~l~ 160 (330)
T PRK04326 83 GFKF--YGPVRVWGNNYFRKPSVVGKIEYKEPMLVDEFEFAKSVTYTRPVKVPITGPYTIAEWSFNEYYKDKEELVFDLA 160 (330)
T ss_pred ceec--cCceeccccccccCCeEEEeccCCCCCcHHHHHHHHhcccCCCceEeccCHHHHHhhcccccCCCHHHHHHHHH
Confidence 9975 678999999999999999999876777799999999997 7999999999999998877555567889999999
Q ss_pred HHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCC
Q 004263 585 LAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMD 664 (765)
Q Consensus 585 ~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~ 664 (765)
.++++++++|.++|+++||||||++... +.+ .++++++++.+.+++. ..+++|+|||+++++++.|.+++
T Consensus 161 ~~~~~~i~~l~~~G~~~iqidEP~l~~~-------~~~-~~~~~~~l~~~~~~~~--~~v~lH~C~G~~~~~~~~l~~~~ 230 (330)
T PRK04326 161 KVINEEIKNLVEAGAKYIQIDEPALATH-------PED-VEIAVEALNRIVKGIN--AKLGLHVCYGDYSRIAPYILEFP 230 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEecCchhhcC-------HHH-HHHHHHHHHHHHhCCC--CEEEEEEeCCCcHHHHHHHHhCC
Confidence 9999999999999999999999999862 233 4899999999999884 68999999999999999999999
Q ss_pred ccEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHH
Q 004263 665 ADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVK 744 (765)
Q Consensus 665 ~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~ 744 (765)
+|+|++|...++.+.|+.+++ ...++.+++||||+++++++++|+++++++++++.++.++++|+|||||.+.+++.++
T Consensus 231 vd~i~~d~~~~~~~~l~~~~~-~~~~~~l~~Gvv~~~~~~~~~~e~v~~~v~~~~~~~~~~~~~lsp~Cgl~~~~~~~a~ 309 (330)
T PRK04326 231 VDQFDLEFANGNYKLLDLLKE-YGFDKELGLGVIDVHSARVESVEEIKEAIKKGLEYVPPEKLYINPDCGLKLLPREIAY 309 (330)
T ss_pred CCEEEEEeCCCCchhHHHhhc-cCCCCeEEeEEEeCCCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCCCCcCCHHHHH
Confidence 999999965545567777766 3347789999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004263 745 PALSNMVAAAKLLRTQLA 762 (765)
Q Consensus 745 ~kL~~mv~aa~~~r~~~~ 762 (765)
+||++|+++++.+|+++.
T Consensus 310 ~kl~~l~~~a~~~~~~~~ 327 (330)
T PRK04326 310 QKLVNMVKATREVREELD 327 (330)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999875
No 16
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=100.00 E-value=8.6e-57 Score=491.69 Aligned_cols=314 Identities=46% Similarity=0.708 Sum_probs=278.4
Q ss_pred cceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeEEecc
Q 004263 433 PTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVN 512 (765)
Q Consensus 433 ~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~~~ 512 (765)
|||||||||||++|+++++++.+|+++.++|+++++++|+.+|+.|+++|||+||||||+|.||+.||.++|+||.. .
T Consensus 1 ~tt~vGS~prp~~l~~a~~~~~~g~~~~~~l~~~~~~ai~~~v~~Q~~~GldiitDGe~~r~~~~~~f~~~l~G~~~--~ 78 (332)
T cd03311 1 PTTTVGSFPRPKELREARAKFKKGEISAEELREAEDDAIADAVKDQEEAGLDVVTDGEFRRSDMVEYFLERLDGFEF--T 78 (332)
T ss_pred CCceecCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcccccHHHHHHHhCCceee--c
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999975 5
Q ss_pred ceeeecCCceeeCcEEEccCCCCcccchhHHHHHHhccC-CCceEeeechhHHhhhccccC---CCCHHHHHHHHHHHHH
Q 004263 513 GWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTK-RPMKGMLTGPVTILNWSFVRN---DQPRFETCYQIALAIK 588 (765)
Q Consensus 513 g~~~~~~t~~~~~P~i~g~i~~~~p~~~~~~~~a~~~t~-~~vK~~ltGPvTll~~s~~~~---~~~~~e~~~~la~al~ 588 (765)
||+++|+++||++|.++|++++..++.+.+.+++++.+. +++|++++||+|++.+++... +.+.++++.++|.+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~l~GP~Tla~~~~~~~~~~y~~~~el~~~la~~~~ 158 (332)
T cd03311 79 GWVQSYGSRYYKPPGIVGDVSRRPPMTVEEGKIAQSLTHPKPLKGILTGPVTIPSPSFVRFRGYYPSREELAMDLALALR 158 (332)
T ss_pred cceeeeccceeeCCeeecccccCCCCeEEEEEEeccCCCCccccccCCCCeeECCchhhcccccCCCHHHHHHHHHHHHH
Confidence 689999999999999999998777777889999988876 899999999999999998765 6788999999999999
Q ss_pred HHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCCh----------hHHHH
Q 004263 589 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNF----------NDIIH 658 (765)
Q Consensus 589 ~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~----------~~i~~ 658 (765)
+++++|.++||++||||||++...++.. ..+...+....+++.+. +.+.+.++++|+|||++ .++++
T Consensus 159 ~e~~~l~~aG~~~iQiDEP~l~~~~~~~--~~~~~~~~~~~~~~~l~-~~~~~~~v~lHiC~G~~~~~~~~~~~y~~i~~ 235 (332)
T cd03311 159 EEIRDLYDAGCRYIQIDEPALAEGLPLE--PDDLAADYLKWANEALA-DRPDDTQIHTHICYGNFRSTWAAEGGYEPIAE 235 (332)
T ss_pred HHHHHHHHcCCCEEEeecchhhccCCcc--cHHHHHHHHHHHHHHHH-hCCCCCEEEEEEECCCCcccccccCcHHHHHH
Confidence 9999999999999999999998875432 12223334444444433 32346789999999999 78999
Q ss_pred HHHcCCccEEEEecCCC---ChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 004263 659 SIMDMDADVITIENSRS---DEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGL 735 (765)
Q Consensus 659 ~l~~l~~D~isiE~~r~---~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL 735 (765)
.|.++++|+|++|.... +++.|+.+.. ++.+++||||++++++|++|+++++|++++++++.+++||||||||
T Consensus 236 ~l~~~~vd~~~le~~~~~~~~~~~l~~~~~----~k~l~~GvVd~~~~~~e~~e~v~~ri~~~~~~~~~~~l~lsp~CGl 311 (332)
T cd03311 236 YIFELDVDVFFLEYDNSRAGGLEPLKELPY----DKKVGLGVVDVKSPEVESPEEVKDRIEEAAKYVPLEQLWVSPDCGF 311 (332)
T ss_pred HHHhCCCCEEEEEEcCCCCcchHHHHhCCC----CCEEEeeeecCCCCCCCCHHHHHHHHHHHHhhCCHHHEEECCCCCC
Confidence 99999999999995432 5666665543 7899999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHH
Q 004263 736 KTRKYSEVKPALSNMVAAAK 755 (765)
Q Consensus 736 ~~~~~~~~~~kL~~mv~aa~ 755 (765)
++++++.+++||++|+++++
T Consensus 312 ~~~~~~~a~~kl~~~~~~~~ 331 (332)
T cd03311 312 ATRERGNALTKLENMVKAAL 331 (332)
T ss_pred CcCCCchhHHHHHHHHHHhh
Confidence 99999999999999999985
No 17
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=100.00 E-value=4e-55 Score=480.42 Aligned_cols=296 Identities=20% Similarity=0.222 Sum_probs=263.8
Q ss_pred ceecccCCC---cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeE--
Q 004263 434 TTTIGSFPQ---TMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFA-- 508 (765)
Q Consensus 434 tt~iGSfPr---~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~-- 508 (765)
||++| ||| ++|||+|+++||+|+||.++|+++++++++++|+.|+++|||+||+|||+|+|+|++|...|+|+.
T Consensus 2 ~~~~G-yPrig~~reLk~a~e~~~~g~i~~~~L~~~~~~~~~~~~~~Q~~~Gl~~it~Gef~~yd~~ld~~~~l~~ip~r 80 (360)
T cd03312 2 THILG-FPRIGANRELKKALESYWKGKISEEELLATAKELRLRHWKLQKEAGIDLIPVGDFSLYDHVLDTSVLLGAIPER 80 (360)
T ss_pred CCcCC-CCCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeccCCchhHHHHHHHHHHhCCCchh
Confidence 57777 999 899999999999999999999999999999999999999999999999999999999999877764
Q ss_pred -------------E---------eccceeeecCCce-eeCcEEEccCCC--CcccchhHHHHHHhccCCCceEeeechhH
Q 004263 509 -------------F---------TVNGWVQSYGSRC-VKPPIIYGDVSR--PKAMTVFWSSMAQSMTKRPMKGMLTGPVT 563 (765)
Q Consensus 509 -------------~---------~~~g~~~~~~t~~-~~~P~i~g~i~~--~~p~~~~~~~~a~~~t~~~vK~~ltGPvT 563 (765)
| +..+|++|||||| |++|+|.|++.+ +.+..++++++++++ +.++|++||||+|
T Consensus 81 ~~~~~~~~~~~~yf~~arg~~~~~~~~mtk~f~tNyhY~vPei~~~~~~~~~~~~~l~~~~~a~~~-~~~~K~~i~GP~T 159 (360)
T cd03312 81 FGALGGLVDLDTYFAMARGNQDVPALEMTKWFDTNYHYIVPELSPDTEFKLASNKLLDEYLEAKAL-GINTKPVLLGPVT 159 (360)
T ss_pred hccccCCccHHHHHHHhcCCCCCcchhceeEecCCCceeCcEECCCcccccCcchHHHHHHHHHhc-CCCCcEEEECHHH
Confidence 1 1245899999998 999999999986 456669999999998 4899999999999
Q ss_pred HhhhccccC-CCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCc
Q 004263 564 ILNWSFVRN-DQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTT 642 (765)
Q Consensus 564 ll~~s~~~~-~~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~ 642 (765)
|+.|++... +.++.+++.+|+.+|++++++|+++||++||||||+|..+.+ .+..+++.++|+.+.++++ +.
T Consensus 160 ~~~ls~~~~~Y~~~~el~~dla~~y~~el~~L~~aG~~~IQiDEP~l~~~~~------~~~~~~~~~~~~~l~~~~~-~~ 232 (360)
T cd03312 160 FLKLSKAKGGGFDRLSLLDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLP------EEWLAAFKRAYEELAKAAP-GL 232 (360)
T ss_pred HHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCChhhcCCC------HHHHHHHHHHHHHHhcCCC-CC
Confidence 999998765 678899999999999999999999999999999999998753 2467889999999988875 47
Q ss_pred eEEEEeccCChhHHHHHHHcCCccEEEEecCCC--ChhhHHH-hhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHH
Q 004263 643 QVHTHMCYSNFNDIIHSIMDMDADVITIENSRS--DEKLLSV-FREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKML 719 (765)
Q Consensus 643 ~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~--~~~~L~~-~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~ 719 (765)
++++|+|||+.+++++.+.++++|+|++|..++ +++.|.. +.. ++.|++||||+||+|+++++++.++|+++.
T Consensus 233 ~l~l~tyfg~~~~~~~~l~~l~Vd~l~le~~~~~~~l~~l~~~~~~----~k~l~lGvId~rn~~~ed~e~i~~~i~~a~ 308 (360)
T cd03312 233 KLLLATYFGSLGENLDLLASLPVDGLHLDLVRGPENLEAVLKAGFA----DKVLSAGVVDGRNIWRADLAASLALLETLA 308 (360)
T ss_pred cEEEEecccchHHHHHHHHcCCCCEEEEEecCCcccHHHHHhcCCC----CCEEEEEEEcCCCCCcCCHHHHHHHHHHHH
Confidence 899999999999999999999999999995543 4455443 221 578999999999999999999999999999
Q ss_pred hhcCCCcEEEcCCCCCCCCChhhH
Q 004263 720 AVLESNILWVNPDCGLKTRKYSEV 743 (765)
Q Consensus 720 ~~i~~~~l~vsPdCGL~~~~~~~~ 743 (765)
+++ .+++||||||||.+++++..
T Consensus 309 ~~v-~~~l~lsp~CgL~~lP~~~~ 331 (360)
T cd03312 309 AIL-GDRLVVSPSCSLLHVPVDLE 331 (360)
T ss_pred HHh-cCcEEEECCCCCcCCCcccc
Confidence 988 89999999999999977654
No 18
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=100.00 E-value=8.1e-52 Score=489.87 Aligned_cols=314 Identities=16% Similarity=0.202 Sum_probs=269.6
Q ss_pred ceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 004263 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (765)
Q Consensus 2 ~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~r 81 (765)
+|||++|||+ .+||+|+++||+|++|+++|++++++++.++|+.|+++|||+||||||+|||+|. +
T Consensus 424 tt~vGSfPr~---~~lk~are~~~~G~is~eel~~~~~~~i~~~i~~Qe~aGLDvi~~GEf~r~D~v~-----------~ 489 (750)
T TIGR01371 424 TTTIGSFPQT---PEVRKARAAYRKGEISEEEYEKFIKEEIKKVIKIQEELGLDVLVHGEFERNDMVE-----------Y 489 (750)
T ss_pred CcccCCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeccCCeeeecHHH-----------H
Confidence 4666679999 7799999999999999999999999999999999999999999999999999984 4
Q ss_pred ccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHcC-CCCceEeehHHH
Q 004263 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALG-METVPVLVGPVS 160 (765)
Q Consensus 82 f~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g-~~~K~vl~GP~T 160 (765)
|. ..|++||.|+||.. +.|++. +|.+|++.+++.+ ..+..++++++|++++ .++|++|+||+|
T Consensus 490 F~-----e~L~G~~~~~~G~v--------~~~g~~-~v~~P~i~g~v~~--~~~~~v~~~~~aq~lt~~~vK~~LtGPvT 553 (750)
T TIGR01371 490 FG-----EKLAGFAFTQNGWV--------QSYGSR-CVRPPIIYGDVSR--PKPMTVKWSVYAQSLTSKPVKGMLTGPVT 553 (750)
T ss_pred Hh-----hcCCcEEEecCcce--------eecCCc-CCCCCEEeCCCCC--CCCCchHHHHHHHhccCCCCceEEechHH
Confidence 43 25788998888831 223333 4789999998643 3455699999999996 899999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCC---hHHHHHHHHHHHHHHc---cCC
Q 004263 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD---SHKLQAFSDAYSELQS---SLS 234 (765)
Q Consensus 161 ~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~---~~~~~~~~~~y~~l~~---~~~ 234 (765)
|+.||+. ..| .++.+++++|+++|++++++|+++||+|||||||+|+.+++ .++.+.+..+|+.+.. +++
T Consensus 554 ~l~~s~~-r~d---~~~~~~~~~la~a~~~ev~~L~~aG~~~IQIDEPaL~~~l~~~~~~~~~~l~~a~~~~~~~~~~v~ 629 (750)
T TIGR01371 554 ILNWSFV-RDD---IPRKEIAYQIALAIRDEVLDLEEAGIKIIQIDEPALREGLPLRKSDWPEYLDWAVEAFRLATSGVK 629 (750)
T ss_pred HHhhhhh-ccC---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhhhcCCccchhHHHHHHHHHHHHHHHHhCCC
Confidence 9999985 333 48999999999999999999999999999999999998876 5567777788777754 333
Q ss_pred -CCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCC-CChhhHhh--hCCCCCEEEEEEeeCCCCCcCCHHHHHHHH
Q 004263 235 -GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGT-KTLDLIKT--EFPLGKYLFAGVVDGRNIWANDLASSLTTL 310 (765)
Q Consensus 235 -~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~-~~l~~l~~--~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l 310 (765)
..+|++|+|||++ +++++.|.++| ||+|++|++++. +.++.+.. .+| +.|++||||+||+|++|+++++++|
T Consensus 630 ~~~~I~~H~C~g~~-~~i~~~l~~l~-vD~i~lE~~r~~~e~L~~~~~~~~~~--~~ig~GVvD~~s~~ve~~eei~~~i 705 (750)
T TIGR01371 630 DETQIHTHMCYSEF-NEIIESIADLD-ADVISIEASRSDMELLSAFKNGFGYP--NGIGPGVYDIHSPRVPSVEEMADLI 705 (750)
T ss_pred CCCEEEEEEECCCc-HHHHHHHHhCC-CCEEEEEecCCChhHHHHhhhhcccC--CeEEEEEEeCCCCCcCCHHHHHHHH
Confidence 3689999999999 89999999999 999999999864 45665543 243 5699999999999999999999999
Q ss_pred HHHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHcc
Q 004263 311 QDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (765)
Q Consensus 311 ~~~~~~~~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~ 369 (765)
+++.++++++||||||||||...+++ -|.+||..|+..++.++
T Consensus 706 ~~a~~~i~~erl~vsPdCGL~tr~~~----------------~~~~~L~~mv~aa~~~r 748 (750)
T TIGR01371 706 EKALQVLPAERLWVNPDCGLKTRNWE----------------EVIASLKNMVEAAKEAR 748 (750)
T ss_pred HHHHHhcCcceEEEeCCCCCCcCCHH----------------HHHHHHHHHHHHHHHHh
Confidence 99999998899999999999988776 39999999999998775
No 19
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=100.00 E-value=1.7e-50 Score=479.10 Aligned_cols=312 Identities=21% Similarity=0.254 Sum_probs=272.1
Q ss_pred cceecccCCC---cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeE-
Q 004263 433 PTTTIGSFPQ---TMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFA- 508 (765)
Q Consensus 433 ~tt~iGSfPr---~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~- 508 (765)
.|+++| ||| ++|||+|+++||+|+||.++|.++.+++++++|+.|+++|||+||+|||+|+|+|++|+..|+|+-
T Consensus 3 ~~~~lG-yPRiG~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~~Gld~it~Gdfs~yd~vLD~~~~lg~ip~ 81 (758)
T PRK05222 3 KTHILG-FPRIGPRRELKKALESYWAGKISEEELLATARELRARHWQRQKEAGLDLIPVGDFSYYDHVLDTAVLLGAIPE 81 (758)
T ss_pred ccccCC-CCCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEeccCCcccHHHHHHHHHHhCCCch
Confidence 456667 999 699999999999999999999999999999999999999999999999999999999998877663
Q ss_pred --------------Ee---------ccceeeecCCce-eeCcEEEccCCC--CcccchhHHHHHHhccCCCceEeeechh
Q 004263 509 --------------FT---------VNGWVQSYGSRC-VKPPIIYGDVSR--PKAMTVFWSSMAQSMTKRPMKGMLTGPV 562 (765)
Q Consensus 509 --------------~~---------~~g~~~~~~t~~-~~~P~i~g~i~~--~~p~~~~~~~~a~~~t~~~vK~~ltGPv 562 (765)
|. ..+|++||+||| |++|+|+|++++ ..+..++++++++++ +.++|++|+||+
T Consensus 82 rf~~~~~~~~~~~yF~~arg~~~~~~~emtKwF~tNYhY~VPei~g~~~~~~~~~~~l~e~~~ak~~-g~~~K~vl~GP~ 160 (758)
T PRK05222 82 RFGNLGGSVDLDTYFAMARGGKDVAALEMTKWFNTNYHYIVPEFDPDTQFKLTSNKLLDEFEEAKAL-GINTKPVLLGPV 160 (758)
T ss_pred hhccccCCCccccceecccCCCCcccccceEEecCCCceeCcEEcCCcccccCCCcHHHHHHHHHhC-CCCceEEEccHH
Confidence 11 356899999998 999999999875 345569999999998 789999999999
Q ss_pred HHhhhccc-cCCCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCC
Q 004263 563 TILNWSFV-RNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDT 641 (765)
Q Consensus 563 Tll~~s~~-~~~~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~ 641 (765)
||+.|++. ..+.++.+++.+|+.+|++++++|.++||++||||||+|...++ ...++++.++|+.+....+ .
T Consensus 161 T~l~ls~~~~~~~~~~ell~dl~~~y~~~l~~L~~aG~~~IQiDEP~l~~~~~------~~~~~~~~~~y~~l~~~~~-~ 233 (758)
T PRK05222 161 TFLWLSKSKGEGFDRLDLLDDLLPVYAELLAELAAAGAEWVQIDEPALVLDLP------QEWLEAFKRAYEALAAAKP-R 233 (758)
T ss_pred HHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCchhhcCCC------HHHHHHHHHHHHHHhcCCC-C
Confidence 99998885 44567899999999999999999999999999999999998753 2356788899999887554 3
Q ss_pred ceEEEEeccCChhHHHHHHHcCCccEEEEecCC--CChhhHHH-hhhcccCCceeccccccCCCCCCCCHHHHHHHHHHH
Q 004263 642 TQVHTHMCYSNFNDIIHSIMDMDADVITIENSR--SDEKLLSV-FREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKM 718 (765)
Q Consensus 642 ~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r--~~~~~L~~-~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a 718 (765)
.++++|+|||+++++++.+.++++|+|++|..+ ++++.|.. |+. ++.|++||||+||+|+++++++.++|+++
T Consensus 234 ~~i~l~tyfg~~~~~~~~l~~l~Vd~l~LD~~~~~~~l~~l~~~~p~----~k~l~lGVId~rn~~~ed~e~v~~ri~~a 309 (758)
T PRK05222 234 PKLLLATYFGSLNDALDLLASLPVDGLHLDLVRGPEQLAALLKYFPA----DKVLSAGVIDGRNIWRADLEAALALLEPL 309 (758)
T ss_pred CCEEEEeeccchhhHHHHHHcCCCCEEEEEeeCCccchHHHHhhcCC----CCEEEEEEEcCCCCCcCCHHHHHHHHHHH
Confidence 589999999999989999999999999999543 35666655 343 68899999999999999999999999999
Q ss_pred HhhcCCCcEEEcCCCCCCCCChhh----------------HHHHHHHHHHHHHHHHH
Q 004263 719 LAVLESNILWVNPDCGLKTRKYSE----------------VKPALSNMVAAAKLLRT 759 (765)
Q Consensus 719 ~~~i~~~~l~vsPdCGL~~~~~~~----------------~~~kL~~mv~aa~~~r~ 759 (765)
.+++ +++||||||||.|.+... |.+||+.++..++.+..
T Consensus 310 ~~~v--e~L~lspsCgL~~vP~~~~~E~~l~~~~~~~~afa~~k~~e~~~l~~~~~~ 364 (758)
T PRK05222 310 AAKV--DRLWVAPSCSLLHVPVDLDAETKLDPELKSWLAFAKQKLEELALLARALNG 364 (758)
T ss_pred HHhh--ccEEEeCCCCCcCCCccccccccCCHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 9987 999999999999996632 67888888888777643
No 20
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=100.00 E-value=1.1e-49 Score=469.30 Aligned_cols=314 Identities=17% Similarity=0.169 Sum_probs=268.9
Q ss_pred ceecccCCC---cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHH---------
Q 004263 434 TTTIGSFPQ---TMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFG--------- 501 (765)
Q Consensus 434 tt~iGSfPr---~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~--------- 501 (765)
|||+.+||| .+|||+|+++||+|++|.++|.++.+++++.+|+.|+++|||+|++|||+|+|+|++|+
T Consensus 2 ~~~~lGyPRig~~ReLKka~e~yw~G~is~eeL~~~~~~~~~~~~~~Q~~aGld~ItdGdfsryD~vLD~~~m~g~ip~r 81 (766)
T PLN02475 2 ASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVAADLRSSIWKQMSAAGIKYIPSNTFSYYDQVLDTTAMLGAVPPR 81 (766)
T ss_pred CccccCCCCCCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccCCcchhHHHHhHHHHhccchhh
Confidence 344444999 79999999999999999999999999999999999999999999999999999998887
Q ss_pred -hccCC---e---EEe--------ccceeeecCCce-eeCcEEEccCCC--CcccchhHHHHHHhccCCCceEeeechhH
Q 004263 502 -EQLSG---F---AFT--------VNGWVQSYGSRC-VKPPIIYGDVSR--PKAMTVFWSSMAQSMTKRPMKGMLTGPVT 563 (765)
Q Consensus 502 -~~l~G---~---~~~--------~~g~~~~~~t~~-~~~P~i~g~i~~--~~p~~~~~~~~a~~~t~~~vK~~ltGPvT 563 (765)
..++| + +.+ +.+|++|||||| |++|++.|++.+ ..+..++++.+|+++ +...|++|+||+|
T Consensus 82 ~~~~~g~~~l~~yfamaRG~~~~~a~emtKwFdtNYHY~VPe~~~~~~f~~~~~~~l~e~~eA~~~-g~~~kpVl~GP~T 160 (766)
T PLN02475 82 YGWTGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVKFSYASHKAVNEYKEAKAL-GVDTVPVLVGPVS 160 (766)
T ss_pred hhccCCcchHHHHHHHhcCCcccccccceEEecCCcceECcEECCCCccccCccchHHHHHHHHHc-CCCCCcEEECHHH
Confidence 33434 1 112 244899999999 999999999873 456679999999987 4557888999999
Q ss_pred HhhhccccC--C--CCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCC
Q 004263 564 ILNWSFVRN--D--QPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQ 639 (765)
Q Consensus 564 ll~~s~~~~--~--~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~ 639 (765)
++.||+... + .++.+++.+|+.+|++++++|.++|+.+||||||+|..+++ .+.++++.++|+.+.++++
T Consensus 161 ~l~Lsk~~~~~~~~~~~~~ll~~L~~~y~~~l~~L~~~Gv~~IQiDEP~L~~d~~------~~~~~~~~~ay~~l~~~~~ 234 (766)
T PLN02475 161 YLLLSKPAKGVDKSFDLLSLLDKILPVYKEVIAELKAAGASWIQFDEPALVMDLE------SHKLQAFKTAYAELESTLS 234 (766)
T ss_pred HHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhcCCC------HHHHHHHHHHHHHHHhccC
Confidence 999999653 2 45889999999999999999999999999999999998753 2567899999999998876
Q ss_pred CCceEEEEeccCChh-HHHHHHHcCC-ccEEEEecCCCChhhHHHhhhcccC--CceeccccccCCCCCCCCHHHHHHHH
Q 004263 640 DTTQVHTHMCYSNFN-DIIHSIMDMD-ADVITIENSRSDEKLLSVFREGVKY--RAGIGPGVYDIHSPRIPSTEEIADRI 715 (765)
Q Consensus 640 ~~~~I~~H~C~g~~~-~i~~~l~~l~-~D~isiE~~r~~~~~L~~~~~~~~~--~~~l~~GVvd~~s~~ve~~eev~~~i 715 (765)
+.+|++|+|||+++ ++++.+.+++ +|+|++|..+++ +.|..+.+ +++ ++.|++||||+||+|+++++++.++|
T Consensus 235 -~~~i~l~TyFg~~~~~~~~~l~~lp~Vd~l~lD~v~~~-~~L~~l~~-~~~p~~k~L~~GVVDgRNiw~~dl~~~~~~i 311 (766)
T PLN02475 235 -GLNVLVETYFADVPAEAYKTLTSLKGVTAFGFDLVRGT-KTLDLIKK-AGFPSGKYLFAGVVDGRNIWANDLAASLATL 311 (766)
T ss_pred -CCeEEEEccCCCCCHHHHHHHHcCCCCCEEEEEecCCh-hhHHHHHh-ccCCCCCeEEEEEEeCCCcccCCHHHHHHHH
Confidence 47999999999999 6999999999 999999976653 45666644 333 68899999999999999999999999
Q ss_pred HHHHhhcCCCcEEEcCCCCCCCCChhh----------------HHHHHHHHHHHHHHH
Q 004263 716 NKMLAVLESNILWVNPDCGLKTRKYSE----------------VKPALSNMVAAAKLL 757 (765)
Q Consensus 716 ~~a~~~i~~~~l~vsPdCGL~~~~~~~----------------~~~kL~~mv~aa~~~ 757 (765)
+++.+.++++++||+|||||.|++.+- |.+||..++..++.+
T Consensus 312 ~~~~~~~~~~~l~v~psCsLlhvP~~~~~e~~l~~~~~~~~afa~~k~~e~~~l~~~~ 369 (766)
T PLN02475 312 QALEGIVGKDKLVVSTSCSLLHTAVDLVNETKLDKELKSWLAFAAQKVVEVVALAKAL 369 (766)
T ss_pred HHHHHhcCCCcEEEeCCCCCccCCccccccccCCHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 999998988999999999999985532 667888777776665
No 21
>PRK00957 methionine synthase; Provisional
Probab=100.00 E-value=1.1e-49 Score=430.60 Aligned_cols=295 Identities=31% Similarity=0.457 Sum_probs=253.1
Q ss_pred ccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeEEec
Q 004263 432 LPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTV 511 (765)
Q Consensus 432 ~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~~ 511 (765)
||||.|||||+|+++.+.. +..-.+.+.+++.++++|+++|+.|+++|||+|||||| |.||+.+|.+.|+||.
T Consensus 2 ~~t~~vgs~p~~~~~~~~~---~~~~~~~~~~~~~~~~ai~~~v~~q~~~Gld~vtdGe~-r~~~~~~f~~~l~G~~--- 74 (305)
T PRK00957 2 MITTVVGSYPVVKGEPETL---KDKIKGFFGLYDPYKPAIEEAVADQVKAGIDIISDGQV-RGDMVEIFASNMPGFD--- 74 (305)
T ss_pred CCcceecCCCCCccchhHH---HHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCc-cCchHHHHHhcCCCcc---
Confidence 7999999999999965443 33336778899999999999999999999999999999 6889999999999984
Q ss_pred cceeeecCCceeeCcEEEccCCCC-cccchhHHHHHHhccC-----CCceEeeechhHHhhhccccC-CCC--HHHHHHH
Q 004263 512 NGWVQSYGSRCVKPPIIYGDVSRP-KAMTVFWSSMAQSMTK-----RPMKGMLTGPVTILNWSFVRN-DQP--RFETCYQ 582 (765)
Q Consensus 512 ~g~~~~~~t~~~~~P~i~g~i~~~-~p~~~~~~~~a~~~t~-----~~vK~~ltGPvTll~~s~~~~-~~~--~~e~~~~ 582 (765)
| |.++|+|+++ +++++++++|+++.+. .++|++|+||+|++.+++... +.+ +.+++.+
T Consensus 75 -------~------~~vvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vK~~i~GP~Tla~~~~~~~~y~~~~~~~~~~d 141 (305)
T PRK00957 75 -------G------KRVIGRVEPPAKPITLKDLKYAKKVAKKKDPNKGVKGIITGPSTLAYSLRVEPFYSDNKDEELIYD 141 (305)
T ss_pred -------C------CeEEEeecCCCCCCcHHHHHHHHHHHhccCCCCceeEEecCHHHHHhhcccccccCCccHHHHHHH
Confidence 1 3456999986 5777999999998863 489999999999999988642 233 3789999
Q ss_pred HHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHc
Q 004263 583 IALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMD 662 (765)
Q Consensus 583 la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~ 662 (765)
++.+|++++++|.++||++||||||++..++. + .+++.++++.+.++++ ..+++|+| |+++++++.|.+
T Consensus 142 la~~~~~~i~~l~~~G~~~IqiDEP~l~~~~~----~----~~~~~~~~~~~~~~i~--~~v~lH~C-G~~~~i~~~l~~ 210 (305)
T PRK00957 142 LARALRKEAEALEKAGVAMIQIDEPILSTGAY----D----LEVAKKAIDIITKGLN--VPVAMHVC-GDVSNIIDDLLK 210 (305)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecChhhhcCCc----h----HHHHHHHHHHHHHhhC--CceEEEEC-CCcHHHHHHHHh
Confidence 99999999999999999999999999997642 1 3477888888888874 67899999 999999999999
Q ss_pred CCccEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhh
Q 004263 663 MDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSE 742 (765)
Q Consensus 663 l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~ 742 (765)
+++|+|++|.+++ .+.|+.+++....++.+++||||+++++++++|+++++|++++++++++++||||+|||.+.+++.
T Consensus 211 ~~vd~i~ld~~~~-~~~l~~l~~~~~~~k~l~~GvId~~~~~~e~~e~v~~~i~~~~~~~~~~~l~lsp~CGl~~~~~~~ 289 (305)
T PRK00957 211 FNVDILDHEFASN-KKNLEILEEKDLIGKKIGFGCVDTKSKSVESVDEIKALIEEGIEILGAENILIDPDCGMRMLPRDV 289 (305)
T ss_pred CCCCEEEEeecCC-CCCHHHHhhhccCCCEEEEEEEcCCCCCCCCHHHHHHHHHHHHHhcCHHHEEECCCcCCCcCCHHH
Confidence 9999999996543 234444442012367899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 004263 743 VKPALSNMVAAAKLLR 758 (765)
Q Consensus 743 ~~~kL~~mv~aa~~~r 758 (765)
+++||++|+++|+.+|
T Consensus 290 ~~~kL~~l~~aa~~~~ 305 (305)
T PRK00957 290 AFEKLKNMVEAAREIR 305 (305)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999875
No 22
>PRK04326 methionine synthase; Provisional
Probab=100.00 E-value=6.3e-49 Score=429.27 Aligned_cols=309 Identities=21% Similarity=0.308 Sum_probs=269.1
Q ss_pred ceeccc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 004263 2 ASHVVG-YPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (765)
Q Consensus 2 ~t~~~G-~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~ 80 (765)
.||++| |||+ ++||+|+++||+|+++.++|.+..+++++.+|+.|+++|+|+||||||||.|.+
T Consensus 10 ~~t~vGS~Prp---~~l~~a~~~~~~g~~~~~~l~~~~~~a~~~~v~~q~~~Gld~itdGe~~r~~~~------------ 74 (330)
T PRK04326 10 PTTVVGSYPKP---KWLREAIRLHKAGKISEEDLHEAFDDAVRLVVKDHERAGVDIPVDGEMRREEMV------------ 74 (330)
T ss_pred cCccccCCCCC---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCeEEcHhHH------------
Confidence 467777 9999 889999999999999999999999999999999999999999999999996643
Q ss_pred cccCCCCCccchhhhhhcc-CCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHc--CCCCceEeeh
Q 004263 81 RYSWNGGEIGFDVYFSMAR-GNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL--GMETVPVLVG 157 (765)
Q Consensus 81 rf~~~~~~~~l~~yFa~ar-G~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~--g~~~K~vl~G 157 (765)
.||++++ |.. ...-+||||||| |++|++.++ ++...+.++++++++++. +.++|++|+|
T Consensus 75 ------------~~f~~~~~G~~---~~~~~~~~~~~~-~~~P~v~g~--~~~~~~~~l~~~~~~~~~~~~~~vk~~l~G 136 (330)
T PRK04326 75 ------------EYFAERIEGFK---FYGPVRVWGNNY-FRKPSVVGK--IEYKEPMLVDEFEFAKSVTYTRPVKVPITG 136 (330)
T ss_pred ------------HHHHHhCCcee---ccCceecccccc-ccCCeEEEe--ccCCCCCcHHHHHHHHhcccCCCceEeccC
Confidence 4666665 521 234578999999 999999985 455568899999999987 7899999999
Q ss_pred HHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCc
Q 004263 158 PVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLN 237 (765)
Q Consensus 158 P~T~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~ 237 (765)
|+|++.++.. ..|. +..+++.+|+++|++++++|.++||++||||||+|+.. .++.+.+..+|+.+.++.. ..
T Consensus 137 P~Tla~~~~~-~~y~---~~~e~~~~l~~~~~~~i~~l~~~G~~~iqidEP~l~~~--~~~~~~~~~~l~~~~~~~~-~~ 209 (330)
T PRK04326 137 PYTIAEWSFN-EYYK---DKEELVFDLAKVINEEIKNLVEAGAKYIQIDEPALATH--PEDVEIAVEALNRIVKGIN-AK 209 (330)
T ss_pred HHHHHhhccc-ccCC---CHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCchhhcC--HHHHHHHHHHHHHHHhCCC-CE
Confidence 9999987764 5664 67899999999999999999999999999999999974 3556888899998887653 57
Q ss_pred EEEEeccCCCchhhHHHHhcCCCccEEEEEeccC-CCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhh
Q 004263 238 VLIETYFADVPAETYKILTSLKGVTGFGFDLIRG-TKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGT 316 (765)
Q Consensus 238 i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~-~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~ 316 (765)
+.||+|||++ .++++.+.+++ ||+|++|++++ .++++.+.+ .+.+|.+++||||++|+|+++++++.++++++.+.
T Consensus 210 v~lH~C~G~~-~~~~~~l~~~~-vd~i~~d~~~~~~~~l~~~~~-~~~~~~l~~Gvv~~~~~~~~~~e~v~~~v~~~~~~ 286 (330)
T PRK04326 210 LGLHVCYGDY-SRIAPYILEFP-VDQFDLEFANGNYKLLDLLKE-YGFDKELGLGVIDVHSARVESVEEIKEAIKKGLEY 286 (330)
T ss_pred EEEEEeCCCc-HHHHHHHHhCC-CCEEEEEeCCCCchhHHHhhc-cCCCCeEEeEEEeCCCCCCCCHHHHHHHHHHHHHh
Confidence 8999999999 88999999999 99999999874 356776654 22378999999999999999999999999999998
Q ss_pred cCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHcc
Q 004263 317 VGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (765)
Q Consensus 317 ~~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~ 369 (765)
++.++++|||||||.|+|++ -|.+||+-|+..++.++
T Consensus 287 ~~~~~~~lsp~Cgl~~~~~~----------------~a~~kl~~l~~~a~~~~ 323 (330)
T PRK04326 287 VPPEKLYINPDCGLKLLPRE----------------IAYQKLVNMVKATREVR 323 (330)
T ss_pred CChhhEEECCCCCCCcCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 88899999999999999986 49999999999988765
No 23
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=9.3e-49 Score=426.82 Aligned_cols=313 Identities=19% Similarity=0.156 Sum_probs=269.4
Q ss_pred ceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 004263 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (765)
Q Consensus 2 ~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~r 81 (765)
|||+++|||+ ++|+++++.|-+|+++.++|+++.++++++.++.|+++|||+||||||+|-|++.++...++++-
T Consensus 5 tt~VGS~prp---~~l~~~~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldiitDGE~rR~~~~~~f~~~l~G~~-- 79 (339)
T PRK09121 5 TSTAGSLPKP---SWLAEPETLWSPWKLQGEELIEGKQDALRLSLQEQEDAGIDIVSDGEQTRQHFVTTFIEHLSGVD-- 79 (339)
T ss_pred CceecCCCCC---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceeCCccccchHHHHHHHhCCCce--
Confidence 4566669999 99999999999999999999999999999999999999999999999999999999888777762
Q ss_pred ccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHc-CCCCceEeehHHH
Q 004263 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (765)
Q Consensus 82 f~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~-g~~~K~vl~GP~T 160 (765)
+. .+ ..+ +++ +||+|..|.++|+..+ ..+..+++|++++++ +.++|.+||||+|
T Consensus 80 ~~--------------~~-------~~~-~~~-~~~~~~~p~v~G~i~~--~~~~~~~~~~~~~~~~~~~vK~~ipgP~t 134 (339)
T PRK09121 80 FE--------------KR-------ETV-RIR-DRYDASVPTVVGAVSR--QKPVFVEDAKFLRQQTTQPIKWALPGPMT 134 (339)
T ss_pred ee--------------cC-------Ccc-eec-ccccCCCCEEEEecCC--CCCCcHHHHHHHHhccCCCceEEeCcHHH
Confidence 00 01 111 455 8888999999997654 457788999999987 5679999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEE
Q 004263 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240 (765)
Q Consensus 161 ~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l 240 (765)
++.++.+ ++|+ +.++++.+|+.+|++++++|+++||++||||||+|.+. ..+..+.+.++++...++.+ ..+.+
T Consensus 135 l~~~~~~-~~Y~---~~~el~~dlA~al~~Ei~~L~~aG~~~IQiDeP~l~~~-~~~~~~~~v~~~n~~~~g~~-~~v~~ 208 (339)
T PRK09121 135 MIDTLYD-DHYK---SREKLAWEFAKILNQEAKELEAAGVDIIQFDEPAFNVF-FDEVNDWGVAALERAIEGLK-CETAV 208 (339)
T ss_pred HHHHhcc-ccCC---CHHHHHHHHHHHHHHHHHHHHHCCCCEEEecccHHhhh-hHHHHHHHHHHHHHHHcCCC-CceEE
Confidence 9988876 6785 88999999999999999999999999999999999963 33347777788888877765 57888
Q ss_pred EeccCCCc-----------------hhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCH
Q 004263 241 ETYFADVP-----------------AETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDL 303 (765)
Q Consensus 241 ~tyfg~~~-----------------~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~ 303 (765)
|+|||+.. .++++.|.+++ ||+|+|||++...+++++.. + ++|.|++||||+||..+|++
T Consensus 209 HvC~G~~~~~~~~~~~~~~~~~g~y~~i~~~l~~~~-vd~~~lE~~~~r~~~~~l~~-~-~~~~v~lGvvd~k~~~lE~~ 285 (339)
T PRK09121 209 HICYGYGIKANTDWKKTLGSEWRQYEEAFPKLQKSN-IDIISLECHNSRVPMDLLEL-I-RGKKVMVGAIDVASDTIETP 285 (339)
T ss_pred EEeCCCCCCCccccccccccccccHHHHHHHHHhCC-CCEEEEEecCCCCCcHHHHh-c-ccCeEEeeeEeCCCCCCCCH
Confidence 99988430 47889999999 99999999986657777663 5 57899999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHcc
Q 004263 304 ASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (765)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~ 369 (765)
+++++||+++++++|+++|||||||||..+|.+ -|.+||+.|+..++.++
T Consensus 286 e~I~~rI~~a~~~v~~~~l~lspdCGf~~l~~~----------------~a~~KL~~l~~~a~~~~ 335 (339)
T PRK09121 286 EEVADTLRKALQFVDADKLYPCTNCGMAPLSRD----------------VARGKLNALSAGAEIVR 335 (339)
T ss_pred HHHHHHHHHHHHhCCHHHEEECCCCCCCcCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988776 59999999999887654
No 24
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=100.00 E-value=2.4e-47 Score=415.34 Aligned_cols=307 Identities=20% Similarity=0.234 Sum_probs=254.7
Q ss_pred CceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 004263 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (765)
Q Consensus 1 ~~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~ 80 (765)
++|++++|||+ .++++|++.||+|+++.+++++..++++.++|+.|+++|+|+|||||| ||+|+|++..++..|+
T Consensus 1 ~~t~vGS~P~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~gl~~i~dge~--~~~~~~~~~~~~~~~~ 75 (321)
T cd03310 1 LATGIGSYPLP---DGVTKEWSILEKGAIEPEWPEEALFTALGSFFELQLEAGVEVPTYGQL--GDDMIGRFLEVLVDLE 75 (321)
T ss_pred CCCcccCCCCc---hhHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhhcCCcCCCccc--HHHHHhhHHHHHHHhh
Confidence 35777779999 999999999999999999999999999999999999999999999999 7999998887776654
Q ss_pred cccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHcCCCCceEeehHHH
Q 004263 81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVS 160 (765)
Q Consensus 81 rf~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T 160 (765)
|| +|||+|||||++|++.++. +.......++++++++..+.++|++|+||+|
T Consensus 76 ~~---------------------------~~~~~~n~~y~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~vk~~l~GP~T 127 (321)
T cd03310 76 TG---------------------------TRFFDNNFFYRPPEAKIEA-FLPLELDYLEEVAEAYKEALKVKVVVTGPLT 127 (321)
T ss_pred cc---------------------------cccccccceeccchhcccc-cccccHHHHHHHHHhcCCCCceEEEecCHHh
Confidence 31 7999999999999998876 5444445566666665556789999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCC--hHHHHHHHHHHHHHHccCCCCcE
Q 004263 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD--SHKLQAFSDAYSELQSSLSGLNV 238 (765)
Q Consensus 161 ~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~--~~~~~~~~~~y~~l~~~~~~~~i 238 (765)
++.+++...+|+ .+..+++++++++|++++++|.++||.|||||||+|+.++. +.+.+.+.++|+.+..+.. ..+
T Consensus 128 la~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~l~~~G~~~iqidEP~l~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~ 204 (321)
T cd03310 128 LALLAFLPNGEP--DAYEDLAKSLAEFLREQVKELKNRGIVVVQIDEPSLGAVGAGAFEDLEIVDAALEEVSLKSG-GDV 204 (321)
T ss_pred HhHhhccccCCc--hHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccccccccccchHHHHHHHHHHHhhccC-Cce
Confidence 999888533332 36789999999999999999999999999999999999875 5678999999999865221 234
Q ss_pred EEEeccCCCchhhHHHHhcCCCccEEEEEeccCC----CChhhHhh-hCCCCCEEEEEEeeC----CCCCcC--CHHHHH
Q 004263 239 LIETYFADVPAETYKILTSLKGVTGFGFDLIRGT----KTLDLIKT-EFPLGKYLFAGVVDG----RNIWAN--DLASSL 307 (765)
Q Consensus 239 ~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~----~~l~~l~~-~~p~~k~l~lGvVdg----rn~~~e--d~~~~~ 307 (765)
.+|+|++. +++.+.+++ ||+|++|++++. ++++.+.+ ++ .++.+++|+||+ ||+|++ +++++.
T Consensus 205 ~lHic~~~----~~~~l~~~~-vd~l~~D~~~~~~~~~~~l~~~~~~g~-~~~~lg~gvid~~~~~~~~~~~~~~~~~~~ 278 (321)
T cd03310 205 EVHLCAPL----DYEALLELG-VDVIGFDAAALPSKYLEDLKKLLRIGV-RTLILGLVVTDNEAKGRNAWKEIERLEKLV 278 (321)
T ss_pred EEEECCCC----CHHHHHhCC-CCEEEEecccCcccchhHHHHHHhcCC-ceEEEEeeecCCcccCCCHHHHHHHHHHHH
Confidence 56666552 478899999 999999999864 67777754 23 578899999999 999998 666666
Q ss_pred HHHHHHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHH
Q 004263 308 TTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAK 366 (765)
Q Consensus 308 ~~l~~~~~~~~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~ 366 (765)
++++.....+ .++++|+|||||.|+|++ .|.+||+.|+.+++
T Consensus 279 ~~l~~~~~~~-~~~~~vtpscgL~~~p~~----------------~a~~kl~~l~~~a~ 320 (321)
T cd03310 279 RRLEEPGEVL-DEILYLTPDCGLAFLPPQ----------------EARRKLALLAEAAR 320 (321)
T ss_pred HHhccchhhh-hhceeeCCCccCCCCCHH----------------HHHHHHHHHHHHhh
Confidence 6665543323 378999999999999998 49999999998874
No 25
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=4.5e-47 Score=400.58 Aligned_cols=292 Identities=17% Similarity=0.268 Sum_probs=240.8
Q ss_pred ccceecccCCCcHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeE
Q 004263 432 LPTTTIGSFPQTMDLRRVRREFK---AKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFA 508 (765)
Q Consensus 432 ~~tt~iGSfPr~~elr~a~~~~~---~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~ 508 (765)
+.+|++||||+|.++++ +.++ .|+++.+++.+ .+++++..|.++|+|++|+|+|+ ||+.+|.+.++|=.
T Consensus 4 iv~~~iGsyP~P~~~~k--~~~~~~~~g~~~~e~l~~----~~~~~~~~q~dAGld~~Tdgqlr--Dm~~~fl~~i~~~~ 75 (344)
T PRK06052 4 IIFDDIGSFPLPEGVTR--EWVENAFETREEDEKLFS----VVRSAFQMKIDAGVQVPTYPQFR--DMIEQFLDIIRDEK 75 (344)
T ss_pred EEeccCCCCCCCccccH--HHHhhhhcCCCcHHHHHH----HHHHHHHHHHhcCCccccchHHH--HHHHhHHHHHcCCc
Confidence 45799999999999988 6665 58999998888 88999999999999999999999 99999999887732
Q ss_pred EeccceeeecCCceeeCcEEEccCCCCcccchhHHHHH----HhccC--CCceEeeechhHHhhhcccc-CCCC-HHHHH
Q 004263 509 FTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMA----QSMTK--RPMKGMLTGPVTILNWSFVR-NDQP-RFETC 580 (765)
Q Consensus 509 ~~~~g~~~~~~t~~~~~P~i~g~i~~~~p~~~~~~~~a----~~~t~--~~vK~~ltGPvTll~~s~~~-~~~~-~~e~~ 580 (765)
+|+.|=.+.-+ ...-.-++.+..+ +..|+ ++||+++|||+||+.|+|+. .+.+ +.+++
T Consensus 76 ------------~~~~p~~~~~~--~a~i~el~~~~~~~~~~~~~~~~~~~VKv~iTGP~tL~~~~f~~~~Y~d~~~~la 141 (344)
T PRK06052 76 ------------CCEEPYVVKEE--CAKILELEAIEEVAKEYKEETGETLEVRVCVTGPTELYLQEFGGTIYTDILLILA 141 (344)
T ss_pred ------------ccCCCeeeehh--hhhHHHHHHHHHHHHHHHHhhCCCCCeEEEecCHHHHHHHHcCCccccchHHHHH
Confidence 23333233211 0011112222221 22343 47999999999999999987 5666 79999
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHH-----HccCCCCceEEEEeccCChhH
Q 004263 581 YQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRIT-----NCGVQDTTQVHTHMCYSNFND 655 (765)
Q Consensus 581 ~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~-----~~~v~~~~~I~~H~C~g~~~~ 655 (765)
.++|.+++++++.|.++|+.+||||||+|+.+.+++ -..+|+++|++.+ .+|+ +++||+|+ +
T Consensus 142 ~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~~-----~~~~~~i~Al~~a~~~a~~~gv--dv~i~lH~------~ 208 (344)
T PRK06052 142 KSVERFVENAIKSAKNFKIKTISIDEPSLGINPEIQ-----FSDDEIISALTVASTYARKQGA--DVEIHLHS------P 208 (344)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecCcccccCCccc-----cCHHHHHHHHHHHHhhhccCCc--ceEEEEeh------H
Confidence 999999999999999999999999999999886543 2568999999999 7777 58999998 4
Q ss_pred HH-HHHHcCC-ccEEEEecCCCChhhHHHhhhccc---CCceeccccccC--C------------------------CCC
Q 004263 656 II-HSIMDMD-ADVITIENSRSDEKLLSVFREGVK---YRAGIGPGVYDI--H------------------------SPR 704 (765)
Q Consensus 656 i~-~~l~~l~-~D~isiE~~r~~~~~L~~~~~~~~---~~~~l~~GVvd~--~------------------------s~~ 704 (765)
++ +.+.+++ +|+|++|+++++ +.|+.|.+ .. +++.||+||+|+ | ++.
T Consensus 209 l~~~~i~~~~~idvi~~E~A~~~-~~L~~l~~-~~~e~~dk~ig~GV~dtd~~~~~~~~~~~~~~n~~~~~~~~~~~~~~ 286 (344)
T PRK06052 209 LYYELICETPGINVIGVESAATP-SYLDLIDK-KVLEDTDTFLRVGVARTDIFSLIAILNEKYGTNAWKDKEYLQEIVTE 286 (344)
T ss_pred hhHHHHhcCCCCCEEeeeccCCh-HHHHHHhh-hhhhhcCCceEEeEEEchhhcchhhhhhhcccccccchhhccccCCC
Confidence 67 9999999 999999976654 45555544 22 689999999999 9 999
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCC-ChhhHHHHHHHHHHHHHHHHHH
Q 004263 705 IPSTEEIADRINKMLAVLESNILWVNPDCGLKTR-KYSEVKPALSNMVAAAKLLRTQ 760 (765)
Q Consensus 705 ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~-~~~~~~~kL~~mv~aa~~~r~~ 760 (765)
+|++|+|.++|+++++++|++++||||||||+++ .++.+.+||+||++|++.+|++
T Consensus 287 VEsveEI~~rI~~ale~i~~e~lwVNPDCGLK~~~e~~~A~~KL~nmv~aa~~~r~e 343 (344)
T PRK06052 287 LETPEVIKKRLEKAYSIFGDRIKYVGPDCGLGSWPSQELAFRLLENVAKAINEFRAE 343 (344)
T ss_pred CCCHHHHHHHHHHHHHhCChhhEEECCCCCCCCChhhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998 5889999999999999999964
No 26
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=4.1e-46 Score=410.33 Aligned_cols=317 Identities=13% Similarity=0.187 Sum_probs=255.5
Q ss_pred ceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 004263 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (765)
Q Consensus 2 ~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~r 81 (765)
+||+++|||+ ++|++|+++|-+|++|.++|+++.++++++.++.|+++|||+||||||++.++.+|+...++++ ++
T Consensus 10 tt~VGS~prP---~~L~~a~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldvitDGE~rR~~w~~df~~~l~Gv-~~ 85 (368)
T PRK06520 10 ADVVGSFLRP---AAIKQARQQFAAGEIDAAALRKIEDMEIRKVVEKQRACGLKVVTDGEFRRAWWHFDFFDGLQGV-ER 85 (368)
T ss_pred cceeccCCCC---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccccceeeehhhhcCCe-ee
Confidence 3566669999 9999999999999999999999999999999999999999999999998643334777766665 22
Q ss_pred ccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHc--CCCCceEeehHH
Q 004263 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL--GMETVPVLVGPV 159 (765)
Q Consensus 82 f~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~--g~~~K~vl~GP~ 159 (765)
|... .++ .++++|..|..|.++|+..+. ..++++++|++++++ +.++|.+||||+
T Consensus 86 ~~~~---------------------~g~-~f~~~~~~~~~~~v~G~I~~~-~~~~~~~~~~~l~~~~~~~~~K~~ipgP~ 142 (368)
T PRK06520 86 YEAE---------------------QGI-QFNGVQTKARGVRVTGKLDFP-DDHPMLEDFRFLKSISGDATPKMTIPSPS 142 (368)
T ss_pred eccc---------------------Cce-eecCcccccCCeEEEEEecCC-CCCchHHHHHHHHhhccCCCCCEEcCcHH
Confidence 2210 011 133445557789999986653 247789999999987 457899999999
Q ss_pred HHhhh-----ccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCC-------------hHH-HH
Q 004263 160 SYLLL-----SKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD-------------SHK-LQ 220 (765)
Q Consensus 160 T~l~l-----~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~-------------~~~-~~ 220 (765)
|++++ +.+ ++|+ +.++++.||+.+|++++++|+++||++||||||+|++-++ .+. .+
T Consensus 143 ~l~~~~~~~~~~~-~~Y~---~~~~~~~dlA~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~ 218 (368)
T PRK06520 143 VLHFRGGRKAIDA-TVYP---DLDDYFDDLAKTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELAR 218 (368)
T ss_pred HHHhhccccccch-hcCC---CHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHH
Confidence 99854 443 5775 8899999999999999999999999999999999987332 111 34
Q ss_pred HHHHHHHHHHccCC-CCcEEEEeccCCCc---------hhhHHHHh-cCCCccEEEEEeccC-CCChhhHhhhCCC-CCE
Q 004263 221 AFSDAYSELQSSLS-GLNVLIETYFADVP---------AETYKILT-SLKGVTGFGFDLIRG-TKTLDLIKTEFPL-GKY 287 (765)
Q Consensus 221 ~~~~~y~~l~~~~~-~~~i~l~tyfg~~~---------~~~~~~l~-~l~~vd~l~lD~~~~-~~~l~~l~~~~p~-~k~ 287 (765)
.+.++++...++.+ ...+.+|+|||++. +++++.|. +++ ||+++|||++. .+.+++|.. ++. +|.
T Consensus 219 ~~~~~~n~~~~~~p~d~~v~~HiC~Gn~~~~~~~~~~y~~i~~~L~~~~~-vd~~~lE~~~~r~g~~e~L~~-l~~~~k~ 296 (368)
T PRK06520 219 IYARVLNKALAGKPADLTIGLHVCRGNFRSTWISEGGYEPVAETLFGGVN-VDAFFLEYDNERAGGFEPLRF-IPPGHQQ 296 (368)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeecCCCCCccccccchhHHHHHHHhhcC-CCeEEEEeccCCCCCcchHHH-hhhcCCE
Confidence 45577777766654 34577799999851 48899864 899 99999999864 577787764 543 679
Q ss_pred EEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc------ccccccccccCCcHHHHhHHHHHHHHHHHH
Q 004263 288 LFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL------HTAVDLENETKLDQEIKSWLAFAAQKVVEV 361 (765)
Q Consensus 288 l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~------h~P~~~~~E~~l~~~~~~~lafA~qKl~el 361 (765)
|++||||++|+.+|+++++++||+++++++|++||||||||||. .+|.+ -|.+||+-|
T Consensus 297 v~lGvvd~~~~~vE~~e~I~~rI~~a~~~v~~~~l~lspdCGf~s~~~~~~l~~~----------------~~~~KL~~l 360 (368)
T PRK06520 297 VVLGLITTKNGELENADDVKARLAEAAKFVPLEQLCLSPQCGFASTEEGNSLSEE----------------QQWAKLRLV 360 (368)
T ss_pred EEeeEEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEeeCcccCCCccccCCCCCHH----------------HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 34444 599999999
Q ss_pred HHHHHH
Q 004263 362 NALAKA 367 (765)
Q Consensus 362 ~~l~~~ 367 (765)
+.+|+.
T Consensus 361 ~~~a~~ 366 (368)
T PRK06520 361 VEIANE 366 (368)
T ss_pred HHHHHH
Confidence 999865
No 27
>PRK06233 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=399.77 Aligned_cols=324 Identities=18% Similarity=0.218 Sum_probs=253.8
Q ss_pred eecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCcc
Q 004263 3 SHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRY 82 (765)
Q Consensus 3 t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~rf 82 (765)
+|+++|||+ ++|++|+++|-+|+++.++|+++.++.+++.++.|+++|||+||||||++-|+++|+...|+++-. |
T Consensus 12 ~~VGS~prP---~~L~~a~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldiitDGE~rR~~~~~~f~~~l~G~~~-~ 87 (372)
T PRK06233 12 DIVGSFLRP---ERLKEAREQFAIGEISQDQLLKIQHAEIKRLVKEQVELGLKAVTDGEFNRSWWHLDFLWGLNGVGK-Y 87 (372)
T ss_pred ceEeeCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCcCCccHHHHHHhhcCceEe-e
Confidence 456669999 999999999999999999999999999999999999999999999999987788899998888721 1
Q ss_pred cCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHc---CCCCceEeehHH
Q 004263 83 SWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL---GMETVPVLVGPV 159 (765)
Q Consensus 83 ~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~---g~~~K~vl~GP~ 159 (765)
.. ..++.+ +| .+--|..|.++|+..+. ..++++++|+++++. +.++|.+||||+
T Consensus 88 ~~-------~~~~~~-~~--------------~~~~~~~~~v~g~i~~~-~~~p~~~~~~~~~~~~~~~~~~K~tipgP~ 144 (372)
T PRK06233 88 EY-------EDSYKF-HG--------------AKTRTDNAELAGKVAFN-PDHPFFAAFKYLKSIVPEGVLPKQTIPSPS 144 (372)
T ss_pred cC-------cceeee-cC--------------CcCCCCCCEEEEeeccC-CCCchHHHHHHHHhhhcCCCceEEEecCcH
Confidence 10 000000 01 00124568888875542 246789999999987 356799999999
Q ss_pred HHhhhccC---CCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCC---h---------HHH---HH
Q 004263 160 SYLLLSKP---AKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD---S---------HKL---QA 221 (765)
Q Consensus 160 T~l~l~~~---~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~---~---------~~~---~~ 221 (765)
|++.+... .++|+ +.++++.||+.+|++++++|+++||++||||||+|++... . +.. +.
T Consensus 145 ~l~~~~~~~~~~~~Y~---~~eel~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (372)
T PRK06233 145 LLFRDNRSDNWPKFYD---SWDDYLDDLAQAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAED 221 (372)
T ss_pred HhccCcccccccccCC---CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHH
Confidence 99854321 25775 8899999999999999999999999999999999875211 0 122 33
Q ss_pred HHHHHHHHHccCC-CCcEEEEeccCCCc---------hhhHHHHhcCCCccEEEEEeccC-CCChhhHhhh--CCCCCEE
Q 004263 222 FSDAYSELQSSLS-GLNVLIETYFADVP---------AETYKILTSLKGVTGFGFDLIRG-TKTLDLIKTE--FPLGKYL 288 (765)
Q Consensus 222 ~~~~y~~l~~~~~-~~~i~l~tyfg~~~---------~~~~~~l~~l~~vd~l~lD~~~~-~~~l~~l~~~--~p~~k~l 288 (765)
+.++++...++.+ .+.|.+|.|+|++. ..+++.|.+++ ||+|+|||++. .+++++|... .|.+|.|
T Consensus 222 ~~~~~N~~~~~~p~d~~i~~H~C~Gn~~~~~~~~g~y~~i~~~l~~~~-vd~~~lE~~~~r~~~~~~L~~~~~~~~~k~v 300 (372)
T PRK06233 222 AVYVINKALADLPEDLTVTTHICRGNFKSTYLFSGGYEPVAKYLGQLN-YDGFFLEYDNDRSGSFEPLKQIWNNRDNVRI 300 (372)
T ss_pred HHHHHHHHHhCCCcCCEEEEEeeCCCCCCcccccCcHHHHHHHHHhCC-CCEEEEecCCCccCccchHHHhhccCCCCEE
Confidence 4446776666654 35788899998761 38899999999 99999999874 5889888752 2237899
Q ss_pred EEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHH
Q 004263 289 FAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKA 367 (765)
Q Consensus 289 ~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~ 367 (765)
++||||++|..+|+++++.+||+++++++|++|||+||||||...-- =..|+++ -|.+||+-|+.+++.
T Consensus 301 ~lGvid~~~~~vE~~e~I~~rI~~a~~~v~~e~l~lspdCGf~s~~~----g~~l~~~------~~~~KL~~l~~~a~~ 369 (372)
T PRK06233 301 VLGLITSKFPELEDEDEIIARIDEATEYVPLSNLALSTQCGFASTEE----GNILTEA------DQWAKLALVKKIADK 369 (372)
T ss_pred EeeeecCCCCCCCCHHHHHHHHHHHHHhCCHHHEEecCCCCCccccc----cCCCCHH------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999992100 0023333 599999999998864
No 28
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-44 Score=389.56 Aligned_cols=315 Identities=20% Similarity=0.261 Sum_probs=275.9
Q ss_pred ceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 004263 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (765)
Q Consensus 2 ~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~r 81 (765)
+|++++|||+ .+|++|++.|-+|+++++++.+..++.+.+.++.|+++|||+++||+|.|+|+|-+++..++++-
T Consensus 7 tt~iGSfPr~---~~l~~a~~~~~~G~i~~ee~~~~~~~~i~~~i~~q~~~Gldv~v~Ge~~r~Dmv~~F~e~l~G~~-- 81 (330)
T COG0620 7 TTVIGSFPRP---EELRKAREKWKKGEISEEEYEEILREAIRRAIKDQEEAGLDVLVDGEFERNDMVEYFAEKLDGVK-- 81 (330)
T ss_pred ccccCCCCCC---hhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEecCCceeecHHHHHHHHHcCCee--
Confidence 4566669999 99999999999999999999999999999999999999999999999999999877766555541
Q ss_pred ccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHc-CCCCceEeehHHH
Q 004263 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (765)
Q Consensus 82 f~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~-g~~~K~vl~GP~T 160 (765)
.+..++.+.|++ ..|+.|++.|+..+ ..+++++++.+|+++ ..++|.+||||+|
T Consensus 82 ----------------------~~~~~~v~~~~~-~~~r~p~i~g~v~~--~~~~~v~~~~~a~~~~~~~~K~~ltGP~t 136 (330)
T COG0620 82 ----------------------FTQNGWVRSYGS-RCYRPPIIIGDVSR--PEPMTVEEFLYAQSLTEKPVKGMLTGPVT 136 (330)
T ss_pred ----------------------eccCCcEEEecc-EEeeCceEeccccc--CCCCcchhhhhhhhccCccceeeeccHHh
Confidence 124578888988 88999999998665 678899999999986 4789999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCC----hHHHHHHHHHHHHHHccC-CC
Q 004263 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD----SHKLQAFSDAYSELQSSL-SG 235 (765)
Q Consensus 161 ~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~----~~~~~~~~~~y~~l~~~~-~~ 235 (765)
++.+|.+ .+|. ++.+++.+++.+|++++++|.++||++||||||+|...++ ++.++.+..+++...++. ..
T Consensus 137 i~~~s~~-~~~~---~~~el~~~iA~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d 212 (330)
T COG0620 137 ILLWSFN-RYYI---SREELAKDIALALRDEVKDLEDAGIKIIQIDEPALREGLPLRRDDDYLEWAVEAINLAAAGVGAD 212 (330)
T ss_pred hHhhhcc-ccCC---CHHHHHHHHHHHHHHHHHHHHHcCCCEEeechhhhhcCCccccchHHHHHHHHHHHHHHhcCCCC
Confidence 9999986 4553 8999999999999999999999999999999999987643 235677777777766653 24
Q ss_pred CcEEEEeccCCCchhhHHHHhcCCCccEEEEEecc-CCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHh
Q 004263 236 LNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR-GTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLA 314 (765)
Q Consensus 236 ~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~-~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~ 314 (765)
.+||+|.||+++ .++.+.+..++ +|++.+++.+ +.+.++.+.. +..++.+++||||.|+..+|+.+++.++|++++
T Consensus 213 ~~i~~HiCy~e~-~~~~~~i~~ld-~dv~~~e~~~s~~~~~~~~~~-~~~~~~Ig~Gv~d~~~~~ve~~eei~~~i~k~~ 289 (330)
T COG0620 213 TQIHLHICYSEF-NDIPDAIEALD-ADVIDIETSRSRMELLEVLEE-VKYDKEIGLGVVDIHSPKVESVEEIAARIRKAL 289 (330)
T ss_pred cEEEEEEECCcc-cchhHHHhhcC-CcEEeeeccccccchhHHHHh-ccCCCeeecceEecCCCCcCCHHHHHHHHHHHH
Confidence 699999999999 88889999999 9999999998 4567887775 556789999999999999999999999999999
Q ss_pred hhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHcc
Q 004263 315 GTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (765)
Q Consensus 315 ~~~~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~ 369 (765)
+.+|++++||+|||||..+|+. -|.+||..|+..++.++
T Consensus 290 ~~~~~e~~~vnPDCGl~~~~~~----------------~a~~kL~nmv~a~~~~r 328 (330)
T COG0620 290 ERVPPERLYVNPDCGLKTLPRE----------------IAEAKLENMVKAAKEIR 328 (330)
T ss_pred HhCChheEEEcCCCCcccCcHH----------------HHHHHHHHHHHHHHHHh
Confidence 9999999999999999999976 49999999999988764
No 29
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=100.00 E-value=1.4e-44 Score=393.63 Aligned_cols=305 Identities=21% Similarity=0.256 Sum_probs=248.0
Q ss_pred ceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeEEeccc
Q 004263 434 TTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNG 513 (765)
Q Consensus 434 tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~~~g 513 (765)
||+|||||||.+++++++.||+|+++.+++++..++.+..+|+.|+++|+|+++|||| |.||+.+|.+.+.|+.. +
T Consensus 2 ~t~vGS~P~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~gl~~i~dge~-~~~~~~~~~~~~~~~~~---~ 77 (321)
T cd03310 2 ATGIGSYPLPDGVTKEWSILEKGAIEPEWPEEALFTALGSFFELQLEAGVEVPTYGQL-GDDMIGRFLEVLVDLET---G 77 (321)
T ss_pred CCcccCCCCchhHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhhcCCcCCCccc-HHHHHhhHHHHHHHhhc---c
Confidence 7999999999999999999999999999999999999999999999999999999999 99999999999999863 2
Q ss_pred eeeecCCce-eeCcEEEccC-CCCcccchhHHHHHHhccCCCceEeeechhHHhhhccccCC--CCHHHHHHHHHHHHHH
Q 004263 514 WVQSYGSRC-VKPPIIYGDV-SRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRND--QPRFETCYQIALAIKD 589 (765)
Q Consensus 514 ~~~~~~t~~-~~~P~i~g~i-~~~~p~~~~~~~~a~~~t~~~vK~~ltGPvTll~~s~~~~~--~~~~e~~~~la~al~~ 589 (765)
++||++|| |++|+++|++ ..+.+..+++++.+.+. ..++|++++||+|++.+++..++ ..+++++++++.++++
T Consensus 78 -~~~~~~n~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~vk~~l~GP~Tla~~~~~~~~~~~~~~~l~~~l~~~~~~ 155 (321)
T cd03310 78 -TRFFDNNFFYRPPEAKIEAFLPLELDYLEEVAEAYKE-ALKVKVVVTGPLTLALLAFLPNGEPDAYEDLAKSLAEFLRE 155 (321)
T ss_pred -cccccccceeccchhcccccccccHHHHHHHHHhcCC-CCceEEEecCHHhHhHhhccccCCchHHHHHHHHHHHHHHH
Confidence 78999986 9999999986 32222233444333322 36899999999999999997766 4678999999999999
Q ss_pred HHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEEE
Q 004263 590 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVIT 669 (765)
Q Consensus 590 ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~is 669 (765)
++++|.++|+.+||||||++...+... ....+.+.++++.+..+. ...+++|+|++ .+++.+.++++|+|+
T Consensus 156 ~~~~l~~~G~~~iqidEP~l~~~~~s~----~~~~~~~~~~~~~~~~~~--~~~~~lHic~~---~~~~~l~~~~vd~l~ 226 (321)
T cd03310 156 QVKELKNRGIVVVQIDEPSLGAVGAGA----FEDLEIVDAALEEVSLKS--GGDVEVHLCAP---LDYEALLELGVDVIG 226 (321)
T ss_pred HHHHHHhcCCcEEEeCCCccccccccc----cchHHHHHHHHHHHhhcc--CCceEEEECCC---CCHHHHHhCCCCEEE
Confidence 999999999999999999999875321 112344555666554422 23478999966 579999999999999
Q ss_pred EecCCCC---hhhHHHhhhccc-CCceeccccccC----CCCCCC--CHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCC
Q 004263 670 IENSRSD---EKLLSVFREGVK-YRAGIGPGVYDI----HSPRIP--STEEIADRINKMLAVLESNILWVNPDCGLKTRK 739 (765)
Q Consensus 670 iE~~r~~---~~~L~~~~~~~~-~~~~l~~GVvd~----~s~~ve--~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~ 739 (765)
+|..+.. .+.+..|.+ .+ .++.+|+|++|+ +|+|.+ +++++.++++.....+ .+++||+|||||.+++
T Consensus 227 ~D~~~~~~~~~~~l~~~~~-~g~~~~~lg~gvid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~vtpscgL~~~p 304 (321)
T cd03310 227 FDAAALPSKYLEDLKKLLR-IGVRTLILGLVVTDNEAKGRNAWKEIERLEKLVRRLEEPGEVL-DEILYLTPDCGLAFLP 304 (321)
T ss_pred EecccCcccchhHHHHHHh-cCCceEEEEeeecCCcccCCCHHHHHHHHHHHHHHhccchhhh-hhceeeCCCccCCCCC
Confidence 9975543 467877866 44 467899999999 999987 4444444444432222 3889999999999999
Q ss_pred hhhHHHHHHHHHHHHH
Q 004263 740 YSEVKPALSNMVAAAK 755 (765)
Q Consensus 740 ~~~~~~kL~~mv~aa~ 755 (765)
++.|++||++|+++++
T Consensus 305 ~~~a~~kl~~l~~~a~ 320 (321)
T cd03310 305 PQEARRKLALLAEAAR 320 (321)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999986
No 30
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=100.00 E-value=2.2e-44 Score=393.92 Aligned_cols=311 Identities=22% Similarity=0.225 Sum_probs=260.6
Q ss_pred ceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 004263 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (765)
Q Consensus 2 ~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~r 81 (765)
+||+++|||+ ++|++|+++|.+|+++.++|+++.++++++.++.|+++|||+||||||+|.|++.++...++++-
T Consensus 2 tt~vGS~prp---~~l~~a~~~~~~g~~~~~~l~~~~~~ai~~~v~~Q~~~GldiitDGe~~r~~~~~~f~~~l~G~~-- 76 (332)
T cd03311 2 TTTVGSFPRP---KELREARAKFKKGEISAEELREAEDDAIADAVKDQEEAGLDVVTDGEFRRSDMVEYFLERLDGFE-- 76 (332)
T ss_pred CceecCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcccccHHHHHHHhCCcee--
Confidence 5777789999 99999999999999999999999999999999999999999999999999998888877666541
Q ss_pred ccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHcC--CCCceEeehHH
Q 004263 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALG--METVPVLVGPV 159 (765)
Q Consensus 82 f~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g--~~~K~vl~GP~ 159 (765)
..+..+++ .|..|..|.+.++... ..+..+.+++.+++.. .++|++++||+
T Consensus 77 ------------------------~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lk~~l~GP~ 129 (332)
T cd03311 77 ------------------------FTGWVQSY-GSRYYKPPGIVGDVSR--RPPMTVEEGKIAQSLTHPKPLKGILTGPV 129 (332)
T ss_pred ------------------------eccceeee-ccceeeCCeeeccccc--CCCCeEEEEEEeccCCCCccccccCCCCe
Confidence 11233445 3445788888765322 2344555666665542 67899999999
Q ss_pred HHhhhccCCCC---cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCCh----HHHHHHHHHHHHHHcc
Q 004263 160 SYLLLSKPAKG---VEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDS----HKLQAFSDAYSELQSS 232 (765)
Q Consensus 160 T~l~l~~~~~~---y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~----~~~~~~~~~y~~l~~~ 232 (765)
|++.++.+ .. |+ +..+++++|+++|++++++|+++||++||||||+|+..++. ...+.+..+++.+...
T Consensus 130 Tla~~~~~-~~~~~y~---~~~el~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 205 (332)
T cd03311 130 TIPSPSFV-RFRGYYP---SREELAMDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADR 205 (332)
T ss_pred eECCchhh-cccccCC---CHHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhC
Confidence 99988875 33 53 78899999999999999999999999999999999887654 4567778888888652
Q ss_pred CCCCcEEEEeccCCCc---------hhhHHHHhcCCCccEEEEEeccC-CCChhhHhhhCCCCCEEEEEEeeCCCCCcCC
Q 004263 233 LSGLNVLIETYFADVP---------AETYKILTSLKGVTGFGFDLIRG-TKTLDLIKTEFPLGKYLFAGVVDGRNIWAND 302 (765)
Q Consensus 233 ~~~~~i~l~tyfg~~~---------~~~~~~l~~l~~vd~l~lD~~~~-~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed 302 (765)
.....+.+|+|||++. .++++.|.+++ ||+|++|+++. .++++.+.. ++.+|.|++||||++|+|+|+
T Consensus 206 ~~~~~v~lHiC~G~~~~~~~~~~~y~~i~~~l~~~~-vd~~~le~~~~~~~~~~~l~~-~~~~k~l~~GvVd~~~~~~e~ 283 (332)
T cd03311 206 PDDTQIHTHICYGNFRSTWAAEGGYEPIAEYIFELD-VDVFFLEYDNSRAGGLEPLKE-LPYDKKVGLGVVDVKSPEVES 283 (332)
T ss_pred CCCCEEEEEEECCCCcccccccCcHHHHHHHHHhCC-CCEEEEEEcCCCCcchHHHHh-CCCCCEEEeeeecCCCCCCCC
Confidence 2235889999999762 36889999999 99999999984 578999975 777899999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHH
Q 004263 303 LASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAK 366 (765)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~ 366 (765)
+++++++|+++.++++.++++|||||||.++|.+ .|.+||+.|+.+++
T Consensus 284 ~e~v~~ri~~~~~~~~~~~l~lsp~CGl~~~~~~----------------~a~~kl~~~~~~~~ 331 (332)
T cd03311 284 PEEVKDRIEEAAKYVPLEQLWVSPDCGFATRERG----------------NALTKLENMVKAAL 331 (332)
T ss_pred HHHHHHHHHHHHhhCCHHHEEECCCCCCCcCCCc----------------hhHHHHHHHHHHhh
Confidence 9999999999999999899999999999999986 49999999988864
No 31
>PRK01207 methionine synthase; Provisional
Probab=100.00 E-value=2e-43 Score=379.73 Aligned_cols=306 Identities=14% Similarity=0.204 Sum_probs=256.3
Q ss_pred ceeccc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccc-CCCCcccchhhhhhHhhhCCCC
Q 004263 2 ASHVVG-YPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFI-PSNTFSYYDQVLDTTAMLGAVP 79 (765)
Q Consensus 2 ~t~~~G-~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~i-t~Gefs~yD~vLD~~~~~g~ip 79 (765)
.||++| ||++ ++++++. ++++. .+++.+...+.++..++.|+++|||+| +||++.++| |.+
T Consensus 5 ~TT~iGS~P~p---~~~~~~~---~~~~~-~~~~~e~~~~ai~~~v~~Qe~aGlDiv~~dGe~~R~d-mv~--------- 67 (343)
T PRK01207 5 ITQEIGSFRKP---EYLSREF---HKIEG-TDKFYELAERATLETLDVFENAGLDNIGIGGEMFRWE-MYE--------- 67 (343)
T ss_pred cccccCCCCCC---HHHHHHH---hccCC-CHHHHHHHHHHHHHHHHHHHHcCCCEEeeCCcEeech-HHH---------
Confidence 355555 9999 8876666 55655 577777777799999999999999999 799999877 432
Q ss_pred CcccCCCCCccchhhhhhc-cCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHc-CCCCceEeeh
Q 004263 80 PRYSWNGGEIGFDVYFSMA-RGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVG 157 (765)
Q Consensus 80 ~rf~~~~~~~~l~~yFa~a-rG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~-g~~~K~vl~G 157 (765)
||+.. .| ....++.+.|+++ +|+.|.+.|+... ..+..++++++|+++ ..++|.+|||
T Consensus 68 --------------~f~~~l~G---~~~~g~vr~y~~~-~~r~Pii~g~i~~--~~~~~v~e~~~a~~~t~kpvK~~ltG 127 (343)
T PRK01207 68 --------------HPAERIKG---IIFYGMVRSFDNR-YYRKGSIIDRMER--RSSFHLDEVEFVADNTKKPIKVPITG 127 (343)
T ss_pred --------------HHHHhcCC---eEecCeEEEeccc-cccCCeEEeeccC--CCCCcHHHHHHHHHccCCCcEEEecC
Confidence 33322 44 2235788899985 4999999998554 467789999999998 4778999999
Q ss_pred HHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHc------CCC-eEEeeccccccCCChHHHHHHHHHHHHHH
Q 004263 158 PVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAA------GAT-WIQFDEPTLVLDLDSHKLQAFSDAYSELQ 230 (765)
Q Consensus 158 P~T~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~------G~~-~VQiDEP~L~~d~~~~~~~~~~~~y~~l~ 230 (765)
|+|++.||.+ ++|. ++.+++.+++.+.++++++|.++ ||. +||||||+|... .++++.+.++++...
T Consensus 128 P~Ti~~~S~~-~~Y~---~~~el~~~iA~al~~Ev~~L~~a~~~~~~G~~~~IQiDEPal~~~--~~~l~~av~a~n~~~ 201 (343)
T PRK01207 128 PYTMMDWSFN-DFYR---DRYDLAMEFARIINEELKDIKSAWDRKSPGRKLEIQIDEPATTTH--PDEMDIVVDSINKSV 201 (343)
T ss_pred HHHHHHHhcc-cccC---CHHHHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEeCCCcCCC--hHHHHHHHHHHHHHH
Confidence 9999999986 6774 89999999999999999999999 998 699999999864 356777778888888
Q ss_pred ccCCCCcEEEEeccC-CCchhhHHHHhcCCCccEEEEEeccCC--------------CChhhHhh---hCCCCCEEEEEE
Q 004263 231 SSLSGLNVLIETYFA-DVPAETYKILTSLKGVTGFGFDLIRGT--------------KTLDLIKT---EFPLGKYLFAGV 292 (765)
Q Consensus 231 ~~~~~~~i~l~tyfg-~~~~~~~~~l~~l~~vd~l~lD~~~~~--------------~~l~~l~~---~~p~~k~l~lGv 292 (765)
++++. ++++|+||| ++ .++++.|.+++ ||.|++|++++. ++|+.+.. .++.++.|++||
T Consensus 202 ~gv~~-~i~~H~C~g~~~-~~i~~~i~~~~-~d~~~~E~a~~~~~~~~~~~~~r~~~~~l~~~~~~~~~l~~~~~Ig~GV 278 (343)
T PRK01207 202 YGIDN-EFSIHVCYSSDY-RLLYDRIPELN-IDGYNLEYSNRDTLEPGTSDEKRPGFQDLKYFAEHNESLQRKKFIGLGV 278 (343)
T ss_pred hCCCC-cEEEEEEcCCCh-HHHHHHHHhCC-CCEEEEEeccCcccccccccccccchhHHHHHHhhccccCCCCeEEeeE
Confidence 87764 799999999 79 99999999999 999999999543 35666643 244667899999
Q ss_pred eeCCCCCcCCHHHHHHHHHHHhhhc-CCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHcc
Q 004263 293 VDGRNIWANDLASSLTTLQDLAGTV-GKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (765)
Q Consensus 293 Vdgrn~~~ed~~~~~~~l~~~~~~~-~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~ 369 (765)
+|.||+.+|+++++.++|+++++++ |+++|||+|||||...|++ -|.+||+.|+..++.++
T Consensus 279 ~D~~s~~vEs~e~I~~ri~~~l~~v~~~e~l~vnpDCGl~t~~~~----------------~a~~KL~~mv~aa~~~r 340 (343)
T PRK01207 279 TDVHIDYVEPVKLIEDRIRYALKIIKDPELVRLNPDCGLRTRSRE----------------IGEQKLRNMVAAKNNIL 340 (343)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHhcCCcceEEEcCCCCCCcCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 7999999999999999886 49999999999987764
No 32
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine []. The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A ....
Probab=100.00 E-value=4.5e-43 Score=373.62 Aligned_cols=277 Identities=19% Similarity=0.243 Sum_probs=209.0
Q ss_pred ceecccCCC---cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCC----
Q 004263 434 TTTIGSFPQ---TMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSG---- 506 (765)
Q Consensus 434 tt~iGSfPr---~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G---- 506 (765)
|+++| ||| .+|||+|.|+||+|+||++++.+..++..+..|+.|.++|||.|++|+|++||+|++.+..++-
T Consensus 2 t~~lG-yPRiG~~RELK~alE~yW~g~~~~~~L~~~~~~lr~~~w~~q~~agld~ip~gdfs~YD~vLD~~~~~g~iP~r 80 (310)
T PF08267_consen 2 THILG-YPRIGPNRELKKALEAYWKGKISEEELEQTAKELRKEHWQLQKEAGLDLIPVGDFSLYDHVLDTAVLLGAIPER 80 (310)
T ss_dssp EE-S----SSTTTTHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHTT-SBEEES---SS-HHHHHHHHTT---GG
T ss_pred Ccccc-CCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCchhhHHHHHHHHhccCChh
Confidence 66777 999 7999999999999999999999999999999999999999999999999999999986544332
Q ss_pred ------------eEE--------eccceeeecCCce-eeCcEEEccCCCC--cccchhHHHHHHhccCCCceEeeechhH
Q 004263 507 ------------FAF--------TVNGWVQSYGSRC-VKPPIIYGDVSRP--KAMTVFWSSMAQSMTKRPMKGMLTGPVT 563 (765)
Q Consensus 507 ------------~~~--------~~~g~~~~~~t~~-~~~P~i~g~i~~~--~p~~~~~~~~a~~~t~~~vK~~ltGPvT 563 (765)
++. .+.+|+||||||| |++|++.++..+. ..-.++++..|+++ +.++|++|+||+|
T Consensus 81 f~~~~~~~~l~~yFamARG~~~~~a~eMtKWFdTNYHY~VPE~~~~~~f~l~~~~~~~~~~eA~~~-G~~~kpvL~GP~T 159 (310)
T PF08267_consen 81 FRHADGLDDLDRYFAMARGTDDVPALEMTKWFDTNYHYIVPEITGDTEFKLDSNKLLDEFREAKAL-GINTKPVLPGPVT 159 (310)
T ss_dssp GCT-TSSSSHHHHHHHHHSCCCCT--EEEESTTSS-EEEE-EE-TTS----SCCHHHHHHHHHHHT-TGGEEEEEE-HHH
T ss_pred hccCCCCCCHhheeeeccCCCCCchHHHHHHhccCCCeEceEECCCCceeeCcchHHHHHHHHHhh-hcCCeeEEEcHHH
Confidence 111 2445899999998 9999999986642 22237888888766 5899999999999
Q ss_pred HhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCce
Q 004263 564 ILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQ 643 (765)
Q Consensus 564 ll~~s~~~~~~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~ 643 (765)
++.+|....+.++.+++++|+.+|.++++.|.++||.+||||||+|..+++ ++.++.+..+|+... .....+
T Consensus 160 fL~Lsk~~~~~~~~~ll~~l~~vY~~ll~~L~~~G~~~VQldEP~Lv~d~~------~~~~~~~~~aY~~L~--~~~~~~ 231 (310)
T PF08267_consen 160 FLLLSKNEDGSDPLDLLDDLLPVYAELLKELAAAGVEWVQLDEPALVLDLP------EEWLEAFEEAYEELA--AAPRPK 231 (310)
T ss_dssp HHHTSEETTCCHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSGC------HHHHHHHHHHHHHHC--CTTTSE
T ss_pred HHHHcCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCeeecCCC------HHHHHHHHHHHHHHh--cCCCCc
Confidence 999999888777889999999999999999999999999999999997642 456777888888876 334689
Q ss_pred EEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHHhhh-cccCCceeccccccCCCCCCCCHHHHHHHHHHHHhh
Q 004263 644 VHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFRE-GVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAV 721 (765)
Q Consensus 644 I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~-~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~ 721 (765)
|++++|||+..+.++.+.++++|+|++|..+ +.+.+..+.. +++.++.|++||||+||+|.++++++.+.++++.+.
T Consensus 232 ill~TYFg~~~~~l~~l~~lpv~~l~lDlv~-~~~~l~~~~~~~~p~~k~L~~GvVDGRNiW~~dl~~~~~~l~~l~~~ 309 (310)
T PF08267_consen 232 ILLATYFGDLGDNLELLLDLPVDGLHLDLVR-GPENLEALLKYGFPADKVLSAGVVDGRNIWRTDLEAALALLEKLREK 309 (310)
T ss_dssp EEEE--SS--CCHHHHHTTSSESEEEEETTT-HCHHHHHHHHHTTTTTSEEEEEEE-SSS-B---HHHHHHHHHHHHHC
T ss_pred EEEECCCCchhhHHHHHhcCCCcEEEeeccC-CcccHHHHHhcCCCCCCEEEEEEECCccccccCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999766 3334444433 122378999999999999999999999999998764
No 33
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=100.00 E-value=1.9e-41 Score=369.42 Aligned_cols=311 Identities=21% Similarity=0.258 Sum_probs=236.6
Q ss_pred ceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 004263 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (765)
Q Consensus 2 ~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~r 81 (765)
||+|++|||+ ++|++|+++|-+|+++.++|++..++++++.++.|+++|||+||||||++-|++.++...+.++ .
T Consensus 3 TT~VGS~prp---~~l~~a~~~~~~g~~~~~~l~~~~~~ai~~~V~~Q~~~GldvitDGE~~R~~~~~~f~~~l~G~-~- 77 (324)
T PF01717_consen 3 TTVVGSFPRP---EELKEAREAFAKGEISPEELEEIEDEAIADAVKRQEDAGLDVITDGEFRRGDFHSYFAERLDGF-G- 77 (324)
T ss_dssp BB-SSB---S---HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHT-SCBE-BTTT-SSTTHHHHTTSEEE-E-
T ss_pred CcccCCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceecceeccCchhhhhhhhccCc-e-
Confidence 4666669999 9999999999999999999999999999999999999999999999999888888876655444 1
Q ss_pred ccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHc-CCCCceEeehHHH
Q 004263 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (765)
Q Consensus 82 f~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~-g~~~K~vl~GP~T 160 (765)
+. + .+...-|.+ .++..|.+.++ +....+..++++.+++.. ..++|.+++||+|
T Consensus 78 ~~----------------~------~~~~~~~~~-~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~vK~~i~gP~t 132 (324)
T PF01717_consen 78 DT----------------L------NGDVQSFGE-RYYRPPIVVGK--ISRKKPFAVEEFKYAQSLTDKPVKGTITGPST 132 (324)
T ss_dssp EE----------------S------SEEEEEETT-EEEEEEEEEEE--EEESS-SSHHHHHHHHHT-SSSBEEEEE-HHH
T ss_pred ee----------------c------cccceeccc-ccccceEEecc--cccCCcchhHHHHHHHhccccccccccCHHHH
Confidence 10 0 011122333 23567777775 334566778888888876 4558999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHH---HHHH-----HHHHHHHHcc
Q 004263 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHK---LQAF-----SDAYSELQSS 232 (765)
Q Consensus 161 ~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~---~~~~-----~~~y~~l~~~ 232 (765)
++..+.. .+|. +..+++.+++.+|+++++.|+++||++||||||+|........ ...+ ..+.+....+
T Consensus 133 l~~~~~~-~~y~---~~~~~~~dla~a~~~ei~~l~~~G~~~iQiDeP~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (324)
T PF01717_consen 133 LADPSAN-RYYK---DREELLEDLAEAYREEIRALYDAGCRYIQIDEPALSEGPPDASFDRDEYLDEAVAAEALNRAVKG 208 (324)
T ss_dssp HHHTSEE-SSSS----HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETCHHCTSCSSHHHHHHHHHHHHHHHHHHHTTST
T ss_pred hhchhcc-ccCC---CHHHHHHHHHHHHHHHHHHHHHCCCCEEEecchHhhcchhhhcccHHHHHHHHHHHHHHHhccCC
Confidence 9988775 4554 8899999999999999999999999999999998876543221 1111 2222222222
Q ss_pred CCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCC-CChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHH
Q 004263 233 LSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGT-KTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQ 311 (765)
Q Consensus 233 ~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~-~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~ 311 (765)
. ...+.+|+|+|++ ...++.|.+++ ||+++||+++.. ++|+.|.+ ++.+|.|++||||+++..+|+++++.++|+
T Consensus 209 ~-~~~v~~H~C~~~~-~~~~~~l~~~~-vd~~~lE~~~~~~~~l~~l~~-~~~~k~v~lGvv~~~~~~vE~~e~v~~ri~ 284 (324)
T PF01717_consen 209 E-DATVGVHVCRGNY-PSILPLLADLN-VDAFFLEFADRRAGDLEPLRE-LPSGKKVVLGVVDTKSPEVESPEEVADRIE 284 (324)
T ss_dssp T-TSEEEEEESSSCH-CTTHHHHHCSS--SEEEEEETSSTTGGGHHCHC-TTTTSEEEEEES-TTSSS--THHHHHHHHH
T ss_pred C-CCEEEEEecCccc-hhhHHHHhhcc-cceEEeecccCCcccHHHHHh-CcCCceEEEEEEcCCCCCcCCHHHHHHHHH
Confidence 2 3588999999998 66779999999 999999999864 89999987 899999999999999999999999999999
Q ss_pred HHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHH
Q 004263 312 DLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAK 366 (765)
Q Consensus 312 ~~~~~~~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~ 366 (765)
+++++++++||+++|||||..++.+ -|.+||+.|+..|+
T Consensus 285 ~a~~~~~~~~l~~sPdCGfa~~~~~----------------~a~~kL~~~v~aa~ 323 (324)
T PF01717_consen 285 EALEYVPLEQLWLSPDCGFASLTRE----------------EARAKLRNMVEAAR 323 (324)
T ss_dssp HHHTTS-GGGEEEEESSTSTTS-HH----------------HHHHHHHHHHHHHH
T ss_pred HHHhcCccccEEEcCCCCCCCCCHH----------------HHHHHHHHHHHHHc
Confidence 9999999999999999999988766 59999999999875
No 34
>PRK00957 methionine synthase; Provisional
Probab=100.00 E-value=5.6e-40 Score=354.85 Aligned_cols=294 Identities=17% Similarity=0.205 Sum_probs=238.1
Q ss_pred ceeccc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 004263 2 ASHVVG-YPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (765)
Q Consensus 2 ~t~~~G-~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~ 80 (765)
.||++| ||++ +++.+. +|..-.+.+.+++..++++++.++.|+++|||+|||||||+ |.+.++...+.++
T Consensus 3 ~t~~vgs~p~~---~~~~~~---~~~~~~~~~~~~~~~~~ai~~~v~~q~~~Gld~vtdGe~r~-~~~~~f~~~l~G~-- 73 (305)
T PRK00957 3 ITTVVGSYPVV---KGEPET---LKDKIKGFFGLYDPYKPAIEEAVADQVKAGIDIISDGQVRG-DMVEIFASNMPGF-- 73 (305)
T ss_pred CcceecCCCCC---ccchhH---HHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCccC-chHHHHHhcCCCc--
Confidence 466666 9999 553333 23333677889999999999999999999999999999975 5566654433222
Q ss_pred cccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccC-CccchHHHHHHHHc------CCCCce
Q 004263 81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYA-SHKAVQEYKEAKAL------GMETVP 153 (765)
Q Consensus 81 rf~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~-~~~~~~e~~~a~~~------g~~~K~ 153 (765)
. | |.+.++.++ . .+.++++|++++++ +.++|+
T Consensus 74 ---------------------~-------------~-----~~vvg~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~vK~ 112 (305)
T PRK00957 74 ---------------------D-------------G-----KRVIGRVEP--PAKPITLKDLKYAKKVAKKKDPNKGVKG 112 (305)
T ss_pred ---------------------c-------------C-----CeEEEeecC--CCCCCcHHHHHHHHHHHhccCCCCceeE
Confidence 0 1 223354333 3 47789999999976 357999
Q ss_pred EeehHHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccC
Q 004263 154 VLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSL 233 (765)
Q Consensus 154 vl~GP~T~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~ 233 (765)
+|+||+||+.++....+|. +....+++.+|+++|++++++|+++||++||||||+|+.++.. .+.+..+|+.+.++.
T Consensus 113 ~i~GP~Tla~~~~~~~~y~-~~~~~~~~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~~~~~--~~~~~~~~~~~~~~i 189 (305)
T PRK00957 113 IITGPSTLAYSLRVEPFYS-DNKDEELIYDLARALRKEAEALEKAGVAMIQIDEPILSTGAYD--LEVAKKAIDIITKGL 189 (305)
T ss_pred EecCHHHHHhhcccccccC-CccHHHHHHHHHHHHHHHHHHHHHcCCCEEEecChhhhcCCch--HHHHHHHHHHHHHhh
Confidence 9999999998887534664 2334789999999999999999999999999999999987543 556778888887655
Q ss_pred CCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHH
Q 004263 234 SGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDL 313 (765)
Q Consensus 234 ~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~ 313 (765)
+ ..+.+|+| |++ .++++.|.+++ ||+|++|++++..+++.+...++.+|.+++||||++|+|+++++++.++|+++
T Consensus 190 ~-~~v~lH~C-G~~-~~i~~~l~~~~-vd~i~ld~~~~~~~l~~l~~~~~~~k~l~~GvId~~~~~~e~~e~v~~~i~~~ 265 (305)
T PRK00957 190 N-VPVAMHVC-GDV-SNIIDDLLKFN-VDILDHEFASNKKNLEILEEKDLIGKKIGFGCVDTKSKSVESVDEIKALIEEG 265 (305)
T ss_pred C-CceEEEEC-CCc-HHHHHHHHhCC-CCEEEEeecCCCCCHHHHhhhccCCCEEEEEEEcCCCCCCCCHHHHHHHHHHH
Confidence 3 45677777 889 88999999999 99999999987778888865455689999999999999999999999999999
Q ss_pred hhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHc
Q 004263 314 AGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKAL 368 (765)
Q Consensus 314 ~~~~~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l 368 (765)
.+++++++++|||||||.|+|++ -|.+||+.|+..++.+
T Consensus 266 ~~~~~~~~l~lsp~CGl~~~~~~----------------~~~~kL~~l~~aa~~~ 304 (305)
T PRK00957 266 IEILGAENILIDPDCGMRMLPRD----------------VAFEKLKNMVEAAREI 304 (305)
T ss_pred HHhcCHHHEEECCCcCCCcCCHH----------------HHHHHHHHHHHHHHHh
Confidence 99999899999999999999977 4999999999988753
No 35
>PRK06438 hypothetical protein; Provisional
Probab=100.00 E-value=8.6e-38 Score=324.19 Aligned_cols=279 Identities=19% Similarity=0.271 Sum_probs=234.6
Q ss_pred Cceeccc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCC
Q 004263 1 MASHVVG-YPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVP 79 (765)
Q Consensus 1 ~~t~~~G-~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip 79 (765)
+++.+.| |||+ .++++.+++|..|+++.+++.++.++.+.+.+..|+++|||++|||.|+|+|. ++..
T Consensus 2 ~~~~~~G~yPrp---~~l~k~l~~~~~G~i~~e~l~~~~~~~~~~~~~~q~~aGld~~tdG~lrWdDi-~~~~------- 70 (292)
T PRK06438 2 VKKLVYGIYPRT---EELRLEYNRWERGLIPDSEINEKINEEKYIFYDKVKDIGIDEYTDPLFNWYDI-FRPI------- 70 (292)
T ss_pred cccccCCCCCCC---HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhcCCceEecCccchHHh-hhhH-------
Confidence 3567788 9999 99999999999999999999999999999999999999999999999999774 3321
Q ss_pred CcccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHc--------CCCC
Q 004263 80 PRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL--------GMET 151 (765)
Q Consensus 80 ~rf~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~--------g~~~ 151 (765)
+...+| +..++++|+||||++|+.|++.|+..+ +...+++..+.++ +...
T Consensus 71 ---------------~~~~~g---ve~ggL~Ry~dNN~fYR~Pvv~g~l~~----~~~~~~~~~~~e~~~~~~~~~~~~l 128 (292)
T PRK06438 71 ---------------SLSVNG---VSLGPLTRYLETNTFYRIPEISGVKDF----NRELDKFQKIDENPPLPLYHLKKGI 128 (292)
T ss_pred ---------------HHHhcC---ccccceeEEeccCceeecceecCCCCc----chhhHHHHHHHhcccccccCCCCCc
Confidence 122355 456799999999999999999998766 6788888888764 2456
Q ss_pred ceEeehHHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChH-HHHHHHHHHHHHH
Q 004263 152 VPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSH-KLQAFSDAYSELQ 230 (765)
Q Consensus 152 K~vl~GP~T~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~-~~~~~~~~y~~l~ 230 (765)
|.|||||+||+.||.+ ++|. |..+|+.+++.+|+++++.|- ++.|+|.||+|. +.+.. ..+.+.+
T Consensus 129 kavLPGPyT~a~lS~n-e~Y~---d~~e~~~aia~~l~~e~~al~---v~~v~l~EPsl~-~~~~~~~~e~~~e------ 194 (292)
T PRK06438 129 SIFLPSPYSFYKMSKT-LEKI---DYNDFYKKLVNIYSRILDIFS---IKNVVLLDVFYY-KNDNYSYLSDLAK------ 194 (292)
T ss_pred eEEecCchhHHHhhcc-cccC---CHHHHHHHHHHHHHHHHHhCC---cceEEEecchhc-CCCchhhhhhccc------
Confidence 9999999999999996 7774 889999999999999999885 999999999999 54332 3333322
Q ss_pred ccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHH
Q 004263 231 SSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTL 310 (765)
Q Consensus 231 ~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l 310 (765)
...++|+||||.- ..++..|+ +| ||+| + +.+.+..+.+ + .. .+++|||||||+.+|++++ .+++
T Consensus 195 ----~~~v~l~TYf~~~-~~~~~~L~-~~-vd~i----v-~~~~l~~v~e-y-~~-~v~lGivdarnTkmE~~e~-~~~i 258 (292)
T PRK06438 195 ----KYNVILITSGNVS-KLNFNGLG-HK-FESI----V-RDDEVDYIIN-K-CS-YPGIKIFSGDNTKMEDLKA-RKEI 258 (292)
T ss_pred ----cccEEEEEecCCc-hhhHHhhc-cc-ceeE----e-ccchhhhHHh-h-cC-CceeeeeecCcccccCHHH-hhhc
Confidence 2478899999984 88999999 99 9999 3 4677888876 5 44 7999999999999999999 8888
Q ss_pred HHHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHH
Q 004263 311 QDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNAL 364 (765)
Q Consensus 311 ~~~~~~~~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l 364 (765)
-|.++++|+|||.|..+|+. .|..||+-|..+
T Consensus 259 ------~~~~~v~vt~nt~ldfLP~~----------------~a~~Kl~lL~k~ 290 (292)
T PRK06438 259 ------SGYDNVLLTHSDYMDFLPRE----------------IADIKVELLGKA 290 (292)
T ss_pred ------cCcceEEEcCCchhhhccHH----------------HHHHHHHHHHhh
Confidence 35689999999999999998 488998876654
No 36
>PRK06438 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=322.07 Aligned_cols=282 Identities=10% Similarity=0.040 Sum_probs=244.7
Q ss_pred ccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeEEec
Q 004263 432 LPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTV 511 (765)
Q Consensus 432 ~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~~ 511 (765)
+.+-++||||||.++++.+++|+.|+++.+++.+++++++++++..|.++|||.+|||.++|+||+.+|...++|++ .
T Consensus 2 ~~~~~~G~yPrp~~l~k~l~~~~~G~i~~e~l~~~~~~~~~~~~~~q~~aGld~~tdG~lrWdDi~~~~~~~~~gve--~ 79 (292)
T PRK06438 2 VKKLVYGIYPRTEELRLEYNRWERGLIPDSEINEKINEEKYIFYDKVKDIGIDEYTDPLFNWYDIFRPISLSVNGVS--L 79 (292)
T ss_pred cccccCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhcCCceEecCccchHHhhhhHHHHhcCcc--c
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999984 5
Q ss_pred cceeeecCCc-eeeCcEEEccCCCCcccchhHHHHHHhcc-------CCCceEeeechhHHhhhccccCCCCHHHHHHHH
Q 004263 512 NGWVQSYGSR-CVKPPIIYGDVSRPKAMTVFWSSMAQSMT-------KRPMKGMLTGPVTILNWSFVRNDQPRFETCYQI 583 (765)
Q Consensus 512 ~g~~~~~~t~-~~~~P~i~g~i~~~~p~~~~~~~~a~~~t-------~~~vK~~ltGPvTll~~s~~~~~~~~~e~~~~l 583 (765)
+|.+++|++| |||.|+|.|++++ ++. .+|+..++.+. +.++|++||||+|++.+|.+..+.+..+++.++
T Consensus 80 ggL~Ry~dNN~fYR~Pvv~g~l~~-~~~-~~~~~~~~e~~~~~~~~~~~~lkavLPGPyT~a~lS~ne~Y~d~~e~~~ai 157 (292)
T PRK06438 80 GPLTRYLETNTFYRIPEISGVKDF-NRE-LDKFQKIDENPPLPLYHLKKGISIFLPSPYSFYKMSKTLEKIDYNDFYKKL 157 (292)
T ss_pred cceeEEeccCceeecceecCCCCc-chh-hHHHHHHHhcccccccCCCCCceEEecCchhHHHhhcccccCCHHHHHHHH
Confidence 8999999877 6999999999998 665 78888888763 356799999999999999999889999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcC
Q 004263 584 ALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDM 663 (765)
Q Consensus 584 a~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l 663 (765)
|.++.+++++|. +..|++.||+|. .-+. .++++.+.+ +..+|+|++||.-.+.++.|+ +
T Consensus 158 a~~l~~e~~al~---v~~v~l~EPsl~-~~~~-----~~~~e~~~e-----------~~~v~l~TYf~~~~~~~~~L~-~ 216 (292)
T PRK06438 158 VNIYSRILDIFS---IKNVVLLDVFYY-KNDN-----YSYLSDLAK-----------KYNVILITSGNVSKLNFNGLG-H 216 (292)
T ss_pred HHHHHHHHHhCC---cceEEEecchhc-CCCc-----hhhhhhccc-----------cccEEEEEecCCchhhHHhhc-c
Confidence 999999999876 889999999998 3221 112222221 456889999998667899999 9
Q ss_pred CccEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhH
Q 004263 664 DADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEV 743 (765)
Q Consensus 664 ~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~ 743 (765)
++|+| + + .+.+..+.+ + .+ .|++||+|++|+.+|++++ .+++ -+.++++|+|+|.|...+...+
T Consensus 217 ~vd~i-v---~--~~~l~~v~e-y-~~-~v~lGivdarnTkmE~~e~-~~~i------~~~~~v~vt~nt~ldfLP~~~a 280 (292)
T PRK06438 217 KFESI-V---R--DDEVDYIIN-K-CS-YPGIKIFSGDNTKMEDLKA-RKEI------SGYDNVLLTHSDYMDFLPREIA 280 (292)
T ss_pred cceeE-e---c--cchhhhHHh-h-cC-CceeeeeecCcccccCHHH-hhhc------cCcceEEEcCCchhhhccHHHH
Confidence 99999 3 3 344555555 4 35 8999999999999999999 8888 3569999999999999999999
Q ss_pred HHHHHHHHHHH
Q 004263 744 KPALSNMVAAA 754 (765)
Q Consensus 744 ~~kL~~mv~aa 754 (765)
++||++|.+++
T Consensus 281 ~~Kl~lL~k~~ 291 (292)
T PRK06438 281 DIKVELLGKAG 291 (292)
T ss_pred HHHHHHHHhhc
Confidence 99999998875
No 37
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=8.2e-33 Score=292.52 Aligned_cols=295 Identities=17% Similarity=0.244 Sum_probs=216.7
Q ss_pred eecccCCCCCCcHHHHHHHHHhh---CCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCC
Q 004263 3 SHVVGYPRMGPKRELKFALESFW---DGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVP 79 (765)
Q Consensus 3 t~~~G~PRiG~~reLk~A~e~yw---~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip 79 (765)
|++++||++ ..+++ +.|. .|+++.++|.+ .+.+.++.|++||+|++|+|.|+ | |+++
T Consensus 7 ~~iGsyP~P---~~~~k--~~~~~~~~g~~~~e~l~~----~~~~~~~~q~dAGld~~Tdgqlr--D-m~~~-------- 66 (344)
T PRK06052 7 DDIGSFPLP---EGVTR--EWVENAFETREEDEKLFS----VVRSAFQMKIDAGVQVPTYPQFR--D-MIEQ-------- 66 (344)
T ss_pred ccCCCCCCC---ccccH--HHHhhhhcCCCcHHHHHH----HHHHHHHHHHhcCCccccchHHH--H-HHHh--------
Confidence 455559998 66666 5554 69999999998 88999999999999999999999 4 3332
Q ss_pred CcccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccC-CccchHHHHHHHHcCCCCceEeehH
Q 004263 80 PRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYA-SHKAVQEYKEAKALGMETVPVLVGP 158 (765)
Q Consensus 80 ~rf~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~-~~~~~~e~~~a~~~g~~~K~vl~GP 158 (765)
++...+|.... + -.|.|-|=...+ ..|. -.....+|++-.-...++|..|+||
T Consensus 67 --------------fl~~i~~~~~~---~--------~p~~~~~~~a~i-~el~~~~~~~~~~~~~~~~~~~VKv~iTGP 120 (344)
T PRK06052 67 --------------FLDIIRDEKCC---E--------EPYVVKEECAKI-LELEAIEEVAKEYKEETGETLEVRVCVTGP 120 (344)
T ss_pred --------------HHHHHcCCccc---C--------CCeeeehhhhhH-HHHHHHHHHHHHHHHhhCCCCCeEEEecCH
Confidence 22234553211 1 013322211110 1111 0111222222211235799999999
Q ss_pred HHHhhhccCCCCcCCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCC-hHHHHHHHHHHHHH-----Hc
Q 004263 159 VSYLLLSKPAKGVEKSFS-LLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD-SHKLQAFSDAYSEL-----QS 231 (765)
Q Consensus 159 ~T~l~l~~~~~~y~~~~~-~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~-~~~~~~~~~~y~~l-----~~ 231 (765)
+|++.++.+..+|. | ..+++.+++++.+++++.|.++||.+||||||+|.+.+. ..+.+.+.+|++.. ..
T Consensus 121 ~tL~~~~f~~~~Y~---d~~~~la~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~~~~~~~~i~Al~~a~~~a~~~ 197 (344)
T PRK06052 121 TELYLQEFGGTIYT---DILLILAKSVERFVENAIKSAKNFKIKTISIDEPSLGINPEIQFSDDEIISALTVASTYARKQ 197 (344)
T ss_pred HHHHHHHcCCcccc---chHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCccccCHHHHHHHHHHHHhhhccC
Confidence 99999998744774 5 789999999999999999999999999999999998753 12345555555555 33
Q ss_pred cCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhh-C-CCCCEEEEEEeeC--C-----------
Q 004263 232 SLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTE-F-PLGKYLFAGVVDG--R----------- 296 (765)
Q Consensus 232 ~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~-~-p~~k~l~lGvVdg--r----------- 296 (765)
++ .+++++|+ ++ .++.++++|+||.|++|+.+++.+++.+.+. + -.+|.|++||+|+ +
T Consensus 198 gv-dv~i~lH~---~l---~~~~i~~~~~idvi~~E~A~~~~~L~~l~~~~~e~~dk~ig~GV~dtd~~~~~~~~~~~~~ 270 (344)
T PRK06052 198 GA-DVEIHLHS---PL---YYELICETPGINVIGVESAATPSYLDLIDKKVLEDTDTFLRVGVARTDIFSLIAILNEKYG 270 (344)
T ss_pred Cc-ceEEEEeh---Hh---hHHHHhcCCCCCEEeeeccCChHHHHHHhhhhhhhcCCceEEeEEEchhhcchhhhhhhcc
Confidence 33 25777775 23 2389999988999999999988999988762 1 1378999999999 8
Q ss_pred -------------CCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcccc-cccccccCCcHHHHhHHHHHHHHHHHHH
Q 004263 297 -------------NIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTA-VDLENETKLDQEIKSWLAFAAQKVVEVN 362 (765)
Q Consensus 297 -------------n~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h~P-~~~~~E~~l~~~~~~~lafA~qKl~el~ 362 (765)
+..+|+.+++.++|+++++++|++++||+|||||.+.| +. .|.+||+.|+
T Consensus 271 ~n~~~~~~~~~~~~~~VEsveEI~~rI~~ale~i~~e~lwVNPDCGLK~~~e~~----------------~A~~KL~nmv 334 (344)
T PRK06052 271 TNAWKDKEYLQEIVTELETPEVIKKRLEKAYSIFGDRIKYVGPDCGLGSWPSQE----------------LAFRLLENVA 334 (344)
T ss_pred cccccchhhccccCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCCCCCChhhH----------------HHHHHHHHHH
Confidence 78888999999999999999999999999999999764 33 5999999999
Q ss_pred HHHHHcc
Q 004263 363 ALAKALS 369 (765)
Q Consensus 363 ~l~~~l~ 369 (765)
..++.++
T Consensus 335 ~aa~~~r 341 (344)
T PRK06052 335 KAINEFR 341 (344)
T ss_pred HHHHHHH
Confidence 9988765
No 38
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-32 Score=292.87 Aligned_cols=294 Identities=18% Similarity=0.173 Sum_probs=246.3
Q ss_pred ceecccCCCc---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccC-----
Q 004263 434 TTTIGSFPQT---MDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLS----- 505 (765)
Q Consensus 434 tt~iGSfPr~---~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~----- 505 (765)
.+||-+|||. +|||+|.+.||.|++|.+++.++..+.+..+|+.|.++|+|+|+.+.|+.||.|.+..-.++
T Consensus 3 ~S~i~G~PRiGp~RELK~A~E~~W~GKts~ddL~~va~~LR~~~WK~~k~aGv~~IPSN~FS~YDQvlD~t~~~~~vP~R 82 (765)
T KOG2263|consen 3 ASHIVGYPRIGPKRELKFALESFWDGKTSADDLQKVAADLRSSIWKLMKAAGVKIIPSNTFSHYDQVLDTTAMLGAVPPR 82 (765)
T ss_pred ccccccCCCcCccHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchhHHHHHHhHHHHhcCCCcc
Confidence 5677779995 89999999999999999999999999999999999999999999999999999998553332
Q ss_pred --------Ce---EEeccc--------eeeecCCce-eeCcEEEccCCC--CcccchhHHHHHHhccCCCceEeeechhH
Q 004263 506 --------GF---AFTVNG--------WVQSYGSRC-VKPPIIYGDVSR--PKAMTVFWSSMAQSMTKRPMKGMLTGPVT 563 (765)
Q Consensus 506 --------G~---~~~~~g--------~~~~~~t~~-~~~P~i~g~i~~--~~p~~~~~~~~a~~~t~~~vK~~ltGPvT 563 (765)
|+ +.+++| |++||++|| |..|++..++.+ ...-.++++..|+.+ +....++|.||+|
T Consensus 83 Yg~~sg~~~lD~yFsM~RG~~~v~A~EM~KWFDsNyHyi~Pe~~~e~~F~~~s~KavdEf~EAK~l-Gi~T~PVLvGPvs 161 (765)
T KOG2263|consen 83 YGRTSGEIGLDVYFSMARGNASVPAMEMTKWFDSNYHYIVPELGPEVNFSYASHKAVDEFKEAKAL-GIDTVPVLVGPVS 161 (765)
T ss_pred cccccCccchhhhhhhhcCCCCcchHHHhhhhccCceeeccccCCccceeeccchhHHHHHHHHhc-CCcccceeecchh
Confidence 22 223444 799999998 999998777665 334448999999987 6778999999999
Q ss_pred HhhhccccCC----CCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCC
Q 004263 564 ILNWSFVRND----QPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQ 639 (765)
Q Consensus 564 ll~~s~~~~~----~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~ 639 (765)
++.++....+ ...-.++.+|.+.|.+.+.+|..+|+.+||||||.|..+||. +-++.+.+||...-+...
T Consensus 162 YL~l~K~aKg~~ks~~~lsLl~kiLPvY~Evi~kL~sAGA~~iQiDEPilvmDL~~------~~l~a~k~AY~~l~~~~~ 235 (765)
T KOG2263|consen 162 YLLLSKAAKGVDKSFELLSLLPKILPVYKEVIAKLKSAGATWIQIDEPILVMDLPG------EKLQAFKGAYAELESTLS 235 (765)
T ss_pred hhheeccccCcccccchHHHHHHHhHHHHHHHHHHHhcCCeEEEcCCceEEeeCcH------HHHHHHHHHHHHHHhhcc
Confidence 9998876554 346789999999999999999999999999999999988763 334556666666655544
Q ss_pred CCceEEEEeccCChhHH-HHHHHcCC-ccEEEEecCCCC--hhhH-HHhhhcccCCceeccccccCCCCCCCCHHHHHHH
Q 004263 640 DTTQVHTHMCYSNFNDI-IHSIMDMD-ADVITIENSRSD--EKLL-SVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADR 714 (765)
Q Consensus 640 ~~~~I~~H~C~g~~~~i-~~~l~~l~-~D~isiE~~r~~--~~~L-~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~ 714 (765)
...+.+.+|||+...- ++.|..++ +.++++|..|.. ++.+ ..|++ ++.+..||||++|+|..+...-...
T Consensus 236 -~~~v~l~TYF~~v~~~a~~~lk~L~~v~~~~~D~VR~~e~lD~~~a~~~~----~k~l~~GvVdGRNIW~nDf~~s~a~ 310 (765)
T KOG2263|consen 236 -GLNVLLATYFADVPAEAYKTLKSLKGVTAFGFDLVRGPETLDLVKAGFPE----GKYLFAGVVDGRNIWANDFAASLAT 310 (765)
T ss_pred -ccceeehhhhccCCHHHHHHHhCCcceeeeeeeeeechhhHHHHHhcCCC----CceEEEEEeccchhhhhhHHHHHHH
Confidence 4678999999998644 89999997 999999987753 3332 23554 7899999999999999999999999
Q ss_pred HHHHHhhcCCCcEEEcCCCCCCCCC
Q 004263 715 INKMLAVLESNILWVNPDCGLKTRK 739 (765)
Q Consensus 715 i~~a~~~i~~~~l~vsPdCGL~~~~ 739 (765)
++++...+|.+++.|+++|+|.|.+
T Consensus 311 l~k~~~~vG~dkvvVstS~SlLHt~ 335 (765)
T KOG2263|consen 311 LQKLEGIVGKDKVVVSTSCSLLHTA 335 (765)
T ss_pred HHHHHHhhccceEEEeechhhhccc
Confidence 9999999999999999999999974
No 39
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=99.94 E-value=9e-26 Score=244.12 Aligned_cols=267 Identities=21% Similarity=0.260 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeEEeccceeeecCCceeeCcEEEccC-CCCcccchhHHHH
Q 004263 467 IKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDV-SRPKAMTVFWSSM 545 (765)
Q Consensus 467 ~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~~~g~~~~~~t~~~~~P~i~g~i-~~~~p~~~~~~~~ 545 (765)
-.+.+..++..|. +|+|++++|| +++..|++.|+|.. .++++.++..|.+.++. +...++.+++++.
T Consensus 28 ~~~~~~~~~~~~~-~g~D~~~~~~----~~~~~~~ealg~~~-------~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~ 95 (306)
T cd00465 28 KAEWGITLVEPEE-IPLDVIPVHE----DDVLKVAQALGEWA-------FRYYSQAPSVPEIDEEEDPFREAPALEHITA 95 (306)
T ss_pred Cchhhceeecccc-CCCCeeeecC----cceeehhhhcCceE-------EecCCCCCCCCCcccCCChhhHHHHHHHHHH
Confidence 3566777788888 9999999999 67889999888753 23344445556555554 3345667899999
Q ss_pred HHhccCCCceEeeechhHHhhhccccCC---------CCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCC
Q 004263 546 AQSMTKRPMKGMLTGPVTILNWSFVRND---------QPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLR 616 (765)
Q Consensus 546 a~~~t~~~vK~~ltGPvTll~~s~~~~~---------~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~ 616 (765)
+++.++.|+|+.++||+|++.++..... ....++++.++..++++++++.++|+++||+|||.+....+
T Consensus 96 ~~~~~~~~v~~~~~GP~Tla~~l~~~~~~~~~~~~~p~~~~~ll~~i~~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~-- 173 (306)
T cd00465 96 VRSLEEFPTAGAAGGPFTFTHHSMSMGDALMALYERPEAMHELIEYLTEFILEYAKTLIEAGAKALQIHEPAFSQINS-- 173 (306)
T ss_pred HHhccccceEeecCCHHHHHHHHHcccHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecccccccCC--
Confidence 9988889999999999999998876543 23568999999999999999999999999999999887632
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCC-CceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHHhhhcccCCceecc
Q 004263 617 KSEQDFYLKWAVHSFRITNCGVQD-TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGP 695 (765)
Q Consensus 617 ~~~~~~~l~~~v~a~~~~~~~v~~-~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~ 695 (765)
-.+++.|.+++...++++.+.+.. +..+++|+| |+..++++.+.++++|++++|....+ .....+. ++.+..|..
T Consensus 174 ~is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~c-g~~~~~~~~l~~~~~d~~~~d~~~~d--~~~~~~~-~~~~~~i~G 249 (306)
T cd00465 174 FLGPKMFKKFALPAYKKVAEYKAAGEVPIVHHSC-YDAADLLEEMIQLGVDVISFDMTVNE--PKEAIEK-VGEKKTLVG 249 (306)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCCceEEEEC-CCHHHHHHHHHHhCcceEecccccCC--HHHHHHH-hCCCEEEEC
Confidence 146788999999999999987643 467899999 55578899999999999999965422 2222222 222356777
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHH
Q 004263 696 GVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAK 755 (765)
Q Consensus 696 GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~ 755 (765)
||.+++.. .+.|++.+.++++++.++. +.++||+||+.+.++.. .++|++|++|++
T Consensus 250 gv~~~~~~--~~~e~i~~~v~~~l~~~~~-~~il~~~cgi~~~~~~~-~enl~a~v~a~~ 305 (306)
T cd00465 250 GVDPGYLP--ATDEECIAKVEELVERLGP-HYIINPDCGLGPDSDYK-PEHLRAVVQLVD 305 (306)
T ss_pred CCCccccC--CCHHHHHHHHHHHHHHhCC-CeEEeCCCCCCCCCCCc-HHHHHHHHHHhh
Confidence 77777543 4459999999999999875 89999999999988855 699999999986
No 40
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=99.78 E-value=1.9e-18 Score=187.00 Aligned_cols=220 Identities=17% Similarity=0.190 Sum_probs=164.7
Q ss_pred cceeecccCceeecceecCCCccccCCccchHHHHHHHHcC-CCCceEeehHHHHhhhccCCCC-----cCCCCCHHHHH
Q 004263 108 EMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALG-METVPVLVGPVSYLLLSKPAKG-----VEKSFSLLSLI 181 (765)
Q Consensus 108 ~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g-~~~K~vl~GP~T~l~l~~~~~~-----y~~~~~~~~ll 181 (765)
+..-||++|+|+.+|+...+. .+...+..++..+.+++.+ .++|.+++||+|++.++..... |....+..+++
T Consensus 61 g~~~~~~~~~~p~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~GP~Tla~~l~~~~~~~~~~~~~p~~~~~ll 139 (306)
T cd00465 61 GEWAFRYYSQAPSVPEIDEEE-DPFREAPALEHITAVRSLEEFPTAGAAGGPFTFTHHSMSMGDALMALYERPEAMHELI 139 (306)
T ss_pred CceEEecCCCCCCCCCcccCC-ChhhHHHHHHHHHHHHhccccceEeecCCHHHHHHHHHcccHHHHHHHHChHHHHHHH
Confidence 334489999999999886643 1223456788888888774 7889999999999976653222 21001356799
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEeeccccccC---CChH-HHHHHHHHHHHHHccC--CCCcEEEEeccCCCchhhHHHH
Q 004263 182 DKIIPVYKEVVAELKAAGATWIQFDEPTLVLD---LDSH-KLQAFSDAYSELQSSL--SGLNVLIETYFADVPAETYKIL 255 (765)
Q Consensus 182 ~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d---~~~~-~~~~~~~~y~~l~~~~--~~~~i~l~tyfg~~~~~~~~~l 255 (765)
+.++.++.+.++++.++||+.||+|||.+... ++++ +.+.+...++++.+.. ....+.+|+|++ . .+.++.+
T Consensus 140 ~~i~~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~cg~-~-~~~~~~l 217 (306)
T cd00465 140 EYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIVHHSCYD-A-ADLLEEM 217 (306)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceEEEECCC-H-HHHHHHH
Confidence 99999999999999999999999999999877 3544 4444556666655432 124688899965 3 4679999
Q ss_pred hcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCccccc
Q 004263 256 TSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAV 335 (765)
Q Consensus 256 ~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h~P~ 335 (765)
.+++ +|++++|... +++..+++.++.++.|..||.++++.+. .+++.+.++++++.++. +.+++|+|++.+.+.
T Consensus 218 ~~~~-~d~~~~d~~~--~d~~~~~~~~~~~~~i~Ggv~~~~~~~~--~e~i~~~v~~~l~~~~~-~~il~~~cgi~~~~~ 291 (306)
T cd00465 218 IQLG-VDVISFDMTV--NEPKEAIEKVGEKKTLVGGVDPGYLPAT--DEECIAKVEELVERLGP-HYIINPDCGLGPDSD 291 (306)
T ss_pred HHhC-cceEeccccc--CCHHHHHHHhCCCEEEECCCCccccCCC--HHHHHHHHHHHHHHhCC-CeEEeCCCCCCCCCC
Confidence 9999 9999999876 2444444457766789999999876444 39999999999998875 899999999997644
Q ss_pred c
Q 004263 336 D 336 (765)
Q Consensus 336 ~ 336 (765)
.
T Consensus 292 ~ 292 (306)
T cd00465 292 Y 292 (306)
T ss_pred C
Confidence 3
No 41
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=99.72 E-value=1.4e-16 Score=174.28 Aligned_cols=191 Identities=17% Similarity=0.186 Sum_probs=159.3
Q ss_pred CCceEeeechhHHhhhccccCC------CC---HHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHH
Q 004263 552 RPMKGMLTGPVTILNWSFVRND------QP---RFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDF 622 (765)
Q Consensus 552 ~~vK~~ltGPvTll~~s~~~~~------~~---~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~ 622 (765)
.++++.+.||+|++.+....+. .+ ..++++.++..+.+.++.+.++|+++||++||.....+ .+++.
T Consensus 126 ~~v~g~~~gP~t~a~~l~g~~~~~~~~~~~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~----isp~~ 201 (330)
T cd03465 126 VPVIGAVGGPFTLASLLMGASKFLMLLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYISDPWASSSI----LSPED 201 (330)
T ss_pred eeeeccCCCHHHHHHHHHhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCC----CCHHH
Confidence 6899999999999987654321 12 36788999999999999999999999999999876532 46788
Q ss_pred HHHHHHHHHHHHHccCCC-CceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHHhhhcccCCceeccccccCC
Q 004263 623 YLKWAVHSFRITNCGVQD-TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIH 701 (765)
Q Consensus 623 ~l~~~v~a~~~~~~~v~~-~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~ 701 (765)
|.+++...++++++.++. +..+++|+| |+.+.+++.+.++++|++++|... ++..++.+-. ++.+..|.+|..
T Consensus 202 f~e~~~p~~k~i~~~i~~~g~~~~lH~c-G~~~~~~~~l~~~~~d~~~~d~~~-dl~~~~~~~g----~~~~i~G~id~~ 275 (330)
T cd03465 202 FKEFSLPYLKKVFDAIKALGGPVIHHNC-GDTAPILELMADLGADVFSIDVTV-DLAEAKKKVG----DKACLMGNLDPI 275 (330)
T ss_pred HHHHhhHHHHHHHHHHHHcCCceEEEEC-CCchhHHHHHHHhCCCeEeecccC-CHHHHHHHhC----CceEEEeCcChH
Confidence 999999999999998863 367899999 999899999999999999999644 4433332221 468999999997
Q ss_pred -CCCCCCHHHHHHHHHHHHhhcCC--CcEEEcCCCCCCCCChhhHHHHHHHHHHHHH
Q 004263 702 -SPRIPSTEEIADRINKMLAVLES--NILWVNPDCGLKTRKYSEVKPALSNMVAAAK 755 (765)
Q Consensus 702 -s~~ve~~eev~~~i~~a~~~i~~--~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~ 755 (765)
.....++|+|.+.++++++.+.. .+.++||+||+...++ .++|++|++|++
T Consensus 276 ~~l~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~~~~p---~enl~a~v~a~~ 329 (330)
T cd03465 276 DVLLNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIPPDTP---IENIKAMIDAVR 329 (330)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCC---HHHHHHHHHHHh
Confidence 67778999999999999998865 7899999999998777 699999999986
No 42
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=99.66 E-value=1.3e-15 Score=167.49 Aligned_cols=202 Identities=13% Similarity=0.094 Sum_probs=157.3
Q ss_pred hhHHHHHHhccC--CCceEeeechhHHhhhccccCC-----C----CHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccc
Q 004263 540 VFWSSMAQSMTK--RPMKGMLTGPVTILNWSFVRND-----Q----PRFETCYQIALAIKDEVEDLEKAGITVIQIDEAA 608 (765)
Q Consensus 540 ~~~~~~a~~~t~--~~vK~~ltGPvTll~~s~~~~~-----~----~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPa 608 (765)
++.++.+++..+ .|+++.++||+|++.+...... . ...++++.++..+.+.++.+.++|+++||+.+|.
T Consensus 124 l~ai~~l~~~~~~~~pv~g~v~GP~Tla~~l~g~~~~~~~~~~~pe~v~~ll~~i~~~~~~~~~~~~~~Gad~I~i~dp~ 203 (340)
T TIGR01463 124 LEAIKILRERYGDTHPIIGPMGGPFTLAQLMIGVSEFLSWISTDPDYAKAVLELALDFVIAYAKAMVEAGADVIAIADPF 203 (340)
T ss_pred HHHHHHHHHHcCCceeeeCCCCcHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCc
Confidence 566666665543 6899999999999986542211 1 1245677778899999999999999999999998
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHccCCC-CceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHHhhhcc
Q 004263 609 LREGLPLRKSEQDFYLKWAVHSFRITNCGVQD-TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGV 687 (765)
Q Consensus 609 L~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~-~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~ 687 (765)
....+ .+++.|.+++...++++++.++. +...++|+| |+...+++.+.++++|++++|... +++..+..-.
T Consensus 204 a~~~~----lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~C-G~~~~~~~~l~~~g~d~ls~d~~~-~l~~~~~~~g-- 275 (340)
T TIGR01463 204 ASSDL----ISPETYKEFGLPYQKRLFAYIKEIGGITVLHIC-GFTQPILRDIANNGCFGFSVDMKP-GMDHAKRVIG-- 275 (340)
T ss_pred cCccc----cCHHHHHHHHHHHHHHHHHHHHhcCCceEEEEC-CCchhhHHHHHHhCCCEEeecCCC-CHHHHHHHcC--
Confidence 64322 46788999999999999998753 345689999 888889999999999999999644 4543332211
Q ss_pred cCCceeccccccCCC-CCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHH
Q 004263 688 KYRAGIGPGVYDIHS-PRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLL 757 (765)
Q Consensus 688 ~~~~~l~~GVvd~~s-~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~ 757 (765)
++.+..|.+|... ....++|+|.+.++++++. ...++||+||+...++ .++|++|++|++..
T Consensus 276 --~~~~i~Gnidp~~ll~~gt~eeI~~~v~~~l~~---~~~Il~~gcgi~~~tp---~eni~a~v~a~~~~ 338 (340)
T TIGR01463 276 --GQASLVGNLSPFSTLMNGTPEKVKKLAKEVLYN---GGDIVMPGCDIDWMTP---LENLKAMIEACKSI 338 (340)
T ss_pred --CceEEEecCChHHHhcCCCHHHHHHHHHHHHHc---CCeEECCCCCCCCCCC---HHHHHHHHHHHHhc
Confidence 3566699998854 4457999999999999873 6789999999998777 89999999999863
No 43
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=99.66 E-value=1.7e-15 Score=166.55 Aligned_cols=202 Identities=16% Similarity=0.180 Sum_probs=159.4
Q ss_pred hhHHHHHHhcc--CCCceEeeechhHHhhhccccCC------CC---HHHHHHHHHHHHHHHHHHHHHcCCcEEEecccc
Q 004263 540 VFWSSMAQSMT--KRPMKGMLTGPVTILNWSFVRND------QP---RFETCYQIALAIKDEVEDLEKAGITVIQIDEAA 608 (765)
Q Consensus 540 ~~~~~~a~~~t--~~~vK~~ltGPvTll~~s~~~~~------~~---~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPa 608 (765)
++.++..++.. +.|+.+.++||+|++.+...... .. ..++++.++..+.+.++.+.++|+++||+++|.
T Consensus 124 leai~~l~~~~~~~~pv~g~v~gP~Tla~~l~g~~~~~~~l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I~i~d~~ 203 (339)
T PRK06252 124 LEAIKILKEKVGEEVPIIAGLTGPISLASSLMGPKNFLKWLIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVICIADPS 203 (339)
T ss_pred HHHHHHHHHHcCCcCceeCccCChHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 34444444433 37899999999999987653211 11 245677778888999999999999999999997
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHHhhhccc
Q 004263 609 LREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVK 688 (765)
Q Consensus 609 L~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~ 688 (765)
....+ .+++.|.+++...++++++.++.. ...+|+| |+...+++.+.++++|++++|... ++..++..-.
T Consensus 204 a~~~~----lsp~~f~ef~~p~~~~i~~~i~~~-~~ilH~c-G~~~~~l~~~~~~g~d~~~~d~~~-dl~~~~~~~g--- 273 (339)
T PRK06252 204 ASPEL----LGPKMFEEFVLPYLNKIIDEVKGL-PTILHIC-GDLTSILEEMADCGFDGISIDEKV-DVKTAKENVG--- 273 (339)
T ss_pred ccccc----cCHHHHHHHHHHHHHHHHHHhccC-CcEEEEC-CCchHHHHHHHhcCCCeeccCCCC-CHHHHHHHhC---
Confidence 65332 478899999999999999999754 6789999 988889999999999999999643 4433222111
Q ss_pred CCceeccccccC-CCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 004263 689 YRAGIGPGVYDI-HSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLR 758 (765)
Q Consensus 689 ~~~~l~~GVvd~-~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r 758 (765)
++.+..|.+|. ......++|+|.+.++++++. ...++||+||+.+.++ .+++++|++|++..+
T Consensus 274 -~~~~i~Gnidp~~~l~~gt~eeI~~~v~~~l~~---g~~Il~~gcgi~~~tp---~enl~a~v~a~~~~~ 337 (339)
T PRK06252 274 -DRAALIGNVSTSFTLLNGTPEKVKAEAKKCLED---GVDILAPGCGIAPKTP---LENIKAMVEARKEYY 337 (339)
T ss_pred -CCeEEEeccCcHHHhcCCCHHHHHHHHHHHHHc---CCCEEcCCCCCCCCCC---HHHHHHHHHHHHHhc
Confidence 46889999999 667789999999999999983 3569999999998888 899999999998764
No 44
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=99.51 E-value=2.8e-13 Score=148.25 Aligned_cols=198 Identities=19% Similarity=0.218 Sum_probs=154.7
Q ss_pred hhHHHHHHhc-c-CCCceEeeechhHHhhhccccCC--------C-CHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccc
Q 004263 540 VFWSSMAQSM-T-KRPMKGMLTGPVTILNWSFVRND--------Q-PRFETCYQIALAIKDEVEDLEKAGITVIQIDEAA 608 (765)
Q Consensus 540 ~~~~~~a~~~-t-~~~vK~~ltGPvTll~~s~~~~~--------~-~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPa 608 (765)
++.++..++. . +.|+.+.+.||+|++.+...... . ...++++.++..+.+.++.+.++|+++||+.+|.
T Consensus 115 ~eai~~l~~~~~~~~pvig~~~gP~Tla~~l~g~~~~~~~~~~~pe~~~~ll~~it~~~~~~~~~~~eaGad~i~i~d~~ 194 (326)
T cd03307 115 LEAIKILKEKYGEEVPVIGGMTGPASLASHLAGVENFLKWLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIITIADPT 194 (326)
T ss_pred HHHHHHHHHHcCCcceeeCCCCCHHHHHHHHHhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 3444444433 3 36899999999999986543211 0 1346777778888899999999999999999997
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHH-Hhhhcc
Q 004263 609 LREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLS-VFREGV 687 (765)
Q Consensus 609 L~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~-~~~~~~ 687 (765)
....+ .+++.|.+++...++++++.++. ..+.+|+| |+...+++.+.++++|++++|... +++..+ .+.
T Consensus 195 a~~~~----isp~~f~e~~~p~~k~i~~~i~~-~~~ilh~c-G~~~~~l~~~~~~g~d~~~~d~~~-dl~e~~~~~g--- 264 (326)
T cd03307 195 ASPEL----ISPEFYEEFALPYHKKIVKELHG-CPTILHIC-GNTTPILEYIAQCGFDGISVDEKV-DVKTAKEIVG--- 264 (326)
T ss_pred ccccc----cCHHHHHHHHHHHHHHHHHHHhc-CCcEEEEC-CCChhHHHHHHHcCCCeecccccC-CHHHHHHHcC---
Confidence 54321 47889999999999999999875 57889999 888889999999999999999633 443332 222
Q ss_pred cCCceeccccccCC-CCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHH
Q 004263 688 KYRAGIGPGVYDIH-SPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAK 755 (765)
Q Consensus 688 ~~~~~l~~GVvd~~-s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~ 755 (765)
++....|.+|.. .....++|++.+.++++++. ...++||+||+...++ .+++++|+++++
T Consensus 265 --~~~~i~Gnidp~~~l~~gt~e~i~~~~~~~l~~---g~~Il~~Gc~i~~~tp---~env~a~v~a~~ 325 (326)
T cd03307 265 --GRAALIGNVSPSQTLLNGTPEDVKAEARKCLED---GVDILAPGCGIAPRTP---LANLKAMVEARK 325 (326)
T ss_pred --CceEEEeCCChHHHhcCCCHHHHHHHHHHHHHc---cCCEecCcCCCCCCCC---HHHHHHHHHHHh
Confidence 357888999986 55678999999999999986 3479999999999888 889999999986
No 45
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=99.45 E-value=2.9e-12 Score=141.37 Aligned_cols=202 Identities=13% Similarity=0.088 Sum_probs=153.6
Q ss_pred hhHHHHHHhcc--CCCceEeeechhHHhhhcccc-C--C---------C---CHHHHHHHHHHHHHHHHHHHHHcCCcEE
Q 004263 540 VFWSSMAQSMT--KRPMKGMLTGPVTILNWSFVR-N--D---------Q---PRFETCYQIALAIKDEVEDLEKAGITVI 602 (765)
Q Consensus 540 ~~~~~~a~~~t--~~~vK~~ltGPvTll~~s~~~-~--~---------~---~~~e~~~~la~al~~ev~~L~~aG~~~I 602 (765)
++..+..++.. +.|+-+.+.||+|++...... . + . ...++++.++..+.+.++.+.++|+++|
T Consensus 124 leai~~l~~~~~~~~~vig~v~gP~Tla~~l~~~~~~~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i 203 (346)
T PRK00115 124 LEAVRLLRRELGGEVPLIGFAGAPWTLATYMVEGGGSKDYAKTKAMMYAEPELLHALLDKLADATIAYLNAQIEAGAQAV 203 (346)
T ss_pred HHHHHHHHHHhCCCceEEeeCCcHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 34444444433 368899999999999754321 0 0 0 1246777788888999998999999999
Q ss_pred EecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCC--ceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhH
Q 004263 603 QIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDT--TQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLL 680 (765)
Q Consensus 603 QiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~--~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L 680 (765)
|+-||.- .. .+++.|.+++...++++++.++.. ...++|.| |+...+++.+.++++|+++++... ++...
T Consensus 204 ~i~d~~~-~~-----lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~c-g~~~~~~~~~~~~~~~~is~d~~~-dl~~~ 275 (346)
T PRK00115 204 QIFDSWA-GA-----LSPADYREFVLPYMKRIVAELKREHPDVPVILFG-KGAGELLEAMAETGADVVGLDWTV-DLAEA 275 (346)
T ss_pred EEecCcc-cc-----CCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEc-CCcHHHHHHHHhcCCCEEeeCCCC-CHHHH
Confidence 9999832 21 568889999999999999888642 23578999 777889999999999999999643 44332
Q ss_pred HHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHH
Q 004263 681 SVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLL 757 (765)
Q Consensus 681 ~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~ 757 (765)
+..-. ++....|.+|. .....++|+|.+.++++++..+....++||+||+..-++ .+++++|+++++..
T Consensus 276 k~~~g----~~~~i~Gni~p-~ll~gt~e~i~~~~~~~i~~~~~~gfIl~~Gc~i~~~tp---~eNi~a~v~a~~~y 344 (346)
T PRK00115 276 RRRVG----DKKALQGNLDP-AVLLAPPEAIEEEVRAILDGGGGPGHIFNLGHGILPETP---PENVKALVEAVHEL 344 (346)
T ss_pred HHHcC----CCeEEEeCCCh-hHhcCCHHHHHHHHHHHHHHhCCCCeeeecCCcCCCCcC---HHHHHHHHHHHHHh
Confidence 22211 35899999998 344578999999999999987667899999999999888 88999999999863
No 46
>PLN02433 uroporphyrinogen decarboxylase
Probab=99.40 E-value=1.3e-11 Score=136.07 Aligned_cols=203 Identities=12% Similarity=0.047 Sum_probs=154.4
Q ss_pred hhHHHHHHhcc--CCCceEeeechhHHhhhccccCC------------C---CHHHHHHHHHHHHHHHHHHHHHcCCcEE
Q 004263 540 VFWSSMAQSMT--KRPMKGMLTGPVTILNWSFVRND------------Q---PRFETCYQIALAIKDEVEDLEKAGITVI 602 (765)
Q Consensus 540 ~~~~~~a~~~t--~~~vK~~ltGPvTll~~s~~~~~------------~---~~~e~~~~la~al~~ev~~L~~aG~~~I 602 (765)
++.++..++.. ..|+-+.+.||+|++........ . ...++++.++..+.+.++.+.++|+++|
T Consensus 117 leai~~l~~~~~~~v~iig~v~gP~Tla~~l~gg~~~~~~~~~~~~l~~~Pe~v~~ll~~it~~~~~~~~~~ieaGa~~i 196 (345)
T PLN02433 117 GEALKILRKEVGNEAAVLGFVGAPWTLATYIVEGGSSKNYKVIKKMAFTAPEVLHALLDKLTDAVIEYVDYQIDAGAQVV 196 (345)
T ss_pred HHHHHHHHHHhCCCCceeeeCCcHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 34444444332 26889999999999975543110 0 1246777778888888988889999999
Q ss_pred EecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCC---CceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhh
Q 004263 603 QIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQD---TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKL 679 (765)
Q Consensus 603 QiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~---~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~ 679 (765)
||.+|. ... .+++.|.+++....+++++.++. ...+.+|+| |+. .+++.+.++++|++++|... +++.
T Consensus 197 ~i~d~~-~~~-----lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~c-G~~-~~~~~~~~~~~~~i~~d~~~-dl~e 267 (345)
T PLN02433 197 QIFDSW-AGH-----LSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN-GSG-GLLERLAGTGVDVIGLDWTV-DMAD 267 (345)
T ss_pred EEecCc-ccc-----CCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC-CCH-HHHHHHHhcCCCEEEcCCCC-CHHH
Confidence 999993 222 57889999999999999888763 346899999 764 78999999999999999643 4433
Q ss_pred HHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 004263 680 LSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRT 759 (765)
Q Consensus 680 L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r~ 759 (765)
.+..-. ++.+..|.+|. .....++|+|.+.++++++..+.+..++||+||+...++ .+++++|+++++....
T Consensus 268 ~~~~~g----~~~~l~GNi~p-~ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~~tp---~eNi~a~v~av~~~~~ 339 (345)
T PLN02433 268 ARRRLG----SDVAVQGNVDP-AVLFGSKEAIEKEVRDVVKKAGPQGHILNLGHGVLVGTP---EENVAHFFDVARELRY 339 (345)
T ss_pred HHHHhC----CCeEEEeCCCc-hhhCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCC---HHHHHHHHHHHHHhCh
Confidence 222111 46889999997 345679999999999999987666699999999998888 8899999999987554
No 47
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=99.39 E-value=1e-11 Score=136.35 Aligned_cols=267 Identities=13% Similarity=0.125 Sum_probs=179.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeEEeccceeeecCC-ce--eeCcEEE--ccCC
Q 004263 459 SEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGS-RC--VKPPIIY--GDVS 533 (765)
Q Consensus 459 ~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~~~g~~~~~~t-~~--~~~P~i~--g~i~ 533 (765)
+-.++..--+...+..++.++..|.|.+.-+- |+. .-++.| |..+ . |+. .. +.+|+ . .++.
T Consensus 35 ~~~~~~~d~e~~~e~~~~~~~~~g~D~~~i~~----d~~-~~~ea~-G~~i------~-~~~~~~p~~~~~i-~~~~d~~ 100 (335)
T cd00717 35 SFLELCKNPELAAEVTLQPVRRFGVDAAIIFS----DIL-VPLEAM-GMDV------E-FVEGKGPVIPNPI-RTEADVD 100 (335)
T ss_pred CHHHHhCCHHHHHHHHHHHHHHhCCCEEEecc----ccc-ccHHHc-CCeE------E-eCCCCCCcCCCCC-CCHHHHH
Confidence 66666655666777789999999999554331 210 113333 2221 1 211 11 11111 1 0111
Q ss_pred C-----C---cccchhHHHHHHhccC--CCceEeeechhHHhhhccc--c-CC--------C----CHHHHHHHHHHHHH
Q 004263 534 R-----P---KAMTVFWSSMAQSMTK--RPMKGMLTGPVTILNWSFV--R-ND--------Q----PRFETCYQIALAIK 588 (765)
Q Consensus 534 ~-----~---~p~~~~~~~~a~~~t~--~~vK~~ltGPvTll~~s~~--~-~~--------~----~~~e~~~~la~al~ 588 (765)
. + -+..++.++..++..+ .|+-+.+.||+|++..... . .+ . ...++++.++..+.
T Consensus 101 ~~~~~~~~~~~~~~leai~~l~~~~~~~~~i~g~v~gP~Tla~~l~~~~~~~~~~~~~~~l~~~Pe~v~~~l~~it~~~~ 180 (335)
T cd00717 101 RLLVPDPEEELSYVYEAIKLTRKELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKKMMYTDPEAFHALLDKLTDATI 180 (335)
T ss_pred hccCCChhhhhHHHHHHHHHHHHHcCCCceEEeecCCHHHHHHHHHCCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 1 0 1222344444444332 6889999999999975432 1 01 0 12466777778888
Q ss_pred HHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCC--ceEEEEeccCChhHHHHHHHcCCcc
Q 004263 589 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDT--TQVHTHMCYSNFNDIIHSIMDMDAD 666 (765)
Q Consensus 589 ~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~--~~I~~H~C~g~~~~i~~~l~~l~~D 666 (765)
+.++.+.++|+++||+-||.- . -.+++.|.+++...++++++.++.. ....+|+| |+...+++.+.++++|
T Consensus 181 ~~~~~~ieaGad~i~i~d~~~-~-----~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~c-g~~~~~~~~~~~~~~~ 253 (335)
T cd00717 181 EYLKAQIEAGAQAVQIFDSWA-G-----ALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFA-KGAGGLLEDLAQLGAD 253 (335)
T ss_pred HHHHHHHHhCCCEEEEeCccc-c-----cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEc-CCCHHHHHHHHhcCCC
Confidence 888888899999999999832 2 1578899999999999999888642 23478888 5556899999999999
Q ss_pred EEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCCChhhHHH
Q 004263 667 VITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLES-NILWVNPDCGLKTRKYSEVKP 745 (765)
Q Consensus 667 ~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~-~~l~vsPdCGL~~~~~~~~~~ 745 (765)
+++++... ++...+..-. ++.+..|.+|.. ....++|+|.+.++++++..+. ...++||+||+..-++ .+
T Consensus 254 ~~s~d~~~-dl~e~k~~~g----~~~~i~Gni~p~-~l~~~~e~i~~~v~~~l~~~~~~~gfIl~~gc~i~~~tp---~e 324 (335)
T cd00717 254 VVGLDWRV-DLDEARKRLG----PKVALQGNLDPA-LLYAPKEAIEKEVKRILKAFGGAPGHIFNLGHGILPDTP---PE 324 (335)
T ss_pred EEEeCCCC-CHHHHHHHhC----CCeEEEeCCChh-hhcCCHHHHHHHHHHHHHHhCcCCCceeecCCcCCCCcC---HH
Confidence 99999643 4433222111 468889999984 4567889999999999998754 6899999999998888 78
Q ss_pred HHHHHHHHHH
Q 004263 746 ALSNMVAAAK 755 (765)
Q Consensus 746 kL~~mv~aa~ 755 (765)
++++|+++++
T Consensus 325 Ni~a~v~a~~ 334 (335)
T cd00717 325 NVKALVEAVH 334 (335)
T ss_pred HHHHHHHHHh
Confidence 8999999886
No 48
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=99.39 E-value=1.2e-11 Score=136.09 Aligned_cols=199 Identities=13% Similarity=0.117 Sum_probs=149.9
Q ss_pred hhHHHHHHhcc--CCCceEeeechhHHhhhccc-cC--C--------C----CHHHHHHHHHHHHHHHHHHHHHcCCcEE
Q 004263 540 VFWSSMAQSMT--KRPMKGMLTGPVTILNWSFV-RN--D--------Q----PRFETCYQIALAIKDEVEDLEKAGITVI 602 (765)
Q Consensus 540 ~~~~~~a~~~t--~~~vK~~ltGPvTll~~s~~-~~--~--------~----~~~e~~~~la~al~~ev~~L~~aG~~~I 602 (765)
++..+.+++.. ..|+-+.+.||+|++..... .. + . ...++++.++..+.+.++.+.++|+++|
T Consensus 118 leai~~l~~~~~~~~pi~g~~~gP~Tla~~l~~g~~~~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i 197 (338)
T TIGR01464 118 YEAIKLLREELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKRFMYQEPEVLHALLNKLTDATIEYLVEQVKAGAQAV 197 (338)
T ss_pred HHHHHHHHHHcCCCCceEEeCCchHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 44445554433 36889999999999975432 00 0 0 1245666777778888888889999999
Q ss_pred EecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCC--ceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhH
Q 004263 603 QIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDT--TQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLL 680 (765)
Q Consensus 603 QiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~--~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L 680 (765)
|+-||. .. -.+++.|.+++...++++++.++.. ...++|.| |+.+.+++.+.++++|++|++... ++...
T Consensus 198 ~i~d~~-~~-----~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~c-g~~~~~~~~~~~~~~~~~s~d~~~-dl~e~ 269 (338)
T TIGR01464 198 QIFDSW-AG-----ALSPEDFEEFVLPYLKKIIEEVKARLPNVPVILFA-KGAGHLLEELAETGADVVGLDWTV-DLKEA 269 (338)
T ss_pred EEECCc-cc-----cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEe-CCcHHHHHHHHhcCCCEEEeCCCC-CHHHH
Confidence 999983 22 1578899999999999999887632 23468999 677789999999999999999643 44322
Q ss_pred H-HhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcC-CCcEEEcCCCCCCCCChhhHHHHHHHHHHHHH
Q 004263 681 S-VFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE-SNILWVNPDCGLKTRKYSEVKPALSNMVAAAK 755 (765)
Q Consensus 681 ~-~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~-~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~ 755 (765)
+ .+. ++....|.+|.... ..++|+|.+.++++++..+ ....++||+||+..-++ .+++++|+++++
T Consensus 270 ~~~~~-----~~~~i~Gni~p~~l-~gt~e~i~~~v~~~l~~~~~~~g~Il~~Gc~i~~~tp---~eni~a~v~a~~ 337 (338)
T TIGR01464 270 RKRVG-----PGVAIQGNLDPAVL-YAPEEALEEKVEKILEAFGGKSRYIFNLGHGILPDTP---PENVKALVEYVH 337 (338)
T ss_pred HHHhC-----CCeeEEeCCChHHh-cCCHHHHHHHHHHHHHHhccCCCceecCCCcCCCCcC---HHHHHHHHHHHh
Confidence 2 222 35699999998444 6799999999999999864 45699999999999888 888999999886
No 49
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=99.36 E-value=8.7e-12 Score=137.29 Aligned_cols=271 Identities=19% Similarity=0.228 Sum_probs=174.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeEEeccceeeecCCc--eeeCcEEEc-c---
Q 004263 458 ISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSR--CVKPPIIYG-D--- 531 (765)
Q Consensus 458 i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~~~g~~~~~~t~--~~~~P~i~g-~--- 531 (765)
++-.++..--+...+..++.+++.|.|.+... .|. ...++.+++ .+ .+.... .+..|.+.- |
T Consensus 40 ~~~~~~~~~~~~~ae~~~~~~~~~~~D~~~~~----~d~-~~~aea~G~-~v------~~~~~~~P~~~~~~~~~eD~~~ 107 (343)
T PF01208_consen 40 ISFPEYCRDPEKMAEAQIKAYEKFGPDFIKIP----FDL-TVEAEALGC-EV------EFPEDDGPSVEEPIISPEDLDK 107 (343)
T ss_dssp SSHHHHCTSHHHHHHHHHHHHHHC--SEEE-S------T-THHHHGCTT-EE------EEETTTEEEESS---SHHHHHT
T ss_pred cchHHHhcCHHHHHHHHHHHHHhcCCCEEEec----Cce-eehHHHcCC-eE------EecCCCCCccccCcCCHHHHhh
Confidence 34555555556677788899999999998776 233 445555543 21 111111 122222211 1
Q ss_pred CCCCcc-------cchhHHHHHHhcc--CCCceEeeechhHHhhhcc---ccCCC---------CHHHHHHHHHHHHHHH
Q 004263 532 VSRPKA-------MTVFWSSMAQSMT--KRPMKGMLTGPVTILNWSF---VRNDQ---------PRFETCYQIALAIKDE 590 (765)
Q Consensus 532 i~~~~p-------~~~~~~~~a~~~t--~~~vK~~ltGPvTll~~s~---~~~~~---------~~~e~~~~la~al~~e 590 (765)
+..+.+ ..++.++.+++.. +.|+-+.+.||+|++.+.. ..... ...++++.++..+.+.
T Consensus 108 l~~~~~~~~~~~~~~leai~~l~~~~~~~~~v~~~~~gP~t~a~~l~~~~g~e~~~~~~~~~Pe~v~~ll~~~~~~~~~~ 187 (343)
T PF01208_consen 108 LKIPDPENEGRLPEVLEAIKILKEELGDDVPVIGTVFGPFTLASDLMEGRGFEEFLMDLYDDPEKVHELLDKITDFIIEY 187 (343)
T ss_dssp S--GGHHH-HHTHHHHHHHHHHHHHTTTSSEEEEEEE-HHHHHHHHHHSSS-HHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhHHHHHHHHHHHHHHhcCcEEEEecCchHHHHHHHHHcCCCHHHHHHHHHhCchhHHHHHHHHHHHHHHH
Confidence 222222 1234444444432 4688999999999998776 32221 1256788888899999
Q ss_pred HHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCC-c-eEEEEeccCChhHHHHHHHcCCccEE
Q 004263 591 VEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDT-T-QVHTHMCYSNFNDIIHSIMDMDADVI 668 (765)
Q Consensus 591 v~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~-~-~I~~H~C~g~~~~i~~~l~~l~~D~i 668 (765)
++.+.++|+++|++-+ +-... .+++.|.++....++++++.++.. . .+.+|+| |+...+++.+.++++|++
T Consensus 188 ~~~~~~~G~d~i~~~d-~~~~~-----isp~~f~e~~~P~~k~i~~~i~~~g~~~~~lH~c-G~~~~~~~~l~~~g~d~~ 260 (343)
T PF01208_consen 188 AKAQIEAGADGIFIFD-SSGSL-----ISPEMFEEFILPYLKKIIDAIKEAGKDPVILHIC-GNTTPILDDLADLGADVL 260 (343)
T ss_dssp HHHHHHTT-SEEEEEE-TTGGG-----S-HHHHHHHTHHHHHHHHHHHHHHETE-EEEEET-THG-GGHHHHHTSS-SEE
T ss_pred HHHHHHhCCCcccccc-cccCC-----CCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEC-CchHHHHHHHHhcCCCEE
Confidence 9999999999999888 32222 568889999999999999988642 3 7899999 998899999999999999
Q ss_pred EEecCCCCh-hhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhh-c-CCCcEEEcCCCCCCCCChhhHHH
Q 004263 669 TIENSRSDE-KLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAV-L-ESNILWVNPDCGLKTRKYSEVKP 745 (765)
Q Consensus 669 siE~~r~~~-~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~-i-~~~~l~vsPdCGL~~~~~~~~~~ 745 (765)
+++... ++ +..+.+. ++.+..|.+|..+....++|+|.+.++++++. + +....+++|+|++..-++ .+
T Consensus 261 ~~~~~~-~~~~~~~~~~-----~~~~l~Gni~~~~~l~gt~eei~~~v~~~i~~~~~~~~gfIl~~gc~ip~~~p---~e 331 (343)
T PF01208_consen 261 SVDEKV-DLAEAKRKLG-----DKIVLMGNIDPVSLLFGTPEEIEEEVKRLIEEGLAGGGGFILSPGCGIPPDTP---PE 331 (343)
T ss_dssp EE-TTS--HHHHHHHHT-----TSSEEEEEB-G-GGGGS-HHHHHHHHHHHHHHTHCTSSSEEBEBSS---TTS----HH
T ss_pred EEcCCC-CHHHHHHHhC-----CCeEEECCCCccccccCCHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCCcC---HH
Confidence 998533 54 4444333 57899999999543339999999999999993 4 468999999999998887 88
Q ss_pred HHHHHHHHHHH
Q 004263 746 ALSNMVAAAKL 756 (765)
Q Consensus 746 kL~~mv~aa~~ 756 (765)
+++.|+++++.
T Consensus 332 ni~a~~~a~~e 342 (343)
T PF01208_consen 332 NIKAMVEAVKE 342 (343)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 50
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=99.12 E-value=1.2e-09 Score=121.92 Aligned_cols=193 Identities=10% Similarity=0.078 Sum_probs=142.8
Q ss_pred CCceEeeechhH-HhhhccccCC------C---CHHHHHHHHHHHHHHHHHHHHHcCCcE-EEecccccccCCCCCCCCH
Q 004263 552 RPMKGMLTGPVT-ILNWSFVRND------Q---PRFETCYQIALAIKDEVEDLEKAGITV-IQIDEAALREGLPLRKSEQ 620 (765)
Q Consensus 552 ~~vK~~ltGPvT-ll~~s~~~~~------~---~~~e~~~~la~al~~ev~~L~~aG~~~-IQiDEPaL~~~l~l~~~~~ 620 (765)
.|+-+.++||+| ++.....-.. . ...++++.+++...+.+....++|++. |.+..|.-..++ .++
T Consensus 171 vpi~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~----lsp 246 (378)
T cd03308 171 LNAGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPF----LRP 246 (378)
T ss_pred cccceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCc----cCH
Confidence 689999999997 5533322111 0 235677888888888999899999994 555555543332 468
Q ss_pred HHHHHHHHHHHHHHHccCCC-CceEEEEeccCChhHHHHHHHcCCcc-EEEEecCCCChhhHHHhhhcccCCceeccccc
Q 004263 621 DFYLKWAVHSFRITNCGVQD-TTQVHTHMCYSNFNDIIHSIMDMDAD-VITIENSRSDEKLLSVFREGVKYRAGIGPGVY 698 (765)
Q Consensus 621 ~~~l~~~v~a~~~~~~~v~~-~~~I~~H~C~g~~~~i~~~l~~l~~D-~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVv 698 (765)
+.|.+++...++++++.++. +..+.+|.| |+...+++.+.+++++ +++++.. .++...+..-. ++....|.+
T Consensus 247 ~~f~ef~~P~~k~i~~~i~~~g~~~ilh~c-G~~~~~l~~l~~~g~~~v~~~~~~-~dl~~ak~~~g----~~~~i~GNl 320 (378)
T cd03308 247 KQFEKFYWPSFKKVVEGLAARGQRIFLFFE-GDWERYLEYLQELPKGKTVGLFEY-GDPKKVKEKLG----DKKCIAGGF 320 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEcC-CCcHHHHHHHHhcCCCcEEEcCCC-CCHHHHHHHhC----CCEEEEcCC
Confidence 89999999999999998863 367789999 9988899999999998 6665543 35433332211 468999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhcC-CCcEEEcCCCCCCCCChhhHHHHHHHHHHHHH
Q 004263 699 DIHSPRIPSTEEIADRINKMLAVLE-SNILWVNPDCGLKTRKYSEVKPALSNMVAAAK 755 (765)
Q Consensus 699 d~~s~~ve~~eev~~~i~~a~~~i~-~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~ 755 (765)
|...-...++|+|.+.++++++... ....++||+||+.+.++. -.++++.|+++++
T Consensus 321 ~p~~L~~Gt~e~i~~~v~~~l~~~~~~~gfIl~~gcgi~p~tp~-~~eNi~a~v~av~ 377 (378)
T cd03308 321 PTTLLKYGTPEECIDYVKELLDTLAPGGGFIFGTDKPIISADDA-KPENLIAVIEFVR 377 (378)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhCCCCCEEEeCCCcCCCCCCC-ChHHHHHHHHHHh
Confidence 9874445699999999999999876 467999999999876541 2578888888876
No 51
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=99.04 E-value=4.7e-09 Score=114.31 Aligned_cols=187 Identities=13% Similarity=0.088 Sum_probs=138.3
Q ss_pred CceEeeechhHHhhhccccCC---------CCHHHHHHHHHHHHHHHHHHHHHc-CCcEEEecccccccCCCCCCCCHHH
Q 004263 553 PMKGMLTGPVTILNWSFVRND---------QPRFETCYQIALAIKDEVEDLEKA-GITVIQIDEAALREGLPLRKSEQDF 622 (765)
Q Consensus 553 ~vK~~ltGPvTll~~s~~~~~---------~~~~e~~~~la~al~~ev~~L~~a-G~~~IQiDEPaL~~~l~l~~~~~~~ 622 (765)
+.-..+.||+|++.....-.. ....++++.+++.+.+.++...++ |+++||+-|+--...-++ .+++.
T Consensus 114 ~~~~~~~Gpf~~a~~l~g~e~~~~~l~~~PE~v~~lld~ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~--LSpe~ 191 (321)
T cd03309 114 IDVPLPGGVFERFRLRMSMEDALMALYEEPEAAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSF--ISPAT 191 (321)
T ss_pred eccCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCc--cCHHH
Confidence 445678999998865432111 123577888888888888888888 999999966433221111 46889
Q ss_pred HHHHHHHHHHHHHccCCC--CceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHH-hhhcccCCceecccccc
Q 004263 623 YLKWAVHSFRITNCGVQD--TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSV-FREGVKYRAGIGPGVYD 699 (765)
Q Consensus 623 ~l~~~v~a~~~~~~~v~~--~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~-~~~~~~~~~~l~~GVvd 699 (765)
|.+++...++++++.++. ...+.+|.| |+.+.+++.+.++++|+++++....++..++. +. ++....|.+|
T Consensus 192 f~efv~P~~krIi~~ik~~~g~piilH~c-G~~~~~l~~~~e~g~dvl~~d~~~~dl~eak~~~g-----~k~~l~GNlD 265 (321)
T cd03309 192 FREFILPRMQRIFDFLRSNTSALIVHHSC-GAAASLVPSMAEMGVDSWNVVMTANNTAELRRLLG-----DKVVLAGAID 265 (321)
T ss_pred HHHHHHHHHHHHHHHHHhccCCceEEEeC-CCcHHHHHHHHHcCCCEEEecCCCCCHHHHHHHhC-----CCeEEEcCCC
Confidence 999999999999988864 346899999 88878999999999999999964435433322 22 4678999999
Q ss_pred CCCCCCCC-HHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCCChhhHHHHH
Q 004263 700 IHSPRIPS-TEEIADRINKMLAVLES-NILWVNPDCGLKTRKYSEVKPAL 747 (765)
Q Consensus 700 ~~s~~ve~-~eev~~~i~~a~~~i~~-~~l~vsPdCGL~~~~~~~~~~kL 747 (765)
......++ +|++.+.++++++.++. ...+.+|+|++-.....+...++
T Consensus 266 p~~L~~~~t~E~i~~~v~~~l~~~g~~~~fIf~~~~~~~~~~~~~~~~~~ 315 (321)
T cd03309 266 DVALDTATWPEEDARGVAKAAAECAPIHPFISAPTAGLPFSIFPEVLRRV 315 (321)
T ss_pred hHHhcCCCCHHHHHHHHHHHHHHhCCCCCEEeCccCCCCcccCHHHHHHH
Confidence 76544444 89999999999999887 89999999999876554444443
No 52
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=98.98 E-value=1.8e-08 Score=109.96 Aligned_cols=203 Identities=14% Similarity=0.107 Sum_probs=148.9
Q ss_pred hhHHHHHHhccC--CCceEeeechhHHhhhccccC---CC------------CHHHHHHHHHHHHHHHHHHHHHcCCcEE
Q 004263 540 VFWSSMAQSMTK--RPMKGMLTGPVTILNWSFVRN---DQ------------PRFETCYQIALAIKDEVEDLEKAGITVI 602 (765)
Q Consensus 540 ~~~~~~a~~~t~--~~vK~~ltGPvTll~~s~~~~---~~------------~~~e~~~~la~al~~ev~~L~~aG~~~I 602 (765)
++.++.+++..+ .|+-|-.-||+|++...-... +. ....+++.++++..+.++...++|++.|
T Consensus 127 ~~ai~~lrekl~~~~pLIgf~gsP~TlAsymieg~~s~~~~~~k~~m~~~P~~~~~ll~kltd~~i~Yl~~qi~aGAdav 206 (352)
T COG0407 127 LDAIKLLREKLGGEVPLIGFAGSPWTLASYLIEGGGSKDFSKTKAMMYTEPDAVHALLDKLTDAVIEYLKAQIEAGADAV 206 (352)
T ss_pred HHHHHHHHHHcCCCCCeEEecCCHHHHHHHHHcCCCcccHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 444455543333 688999999999997543211 10 1357888899999999999999999999
Q ss_pred EecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCC--CceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhH
Q 004263 603 QIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQD--TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLL 680 (765)
Q Consensus 603 QiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~--~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L 680 (765)
||.+.- ...+. ..+|.+++...-.++.+.++. ....++|.| ++....++.+.++++|++|+|-.. +++.-
T Consensus 207 qifDsW-~g~l~-----~~~~~~f~~~~~~~i~~~vk~~~~~~pii~f~-~ga~~~l~~m~~~g~d~l~vdw~v-~l~~a 278 (352)
T COG0407 207 QIFDSW-AGVLS-----MIDYDEFVLPYMKRIVREVKEVKGGVPVIHFC-KGAGHLLEDMAKTGFDVLGVDWRV-DLKEA 278 (352)
T ss_pred Eeeccc-cccCC-----cccHHHHhhhHHHHHHHHHHHhCCCCcEEEEC-CCcHHHHHHHHhcCCcEEeecccc-CHHHH
Confidence 999974 22222 234666777777777776652 223589999 666788999999999999999534 33222
Q ss_pred HHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 004263 681 SVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLES-NILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLR 758 (765)
Q Consensus 681 ~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~-~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r 758 (765)
+.... ++...-|.+|. .....+.+.|.+.+++.++.... +.-++|++||+.+.++ .++++.||++++.+.
T Consensus 279 ~~~~~----~~~~lqGNldP-~lL~~~~~~i~~~~~~iL~~~~~~~~~IfnlGhGI~P~tp---~e~v~~lve~v~~~~ 349 (352)
T COG0407 279 KKRLG----DKVALQGNLDP-ALLYAPPEAIKEEVKRILEDGGDGSGYIFNLGHGILPETP---PENVKALVEAVHEYS 349 (352)
T ss_pred HHHhC----CCceEEeccCh-HhhcCCHHHHHHHHHHHHHHhccCCCceecCCCCcCCCCC---HHHHHHHHHHHHHhc
Confidence 22221 33578899998 77778889999999999887543 5899999999999888 889999999998764
No 53
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=98.94 E-value=1.4e-08 Score=111.29 Aligned_cols=171 Identities=16% Similarity=0.200 Sum_probs=129.6
Q ss_pred CCCceEeehHHHHhhhccCC-----CCcCCCCCH---HHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCC-ChH-H
Q 004263 149 METVPVLVGPVSYLLLSKPA-----KGVEKSFSL---LSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDL-DSH-K 218 (765)
Q Consensus 149 ~~~K~vl~GP~T~l~l~~~~-----~~y~~~~~~---~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~-~~~-~ 218 (765)
.+++..+.||+|++...... .-|. ++ .++++.+++...+.++.+.++|++.||++||.....+ +++ .
T Consensus 126 ~~v~g~~~gP~t~a~~l~g~~~~~~~~~~---~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f 202 (330)
T cd03465 126 VPVIGAVGGPFTLASLLMGASKFLMLLYT---DPELVHKLLEKCTEFIIRYADALIEAGADGIYISDPWASSSILSPEDF 202 (330)
T ss_pred eeeeccCCCHHHHHHHHHhHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHH
Confidence 56789999999998532210 1121 34 6788899999999999999999999999999776543 443 3
Q ss_pred HH----HHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEee
Q 004263 219 LQ----AFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVD 294 (765)
Q Consensus 219 ~~----~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVd 294 (765)
.+ .+++.++.+.+. ...+.+|.| |+. .++++.+.+++ +|++++|... ++..+++.++ ++....|-||
T Consensus 203 ~e~~~p~~k~i~~~i~~~--g~~~~lH~c-G~~-~~~~~~l~~~~-~d~~~~d~~~---dl~~~~~~~g-~~~~i~G~id 273 (330)
T cd03465 203 KEFSLPYLKKVFDAIKAL--GGPVIHHNC-GDT-APILELMADLG-ADVFSIDVTV---DLAEAKKKVG-DKACLMGNLD 273 (330)
T ss_pred HHHhhHHHHHHHHHHHHc--CCceEEEEC-CCc-hhHHHHHHHhC-CCeEeecccC---CHHHHHHHhC-CceEEEeCcC
Confidence 33 334444444331 246788989 888 78899999999 9999998764 6666766564 4678889998
Q ss_pred CC-CCCcCCHHHHHHHHHHHhhhcCC--CcEEEeCCCCCc
Q 004263 295 GR-NIWANDLASSLTTLQDLAGTVGK--DKVVVSTSCSLL 331 (765)
Q Consensus 295 gr-n~~~ed~~~~~~~l~~~~~~~~~--~~l~vspsC~L~ 331 (765)
.. .....+.+++.+.++++++.++. .+.+++|.|++.
T Consensus 274 ~~~~l~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~ 313 (330)
T cd03465 274 PIDVLLNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIP 313 (330)
T ss_pred hHHhhcCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCC
Confidence 87 67778999999999999998765 679999999975
No 54
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=98.63 E-value=1e-06 Score=97.14 Aligned_cols=183 Identities=11% Similarity=0.123 Sum_probs=123.2
Q ss_pred chHHHHHHHH-cC--CCCceEeehHHHHhhhccCC----C-CcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeecc
Q 004263 137 AVQEYKEAKA-LG--METVPVLVGPVSYLLLSKPA----K-GVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEP 208 (765)
Q Consensus 137 ~~~e~~~a~~-~g--~~~K~vl~GP~T~l~l~~~~----~-~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP 208 (765)
.++..+.+++ +| .+++..+.||+|++...... . .+...-...++++.++++..+.++.+.++|+..||+.||
T Consensus 123 ~l~ai~~l~~~~~~~~pv~g~v~GP~Tla~~l~g~~~~~~~~~~~pe~v~~ll~~i~~~~~~~~~~~~~~Gad~I~i~dp 202 (340)
T TIGR01463 123 VLEAIKILRERYGDTHPIIGPMGGPFTLAQLMIGVSEFLSWISTDPDYAKAVLELALDFVIAYAKAMVEAGADVIAIADP 202 (340)
T ss_pred HHHHHHHHHHHcCCceeeeCCCCcHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCC
Confidence 4555555554 33 57788899999987521110 0 111000123567777788889999999999999999999
Q ss_pred ccccC-CChHH-H----HHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhC
Q 004263 209 TLVLD-LDSHK-L----QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEF 282 (765)
Q Consensus 209 ~L~~d-~~~~~-~----~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~ 282 (765)
.-..+ ++++. . ..+++.++.+.. .. ....+|.| |+. ...++.+.+++ +|++++|... +++..++.+
T Consensus 203 ~a~~~~lsp~~f~e~~~p~~k~i~~~i~~-~g-~~~ilH~C-G~~-~~~~~~l~~~g-~d~ls~d~~~---~l~~~~~~~ 274 (340)
T TIGR01463 203 FASSDLISPETYKEFGLPYQKRLFAYIKE-IG-GITVLHIC-GFT-QPILRDIANNG-CFGFSVDMKP---GMDHAKRVI 274 (340)
T ss_pred ccCccccCHHHHHHHHHHHHHHHHHHHHh-cC-CceEEEEC-CCc-hhhHHHHHHhC-CCEEeecCCC---CHHHHHHHc
Confidence 75433 44442 2 333444444432 11 23456767 767 67899999999 9999988654 466555546
Q ss_pred CCCCEEEEEEeeCC-CCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 004263 283 PLGKYLFAGVVDGR-NIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (765)
Q Consensus 283 p~~k~l~lGvVdgr-n~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~ 331 (765)
+ ++.+..|-||.. .....+++++.+.++++.+. .+.+++|.||+.
T Consensus 275 g-~~~~i~Gnidp~~ll~~gt~eeI~~~v~~~l~~---~~~Il~~gcgi~ 320 (340)
T TIGR01463 275 G-GQASLVGNLSPFSTLMNGTPEKVKKLAKEVLYN---GGDIVMPGCDID 320 (340)
T ss_pred C-CceEEEecCChHHHhcCCCHHHHHHHHHHHHHc---CCeEECCCCCCC
Confidence 4 567778999874 34457999999999998872 478999999996
No 55
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=98.60 E-value=1.1e-06 Score=96.72 Aligned_cols=173 Identities=13% Similarity=0.154 Sum_probs=120.8
Q ss_pred CCCceEeehHHHHhhhccC-CCCcCC-CCCH---HHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccC-CChHH-HHH
Q 004263 149 METVPVLVGPVSYLLLSKP-AKGVEK-SFSL---LSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLD-LDSHK-LQA 221 (765)
Q Consensus 149 ~~~K~vl~GP~T~l~l~~~-~~~y~~-~~~~---~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d-~~~~~-~~~ 221 (765)
.++...+.||+|++..... .+.+.. -.++ .++++.+.+...+.++.+.++|++.||++||.-..+ ++++. .+.
T Consensus 138 ~pv~g~v~gP~Tla~~l~g~~~~~~~l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef 217 (339)
T PRK06252 138 VPIIAGLTGPISLASSLMGPKNFLKWLIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEF 217 (339)
T ss_pred CceeCccCChHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHH
Confidence 6788999999998752111 011100 0023 346777777888999999999999999999965533 44443 333
Q ss_pred HHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeC-CCCCc
Q 004263 222 FSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDG-RNIWA 300 (765)
Q Consensus 222 ~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdg-rn~~~ 300 (765)
....++++.+.+......+|.| |+. ...++.+.+++ +|++++|.. .++...++.++ ++....|-||. .....
T Consensus 218 ~~p~~~~i~~~i~~~~~ilH~c-G~~-~~~l~~~~~~g-~d~~~~d~~---~dl~~~~~~~g-~~~~i~Gnidp~~~l~~ 290 (339)
T PRK06252 218 VLPYLNKIIDEVKGLPTILHIC-GDL-TSILEEMADCG-FDGISIDEK---VDVKTAKENVG-DRAALIGNVSTSFTLLN 290 (339)
T ss_pred HHHHHHHHHHHhccCCcEEEEC-CCc-hHHHHHHHhcC-CCeeccCCC---CCHHHHHHHhC-CCeEEEeccCcHHHhcC
Confidence 3344444444322113556666 777 77899999999 999998864 36666665564 46788899999 77778
Q ss_pred CCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 004263 301 NDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (765)
Q Consensus 301 ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~ 331 (765)
.+++++.+.++++++. | ..+++|.||+.
T Consensus 291 gt~eeI~~~v~~~l~~-g--~~Il~~gcgi~ 318 (339)
T PRK06252 291 GTPEKVKAEAKKCLED-G--VDILAPGCGIA 318 (339)
T ss_pred CCHHHHHHHHHHHHHc-C--CCEEcCCCCCC
Confidence 9999999999999873 3 46999999985
No 56
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=98.21 E-value=2.6e-05 Score=85.56 Aligned_cols=184 Identities=13% Similarity=0.169 Sum_probs=121.5
Q ss_pred hHHHHHHH-HcC--CCCceEeehHHHHhhhccCCC-C----cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccc
Q 004263 138 VQEYKEAK-ALG--METVPVLVGPVSYLLLSKPAK-G----VEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPT 209 (765)
Q Consensus 138 ~~e~~~a~-~~g--~~~K~vl~GP~T~l~l~~~~~-~----y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~ 209 (765)
++..+..+ ++| +++-..+.||+|++......+ . |...-.-.++++.+.+...+.++.+.++|++.||+.+|.
T Consensus 115 ~eai~~l~~~~~~~~pvig~~~gP~Tla~~l~g~~~~~~~~~~~pe~~~~ll~~it~~~~~~~~~~~eaGad~i~i~d~~ 194 (326)
T cd03307 115 LEAIKILKEKYGEEVPVIGGMTGPASLASHLAGVENFLKWLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIITIADPT 194 (326)
T ss_pred HHHHHHHHHHcCCcceeeCCCCCHHHHHHHHHhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 44444443 333 567888899999875211100 1 100001245777777788888998899999999999996
Q ss_pred cccC-CChHH-HHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCE
Q 004263 210 LVLD-LDSHK-LQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKY 287 (765)
Q Consensus 210 L~~d-~~~~~-~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~ 287 (765)
-... ++++. .+.....++++.+......+.+|.| |+. ...++.+.+++ +|++++|.. .+++..++.++ ++.
T Consensus 195 a~~~~isp~~f~e~~~p~~k~i~~~i~~~~~ilh~c-G~~-~~~l~~~~~~g-~d~~~~d~~---~dl~e~~~~~g-~~~ 267 (326)
T cd03307 195 ASPELISPEFYEEFALPYHKKIVKELHGCPTILHIC-GNT-TPILEYIAQCG-FDGISVDEK---VDVKTAKEIVG-GRA 267 (326)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHhcCCcEEEEC-CCC-hhHHHHHHHcC-CCeeccccc---CCHHHHHHHcC-Cce
Confidence 5443 25443 3333333344433321123556666 777 67899999999 999998854 36766665564 467
Q ss_pred EEEEEeeCC-CCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 004263 288 LFAGVVDGR-NIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (765)
Q Consensus 288 l~lGvVdgr-n~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~ 331 (765)
...|=+|.. ..-..+++++.+.++++++. | ..+++|.|++.
T Consensus 268 ~i~Gnidp~~~l~~gt~e~i~~~~~~~l~~-g--~~Il~~Gc~i~ 309 (326)
T cd03307 268 ALIGNVSPSQTLLNGTPEDVKAEARKCLED-G--VDILAPGCGIA 309 (326)
T ss_pred EEEeCCChHHHhcCCCHHHHHHHHHHHHHc-c--CCEecCcCCCC
Confidence 778999885 56678999999999999875 3 37899999984
No 57
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=98.13 E-value=5.3e-05 Score=83.58 Aligned_cols=176 Identities=15% Similarity=0.168 Sum_probs=111.9
Q ss_pred CCCceEeehHHHHhhhcc---C-CC----CcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHH-
Q 004263 149 METVPVLVGPVSYLLLSK---P-AK----GVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKL- 219 (765)
Q Consensus 149 ~~~K~vl~GP~T~l~l~~---~-~~----~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~- 219 (765)
.++=..+.||+|++..-. . .. -|.+.-.-.++++.+.+...+.++.+.++|++.|++-+ ....-++++..
T Consensus 137 ~~v~~~~~gP~t~a~~l~~~~g~e~~~~~~~~~Pe~v~~ll~~~~~~~~~~~~~~~~~G~d~i~~~d-~~~~~isp~~f~ 215 (343)
T PF01208_consen 137 VPVIGTVFGPFTLASDLMEGRGFEEFLMDLYDDPEKVHELLDKITDFIIEYAKAQIEAGADGIFIFD-SSGSLISPEMFE 215 (343)
T ss_dssp SEEEEEEE-HHHHHHHHHHSSS-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-TTGGGS-HHHHH
T ss_pred EEEEecCchHHHHHHHHHcCCCHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccccc-cccCCCCHHHHH
Confidence 455667899999985322 1 10 11000012468888888899999999999999999998 44434565543
Q ss_pred ----HHHHHHHHHHHccCCCC-cEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEee
Q 004263 220 ----QAFSDAYSELQSSLSGL-NVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVD 294 (765)
Q Consensus 220 ----~~~~~~y~~l~~~~~~~-~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVd 294 (765)
..+++.++.+.+. .. .+++|+| |+. ...++.+.+++ +|++++|.. .++....+.+. ++....|=||
T Consensus 216 e~~~P~~k~i~~~i~~~--g~~~~~lH~c-G~~-~~~~~~l~~~g-~d~~~~~~~---~~~~~~~~~~~-~~~~l~Gni~ 286 (343)
T PF01208_consen 216 EFILPYLKKIIDAIKEA--GKDPVILHIC-GNT-TPILDDLADLG-ADVLSVDEK---VDLAEAKRKLG-DKIVLMGNID 286 (343)
T ss_dssp HHTHHHHHHHHHHHHHH--ETE-EEEEET-THG--GGHHHHHTSS--SEEEE-TT---S-HHHHHHHHT-TSSEEEEEB-
T ss_pred HHHHHHHHHHHHHHHHh--CCCceEEEEC-Cch-HHHHHHHHhcC-CCEEEEcCC---CCHHHHHHHhC-CCeEEECCCC
Confidence 2334444444332 23 6788888 877 78999999999 999998743 35644444465 5788899999
Q ss_pred CCCCCcCCHHHHHHHHHHHhhh--cCCCcEEEeCCCCCccccccc
Q 004263 295 GRNIWANDLASSLTTLQDLAGT--VGKDKVVVSTSCSLLHTAVDL 337 (765)
Q Consensus 295 grn~~~ed~~~~~~~l~~~~~~--~~~~~l~vspsC~L~h~P~~~ 337 (765)
....-.-+.+++.+.++++++. -+..+.+++|+|++ |.++
T Consensus 287 ~~~~l~gt~eei~~~v~~~i~~~~~~~~gfIl~~gc~i---p~~~ 328 (343)
T PF01208_consen 287 PVSLLFGTPEEIEEEVKRLIEEGLAGGGGFILSPGCGI---PPDT 328 (343)
T ss_dssp G-GGGGS-HHHHHHHHHHHHHHTHCTSSSEEBEBSS------TTS
T ss_pred ccccccCCHHHHHHHHHHHHHHhcCCCCCEEEeCCCcC---CCCc
Confidence 9555559999999999999883 34578999999996 5554
No 58
>PLN02433 uroporphyrinogen decarboxylase
Probab=98.07 E-value=0.00015 Score=80.13 Aligned_cols=170 Identities=14% Similarity=0.174 Sum_probs=116.2
Q ss_pred CCCceEeehHHHHhhh-cc--CCC--------CcCCCCCH---HHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCC
Q 004263 149 METVPVLVGPVSYLLL-SK--PAK--------GVEKSFSL---LSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDL 214 (765)
Q Consensus 149 ~~~K~vl~GP~T~l~l-~~--~~~--------~y~~~~~~---~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~ 214 (765)
+++=..+.||+|.+.. .. .++ -|. ++ .++++.+++...+.++...++|+..||+.|| ++.-+
T Consensus 131 v~iig~v~gP~Tla~~l~gg~~~~~~~~~~~~l~~---~Pe~v~~ll~~it~~~~~~~~~~ieaGa~~i~i~d~-~~~~l 206 (345)
T PLN02433 131 AAVLGFVGAPWTLATYIVEGGSSKNYKVIKKMAFT---APEVLHALLDKLTDAVIEYVDYQIDAGAQVVQIFDS-WAGHL 206 (345)
T ss_pred CceeeeCCcHHHHHHHHHcCCCCccHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecC-ccccC
Confidence 4556778999998752 11 000 010 22 3456666666677777778899999999999 55556
Q ss_pred ChHHHHH-----HHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEE
Q 004263 215 DSHKLQA-----FSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLF 289 (765)
Q Consensus 215 ~~~~~~~-----~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~ 289 (765)
+++.-+. +++.++.+....+...++++.| |. ...++.+.+++ ++++++|.. .++...++.++ ++.+.
T Consensus 207 sp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~c-G~--~~~~~~~~~~~-~~~i~~d~~---~dl~e~~~~~g-~~~~l 278 (345)
T PLN02433 207 SPVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN-GS--GGLLERLAGTG-VDVIGLDWT---VDMADARRRLG-SDVAV 278 (345)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC-CC--HHHHHHHHhcC-CCEEEcCCC---CCHHHHHHHhC-CCeEE
Confidence 6654333 3444444433111235677776 43 35789999999 999999875 45666665564 57888
Q ss_pred EEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 004263 290 AGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (765)
Q Consensus 290 lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~ 331 (765)
.|=||. ....-+.+++.+.++++++..+....+++|.|++.
T Consensus 279 ~GNi~p-~ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~ 319 (345)
T PLN02433 279 QGNVDP-AVLFGSKEAIEKEVRDVVKKAGPQGHILNLGHGVL 319 (345)
T ss_pred EeCCCc-hhhCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC
Confidence 897776 45577899999999999987665569999999985
No 59
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=97.89 E-value=0.0005 Score=75.82 Aligned_cols=185 Identities=15% Similarity=0.150 Sum_probs=117.8
Q ss_pred chHHHHHHHH-cC--CCCceEeehHHHHhh-hcc--CCCCcCC-----CCCH---HHHHHHHHHHHHHHHHHHHHcCCCe
Q 004263 137 AVQEYKEAKA-LG--METVPVLVGPVSYLL-LSK--PAKGVEK-----SFSL---LSLIDKIIPVYKEVVAELKAAGATW 202 (765)
Q Consensus 137 ~~~e~~~a~~-~g--~~~K~vl~GP~T~l~-l~~--~~~~y~~-----~~~~---~~ll~~L~~~y~~~l~~L~~~G~~~ 202 (765)
.++..+.+++ ++ .++=..+.||+|++. +.. ....+.. -.++ .++++.+++...+.++.+.++|++.
T Consensus 117 ~leai~~l~~~~~~~~pi~g~~~gP~Tla~~l~~g~~~~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~ 196 (338)
T TIGR01464 117 VYEAIKLLREELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKRFMYQEPEVLHALLNKLTDATIEYLVEQVKAGAQA 196 (338)
T ss_pred HHHHHHHHHHHcCCCCceEEeCCchHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 3444444443 32 455677889999875 221 0000000 0022 3456666666777788788899999
Q ss_pred EEeeccccccCCChHHHH-----HHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhh
Q 004263 203 IQFDEPTLVLDLDSHKLQ-----AFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDL 277 (765)
Q Consensus 203 VQiDEP~L~~d~~~~~~~-----~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~ 277 (765)
||+-|| ++.-++++..+ .+++.++.+.+..+...+ ++-| |+. ...++.+.+++ ++++++|.. .++..
T Consensus 197 i~i~d~-~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~i-lh~c-g~~-~~~~~~~~~~~-~~~~s~d~~---~dl~e 268 (338)
T TIGR01464 197 VQIFDS-WAGALSPEDFEEFVLPYLKKIIEEVKARLPNVPV-ILFA-KGA-GHLLEELAETG-ADVVGLDWT---VDLKE 268 (338)
T ss_pred EEEECC-ccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-EEEe-CCc-HHHHHHHHhcC-CCEEEeCCC---CCHHH
Confidence 999999 44445655433 334444444332111222 3333 556 67899999999 999999964 45666
Q ss_pred HhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcC-CCcEEEeCCCCCc
Q 004263 278 IKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVG-KDKVVVSTSCSLL 331 (765)
Q Consensus 278 l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~-~~~l~vspsC~L~ 331 (765)
.++.++ +|....|=||..-. ..+.+++.+.++++++..+ ....++||.|++.
T Consensus 269 ~~~~~~-~~~~i~Gni~p~~l-~gt~e~i~~~v~~~l~~~~~~~g~Il~~Gc~i~ 321 (338)
T TIGR01464 269 ARKRVG-PGVAIQGNLDPAVL-YAPEEALEEKVEKILEAFGGKSRYIFNLGHGIL 321 (338)
T ss_pred HHHHhC-CCeeEEeCCChHHh-cCCHHHHHHHHHHHHHHhccCCCceecCCCcCC
Confidence 665564 46777888887544 6688999999999998764 3459999999986
No 60
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=97.79 E-value=0.00086 Score=74.25 Aligned_cols=184 Identities=14% Similarity=0.146 Sum_probs=118.8
Q ss_pred hHHHHHHHH-cC--CCCceEeehHHHHhh-hcc--CCCCcCC-----CCCH---HHHHHHHHHHHHHHHHHHHHcCCCeE
Q 004263 138 VQEYKEAKA-LG--METVPVLVGPVSYLL-LSK--PAKGVEK-----SFSL---LSLIDKIIPVYKEVVAELKAAGATWI 203 (765)
Q Consensus 138 ~~e~~~a~~-~g--~~~K~vl~GP~T~l~-l~~--~~~~y~~-----~~~~---~~ll~~L~~~y~~~l~~L~~~G~~~V 203 (765)
++..+..++ .| +++=..+.||+|++. +.. ...++.. -.++ .++++.+++...+.++.+.++|++.|
T Consensus 124 leai~~l~~~~~~~~~vig~v~gP~Tla~~l~~~~~~~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i 203 (346)
T PRK00115 124 LEAVRLLRRELGGEVPLIGFAGAPWTLATYMVEGGGSKDYAKTKAMMYAEPELLHALLDKLADATIAYLNAQIEAGAQAV 203 (346)
T ss_pred HHHHHHHHHHhCCCceEEeeCCcHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 444444443 32 455566789999975 321 1001100 0022 34666667777778888888999999
Q ss_pred EeeccccccCCChHHHHHH-----HHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhH
Q 004263 204 QFDEPTLVLDLDSHKLQAF-----SDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLI 278 (765)
Q Consensus 204 QiDEP~L~~d~~~~~~~~~-----~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l 278 (765)
|+-|| ++.-++++..+.| ++.++.+....+... ++|-| |+. ...++.+.+++ ++++++|.. .++...
T Consensus 204 ~i~d~-~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~-ilh~c-g~~-~~~~~~~~~~~-~~~is~d~~---~dl~~~ 275 (346)
T PRK00115 204 QIFDS-WAGALSPADYREFVLPYMKRIVAELKREHPDVP-VILFG-KGA-GELLEAMAETG-ADVVGLDWT---VDLAEA 275 (346)
T ss_pred EEecC-ccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEc-CCc-HHHHHHHHhcC-CCEEeeCCC---CCHHHH
Confidence 99999 4444666543333 334444432111112 23333 556 66789999999 999999964 456666
Q ss_pred hhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 004263 279 KTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (765)
Q Consensus 279 ~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~ 331 (765)
++.++ ++....|=||. ..-..+++++.+.++++++..+....+++|.|++.
T Consensus 276 k~~~g-~~~~i~Gni~p-~ll~gt~e~i~~~~~~~i~~~~~~gfIl~~Gc~i~ 326 (346)
T PRK00115 276 RRRVG-DKKALQGNLDP-AVLLAPPEAIEEEVRAILDGGGGPGHIFNLGHGIL 326 (346)
T ss_pred HHHcC-CCeEEEeCCCh-hHhcCCHHHHHHHHHHHHHHhCCCCeeeecCCcCC
Confidence 66565 46788898887 45567899999999999987655679999999986
No 61
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=97.59 E-value=0.0013 Score=72.56 Aligned_cols=173 Identities=16% Similarity=0.155 Sum_probs=113.3
Q ss_pred CCCceEeehHHHHhhhcc---CCCCcCC---C--CCH---HHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChH
Q 004263 149 METVPVLVGPVSYLLLSK---PAKGVEK---S--FSL---LSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSH 217 (765)
Q Consensus 149 ~~~K~vl~GP~T~l~l~~---~~~~y~~---~--~~~---~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~ 217 (765)
.++=.++.||+|.+.... ...++.. . .++ .++++.+++...+.++.+.++|++.||+-|| ++.-++++
T Consensus 129 ~~i~g~v~gP~Tla~~l~~~~~~~~~~~~~~~l~~~Pe~v~~~l~~it~~~~~~~~~~ieaGad~i~i~d~-~~~~lsp~ 207 (335)
T cd00717 129 VPLIGFAGAPWTLASYMIEGGGSKDFAKAKKMMYTDPEAFHALLDKLTDATIEYLKAQIEAGAQAVQIFDS-WAGALSPE 207 (335)
T ss_pred ceEEeecCCHHHHHHHHHCCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCc-ccccCCHH
Confidence 455667789999875321 1011000 0 022 3466666666777777778899999999999 44445655
Q ss_pred HHH-----HHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEE
Q 004263 218 KLQ-----AFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGV 292 (765)
Q Consensus 218 ~~~-----~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGv 292 (765)
..+ .+++.++.+....+...+ +|-| |+- ...++.+.+++ ++++++|.. .++...++.++ +|.+..|=
T Consensus 208 ~f~ef~~P~~k~i~~~i~~~~~~~~i-lh~c-g~~-~~~~~~~~~~~-~~~~s~d~~---~dl~e~k~~~g-~~~~i~Gn 279 (335)
T cd00717 208 DFEEFVLPYLKRIIEEVKKRLPGVPV-ILFA-KGA-GGLLEDLAQLG-ADVVGLDWR---VDLDEARKRLG-PKVALQGN 279 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCE-EEEc-CCC-HHHHHHHHhcC-CCEEEeCCC---CCHHHHHHHhC-CCeEEEeC
Confidence 433 234444444332111222 3323 455 57899999999 999999964 46666666564 57888898
Q ss_pred eeCCCCCcCCHHHHHHHHHHHhhhcCC-CcEEEeCCCCCc
Q 004263 293 VDGRNIWANDLASSLTTLQDLAGTVGK-DKVVVSTSCSLL 331 (765)
Q Consensus 293 Vdgrn~~~ed~~~~~~~l~~~~~~~~~-~~l~vspsC~L~ 331 (765)
||.. ....+.+++.+.++++++..+. .+.+++|.|++.
T Consensus 280 i~p~-~l~~~~e~i~~~v~~~l~~~~~~~gfIl~~gc~i~ 318 (335)
T cd00717 280 LDPA-LLYAPKEAIEKEVKRILKAFGGAPGHIFNLGHGIL 318 (335)
T ss_pred CChh-hhcCCHHHHHHHHHHHHHHhCcCCCceeecCCcCC
Confidence 8874 4567789999999999987754 579999999974
No 62
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=97.50 E-value=0.0015 Score=71.42 Aligned_cols=175 Identities=10% Similarity=0.103 Sum_probs=118.0
Q ss_pred CCceEeehHHHHhhhccC-C----CCcCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEeecccccc---CCChHHH-
Q 004263 150 ETVPVLVGPVSYLLLSKP-A----KGVEKSFSLLSLIDKIIPVYKEVVAELKAA-GATWIQFDEPTLVL---DLDSHKL- 219 (765)
Q Consensus 150 ~~K~vl~GP~T~l~l~~~-~----~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~-G~~~VQiDEP~L~~---d~~~~~~- 219 (765)
..-+.+.||+|.+.+-.. . .-|...-.-.++++.++++..+.++...++ |++.||+-|+.=.. -+++++.
T Consensus 114 ~~~~~~~Gpf~~a~~l~g~e~~~~~l~~~PE~v~~lld~ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~ 193 (321)
T cd03309 114 IDVPLPGGVFERFRLRMSMEDALMALYEEPEAAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFR 193 (321)
T ss_pred eccCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHH
Confidence 345788999998653210 0 011000023467888888888888887777 99999997752221 1455543
Q ss_pred ----HHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeC
Q 004263 220 ----QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDG 295 (765)
Q Consensus 220 ----~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdg 295 (765)
..+++.++.+.+. ....++++.| |+. ...++.+.+++ +|.+++|... .++..+++.++ +|....|-+|.
T Consensus 194 efv~P~~krIi~~ik~~-~g~piilH~c-G~~-~~~l~~~~e~g-~dvl~~d~~~--~dl~eak~~~g-~k~~l~GNlDp 266 (321)
T cd03309 194 EFILPRMQRIFDFLRSN-TSALIVHHSC-GAA-ASLVPSMAEMG-VDSWNVVMTA--NNTAELRRLLG-DKVVLAGAIDD 266 (321)
T ss_pred HHHHHHHHHHHHHHHhc-cCCceEEEeC-CCc-HHHHHHHHHcC-CCEEEecCCC--CCHHHHHHHhC-CCeEEEcCCCh
Confidence 2334444444331 1234677777 766 67899999999 9999999754 36766666564 47888899997
Q ss_pred CCCCcCC-HHHHHHHHHHHhhhcCC-CcEEEeCCCCCc
Q 004263 296 RNIWAND-LASSLTTLQDLAGTVGK-DKVVVSTSCSLL 331 (765)
Q Consensus 296 rn~~~ed-~~~~~~~l~~~~~~~~~-~~l~vspsC~L~ 331 (765)
...-... ++++.+.++++.+.++. .+.+.+|+|++-
T Consensus 267 ~~L~~~~t~E~i~~~v~~~l~~~g~~~~fIf~~~~~~~ 304 (321)
T cd03309 267 VALDTATWPEEDARGVAKAAAECAPIHPFISAPTAGLP 304 (321)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhCCCCCEEeCccCCCC
Confidence 5554444 79999999999998886 789999999984
No 63
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=97.43 E-value=0.0018 Score=67.60 Aligned_cols=190 Identities=14% Similarity=0.129 Sum_probs=134.2
Q ss_pred CCceEeeechhHHhhhccccCC-------------C--CHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCC
Q 004263 552 RPMKGMLTGPVTILNWSFVRND-------------Q--PRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLR 616 (765)
Q Consensus 552 ~~vK~~ltGPvTll~~s~~~~~-------------~--~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~ 616 (765)
.|+-|-.-+|||++...-...+ . ....+++.+..++-+.+..-..+|+..+||=|---.+
T Consensus 145 vpl~GF~GaPwTlm~YmiEGGgSkt~~~aK~w~~~~Pe~sh~lL~~lTda~v~Yl~~Qv~aGAq~lQiFeSwage----- 219 (359)
T KOG2872|consen 145 VPLIGFVGAPWTLMTYMIEGGGSKTFTQAKRWLFQYPEVSHALLQILTDAIVEYLVYQVVAGAQALQIFESWAGE----- 219 (359)
T ss_pred cceeeecCCchhhheeeecCCCchhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccc-----
Confidence 5888888899999864321111 0 1245777778888888888889999999997744333
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCC--------CceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHHhhhccc
Q 004263 617 KSEQDFYLKWAVHSFRITNCGVQD--------TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVK 688 (765)
Q Consensus 617 ~~~~~~~l~~~v~a~~~~~~~v~~--------~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~ 688 (765)
.++.++.+|+...++++.+.+++ .+.+++-.- |+ .-.++.+..+++|+|++|=+....+.-+.+.
T Consensus 220 -Lspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~~vPmi~fak-G~-g~~Le~l~~tG~DVvgLDWTvdp~ear~~~g---- 292 (359)
T KOG2872|consen 220 -LSPEDFEEFSLPYLRQIAEAVKKRLPELGLAPVPMILFAK-GS-GGALEELAQTGYDVVGLDWTVDPAEARRRVG---- 292 (359)
T ss_pred -CCHHHHHHhhhHHHHHHHHHHHHhhhhhcCCCCceEEEEc-Cc-chHHHHHHhcCCcEEeecccccHHHHHHhhC----
Confidence 35678888999998888877652 124444433 32 2468999999999999994332223222221
Q ss_pred CCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 004263 689 YRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLR 758 (765)
Q Consensus 689 ~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r 758 (765)
+..-.-|.+|.. ..-.+.|++.+++++.++..|+++-++|=+-|+..-++ ....+..+++++.++
T Consensus 293 -~~VtlQGNlDP~-~ly~s~e~it~~v~~mv~~fG~~ryI~NLGHGi~p~tp---~e~v~~f~E~~h~~~ 357 (359)
T KOG2872|consen 293 -NRVTLQGNLDPG-VLYGSKEEITQLVKQMVKDFGKSRYIANLGHGITPGTP---PEHVAHFVEAVHKIG 357 (359)
T ss_pred -CceEEecCCChH-HhcCCHHHHHHHHHHHHHHhCccceEEecCCCCCCCCC---HHHHHHHHHHHHHhc
Confidence 234455777753 23568999999999999999999999999999999888 455667788877653
No 64
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=96.22 E-value=0.079 Score=59.49 Aligned_cols=174 Identities=12% Similarity=0.089 Sum_probs=112.2
Q ss_pred CCCceEeehHHH-HhhhccC-C----CCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCe-EEeeccc-cccCCChHHHH
Q 004263 149 METVPVLVGPVS-YLLLSKP-A----KGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATW-IQFDEPT-LVLDLDSHKLQ 220 (765)
Q Consensus 149 ~~~K~vl~GP~T-~l~l~~~-~----~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~-VQiDEP~-L~~d~~~~~~~ 220 (765)
.++=..+.||+| +...-.. . .-|...-...++++.+++.-.+.++...++|+.- |-+.+|. +..-++++..+
T Consensus 171 vpi~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~lsp~~f~ 250 (378)
T cd03308 171 LNAGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLRPKQFE 250 (378)
T ss_pred cccceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCccCHHHHH
Confidence 467788999997 5421111 0 0111000224577777888888888888999983 4444553 33335555433
Q ss_pred -----HHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCcc-EEEEEeccCCCChhhHhhhCCCCCEEEEEEee
Q 004263 221 -----AFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVT-GFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVD 294 (765)
Q Consensus 221 -----~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd-~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVd 294 (765)
.+++..+.+... ...+.+|.| |+. ..+++.+.+++ .+ .++++-. .++...++.++ ++....|=||
T Consensus 251 ef~~P~~k~i~~~i~~~--g~~~ilh~c-G~~-~~~l~~l~~~g-~~~v~~~~~~---~dl~~ak~~~g-~~~~i~GNl~ 321 (378)
T cd03308 251 KFYWPSFKKVVEGLAAR--GQRIFLFFE-GDW-ERYLEYLQELP-KGKTVGLFEY---GDPKKVKEKLG-DKKCIAGGFP 321 (378)
T ss_pred HHHHHHHHHHHHHHHhc--CCCEEEEcC-CCc-HHHHHHHHhcC-CCcEEEcCCC---CCHHHHHHHhC-CCEEEEcCCC
Confidence 334444444331 235677777 777 67899999999 87 5555431 46776666565 5677778788
Q ss_pred CCCCCcCCHHHHHHHHHHHhhhcC-CCcEEEeCCCCCc
Q 004263 295 GRNIWANDLASSLTTLQDLAGTVG-KDKVVVSTSCSLL 331 (765)
Q Consensus 295 grn~~~ed~~~~~~~l~~~~~~~~-~~~l~vspsC~L~ 331 (765)
.-....-+++++.+.++++++..+ ....+++|.|++.
T Consensus 322 p~~L~~Gt~e~i~~~v~~~l~~~~~~~gfIl~~gcgi~ 359 (378)
T cd03308 322 TTLLKYGTPEECIDYVKELLDTLAPGGGFIFGTDKPII 359 (378)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhCCCCCEEEeCCCcCC
Confidence 764444589999999999999765 3569999999996
No 65
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=96.18 E-value=0.22 Score=55.06 Aligned_cols=187 Identities=16% Similarity=0.158 Sum_probs=119.4
Q ss_pred ccchHHHHHHHH-cC--CCCceEeehHHHHhh-hcc--CCCCcCCC-----CC---HHHHHHHHHHHHHHHHHHHHHcCC
Q 004263 135 HKAVQEYKEAKA-LG--METVPVLVGPVSYLL-LSK--PAKGVEKS-----FS---LLSLIDKIIPVYKEVVAELKAAGA 200 (765)
Q Consensus 135 ~~~~~e~~~a~~-~g--~~~K~vl~GP~T~l~-l~~--~~~~y~~~-----~~---~~~ll~~L~~~y~~~l~~L~~~G~ 200 (765)
+..++-.+.+++ ++ .+.=.-.-||+|++- +.. .++.|..- .+ -..|++.++++-.+-++...++|+
T Consensus 124 ~~V~~ai~~lrekl~~~~pLIgf~gsP~TlAsymieg~~s~~~~~~k~~m~~~P~~~~~ll~kltd~~i~Yl~~qi~aGA 203 (352)
T COG0407 124 PYVLDAIKLLREKLGGEVPLIGFAGSPWTLASYLIEGGGSKDFSKTKAMMYTEPDAVHALLDKLTDAVIEYLKAQIEAGA 203 (352)
T ss_pred HHHHHHHHHHHHHcCCCCCeEEecCCHHHHHHHHHcCCCcccHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345666666653 34 334455668999873 321 11111000 02 246888999999999999999999
Q ss_pred CeEEeeccccccCCChHHHHHHH-----HHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCCh
Q 004263 201 TWIQFDEPTLVLDLDSHKLQAFS-----DAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTL 275 (765)
Q Consensus 201 ~~VQiDEP~L~~d~~~~~~~~~~-----~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l 275 (765)
+.|||.+.. +..++..+-+.|. +..+.+......+. +++-| ++. ...++.+.+.+ +|++++|..-+ +
T Consensus 204 davqifDsW-~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~~p-ii~f~-~ga-~~~l~~m~~~g-~d~l~vdw~v~---l 275 (352)
T COG0407 204 DAVQIFDSW-AGVLSMIDYDEFVLPYMKRIVREVKEVKGGVP-VIHFC-KGA-GHLLEDMAKTG-FDVLGVDWRVD---L 275 (352)
T ss_pred CEEEeeccc-cccCCcccHHHHhhhHHHHHHHHHHHhCCCCc-EEEEC-CCc-HHHHHHHHhcC-CcEEeeccccC---H
Confidence 999999983 3333332233333 33333332111111 22223 334 56788999999 99999997544 4
Q ss_pred hhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCC-CcEEEeCCCCCc
Q 004263 276 DLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGK-DKVVVSTSCSLL 331 (765)
Q Consensus 276 ~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~-~~l~vspsC~L~ 331 (765)
+...+.+. ++.-.-|=+|. .+...+.+++.+..++.++-.+. ...++|+-||..
T Consensus 276 ~~a~~~~~-~~~~lqGNldP-~lL~~~~~~i~~~~~~iL~~~~~~~~~IfnlGhGI~ 330 (352)
T COG0407 276 KEAKKRLG-DKVALQGNLDP-ALLYAPPEAIKEEVKRILEDGGDGSGYIFNLGHGIL 330 (352)
T ss_pred HHHHHHhC-CCceEEeccCh-HhhcCCHHHHHHHHHHHHHHhccCCCceecCCCCcC
Confidence 44444342 34677899999 88889999999999988876543 479999999996
No 66
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=91.10 E-value=1.6 Score=45.45 Aligned_cols=144 Identities=13% Similarity=0.198 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCC
Q 004263 585 LAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMD 664 (765)
Q Consensus 585 ~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~ 664 (765)
.-+.++++.|+++|+++|.+|=-.-.. .|--..++ +.+++++ .+..+.+|+.-.+-...++.+.+++
T Consensus 25 ~~l~~el~~l~~~g~d~lHiDVMDG~F-VPNitfGp-----~~i~~i~-------~~~~~DvHLMv~~P~~~i~~~~~aG 91 (228)
T PRK08091 25 LKFNETLTTLSENQLRLLHFDIADGQF-SPFFTVGA-----IAIKQFP-------THCFKDVHLMVRDQFEVAKACVAAG 91 (228)
T ss_pred HHHHHHHHHHHHCCCCEEEEeccCCCc-CCccccCH-----HHHHHhC-------CCCCEEEEeccCCHHHHHHHHHHhC
Confidence 367889999999999999999432111 11111222 2344443 1355788988777778889999999
Q ss_pred ccEEEEecCC-CC-hhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCCChh
Q 004263 665 ADVITIENSR-SD-EKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLES-NILWVNPDCGLKTRKYS 741 (765)
Q Consensus 665 ~D~isiE~~r-~~-~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~-~~l~vsPdCGL~~~~~~ 741 (765)
+|.|++=... .+ .+.|+.+++ .+..+-+|+.=.-.+ +++.+ +..+..++. =-+-|+|+.|=...-+
T Consensus 92 ad~It~H~Ea~~~~~~~l~~Ik~---~g~~~kaGlalnP~T---p~~~i----~~~l~~vD~VLiMtV~PGfgGQ~f~~- 160 (228)
T PRK08091 92 ADIVTLQVEQTHDLALTIEWLAK---QKTTVLIGLCLCPET---PISLL----EPYLDQIDLIQILTLDPRTGTKAPSD- 160 (228)
T ss_pred CCEEEEcccCcccHHHHHHHHHH---CCCCceEEEEECCCC---CHHHH----HHHHhhcCEEEEEEECCCCCCccccH-
Confidence 9998776322 23 356777776 244335565422111 23333 233333320 2355777665333222
Q ss_pred hHHHHHHHHHH
Q 004263 742 EVKPALSNMVA 752 (765)
Q Consensus 742 ~~~~kL~~mv~ 752 (765)
.+..|++.+.+
T Consensus 161 ~~l~KI~~lr~ 171 (228)
T PRK08091 161 LILDRVIQVEN 171 (228)
T ss_pred HHHHHHHHHHH
Confidence 34555554443
No 67
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=90.09 E-value=6.1 Score=39.41 Aligned_cols=111 Identities=19% Similarity=0.250 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 004263 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (765)
Q Consensus 188 y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD 267 (765)
+.+.+.++.+.|+.+||+-+| +++.++...+.+....+.... ...++++.+ .+...++. +||+||.
T Consensus 14 ~~~~l~~~~~~gv~~v~lR~k----~~~~~~~~~~a~~l~~~~~~~-~~~liin~~--------~~la~~~~-~dGvHl~ 79 (180)
T PF02581_consen 14 FLEQLEAALAAGVDLVQLREK----DLSDEELLELARRLAELCQKY-GVPLIINDR--------VDLALELG-ADGVHLG 79 (180)
T ss_dssp HHHHHHHHHHTT-SEEEEE-S----SS-HHHHHHHHHHHHHHHHHT-TGCEEEES---------HHHHHHCT--SEEEEB
T ss_pred HHHHHHHHHHCCCcEEEEcCC----CCCccHHHHHHHHHHHHhhcc-eEEEEecCC--------HHHHHhcC-CCEEEec
Confidence 334555667889999999999 444555444444444444322 357888733 34556788 9999998
Q ss_pred eccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCC
Q 004263 268 LIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTS 327 (765)
Q Consensus 268 ~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vsps 327 (765)
-..- .....+..+++++.+++.+ .+.++ ++++. ..+.+-+.++|=
T Consensus 80 ~~~~--~~~~~r~~~~~~~~ig~S~--------h~~~e----~~~a~-~~g~dYv~~gpv 124 (180)
T PF02581_consen 80 QSDL--PPAEARKLLGPDKIIGASC--------HSLEE----AREAE-ELGADYVFLGPV 124 (180)
T ss_dssp TTSS--SHHHHHHHHTTTSEEEEEE--------SSHHH----HHHHH-HCTTSEEEEETS
T ss_pred cccc--chHHhhhhcccceEEEeec--------CcHHH----HHHhh-hcCCCEEEECCc
Confidence 6432 2333333466778887766 44555 33333 246678888883
No 68
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=89.97 E-value=2.8 Score=43.56 Aligned_cols=91 Identities=18% Similarity=0.293 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCC
Q 004263 585 LAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMD 664 (765)
Q Consensus 585 ~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~ 664 (765)
..+.++++.|+++|+++|.+|=-.-.. .|--..++ ..+.+++..+. +..+.+|+.-.+-...++.+.+++
T Consensus 16 ~~l~~~i~~l~~~g~d~lHiDimDG~F-VPN~tfg~-----~~i~~lr~~~~----~~~~dvHLMv~~P~~~i~~~~~~g 85 (223)
T PRK08745 16 ARLGEEVDNVLKAGADWVHFDVMDNHY-VPNLTIGP-----MVCQALRKHGI----TAPIDVHLMVEPVDRIVPDFADAG 85 (223)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccCcc-CCCcccCH-----HHHHHHHhhCC----CCCEEEEeccCCHHHHHHHHHHhC
Confidence 367889999999999999999422111 11111222 34556665422 244778888777777889999999
Q ss_pred ccEEEEe--cCCCChhhHHHhhh
Q 004263 665 ADVITIE--NSRSDEKLLSVFRE 685 (765)
Q Consensus 665 ~D~isiE--~~r~~~~~L~~~~~ 685 (765)
+|.|++= ++..-.+.|+.+++
T Consensus 86 ad~I~~H~Ea~~~~~~~l~~Ir~ 108 (223)
T PRK08745 86 ATTISFHPEASRHVHRTIQLIKS 108 (223)
T ss_pred CCEEEEcccCcccHHHHHHHHHH
Confidence 9988776 33222356777776
No 69
>PRK08005 epimerase; Validated
Probab=89.23 E-value=2.8 Score=43.18 Aligned_cols=90 Identities=11% Similarity=0.122 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCC
Q 004263 585 LAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMD 664 (765)
Q Consensus 585 ~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~ 664 (765)
..+.+++++|.++|+++|.+|=-.-.. .|--..++ ..+++++..+ +..+.+|+.-.+-...++.+.+++
T Consensus 13 ~~l~~el~~l~~~g~d~lHiDvMDG~F-VPN~tfG~-----~~i~~l~~~t-----~~~~DvHLMv~~P~~~i~~~~~~g 81 (210)
T PRK08005 13 LRYAEALTALHDAPLGSLHLDIEDTSF-INNITFGM-----KTIQAVAQQT-----RHPLSFHLMVSSPQRWLPWLAAIR 81 (210)
T ss_pred HHHHHHHHHHHHCCCCEEEEeccCCCc-CCccccCH-----HHHHHHHhcC-----CCCeEEEeccCCHHHHHHHHHHhC
Confidence 367889999999999999999432111 11111222 3455565542 235788888777777889999999
Q ss_pred ccEEEEecCC-CC-hhhHHHhhh
Q 004263 665 ADVITIENSR-SD-EKLLSVFRE 685 (765)
Q Consensus 665 ~D~isiE~~r-~~-~~~L~~~~~ 685 (765)
+|.|++=... .+ .+.|+.+++
T Consensus 82 ad~It~H~Ea~~~~~~~l~~Ik~ 104 (210)
T PRK08005 82 PGWIFIHAESVQNPSEILADIRA 104 (210)
T ss_pred CCEEEEcccCccCHHHHHHHHHH
Confidence 9988776321 23 356777776
No 70
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=88.62 E-value=25 Score=37.32 Aligned_cols=152 Identities=15% Similarity=0.233 Sum_probs=80.7
Q ss_pred HHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccE
Q 004263 588 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 667 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~ 667 (765)
.+.+..+.++|+++|=|--.+-+-+ ....+.++.++....+++.+.+.. +..|.+-++.. ++++.-++.+++.
T Consensus 27 ~~~a~~~~~~GAdiIDIG~~st~p~--~~~i~~~~E~~rl~~~v~~i~~~~--~~plSIDT~~~---~v~e~al~~G~~i 99 (257)
T cd00739 27 VAHAEKMIAEGADIIDIGGESTRPG--ADPVSVEEELERVIPVLEALRGEL--DVLISVDTFRA---EVARAALEAGADI 99 (257)
T ss_pred HHHHHHHHHCCCCEEEECCCcCCCC--CCCCCHHHHHHHHHHHHHHHHhcC--CCcEEEeCCCH---HHHHHHHHhCCCE
Confidence 3445567789999998873332222 123456666666666666655443 35677887744 4677777778887
Q ss_pred EE-EecCCCChhhHHHhhhcccCCceeccccccCCCCCC-------CC-HHHH----HHHHHHHHhhcC--CCcEEEcCC
Q 004263 668 IT-IENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRI-------PS-TEEI----ADRINKMLAVLE--SNILWVNPD 732 (765)
Q Consensus 668 is-iE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~v-------e~-~eev----~~~i~~a~~~i~--~~~l~vsPd 732 (765)
|. +.....+.+.+..+++ ++-.+++ +-+...|.. ++ .+++ .++++.+. ..| .+++++-|.
T Consensus 100 INdisg~~~~~~~~~l~~~---~~~~vV~-m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~Gi~~~~Ii~DPg 174 (257)
T cd00739 100 INDVSGGSDDPAMLEVAAE---YGAPLVL-MHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAE-SAGVARNRIILDPG 174 (257)
T ss_pred EEeCCCCCCChHHHHHHHH---cCCCEEE-ECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHH-HcCCCHHHEEEecC
Confidence 74 4432222334444454 2222222 111111211 11 2334 33444443 334 469999998
Q ss_pred CCCCCCChhhHHHHHHHHHH
Q 004263 733 CGLKTRKYSEVKPALSNMVA 752 (765)
Q Consensus 733 CGL~~~~~~~~~~kL~~mv~ 752 (765)
.||.-. .++....|+++..
T Consensus 175 ~gf~ks-~~~~~~~l~~i~~ 193 (257)
T cd00739 175 IGFGKT-PEHNLELLRRLDE 193 (257)
T ss_pred CCcccC-HHHHHHHHHHHHH
Confidence 888543 5455555555433
No 71
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=87.87 E-value=36 Score=36.15 Aligned_cols=155 Identities=15% Similarity=0.257 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCc
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 665 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~ 665 (765)
...+.+..+.++|+++|=|--.+-+.+ ....+.++..++.....+.+.+.. +..|.+|++.. +.++.-++.++
T Consensus 24 ~~~~~a~~~~~~GA~iIDIG~~st~p~--~~~i~~~~E~~rl~~~v~~~~~~~--~~plsiDT~~~---~vi~~al~~G~ 96 (257)
T TIGR01496 24 KAVAHAERMLEEGADIIDVGGESTRPG--ADRVSPEEELNRVVPVIKALRDQP--DVPISVDTYRA---EVARAALEAGA 96 (257)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCC--CCCCCHHHHHHHHHHHHHHHHhcC--CCeEEEeCCCH---HHHHHHHHcCC
Confidence 344556677889999999853222222 112355555445555555544333 36688998743 45666667788
Q ss_pred cEEE-EecCCCChhhHHHhhhcccCCceeccccccCCCCC-------CCC-HHHHH----HHHHHHHhh-cCCCcEEEcC
Q 004263 666 DVIT-IENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPR-------IPS-TEEIA----DRINKMLAV-LESNILWVNP 731 (765)
Q Consensus 666 D~is-iE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~-------ve~-~eev~----~~i~~a~~~-i~~~~l~vsP 731 (765)
+.|. +.... +-+.+..+++ ++-.+.+ +-+...|. .++ .+++. ++++.+.+. ++.+++++-|
T Consensus 97 ~iINsis~~~-~~~~~~l~~~---~~~~vV~-m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilDP 171 (257)
T TIGR01496 97 DIINDVSGGQ-DPAMLEVAAE---YGVPLVL-MHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILDP 171 (257)
T ss_pred CEEEECCCCC-CchhHHHHHH---cCCcEEE-EeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEEC
Confidence 8653 22211 2234444554 2322222 11111111 111 33333 334433332 2347999999
Q ss_pred CCCCCCCChhhHHHHHHHHHHH
Q 004263 732 DCGLKTRKYSEVKPALSNMVAA 753 (765)
Q Consensus 732 dCGL~~~~~~~~~~kL~~mv~a 753 (765)
..||.- +.++....|+++...
T Consensus 172 g~gf~k-s~~~~~~~l~~i~~l 192 (257)
T TIGR01496 172 GIGFGK-TPEHNLELLKHLEEF 192 (257)
T ss_pred CCCccc-CHHHHHHHHHHHHHH
Confidence 888865 455666666655443
No 72
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=86.83 E-value=6.3 Score=40.68 Aligned_cols=145 Identities=21% Similarity=0.292 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCc
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 665 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~ 665 (765)
.+.+++++++++|+++|-+|=-.-.. .|--...+ +.+++++..+ +..+.+|+=-.+-...++.+.+.++
T Consensus 17 ~l~~el~~~~~agad~iH~DVMDghF-VPNiTfGp-----~~v~~l~~~t-----~~p~DvHLMV~~p~~~i~~fa~aga 85 (220)
T COG0036 17 RLGEELKALEAAGADLIHIDVMDGHF-VPNITFGP-----PVVKALRKIT-----DLPLDVHLMVENPDRYIEAFAKAGA 85 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCCCc-CCCcccCH-----HHHHHHhhcC-----CCceEEEEecCCHHHHHHHHHHhCC
Confidence 57789999999999999999533211 11111222 4566666621 3457788777777889999999999
Q ss_pred cEEEEecCCC-C-hhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCCChhh
Q 004263 666 DVITIENSRS-D-EKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLES-NILWVNPDCGLKTRKYSE 742 (765)
Q Consensus 666 D~isiE~~r~-~-~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~-~~l~vsPdCGL~~~~~~~ 742 (765)
|.|++=.... + .+.|+.+++ ..+=+|++=- | .++- +.++..+..++. =-.-|+|+-|=....+ +
T Consensus 86 d~It~H~E~~~~~~r~i~~Ik~-----~G~kaGv~ln--P--~Tp~---~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~-~ 152 (220)
T COG0036 86 DIITFHAEATEHIHRTIQLIKE-----LGVKAGLVLN--P--ATPL---EALEPVLDDVDLVLLMSVNPGFGGQKFIP-E 152 (220)
T ss_pred CEEEEEeccCcCHHHHHHHHHH-----cCCeEEEEEC--C--CCCH---HHHHHHHhhCCEEEEEeECCCCcccccCH-H
Confidence 9998764322 2 467777776 2333444311 1 2222 233333333321 1244566544444433 4
Q ss_pred HHHHHHHHHHHH
Q 004263 743 VKPALSNMVAAA 754 (765)
Q Consensus 743 ~~~kL~~mv~aa 754 (765)
+..|++.+.+..
T Consensus 153 ~l~Ki~~lr~~~ 164 (220)
T COG0036 153 VLEKIRELRAMI 164 (220)
T ss_pred HHHHHHHHHHHh
Confidence 555655554443
No 73
>PLN02334 ribulose-phosphate 3-epimerase
Probab=86.68 E-value=9.8 Score=39.55 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCc
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 665 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~ 665 (765)
.+.++++.+.+.|+++||+|+...... |.....+ ..++.++..+ ...+.+|+---+-++.++.+.++++
T Consensus 21 ~l~~~l~~~~~~g~~~ihld~~d~~f~-~~~~~g~-----~~~~~l~~~~-----~~~~~vhlmv~~p~d~~~~~~~~ga 89 (229)
T PLN02334 21 NLAEEAKRVLDAGADWLHVDVMDGHFV-PNLTIGP-----PVVKALRKHT-----DAPLDCHLMVTNPEDYVPDFAKAGA 89 (229)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCcC-CccccCH-----HHHHHHHhcC-----CCcEEEEeccCCHHHHHHHHHHcCC
Confidence 366788899999999999998765321 1111121 2344444431 2335677776566678888899999
Q ss_pred cEE--EEe
Q 004263 666 DVI--TIE 671 (765)
Q Consensus 666 D~i--siE 671 (765)
|++ ++|
T Consensus 90 d~v~vH~~ 97 (229)
T PLN02334 90 SIFTFHIE 97 (229)
T ss_pred CEEEEeec
Confidence 999 777
No 74
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=84.65 E-value=8.2 Score=40.04 Aligned_cols=90 Identities=18% Similarity=0.258 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCc
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 665 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~ 665 (765)
-+.++++.|.++|++++.+|=-.-.. .|--..++ ..+++++..... ..+.+|+.-.+-...++.+.++++
T Consensus 13 ~l~~~i~~l~~~g~~~lH~DvmDG~F-vpn~tfg~-----~~i~~i~~~~~~----~~~dvHLMv~~p~~~i~~~~~~ga 82 (220)
T PRK08883 13 RLGEDVEKVLAAGADVVHFDVMDNHY-VPNLTFGA-----PICKALRDYGIT----APIDVHLMVKPVDRIIPDFAKAGA 82 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCcc-cCccccCH-----HHHHHHHHhCCC----CCEEEEeccCCHHHHHHHHHHhCC
Confidence 57889999999999999999422111 11111222 345566654222 447788887777778899999999
Q ss_pred cEEEEecCC-CC-hhhHHHhhh
Q 004263 666 DVITIENSR-SD-EKLLSVFRE 685 (765)
Q Consensus 666 D~isiE~~r-~~-~~~L~~~~~ 685 (765)
|.|++=... .+ .+.|+.+++
T Consensus 83 d~i~~H~Ea~~~~~~~l~~ik~ 104 (220)
T PRK08883 83 SMITFHVEASEHVDRTLQLIKE 104 (220)
T ss_pred CEEEEcccCcccHHHHHHHHHH
Confidence 988775322 23 356666766
No 75
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=83.59 E-value=7.8 Score=39.90 Aligned_cols=107 Identities=12% Similarity=0.065 Sum_probs=62.0
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEecc
Q 004263 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR 270 (765)
Q Consensus 191 ~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~ 270 (765)
.++++.++|+.+||+-++-+ +.++...+......+.+.. ...++|+.. ++....++ .||+||...+
T Consensus 24 ~l~~~l~~G~~~vqLR~k~~----~~~~~~~la~~l~~~~~~~-~~~liInd~--------~~lA~~~~-adGVHlg~~d 89 (211)
T PRK03512 24 WIERLLDAGVRTLQLRIKDR----RDEEVEADVVAAIALGRRY-QARLFINDY--------WRLAIKHQ-AYGVHLGQED 89 (211)
T ss_pred HHHHHHhCCCCEEEEcCCCC----CHHHHHHHHHHHHHHHHHh-CCeEEEeCH--------HHHHHHcC-CCEEEcChHh
Confidence 47788899999999999854 4444444444444444322 256777632 34556788 9999997533
Q ss_pred CCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 004263 271 GTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 271 ~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vsp 326 (765)
- .....+..++.++.|++.+ .+.+++ .++.+ .|.+-+.++|
T Consensus 90 ~--~~~~~r~~~~~~~~iG~S~--------H~~~e~----~~A~~-~gaDYi~lgp 130 (211)
T PRK03512 90 L--ETADLNAIRAAGLRLGVST--------HDDMEI----DVALA-ARPSYIALGH 130 (211)
T ss_pred C--CHHHHHHhcCCCCEEEEeC--------CCHHHH----HHHhh-cCCCEEEECC
Confidence 2 1233333345555554443 345554 33322 4567777776
No 76
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=82.94 E-value=44 Score=33.87 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCc
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 665 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~ 665 (765)
-+.+|.+++.++|++||-+|=-.-...-.+ .+.+ -.++++|..+.. +.-.-+||--.+-.+.++.+...++
T Consensus 18 nL~~e~~~~l~~GadwlHlDVMDg~FVpNi-T~G~-----pvV~slR~~~~~---~~ffD~HmMV~~Peq~V~~~a~aga 88 (224)
T KOG3111|consen 18 NLAAECKKMLDAGADWLHLDVMDGHFVPNI-TFGP-----PVVESLRKHTGA---DPFFDVHMMVENPEQWVDQMAKAGA 88 (224)
T ss_pred HHHHHHHHHHHcCCCeEEEeeecccccCCc-ccch-----HHHHHHHhccCC---CcceeEEEeecCHHHHHHHHHhcCc
Confidence 467888999999999999995332211000 1111 357777764322 2245678877787889999999999
Q ss_pred cEEEEe--cCCCChhhHHHhhhcccCCceecccccc
Q 004263 666 DVITIE--NSRSDEKLLSVFREGVKYRAGIGPGVYD 699 (765)
Q Consensus 666 D~isiE--~~r~~~~~L~~~~~~~~~~~~l~~GVvd 699 (765)
+.++|- ......++.+.+++ .+..+|+-+=+
T Consensus 89 s~~tfH~E~~q~~~~lv~~ir~---~Gmk~G~alkP 121 (224)
T KOG3111|consen 89 SLFTFHYEATQKPAELVEKIRE---KGMKVGLALKP 121 (224)
T ss_pred ceEEEEEeeccCHHHHHHHHHH---cCCeeeEEeCC
Confidence 988776 32333456666765 14444444433
No 77
>PRK14057 epimerase; Provisional
Probab=82.29 E-value=9.7 Score=40.33 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCc
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 665 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~ 665 (765)
-+.++++.|+++|+++|.+|=-.-.. .|--...+ ..+++++. ...+.+|+.-.+-...++.+.++++
T Consensus 33 ~L~~el~~l~~~g~d~lHiDVMDG~F-VPNitfGp-----~~i~~i~~-------~~p~DvHLMV~~P~~~i~~~~~aGa 99 (254)
T PRK14057 33 ALHRYLQQLEALNQPLLHLDLMDGQF-CPQFTVGP-----WAVGQLPQ-------TFIKDVHLMVADQWTAAQACVKAGA 99 (254)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCcc-CCccccCH-----HHHHHhcc-------CCCeeEEeeeCCHHHHHHHHHHhCC
Confidence 67889999999999999999422111 11111222 23444432 2447788877777778899999999
Q ss_pred cEEEEecCC-CC-hhhHHHhhh
Q 004263 666 DVITIENSR-SD-EKLLSVFRE 685 (765)
Q Consensus 666 D~isiE~~r-~~-~~~L~~~~~ 685 (765)
|.|++=... .+ .+.|+.+++
T Consensus 100 d~It~H~Ea~~~~~~~l~~Ir~ 121 (254)
T PRK14057 100 HCITLQAEGDIHLHHTLSWLGQ 121 (254)
T ss_pred CEEEEeeccccCHHHHHHHHHH
Confidence 988765321 23 356666766
No 78
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=82.29 E-value=9.1 Score=39.16 Aligned_cols=98 Identities=19% Similarity=0.259 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCc
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 665 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~ 665 (765)
.+.+++++|+++|++++.+|=-.-.. .|--...+ ..+++++.. ....+.+|+.-.+-...++.+.++++
T Consensus 13 ~l~~~i~~l~~~g~d~lHiDiMDg~f-vpn~~~g~-----~~i~~i~~~-----~~~~~DvHLMv~~P~~~i~~~~~~g~ 81 (201)
T PF00834_consen 13 NLEEEIKRLEEAGADWLHIDIMDGHF-VPNLTFGP-----DIIKAIRKI-----TDLPLDVHLMVENPERYIEEFAEAGA 81 (201)
T ss_dssp GHHHHHHHHHHTT-SEEEEEEEBSSS-SSSB-B-H-----HHHHHHHTT-----SSSEEEEEEESSSGGGHHHHHHHHT-
T ss_pred HHHHHHHHHHHcCCCEEEEeeccccc-CCcccCCH-----HHHHHHhhc-----CCCcEEEEeeeccHHHHHHHHHhcCC
Confidence 46789999999999999999433111 12111222 334455443 23567888887887788999999999
Q ss_pred cEEEEecC-CCC-hhhHHHhhhcccCCceecccc
Q 004263 666 DVITIENS-RSD-EKLLSVFREGVKYRAGIGPGV 697 (765)
Q Consensus 666 D~isiE~~-r~~-~~~L~~~~~~~~~~~~l~~GV 697 (765)
|.|++-.. ..+ .+.++.+++ .+...|+-+
T Consensus 82 ~~i~~H~E~~~~~~~~i~~ik~---~g~k~Gial 112 (201)
T PF00834_consen 82 DYITFHAEATEDPKETIKYIKE---AGIKAGIAL 112 (201)
T ss_dssp SEEEEEGGGTTTHHHHHHHHHH---TTSEEEEEE
T ss_pred CEEEEcccchhCHHHHHHHHHH---hCCCEEEEE
Confidence 99888732 223 467777776 255555554
No 79
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=80.90 E-value=79 Score=35.03 Aligned_cols=145 Identities=13% Similarity=0.233 Sum_probs=86.5
Q ss_pred HHHHHHHHHHcCCcEEEeccc------ccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEe--ccCChhHHHH
Q 004263 587 IKDEVEDLEKAGITVIQIDEA------ALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHM--CYSNFNDIIH 658 (765)
Q Consensus 587 l~~ev~~L~~aG~~~IQiDEP------aL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~--C~g~~~~i~~ 658 (765)
..+.+..|.++|+++|.+==+ ++.-+.+ ..+..+ .++.+.+.++ .+.+...+ .+++..+ ++
T Consensus 27 ~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~--~~~~~e-------~i~~~~~~~~-~~~~~~ll~pg~~~~~d-l~ 95 (337)
T PRK08195 27 VRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFG--AHTDEE-------YIEAAAEVVK-QAKIAALLLPGIGTVDD-LK 95 (337)
T ss_pred HHHHHHHHHHcCCCEEEeecCCCCCCccccCCCC--CCCHHH-------HHHHHHHhCC-CCEEEEEeccCcccHHH-HH
Confidence 445566788999999998321 2211111 112222 2223323333 35555444 3455544 56
Q ss_pred HHHcCCccEEEEecCCCChh----hHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCC
Q 004263 659 SIMDMDADVITIENSRSDEK----LLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCG 734 (765)
Q Consensus 659 ~l~~l~~D~isiE~~r~~~~----~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCG 734 (765)
...+.++|.|-+-+..+..+ .++..++ .+..+...+.+++ ..+++++.+.++.+.+ .+++.+.+.-+.|
T Consensus 96 ~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~---~G~~v~~~l~~a~---~~~~e~l~~~a~~~~~-~Ga~~i~i~DT~G 168 (337)
T PRK08195 96 MAYDAGVRVVRVATHCTEADVSEQHIGLARE---LGMDTVGFLMMSH---MAPPEKLAEQAKLMES-YGAQCVYVVDSAG 168 (337)
T ss_pred HHHHcCCCEEEEEEecchHHHHHHHHHHHHH---CCCeEEEEEEecc---CCCHHHHHHHHHHHHh-CCCCEEEeCCCCC
Confidence 77788999988774333322 2333444 2567777788774 4588999999888865 6889999999999
Q ss_pred CCCCChhhHHHHHHHHH
Q 004263 735 LKTRKYSEVKPALSNMV 751 (765)
Q Consensus 735 L~~~~~~~~~~kL~~mv 751 (765)
..+ |+++..-++.+.
T Consensus 169 ~~~--P~~v~~~v~~l~ 183 (337)
T PRK08195 169 ALL--PEDVRDRVRALR 183 (337)
T ss_pred CCC--HHHHHHHHHHHH
Confidence 764 555555444444
No 80
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=80.62 E-value=9.4 Score=37.95 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=40.0
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 004263 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (765)
Q Consensus 191 ~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD 267 (765)
++.+..++|++.||+|-+ +.+++..+.+....+. +++.|.++ |++..++++.+.++. ||.|++=
T Consensus 92 e~~ea~~~g~d~I~lD~~------~~~~~~~~v~~l~~~~---~~v~ie~S---GGI~~~ni~~ya~~g-vD~isvg 155 (169)
T PF01729_consen 92 EAEEALEAGADIIMLDNM------SPEDLKEAVEELRELN---PRVKIEAS---GGITLENIAEYAKTG-VDVISVG 155 (169)
T ss_dssp HHHHHHHTT-SEEEEES-------CHHHHHHHHHHHHHHT---TTSEEEEE---SSSSTTTHHHHHHTT--SEEEEC
T ss_pred HHHHHHHhCCCEEEecCc------CHHHHHHHHHHHhhcC---CcEEEEEE---CCCCHHHHHHHHhcC-CCEEEcC
Confidence 334455689999999976 3334443333333332 24566666 777667899999999 9999874
No 81
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=80.57 E-value=27 Score=34.43 Aligned_cols=111 Identities=17% Similarity=0.192 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEE
Q 004263 187 VYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF 266 (765)
Q Consensus 187 ~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~l 266 (765)
.+.+.++++.+.|+.+||||.+- .+......+.+.+..+.... ..++++.. -++...+.+ .|++|+
T Consensus 13 ~~~~~l~~l~~~g~~~i~lr~~~----~~~~~~~~~~~~i~~~~~~~-~~~l~~~~--------~~~~a~~~g-~~~vh~ 78 (196)
T cd00564 13 DLLEVVEAALKGGVTLVQLREKD----LSARELLELARALRELCRKY-GVPLIIND--------RVDLALAVG-ADGVHL 78 (196)
T ss_pred hHHHHHHHHHhcCCCEEEEeCCC----CCHHHHHHHHHHHHHHHHHh-CCeEEEeC--------hHHHHHHcC-CCEEec
Confidence 34567778889999999999973 33322222222233332211 24566542 145567888 999999
Q ss_pred EeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 004263 267 DLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 267 D~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vsp 326 (765)
..... ....+....+.++.+++.+ .+.+++ +++.+ .|.+-+.++|
T Consensus 79 ~~~~~--~~~~~~~~~~~~~~~g~~~--------~t~~~~----~~~~~-~g~d~i~~~~ 123 (196)
T cd00564 79 GQDDL--PVAEARALLGPDLIIGVST--------HSLEEA----LRAEE-LGADYVGFGP 123 (196)
T ss_pred CcccC--CHHHHHHHcCCCCEEEeeC--------CCHHHH----HHHhh-cCCCEEEECC
Confidence 85332 2233333233445555443 233333 33333 4667788764
No 82
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=79.95 E-value=93 Score=33.59 Aligned_cols=155 Identities=15% Similarity=0.174 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCcc
Q 004263 587 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD 666 (765)
Q Consensus 587 l~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D 666 (765)
..+.+..+.+.|+++|=|--.+-+.+. ...+.++.++....+++.+.+.. +..|.+-++.. ++++..++.++|
T Consensus 40 a~~~a~~~~~~GAdIIDIGgeSTrPg~--~~v~~eeE~~Rv~pvI~~l~~~~--~~~ISIDT~~~---~va~~AL~~Gad 112 (282)
T PRK11613 40 AVKHANLMINAGATIIDVGGESTRPGA--AEVSVEEELDRVIPVVEAIAQRF--EVWISVDTSKP---EVIRESAKAGAH 112 (282)
T ss_pred HHHHHHHHHHCCCcEEEECCCCCCCCC--CCCCHHHHHHHHHHHHHHHHhcC--CCeEEEECCCH---HHHHHHHHcCCC
Confidence 334566778899999998866655442 23567777777777777766544 35688888855 467777788999
Q ss_pred EEEEecCCCChhhHHHhhhcccCCceecc----ccccC--CCCCCCC-H----HHHHHHHHHHHhh-cCCCcEEEcCCCC
Q 004263 667 VITIENSRSDEKLLSVFREGVKYRAGIGP----GVYDI--HSPRIPS-T----EEIADRINKMLAV-LESNILWVNPDCG 734 (765)
Q Consensus 667 ~isiE~~r~~~~~L~~~~~~~~~~~~l~~----GVvd~--~s~~ve~-~----eev~~~i~~a~~~-i~~~~l~vsPdCG 734 (765)
.|.==..-.+-+.+..+.+ + +-.+++ |.-.+ ..+..++ . +.+.++++.+.+. ++.+++++-|.=|
T Consensus 113 iINDI~g~~d~~~~~~~a~-~--~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiG 189 (282)
T PRK11613 113 IINDIRSLSEPGALEAAAE-T--GLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFG 189 (282)
T ss_pred EEEECCCCCCHHHHHHHHH-c--CCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCC
Confidence 8721111112233444444 2 211111 11000 0011112 2 2334555554442 2346999999888
Q ss_pred CCCCChhhHHHHHHHHHH
Q 004263 735 LKTRKYSEVKPALSNMVA 752 (765)
Q Consensus 735 L~~~~~~~~~~kL~~mv~ 752 (765)
|+. +.++...-|+++-.
T Consensus 190 F~k-~~~~n~~ll~~l~~ 206 (282)
T PRK11613 190 FGK-NLSHNYQLLARLAE 206 (282)
T ss_pred cCC-CHHHHHHHHHHHHH
Confidence 754 44455555555433
No 83
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=79.32 E-value=90 Score=33.04 Aligned_cols=154 Identities=14% Similarity=0.192 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCc
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 665 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~ 665 (765)
.+.+.+..+.+.|+++|=|--.+-+-+ ....+.++..+....+.+.+.+.. +..|.+-++.. ++++.-++..+
T Consensus 25 ~~~~~a~~~~~~GAdiIDvG~~st~p~--~~~~~~~~E~~rl~~~v~~l~~~~--~~piSIDT~~~---~v~~aaL~~g~ 97 (258)
T cd00423 25 KALEHARRMVEEGADIIDIGGESTRPG--AEPVSVEEELERVIPVLRALAGEP--DVPISVDTFNA---EVAEAALKAGA 97 (258)
T ss_pred HHHHHHHHHHHCCCCEEEECCCcCCCC--CCcCCHHHHHHHHHHHHHHHHhcC--CCeEEEeCCcH---HHHHHHHHhCC
Confidence 444556677889999998885443322 122345555555555555554433 24455555532 46777777777
Q ss_pred cEEE-EecCCCChhhHHHhhhcccCCceeccccccCCCC------C-CCC----HHHHHHHHHHHHhhcC--CCcEEEcC
Q 004263 666 DVIT-IENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSP------R-IPS----TEEIADRINKMLAVLE--SNILWVNP 731 (765)
Q Consensus 666 D~is-iE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~------~-ve~----~eev~~~i~~a~~~i~--~~~l~vsP 731 (765)
+.|. +-....+.+.+...++ ++-.+++--.+.... . -.. .+.+.++++++.+ .| .+++++-|
T Consensus 98 ~iINdis~~~~~~~~~~l~~~---~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~Gi~~~~IilDP 173 (258)
T cd00423 98 DIINDVSGGRGDPEMAPLAAE---YGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATE-AGIPPEDIILDP 173 (258)
T ss_pred CEEEeCCCCCCChHHHHHHHH---cCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHH-cCCCHHHEEEeC
Confidence 7653 2221112234444444 232222222222111 1 112 3444455555543 34 68999999
Q ss_pred CCCCCCCChhhHHHHHHHHH
Q 004263 732 DCGLKTRKYSEVKPALSNMV 751 (765)
Q Consensus 732 dCGL~~~~~~~~~~kL~~mv 751 (765)
.-|+.. +.+.....|+++.
T Consensus 174 g~g~~k-~~~~~~~~l~~i~ 192 (258)
T cd00423 174 GIGFGK-TEEHNLELLRRLD 192 (258)
T ss_pred CCCccC-CHHHHHHHHHHHH
Confidence 999876 4444444444444
No 84
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=78.90 E-value=13 Score=41.39 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 004263 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (765)
Q Consensus 188 y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD 267 (765)
+.+.+.++.+.|+.+||+-++-+ +..+...+.+.+..+.... ...++|. + ..+....++ +||+||-
T Consensus 159 ll~~l~~al~~Gv~~VQLR~K~~----~~~~~~~~a~~L~~l~~~~-~~~lIIN---D-----~vdlAl~~~-aDGVHLg 224 (347)
T PRK02615 159 LLEVVEAALKGGVTLVQYRDKTA----DDRQRLEEAKKLKELCHRY-GALFIVN---D-----RVDIALAVD-ADGVHLG 224 (347)
T ss_pred HHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHHHHHHHHHh-CCeEEEe---C-----hHHHHHHcC-CCEEEeC
Confidence 34567777799999999998843 4444444444455554432 2456666 2 234556788 9999996
Q ss_pred eccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 004263 268 LIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 268 ~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vsp 326 (765)
..+-+ ....+..++.++.|++.+ .+++++.+..+ .|.+=+.++|
T Consensus 225 q~dl~--~~~aR~llg~~~iIG~S~--------Hs~~e~~~A~~-----~GaDYI~lGP 268 (347)
T PRK02615 225 QEDLP--LAVARQLLGPEKIIGRST--------TNPEEMAKAIA-----EGADYIGVGP 268 (347)
T ss_pred hhhcC--HHHHHHhcCCCCEEEEec--------CCHHHHHHHHH-----cCCCEEEECC
Confidence 43211 222232354556655544 24555533332 3556666665
No 85
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=78.18 E-value=70 Score=32.81 Aligned_cols=153 Identities=16% Similarity=0.236 Sum_probs=84.8
Q ss_pred HHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEEEE
Q 004263 591 VEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITI 670 (765)
Q Consensus 591 v~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~isi 670 (765)
+.++.++|+++|=|---+-+.+. ...+.++.++|.+..++.+.+.. .+..|.+-++.. ++++..++.+++.|.=
T Consensus 25 a~~~~~~GAdiIDIg~~st~p~~--~~v~~~eE~~rl~~~l~~i~~~~-~~~plSIDT~~~---~v~~~aL~~g~~~ind 98 (210)
T PF00809_consen 25 AREQVEAGADIIDIGAESTRPGA--TPVSEEEEMERLVPVLQAIREEN-PDVPLSIDTFNP---EVAEAALKAGADIIND 98 (210)
T ss_dssp HHHHHHTT-SEEEEESSTSSTTS--SSSHHHHHHHHHHHHHHHHHHHH-TTSEEEEEESSH---HHHHHHHHHTSSEEEE
T ss_pred HHHHHHhcCCEEEecccccCCCC--CcCCHHHHHHHHHHHHHHHhccC-CCeEEEEECCCH---HHHHHHHHcCcceEEe
Confidence 77788999999988744433221 22455778889999888887611 146688888854 4566666668886543
Q ss_pred ecCCC-ChhhHHHhhhcccCCceeccccccCCCCCCC-CHH---HHHHHHHHHHhh---------cCCCcEEEcCCCCCC
Q 004263 671 ENSRS-DEKLLSVFREGVKYRAGIGPGVYDIHSPRIP-STE---EIADRINKMLAV---------LESNILWVNPDCGLK 736 (765)
Q Consensus 671 E~~r~-~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve-~~e---ev~~~i~~a~~~---------i~~~~l~vsPdCGL~ 736 (765)
-.+-. +-+.+...++ ++..+++=-.+.....++ +++ ++.+.+...+.. ++.+++++-|.=|+
T Consensus 99 ~~~~~~~~~~~~l~a~---~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~DPgigf- 174 (210)
T PF00809_consen 99 ISGFEDDPEMLPLAAE---YGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIILDPGIGF- 174 (210)
T ss_dssp TTTTSSSTTHHHHHHH---HTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTS-
T ss_pred cccccccchhhhhhhc---CCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEeeccccCc-
Confidence 33322 3345555555 222211111111111121 121 222222222222 34599999999999
Q ss_pred CCChhhHHHHHHHHHHH
Q 004263 737 TRKYSEVKPALSNMVAA 753 (765)
Q Consensus 737 ~~~~~~~~~kL~~mv~a 753 (765)
..+.+.....|+++...
T Consensus 175 ~~~~~~~~~~l~~i~~~ 191 (210)
T PF00809_consen 175 GKDPEQNLELLRNIEEL 191 (210)
T ss_dssp STTHHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 66776777777766543
No 86
>PRK13753 dihydropteroate synthase; Provisional
Probab=77.59 E-value=1.1e+02 Score=33.04 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=86.3
Q ss_pred HHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccE
Q 004263 588 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 667 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~ 667 (765)
.+.+..+.+.|+++|=|=-.+-+.+ ....+.++.++.....++.+.+. ...|.+-++.. +++...++.++|.
T Consensus 28 ~~~a~~m~~~GAdIIDIGgeSTrPg--a~~vs~eeE~~Rv~pvI~~l~~~---~~~ISIDT~~~---~va~~al~aGadi 99 (279)
T PRK13753 28 VTAAIEMLRVGSDVVDVGPAASHPD--ARPVSPADEIRRIAPLLDALSDQ---MHRVSIDSFQP---ETQRYALKRGVGY 99 (279)
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCC--CCcCCHHHHHHHHHHHHHHHHhC---CCcEEEECCCH---HHHHHHHHcCCCE
Confidence 3445567789999998876665544 22356777788667777766543 24588888865 4677788889996
Q ss_pred EE-EecCCCChhhHHHhhhcccCCceeccccccCCC------------CCCCC-HHHH----HHHHHHHHhh-cCCCcEE
Q 004263 668 IT-IENSRSDEKLLSVFREGVKYRAGIGPGVYDIHS------------PRIPS-TEEI----ADRINKMLAV-LESNILW 728 (765)
Q Consensus 668 is-iE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s------------~~ve~-~eev----~~~i~~a~~~-i~~~~l~ 728 (765)
|. +... .+.+.+..+.+ + +.++|=.|+ +.-++ .+++ .++++.+.+. ++.++++
T Consensus 100 INDVsg~-~d~~~~~vva~-~------~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~i~~~~~~Gi~~~~Ii 171 (279)
T PRK13753 100 LNDIQGF-PDPALYPDIAE-A------DCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLI 171 (279)
T ss_pred EEeCCCC-CchHHHHHHHH-c------CCCEEEEecCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCChhhEE
Confidence 53 2221 23334444443 1 122221121 11112 2333 3444444442 3348999
Q ss_pred EcCCCCCC-CCChhhHHHHHHHHHHH
Q 004263 729 VNPDCGLK-TRKYSEVKPALSNMVAA 753 (765)
Q Consensus 729 vsPdCGL~-~~~~~~~~~kL~~mv~a 753 (765)
+-|+=||. ..+.++-..-|+++-+.
T Consensus 172 lDPGiGF~k~k~~~~n~~ll~~l~~l 197 (279)
T PRK13753 172 LDPGMGFFLSPAPETSLHVLSNLQKL 197 (279)
T ss_pred EeCCCCCCCCCChHHHHHHHHhHHHH
Confidence 99999994 34566666666665443
No 87
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=77.50 E-value=20 Score=37.43 Aligned_cols=88 Identities=19% Similarity=0.274 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCc
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 665 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~ 665 (765)
-+.++++.|++ |+++|.+|=-.-.. .|--..++ ..+++++..+ +..+.+|+.-.+-...++.+.++++
T Consensus 16 ~l~~el~~l~~-g~d~lH~DiMDG~F-VPN~tfg~-----~~i~~ir~~t-----~~~~DvHLMv~~P~~~i~~~~~aGa 83 (229)
T PRK09722 16 KFKEQIEFLNS-KADYFHIDIMDGHF-VPNLTLSP-----FFVSQVKKLA-----SKPLDVHLMVTDPQDYIDQLADAGA 83 (229)
T ss_pred HHHHHHHHHHh-CCCEEEEecccCcc-CCCcccCH-----HHHHHHHhcC-----CCCeEEEEEecCHHHHHHHHHHcCC
Confidence 56788888988 99999999422111 11111222 2455565532 2457788887777778899999999
Q ss_pred cEEEEecC--CCC-hhhHHHhhh
Q 004263 666 DVITIENS--RSD-EKLLSVFRE 685 (765)
Q Consensus 666 D~isiE~~--r~~-~~~L~~~~~ 685 (765)
|.|++=.. ..+ ...|+.+++
T Consensus 84 d~it~H~Ea~~~~~~~~i~~Ik~ 106 (229)
T PRK09722 84 DFITLHPETINGQAFRLIDEIRR 106 (229)
T ss_pred CEEEECccCCcchHHHHHHHHHH
Confidence 98766533 222 356677776
No 88
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=75.48 E-value=22 Score=38.35 Aligned_cols=142 Identities=18% Similarity=0.247 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEecc--------CC-Cchhh
Q 004263 181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYF--------AD-VPAET 251 (765)
Q Consensus 181 l~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyf--------g~-~~~~~ 251 (765)
+++|..+|++.++-|.+-|++.+-|. .+.-++...+-+.+.+++++.... ++.++++.-+ |. + ...
T Consensus 138 fd~l~~ay~eq~~~Li~gG~D~iLiE-T~~D~l~~KaA~~a~~~~~~~~~~---~LPv~~s~Ti~~sG~tl~Gq~~-~a~ 212 (311)
T COG0646 138 FDELVEAYREQVEGLIDGGADLILIE-TIFDTLNAKAAVFAAREVFEELGV---RLPVMISGTITDSGRTLSGQTI-EAF 212 (311)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEe-hhccHHHHHHHHHHHHHHHHhcCC---cccEEEEEEEecCceecCCCcH-HHH
Confidence 67899999999999999999887664 222222122234444444443322 2445554333 22 3 567
Q ss_pred HHHHhcCCCccEEEEEeccCCCChhhHhhhC--CCCCEEE----EEEeeCCCC---CcCCHHHHHHHHHHHhhhcCCCcE
Q 004263 252 YKILTSLKGVTGFGFDLIRGTKTLDLIKTEF--PLGKYLF----AGVVDGRNI---WANDLASSLTTLQDLAGTVGKDKV 322 (765)
Q Consensus 252 ~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~--p~~k~l~----lGvVdgrn~---~~ed~~~~~~~l~~~~~~~~~~~l 322 (765)
+..|..++ ++.++|....+++.+.+..+.+ ..+..|| +|+=|-.+- ..++++...+.++...+.-+. =
T Consensus 213 ~~~l~~~~-~~~vGlNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~v--n 289 (311)
T COG0646 213 LNSLEHLG-PDAVGLNCALGPDEMRPHLRELSRIADAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAEFAEEGGV--N 289 (311)
T ss_pred HHHhhccC-CcEEeeccccCHHHHHHHHHHHHhccCceEEEeCCCCCCcccCCccccCCCHHHHHHHHHHHHHhCCc--e
Confidence 78888999 9999999998875554443322 2445555 366555555 999999999999887653221 2
Q ss_pred EEeCCCCC
Q 004263 323 VVSTSCSL 330 (765)
Q Consensus 323 ~vspsC~L 330 (765)
+|.-=||-
T Consensus 290 IvGGCCGT 297 (311)
T COG0646 290 IVGGCCGT 297 (311)
T ss_pred eeccccCC
Confidence 34566764
No 89
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=75.05 E-value=1.2e+02 Score=32.31 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=89.7
Q ss_pred HHHHHHHHHcCCcEEEecccccccC--CCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCCh-hHHHHHHHcCC
Q 004263 588 KDEVEDLEKAGITVIQIDEAALREG--LPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNF-NDIIHSIMDMD 664 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDEPaL~~~--l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~-~~i~~~l~~l~ 664 (765)
.+.++.|.++|+++|.+==|+..+. .........+ .++.+.+..++.+++..++=.+.. .+.++...+.+
T Consensus 23 ~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g 95 (266)
T cd07944 23 KAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDE-------FLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSV 95 (266)
T ss_pred HHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHH-------HHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCC
Confidence 3445567899999999887765431 1111111122 233333333224566555332321 13355557789
Q ss_pred ccEEEEecCCCChhh----HHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCCh
Q 004263 665 ADVITIENSRSDEKL----LSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKY 740 (765)
Q Consensus 665 ~D~isiE~~r~~~~~----L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~ 740 (765)
+|.|.+-...+.++. ++..++ .+..+..++.|+.. -+++.+.+.++++.+ .+++.+.+.-..|..+ |
T Consensus 96 v~~iri~~~~~~~~~~~~~i~~ak~---~G~~v~~~~~~a~~---~~~~~~~~~~~~~~~-~g~~~i~l~DT~G~~~--P 166 (266)
T cd07944 96 VDMIRVAFHKHEFDEALPLIKAIKE---KGYEVFFNLMAISG---YSDEELLELLELVNE-IKPDVFYIVDSFGSMY--P 166 (266)
T ss_pred cCEEEEecccccHHHHHHHHHHHHH---CCCeEEEEEEeecC---CCHHHHHHHHHHHHh-CCCCEEEEecCCCCCC--H
Confidence 999887754444433 333444 25578888888754 478899998888866 5899999999999774 5
Q ss_pred hhHHHHHHHHHH
Q 004263 741 SEVKPALSNMVA 752 (765)
Q Consensus 741 ~~~~~kL~~mv~ 752 (765)
+++...++.+.+
T Consensus 167 ~~v~~lv~~l~~ 178 (266)
T cd07944 167 EDIKRIISLLRS 178 (266)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 90
>PRK08999 hypothetical protein; Provisional
Probab=74.81 E-value=20 Score=38.95 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=62.9
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
+.++++.+.|+.+||+-++- .+.++...+.+.+..+.... ...++|+.+ .+...+++ .||+|+--.
T Consensus 148 ~~~~~~l~~g~~~vqlR~k~----~~~~~~~~~~~~l~~~~~~~-~~~liind~--------~~la~~~~-~~GvHl~~~ 213 (312)
T PRK08999 148 ARLERALAAGIRLIQLRAPQ----LPPAAYRALARAALGLCRRA-GAQLLLNGD--------PELAEDLG-ADGVHLTSA 213 (312)
T ss_pred HHHHHHHHCCCcEEEEeCCC----CCHHHHHHHHHHHHHHHHHh-CCEEEEECc--------HHHHHhcC-CCEEEcChh
Confidence 45555668899999999984 44455555555555555432 256777732 35566889 999999854
Q ss_pred cCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 004263 270 RGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 270 ~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vsp 326 (765)
..+ ....+. ++.++.+++.+ .+.+++ .++.+ .|++-+.++|
T Consensus 214 d~~--~~~~r~-~~~~~~ig~S~--------h~~~~~----~~a~~-~~~dyi~~gp 254 (312)
T PRK08999 214 QLA--ALAARP-LPAGRWVAASC--------HDAEEL----ARAQR-LGVDFAVLSP 254 (312)
T ss_pred hcC--hHhhcc-CCCCCEEEEec--------CCHHHH----HHHHh-cCCCEEEECC
Confidence 321 111222 44455555544 344443 33322 4667777777
No 91
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=73.67 E-value=38 Score=33.43 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCc
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 665 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~ 665 (765)
.+.+.++.+.+.|++.||++.+.... ..+.+. +..++..+... +..+.+| +-++...++++
T Consensus 13 ~~~~~l~~l~~~g~~~i~lr~~~~~~---------~~~~~~-~~~i~~~~~~~--~~~l~~~-------~~~~~a~~~g~ 73 (196)
T cd00564 13 DLLEVVEAALKGGVTLVQLREKDLSA---------RELLEL-ARALRELCRKY--GVPLIIN-------DRVDLALAVGA 73 (196)
T ss_pred hHHHHHHHHHhcCCCEEEEeCCCCCH---------HHHHHH-HHHHHHHHHHh--CCeEEEe-------ChHHHHHHcCC
Confidence 34566777888999999999875421 223222 23344433322 2334444 23667788999
Q ss_pred cEEEEecCC
Q 004263 666 DVITIENSR 674 (765)
Q Consensus 666 D~isiE~~r 674 (765)
|+++++...
T Consensus 74 ~~vh~~~~~ 82 (196)
T cd00564 74 DGVHLGQDD 82 (196)
T ss_pred CEEecCccc
Confidence 999999643
No 92
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=73.60 E-value=47 Score=34.48 Aligned_cols=109 Identities=13% Similarity=0.150 Sum_probs=61.5
Q ss_pred HHHHHHHHcC-CCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEe
Q 004263 190 EVVAELKAAG-ATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (765)
Q Consensus 190 ~~l~~L~~~G-~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~ 268 (765)
+.++++.+.| +++||+=|+-+ +..+...+.+....+.+.. ...++|.. .++....++ .||+||--
T Consensus 30 ~~l~~al~~G~v~~vQlR~K~l----~~~~~~~~a~~l~~l~~~~-gv~liINd--------~~dlA~~~~-adGVHLg~ 95 (221)
T PRK06512 30 KLLRAALQGGDVASVILPQYGL----DEATFQKQAEKLVPVIQEA-GAAALIAG--------DSRIAGRVK-ADGLHIEG 95 (221)
T ss_pred HHHHHHHcCCCccEEEEeCCCC----CHHHHHHHHHHHHHHHHHh-CCEEEEeC--------HHHHHHHhC-CCEEEECc
Confidence 4566677889 79999998854 4444444444444444432 24677752 245666788 99999963
Q ss_pred ccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 004263 269 IRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 269 ~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vsp 326 (765)
.. ..+..+++.++.++.|++.+.+ +.++.. ++. ..|++=+.++|
T Consensus 96 ~d--~~~~~~r~~~~~~~iiG~s~~~-------s~~~a~----~A~-~~gaDYv~~Gp 139 (221)
T PRK06512 96 NL--AALAEAIEKHAPKMIVGFGNLR-------DRHGAM----EIG-ELRPDYLFFGK 139 (221)
T ss_pred cc--cCHHHHHHhcCCCCEEEecCCC-------CHHHHH----Hhh-hcCCCEEEECC
Confidence 21 1355555445455554433232 223322 222 25677788776
No 93
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=73.12 E-value=73 Score=35.31 Aligned_cols=135 Identities=13% Similarity=0.041 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCCeEEee------ccccccCCC-hHHHHHHHHHHHHHHccCCCCcEE--EEeccCCCchhhHHHHhcCCC
Q 004263 190 EVVAELKAAGATWIQFD------EPTLVLDLD-SHKLQAFSDAYSELQSSLSGLNVL--IETYFADVPAETYKILTSLKG 260 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiD------EP~L~~d~~-~~~~~~~~~~y~~l~~~~~~~~i~--l~tyfg~~~~~~~~~l~~l~~ 260 (765)
++++.|.++|++.|++= -..+....+ ..+.+.++.+-... ++.++. +.-.+++. .+ ++...+..
T Consensus 29 ~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~----~~~~~~~ll~pg~~~~-~d-l~~a~~~g- 101 (337)
T PRK08195 29 AIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVV----KQAKIAALLLPGIGTV-DD-LKMAYDAG- 101 (337)
T ss_pred HHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhC----CCCEEEEEeccCcccH-HH-HHHHHHcC-
Confidence 56677889999999992 112211111 01233333332222 123332 22224445 43 56667788
Q ss_pred ccEEEEEeccCC-CChhhHhhh-CCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcccccc
Q 004263 261 VTGFGFDLIRGT-KTLDLIKTE-FPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVD 336 (765)
Q Consensus 261 vd~l~lD~~~~~-~~l~~l~~~-~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h~P~~ 336 (765)
+|.+.+=+--.. +......+. -..+..+.+.+.++ .+.+++.+++.++.+.+ .|++.+++.-+.|.+ .|.+
T Consensus 102 vd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a---~~~~~e~l~~~a~~~~~-~Ga~~i~i~DT~G~~-~P~~ 174 (337)
T PRK08195 102 VRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMS---HMAPPEKLAEQAKLMES-YGAQCVYVVDSAGAL-LPED 174 (337)
T ss_pred CCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEec---cCCCHHHHHHHHHHHHh-CCCCEEEeCCCCCCC-CHHH
Confidence 998876543221 111111111 12456788889887 46789999999988866 688999999999986 3544
No 94
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=73.07 E-value=1.6e+02 Score=32.67 Aligned_cols=145 Identities=13% Similarity=0.245 Sum_probs=85.9
Q ss_pred HHHHHHHHHHcCCcEEEecc------cccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEecc--CChhHHHH
Q 004263 587 IKDEVEDLEKAGITVIQIDE------AALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCY--SNFNDIIH 658 (765)
Q Consensus 587 l~~ev~~L~~aG~~~IQiDE------PaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~--g~~~~i~~ 658 (765)
..+.+..|.++|+++|.+== -++..+.+ ..+..+++ +.+.+.++ .+.+.+.+-. ++..+ ++
T Consensus 26 ~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~--~~~~~e~i-------~~~~~~~~-~~~~~~ll~pg~~~~~d-l~ 94 (333)
T TIGR03217 26 VRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFS--AHTDLEYI-------EAAADVVK-RAKVAVLLLPGIGTVHD-LK 94 (333)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCccccCCCC--CCChHHHH-------HHHHHhCC-CCEEEEEeccCccCHHH-HH
Confidence 34556678899999999831 22222221 11222222 22223333 3455545433 34433 56
Q ss_pred HHHcCCccEEEEecCCCChh----hHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCC
Q 004263 659 SIMDMDADVITIENSRSDEK----LLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCG 734 (765)
Q Consensus 659 ~l~~l~~D~isiE~~r~~~~----~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCG 734 (765)
...++++|.|-+=+.-++.+ .++..++ .+..+...+.+++ .-+++++.+.++.+.+ .+++.+++.-+.|
T Consensus 95 ~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~---~G~~v~~~l~~s~---~~~~e~l~~~a~~~~~-~Ga~~i~i~DT~G 167 (333)
T TIGR03217 95 AAYDAGARTVRVATHCTEADVSEQHIGMARE---LGMDTVGFLMMSH---MTPPEKLAEQAKLMES-YGADCVYIVDSAG 167 (333)
T ss_pred HHHHCCCCEEEEEeccchHHHHHHHHHHHHH---cCCeEEEEEEccc---CCCHHHHHHHHHHHHh-cCCCEEEEccCCC
Confidence 77788999998875333322 2333444 2556777777765 4578999998888765 6889999999999
Q ss_pred CCCCChhhHHHHHHHHH
Q 004263 735 LKTRKYSEVKPALSNMV 751 (765)
Q Consensus 735 L~~~~~~~~~~kL~~mv 751 (765)
..+ |+++.+.++.+.
T Consensus 168 ~~~--P~~v~~~v~~l~ 182 (333)
T TIGR03217 168 AML--PDDVRDRVRALK 182 (333)
T ss_pred CCC--HHHHHHHHHHHH
Confidence 874 555544444444
No 95
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=72.25 E-value=53 Score=34.20 Aligned_cols=99 Identities=18% Similarity=0.166 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCC
Q 004263 585 LAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMD 664 (765)
Q Consensus 585 ~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~ 664 (765)
..+.++++.|+++|+++|.+|=-.-.. .|--..++ ..++.++.....+. ..+|+|+ .+-...++.+.+++
T Consensus 19 ~~l~~~~~~l~~~~~~~~H~DimDg~f-vpn~~~G~-----~~v~~lr~~~~~~~--lDvHLm~--~~p~~~i~~~~~~G 88 (228)
T PTZ00170 19 SKLADEAQDVLSGGADWLHVDVMDGHF-VPNLSFGP-----PVVKSLRKHLPNTF--LDCHLMV--SNPEKWVDDFAKAG 88 (228)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccCcc-CCCcCcCH-----HHHHHHHhcCCCCC--EEEEECC--CCHHHHHHHHHHcC
Confidence 367889999999999999999432111 12111222 34555554432222 3445553 34445678889999
Q ss_pred ccEEEEecCCC-C--hhhHHHhhhcccCCceeccc
Q 004263 665 ADVITIENSRS-D--EKLLSVFREGVKYRAGIGPG 696 (765)
Q Consensus 665 ~D~isiE~~r~-~--~~~L~~~~~~~~~~~~l~~G 696 (765)
+|.+++=.... . .+.++.+++ .+..+|+-
T Consensus 89 ad~itvH~ea~~~~~~~~l~~ik~---~G~~~gva 120 (228)
T PTZ00170 89 ASQFTFHIEATEDDPKAVARKIRE---AGMKVGVA 120 (228)
T ss_pred CCEEEEeccCCchHHHHHHHHHHH---CCCeEEEE
Confidence 99988874322 2 134455554 24555543
No 96
>PRK07695 transcriptional regulator TenI; Provisional
Probab=71.55 E-value=65 Score=32.57 Aligned_cols=105 Identities=14% Similarity=0.156 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
+... +.+.|+++||+-++-+. .++...+.+...... ....+++++.+ .+....++ +||+|+-..
T Consensus 19 ~~~~-~~~~g~~~iqlR~k~~~----~~~~~~~~~~l~~~~--~~~~~liin~~--------~~la~~~~-~~gvHl~~~ 82 (201)
T PRK07695 19 AVAM-QIHSEVDYIHIREREKS----AKELYEGVESLLKKG--VPASKLIINDR--------VDIALLLN-IHRVQLGYR 82 (201)
T ss_pred HHHH-HHhCCCCEEEEcCCCCC----HHHHHHHHHHHHHhC--CCCCeEEEECH--------HHHHHHcC-CCEEEeCcc
Confidence 3443 67889999999998544 334333333322221 11235777633 34566788 999999753
Q ss_pred cCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 004263 270 RGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 270 ~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vsp 326 (765)
. .....+++.+| +..| |+ +.+ +.++ +.++.+ .|.+-+.++|
T Consensus 83 ~--~~~~~~r~~~~-~~~i--g~-s~~-----s~e~----a~~a~~-~Gadyi~~g~ 123 (201)
T PRK07695 83 S--FSVRSVREKFP-YLHV--GY-SVH-----SLEE----AIQAEK-NGADYVVYGH 123 (201)
T ss_pred c--CCHHHHHHhCC-CCEE--EE-eCC-----CHHH----HHHHHH-cCCCEEEECC
Confidence 2 22344544454 4444 44 222 3444 333333 4666666544
No 97
>PRK06256 biotin synthase; Validated
Probab=70.62 E-value=1.5e+02 Score=32.52 Aligned_cols=134 Identities=13% Similarity=0.099 Sum_probs=75.2
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEecc
Q 004263 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR 270 (765)
Q Consensus 191 ~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~ 270 (765)
+++.+.+.|+..+.|--- .......+.+.+.+.++.+.+. +++.+++..|.+..+.+..|.+.. ++.+++.+..
T Consensus 99 ~~~~~~~~g~~~~~l~~~--g~~p~~~~~~~~~e~i~~i~~~---~~i~~~~~~g~l~~e~l~~LkeaG-~~~v~~~lEt 172 (336)
T PRK06256 99 AAKEAIEEGAGTFCIVAS--GRGPSGKEVDQVVEAVKAIKEE---TDLEICACLGLLTEEQAERLKEAG-VDRYNHNLET 172 (336)
T ss_pred HHHHHHHCCCCEEEEEec--CCCCCchHHHHHHHHHHHHHhc---CCCcEEecCCcCCHHHHHHHHHhC-CCEEecCCcc
Confidence 344566779875544210 1112223455666777767543 344455556656467788899999 9999875442
Q ss_pred C---------CCChhhHhhh---C-CCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcccc
Q 004263 271 G---------TKTLDLIKTE---F-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTA 334 (765)
Q Consensus 271 ~---------~~~l~~l~~~---~-p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h~P 334 (765)
+ ..+++...+. + ..+-.+..|+|=|-+ |+.+++.+.+..+. .++++.+.+++=.+.-..|
T Consensus 173 s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Glg---Et~ed~~~~~~~l~-~l~~~~v~i~~l~P~pGT~ 245 (336)
T PRK06256 173 SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMG---ESLEDRVEHAFFLK-ELDADSIPINFLNPIPGTP 245 (336)
T ss_pred CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCC---CCHHHHHHHHHHHH-hCCCCEEeecccccCCCCC
Confidence 1 1233222110 1 123456777777753 77777777777665 4666777776544443444
No 98
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=70.08 E-value=36 Score=34.07 Aligned_cols=110 Identities=13% Similarity=0.155 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 004263 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (765)
Q Consensus 188 y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD 267 (765)
+.+.+..+.+.|+.+||+-++- .+..+...+...+..+.... ..+++++.+ .+...+++ .+|+||-
T Consensus 15 ~~~~~~~~~~~g~~~v~lR~~~----~~~~~~~~~~~~l~~~~~~~-~~~l~i~~~--------~~la~~~g-~~GvHl~ 80 (196)
T TIGR00693 15 LLNRVEAALKGGVTLVQLRDKG----SNTRERLALAEKLQELCRRY-GVPFIVNDR--------VDLALALG-ADGVHLG 80 (196)
T ss_pred HHHHHHHHHhcCCCEEEEecCC----CCHHHHHHHHHHHHHHHHHh-CCeEEEECH--------HHHHHHcC-CCEEecC
Confidence 3356667788999999999883 33443333333333332221 246777522 35566788 9999996
Q ss_pred eccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 004263 268 LIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 268 ~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vsp 326 (765)
... -....++..++.++.+++.+ + +.+++. ++.+ .|.+-+.++|
T Consensus 81 ~~~--~~~~~~r~~~~~~~~ig~s~---h-----~~~e~~----~a~~-~g~dyi~~~~ 124 (196)
T TIGR00693 81 QDD--LPASEARALLGPDKIIGVST---H-----NLEELA----EAEA-EGADYIGFGP 124 (196)
T ss_pred ccc--CCHHHHHHhcCCCCEEEEeC---C-----CHHHHH----HHhH-cCCCEEEECC
Confidence 322 12233333344555555443 2 334432 3333 4666677654
No 99
>PLN02334 ribulose-phosphate 3-epimerase
Probab=69.97 E-value=89 Score=32.38 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCCeEEeeccccccCCChHHH-HHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEE--
Q 004263 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHKL-QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGF-- 264 (765)
Q Consensus 188 y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~-~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l-- 264 (765)
+.+.++++.+.|++|||+|+.-.... +.... ..+.+.+..+.+. . +.+|+-+ -+. ++.++.+.+.. +|++
T Consensus 22 l~~~l~~~~~~g~~~ihld~~d~~f~-~~~~~g~~~~~~l~~~~~~-~-~~vhlmv--~~p-~d~~~~~~~~g-ad~v~v 94 (229)
T PLN02334 22 LAEEAKRVLDAGADWLHVDVMDGHFV-PNLTIGPPVVKALRKHTDA-P-LDCHLMV--TNP-EDYVPDFAKAG-ASIFTF 94 (229)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCcC-CccccCHHHHHHHHhcCCC-c-EEEEecc--CCH-HHHHHHHHHcC-CCEEEE
Confidence 56788899999999999998633211 11000 0112222222111 1 1333322 233 45567778888 9999
Q ss_pred EEE
Q 004263 265 GFD 267 (765)
Q Consensus 265 ~lD 267 (765)
|++
T Consensus 95 H~~ 97 (229)
T PLN02334 95 HIE 97 (229)
T ss_pred eec
Confidence 888
No 100
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=67.73 E-value=41 Score=34.74 Aligned_cols=105 Identities=19% Similarity=0.204 Sum_probs=59.3
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
+.+.+..+.|++.||+=|.-. +..+.....+....+.... ...++|. + -++.....+ .||+||--.
T Consensus 25 ~~ve~al~~Gv~~vQlR~K~~----~~~~~~~~a~~~~~lc~~~-~v~liIN---d-----~~dlA~~~~-AdGVHlGq~ 90 (211)
T COG0352 25 EWVEAALKGGVTAVQLREKDL----SDEEYLALAEKLRALCQKY-GVPLIIN---D-----RVDLALAVG-ADGVHLGQD 90 (211)
T ss_pred HHHHHHHhCCCeEEEEecCCC----ChHHHHHHHHHHHHHHHHh-CCeEEec---C-----cHHHHHhCC-CCEEEcCCc
Confidence 455566688999999998733 3333223333333444432 2456665 2 245556889 999999765
Q ss_pred cCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcC
Q 004263 270 RGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVG 318 (765)
Q Consensus 270 ~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~ 318 (765)
+- ......+.+++++.|++++ .|++++.+-.+...+|++
T Consensus 91 D~--~~~~ar~~~~~~~iIG~S~--------h~~eea~~A~~~g~DYv~ 129 (211)
T COG0352 91 DM--PLAEARELLGPGLIIGLST--------HDLEEALEAEELGADYVG 129 (211)
T ss_pred cc--chHHHHHhcCCCCEEEeec--------CCHHHHHHHHhcCCCEEE
Confidence 32 2333344466666666655 366776444433334443
No 101
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=65.66 E-value=14 Score=25.99 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004263 444 MDLRRVRREFKAKKISEDDYVKTIKE 469 (765)
Q Consensus 444 ~elr~a~~~~~~g~i~~~~~~~~~~~ 469 (765)
..|+...+.|.+|.||++||.+.-+.
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~ 28 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKAR 28 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 46788889999999999999986544
No 102
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=65.53 E-value=26 Score=35.40 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 004263 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (765)
Q Consensus 188 y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD 267 (765)
+.+.++.+.++|+++||+|.+-+ +..+.....+.+..+.... ..+++++. .++.+.++. +|++|+.
T Consensus 23 ~~~~~~~~~~~gv~~v~lr~~~~----~~~~~~~~~~~~~~~~~~~-~~~l~~~~--------~~~~a~~~g-ad~vh~~ 88 (212)
T PRK00043 23 LLEVVEAALEGGVTLVQLREKGL----DTRERLELARALKELCRRY-GVPLIVND--------RVDLALAVG-ADGVHLG 88 (212)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCC----CHHHHHHHHHHHHHHHHHh-CCeEEEeC--------hHHHHHHcC-CCEEecC
Confidence 44667788899999999998843 3222222222233343222 24566652 245677888 9999996
Q ss_pred ec
Q 004263 268 LI 269 (765)
Q Consensus 268 ~~ 269 (765)
..
T Consensus 89 ~~ 90 (212)
T PRK00043 89 QD 90 (212)
T ss_pred cc
Confidence 53
No 103
>COG3462 Predicted membrane protein [Function unknown]
Probab=65.48 E-value=6.9 Score=35.51 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=25.6
Q ss_pred cHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 004263 14 KRELKFALESFWDGKSSADELQNVAADLR 42 (765)
Q Consensus 14 ~reLk~A~e~yw~g~i~~~eL~~~~~~~~ 42 (765)
.|...=+.|+|-+|+||+||+++..++++
T Consensus 88 sRA~eIlkER~AkGEItEEEY~r~~~~ir 116 (117)
T COG3462 88 SRAEEILKERYAKGEITEEEYRRIIRTIR 116 (117)
T ss_pred cHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 36777889999999999999999988875
No 104
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=64.96 E-value=47 Score=38.81 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 004263 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (765)
Q Consensus 188 y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD 267 (765)
+.+.++++.+.|+.+|||-++.+ +.+++....+.+..+.... +..++++.+ .+....++ .||+||-
T Consensus 309 ~~~~l~~~l~~Gv~~vqlR~k~~----~~~~~~~~a~~l~~~~~~~-~~~liind~--------~~lA~~~~-adGvHl~ 374 (502)
T PLN02898 309 TVDAVRAAIEGGATIVQLREKEA----ETREFIEEAKACLAICRSY-GVPLLINDR--------VDVALACD-ADGVHLG 374 (502)
T ss_pred HHHHHHHHHHcCCCEEEEccCCC----CHHHHHHHHHHHHHHHHHh-CCEEEEcCh--------HHHHHhcC-CCEEEeC
Confidence 33567788899999999998844 3333322333333333322 246777633 34556778 9999996
Q ss_pred eccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 004263 268 LIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 268 ~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vsp 326 (765)
-.+- .....+..++.++.|++.+ .+++++ .++.+ .|++-+.++|
T Consensus 375 ~~d~--~~~~~r~~~~~~~~iG~S~--------h~~~e~----~~a~~-~gadyi~~gp 418 (502)
T PLN02898 375 QSDM--PVRLARSLLGPGKIIGVSC--------KTPEQA----EQAWK-DGADYIGCGG 418 (502)
T ss_pred hHhc--CHHHHHHhcCCCCEEEEeC--------CCHHHH----HHHhh-cCCCEEEECC
Confidence 4321 1233333355566655543 344554 33322 4666676655
No 105
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=64.39 E-value=25 Score=37.75 Aligned_cols=67 Identities=10% Similarity=0.123 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
+++.+..++|++.||+|.+ + .+.++++...+....+++.+..+ |++..+++..+.++. ||.+.+=..
T Consensus 193 eea~~A~~~GaDiI~LDn~------~---~e~l~~~v~~~~~~~~~~~ieAs---GgIt~~ni~~ya~~G-vD~IsvG~l 259 (273)
T PRK05848 193 EEAKNAMNAGADIVMCDNM------S---VEEIKEVVAYRNANYPHVLLEAS---GNITLENINAYAKSG-VDAISSGSL 259 (273)
T ss_pred HHHHHHHHcCCCEEEECCC------C---HHHHHHHHHHhhccCCCeEEEEE---CCCCHHHHHHHHHcC-CCEEEeChh
Confidence 4455667899999999987 2 23344444434322222334444 777557889999999 999877543
No 106
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=64.36 E-value=39 Score=38.55 Aligned_cols=108 Identities=11% Similarity=0.085 Sum_probs=61.3
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
+.++++.++|+++||+=|.-+ +.++.....+....+.+.. ..++++..+ ++...+++ .||+||--.
T Consensus 221 ~~ve~aL~aGv~~VQLReK~l----s~~el~~la~~l~~l~~~~-gv~LiIND~--------~dlAl~~g-AdGVHLGQe 286 (437)
T PRK12290 221 EWIERLLPLGINTVQLRIKDP----QQADLEQQIIRAIALGREY-NAQVFINDY--------WQLAIKHQ-AYGVHLGQE 286 (437)
T ss_pred HHHHHHHhCCCCEEEEeCCCC----CHHHHHHHHHHHHHHHHHh-CCEEEEECH--------HHHHHHcC-CCEEEcChH
Confidence 458888899999999998844 4444444444444454432 256777633 45566788 999999854
Q ss_pred cCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 004263 270 RGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 270 ~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vsp 326 (765)
+-+ ...++..++.++. +|+= . .+++++ .++.+ .|++=+.++|
T Consensus 287 DL~--~~~aR~ilg~~~i--IGvS-t-----Hs~eEl----~~A~~-~gaDYI~lGP 328 (437)
T PRK12290 287 DLE--EANLAQLTDAGIR--LGLS-T-----HGYYEL----LRIVQ-IQPSYIALGH 328 (437)
T ss_pred Hcc--hhhhhhhcCCCCE--EEEe-c-----CCHHHH----HHHhh-cCCCEEEECC
Confidence 321 1222322344444 4552 2 345554 23322 4566666665
No 107
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=64.06 E-value=23 Score=35.26 Aligned_cols=63 Identities=27% Similarity=0.304 Sum_probs=37.8
Q ss_pred HHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEE
Q 004263 590 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVI 668 (765)
Q Consensus 590 ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~i 668 (765)
++.+..++|+++||+|.+.. +.++.+++.++..-. . +.+-.+ |+++ +.+..+.++++|+|
T Consensus 92 e~~ea~~~g~d~I~lD~~~~------------~~~~~~v~~l~~~~~----~--v~ie~S-GGI~~~ni~~ya~~gvD~i 152 (169)
T PF01729_consen 92 EAEEALEAGADIIMLDNMSP------------EDLKEAVEELRELNP----R--VKIEAS-GGITLENIAEYAKTGVDVI 152 (169)
T ss_dssp HHHHHHHTT-SEEEEES-CH------------HHHHHHHHHHHHHTT----T--SEEEEE-SSSSTTTHHHHHHTT-SEE
T ss_pred HHHHHHHhCCCEEEecCcCH------------HHHHHHHHHHhhcCC----c--EEEEEE-CCCCHHHHHHHHhcCCCEE
Confidence 44455668999999997632 234445554444321 2 344444 6654 56888889999999
Q ss_pred EEe
Q 004263 669 TIE 671 (765)
Q Consensus 669 siE 671 (765)
++=
T Consensus 153 svg 155 (169)
T PF01729_consen 153 SVG 155 (169)
T ss_dssp EEC
T ss_pred EcC
Confidence 985
No 108
>COG3462 Predicted membrane protein [Function unknown]
Probab=63.67 E-value=8.3 Score=35.04 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHH
Q 004263 446 LRRVRREFKAKKISEDDYVKTIKEE 470 (765)
Q Consensus 446 lr~a~~~~~~g~i~~~~~~~~~~~~ 470 (765)
.--++|+|-+|+||+|||++.+++.
T Consensus 91 ~eIlkER~AkGEItEEEY~r~~~~i 115 (117)
T COG3462 91 EEILKERYAKGEITEEEYRRIIRTI 115 (117)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 3447899999999999999988764
No 109
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=62.16 E-value=1.6e+02 Score=32.49 Aligned_cols=135 Identities=13% Similarity=0.057 Sum_probs=77.8
Q ss_pred HHHHHHHHcCCCeEEee------ccccccCCC-hHHHHHHHHHHHHHHccCCCCcEEEEe--ccCCCchhhHHHHhcCCC
Q 004263 190 EVVAELKAAGATWIQFD------EPTLVLDLD-SHKLQAFSDAYSELQSSLSGLNVLIET--YFADVPAETYKILTSLKG 260 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiD------EP~L~~d~~-~~~~~~~~~~y~~l~~~~~~~~i~l~t--yfg~~~~~~~~~l~~l~~ 260 (765)
++++.|.++|+++|.+= .-.+....+ ..+.+.++.+...+. +.++.... -.+.. .+ ++...+.+
T Consensus 28 ~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~----~~~~~~ll~pg~~~~-~d-l~~a~~~g- 100 (333)
T TIGR03217 28 AIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK----RAKVAVLLLPGIGTV-HD-LKAAYDAG- 100 (333)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC----CCEEEEEeccCccCH-HH-HHHHHHCC-
Confidence 56677889999999993 112222111 113344444433332 22332211 12344 33 56667788
Q ss_pred ccEEEEEeccCC-CChhhHhhhC-CCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcccccc
Q 004263 261 VTGFGFDLIRGT-KTLDLIKTEF-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVD 336 (765)
Q Consensus 261 vd~l~lD~~~~~-~~l~~l~~~~-p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h~P~~ 336 (765)
|+.+.+=+--.. +......+.. ..+..+...+.++ .+.+++.+++.++.+.+ .|++.++|.-+.|.+ +|.+
T Consensus 101 vd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s---~~~~~e~l~~~a~~~~~-~Ga~~i~i~DT~G~~-~P~~ 173 (333)
T TIGR03217 101 ARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMS---HMTPPEKLAEQAKLMES-YGADCVYIVDSAGAM-LPDD 173 (333)
T ss_pred CCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcc---cCCCHHHHHHHHHHHHh-cCCCEEEEccCCCCC-CHHH
Confidence 998886543221 1111111111 1356788888876 46789999999998866 688999999999987 4554
No 110
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=61.66 E-value=63 Score=33.56 Aligned_cols=126 Identities=13% Similarity=0.237 Sum_probs=62.9
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhh--HHHHhcCCCccEEEEE
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAET--YKILTSLKGVTGFGFD 267 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~--~~~l~~l~~vd~l~lD 267 (765)
+.++.+.+.|++|||+=+-.....-.....+.+.+ +.+.. ...+.+. |++ ... ...+.++. ++++++.
T Consensus 36 e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~----i~~~~-~~~l~v~---GGi-~~~~~~~~~~~~G-a~~v~iG 105 (241)
T PRK13585 36 EVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEK----IIEAV-GVPVQLG---GGI-RSAEDAASLLDLG-VDRVILG 105 (241)
T ss_pred HHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHH----HHHHc-CCcEEEc---CCc-CCHHHHHHHHHcC-CCEEEEC
Confidence 34455567899999987754332211122333333 33322 2456665 555 322 56677888 9999887
Q ss_pred ecc--CCCChhhHhhhCCCCCE-EEEEEeeCC---CCCcCCHH-HHHHHHHHHhhhcCCCcEEEeC
Q 004263 268 LIR--GTKTLDLIKTEFPLGKY-LFAGVVDGR---NIWANDLA-SSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 268 ~~~--~~~~l~~l~~~~p~~k~-l~lGvVdgr---n~~~ed~~-~~~~~l~~~~~~~~~~~l~vsp 326 (765)
-.. .++.+..+.+.++.++. +++-+.+++ ..|.++.. ...+.++.+ +..|.+.+.+.+
T Consensus 106 s~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~-~~~G~~~i~~~~ 170 (241)
T PRK13585 106 TAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRF-EELGAGSILFTN 170 (241)
T ss_pred hHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHH-HHcCCCEEEEEe
Confidence 654 22334444445665543 333322211 23433222 223333333 335667776543
No 111
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=61.31 E-value=47 Score=33.54 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCcc
Q 004263 587 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD 666 (765)
Q Consensus 587 l~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D 666 (765)
+.+.++.+.+.|+++||++.+.+. ..++.+.+. .+...+... ++.+.+| +-++...++++|
T Consensus 23 ~~~~~~~~~~~gv~~v~lr~~~~~---------~~~~~~~~~-~~~~~~~~~--~~~l~~~-------~~~~~a~~~gad 83 (212)
T PRK00043 23 LLEVVEAALEGGVTLVQLREKGLD---------TRERLELAR-ALKELCRRY--GVPLIVN-------DRVDLALAVGAD 83 (212)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCC---------HHHHHHHHH-HHHHHHHHh--CCeEEEe-------ChHHHHHHcCCC
Confidence 345566788899999999987642 123333222 233333222 3456665 237788889999
Q ss_pred EEEEec
Q 004263 667 VITIEN 672 (765)
Q Consensus 667 ~isiE~ 672 (765)
++++..
T Consensus 84 ~vh~~~ 89 (212)
T PRK00043 84 GVHLGQ 89 (212)
T ss_pred EEecCc
Confidence 999974
No 112
>PRK08508 biotin synthase; Provisional
Probab=59.28 E-value=2e+02 Score=30.85 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHccCCCCceEEEEeccCCh-hHHHHHHHcCCccEEEEe--cCCC---------C-hhhHH---Hhhhcc
Q 004263 624 LKWAVHSFRITNCGVQDTTQVHTHMCYSNF-NDIIHSIMDMDADVITIE--NSRS---------D-EKLLS---VFREGV 687 (765)
Q Consensus 624 l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~-~~i~~~l~~l~~D~isiE--~~r~---------~-~~~L~---~~~~~~ 687 (765)
.++..+.++.+-+..+ .+++|.|.|.. .+.+..|.+.++|.+++. ++++ . .+.++ ..++
T Consensus 74 ~e~~~ei~~~ik~~~p---~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~-- 148 (279)
T PRK08508 74 LEYVAEAAKAVKKEVP---GLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKE-- 148 (279)
T ss_pred HHHHHHHHHHHHhhCC---CcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHH--
Confidence 3455666665543322 35677787754 367888889999999865 3221 1 12233 3333
Q ss_pred cCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcC
Q 004263 688 KYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNP 731 (765)
Q Consensus 688 ~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsP 731 (765)
.+-.+.-|++-++ -|+.|++++.+..+. .++++.+-+++
T Consensus 149 -~Gi~v~sg~I~Gl---GEt~ed~~~~l~~lr-~L~~~svpl~~ 187 (279)
T PRK08508 149 -AGLGLCSGGIFGL---GESWEDRISFLKSLA-SLSPHSTPINF 187 (279)
T ss_pred -cCCeecceeEEec---CCCHHHHHHHHHHHH-cCCCCEEeeCC
Confidence 3456777777765 588999999998874 56766555443
No 113
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=58.17 E-value=59 Score=34.14 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCCeEEeeccccccCCChHHHH--------------HHHHHHHHHHccCCCCcEEEEeccCC-----C
Q 004263 187 VYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQ--------------AFSDAYSELQSSLSGLNVLIETYFAD-----V 247 (765)
Q Consensus 187 ~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~--------------~~~~~y~~l~~~~~~~~i~l~tyfg~-----~ 247 (765)
...++++.|.++||++|+||=|.--.-.+...++ ..-+..+.+.+.. ...+++-+||.. +
T Consensus 15 ~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n~~~~~G~ 93 (242)
T cd04724 15 TTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYNPILQYGL 93 (242)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecCHHHHhCH
Confidence 3446778899999999999965421112222222 2222333333322 245788888764 4
Q ss_pred chhhHHHHhcCCCccEEEE
Q 004263 248 PAETYKILTSLKGVTGFGF 266 (765)
Q Consensus 248 ~~~~~~~l~~l~~vd~l~l 266 (765)
...++.+.+.. ++|+-+
T Consensus 94 -~~fi~~~~~aG-~~giii 110 (242)
T cd04724 94 -ERFLRDAKEAG-VDGLII 110 (242)
T ss_pred -HHHHHHHHHCC-CcEEEE
Confidence 45577788888 999888
No 114
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=58.02 E-value=1.2e+02 Score=32.17 Aligned_cols=94 Identities=17% Similarity=0.086 Sum_probs=57.5
Q ss_pred CceEEEEeccC--ChhHHHHHHHcCCccE--EEEe-cCCC-ChhhHHHhhhcccCCceeccccccCC-CCCCCCHHHHHH
Q 004263 641 TTQVHTHMCYS--NFNDIIHSIMDMDADV--ITIE-NSRS-DEKLLSVFREGVKYRAGIGPGVYDIH-SPRIPSTEEIAD 713 (765)
Q Consensus 641 ~~~I~~H~C~g--~~~~i~~~l~~l~~D~--isiE-~~r~-~~~~L~~~~~~~~~~~~l~~GVvd~~-s~~ve~~eev~~ 713 (765)
+..|++|+..+ ...++++.|.+.+++. +.+- ..++ +.+.+..+.+ .|-.++++...+. .....+.+...+
T Consensus 149 ~~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~---~G~~i~~~~~~~~~~~~~~~~~~~~~ 225 (293)
T cd00530 149 GVPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRNDDPDYLLKIAA---LGAYLEFDGIGKDKIFGYPSDETRAD 225 (293)
T ss_pred CCeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCCCHHHHHHHHh---CCCEEEeCCCCcccccCCCCHHHHHH
Confidence 35789997643 4567788887766532 2232 1122 4556666655 1334444432221 112334566778
Q ss_pred HHHHHHhhcCCCcEEEcCCCCCCC
Q 004263 714 RINKMLAVLESNILWVNPDCGLKT 737 (765)
Q Consensus 714 ~i~~a~~~i~~~~l~vsPdCGL~~ 737 (765)
.++++++..+.+++.+++|++..+
T Consensus 226 ~l~~~~~~~~~d~ill~TD~p~~~ 249 (293)
T cd00530 226 AVKALIDEGYGDRLLLSHDVFRKS 249 (293)
T ss_pred HHHHHHHCCCcCCEEEeCCcCchh
Confidence 899999999999999999998864
No 115
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=57.88 E-value=2.8e+02 Score=30.17 Aligned_cols=229 Identities=14% Similarity=0.129 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeEEeccceeeecCCceeeCcEEEccCCCCcccc
Q 004263 460 EDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMT 539 (765)
Q Consensus 460 ~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~~~g~~~~~~t~~~~~P~i~g~i~~~~p~~ 539 (765)
.|.|...-=+.|.++-+.-.++|-|+|-.+-|.-+.+.+. - |+.- . ....+.
T Consensus 44 nE~LnlT~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~la------d-----------y~le--------d---~v~~in 95 (311)
T COG0646 44 NELLNLTKPDVIEAIHRAYIEAGADIIETNTFGATTIKLA------D-----------YGLE--------D---KVYEIN 95 (311)
T ss_pred hHHHhcCCcHHHHHHHHHHHhccCcEEEecCCCcchhhHh------h-----------hChH--------H---HHHHHH
Confidence 3445555567788888889999999998777665543221 0 1100 0 001111
Q ss_pred hhHHHHHHhccC-----CC-ceEeeechhHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCC
Q 004263 540 VFWSSMAQSMTK-----RP-MKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGL 613 (765)
Q Consensus 540 ~~~~~~a~~~t~-----~~-vK~~ltGPvTll~~s~~~~~~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l 613 (765)
.+-.+.|++..+ +| ..+--.||.+=...... + . .-..+++-.+|++.+..|.+-|+++|-|. ...
T Consensus 96 ~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~~~~-~-~--~v~fd~l~~ay~eq~~~Li~gG~D~iLiE-T~~---- 166 (311)
T COG0646 96 QKAARIARRAADEAGDPKPRFVAGSIGPTNKTLSISP-D-F--AVTFDELVEAYREQVEGLIDGGADLILIE-TIF---- 166 (311)
T ss_pred HHHHHHHHHHHhhcCCCCceEEEEeccCcCCcCCcCC-c-c--cccHHHHHHHHHHHHHHHHhCCCcEEEEe-hhc----
Confidence 222233332221 11 12224567542211111 1 0 12367788899999999999999977664 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccC---------ChhHHHHHHHcCCccEEEEecCCCC--h-hhHH
Q 004263 614 PLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYS---------NFNDIIHSIMDMDADVITIENSRSD--E-KLLS 681 (765)
Q Consensus 614 ~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g---------~~~~i~~~l~~l~~D~isiE~~r~~--~-~~L~ 681 (765)
|. .-++.++.+.+++.+.......|.+|.-.. ..+..+..+..+++|.+++--.-.. | ..|+
T Consensus 167 -----D~-l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~~~~~~vGlNCa~Gp~~m~~~l~ 240 (311)
T COG0646 167 -----DT-LNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSLEHLGPDAVGLNCALGPDEMRPHLR 240 (311)
T ss_pred -----cH-HHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHHHHHhhccCCcEEeeccccCHHHHHHHHH
Confidence 11 234567777777777544445566665432 2357889999999999999843322 1 2233
Q ss_pred HhhhcccCCcee----ccccccCCCC---CCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 004263 682 VFREGVKYRAGI----GPGVYDIHSP---RIPSTEEIADRINKMLAVLESNILWVNPDCGL 735 (765)
Q Consensus 682 ~~~~~~~~~~~l----~~GVvd~~s~---~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL 735 (765)
.+.. + .+..| -.|+=+.... .-++++++.+.+....+.-. -=+|.--||=
T Consensus 241 ~ls~-~-~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~--vnIvGGCCGT 297 (311)
T COG0646 241 ELSR-I-ADAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAEFAEEGG--VNIVGGCCGT 297 (311)
T ss_pred HHHh-c-cCceEEEeCCCCCCcccCCccccCCCHHHHHHHHHHHHHhCC--ceeeccccCC
Confidence 3332 0 01111 1344444443 56789999999998876421 3457777873
No 116
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.97 E-value=37 Score=36.75 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEe
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~ 268 (765)
+++.+..++|+++||+| .++.+++ +++...+.+..+++.+..+ |++..++++.+.++. ||+|.+=-
T Consensus 207 eea~eA~~~GaD~I~LD------n~~~e~l---~~av~~~~~~~~~i~leAs---GGIt~~ni~~ya~tG-vD~Isvgs 272 (288)
T PRK07428 207 EQVQEALEYGADIIMLD------NMPVDLM---QQAVQLIRQQNPRVKIEAS---GNITLETIRAVAETG-VDYISSSA 272 (288)
T ss_pred HHHHHHHHcCCCEEEEC------CCCHHHH---HHHHHHHHhcCCCeEEEEE---CCCCHHHHHHHHHcC-CCEEEEch
Confidence 34445568899999999 3333333 3333334321122333334 778668888999999 99987653
No 117
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=56.78 E-value=1.2e+02 Score=32.76 Aligned_cols=162 Identities=14% Similarity=0.188 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHH-----H----HHcc-CCCCcEEEEeccCCC
Q 004263 178 LSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYS-----E----LQSS-LSGLNVLIETYFADV 247 (765)
Q Consensus 178 ~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~-----~----l~~~-~~~~~i~l~tyfg~~ 247 (765)
..||..|.++..+-|..=+.+|+..+||=|- |+..+++++.+.+.-=|- . +.+. .+.+.+++ |--+-
T Consensus 185 h~lL~~lTda~v~Yl~~Qv~aGAq~lQiFeS-wageLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~~vPmi~--fakG~ 261 (359)
T KOG2872|consen 185 HALLQILTDAIVEYLVYQVVAGAQALQIFES-WAGELSPEDFEEFSLPYLRQIAEAVKKRLPELGLAPVPMIL--FAKGS 261 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-hcccCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCCCCceEE--EEcCc
Confidence 4577788888888888888999999999885 777788776554443332 1 2111 11113333 21112
Q ss_pred chhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCC
Q 004263 248 PAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTS 327 (765)
Q Consensus 248 ~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vsps 327 (765)
...++.++++. +|.++||.+-.+. +... ...+ .+-.=|=+|- ++--.+.+++-+++++..+..|+.+-+++=-
T Consensus 262 -g~~Le~l~~tG-~DVvgLDWTvdp~--ear~-~~g~-~VtlQGNlDP-~~ly~s~e~it~~v~~mv~~fG~~ryI~NLG 334 (359)
T KOG2872|consen 262 -GGALEELAQTG-YDVVGLDWTVDPA--EARR-RVGN-RVTLQGNLDP-GVLYGSKEEITQLVKQMVKDFGKSRYIANLG 334 (359)
T ss_pred -chHHHHHHhcC-CcEEeecccccHH--HHHH-hhCC-ceEEecCCCh-HHhcCCHHHHHHHHHHHHHHhCccceEEecC
Confidence 44789999999 9999999975431 1111 1222 2333455555 3445678999999999999999888887765
Q ss_pred CCCcccccccccccCCcHHHHhHHHHHHHHHHHH
Q 004263 328 CSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEV 361 (765)
Q Consensus 328 C~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el 361 (765)
-|.. |-+ |++ ..+|..|++.++
T Consensus 335 HGi~--p~t-------p~e---~v~~f~E~~h~~ 356 (359)
T KOG2872|consen 335 HGIT--PGT-------PPE---HVAHFVEAVHKI 356 (359)
T ss_pred CCCC--CCC-------CHH---HHHHHHHHHHHh
Confidence 5553 432 444 344566666554
No 118
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=55.82 E-value=25 Score=38.38 Aligned_cols=108 Identities=20% Similarity=0.424 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEE-----------eccCCC
Q 004263 179 SLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIE-----------TYFADV 247 (765)
Q Consensus 179 ~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~-----------tyfg~~ 247 (765)
.-++++..+|.|.+....++|.+.|-+--=.|+.-. .-.+-+.++|.++...... .++|| .|||+-
T Consensus 125 ~sld~V~~AY~eQ~~~ve~~Gg~~ILMASRaLA~~A--~~p~DY~~VY~~lL~q~~~-PVILHWLG~mFDPaL~GYWGs~ 201 (382)
T PF06187_consen 125 ASLDDVIAAYEEQLEAVEAAGGRVILMASRALAAVA--RSPDDYLRVYDRLLSQADE-PVILHWLGDMFDPALAGYWGSA 201 (382)
T ss_dssp --HHHHHHHHHHHHHHHHHTT--EEE---HHHHHH----SHHHHHHHHHHHHHH-SS--EEEEEE-TTT-GGGTTTTS-S
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEeehHHHHHhh--CCHHHHHHHHHHHHHHcCC-CEEEEecccccCcccccccCCC
Confidence 357899999999999999999998766555444211 1245678888888776543 34443 777752
Q ss_pred c-hh----hHHHHh--cCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEE
Q 004263 248 P-AE----TYKILT--SLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAG 291 (765)
Q Consensus 248 ~-~~----~~~~l~--~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lG 291 (765)
. .. +++.+. .-. ||||-+-+-+...+.. +++.+|.+-.+.=|
T Consensus 202 d~~~A~~t~l~lI~~~~~k-VdGIKiSLLD~~~Ei~-lRrrLP~gVr~YTG 250 (382)
T PF06187_consen 202 DLDAAMDTVLELIAAHADK-VDGIKISLLDAEKEIA-LRRRLPEGVRMYTG 250 (382)
T ss_dssp SHHHHHHHHHHHHHHTGGG-EEEEEEES--HHHHHH-HHTS--TT-EEEE-
T ss_pred cHHHHHHHHHHHHHhChhh-cCeeEecccCcHHHHH-HHHhCCccceeecC
Confidence 1 22 233343 224 9999888765322222 33457765444433
No 119
>PRK01060 endonuclease IV; Provisional
Probab=54.45 E-value=73 Score=33.77 Aligned_cols=30 Identities=10% Similarity=0.237 Sum_probs=24.2
Q ss_pred ceEEEEe-ccCChhHHHHHHHcCCccEEEEe
Q 004263 642 TQVHTHM-CYSNFNDIIHSIMDMDADVITIE 671 (765)
Q Consensus 642 ~~I~~H~-C~g~~~~i~~~l~~l~~D~isiE 671 (765)
+++++|+ |++++.+.++.+.++++|++=+-
T Consensus 2 ~~~g~~~~~~~~~~~~l~~~~~~G~d~vEl~ 32 (281)
T PRK01060 2 KLIGAHVSAAGGLEGAVAEAAEIGANAFMIF 32 (281)
T ss_pred CeEEEeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 3566774 66889999999999999999664
No 120
>PRK10508 hypothetical protein; Provisional
Probab=53.53 E-value=22 Score=39.35 Aligned_cols=48 Identities=6% Similarity=0.072 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHH
Q 004263 705 IPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKL 756 (765)
Q Consensus 705 ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~ 756 (765)
+.|+|+|+++|++..+.++.+++++.+.| .+.+...++++.|.++.+.
T Consensus 285 vGtpe~V~~kl~~l~~~~g~del~~~~~~----~~~e~~~~S~~lla~~~~~ 332 (333)
T PRK10508 285 VGDKAKVRHGLQSILRETQADEIMVNGQI----FDHQARLHSFELAMDVKEE 332 (333)
T ss_pred EeCHHHHHHHHHHHHHHHCcCEEEEECCC----CCHHHHHHHHHHHHHHhhh
Confidence 68999999999999999999999999998 3778888999988887664
No 121
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=53.53 E-value=2.9e+02 Score=29.07 Aligned_cols=138 Identities=13% Similarity=0.131 Sum_probs=82.6
Q ss_pred HHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccE
Q 004263 588 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 667 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~ 667 (765)
.+.+..|.++|++.|.+-=|.+.. .+ .+.++.+.+..+ ...+..+ |..+..+ ++...++++|.
T Consensus 23 ~~i~~~L~~~Gv~~iE~g~p~~~~---------~~-----~e~~~~l~~~~~-~~~~~~~-~r~~~~~-v~~a~~~g~~~ 85 (259)
T cd07939 23 LAIARALDEAGVDEIEVGIPAMGE---------EE-----REAIRAIVALGL-PARLIVW-CRAVKED-IEAALRCGVTA 85 (259)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCH---------HH-----HHHHHHHHhcCC-CCEEEEe-ccCCHHH-HHHHHhCCcCE
Confidence 345566789999999996454321 11 123344433222 3445444 4345443 56777889999
Q ss_pred EEEecCCCCh------------------hhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEE
Q 004263 668 ITIENSRSDE------------------KLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWV 729 (765)
Q Consensus 668 isiE~~r~~~------------------~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~v 729 (765)
|.+=.+.|+. +.++..++ .+..+..|..|... -+++.+.+.++++.+ .+++.+.+
T Consensus 86 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~---~~~~~~~~~~~~~~~-~G~~~i~l 158 (259)
T cd07939 86 VHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKD---RGLFVSVGAEDASR---ADPDFLIEFAEVAQE-AGADRLRF 158 (259)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEeeccCCC---CCHHHHHHHHHHHHH-CCCCEEEe
Confidence 8886433321 11222333 24467777766532 468999999988866 68899999
Q ss_pred cCCCCCCCCChhhHHHHHHHHH
Q 004263 730 NPDCGLKTRKYSEVKPALSNMV 751 (765)
Q Consensus 730 sPdCGL~~~~~~~~~~kL~~mv 751 (765)
.-..|..+ |+++..-++.+.
T Consensus 159 ~DT~G~~~--P~~v~~lv~~l~ 178 (259)
T cd07939 159 ADTVGILD--PFTTYELIRRLR 178 (259)
T ss_pred CCCCCCCC--HHHHHHHHHHHH
Confidence 99999774 555544444444
No 122
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.38 E-value=46 Score=36.08 Aligned_cols=66 Identities=12% Similarity=0.143 Sum_probs=41.7
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 191 ~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
++.+..++|++.||+| +++.+++ +++...+....+++.+-.+ |++..+++..+.++. ||.|..=..
T Consensus 211 ea~eal~~gaDiI~LD------nm~~e~v---k~av~~~~~~~~~v~ieaS---GGI~~~ni~~yA~tG-vD~Is~gal 276 (289)
T PRK07896 211 QLDEVLAEGAELVLLD------NFPVWQT---QEAVQRRDARAPTVLLESS---GGLTLDTAAAYAETG-VDYLAVGAL 276 (289)
T ss_pred HHHHHHHcCCCEEEeC------CCCHHHH---HHHHHHHhccCCCEEEEEE---CCCCHHHHHHHHhcC-CCEEEeChh
Confidence 3444568899999999 4444443 3444333222122333334 888568889999999 999887654
No 123
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=52.12 E-value=3.2e+02 Score=29.02 Aligned_cols=144 Identities=13% Similarity=0.023 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHH-HcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccC--CCchhhHHHHhcC
Q 004263 182 DKIIPVYKEVVAELK-AAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFA--DVPAETYKILTSL 258 (765)
Q Consensus 182 ~~L~~~y~~~l~~L~-~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg--~~~~~~~~~l~~l 258 (765)
+++.+.+.+.+.... ..+++..-|=|-.+.....+...+.|....+ ++.... ..+++|+--+ .. .+.++.|.+.
T Consensus 97 ~~l~~~~~~~l~~~~~~~~i~~~~IGEigld~~~~~~q~~~f~~~~~-lA~~~~-~Pv~iH~~~~~~~~-~~~l~~l~~~ 173 (293)
T cd00530 97 EELTDMLIREIEEGIEGTGIKAGIIKEAGGSPAITPLEEKVLRAAAR-AQKETG-VPISTHTQAGLTMG-LEQLRILEEE 173 (293)
T ss_pred HHHHHHHHHHHHhccccCCcCceEEEEeecCCCCCHHHHHHHHHHHH-HHHHHC-CeEEEcCCCCcccc-HHHHHHHHHc
Confidence 345555555554332 2233332332222222233445555555543 333222 4577776543 34 5667777665
Q ss_pred CCcc-----EEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCC-CCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcc
Q 004263 259 KGVT-----GFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGR-NIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLH 332 (765)
Q Consensus 259 ~~vd-----~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgr-n~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h 332 (765)
. +. ..|.+- .++++.+...+..+-.++++.+-.. .....+.+...+.++++.+..+.+++.++||++...
T Consensus 174 g-~~~~~~vi~H~~~---~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~~~ 249 (293)
T cd00530 174 G-VDPSKVVIGHLDR---NDDPDYLLKIAALGAYLEFDGIGKDKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFRKS 249 (293)
T ss_pred C-CChhheEEeCCCC---CCCHHHHHHHHhCCCEEEeCCCCcccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCchh
Confidence 4 32 224442 1234444332223344555432211 111223455677788888888889999999998863
No 124
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=51.98 E-value=52 Score=35.46 Aligned_cols=66 Identities=12% Similarity=0.044 Sum_probs=41.4
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEe
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~ 268 (765)
+++++..++|++.||+| .++.+++.. +...+.+..++..+-.+ |++..++++.+.+++ ||.|..=.
T Consensus 199 eea~ea~~~GaDiI~lD------n~~~e~l~~---~v~~l~~~~~~~~leas---GGI~~~ni~~ya~~G-vD~is~ga 264 (277)
T TIGR01334 199 EQALTVLQASPDILQLD------KFTPQQLHH---LHERLKFFDHIPTLAAA---GGINPENIADYIEAG-IDLFITSA 264 (277)
T ss_pred HHHHHHHHcCcCEEEEC------CCCHHHHHH---HHHHHhccCCCEEEEEE---CCCCHHHHHHHHhcC-CCEEEeCc
Confidence 34566678999999999 444444433 33334321122233334 888667888899999 99886543
No 125
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=51.23 E-value=1e+02 Score=30.51 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccE
Q 004263 588 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 667 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~ 667 (765)
.+.+..+.+.|++.||+-++.+. .+++.+++....+.+... ...+.+|- -++...+.++|+
T Consensus 15 ~~~l~~~~~~gv~~v~lR~k~~~---------~~~~~~~a~~l~~~~~~~---~~~liin~-------~~~la~~~~~dG 75 (180)
T PF02581_consen 15 LEQLEAALAAGVDLVQLREKDLS---------DEELLELARRLAELCQKY---GVPLIIND-------RVDLALELGADG 75 (180)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSS----------HHHHHHHHHHHHHHHHHT---TGCEEEES--------HHHHHHCT-SE
T ss_pred HHHHHHHHHCCCcEEEEcCCCCC---------ccHHHHHHHHHHHHhhcc---eEEEEecC-------CHHHHHhcCCCE
Confidence 34455666789999999998653 345666665555444322 35688883 266677899999
Q ss_pred EEEecCCCChhhHHH-hhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCC
Q 004263 668 ITIENSRSDEKLLSV-FREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPD 732 (765)
Q Consensus 668 isiE~~r~~~~~L~~-~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPd 732 (765)
+++..........+. +.. ++.||. +.|| .++ ++++. ..+.+-+.++|=
T Consensus 76 vHl~~~~~~~~~~r~~~~~----~~~ig~---S~h~-----~~e----~~~a~-~~g~dYv~~gpv 124 (180)
T PF02581_consen 76 VHLGQSDLPPAEARKLLGP----DKIIGA---SCHS-----LEE----AREAE-ELGADYVFLGPV 124 (180)
T ss_dssp EEEBTTSSSHHHHHHHHTT----TSEEEE---EESS-----HHH----HHHHH-HCTTSEEEEETS
T ss_pred EEecccccchHHhhhhccc----ceEEEe---ecCc-----HHH----HHHhh-hcCCCEEEECCc
Confidence 999853222222222 222 344443 3343 344 33332 356677888874
No 126
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=51.08 E-value=32 Score=24.11 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 004263 15 RELKFALESFWDGKSSADELQNVAADL 41 (765)
Q Consensus 15 reLk~A~e~yw~g~i~~~eL~~~~~~~ 41 (765)
..|++.-+.|-+|.||++|+.+.-+.+
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 578888899999999999999877665
No 127
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=50.94 E-value=1.9e+02 Score=32.78 Aligned_cols=74 Identities=18% Similarity=0.119 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHH--Hc
Q 004263 585 LAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSI--MD 662 (765)
Q Consensus 585 ~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l--~~ 662 (765)
+.|-+..++|.+.||+.|+|-+.+-.. +|.. .-..+.+++..+. + ...+|+|.- +.+. ....+ .+
T Consensus 156 e~yv~~akel~~~g~DSIciKDmaGll-------tP~~-ayelVk~iK~~~~-~--pv~lHtH~T-sG~a-~m~ylkAvE 222 (472)
T COG5016 156 EYYVELAKELLEMGVDSICIKDMAGLL-------TPYE-AYELVKAIKKELP-V--PVELHTHAT-SGMA-EMTYLKAVE 222 (472)
T ss_pred HHHHHHHHHHHHcCCCEEEeecccccC-------ChHH-HHHHHHHHHHhcC-C--eeEEecccc-cchH-HHHHHHHHH
Confidence 355566778889999999998866321 2322 1134555555443 3 255666644 4443 23333 56
Q ss_pred CCccEEEEe
Q 004263 663 MDADVITIE 671 (765)
Q Consensus 663 l~~D~isiE 671 (765)
.++|+|-.-
T Consensus 223 AGvD~iDTA 231 (472)
T COG5016 223 AGVDGIDTA 231 (472)
T ss_pred hCcchhhhh
Confidence 788876443
No 128
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=50.54 E-value=2.6e+02 Score=31.25 Aligned_cols=136 Identities=13% Similarity=0.109 Sum_probs=81.9
Q ss_pred HHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEEE
Q 004263 590 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVIT 669 (765)
Q Consensus 590 ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~is 669 (765)
.++.|.++|++.|.+-=|+..+ .+ .+.++.+.+..+ ...+. ..|..+.. -++...++++|.|.
T Consensus 28 ia~~L~~~Gv~~IEvG~p~~~~---------~~-----~e~i~~i~~~~~-~~~i~-~~~r~~~~-di~~a~~~g~~~i~ 90 (365)
T TIGR02660 28 IARALDEAGVDELEVGIPAMGE---------EE-----RAVIRAIVALGL-PARLM-AWCRARDA-DIEAAARCGVDAVH 90 (365)
T ss_pred HHHHHHHcCCCEEEEeCCCCCH---------HH-----HHHHHHHHHcCC-CcEEE-EEcCCCHH-HHHHHHcCCcCEEE
Confidence 4456778999999997555432 11 223344433333 24443 33555554 46778889999998
Q ss_pred EecCCCC--------------h----hhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcC
Q 004263 670 IENSRSD--------------E----KLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNP 731 (765)
Q Consensus 670 iE~~r~~--------------~----~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsP 731 (765)
+=.+.|+ + +.++..++ .+..+..+.-|.. ..+++.+.+.++.+.+ .+++++.+.-
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~---~g~~v~~~~ed~~---r~~~~~l~~~~~~~~~-~Ga~~i~l~D 163 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARD---RGLFVSVGGEDAS---RADPDFLVELAEVAAE-AGADRFRFAD 163 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHh---CCCEEEEeecCCC---CCCHHHHHHHHHHHHH-cCcCEEEEcc
Confidence 8854432 1 11222233 2456777766642 3468888888888765 6889999988
Q ss_pred CCCCCCCChhhHHHHHHHHH
Q 004263 732 DCGLKTRKYSEVKPALSNMV 751 (765)
Q Consensus 732 dCGL~~~~~~~~~~kL~~mv 751 (765)
..|.. +|.++..-++.+.
T Consensus 164 T~G~~--~P~~v~~lv~~l~ 181 (365)
T TIGR02660 164 TVGIL--DPFSTYELVRALR 181 (365)
T ss_pred cCCCC--CHHHHHHHHHHHH
Confidence 88876 4555555554444
No 129
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=50.45 E-value=2.7e+02 Score=27.91 Aligned_cols=73 Identities=22% Similarity=0.368 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCC--CCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcC
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRK--SEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDM 663 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~--~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l 663 (765)
.+.++++.+.++|++.|.+| +..+.-..+ ..++ .++.++. ..+ ..+.+|+-.-+..+.++.+.++
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~---~~Dg~~~~~~~~~~~-----~v~~i~~---~~~--~~v~v~lm~~~~~~~~~~~~~~ 78 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVD---VMDGHFVPNLTFGPP-----VLEALRK---YTD--LPIDVHLMVENPDRYIEDFAEA 78 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEc---CCCCCCCCCcccCHH-----HHHHHHh---cCC--CcEEEEeeeCCHHHHHHHHHHc
Confidence 46678888999999999997 222111111 1111 2333332 222 2344554333445678888899
Q ss_pred CccEEEEe
Q 004263 664 DADVITIE 671 (765)
Q Consensus 664 ~~D~isiE 671 (765)
++|++.+-
T Consensus 79 gadgv~vh 86 (210)
T TIGR01163 79 GADIITVH 86 (210)
T ss_pred CCCEEEEc
Confidence 99997775
No 130
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.40 E-value=62 Score=35.09 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=38.7
Q ss_pred HHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEEEEe
Q 004263 594 LEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVITIE 671 (765)
Q Consensus 594 L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~isiE 671 (765)
..++|+++||+|. .+++ .+++++..++.. . .++.+-.. |+.+ +.+....++++|+|++=
T Consensus 215 al~~gaDiI~LDn-----------m~~e-~vk~av~~~~~~----~--~~v~ieaS-GGI~~~ni~~yA~tGvD~Is~g 274 (289)
T PRK07896 215 VLAEGAELVLLDN-----------FPVW-QTQEAVQRRDAR----A--PTVLLESS-GGLTLDTAAAYAETGVDYLAVG 274 (289)
T ss_pred HHHcCCCEEEeCC-----------CCHH-HHHHHHHHHhcc----C--CCEEEEEE-CCCCHHHHHHHHhcCCCEEEeC
Confidence 3578999999993 2333 345555543332 2 23445545 6665 67888999999999987
No 131
>PRK15108 biotin synthase; Provisional
Probab=49.98 E-value=2.2e+02 Score=31.59 Aligned_cols=112 Identities=15% Similarity=0.170 Sum_probs=65.9
Q ss_pred HHHHHHHcCCCeEEeecccccc---CCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 004263 191 VVAELKAAGATWIQFDEPTLVL---DLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (765)
Q Consensus 191 ~l~~L~~~G~~~VQiDEP~L~~---d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD 267 (765)
..+...+.|++-|- ++. +.+..+.+.+.+++..+.+ . .+.++ .+.|.++.+.+..|.+.. +|.++++
T Consensus 84 ~a~~~~~~G~~~i~-----i~~~g~~p~~~~~e~i~~~i~~ik~-~-~i~v~--~s~G~ls~e~l~~LkeAG-ld~~n~~ 153 (345)
T PRK15108 84 SARKAKAAGSTRFC-----MGAAWKNPHERDMPYLEQMVQGVKA-M-GLETC--MTLGTLSESQAQRLANAG-LDYYNHN 153 (345)
T ss_pred HHHHHHHcCCCEEE-----EEecCCCCCcchHHHHHHHHHHHHh-C-CCEEE--EeCCcCCHHHHHHHHHcC-CCEEeec
Confidence 34455677987652 221 2223356677777776653 1 23443 446766567788999999 9999998
Q ss_pred eccC---------CCChhhHhh----hCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhh
Q 004263 268 LIRG---------TKTLDLIKT----EFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAG 315 (765)
Q Consensus 268 ~~~~---------~~~l~~l~~----~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~ 315 (765)
+... .++++...+ ....+..+..|+|=|.. |+.++.++.+..+.+
T Consensus 154 leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg---Et~ed~v~~~~~l~~ 211 (345)
T PRK15108 154 LDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG---ETVKDRAGLLLQLAN 211 (345)
T ss_pred cccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC---CCHHHHHHHHHHHHh
Confidence 8753 233333222 11235678888888864 555555555555544
No 132
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=49.12 E-value=3.6e+02 Score=28.73 Aligned_cols=137 Identities=10% Similarity=0.114 Sum_probs=80.8
Q ss_pred HHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEE
Q 004263 589 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 668 (765)
Q Consensus 589 ~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~i 668 (765)
+.++.|.++|++.|++=-|.... ++ .++.+.+.. ......+..+ +..+..+ ++...++++|.|
T Consensus 26 ~i~~~L~~~Gv~~IEvG~P~~~~---------~~-----~~~~~~l~~-~~~~~~v~~~-~r~~~~d-i~~a~~~g~~~i 88 (262)
T cd07948 26 EIAKALDAFGVDYIELTSPAASP---------QS-----RADCEAIAK-LGLKAKILTH-IRCHMDD-ARIAVETGVDGV 88 (262)
T ss_pred HHHHHHHHcCCCEEEEECCCCCH---------HH-----HHHHHHHHh-CCCCCcEEEE-ecCCHHH-HHHHHHcCcCEE
Confidence 44566789999999997665432 11 122222222 1222455555 4466554 677778899999
Q ss_pred EEecCCCC-----------hhhHHH-------hhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEc
Q 004263 669 TIENSRSD-----------EKLLSV-------FREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVN 730 (765)
Q Consensus 669 siE~~r~~-----------~~~L~~-------~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vs 730 (765)
.+-.+-|+ -+.++. .++ .+..+..++.|+... +++.+.+.++++.+ .+++++.+.
T Consensus 89 ~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~---~G~~v~~~~eda~r~---~~~~l~~~~~~~~~-~g~~~i~l~ 161 (262)
T cd07948 89 DLVFGTSPFLREASHGKSITEIIESAVEVIEFVKS---KGIEVRFSSEDSFRS---DLVDLLRVYRAVDK-LGVNRVGIA 161 (262)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEEEEeeCCC---CHHHHHHHHHHHHH-cCCCEEEEC
Confidence 88643221 122222 222 256788888876432 37777777777654 588999998
Q ss_pred CCCCCCCCChhhHHHHHHHHH
Q 004263 731 PDCGLKTRKYSEVKPALSNMV 751 (765)
Q Consensus 731 PdCGL~~~~~~~~~~kL~~mv 751 (765)
-.-|.. +|+++..-++.+.
T Consensus 162 Dt~G~~--~P~~v~~~~~~~~ 180 (262)
T cd07948 162 DTVGIA--TPRQVYELVRTLR 180 (262)
T ss_pred CcCCCC--CHHHHHHHHHHHH
Confidence 888866 4555555544443
No 133
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=48.68 E-value=3.3e+02 Score=28.28 Aligned_cols=147 Identities=15% Similarity=0.198 Sum_probs=89.1
Q ss_pred HHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccE
Q 004263 588 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 667 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~ 667 (765)
.+.+..|.++|+++|.+==|.-....|.+. +. .+.++.+.+..+ +..+.. +|... .+.++.+.+.+++.
T Consensus 22 ~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~-~~-------~~~i~~l~~~~~-~~~~~~-l~~~~-~~~i~~a~~~g~~~ 90 (265)
T cd03174 22 LEIAEALDEAGVDSIEVGSGASPKAVPQME-DD-------WEVLRAIRKLVP-NVKLQA-LVRNR-EKGIERALEAGVDE 90 (265)
T ss_pred HHHHHHHHHcCCCEEEeccCcCccccccCC-CH-------HHHHHHHHhccC-CcEEEE-EccCc-hhhHHHHHhCCcCE
Confidence 344566778999999988776543334432 22 223333333332 344433 34333 45688888999998
Q ss_pred EEEecCCC--------------Ch----hhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEE
Q 004263 668 ITIENSRS--------------DE----KLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWV 729 (765)
Q Consensus 668 isiE~~r~--------------~~----~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~v 729 (765)
+.+=..-+ .+ +.++..++ .+..+.+.+.++..+ ..+++++.+.++.+.+ ++++.+.+
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~~-~~~~~~l~~~~~~~~~-~g~~~i~l 165 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKE---AGLEVEGSLEDAFGC-KTDPEYVLEVAKALEE-AGADEISL 165 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEEEEeecCC-CCCHHHHHHHHHHHHH-cCCCEEEe
Confidence 87763222 12 12233343 356777777776654 5688899888888865 68889999
Q ss_pred cCCCCCCCCChhhHHHHHHHHHH
Q 004263 730 NPDCGLKTRKYSEVKPALSNMVA 752 (765)
Q Consensus 730 sPdCGL~~~~~~~~~~kL~~mv~ 752 (765)
...-|. .+|+++..-++.+.+
T Consensus 166 ~Dt~G~--~~P~~v~~li~~l~~ 186 (265)
T cd03174 166 KDTVGL--ATPEEVAELVKALRE 186 (265)
T ss_pred chhcCC--cCHHHHHHHHHHHHH
Confidence 888775 456665555555544
No 134
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=48.03 E-value=2.8e+02 Score=31.04 Aligned_cols=129 Identities=13% Similarity=0.150 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
++++.|.++|++.|.+=-|.. ++++.+.++.. .+... +..+.++.-.. .+-++.+.+.. ++.+++=+.
T Consensus 26 ~ia~~L~~~Gv~~IEvG~p~~----~~~~~e~i~~i----~~~~~--~~~v~~~~r~~-~~di~~a~~~g-~~~i~i~~~ 93 (363)
T TIGR02090 26 EIARKLDELGVDVIEAGFPIA----SEGEFEAIKKI----SQEGL--NAEICSLARAL-KKDIDKAIDCG-VDSIHTFIA 93 (363)
T ss_pred HHHHHHHHcCCCEEEEeCCCC----ChHHHHHHHHH----HhcCC--CcEEEEEcccC-HHHHHHHHHcC-cCEEEEEEc
Confidence 456678889999999865533 23444443333 22111 22233332222 34466777888 999888544
Q ss_pred cC------------CCChhhHhhh--C--CCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCccc
Q 004263 270 RG------------TKTLDLIKTE--F--PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHT 333 (765)
Q Consensus 270 ~~------------~~~l~~l~~~--~--p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h~ 333 (765)
.+ .+.++.+.+. + ..+..+.+++.|+ .+.|++.+++.++.+.+ .|++++++....|.+ .
T Consensus 94 ~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda---~r~~~~~l~~~~~~~~~-~g~~~i~l~DT~G~~-~ 168 (363)
T TIGR02090 94 TSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDA---TRTDIDFLIKVFKRAEE-AGADRINIADTVGVL-T 168 (363)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeec---CCCCHHHHHHHHHHHHh-CCCCEEEEeCCCCcc-C
Confidence 21 0122222221 1 2356788888876 57899999999998866 688999999988866 3
Q ss_pred cc
Q 004263 334 AV 335 (765)
Q Consensus 334 P~ 335 (765)
|.
T Consensus 169 P~ 170 (363)
T TIGR02090 169 PQ 170 (363)
T ss_pred HH
Confidence 54
No 135
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=47.55 E-value=2.1e+02 Score=29.52 Aligned_cols=138 Identities=17% Similarity=0.221 Sum_probs=76.4
Q ss_pred HHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCCh---hHHHHHHHcCC
Q 004263 588 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNF---NDIIHSIMDMD 664 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~---~~i~~~l~~l~ 664 (765)
.+.++.|.++|++.|.+=-|...+. ..+ .. ..+...... ..+.++ |.... ...++.+.+.+
T Consensus 17 ~~i~~~L~~~Gv~~iEvg~~~~~~~-------~~~---~v-~~~~~~~~~----~~~~~~-~~~~~~~i~~~~~~~~~~g 80 (237)
T PF00682_consen 17 LEIAKALDEAGVDYIEVGFPFASED-------DFE---QV-RRLREALPN----ARLQAL-CRANEEDIERAVEAAKEAG 80 (237)
T ss_dssp HHHHHHHHHHTTSEEEEEHCTSSHH-------HHH---HH-HHHHHHHHS----SEEEEE-EESCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCEEEEcccccCHH-------HHH---Hh-hhhhhhhcc----ccccee-eeehHHHHHHHHHhhHhcc
Confidence 3445567889999999884444321 111 11 222222222 344443 32332 23355556799
Q ss_pred ccEEEEecCCCC--------------hhhH----HHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCc
Q 004263 665 ADVITIENSRSD--------------EKLL----SVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNI 726 (765)
Q Consensus 665 ~D~isiE~~r~~--------------~~~L----~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~ 726 (765)
+|.+.+-.+.++ ++.+ +..++ .+..+.+|..|.. .-+++++.+.++.+.+. +++.
T Consensus 81 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~---~g~~v~~~~~~~~---~~~~~~~~~~~~~~~~~-g~~~ 153 (237)
T PF00682_consen 81 IDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKE---LGYEVAFGCEDAS---RTDPEELLELAEALAEA-GADI 153 (237)
T ss_dssp SSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHH---TTSEEEEEETTTG---GSSHHHHHHHHHHHHHH-T-SE
T ss_pred CCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHh---cCCceEeCccccc---cccHHHHHHHHHHHHHc-CCeE
Confidence 999988855544 2222 22233 3556777777753 34678888888887664 8899
Q ss_pred EEEcCCCCCCCCChhhHHHHHHHH
Q 004263 727 LWVNPDCGLKTRKYSEVKPALSNM 750 (765)
Q Consensus 727 l~vsPdCGL~~~~~~~~~~kL~~m 750 (765)
+.+.-.-|..+ |.++..-++.+
T Consensus 154 i~l~Dt~G~~~--P~~v~~lv~~~ 175 (237)
T PF00682_consen 154 IYLADTVGIMT--PEDVAELVRAL 175 (237)
T ss_dssp EEEEETTS-S---HHHHHHHHHHH
T ss_pred EEeeCccCCcC--HHHHHHHHHHH
Confidence 99988877764 44444433333
No 136
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=47.40 E-value=3.7e+02 Score=28.40 Aligned_cols=135 Identities=15% Similarity=0.096 Sum_probs=76.6
Q ss_pred HHHHHHHHcCCCeEEeecc------ccccCCC-hHHHHHHHHHHHHHHccCCCCcEE--EEeccCCCchhhHHHHhcCCC
Q 004263 190 EVVAELKAAGATWIQFDEP------TLVLDLD-SHKLQAFSDAYSELQSSLSGLNVL--IETYFADVPAETYKILTSLKG 260 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP------~L~~d~~-~~~~~~~~~~y~~l~~~~~~~~i~--l~tyfg~~~~~~~~~l~~l~~ 260 (765)
++++.|.++|+++|.+==| ......+ ....+.++..-... +..++. +...+++. .+ ++...+..
T Consensus 26 ~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~----~~~~~~~~~~~~~~~~-~~-i~~a~~~g- 98 (263)
T cd07943 26 AIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEAL----KQAKLGVLLLPGIGTV-DD-LKMAADLG- 98 (263)
T ss_pred HHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhc----cCCEEEEEecCCccCH-HH-HHHHHHcC-
Confidence 4556688899999998511 1111111 11223322221211 123332 22223444 33 56667778
Q ss_pred ccEEEEEeccCC-CChhhHhhh-CCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcccccc
Q 004263 261 VTGFGFDLIRGT-KTLDLIKTE-FPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVD 336 (765)
Q Consensus 261 vd~l~lD~~~~~-~~l~~l~~~-~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h~P~~ 336 (765)
++.+.+-+.-+. .++....+. -..+..+.+.+.++ .+.+++.+++.++.+.+ .|++.+++.-+.|.+ .|.+
T Consensus 99 ~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~---~~~~~~~~~~~~~~~~~-~G~d~i~l~DT~G~~-~P~~ 171 (263)
T cd07943 99 VDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMS---HMASPEELAEQAKLMES-YGADCVYVTDSAGAM-LPDD 171 (263)
T ss_pred CCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEec---cCCCHHHHHHHHHHHHH-cCCCEEEEcCCCCCc-CHHH
Confidence 999888554321 222222221 12456788888776 45688999999998865 688999999999977 3544
No 137
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=47.31 E-value=3.7e+02 Score=28.46 Aligned_cols=29 Identities=10% Similarity=0.283 Sum_probs=22.0
Q ss_pred ceEEEEeccCCh------hHHHHHHHcCCccEEEEe
Q 004263 642 TQVHTHMCYSNF------NDIIHSIMDMDADVITIE 671 (765)
Q Consensus 642 ~~I~~H~C~g~~------~~i~~~l~~l~~D~isiE 671 (765)
..+. ||-|-|- ...++.+.++++|++.+-
T Consensus 88 ~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviip 122 (256)
T TIGR00262 88 IPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVA 122 (256)
T ss_pred CCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEEC
Confidence 4555 8888764 566778889999998876
No 138
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.85 E-value=69 Score=34.43 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=38.2
Q ss_pred HHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEEE
Q 004263 591 VEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVIT 669 (765)
Q Consensus 591 v~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~is 669 (765)
+....++|+++||+|.+... .++.+++ ..-.+. + ++.+-.. |+++ +.+..+.++++|+|+
T Consensus 195 a~~A~~~GaDiI~LDn~~~e------------~l~~~v~---~~~~~~-~--~~~ieAs-GgIt~~ni~~ya~~GvD~Is 255 (273)
T PRK05848 195 AKNAMNAGADIVMCDNMSVE------------EIKEVVA---YRNANY-P--HVLLEAS-GNITLENINAYAKSGVDAIS 255 (273)
T ss_pred HHHHHHcCCCEEEECCCCHH------------HHHHHHH---HhhccC-C--CeEEEEE-CCCCHHHHHHHHHcCCCEEE
Confidence 33445789999999987432 2233333 221111 1 2334434 7765 668888999999999
Q ss_pred Ee
Q 004263 670 IE 671 (765)
Q Consensus 670 iE 671 (765)
+=
T Consensus 256 vG 257 (273)
T PRK05848 256 SG 257 (273)
T ss_pred eC
Confidence 87
No 139
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=46.82 E-value=68 Score=34.70 Aligned_cols=67 Identities=10% Similarity=0.045 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
+++++..++|++.||+|- ++++++.... ..+.+..+++.+-.+ |++..+++..+.++. ||.|..=..
T Consensus 200 eqa~ea~~agaDiI~LDn------~~~e~l~~av---~~~~~~~~~~~leaS---GGI~~~ni~~yA~tG-vD~Is~gal 266 (284)
T PRK06096 200 KEAIAALRAQPDVLQLDK------FSPQQATEIA---QIAPSLAPHCTLSLA---GGINLNTLKNYADCG-IRLFITSAP 266 (284)
T ss_pred HHHHHHHHcCCCEEEECC------CCHHHHHHHH---HHhhccCCCeEEEEE---CCCCHHHHHHHHhcC-CCEEEECcc
Confidence 345566788999999983 4444444333 333221122333334 888667888899999 999865443
No 140
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.14 E-value=42 Score=36.34 Aligned_cols=59 Identities=15% Similarity=0.273 Sum_probs=37.3
Q ss_pred HHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEEE
Q 004263 591 VEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVIT 669 (765)
Q Consensus 591 v~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~is 669 (765)
+.+..++|+++||+|.- ++++ ++.+++.. +. ++.+-.. |+.+ +.+.....+++|+||
T Consensus 210 a~~a~~agaDiImLDnm-----------spe~-l~~av~~~-------~~--~~~leaS-GGI~~~ni~~yA~tGVD~Is 267 (290)
T PRK06559 210 AEEAAAAGADIIMLDNM-----------SLEQ-IEQAITLI-------AG--RSRIECS-GNIDMTTISRFRGLAIDYVS 267 (290)
T ss_pred HHHHHHcCCCEEEECCC-----------CHHH-HHHHHHHh-------cC--ceEEEEE-CCCCHHHHHHHHhcCCCEEE
Confidence 33445789999999952 3333 22333322 21 3445555 6654 567888999999999
Q ss_pred Ee
Q 004263 670 IE 671 (765)
Q Consensus 670 iE 671 (765)
.=
T Consensus 268 ~g 269 (290)
T PRK06559 268 SG 269 (290)
T ss_pred eC
Confidence 87
No 141
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=45.81 E-value=5.6e+02 Score=33.51 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEE-eccC-------
Q 004263 580 CYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTH-MCYS------- 651 (765)
Q Consensus 580 ~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H-~C~g------- 651 (765)
.+++...+++.+..|.+.|+++|-+.= ++ +. ...+.++.+.+.+.+....+..+++. +|+.
T Consensus 143 ~del~~~y~eq~~~L~~~GvD~iliET------i~----d~-~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~ 211 (1178)
T TIGR02082 143 YDELVDAYTEQAKGLLDGGVDLLLIET------CF----DT-LNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLS 211 (1178)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEec------cC----CH-HHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCC
Confidence 467788999999999999999876641 11 11 12345566666654332334567777 6642
Q ss_pred --ChhHHHHHHHcCCccEEEEecCCC--Ch-hhHHHhhhcccCCceecccccc------CCCCCCCCHHHHHHHHHHHHh
Q 004263 652 --NFNDIIHSIMDMDADVITIENSRS--DE-KLLSVFREGVKYRAGIGPGVYD------IHSPRIPSTEEIADRINKMLA 720 (765)
Q Consensus 652 --~~~~i~~~l~~l~~D~isiE~~r~--~~-~~L~~~~~~~~~~~~l~~GVvd------~~s~~ve~~eev~~~i~~a~~ 720 (765)
++...+..+..+++++|++--+.. .+ ..++.+.. + ....++|++ ....+-.++++..+.+.+..+
T Consensus 212 G~~~~~~~~~l~~~~~~avGlNCs~gP~~m~~~l~~l~~-~---~~~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~~~ 287 (1178)
T TIGR02082 212 GQTIEAFLTSLEHAGIDMIGLNCALGPDEMRPHLKHLSE-H---AEAYVSCHPNAGLPNAFGEYDLTPDELAKALADFAA 287 (1178)
T ss_pred CCcHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHHHHH-h---cCceEEEEeCCCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 234667777788999999985432 22 33444433 1 112333332 222344688999999888876
Q ss_pred hcCCCcEEEcCCCCCCCCChhhHHHHHHHHHH
Q 004263 721 VLESNILWVNPDCGLKTRKYSEVKPALSNMVA 752 (765)
Q Consensus 721 ~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~ 752 (765)
.- .--+|.=-||-. ++-.++|+.++.
T Consensus 288 ~g--gv~IIGGCCGTt----PeHI~ala~~l~ 313 (1178)
T TIGR02082 288 EG--GLNIVGGCCGTT----PDHIRAIAEAVK 313 (1178)
T ss_pred hC--CCcEEEecCCCC----HHHHHHHHHHhh
Confidence 41 245688888855 344555555443
No 142
>PRK10812 putative DNAse; Provisional
Probab=45.47 E-value=4e+02 Score=28.31 Aligned_cols=143 Identities=19% Similarity=0.178 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCc---cEEEEEeccCCCChhhHhhhCCCCCEEEEEEee
Q 004263 218 KLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGV---TGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVD 294 (765)
Q Consensus 218 ~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~v---d~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVd 294 (765)
..+.|+...+ ++... +..+.+|+- +.. .+.++.|.+.. + .++.-=| .++.+.+...+..+-.+|+|-+-
T Consensus 109 Q~~vf~~ql~-lA~e~-~~Pv~iH~r-~a~-~~~l~iL~~~~-~~~~~~v~H~f---sG~~~~a~~~~~~G~~is~~g~~ 180 (265)
T PRK10812 109 QQESFRHHIQ-IGREL-NKPVIVHTR-DAR-ADTLAILREEK-VTDCGGVLHCF---TEDRETAGKLLDLGFYISFSGIV 180 (265)
T ss_pred HHHHHHHHHH-HHHHh-CCCeEEEee-Cch-HHHHHHHHhhc-CCCCCEEEEee---cCCHHHHHHHHHCCCEEEECeee
Confidence 3455554443 33332 245777765 344 56777777643 3 2332222 23444444322234466665321
Q ss_pred CCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc-ccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCCch
Q 004263 295 GRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL-HTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKD 373 (765)
Q Consensus 295 grn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~-h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~~~~~ 373 (765)
+ +. -.+.++++.+.+|.+||.+.|||+.+ .+|+ .....-|. .+....+++.++. .+..+..
T Consensus 181 t---~~-----~~~~~~~~~~~ipldrlLlETD~P~~~p~~~--~g~~n~P~----~i~~v~~~ia~l~----g~~~eei 242 (265)
T PRK10812 181 T---FR-----NAEQLRDAARYVPLDRLLVETDSPYLAPVPH--RGKENQPA----MVRDVAEYMAVLK----GVSVEEL 242 (265)
T ss_pred e---cC-----ccHHHHHHHHhCChhhEEEecCCCCCCCcCC--CCCCCCcH----HHHHHHHHHHHHh----CCCHHHH
Confidence 1 11 12446677778889999999999986 3332 22222222 3445666776662 2222334
Q ss_pred HHHHHHHHHHHHh
Q 004263 374 EAYFSSNAAAQAS 386 (765)
Q Consensus 374 ~~~~~~~~~~~~~ 386 (765)
...+..|...+-.
T Consensus 243 ~~~~~~N~~~lf~ 255 (265)
T PRK10812 243 AQVTTDNFARLFH 255 (265)
T ss_pred HHHHHHHHHHHHC
Confidence 4556666665553
No 143
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=44.86 E-value=2.1e+02 Score=35.44 Aligned_cols=111 Identities=12% Similarity=0.120 Sum_probs=61.2
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
+.++++.+.|+.+||+-|+- ++.++...+.+....+.... +..++|... .+....++ .| +||--.
T Consensus 23 ~~l~~~l~~g~~~iqlR~K~----~~~~~~~~~a~~l~~l~~~~-~~~liind~--------~~la~~~~-~d-VHlg~~ 87 (755)
T PRK09517 23 GIVDSAISGGVSVVQLRDKN----AGVEDVRAAAKELKELCDAR-GVALVVNDR--------LDVAVELG-LH-VHIGQG 87 (755)
T ss_pred HHHHHHHhcCCCEEEEeCCC----CCHHHHHHHHHHHHHHHHHh-CCeEEEeCh--------HHHHHHcC-CC-eecCCC
Confidence 45556677899999999884 44555555555555554432 256777622 34556788 88 887643
Q ss_pred cCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhc---CCCcEEEeC
Q 004263 270 RGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTV---GKDKVVVST 326 (765)
Q Consensus 270 ~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~---~~~~l~vsp 326 (765)
.- .....++.++.++.|++. . .+.+++......+. .+ |++=+.++|
T Consensus 88 dl--~~~~~r~~~~~~~~iG~S---~-----h~~~e~~~~~~~~~-~~g~~gaDYi~~Gp 136 (755)
T PRK09517 88 DT--PYTQARRLLPAHLELGLT---I-----ETLDQLEAVIAQCA-ETGVALPDVIGIGP 136 (755)
T ss_pred cC--CHHHHHHhcCCCCEEEEe---C-----CCHHHHHHHHhhhc-cCCCCCCCEEEECC
Confidence 21 234444445555555443 2 34555432222211 12 266777776
No 144
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.75 E-value=96 Score=33.42 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccC--CCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSL--SGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~--~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD 267 (765)
+++.+..++|++.||+|-. +.+++.. +...+.... +++.+..+ |++..+++..+.++. ||.|..=
T Consensus 193 eea~~a~~agaDiI~LDn~------~~e~l~~---~v~~l~~~~~~~~~~leaS---GGI~~~ni~~yA~tG-vD~Is~g 259 (278)
T PRK08385 193 EDALKAAKAGADIIMLDNM------TPEEIRE---VIEALKREGLRERVKIEVS---GGITPENIEEYAKLD-VDVISLG 259 (278)
T ss_pred HHHHHHHHcCcCEEEECCC------CHHHHHH---HHHHHHhcCcCCCEEEEEE---CCCCHHHHHHHHHcC-CCEEEeC
Confidence 3455567899999999965 3334433 333332211 12334444 788558889999999 9998875
Q ss_pred ec
Q 004263 268 LI 269 (765)
Q Consensus 268 ~~ 269 (765)
..
T Consensus 260 al 261 (278)
T PRK08385 260 AL 261 (278)
T ss_pred hh
Confidence 43
No 145
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=44.16 E-value=2.2e+02 Score=37.05 Aligned_cols=126 Identities=15% Similarity=0.193 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcc-CCCCcEEEE-eccCC---------Cch
Q 004263 181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSS-LSGLNVLIE-TYFAD---------VPA 249 (765)
Q Consensus 181 l~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~-~~~~~i~l~-tyfg~---------~~~ 249 (765)
.+++...|.+.++.|.+.||+.|-+.- + .+-.+..+...+.+...+. .....++++ +.+.. + .
T Consensus 143 ~del~~~y~eq~~~L~~~GvD~iliET-i----~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~-~ 216 (1178)
T TIGR02082 143 YDELVDAYTEQAKGLLDGGVDLLLIET-C----FDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTI-E 216 (1178)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEec-c----CCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcH-H
Confidence 478899999999999999999876652 1 1223344444444433211 113467777 66521 2 3
Q ss_pred hhHHHHhcCCCccEEEEEeccCCCChhhHhhhCC--CCCEEE----EEEeeCCCCCcCCHHHHHHHHHHH
Q 004263 250 ETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFP--LGKYLF----AGVVDGRNIWANDLASSLTTLQDL 313 (765)
Q Consensus 250 ~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p--~~k~l~----lGvVdgrn~~~ed~~~~~~~l~~~ 313 (765)
..+..+..++ ++++++.+..+++.+.++.+.+. .++.++ +|+-+....|-.++++..+.+++.
T Consensus 217 ~~~~~l~~~~-~~avGlNCs~gP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~ 285 (1178)
T TIGR02082 217 AFLTSLEHAG-IDMIGLNCALGPDEMRPHLKHLSEHAEAYVSCHPNAGLPNAFGEYDLTPDELAKALADF 285 (1178)
T ss_pred HHHHHHhcCC-CCEEEeCCCCCHHHHHHHHHHHHHhcCceEEEEeCCCCCCCCCcccCCHHHHHHHHHHH
Confidence 5566667788 99999999987666555443231 122232 244455557777887765555443
No 146
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=43.86 E-value=3.8e+02 Score=27.57 Aligned_cols=139 Identities=15% Similarity=0.093 Sum_probs=73.3
Q ss_pred HHHHHHHcCCcEE--EecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccC-------ChhHHHHH-
Q 004263 590 EVEDLEKAGITVI--QIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYS-------NFNDIIHS- 659 (765)
Q Consensus 590 ev~~L~~aG~~~I--QiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g-------~~~~i~~~- 659 (765)
++++..+.|++.| |+..-.+. ..+.++.+.+..+.+ .+. ++.+.+.++.- ...+.+..
T Consensus 81 ~v~~a~~~Ga~~v~~~~~~~~~~---------~~~~~~~i~~v~~~~-~~~--g~~~iie~~~~g~~~~~~~~~~~i~~~ 148 (235)
T cd00958 81 SVEDAVRLGADAVGVTVYVGSEE---------EREMLEELARVAAEA-HKY--GLPLIAWMYPRGPAVKNEKDPDLIAYA 148 (235)
T ss_pred CHHHHHHCCCCEEEEEEecCCch---------HHHHHHHHHHHHHHH-HHc--CCCEEEEEeccCCcccCccCHHHHHHH
Confidence 4566778999865 88754321 233344444433333 222 24455554431 01122333
Q ss_pred ---HHcCCccEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCC
Q 004263 660 ---IMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLK 736 (765)
Q Consensus 660 ---l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~ 736 (765)
..++++|.|.+... .+.+.++.+.+. +...|+=+-.+...+.++..+.+..+++ .|.+.+.+..+-- .
T Consensus 149 ~~~a~~~GaD~Ik~~~~-~~~~~~~~i~~~------~~~pvv~~GG~~~~~~~~~l~~~~~~~~-~Ga~gv~vg~~i~-~ 219 (235)
T cd00958 149 ARIGAELGADIVKTKYT-GDAESFKEVVEG------CPVPVVIAGGPKKDSEEEFLKMVYDAME-AGAAGVAVGRNIF-Q 219 (235)
T ss_pred HHHHHHHCCCEEEecCC-CCHHHHHHHHhc------CCCCEEEeCCCCCCCHHHHHHHHHHHHH-cCCcEEEechhhh-c
Confidence 56789999999632 256666666541 1112332234445688888888888876 5666665554432 2
Q ss_pred CCChhhHHHHHHH
Q 004263 737 TRKYSEVKPALSN 749 (765)
Q Consensus 737 ~~~~~~~~~kL~~ 749 (765)
.-.+..+.++|+.
T Consensus 220 ~~dp~~~~~~~~~ 232 (235)
T cd00958 220 RPDPVAMLRAISA 232 (235)
T ss_pred CCCHHHHHHHHHH
Confidence 2234444444443
No 147
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.85 E-value=48 Score=35.94 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=36.3
Q ss_pred HHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEEEEe
Q 004263 593 DLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVITIE 671 (765)
Q Consensus 593 ~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~isiE 671 (765)
+..++|+++||+|-- ++++ ++.++... +. ++.+-.. |+.+ +.+..+..+++|+||.=
T Consensus 220 eA~~aGaDiImLDnm-----------spe~-l~~av~~~-------~~--~~~lEaS-GGIt~~ni~~yA~tGVD~IS~g 277 (294)
T PRK06978 220 TALAHGAQSVLLDNF-----------TLDM-MREAVRVT-------AG--RAVLEVS-GGVNFDTVRAFAETGVDRISIG 277 (294)
T ss_pred HHHHcCCCEEEECCC-----------CHHH-HHHHHHhh-------cC--CeEEEEE-CCCCHHHHHHHHhcCCCEEEeC
Confidence 345789999999953 3333 22233322 21 3445545 6654 56788899999999987
No 148
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=42.60 E-value=2.4e+02 Score=31.35 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEecccc-------cccCCCCC----C---CCHHHHHHHHHHHHHHHHc-cCCCCceE
Q 004263 580 CYQIALAIKDEVEDLEKAGITVIQIDEAA-------LREGLPLR----K---SEQDFYLKWAVHSFRITNC-GVQDTTQV 644 (765)
Q Consensus 580 ~~~la~al~~ev~~L~~aG~~~IQiDEPa-------L~~~l~l~----~---~~~~~~l~~~v~a~~~~~~-~v~~~~~I 644 (765)
++++...+.+-.+.+.++|++.|+|.-.- |+.....| + .++..++...+++.+.++. .++++..|
T Consensus 139 I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v 218 (353)
T cd04735 139 IEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFIL 218 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceE
Confidence 45667777777777888999999999531 21111111 1 1223344445555555442 11145678
Q ss_pred EEEeccCCh----------hHHHHHHHcCCccEEEEe
Q 004263 645 HTHMCYSNF----------NDIIHSIMDMDADVITIE 671 (765)
Q Consensus 645 ~~H~C~g~~----------~~i~~~l~~l~~D~isiE 671 (765)
.+.+...++ -++++.|.+.++|.|++-
T Consensus 219 ~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs 255 (353)
T cd04735 219 GYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHIS 255 (353)
T ss_pred EEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 888774332 246677778899999885
No 149
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=42.34 E-value=4.2e+02 Score=27.67 Aligned_cols=82 Identities=12% Similarity=0.073 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHH----------HHHHHHHHHHHHccCCCCceEEEEeccCC---
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFY----------LKWAVHSFRITNCGVQDTTQVHTHMCYSN--- 652 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~----------l~~~v~a~~~~~~~v~~~~~I~~H~C~g~--- 652 (765)
...++++.|+++|+++|.||=|.--...+ +...+.. .+...+..+.+-+.. +..+|+-++|..
T Consensus 15 ~~~~~~~~l~~~Gad~iel~iPfsdPv~D--G~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~--~~pv~lm~y~n~~~~ 90 (242)
T cd04724 15 TTLEILKALVEAGADIIELGIPFSDPVAD--GPVIQAASERALANGVTLKDVLELVKEIRKKN--TIPIVLMGYYNPILQ 90 (242)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC--CCCEEEEEecCHHHH
Confidence 44567788899999999999655211110 0000100 012222222222221 234555446553
Q ss_pred --hhHHHHHHHcCCccEEEEe
Q 004263 653 --FNDIIHSIMDMDADVITIE 671 (765)
Q Consensus 653 --~~~i~~~l~~l~~D~isiE 671 (765)
+...++.+.++++|++.+-
T Consensus 91 ~G~~~fi~~~~~aG~~giiip 111 (242)
T cd04724 91 YGLERFLRDAKEAGVDGLIIP 111 (242)
T ss_pred hCHHHHHHHHHHCCCcEEEEC
Confidence 3567888999999999994
No 150
>PRK10812 putative DNAse; Provisional
Probab=42.22 E-value=4.5e+02 Score=27.94 Aligned_cols=97 Identities=11% Similarity=0.020 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCcc---E-EEEecCCCChhhHHHhhhcccCCceecccccc
Q 004263 624 LKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD---V-ITIENSRSDEKLLSVFREGVKYRAGIGPGVYD 699 (765)
Q Consensus 624 l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D---~-isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd 699 (765)
.+.+...++.+.+- +..|.+|+ .+...++++.|.+.+++ + ++.- ..+.+.++.+.+ .|-.+++|-+-
T Consensus 110 ~~vf~~ql~lA~e~---~~Pv~iH~-r~a~~~~l~iL~~~~~~~~~~v~H~f--sG~~~~a~~~~~---~G~~is~~g~~ 180 (265)
T PRK10812 110 QESFRHHIQIGREL---NKPVIVHT-RDARADTLAILREEKVTDCGGVLHCF--TEDRETAGKLLD---LGFYISFSGIV 180 (265)
T ss_pred HHHHHHHHHHHHHh---CCCeEEEe-eCchHHHHHHHHhhcCCCCCEEEEee--cCCHHHHHHHHH---CCCEEEECeee
Confidence 34444444444332 46689994 46667788888765442 2 2222 224566666655 13345544222
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 004263 700 IHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKT 737 (765)
Q Consensus 700 ~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~ 737 (765)
+. .+ .+.++++++.+|.+++.+.+||...+
T Consensus 181 t~----~~----~~~~~~~~~~ipldrlLlETD~P~~~ 210 (265)
T PRK10812 181 TF----RN----AEQLRDAARYVPLDRLLVETDSPYLA 210 (265)
T ss_pred ec----Cc----cHHHHHHHHhCChhhEEEecCCCCCC
Confidence 21 11 24567778889999999999998763
No 151
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=41.84 E-value=4.4e+02 Score=27.77 Aligned_cols=142 Identities=14% Similarity=0.238 Sum_probs=81.8
Q ss_pred HHHHHHHHHcCCcEEEeccc------ccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceE--EEEeccCChhHHHHH
Q 004263 588 KDEVEDLEKAGITVIQIDEA------ALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQV--HTHMCYSNFNDIIHS 659 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDEP------aL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I--~~H~C~g~~~~i~~~ 659 (765)
.+.++.|.++|++.|.+=-| ...-. +. ..++.+ .++.++ ...+ .+.+ .++.++++..+ ++.
T Consensus 25 ~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~-~~-~~~~~e----~i~~~~---~~~~-~~~~~~~~~~~~~~~~~-i~~ 93 (263)
T cd07943 25 RAIARALDAAGVPLIEVGHGDGLGGSSLNYG-FA-AHTDEE----YLEAAA---EALK-QAKLGVLLLPGIGTVDD-LKM 93 (263)
T ss_pred HHHHHHHHHcCCCEEEeecCCCCCCcccccC-CC-CCChHH----HHHHHH---Hhcc-CCEEEEEecCCccCHHH-HHH
Confidence 34556678899999988633 11111 11 122222 222222 2222 2333 23334666554 577
Q ss_pred HHcCCccEEEEecCCCChhh----HHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 004263 660 IMDMDADVITIENSRSDEKL----LSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGL 735 (765)
Q Consensus 660 l~~l~~D~isiE~~r~~~~~----L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL 735 (765)
..+.++|.+.+-.+-++.+. ++..++ .+..+...+.++.. -+++.+.+.++++.+ .+++.+.+.-..|.
T Consensus 94 a~~~g~~~iri~~~~s~~~~~~~~i~~ak~---~G~~v~~~~~~~~~---~~~~~~~~~~~~~~~-~G~d~i~l~DT~G~ 166 (263)
T cd07943 94 AADLGVDVVRVATHCTEADVSEQHIGAARK---LGMDVVGFLMMSHM---ASPEELAEQAKLMES-YGADCVYVTDSAGA 166 (263)
T ss_pred HHHcCCCEEEEEechhhHHHHHHHHHHHHH---CCCeEEEEEEeccC---CCHHHHHHHHHHHHH-cCCCEEEEcCCCCC
Confidence 77889999988755554332 333344 35567777766632 477888888888754 68899999888887
Q ss_pred CCCChhhHHHHHHH
Q 004263 736 KTRKYSEVKPALSN 749 (765)
Q Consensus 736 ~~~~~~~~~~kL~~ 749 (765)
.+ |.++..-++.
T Consensus 167 ~~--P~~v~~lv~~ 178 (263)
T cd07943 167 ML--PDDVRERVRA 178 (263)
T ss_pred cC--HHHHHHHHHH
Confidence 64 4444333333
No 152
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=41.20 E-value=64 Score=32.85 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCCeEEeec---cccccCCChHHHHHHHHHHHHHHccCC-CCcEEEEeccCCCchhhHHHHhcCCCccE
Q 004263 188 YKEVVAELKAAGATWIQFDE---PTLVLDLDSHKLQAFSDAYSELQSSLS-GLNVLIETYFADVPAETYKILTSLKGVTG 263 (765)
Q Consensus 188 y~~~l~~L~~~G~~~VQiDE---P~L~~d~~~~~~~~~~~~y~~l~~~~~-~~~i~l~tyfg~~~~~~~~~l~~l~~vd~ 263 (765)
+.+.++.+.++|+++||+|. +... ..+ -..+.+ +.+.+..+ ...++|-+| + . .+.++.+.+.. +|+
T Consensus 18 ~~~~~~~~~~~G~~~i~l~~~d~~~~~-~~~-~~~~~~----~~i~~~~~~~~~v~l~v~-d-~-~~~i~~~~~~g-~d~ 87 (220)
T PRK05581 18 LGEEVKAVEAAGADWIHVDVMDGHFVP-NLT-IGPPVV----EAIRKVTKLPLDVHLMVE-N-P-DRYVPDFAKAG-ADI 87 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCccCCcCC-CcC-cCHHHH----HHHHhcCCCcEEEEeeeC-C-H-HHHHHHHHHcC-CCE
Confidence 45677788999999999985 3211 100 012222 22222111 124666666 3 2 33456667888 999
Q ss_pred --EEEE
Q 004263 264 --FGFD 267 (765)
Q Consensus 264 --l~lD 267 (765)
+|.+
T Consensus 88 v~vh~~ 93 (220)
T PRK05581 88 ITFHVE 93 (220)
T ss_pred EEEeec
Confidence 6665
No 153
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=41.14 E-value=3.8e+02 Score=28.10 Aligned_cols=86 Identities=15% Similarity=0.235 Sum_probs=56.9
Q ss_pred CceEEEEeccCChh----HHHHHHHc--CCccEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHH
Q 004263 641 TTQVHTHMCYSNFN----DIIHSIMD--MDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADR 714 (765)
Q Consensus 641 ~~~I~~H~C~g~~~----~i~~~l~~--l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~ 714 (765)
++.+++|+-.+|-. .+++.+.+ ++.+-+-||- .|++.+..+-+ -+-.+|+-|.+++ =++++.++.
T Consensus 127 dvPviVHTPr~nK~e~t~~ildi~~~~~l~~~lvvIDH--~N~etv~~vld---~e~~vGlTvqPgK----lt~~eAveI 197 (254)
T COG1099 127 DVPVIVHTPRRNKKEATSKILDILIESGLKPSLVVIDH--VNEETVDEVLD---EEFYVGLTVQPGK----LTVEEAVEI 197 (254)
T ss_pred CCcEEEeCCCCcchhHHHHHHHHHHHcCCChhheehhc--ccHHHHHHHHh---ccceEEEEecCCc----CCHHHHHHH
Confidence 57899999988744 45555543 4566777773 25677775433 1334666666653 356676666
Q ss_pred HHHHHhhcCCCcEEEcCCCCCCCCC
Q 004263 715 INKMLAVLESNILWVNPDCGLKTRK 739 (765)
Q Consensus 715 i~~a~~~i~~~~l~vsPdCGL~~~~ 739 (765)
+++- +++++++|.|||-....
T Consensus 198 V~ey----~~~r~ilnSD~~s~~sd 218 (254)
T COG1099 198 VREY----GAERIILNSDAGSAASD 218 (254)
T ss_pred HHHh----CcceEEEeccccccccc
Confidence 6554 47999999999987653
No 154
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=41.08 E-value=2.3e+02 Score=29.31 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=40.8
Q ss_pred HHHHHHHHcC-CcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccE
Q 004263 589 DEVEDLEKAG-ITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 667 (765)
Q Consensus 589 ~ev~~L~~aG-~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~ 667 (765)
+.++.+.+.| +++||+=|+.+. ..++++.+...... +... +..+.++ +-++....+++|+
T Consensus 30 ~~l~~al~~G~v~~vQlR~K~l~---------~~~~~~~a~~l~~l-~~~~--gv~liIN-------d~~dlA~~~~adG 90 (221)
T PRK06512 30 KLLRAALQGGDVASVILPQYGLD---------EATFQKQAEKLVPV-IQEA--GAAALIA-------GDSRIAGRVKADG 90 (221)
T ss_pred HHHHHHHcCCCccEEEEeCCCCC---------HHHHHHHHHHHHHH-HHHh--CCEEEEe-------CHHHHHHHhCCCE
Confidence 3445566789 799999887753 24455555444333 3322 2456666 3367777899999
Q ss_pred EEEe
Q 004263 668 ITIE 671 (765)
Q Consensus 668 isiE 671 (765)
+++-
T Consensus 91 VHLg 94 (221)
T PRK06512 91 LHIE 94 (221)
T ss_pred EEEC
Confidence 9997
No 155
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=41.08 E-value=1.3e+02 Score=30.95 Aligned_cols=65 Identities=22% Similarity=0.271 Sum_probs=40.8
Q ss_pred HHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEE
Q 004263 589 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 668 (765)
Q Consensus 589 ~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~i 668 (765)
..+.+..+.|+++||+=|..... .++.+.+.++-..+ ..- +++..++ +-++.-.+.++|++
T Consensus 25 ~~ve~al~~Gv~~vQlR~K~~~~---------~~~~~~a~~~~~lc-~~~--~v~liIN-------d~~dlA~~~~AdGV 85 (211)
T COG0352 25 EWVEAALKGGVTAVQLREKDLSD---------EEYLALAEKLRALC-QKY--GVPLIIN-------DRVDLALAVGADGV 85 (211)
T ss_pred HHHHHHHhCCCeEEEEecCCCCh---------HHHHHHHHHHHHHH-HHh--CCeEEec-------CcHHHHHhCCCCEE
Confidence 34556668899999998765432 33445554444333 322 3455555 34677778999999
Q ss_pred EEec
Q 004263 669 TIEN 672 (765)
Q Consensus 669 siE~ 672 (765)
++-.
T Consensus 86 HlGq 89 (211)
T COG0352 86 HLGQ 89 (211)
T ss_pred EcCC
Confidence 9974
No 156
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=40.85 E-value=2e+02 Score=37.57 Aligned_cols=126 Identities=19% Similarity=0.272 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccC-CCCcEEEEecc-C---------CCch
Q 004263 181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSL-SGLNVLIETYF-A---------DVPA 249 (765)
Q Consensus 181 l~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~-~~~~i~l~tyf-g---------~~~~ 249 (765)
.+++...|.+.++.|.+.||+.|-+.- + .+-.+..+...+.+...+.. ....++++.-| + ++ .
T Consensus 159 ~del~~~y~eQi~~L~e~GVDllliET-i----~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~-e 232 (1229)
T PRK09490 159 FDELVAAYREQTRGLIEGGADLILIET-I----FDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTT-E 232 (1229)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEee-e----CCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcH-H
Confidence 368888999999999999999876652 1 12234444444444432211 12456665444 1 12 3
Q ss_pred hhHHHHhcCCCccEEEEEeccCCCChhhHhhhCC--CCCEEE----EEEeeCCCCCcCCHHHHHHHHHHH
Q 004263 250 ETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFP--LGKYLF----AGVVDGRNIWANDLASSLTTLQDL 313 (765)
Q Consensus 250 ~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p--~~k~l~----lGvVdgrn~~~ed~~~~~~~l~~~ 313 (765)
..+..+..++ ++++++.+..++..+.++.+.+. .+..++ +|+-+....|-.++++..+.+++.
T Consensus 233 a~~~~l~~~~-~~avGlNCs~GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~ 301 (1229)
T PRK09490 233 AFWNSLRHAK-PLSIGLNCALGADELRPYVEELSRIADTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEF 301 (1229)
T ss_pred HHHHHHhcCC-CCEEEEcCCCcHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 4455556788 99999999987766655543221 223444 576666678888888766555443
No 157
>COG1839 Uncharacterized conserved protein [Function unknown]
Probab=40.21 E-value=1.5e+02 Score=28.52 Aligned_cols=114 Identities=18% Similarity=0.249 Sum_probs=57.2
Q ss_pred CCcE-EEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEEEEe-cCC
Q 004263 598 GITV-IQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVITIE-NSR 674 (765)
Q Consensus 598 G~~~-IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~isiE-~~r 674 (765)
|+++ |-+.|.+-..-....+ +-++..+.+.+...++.++. ..++-+- ..|. .++..+...+ .+.+|- ++.
T Consensus 42 ~~kfgiAf~EAsg~rLvR~~G-ND~eL~~lA~ena~~I~AGH----vFVI~lr-na~PINvLn~iK~vp-eV~~I~~ATA 114 (162)
T COG1839 42 GLKFGIAFNEASGPRLVRYTG-NDEELVKLAIENALKIGAGH----VFVILLR-NAYPINVLNAIKNVP-EVCRIYAATA 114 (162)
T ss_pred CceEEEEeecccCCeeEEecC-CcHHHHHHHHHHHHHhcCCc----EEEEEec-CccchHHHHHHhcCh-hhheEEeecC
Confidence 6776 7788766211111111 23456667776666654442 1222222 2222 3455554443 223333 223
Q ss_pred CChhhHHHhhhcccCCceeccccccCCCC-CCCCHHHHHHHHHHHHhhcC
Q 004263 675 SDEKLLSVFREGVKYRAGIGPGVYDIHSP-RIPSTEEIADRINKMLAVLE 723 (765)
Q Consensus 675 ~~~~~L~~~~~~~~~~~~l~~GVvd~~s~-~ve~~eev~~~i~~a~~~i~ 723 (765)
++++.+-+-.+ ...=.+||||+.+| .+|+-+++.+|= +.++.++
T Consensus 115 NP~qVIVa~te----~grgvlGVvDG~sp~gvE~d~d~~~Rr-~~lr~Ig 159 (162)
T COG1839 115 NPLQVIVAETE----QGRGVLGVVDGYSPLGVETDEDIAERR-ELLRKIG 159 (162)
T ss_pred CCeEEEEEEcC----CCceEEEEecCCCCcccccHHHHHHHH-HHHHHhc
Confidence 33332221111 23567999999997 589988887763 4445544
No 158
>PLN02389 biotin synthase
Probab=39.72 E-value=5.1e+02 Score=29.22 Aligned_cols=133 Identities=12% Similarity=0.097 Sum_probs=73.6
Q ss_pred HHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEE
Q 004263 590 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVI 668 (765)
Q Consensus 590 ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~i 668 (765)
.++.+.+.|++-|.+=. +.+.. .+.+...++..+.++.+.+ . .+.++.+.|-.+ +.+..|.++++|.+
T Consensus 124 ~a~~~~~~G~~~~~ivt-s~rg~-----~~e~~~~e~i~eiir~ik~-~----~l~i~~s~G~l~~E~l~~LkeAGld~~ 192 (379)
T PLN02389 124 AAKRAKEAGSTRFCMGA-AWRDT-----VGRKTNFNQILEYVKEIRG-M----GMEVCCTLGMLEKEQAAQLKEAGLTAY 192 (379)
T ss_pred HHHHHHHcCCCEEEEEe-cccCC-----CCChhHHHHHHHHHHHHhc-C----CcEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 34455677987655411 11111 1112234667777776642 2 233556666443 77889999999987
Q ss_pred EEe--cCCC---------C----hhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhh------cCCCcE
Q 004263 669 TIE--NSRS---------D----EKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAV------LESNIL 727 (765)
Q Consensus 669 siE--~~r~---------~----~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~------i~~~~l 727 (765)
.+. ++++ . ++.++...+ .+-.++.|++=++ -|+.+++++.+..+.+. ++...+
T Consensus 193 ~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~---~Gi~v~sg~IiGl---gEt~edrv~~l~~Lr~L~~~~~~v~l~~l 266 (379)
T PLN02389 193 NHNLDTSREYYPNVITTRSYDDRLETLEAVRE---AGISVCSGGIIGL---GEAEEDRVGLLHTLATLPEHPESVPINAL 266 (379)
T ss_pred EeeecCChHHhCCcCCCCCHHHHHHHHHHHHH---cCCeEeEEEEECC---CCCHHHHHHHHHHHHhcccCCcEEecccc
Confidence 654 3231 1 233444444 3557788888777 37888877777654332 222344
Q ss_pred EEcCCCCCCCCC
Q 004263 728 WVNPDCGLKTRK 739 (765)
Q Consensus 728 ~vsPdCGL~~~~ 739 (765)
.--|+..|...+
T Consensus 267 ~P~~GTpL~~~~ 278 (379)
T PLN02389 267 VAVKGTPLEDQK 278 (379)
T ss_pred eecCCCcCCCCC
Confidence 555677666543
No 159
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=39.63 E-value=1.4e+02 Score=32.19 Aligned_cols=98 Identities=16% Similarity=0.109 Sum_probs=51.4
Q ss_pred HHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHcc-C-CCCce--EEEEeccCChhHHHHHHHcCCc
Q 004263 590 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCG-V-QDTTQ--VHTHMCYSNFNDIIHSIMDMDA 665 (765)
Q Consensus 590 ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~-v-~~~~~--I~~H~C~g~~~~i~~~l~~l~~ 665 (765)
.+..|.++|++.|.+==|.+... ..++++.+.+. . ++.+. .++++..++++..++.....+.
T Consensus 28 ia~~L~~~Gv~~IE~gfP~~~~~--------------e~e~~~~i~~~~~~~~~~~~~al~r~~~~die~a~~~~~~~~~ 93 (284)
T cd07942 28 FFKLLVKIGFKEIEVGFPSASQT--------------DFDFVRELIEEDLIPDDVTIQVLTQAREDLIERTFEALRGAKK 93 (284)
T ss_pred HHHHHHHcCCCEEEEeCCCCCHH--------------HHHHHHHHHHccCCCCCCEEEEEcCCChhhHHHHHHHhCCCCC
Confidence 34567789999998876665431 12334444222 1 12232 3555555555444444334444
Q ss_pred cEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhc
Q 004263 666 DVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 722 (765)
Q Consensus 666 D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i 722 (765)
+.+++-.+-|+......+. -+.+++.+.+.+++++.
T Consensus 94 ~~v~i~~~~Sd~h~~~~~~---------------------~s~~e~~~~~~~~v~~a 129 (284)
T cd07942 94 AIVHLYNATSPLQRRVVFG---------------------KSKEEIIEIAVDGAKLV 129 (284)
T ss_pred CEEEEEEcCCHHHHHHHhC---------------------CCHHHHHHHHHHHHHHH
Confidence 5788876665533322222 24666666666666553
No 160
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=39.47 E-value=5e+02 Score=27.63 Aligned_cols=126 Identities=16% Similarity=0.239 Sum_probs=76.4
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
++++.|.++|++.|++=-|... +.+.+..+.. ..+. ..+++... .-.+. . -++...+.. ++.+++=+.
T Consensus 26 ~i~~~L~~~Gv~~IEvG~P~~~----~~~~~~~~~l-~~~~---~~~~v~~~-~r~~~-~-di~~a~~~g-~~~i~i~~~ 93 (262)
T cd07948 26 EIAKALDAFGVDYIELTSPAAS----PQSRADCEAI-AKLG---LKAKILTH-IRCHM-D-DARIAVETG-VDGVDLVFG 93 (262)
T ss_pred HHHHHHHHcCCCEEEEECCCCC----HHHHHHHHHH-HhCC---CCCcEEEE-ecCCH-H-HHHHHHHcC-cCEEEEEEe
Confidence 5667788999999999877554 2333333222 1111 11233211 11222 2 356667788 999998764
Q ss_pred cC------------CCChhhHhhh--C--CCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 004263 270 RG------------TKTLDLIKTE--F--PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (765)
Q Consensus 270 ~~------------~~~l~~l~~~--~--p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~ 331 (765)
-+ .+.++.+.+. . ..+..+.+++.| ..+.+++.+.+.++.+.+ .|++++++.-.-|.+
T Consensus 94 ~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed---a~r~~~~~l~~~~~~~~~-~g~~~i~l~Dt~G~~ 167 (262)
T cd07948 94 TSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSED---SFRSDLVDLLRVYRAVDK-LGVNRVGIADTVGIA 167 (262)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe---eCCCCHHHHHHHHHHHHH-cCCCEEEECCcCCCC
Confidence 21 1223333221 1 235679999986 456778888888888866 588999999998876
No 161
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=39.29 E-value=5.9e+02 Score=28.43 Aligned_cols=130 Identities=11% Similarity=0.093 Sum_probs=79.6
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
++++.|.++|++.|.+==|... +.+.+.++.. .+.....+ ++++ .....+-++...+.. ++.+++=+.
T Consensus 27 ~ia~~L~~~Gv~~IEvG~p~~~----~~~~e~i~~i----~~~~~~~~--i~~~-~r~~~~di~~a~~~g-~~~i~i~~~ 94 (365)
T TIGR02660 27 AIARALDEAGVDELEVGIPAMG----EEERAVIRAI----VALGLPAR--LMAW-CRARDADIEAAARCG-VDAVHISIP 94 (365)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC----HHHHHHHHHH----HHcCCCcE--EEEE-cCCCHHHHHHHHcCC-cCEEEEEEc
Confidence 4556678889999999766543 3444444444 22111122 3332 322134466777888 998888765
Q ss_pred cCC------------CChhhHhh---h-CCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCccc
Q 004263 270 RGT------------KTLDLIKT---E-FPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHT 333 (765)
Q Consensus 270 ~~~------------~~l~~l~~---~-~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h~ 333 (765)
.+. +.++.+.+ . -..+..+.++.-|+ .+.|++.+++.++.+.+ .|++++.+.-..|.. .
T Consensus 95 ~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~---~r~~~~~l~~~~~~~~~-~Ga~~i~l~DT~G~~-~ 169 (365)
T TIGR02660 95 VSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDA---SRADPDFLVELAEVAAE-AGADRFRFADTVGIL-D 169 (365)
T ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCC---CCCCHHHHHHHHHHHHH-cCcCEEEEcccCCCC-C
Confidence 321 11222211 0 11355788887764 67789999999998876 688999999999976 4
Q ss_pred ccc
Q 004263 334 AVD 336 (765)
Q Consensus 334 P~~ 336 (765)
|..
T Consensus 170 P~~ 172 (365)
T TIGR02660 170 PFS 172 (365)
T ss_pred HHH
Confidence 543
No 162
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=38.69 E-value=87 Score=27.16 Aligned_cols=36 Identities=17% Similarity=0.379 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 004263 444 MDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQE 479 (765)
Q Consensus 444 ~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~ 479 (765)
++|.....+|..|+||.++|++..++...+.-..+.
T Consensus 35 ~~L~~L~~~~e~GEIseeEf~~~E~eLL~rL~~~~~ 70 (79)
T PF05120_consen 35 RELAELQEALEAGEISEEEFERREDELLDRLEEARR 70 (79)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 355666678899999999999998888877665543
No 163
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=38.42 E-value=1.4e+02 Score=30.02 Aligned_cols=74 Identities=24% Similarity=0.319 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCcc
Q 004263 587 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD 666 (765)
Q Consensus 587 l~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D 666 (765)
+.+.++.+.++|+++||+|...... .+......+ .++.++..+ + ..+.+|+..-+..+.++.+.++++|
T Consensus 14 ~~~~~~~~~~~G~~~i~l~~~d~~~-~~~~~~~~~-----~~~~i~~~~---~--~~~~v~l~~~d~~~~~~~~~~~g~d 82 (211)
T cd00429 14 LGEELKRLEEAGADWIHIDVMDGHF-VPNLTFGPP-----VVKALRKHT---D--LPLDVHLMVENPERYIEAFAKAGAD 82 (211)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCC-CCccccCHH-----HHHHHHhhC---C--CcEEEEeeeCCHHHHHHHHHHcCCC
Confidence 5567778889999999998543211 111111111 222333222 1 2344565544555668888899999
Q ss_pred EEEEe
Q 004263 667 VITIE 671 (765)
Q Consensus 667 ~isiE 671 (765)
++.+=
T Consensus 83 gv~vh 87 (211)
T cd00429 83 IITFH 87 (211)
T ss_pred EEEEC
Confidence 97554
No 164
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=38.35 E-value=4.2e+02 Score=27.69 Aligned_cols=126 Identities=7% Similarity=0.046 Sum_probs=60.8
Q ss_pred HHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEecc-
Q 004263 192 VAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR- 270 (765)
Q Consensus 192 l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~- 270 (765)
.+.+.+.|+++|-+-+=.-........++.+++. .+.. ...+++..-..+. ++ +..+.+.. ++++.+.-..
T Consensus 36 a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i----~~~~-~ipv~~~GGi~s~-~~-~~~~l~~G-a~~Viigt~~l 107 (253)
T PRK02083 36 AKRYNEEGADELVFLDITASSEGRDTMLDVVERV----AEQV-FIPLTVGGGIRSV-ED-ARRLLRAG-ADKVSINSAAV 107 (253)
T ss_pred HHHHHHcCCCEEEEEeCCcccccCcchHHHHHHH----HHhC-CCCEEeeCCCCCH-HH-HHHHHHcC-CCEEEEChhHh
Confidence 3344578999887765321111112234444443 3322 2456666333333 33 34455577 8887766432
Q ss_pred -CCCChhhHhhhCCCCCEE-EEEEee----------CCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 004263 271 -GTKTLDLIKTEFPLGKYL-FAGVVD----------GRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 271 -~~~~l~~l~~~~p~~k~l-~lGvVd----------grn~~~ed~~~~~~~l~~~~~~~~~~~l~vsp 326 (765)
+++.++.+.+.+++++.+ ++.+-+ .|+-|..+-....+.++++.+ .|.+.+.+.+
T Consensus 108 ~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~g~~~ii~~~ 174 (253)
T PRK02083 108 ANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEE-LGAGEILLTS 174 (253)
T ss_pred hCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHH-cCCCEEEEcC
Confidence 345555565557655543 444322 222222222233444555533 4667777654
No 165
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=37.42 E-value=3.5e+02 Score=28.79 Aligned_cols=106 Identities=22% Similarity=0.304 Sum_probs=55.6
Q ss_pred cEEEEeccCCCchhhHHHHhcC--CCccEEEEEeccCCCChhhHhhhCCCCCEEEE-EEeeCCCCCcCCHHHHHHHHHHH
Q 004263 237 NVLIETYFADVPAETYKILTSL--KGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFA-GVVDGRNIWANDLASSLTTLQDL 313 (765)
Q Consensus 237 ~i~l~tyfg~~~~~~~~~l~~l--~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~l-GvVdgrn~~~ed~~~~~~~l~~~ 313 (765)
.+.||+= +.- ++.++.|.+. + +.|+.-=|..+.+....+.+ .+-.+|+ |+|+=+| ...++++
T Consensus 127 PviIH~R-~A~-~d~~~iL~~~~~~-~~gi~HcFsGs~e~a~~~~d---~G~yisisG~itfk~---------a~~~~ev 191 (256)
T COG0084 127 PVIIHTR-DAH-EDTLEILKEEGAP-VGGVLHCFSGSAEEARKLLD---LGFYISISGIVTFKN---------AEKLREV 191 (256)
T ss_pred CEEEEcc-ccH-HHHHHHHHhcCCC-CCEEEEccCCCHHHHHHHHH---cCeEEEECceeecCC---------cHHHHHH
Confidence 3555533 223 4555566543 3 45555545433222222222 2223444 3443333 3457777
Q ss_pred hhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHH
Q 004263 314 AGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVN 362 (765)
Q Consensus 314 ~~~~~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~ 362 (765)
++.+|.++|.+=|||+++. |.....-.+-|..++ .-.++++|+.
T Consensus 192 ~~~iPldrLL~ETDsPyl~-P~p~rGkrNeP~~v~----~v~~~iAelk 235 (256)
T COG0084 192 ARELPLDRLLLETDAPYLA-PVPYRGKRNEPAYVR----HVAEKLAELK 235 (256)
T ss_pred HHhCCHhHeEeccCCCCCC-CcCCCCCCCCchHHH----HHHHHHHHHh
Confidence 8889999999999999984 543333333343333 3555555553
No 166
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=37.37 E-value=7.5e+02 Score=29.08 Aligned_cols=126 Identities=12% Similarity=0.081 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCC
Q 004263 585 LAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMD 664 (765)
Q Consensus 585 ~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~ 664 (765)
..+.+.+..+.+.|+++|=|--.+-+. + .+.+.+++++++..+ +..|.+-++.. +.++.-++.+
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p-------~-~~~v~~~V~~l~~~~-----~~pISIDT~~~---~v~eaAL~aG 228 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDD-------D-PDVVKEKVKTALDAL-----DSPVIADTPTL---DELYEALKAG 228 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCC-------c-HHHHHHHHHHHHhhC-----CCcEEEeCCCH---HHHHHHHHcC
Confidence 456677778889999999887544322 1 223556666665432 24577777743 4577777779
Q ss_pred ccEEEEecCCCChh-hHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 004263 665 ADVITIENSRSDEK-LLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGL 735 (765)
Q Consensus 665 ~D~isiE~~r~~~~-~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL 735 (765)
+|.|. +.+..+++ .+....+ ++- ++|=.|...-++.+.+.++++.+.+ .|.+++++-|.=|+
T Consensus 229 AdiIN-sVs~~~~d~~~~l~a~---~g~----~vVlm~~~~~~~~~~l~~~ie~a~~-~Gi~~IIlDPglg~ 291 (499)
T TIGR00284 229 ASGVI-MPDVENAVELASEKKL---PED----AFVVVPGNQPTNYEELAKAVKKLRT-SGYSKVAADPSLSP 291 (499)
T ss_pred CCEEE-ECCccchhHHHHHHHH---cCC----eEEEEcCCCCchHHHHHHHHHHHHH-CCCCcEEEeCCCCc
Confidence 99775 42222333 3333333 121 2222222223445777778877654 57778999887775
No 167
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=37.31 E-value=5.2e+02 Score=28.05 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=45.1
Q ss_pred HHHcCCcEEEeccccccc--CCCCC-CCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHH---HHHHHcCCccE
Q 004263 594 LEKAGITVIQIDEAALRE--GLPLR-KSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDI---IHSIMDMDADV 667 (765)
Q Consensus 594 L~~aG~~~IQiDEPaL~~--~l~l~-~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i---~~~l~~l~~D~ 667 (765)
++++|.+.|.+---++.. ++|-- -.++.+ .....+++...++-...+=.-..||+...+ +..+.+.++.+
T Consensus 31 ~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e----~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvag 106 (290)
T TIGR02321 31 AEQAGFGGIWGSGFELSASYAVPDANILSMST----HLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASA 106 (290)
T ss_pred HHHcCCCEEEECHHHHHHHCCCCCcccCCHHH----HHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeE
Confidence 356688888877655443 33311 133444 344445555554423444556678875555 56667899999
Q ss_pred EEEecC
Q 004263 668 ITIENS 673 (765)
Q Consensus 668 isiE~~ 673 (765)
|+||+.
T Consensus 107 i~IEDq 112 (290)
T TIGR02321 107 IVMEDK 112 (290)
T ss_pred EEEeCC
Confidence 999963
No 168
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=37.27 E-value=80 Score=34.31 Aligned_cols=59 Identities=17% Similarity=0.334 Sum_probs=37.7
Q ss_pred HHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEEE
Q 004263 591 VEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVIT 669 (765)
Q Consensus 591 v~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~is 669 (765)
+.+..++|+++||+|-... ++ ++.+++. +++ ++.+-.. |+.+ +.+....++++|+|+
T Consensus 221 a~ea~~~gaDiI~LDn~s~-----------e~-~~~av~~-------~~~--~~~ieaS-GGI~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 221 LDQALKAGADIIMLDNFTT-----------EQ-MREAVKR-------TNG--RALLEVS-GNVTLETLREFAETGVDFIS 278 (296)
T ss_pred HHHHHHcCCCEEEeCCCCh-----------HH-HHHHHHh-------hcC--CeEEEEE-CCCCHHHHHHHHhcCCCEEE
Confidence 3344578999999996543 22 2233332 121 3445555 6665 678888999999999
Q ss_pred Ee
Q 004263 670 IE 671 (765)
Q Consensus 670 iE 671 (765)
+=
T Consensus 279 ~g 280 (296)
T PRK09016 279 VG 280 (296)
T ss_pred eC
Confidence 87
No 169
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=37.27 E-value=5.4e+02 Score=27.38 Aligned_cols=136 Identities=10% Similarity=0.058 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCC-----hHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEE
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLD-----SHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGF 264 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~-----~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l 264 (765)
++++.|.++|+++|.+==|.-..... --+.+.+++...... ++.++....--+....+-+....+.. |+.+
T Consensus 24 ~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~l~~a~~~g-v~~i 99 (266)
T cd07944 24 AIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK---GNTKIAVMVDYGNDDIDLLEPASGSV-VDMI 99 (266)
T ss_pred HHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc---cCCEEEEEECCCCCCHHHHHHHhcCC-cCEE
Confidence 45667889999999887664421100 001222333222211 12344443222221012344456777 9988
Q ss_pred EEEeccCCCChhhHhh---hC-CCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcccccc
Q 004263 265 GFDLIRGTKTLDLIKT---EF-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVD 336 (765)
Q Consensus 265 ~lD~~~~~~~l~~l~~---~~-p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h~P~~ 336 (765)
++-+.. .+++.+.+ .. ..+..+.+++.|+-. .+++.+.+.++++.+ .|++++++.-+.|.+ .|.+
T Consensus 100 ri~~~~--~~~~~~~~~i~~ak~~G~~v~~~~~~a~~---~~~~~~~~~~~~~~~-~g~~~i~l~DT~G~~-~P~~ 168 (266)
T cd07944 100 RVAFHK--HEFDEALPLIKAIKEKGYEVFFNLMAISG---YSDEELLELLELVNE-IKPDVFYIVDSFGSM-YPED 168 (266)
T ss_pred EEeccc--ccHHHHHHHHHHHHHCCCeEEEEEEeecC---CCHHHHHHHHHHHHh-CCCCEEEEecCCCCC-CHHH
Confidence 886543 23443332 11 135678999998754 688999999999876 588999999999987 3654
No 170
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=37.07 E-value=1.1e+02 Score=32.96 Aligned_cols=81 Identities=25% Similarity=0.306 Sum_probs=51.7
Q ss_pred CCCeEEeeccccccCCCh-HHHHHHHHHHHHHHccCCCCcEEEEec-cCCCchhhHHHHhcCCCccEEEEEecc--CCCC
Q 004263 199 GATWIQFDEPTLVLDLDS-HKLQAFSDAYSELQSSLSGLNVLIETY-FADVPAETYKILTSLKGVTGFGFDLIR--GTKT 274 (765)
Q Consensus 199 G~~~VQiDEP~L~~d~~~-~~~~~~~~~y~~l~~~~~~~~i~l~ty-fg~~~~~~~~~l~~l~~vd~l~lD~~~--~~~~ 274 (765)
--+.+-+|||.+.+|... +.+-.|-+.|++-.. ..|+++|+ |+++ ..++ =..+++|--. -.++
T Consensus 174 ~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~----aTVllTTH~~~di--------~~lc-~rv~~I~~Gqlv~dg~ 240 (325)
T COG4586 174 PPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQ----ATVLLTTHIFDDI--------ATLC-DRVLLIDQGQLVFDGT 240 (325)
T ss_pred CCcEEEecCCccCcchhHHHHHHHHHHHHHHhhC----ceEEEEecchhhH--------HHhh-hheEEeeCCcEeeccc
Confidence 357899999999998653 234444444443322 46777765 4544 3455 5567777543 1467
Q ss_pred hhhHhhhCCCCCEEEEEE
Q 004263 275 LDLIKTEFPLGKYLFAGV 292 (765)
Q Consensus 275 l~~l~~~~p~~k~l~lGv 292 (765)
++.+...|.+.|.+++=+
T Consensus 241 l~~l~~~f~~~k~~~~el 258 (325)
T COG4586 241 LAQLQEQFGPYKEFSVEL 258 (325)
T ss_pred HHHHHHHhCCceEEEEEE
Confidence 888887787778887765
No 171
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=36.91 E-value=9e+02 Score=31.80 Aligned_cols=154 Identities=14% Similarity=0.144 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccC--------
Q 004263 580 CYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYS-------- 651 (765)
Q Consensus 580 ~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g-------- 651 (765)
.+++...+++.++.|.+.|+++|-+.= . . +. ...+.++.+.+...+....+..+++.+.+-
T Consensus 159 ~del~~~y~eQi~~L~e~GVDllliET-i-~--------d~-~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~ls 227 (1229)
T PRK09490 159 FDELVAAYREQTRGLIEGGADLILIET-I-F--------DT-LNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLS 227 (1229)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEee-e-C--------CH-HHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCC
Confidence 466778999999999999999876641 1 1 11 123445556555543323234555555541
Q ss_pred --ChhHHHHHHHcCCccEEEEecCCC--Ch-hhHHHhhhcccCCceec----cccccCCCCCCCCHHHHHHHHHHHHhhc
Q 004263 652 --NFNDIIHSIMDMDADVITIENSRS--DE-KLLSVFREGVKYRAGIG----PGVYDIHSPRIPSTEEIADRINKMLAVL 722 (765)
Q Consensus 652 --~~~~i~~~l~~l~~D~isiE~~r~--~~-~~L~~~~~~~~~~~~l~----~GVvd~~s~~ve~~eev~~~i~~a~~~i 722 (765)
+....+..+..+++++|++--+.. .+ ..|+.+.. . .+..|+ .|.-+....+-.++++..+.+.+..+.
T Consensus 228 G~~~ea~~~~l~~~~~~avGlNCs~GP~~m~~~l~~l~~-~-~~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~~~- 304 (1229)
T PRK09490 228 GQTTEAFWNSLRHAKPLSIGLNCALGADELRPYVEELSR-I-ADTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEFAES- 304 (1229)
T ss_pred CCcHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHH-h-cCCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHc-
Confidence 223566666788999999985432 22 23444432 1 011111 233222234446899999999888763
Q ss_pred CCCcEEEcCCCCCCCCChhhHHHHHHHHHH
Q 004263 723 ESNILWVNPDCGLKTRKYSEVKPALSNMVA 752 (765)
Q Consensus 723 ~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~ 752 (765)
+ .--+|.=-||-. ++-.++|+.+++
T Consensus 305 G-~v~IIGGCCGTt----PeHI~ala~~l~ 329 (1229)
T PRK09490 305 G-FLNIVGGCCGTT----PEHIAAIAEAVA 329 (1229)
T ss_pred C-CCCEEEecCCCC----HHHHHHHHHHHh
Confidence 2 145688888855 344555555443
No 172
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.64 E-value=79 Score=34.12 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=35.4
Q ss_pred HHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEEEEe
Q 004263 593 DLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVITIE 671 (765)
Q Consensus 593 ~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~isiE 671 (765)
+..++|+++||+|-- ++++ ++.++... +. +..+-.. |+.+ +.+.....+++|+||+=
T Consensus 208 ea~~~gaDiImLDn~-----------s~e~-l~~av~~~-------~~--~~~leaS-GgI~~~ni~~yA~tGVD~Is~g 265 (281)
T PRK06543 208 PVLAAGVDTIMLDNF-----------SLDD-LREGVELV-------DG--RAIVEAS-GNVNLNTVGAIASTGVDVISVG 265 (281)
T ss_pred HHHhcCCCEEEECCC-----------CHHH-HHHHHHHh-------CC--CeEEEEE-CCCCHHHHHHHHhcCCCEEEeC
Confidence 345789999999953 3333 23333322 21 1234444 6654 56778889999999987
No 173
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=36.40 E-value=86 Score=27.20 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=29.3
Q ss_pred cHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHH
Q 004263 14 KRELKFALESFWDGKSSADELQNVAADLRASIWNQM 49 (765)
Q Consensus 14 ~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q 49 (765)
+++|...-.+|-.|+||++++.+..+++-.+.-..+
T Consensus 34 ~~~L~~L~~~~e~GEIseeEf~~~E~eLL~rL~~~~ 69 (79)
T PF05120_consen 34 RRELAELQEALEAGEISEEEFERREDELLDRLEEAR 69 (79)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 477888888999999999999999988866554433
No 174
>PRK14847 hypothetical protein; Provisional
Probab=36.04 E-value=4.3e+02 Score=29.33 Aligned_cols=141 Identities=8% Similarity=0.016 Sum_probs=74.6
Q ss_pred HHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccC--CCCceE--EEEeccCChhHHHHHHHcCCccE
Q 004263 592 EDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGV--QDTTQV--HTHMCYSNFNDIIHSIMDMDADV 667 (765)
Q Consensus 592 ~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v--~~~~~I--~~H~C~g~~~~i~~~l~~l~~D~ 667 (765)
+.|.+.|++.|.+==|+..+. + .++.+.+.+.. +.++.| +.++...+++..++...+++.+.
T Consensus 61 ~~L~~lGVd~IEvG~Pa~s~~---------e-----~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~~~~~~ 126 (333)
T PRK14847 61 EQLVAVGLKEIEVAFPSASQT---------D-----FDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAGSPRAI 126 (333)
T ss_pred HHHHHcCCCEEEeeCCCCCHH---------H-----HHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCCCCCCE
Confidence 346788999999888886542 1 33444444432 122333 33333334444555555666677
Q ss_pred EEEecCCCCh-----------hhHHHh-------hhcccC---Cc--eeccccccCCCCCCCCHHHHHHHHHHHHhhcCC
Q 004263 668 ITIENSRSDE-----------KLLSVF-------REGVKY---RA--GIGPGVYDIHSPRIPSTEEIADRINKMLAVLES 724 (765)
Q Consensus 668 isiE~~r~~~-----------~~L~~~-------~~~~~~---~~--~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~ 724 (765)
|++-..-|+. +.++.. ++ .+. +. .|..|.=|.. ..+++-+.+.++.+.+..++
T Consensus 127 Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~-~~~~~~g~~~~V~~~~EDas---Rad~dfL~~~~~~a~~~~ga 202 (333)
T PRK14847 127 VHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRA-LADANPGTQWIYEYSPETFS---LAELDFAREVCDAVSAIWGP 202 (333)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-hccccCCCceEEEEeeecCC---CCCHHHHHHHHHHHHHHhCC
Confidence 8887444321 122211 11 110 11 3455555542 34777777777777777777
Q ss_pred Cc-----EEEcCCCCCCCCChhhHHHHHHHHHH
Q 004263 725 NI-----LWVNPDCGLKTRKYSEVKPALSNMVA 752 (765)
Q Consensus 725 ~~-----l~vsPdCGL~~~~~~~~~~kL~~mv~ 752 (765)
++ +-++--.|.. +|.+....++.|.+
T Consensus 203 ~r~~a~~i~l~DTVG~~--~P~~~~~~i~~l~~ 233 (333)
T PRK14847 203 TPQRKMIINLPATVESS--TANVYADQIEWMHR 233 (333)
T ss_pred CccCCcEEEeCCccccC--CHHHHHHHHHHHHH
Confidence 76 3333334443 56566666665553
No 175
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=35.95 E-value=1.3e+02 Score=32.99 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=46.6
Q ss_pred HHHHHHHH------cCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccE
Q 004263 190 EVVAELKA------AGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTG 263 (765)
Q Consensus 190 ~~l~~L~~------~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~ 263 (765)
+++.+..+ +|++.||+|---+..+......+.++++...+.. +..+-.+ |++..+++.....+. ||.
T Consensus 214 eea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~---~~~lEaS---GGIt~~ni~~yA~tG-VD~ 286 (308)
T PLN02716 214 EEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELING---RFETEAS---GNVTLDTVHKIGQTG-VTY 286 (308)
T ss_pred HHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhCC---CceEEEE---CCCCHHHHHHHHHcC-CCE
Confidence 34555667 9999999997533332222245666666665532 2233334 778667888889999 998
Q ss_pred EEEEec
Q 004263 264 FGFDLI 269 (765)
Q Consensus 264 l~lD~~ 269 (765)
|..=..
T Consensus 287 Is~Gal 292 (308)
T PLN02716 287 ISSGAL 292 (308)
T ss_pred EEeCcc
Confidence 877644
No 176
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.92 E-value=1.5e+02 Score=31.92 Aligned_cols=64 Identities=19% Similarity=0.398 Sum_probs=39.9
Q ss_pred HHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEEE
Q 004263 591 VEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVIT 669 (765)
Q Consensus 591 v~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~is 669 (765)
+.+..++|+++||+|-.. ++ .++.++..++.. +.+ .++.+-.. |+.+ +.+..+.++++|+|+
T Consensus 195 a~~a~~agaDiI~LDn~~-----------~e-~l~~~v~~l~~~--~~~--~~~~leaS-GGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 195 ALKAAKAGADIIMLDNMT-----------PE-EIREVIEALKRE--GLR--ERVKIEVS-GGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred HHHHHHcCcCEEEECCCC-----------HH-HHHHHHHHHHhc--CcC--CCEEEEEE-CCCCHHHHHHHHHcCCCEEE
Confidence 344557899999999653 22 233344433322 111 23445555 6665 678889999999999
Q ss_pred Ee
Q 004263 670 IE 671 (765)
Q Consensus 670 iE 671 (765)
.=
T Consensus 258 ~g 259 (278)
T PRK08385 258 LG 259 (278)
T ss_pred eC
Confidence 87
No 177
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=35.87 E-value=6.5e+02 Score=27.92 Aligned_cols=154 Identities=16% Similarity=0.189 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCc--EEEecccc-cccCCCCC-CCCHHHHHHHHHHHHHHHHccCCCCceEEEEecc
Q 004263 575 PRFETCYQIALAIKDEVEDLEKAGIT--VIQIDEAA-LREGLPLR-KSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCY 650 (765)
Q Consensus 575 ~~~e~~~~la~al~~ev~~L~~aG~~--~IQiDEPa-L~~~l~l~-~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~ 650 (765)
+..++..++..--++.+.+|.++|+. +|||=--. .....|.- ..+++.+......+++.+-+ +.+.++|.+|+-.
T Consensus 100 ~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~-~~p~~kV~lH~~~ 178 (332)
T PF07745_consen 100 SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVRE-VDPNIKVMLHLAN 178 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHT-HSSTSEEEEEES-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHh-cCCCCcEEEEECC
Confidence 56788888888888999999999995 69995432 22212222 24555554444444443333 4457899999875
Q ss_pred CC----hhHHHHHHHc--CCccEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCC
Q 004263 651 SN----FNDIIHSIMD--MDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLES 724 (765)
Q Consensus 651 g~----~~~i~~~l~~--l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~ 724 (765)
|. +.-.++.+.+ .+.|+|++-. |+--+ .+.+.+...+..+.+..+.
T Consensus 179 ~~~~~~~~~~f~~l~~~g~d~DviGlSy-------------------------YP~w~---~~l~~l~~~l~~l~~ry~K 230 (332)
T PF07745_consen 179 GGDNDLYRWFFDNLKAAGVDFDVIGLSY-------------------------YPFWH---GTLEDLKNNLNDLASRYGK 230 (332)
T ss_dssp TTSHHHHHHHHHHHHHTTGG-SEEEEEE--------------------------STTS---T-HHHHHHHHHHHHHHHT-
T ss_pred CCchHHHHHHHHHHHhcCCCcceEEEec-------------------------CCCCc---chHHHHHHHHHHHHHHhCC
Confidence 53 2345566644 4566776642 11100 1566667777776666666
Q ss_pred CcEEEcCCCCCC--------------------CCChhhHHHHHHHHHHHHHHH
Q 004263 725 NILWVNPDCGLK--------------------TRKYSEVKPALSNMVAAAKLL 757 (765)
Q Consensus 725 ~~l~vsPdCGL~--------------------~~~~~~~~~kL~~mv~aa~~~ 757 (765)
+-+++-+++... +.+++-...-|+.|.++.+.+
T Consensus 231 ~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~ 283 (332)
T PF07745_consen 231 PVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNV 283 (332)
T ss_dssp EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS
T ss_pred eeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 666666665555 124555666777777766543
No 178
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=35.30 E-value=82 Score=33.83 Aligned_cols=59 Identities=22% Similarity=0.351 Sum_probs=37.5
Q ss_pred HHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEEEEe
Q 004263 593 DLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVITIE 671 (765)
Q Consensus 593 ~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~isiE 671 (765)
+..++|+++|++|.- ++++ ++.++ +.. ++. ..+.+- |-|+++ +.++....+++|+||+=
T Consensus 203 eAl~agaDiImLDNm-----------~~e~-~~~av---~~l--~~~--~~~~lE-aSGgIt~~ni~~yA~tGVD~IS~g 262 (280)
T COG0157 203 EALEAGADIIMLDNM-----------SPEE-LKEAV---KLL--GLA--GRALLE-ASGGITLENIREYAETGVDVISVG 262 (280)
T ss_pred HHHHcCCCEEEecCC-----------CHHH-HHHHH---HHh--ccC--CceEEE-EeCCCCHHHHHHHhhcCCCEEEeC
Confidence 344689999999952 2322 23333 332 333 234444 447765 56888899999999987
No 179
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.03 E-value=1.6e+02 Score=31.86 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=35.3
Q ss_pred HHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEEEEe
Q 004263 594 LEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVITIE 671 (765)
Q Consensus 594 L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~isiE 671 (765)
..++|+++||+|- .++++ ++.+++..+.. .+ ++.+-.. |+.+ +.++.+.++++|+|++=
T Consensus 212 A~~~GaD~I~LDn-----------~~~e~-l~~av~~~~~~----~~--~i~leAs-GGIt~~ni~~ya~tGvD~Isvg 271 (288)
T PRK07428 212 ALEYGADIIMLDN-----------MPVDL-MQQAVQLIRQQ----NP--RVKIEAS-GNITLETIRAVAETGVDYISSS 271 (288)
T ss_pred HHHcCCCEEEECC-----------CCHHH-HHHHHHHHHhc----CC--CeEEEEE-CCCCHHHHHHHHHcCCCEEEEc
Confidence 4468999999992 23333 33334333221 11 2333333 5554 56788889999999986
No 180
>PRK08508 biotin synthase; Provisional
Probab=34.65 E-value=6e+02 Score=27.16 Aligned_cols=132 Identities=17% Similarity=0.136 Sum_probs=78.7
Q ss_pred HHHHHcCCCeEEe--eccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEecc
Q 004263 193 AELKAAGATWIQF--DEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR 270 (765)
Q Consensus 193 ~~L~~~G~~~VQi--DEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~ 270 (765)
++..+.|+.-+-+ ..+. .++.+.+.+.+.++.+.+. .+++.++.+.|....+.+..|.+.. +|.+++++..
T Consensus 50 ~~a~~~g~~~~~lv~sg~~----~~~~~~e~~~ei~~~ik~~--~p~l~i~~s~G~~~~e~l~~Lk~aG-ld~~~~~lEt 122 (279)
T PRK08508 50 KMAKANGALGFCLVTSGRG----LDDKKLEYVAEAAKAVKKE--VPGLHLIACNGTASVEQLKELKKAG-IFSYNHNLET 122 (279)
T ss_pred HHHHHCCCCEEEEEeccCC----CCcccHHHHHHHHHHHHhh--CCCcEEEecCCCCCHHHHHHHHHcC-CCEEcccccc
Confidence 3344568865433 2221 1233567777777777543 2466676667765467788888888 9999987653
Q ss_pred C---------CCChhhHhhh---C-CCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCccccc
Q 004263 271 G---------TKTLDLIKTE---F-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAV 335 (765)
Q Consensus 271 ~---------~~~l~~l~~~---~-p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h~P~ 335 (765)
+ ..+++...+. . ..+-.+..|+|=|- -|+.+++++.+..+.+ ++++.+-++.....-.+|.
T Consensus 123 ~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl---GEt~ed~~~~l~~lr~-L~~~svpl~~~~p~~~t~~ 196 (279)
T PRK08508 123 SKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGL---GESWEDRISFLKSLAS-LSPHSTPINFFIPNPALPL 196 (279)
T ss_pred hHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEec---CCCHHHHHHHHHHHHc-CCCCEEeeCCcCCCCCCCC
Confidence 2 1233331110 0 12345666777664 4778888888877755 6666677777555555554
No 181
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=34.60 E-value=5.1e+02 Score=26.80 Aligned_cols=126 Identities=9% Similarity=0.089 Sum_probs=61.9
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec-
Q 004263 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI- 269 (765)
Q Consensus 191 ~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~- 269 (765)
+++.|.++|+++|-+-+-.-.........+.+.+..+.+ ...+++..-..+. ++ +..+.+.. ++++-+--.
T Consensus 32 ~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~-----~~pv~~~GGI~s~-~d-~~~~l~~G-~~~v~ig~~~ 103 (243)
T cd04731 32 LAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEV-----FIPLTVGGGIRSL-ED-ARRLLRAG-ADKVSINSAA 103 (243)
T ss_pred HHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhC-----CCCEEEeCCCCCH-HH-HHHHHHcC-CceEEECchh
Confidence 445566789997776654322111222334444433322 2456666222233 33 34455567 777654432
Q ss_pred -cCCCChhhHhhhCCCCCEEEEEE-----------eeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 004263 270 -RGTKTLDLIKTEFPLGKYLFAGV-----------VDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 270 -~~~~~l~~l~~~~p~~k~l~lGv-----------Vdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vsp 326 (765)
.+++-+..+.+.+++++ +.+++ |-.|.-+.++..+..+.++.+.+ .|.+.+.++.
T Consensus 104 ~~~p~~~~~i~~~~~~~~-i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~-~G~d~i~v~~ 170 (243)
T cd04731 104 VENPELIREIAKRFGSQC-VVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEE-LGAGEILLTS 170 (243)
T ss_pred hhChHHHHHHHHHcCCCC-EEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHH-CCCCEEEEec
Confidence 23344444444565554 33333 22333344445555566666643 5777888865
No 182
>PRK12928 lipoyl synthase; Provisional
Probab=34.12 E-value=6.3e+02 Score=27.30 Aligned_cols=140 Identities=19% Similarity=0.244 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEe-ccCC-CchhhHHHHhcCCCccEEEE-
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIET-YFAD-VPAETYKILTSLKGVTGFGF- 266 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~t-yfg~-~~~~~~~~l~~l~~vd~l~l- 266 (765)
++++++.+.|++.|-|---. ..|+++...+.+.+..+.+.+..+...|.+-+ .|.. . .+.+..+.+.. .+.+..
T Consensus 94 ~~a~~~~~~G~keivitg~~-~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~-~e~L~~l~~Ag-~~i~~hn 170 (290)
T PRK12928 94 RVAEAVAALGLRYVVLTSVA-RDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQ-RERLATVLAAK-PDVFNHN 170 (290)
T ss_pred HHHHHHHHCCCCEEEEEEEe-CCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCC-HHHHHHHHHcC-chhhccc
Confidence 44455667799987772211 11222222344555555554432223443322 2322 4 45677776654 444443
Q ss_pred -Eec-------cCCCChhh----Hhh--hCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCC--CC
Q 004263 267 -DLI-------RGTKTLDL----IKT--EFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSC--SL 330 (765)
Q Consensus 267 -D~~-------~~~~~l~~----l~~--~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC--~L 330 (765)
+-+ +...+.+. +.. ...++-.+..|+|=|. -|+.+++.+.++.+.+ ++.+.+-|.+=+ |.
T Consensus 171 lEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~---GET~ed~~etl~~Lre-l~~d~v~i~~Yl~p~~ 246 (290)
T PRK12928 171 LETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL---GETEDEVIETLRDLRA-VGCDRLTIGQYLRPSL 246 (290)
T ss_pred CcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC---CCCHHHHHHHHHHHHh-cCCCEEEEEcCCCCCc
Confidence 221 11122222 221 1223456777888885 5888999998988866 677888887643 47
Q ss_pred cccccc
Q 004263 331 LHTAVD 336 (765)
Q Consensus 331 ~h~P~~ 336 (765)
.|+|+.
T Consensus 247 ~~~~v~ 252 (290)
T PRK12928 247 AHLPVQ 252 (290)
T ss_pred cCCcee
Confidence 999986
No 183
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=33.65 E-value=3.2e+02 Score=32.93 Aligned_cols=136 Identities=16% Similarity=0.216 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccC---------CCchhhH
Q 004263 182 DKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFA---------DVPAETY 252 (765)
Q Consensus 182 ~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg---------~~~~~~~ 252 (765)
+++...|.+.++.|.++||+.|=+.- -.+-++..++.++.+... + ..++++-.+. ++ .+++
T Consensus 121 ~~~~~~~~~~~~~l~~~gvD~l~~ET-----~~~~~Ea~a~~~a~~~~~---~-~p~~~Sf~~~~~g~l~~G~~~-~~~~ 190 (612)
T PRK08645 121 EEIRREFREQIDALLEEGVDGLLLET-----FYDLEELLLALEAAREKT---D-LPIIAQVAFHEDGVTQNGTSL-EEAL 190 (612)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEc-----cCCHHHHHHHHHHHHHhC---C-CcEEEEEEECCCCeeCCCCCH-HHHH
Confidence 67888999999999999999876652 122234444444443331 1 3455543331 23 5667
Q ss_pred HHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEE---------eeCCCCCcCCHHHHHHHHHHHhhhcCCCcEE
Q 004263 253 KILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGV---------VDGRNIWANDLASSLTTLQDLAGTVGKDKVV 323 (765)
Q Consensus 253 ~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGv---------Vdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~ 323 (765)
..+.+.+ ++++++..++++..+..+.+.+.....+.+|| .+++..|..+++...+.+.+..+. | ==+
T Consensus 191 ~~~~~~~-~~avGiNC~~~p~~~~~~l~~l~~~~~~pl~vypNaG~~~~~~~~~~~~~~p~~~~~~~~~~~~~-G--a~i 266 (612)
T PRK08645 191 KELVAAG-ADVVGLNCGLGPYHMLEALERIPIPENAPLSAYPNAGLPEYVDGRYVYSANPEYFAEYALEFVEQ-G--VRL 266 (612)
T ss_pred HHHHhCC-CCEEEecCCCCHHHHHHHHHHHHhccCceEEEEECCCCCCCCCCccccCCCHHHHHHHHHHHHHh-C--CCE
Confidence 7777888 99999999876555554443232111123332 234445666777766666666542 4 233
Q ss_pred EeCCCCCc
Q 004263 324 VSTSCSLL 331 (765)
Q Consensus 324 vspsC~L~ 331 (765)
|.-=||--
T Consensus 267 iGGCCgt~ 274 (612)
T PRK08645 267 IGGCCGTT 274 (612)
T ss_pred EeEecCCC
Confidence 55666653
No 184
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=33.31 E-value=1.3e+02 Score=30.50 Aligned_cols=95 Identities=15% Similarity=0.090 Sum_probs=45.2
Q ss_pred HHHHHHHcCCCeEEeecccccc-CCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 191 VVAELKAAGATWIQFDEPTLVL-DLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 191 ~l~~L~~~G~~~VQiDEP~L~~-d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
.++...++|+++||+=.--... .++.+....+.+. +......+.+++. .++ +.+.+....++ +|++||--.
T Consensus 11 d~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~---~~~~~~~V~v~vn---~~~-~~i~~ia~~~~-~d~Vqlhg~ 82 (203)
T cd00405 11 DALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAA---LPPFVKRVGVFVN---EDL-EEILEIAEELG-LDVVQLHGD 82 (203)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHh---CCCCCcEEEEEeC---CCH-HHHHHHHHhcC-CCEEEECCC
Confidence 4556678899999997521111 1212222222221 2110111122221 334 55566777889 999999644
Q ss_pred cCCCChhhHhhhCCCCCEEEEEEe
Q 004263 270 RGTKTLDLIKTEFPLGKYLFAGVV 293 (765)
Q Consensus 270 ~~~~~l~~l~~~~p~~k~l~lGvV 293 (765)
........+++.++.+...++|+-
T Consensus 83 e~~~~~~~l~~~~~~~~i~~i~~~ 106 (203)
T cd00405 83 ESPEYCAQLRARLGLPVIKAIRVK 106 (203)
T ss_pred CCHHHHHHHHhhcCCcEEEEEecC
Confidence 322233334332333334446664
No 185
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.14 E-value=1.1e+02 Score=33.18 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=36.1
Q ss_pred HHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEEEEe
Q 004263 594 LEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVITIE 671 (765)
Q Consensus 594 L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~isiE 671 (765)
..++|+++||+|-... + .++++++.. +.. ..+-.. |+.+ +.+..+.++++|+||+=
T Consensus 210 a~~~gaDiI~LDn~s~-----------e-~l~~av~~~-------~~~--~~leaS-GGI~~~ni~~yA~tGVD~Is~G 266 (281)
T PRK06106 210 ALELGVDAVLLDNMTP-----------D-TLREAVAIV-------AGR--AITEAS-GRITPETAPAIAASGVDLISVG 266 (281)
T ss_pred HHHcCCCEEEeCCCCH-----------H-HHHHHHHHh-------CCC--ceEEEE-CCCCHHHHHHHHhcCCCEEEeC
Confidence 3478999999996543 2 233444432 111 223333 7665 67888899999999987
No 186
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=32.81 E-value=6.3e+02 Score=26.87 Aligned_cols=148 Identities=12% Similarity=0.150 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcC--
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDM-- 663 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l-- 663 (765)
.+.+...++.++|+++|=|---. ...+-.+.+.++++.++..+ +..|.+-+... ++++.-++.
T Consensus 26 ~i~~~A~~~~~~GAdiIDVg~~~-------~~~eE~~r~~~~v~~l~~~~-----~~plsIDT~~~---~v~eaaL~~~~ 90 (261)
T PRK07535 26 FIQKLALKQAEAGADYLDVNAGT-------AVEEEPETMEWLVETVQEVV-----DVPLCIDSPNP---AAIEAGLKVAK 90 (261)
T ss_pred HHHHHHHHHHHCCCCEEEECCCC-------CchhHHHHHHHHHHHHHHhC-----CCCEEEeCCCH---HHHHHHHHhCC
Confidence 45566677889999998776321 11111223555666555332 24566766533 456666555
Q ss_pred CccEEE-EecCCC-ChhhHHHhhhcccCCceeccccccCCCCCCC-CH----HHHHHHHHHHHhhcC--CCcEEEcCCCC
Q 004263 664 DADVIT-IENSRS-DEKLLSVFREGVKYRAGIGPGVYDIHSPRIP-ST----EEIADRINKMLAVLE--SNILWVNPDCG 734 (765)
Q Consensus 664 ~~D~is-iE~~r~-~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve-~~----eev~~~i~~a~~~i~--~~~l~vsPdCG 734 (765)
+++.|. +-.... ..+.+...++ |+-.+++=..|.+ -.| +. +.+.++++.+. ..| .+++++-|..|
T Consensus 91 G~~iINsIs~~~~~~~~~~~l~~~---~g~~vv~m~~~~~--g~P~t~~~~~~~l~~~v~~a~-~~GI~~~~IilDPgi~ 164 (261)
T PRK07535 91 GPPLINSVSAEGEKLEVVLPLVKK---YNAPVVALTMDDT--GIPKDAEDRLAVAKELVEKAD-EYGIPPEDIYIDPLVL 164 (261)
T ss_pred CCCEEEeCCCCCccCHHHHHHHHH---hCCCEEEEecCCC--CCCCCHHHHHHHHHHHHHHHH-HcCCCHhHEEEeCCCC
Confidence 777552 221111 2233444444 2222222112211 122 33 33344444444 344 47999999999
Q ss_pred CCCCChhhHHHHHHHHHHHH
Q 004263 735 LKTRKYSEVKPALSNMVAAA 754 (765)
Q Consensus 735 L~~~~~~~~~~kL~~mv~aa 754 (765)
.-..+.+.....|+++....
T Consensus 165 ~~~~~~~~~~~~l~~i~~l~ 184 (261)
T PRK07535 165 PLSAAQDAGPEVLETIRRIK 184 (261)
T ss_pred cccCChHHHHHHHHHHHHHH
Confidence 54445555555566554433
No 187
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=32.68 E-value=1.4e+02 Score=32.60 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
+++.+..++|++.||+|-. +.+++ +++...+.. ++.+..+ |++..+++..+.++. ||.|.+=..
T Consensus 219 eea~ea~~~gaDiI~LDn~------s~e~~---~~av~~~~~---~~~ieaS---GGI~~~ni~~yA~tG-VD~Is~gal 282 (296)
T PRK09016 219 DELDQALKAGADIIMLDNF------TTEQM---REAVKRTNG---RALLEVS---GNVTLETLREFAETG-VDFISVGAL 282 (296)
T ss_pred HHHHHHHHcCCCEEEeCCC------ChHHH---HHHHHhhcC---CeEEEEE---CCCCHHHHHHHHhcC-CCEEEeCcc
Confidence 3456667889999999964 22333 333333321 2334444 778558889999999 999887654
No 188
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=32.67 E-value=6.6e+02 Score=27.06 Aligned_cols=80 Identities=18% Similarity=0.112 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCcE-EEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCc
Q 004263 587 IKDEVEDLEKAGITV-IQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 665 (765)
Q Consensus 587 l~~ev~~L~~aG~~~-IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~ 665 (765)
++..++.-++.+..+ ||+.+-.+... + .. +......+.+.+..+. +.|.+|.|-|..-+.+....+.++
T Consensus 29 ~~avi~aAe~~~~PvIl~~~~~~~~~~-~----~~----~~~~~~~~~~a~~~~~-vpv~lhlDH~~~~e~i~~ai~~Gf 98 (282)
T TIGR01859 29 TQAILEAAEEENSPVIIQVSEGAIKYM-G----GY----KMAVAMVKTLIERMSI-VPVALHLDHGSSYESCIKAIKAGF 98 (282)
T ss_pred HHHHHHHHHHhCCCEEEEcCcchhhcc-C----cH----HHHHHHHHHHHHHCCC-CeEEEECCCCCCHHHHHHHHHcCC
Confidence 444555566777775 88877655321 1 01 1233334444443321 579999998854456667778899
Q ss_pred cEEEEecCCCC
Q 004263 666 DVITIENSRSD 676 (765)
Q Consensus 666 D~isiE~~r~~ 676 (765)
+.+-+|.+..+
T Consensus 99 ~sVmid~s~l~ 109 (282)
T TIGR01859 99 SSVMIDGSHLP 109 (282)
T ss_pred CEEEECCCCCC
Confidence 99999966544
No 189
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=32.67 E-value=1.6e+02 Score=31.78 Aligned_cols=63 Identities=11% Similarity=0.138 Sum_probs=38.7
Q ss_pred HHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEE
Q 004263 590 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVI 668 (765)
Q Consensus 590 ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~i 668 (765)
++++..++|+++||+|. .++++ +..+++..+ ... .++.+-.. |+.+ +.+..+.++++|+|
T Consensus 200 ea~ea~~~GaDiI~lDn-----------~~~e~-l~~~v~~l~----~~~--~~~~leas-GGI~~~ni~~ya~~GvD~i 260 (277)
T TIGR01334 200 QALTVLQASPDILQLDK-----------FTPQQ-LHHLHERLK----FFD--HIPTLAAA-GGINPENIADYIEAGIDLF 260 (277)
T ss_pred HHHHHHHcCcCEEEECC-----------CCHHH-HHHHHHHHh----ccC--CCEEEEEE-CCCCHHHHHHHHhcCCCEE
Confidence 34445678999999992 23333 333343332 112 23445555 6654 56788899999999
Q ss_pred EEe
Q 004263 669 TIE 671 (765)
Q Consensus 669 siE 671 (765)
+.=
T Consensus 261 s~g 263 (277)
T TIGR01334 261 ITS 263 (277)
T ss_pred EeC
Confidence 886
No 190
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=32.45 E-value=2.7e+02 Score=28.12 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCcEEEecc
Q 004263 586 AIKDEVEDLEKAGITVIQIDE 606 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDE 606 (765)
.+.+.++.+.++|+++||+|.
T Consensus 17 ~~~~~~~~~~~~G~~~i~l~~ 37 (220)
T PRK05581 17 RLGEEVKAVEAAGADWIHVDV 37 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEeC
Confidence 355677888999999999985
No 191
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=32.29 E-value=2.1e+02 Score=29.55 Aligned_cols=124 Identities=14% Similarity=0.126 Sum_probs=64.6
Q ss_pred HHHHHHHcCCCeE--EeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCC------CchhhHH----HHhcC
Q 004263 191 VVAELKAAGATWI--QFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFAD------VPAETYK----ILTSL 258 (765)
Q Consensus 191 ~l~~L~~~G~~~V--QiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~------~~~~~~~----~l~~l 258 (765)
.+++..++|+..| |+..-.+. ..+-.+.+.+..+.. ... .+++++-.|..+ ...+.+. ...++
T Consensus 81 ~v~~a~~~Ga~~v~~~~~~~~~~---~~~~~~~i~~v~~~~-~~~-g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~ 155 (235)
T cd00958 81 SVEDAVRLGADAVGVTVYVGSEE---EREMLEELARVAAEA-HKY-GLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAEL 155 (235)
T ss_pred CHHHHHHCCCCEEEEEEecCCch---HHHHHHHHHHHHHHH-HHc-CCCEEEEEeccCCcccCccCHHHHHHHHHHHHHH
Confidence 4566778999987 88764221 111222333332222 211 356777665411 1012222 24567
Q ss_pred CCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCC
Q 004263 259 KGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTS 327 (765)
Q Consensus 259 ~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vsps 327 (765)
. .|.+.+.+..+.+.++.+.+..+-. .+ +-| .+-..|.++.++.++.+.+ .|.+.+.++++
T Consensus 156 G-aD~Ik~~~~~~~~~~~~i~~~~~~p-vv----~~G-G~~~~~~~~~l~~~~~~~~-~Ga~gv~vg~~ 216 (235)
T cd00958 156 G-ADIVKTKYTGDAESFKEVVEGCPVP-VV----IAG-GPKKDSEEEFLKMVYDAME-AGAAGVAVGRN 216 (235)
T ss_pred C-CCEEEecCCCCHHHHHHHHhcCCCC-EE----EeC-CCCCCCHHHHHHHHHHHHH-cCCcEEEechh
Confidence 7 8888886543323334343323211 22 223 3344578888888888876 67777766654
No 192
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=32.02 E-value=93 Score=33.65 Aligned_cols=60 Identities=10% Similarity=0.103 Sum_probs=36.7
Q ss_pred HHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEEEEe
Q 004263 593 DLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVITIE 671 (765)
Q Consensus 593 ~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~isiE 671 (765)
+..++|+++||+|-- ++++ ++.+++..+. .. .++.+-.. |+.+ +.+..+..+++|+|+.=
T Consensus 204 ea~~agaDiI~LDn~-----------~~e~-l~~av~~~~~----~~--~~~~leaS-GGI~~~ni~~yA~tGvD~Is~g 264 (284)
T PRK06096 204 AALRAQPDVLQLDKF-----------SPQQ-ATEIAQIAPS----LA--PHCTLSLA-GGINLNTLKNYADCGIRLFITS 264 (284)
T ss_pred HHHHcCCCEEEECCC-----------CHHH-HHHHHHHhhc----cC--CCeEEEEE-CCCCHHHHHHHHhcCCCEEEEC
Confidence 345789999999842 2332 3334433221 11 23445544 6655 56788899999999886
No 193
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=31.99 E-value=7.6e+02 Score=27.55 Aligned_cols=138 Identities=10% Similarity=0.070 Sum_probs=83.1
Q ss_pred HHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEE
Q 004263 589 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 668 (765)
Q Consensus 589 ~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~i 668 (765)
+.+..|.++|++.|.+=-|+..+ .+ .+.++.+.+... .+.+..++. .+.. -++...++++|.+
T Consensus 26 ~ia~~L~~~Gv~~IEvG~p~~~~---------~~-----~e~i~~i~~~~~-~~~v~~~~r-~~~~-di~~a~~~g~~~i 88 (363)
T TIGR02090 26 EIARKLDELGVDVIEAGFPIASE---------GE-----FEAIKKISQEGL-NAEICSLAR-ALKK-DIDKAIDCGVDSI 88 (363)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCh---------HH-----HHHHHHHHhcCC-CcEEEEEcc-cCHH-HHHHHHHcCcCEE
Confidence 34456788999999985444321 11 234444443322 456665543 5443 4778888999999
Q ss_pred EEecCCCCh-----------hhHH-------HhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEc
Q 004263 669 TIENSRSDE-----------KLLS-------VFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVN 730 (765)
Q Consensus 669 siE~~r~~~-----------~~L~-------~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vs 730 (765)
.+=.+-|+. +.++ ..++ .+..+..++.|+. .-+++.+.+.++.+.+ .+++++.+.
T Consensus 89 ~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~---~G~~v~~~~eda~---r~~~~~l~~~~~~~~~-~g~~~i~l~ 161 (363)
T TIGR02090 89 HTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKE---HGLIVEFSAEDAT---RTDIDFLIKVFKRAEE-AGADRINIA 161 (363)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---cCCEEEEEEeecC---CCCHHHHHHHHHHHHh-CCCCEEEEe
Confidence 885332211 1122 2222 2456777777663 3478888888888765 688999888
Q ss_pred CCCCCCCCChhhHHHHHHHHHH
Q 004263 731 PDCGLKTRKYSEVKPALSNMVA 752 (765)
Q Consensus 731 PdCGL~~~~~~~~~~kL~~mv~ 752 (765)
-.-|.. +|.++..-++.+.+
T Consensus 162 DT~G~~--~P~~v~~li~~l~~ 181 (363)
T TIGR02090 162 DTVGVL--TPQKMEELIKKLKE 181 (363)
T ss_pred CCCCcc--CHHHHHHHHHHHhc
Confidence 877755 45555555555443
No 194
>PRK06256 biotin synthase; Validated
Probab=31.98 E-value=7e+02 Score=27.18 Aligned_cols=125 Identities=12% Similarity=0.079 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCCh-hHHHHHHHcCCc
Q 004263 587 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNF-NDIIHSIMDMDA 665 (765)
Q Consensus 587 l~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~-~~i~~~l~~l~~ 665 (765)
+.++++.+.+.|+.-+.+-- .+.+. +. ..+++..+.++.+.+.. .+.++++-|-. .+.+..|.++++
T Consensus 96 I~~~~~~~~~~g~~~~~l~~----~g~~p---~~-~~~~~~~e~i~~i~~~~----~i~~~~~~g~l~~e~l~~LkeaG~ 163 (336)
T PRK06256 96 LIEAAKEAIEEGAGTFCIVA----SGRGP---SG-KEVDQVVEAVKAIKEET----DLEICACLGLLTEEQAERLKEAGV 163 (336)
T ss_pred HHHHHHHHHHCCCCEEEEEe----cCCCC---Cc-hHHHHHHHHHHHHHhcC----CCcEEecCCcCCHHHHHHHHHhCC
Confidence 33445556678886443321 11100 10 12345555565554432 23444444533 367888899999
Q ss_pred cEEEE--ecCCC---------Ch----hhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEc
Q 004263 666 DVITI--ENSRS---------DE----KLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVN 730 (765)
Q Consensus 666 D~isi--E~~r~---------~~----~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vs 730 (765)
+.+++ |++.. .. +.++.+.+ .+-.++.|++=+. -++.+++.+.+..+ +.++++.+.++
T Consensus 164 ~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~---~Gi~v~~~~I~Gl---gEt~ed~~~~~~~l-~~l~~~~v~i~ 236 (336)
T PRK06256 164 DRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKA---AGIEPCSGGIIGM---GESLEDRVEHAFFL-KELDADSIPIN 236 (336)
T ss_pred CEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHH---cCCeeccCeEEeC---CCCHHHHHHHHHHH-HhCCCCEEeec
Confidence 98865 44210 11 22333333 2445777766664 37888888888765 46777766554
No 195
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=31.88 E-value=3.8e+02 Score=27.35 Aligned_cols=143 Identities=15% Similarity=0.161 Sum_probs=70.4
Q ss_pred HHHHHHHHHHcCCCeEEeec--cccccC--CChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccE
Q 004263 188 YKEVVAELKAAGATWIQFDE--PTLVLD--LDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTG 263 (765)
Q Consensus 188 y~~~l~~L~~~G~~~VQiDE--P~L~~d--~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~ 263 (765)
+.+++++|.++|++|+.+|= -.++.. +..+.++.+++. ....+-+|-...+. ...++.+.+.. ++.
T Consensus 14 l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~--------~~~~~DvHLMv~~P-~~~i~~~~~~g-~~~ 83 (201)
T PF00834_consen 14 LEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKI--------TDLPLDVHLMVENP-ERYIEEFAEAG-ADY 83 (201)
T ss_dssp HHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTT--------SSSEEEEEEESSSG-GGHHHHHHHHT--SE
T ss_pred HHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhc--------CCCcEEEEeeeccH-HHHHHHHHhcC-CCE
Confidence 56788999999999999992 112211 123334433222 12233333333444 56788888887 777
Q ss_pred EEEEeccCCCChhhHhhhCC-CCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCc-EEEeCCCCCccccccccccc
Q 004263 264 FGFDLIRGTKTLDLIKTEFP-LGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDK-VVVSTSCSLLHTAVDLENET 341 (765)
Q Consensus 264 l~lD~~~~~~~l~~l~~~~p-~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~-l~vspsC~L~h~P~~~~~E~ 341 (765)
+.+=+.... ++..+.+.+. .+...++.+ |+. +.++ .+++.+..+ +. ++.+-+=|+.-=+
T Consensus 84 i~~H~E~~~-~~~~~i~~ik~~g~k~Gial----nP~-T~~~----~~~~~l~~v--D~VlvMsV~PG~~Gq~------- 144 (201)
T PF00834_consen 84 ITFHAEATE-DPKETIKYIKEAGIKAGIAL----NPE-TPVE----ELEPYLDQV--DMVLVMSVEPGFGGQK------- 144 (201)
T ss_dssp EEEEGGGTT-THHHHHHHHHHTTSEEEEEE-----TT-S-GG----GGTTTGCCS--SEEEEESS-TTTSSB--------
T ss_pred EEEcccchh-CHHHHHHHHHHhCCCEEEEE----ECC-CCch----HHHHHhhhc--CEEEEEEecCCCCccc-------
Confidence 766655432 2222222121 344555554 221 2222 233444433 44 3334333443222
Q ss_pred CCcHHHHhHHHHHHHHHHHHHHHHHH
Q 004263 342 KLDQEIKSWLAFAAQKVVEVNALAKA 367 (765)
Q Consensus 342 ~l~~~~~~~lafA~qKl~el~~l~~~ 367 (765)
+.....+|+++++.+...
T Consensus 145 --------f~~~~~~KI~~l~~~~~~ 162 (201)
T PF00834_consen 145 --------FIPEVLEKIRELRKLIPE 162 (201)
T ss_dssp ---------HGGHHHHHHHHHHHHHH
T ss_pred --------ccHHHHHHHHHHHHHHHh
Confidence 223588999999888765
No 196
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=31.63 E-value=3.3e+02 Score=28.00 Aligned_cols=146 Identities=14% Similarity=0.208 Sum_probs=84.5
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccC--CCchhhHHHHhcCCCccEEEEE
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFA--DVPAETYKILTSLKGVTGFGFD 267 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg--~~~~~~~~~l~~l~~vd~l~lD 267 (765)
++++.|.++|++.|.+==|.. .+.+.+.++..-+.+.+ .++...+... ++ ...++.+.... ++.+++=
T Consensus 18 ~i~~~L~~~Gv~~iEvg~~~~----~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~i-~~~~~~~~~~g-~~~i~i~ 87 (237)
T PF00682_consen 18 EIAKALDEAGVDYIEVGFPFA----SEDDFEQVRRLREALPN----ARLQALCRANEEDI-ERAVEAAKEAG-IDIIRIF 87 (237)
T ss_dssp HHHHHHHHHTTSEEEEEHCTS----SHHHHHHHHHHHHHHHS----SEEEEEEESCHHHH-HHHHHHHHHTT-SSEEEEE
T ss_pred HHHHHHHHhCCCEEEEccccc----CHHHHHHhhhhhhhhcc----cccceeeeehHHHH-HHHHHhhHhcc-CCEEEec
Confidence 455667888999999884433 34566666665555543 2332222222 12 33344455678 8888877
Q ss_pred eccCC------------CChhhHhhh--C--CCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 004263 268 LIRGT------------KTLDLIKTE--F--PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (765)
Q Consensus 268 ~~~~~------------~~l~~l~~~--~--p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~ 331 (765)
+.-+. +.++.+.+. + ..+..+.+|+.|. .+.+++.+.+.++.+.+. |++.+++.-+-|..
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~---~~~~~~~~~~~~~~~~~~-g~~~i~l~Dt~G~~ 163 (237)
T PF00682_consen 88 ISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDA---SRTDPEELLELAEALAEA-GADIIYLADTVGIM 163 (237)
T ss_dssp EETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTT---GGSSHHHHHHHHHHHHHH-T-SEEEEEETTS-S
T ss_pred CcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcccc---ccccHHHHHHHHHHHHHc-CCeEEEeeCccCCc
Confidence 64321 013222221 1 1356788888765 466788888888888664 78999999988887
Q ss_pred ccccccccccCCcHHHHhHHHHHHHHHHH
Q 004263 332 HTAVDLENETKLDQEIKSWLAFAAQKVVE 360 (765)
Q Consensus 332 h~P~~~~~E~~l~~~~~~~lafA~qKl~e 360 (765)
.|. ++.+.++..++.+.+
T Consensus 164 -~P~----------~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 164 -TPE----------DVAELVRALREALPD 181 (237)
T ss_dssp --HH----------HHHHHHHHHHHHSTT
T ss_pred -CHH----------HHHHHHHHHHHhccC
Confidence 353 444555555444443
No 197
>KOG3338 consensus Divalent cation tolerance-related protein [Inorganic ion transport and metabolism]
Probab=31.53 E-value=33 Score=32.35 Aligned_cols=89 Identities=25% Similarity=0.345 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCcccCCCCCccchhhhhhccCCCCCCcccceeeccc
Q 004263 36 NVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDT 115 (765)
Q Consensus 36 ~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~rf~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdt 115 (765)
+.++++-+..++.-.+|=..+||.=+ |-|.+- |.| ..-..||-|..-.... --++||+-+.
T Consensus 56 E~a~~~arsiV~~rLAACvNiIpeIt-SIY~Wk-------gkI----------~edsE~ll~iKtrsSl-~~~Lt~fV~~ 116 (153)
T KOG3338|consen 56 EVAKELARSIVEERLAACVNIIPEIT-SIYEWK-------GKI----------VEDSEYLLIIKTRSSL-HWPLTKFVRG 116 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccce-ehhhhh-------ccc----------ccchhHHHHHHHhhhh-hhhHHHHHhc
Confidence 34444555555555556566666443 333221 222 1123466666432222 2378999999
Q ss_pred CceeecceecCCCccccCCccchHHHHHH
Q 004263 116 NYHYIVPELGPDVNFSYASHKAVQEYKEA 144 (765)
Q Consensus 116 NyhY~vPe~~~~~~~~l~~~~~~~e~~~a 144 (765)
|..|-|||+.+ .++...+.++++..+..
T Consensus 117 nHpYeVpEVia-lpi~~gs~~YLeW~~q~ 144 (153)
T KOG3338|consen 117 NHPYEVPEVIA-LPIHLGSRPYLEWMNQC 144 (153)
T ss_pred CCCccchhhee-eccccCCcHHHHHHHHh
Confidence 99999999987 45666666677766543
No 198
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.38 E-value=1.8e+02 Score=31.71 Aligned_cols=64 Identities=13% Similarity=0.139 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
+++.+..++|++.||+|- ++.+++.. +...+.. ++.+-.+ |++.-+++..+.++. ||.|..=..
T Consensus 216 eea~eA~~aGaDiImLDn------mspe~l~~---av~~~~~---~~~lEaS---GGIt~~ni~~yA~tG-VD~IS~gal 279 (294)
T PRK06978 216 AQLETALAHGAQSVLLDN------FTLDMMRE---AVRVTAG---RAVLEVS---GGVNFDTVRAFAETG-VDRISIGAL 279 (294)
T ss_pred HHHHHHHHcCCCEEEECC------CCHHHHHH---HHHhhcC---CeEEEEE---CCCCHHHHHHHHhcC-CCEEEeCcc
Confidence 455666788999999994 44444433 3333321 2233334 777667888889999 998877654
No 199
>PRK15124 2'-5' RNA ligase; Provisional
Probab=31.18 E-value=2.8e+02 Score=27.37 Aligned_cols=95 Identities=19% Similarity=0.292 Sum_probs=53.7
Q ss_pred ccCCChHHHHHHHHHHHHHHcc-----CCCCcEEEEecc-CCCchhhHHHH----hcCCCccEEEEEeccCCCChhhHhh
Q 004263 211 VLDLDSHKLQAFSDAYSELQSS-----LSGLNVLIETYF-ADVPAETYKIL----TSLKGVTGFGFDLIRGTKTLDLIKT 280 (765)
Q Consensus 211 ~~d~~~~~~~~~~~~y~~l~~~-----~~~~~i~l~tyf-g~~~~~~~~~l----~~l~~vd~l~lD~~~~~~~l~~l~~ 280 (765)
+.+++++..+.+.+....+... ++.-++||+-.| |+++.+.++.+ .++. ...+.+.+..- .
T Consensus 10 Al~~p~~~~~~l~~~~~~~~~~~~~rwv~~~nlHiTL~FlG~v~~~~~~~l~~~l~~~~-~~pF~l~l~~~----g---- 80 (176)
T PRK15124 10 AIDLPDEIRQQIIHWRATHFPPEAGRPVAAANLHLTLAFLGEVSAEKQQALSQLAGRIR-QPGFTLTLDDA----G---- 80 (176)
T ss_pred EeCCCHHHHHHHHHHHHHhccccCcccccccccEEEEEecCCCCHHHHHHHHHHHHhcc-cCCeEEEECcc----c----
Confidence 4455555555555555544221 112277887666 87754443333 3444 45566666431 1
Q ss_pred hCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcC
Q 004263 281 EFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVG 318 (765)
Q Consensus 281 ~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~ 318 (765)
.||..++|.+|+-.+ .+.+..+.+.|++++...|
T Consensus 81 ~Fp~prvlwlg~~~~----~~~L~~L~~~l~~~l~~~G 114 (176)
T PRK15124 81 QWPRSRVVWLGMRQP----PRGLLQLANMLRSQAARSG 114 (176)
T ss_pred CcCCCCEEEEEcCCC----CHHHHHHHHHHHHHHHHcC
Confidence 256568999999544 2456777777777766444
No 200
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.08 E-value=1.8e+02 Score=31.41 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=40.8
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
+++.+..++|++.||+|- ++.++++. +...+.+ ...+-.+ |++..+++....++. ||.|..=..
T Consensus 204 ee~~ea~~~gaDiImLDn------~s~e~l~~---av~~~~~---~~~leaS---GgI~~~ni~~yA~tG-VD~Is~gal 267 (281)
T PRK06543 204 DQIEPVLAAGVDTIMLDN------FSLDDLRE---GVELVDG---RAIVEAS---GNVNLNTVGAIASTG-VDVISVGAL 267 (281)
T ss_pred HHHHHHHhcCCCEEEECC------CCHHHHHH---HHHHhCC---CeEEEEE---CCCCHHHHHHHHhcC-CCEEEeCcc
Confidence 445566688999999994 44444433 3333322 2234344 778667888889999 998877543
No 201
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=30.84 E-value=5.4e+02 Score=27.87 Aligned_cols=92 Identities=13% Similarity=0.128 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEeccc--cc-----ccCCCCCC----CCHHHHHHHHHHHHHHHHccCCCCceEEEEe
Q 004263 580 CYQIALAIKDEVEDLEKAGITVIQIDEA--AL-----REGLPLRK----SEQDFYLKWAVHSFRITNCGVQDTTQVHTHM 648 (765)
Q Consensus 580 ~~~la~al~~ev~~L~~aG~~~IQiDEP--aL-----~~~l~l~~----~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~ 648 (765)
++++...+.+-.+.+.++|++-|+|.-- .| +.....|. -+.+.-.+...+.++.+-+.++++..|.+-+
T Consensus 136 i~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vri 215 (327)
T cd02803 136 IEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRL 215 (327)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 5567777777778888999999999852 11 11111111 1122223344455555555555455566554
Q ss_pred ccCC----------hhHHHHHHHcCCccEEEEe
Q 004263 649 CYSN----------FNDIIHSIMDMDADVITIE 671 (765)
Q Consensus 649 C~g~----------~~~i~~~l~~l~~D~isiE 671 (765)
..++ .-.+++.+.+.++|.|++-
T Consensus 216 s~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs 248 (327)
T cd02803 216 SADDFVPGGLTLEEAIEIAKALEEAGVDALHVS 248 (327)
T ss_pred chhccCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 4221 1245677788899999874
No 202
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=30.56 E-value=5.9e+02 Score=28.27 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCcc-cCC
Q 004263 457 KISEDDYVKTIKEEINNVVKLQEELDIDVL-VHG 489 (765)
Q Consensus 457 ~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi-~~G 489 (765)
.+|.+|.++++++....+.+.+ ++|.|-| .|+
T Consensus 133 ~mt~~eI~~ii~~f~~aA~~a~-~aGfDgVeih~ 165 (353)
T cd04735 133 ELTHEEIEDIIDAFGEATRRAI-EAGFDGVEIHG 165 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEcc
Confidence 3789999999999998776655 5899987 454
No 203
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=30.05 E-value=8.3e+02 Score=27.41 Aligned_cols=138 Identities=11% Similarity=0.034 Sum_probs=82.7
Q ss_pred HHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEE
Q 004263 589 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 668 (765)
Q Consensus 589 ~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~i 668 (765)
+.+..|.++|++.|.+--|+.... + .+.++.+.+.. ....+.++ |.... .-++...+++++.+
T Consensus 30 ~ia~~L~~~GV~~IE~G~p~~~~~---------~-----~e~i~~i~~~~-~~~~i~~~-~r~~~-~di~~a~~~g~~~i 92 (378)
T PRK11858 30 AIARMLDEIGVDQIEAGFPAVSED---------E-----KEAIKAIAKLG-LNASILAL-NRAVK-SDIDASIDCGVDAV 92 (378)
T ss_pred HHHHHHHHhCCCEEEEeCCCcChH---------H-----HHHHHHHHhcC-CCeEEEEE-cccCH-HHHHHHHhCCcCEE
Confidence 344567889999999876665321 1 12333333321 23455555 54443 34777788999998
Q ss_pred EEecCCCCh-----------hhHH-------HhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEc
Q 004263 669 TIENSRSDE-----------KLLS-------VFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVN 730 (765)
Q Consensus 669 siE~~r~~~-----------~~L~-------~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vs 730 (765)
.+=.+.|+. +.|+ ..++ .+..+..+.-|+. ..+++.+.+.++.+.+ .|++.+.+.
T Consensus 93 ~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~---~G~~v~~~~ed~~---r~~~~~l~~~~~~~~~-~Ga~~I~l~ 165 (378)
T PRK11858 93 HIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKD---HGLYVSFSAEDAS---RTDLDFLIEFAKAAEE-AGADRVRFC 165 (378)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEEeccCC---CCCHHHHHHHHHHHHh-CCCCEEEEe
Confidence 887444331 1222 2232 2456666665543 3478888888888765 688999888
Q ss_pred CCCCCCCCChhhHHHHHHHHHH
Q 004263 731 PDCGLKTRKYSEVKPALSNMVA 752 (765)
Q Consensus 731 PdCGL~~~~~~~~~~kL~~mv~ 752 (765)
-..|.. +|.++..-++.+.+
T Consensus 166 DT~G~~--~P~~v~~lv~~l~~ 185 (378)
T PRK11858 166 DTVGIL--DPFTMYELVKELVE 185 (378)
T ss_pred ccCCCC--CHHHHHHHHHHHHH
Confidence 888766 56666655555544
No 204
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=29.87 E-value=4.9e+02 Score=28.59 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=44.9
Q ss_pred HHHHHHHcCCccEEEEecCCCChh---hHHHhhhc-ccCCceeccccccCCC-CCCCCHHHHHHHHHHHHhhcCCCcEEE
Q 004263 655 DIIHSIMDMDADVITIENSRSDEK---LLSVFREG-VKYRAGIGPGVYDIHS-PRIPSTEEIADRINKMLAVLESNILWV 729 (765)
Q Consensus 655 ~i~~~l~~l~~D~isiE~~r~~~~---~L~~~~~~-~~~~~~l~~GVvd~~s-~~ve~~eev~~~i~~a~~~i~~~~l~v 729 (765)
..++.+.+.++|.|.||+--+-+| .+..+.+. ...+--|+.=+.|... .--++-++++..+.+- ..-+.|
T Consensus 152 ~qle~~~~~gvD~L~fETip~~~EA~a~l~~l~~~~~~~p~~is~t~~d~g~l~~G~t~e~~~~~~~~~-----~~~~~I 226 (317)
T KOG1579|consen 152 QQLEVFLEAGVDLLAFETIPNVAEAKAALELLQELGPSKPFWISFTIKDEGRLRSGETGEEAAQLLKDG-----INLLGI 226 (317)
T ss_pred HHHHHHHhCCCCEEEEeecCCHHHHHHHHHHHHhcCCCCcEEEEEEecCCCcccCCCcHHHHHHHhccC-----CceEEE
Confidence 567788899999999996443211 22223330 1123356666677322 2244566665522221 135778
Q ss_pred cCCCCCCCCCh
Q 004263 730 NPDCGLKTRKY 740 (765)
Q Consensus 730 sPdCGL~~~~~ 740 (765)
.=+|-+.....
T Consensus 227 GvNC~~~~~~~ 237 (317)
T KOG1579|consen 227 GVNCVSPNFVE 237 (317)
T ss_pred EeccCCchhcc
Confidence 88887765433
No 205
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=29.86 E-value=6.9e+02 Score=26.40 Aligned_cols=98 Identities=14% Similarity=0.076 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCc--cEEEEecCCCChhhHHHhhhcccCCceeccccccCC
Q 004263 624 LKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA--DVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIH 701 (765)
Q Consensus 624 l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~--D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~ 701 (765)
.+.+...++.+.+- +..|++|+- +...++++.|.+.+. .++.-=++ .+.+.++.+-+ . |-.++.|-.-+.
T Consensus 113 ~~vf~~ql~lA~~~---~~Pv~iH~r-~a~~~~~~il~~~~~~~~~i~H~fs-G~~~~a~~~l~-~--G~~iS~~g~it~ 184 (258)
T PRK11449 113 QWLLDEQLKLAKRY---DLPVILHSR-RTHDKLAMHLKRHDLPRTGVVHGFS-GSLQQAERFVQ-L--GYKIGVGGTITY 184 (258)
T ss_pred HHHHHHHHHHHHHh---CCCEEEEec-CccHHHHHHHHhcCCCCCeEEEcCC-CCHHHHHHHHH-C--CCEEEeCccccc
Confidence 34444445444332 356889965 777788888876543 22211132 24566666655 1 333443322110
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 004263 702 SPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKT 737 (765)
Q Consensus 702 s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~ 737 (765)
++ .+.++++++.+|.+++.+-+|+.+.+
T Consensus 185 ----~~----~~~~~~~~~~ipldriL~ETD~P~l~ 212 (258)
T PRK11449 185 ----PR----ASKTRDVIAKLPLASLLLETDAPDMP 212 (258)
T ss_pred ----cC----cHHHHHHHHhCChhhEEEecCCCCCC
Confidence 11 24567788889999999999999854
No 206
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=29.67 E-value=3.4e+02 Score=29.32 Aligned_cols=88 Identities=20% Similarity=0.318 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCC-ChHHHHHHHHHHHHHHccCCCCcEEE----------EeccCCC
Q 004263 179 SLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDL-DSHKLQAFSDAYSELQSSLSGLNVLI----------ETYFADV 247 (765)
Q Consensus 179 ~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~-~~~~~~~~~~~y~~l~~~~~~~~i~l----------~tyfg~~ 247 (765)
+.++.=.+...++++....+|+..|-+.-= ..... .++-++.+.++++.+.+. ..+.+++ .+-||++
T Consensus 80 e~~ekS~~~l~~e~~r~~~lG~~~lv~HpG-~~~~~~~e~~l~~i~~~Ln~~~~~-~~v~i~~e~~agegs~~g~~F~~L 157 (280)
T COG0648 80 EKVEKSIERLIDEIDRCEQLGAKLLVFHPG-SYLGQGKEEGLNRIAEALNELLEE-EGVIILLENTAGEGSGKGTQFGEL 157 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEECCc-cccCCCHHHHHHHHHHHHHHHhhc-cCCeEEEEEeccccCccccchhhH
Confidence 777888889999999999999999888853 33333 334577777777776652 1233333 3557777
Q ss_pred chhhHHHHhcCCCccEEEEEecc
Q 004263 248 PAETYKILTSLKGVTGFGFDLIR 270 (765)
Q Consensus 248 ~~~~~~~l~~l~~vd~l~lD~~~ 270 (765)
.++++.+.+.. =-+.-||+.+
T Consensus 158 -~eii~~~~~~~-~igvCiDtcH 178 (280)
T COG0648 158 -AEIIDLIEEKE-RIGVCIDTCH 178 (280)
T ss_pred -HHHHHhhcccC-ceEEEEEchh
Confidence 77777777766 5677788776
No 207
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=29.66 E-value=1.9e+02 Score=30.89 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD 267 (765)
+++.+..++|+++|++|-... +.++++.+.+.. ...+... |++..++++.+.+.. ||++.+=
T Consensus 189 eea~~A~~~gaDyI~ld~~~~---------e~lk~~v~~~~~---~ipi~As---GGI~~~ni~~~a~~G-vd~Isvg 250 (265)
T TIGR00078 189 EEAEEAAEAGADIIMLDNMKP---------EEIKEAVQLLKG---RVLLEAS---GGITLDNLEEYAETG-VDVISSG 250 (265)
T ss_pred HHHHHHHHcCCCEEEECCCCH---------HHHHHHHHHhcC---CCcEEEE---CCCCHHHHHHHHHcC-CCEEEeC
Confidence 344455688999999986322 223333333322 1334444 778668899999999 9999883
No 208
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=29.31 E-value=2.3e+02 Score=29.16 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=39.5
Q ss_pred HHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEEEE
Q 004263 591 VEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITI 670 (765)
Q Consensus 591 v~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~isi 670 (765)
++.+.+.|+.+||+-++.+.+ +++.+.+...... +... +..+.+| +-++...++++|++++
T Consensus 25 l~~~l~~G~~~vqLR~k~~~~---------~~~~~la~~l~~~-~~~~--~~~liIn-------d~~~lA~~~~adGVHl 85 (211)
T PRK03512 25 IERLLDAGVRTLQLRIKDRRD---------EEVEADVVAAIAL-GRRY--QARLFIN-------DYWRLAIKHQAYGVHL 85 (211)
T ss_pred HHHHHhCCCCEEEEcCCCCCH---------HHHHHHHHHHHHH-HHHh--CCeEEEe-------CHHHHHHHcCCCEEEc
Confidence 667788999999999877642 3444444333322 2222 2456676 2366667789999998
Q ss_pred e
Q 004263 671 E 671 (765)
Q Consensus 671 E 671 (765)
.
T Consensus 86 g 86 (211)
T PRK03512 86 G 86 (211)
T ss_pred C
Confidence 7
No 209
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=29.19 E-value=6.6e+02 Score=26.00 Aligned_cols=149 Identities=11% Similarity=0.110 Sum_probs=85.0
Q ss_pred HHHHHHHHcCCCeEEeeccccccC--CChHHHHHHHHHHHHHHccCCCCcE-EEEeccCCCchhhHHHHhcCCCccEEEE
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLD--LDSHKLQAFSDAYSELQSSLSGLNV-LIETYFADVPAETYKILTSLKGVTGFGF 266 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d--~~~~~~~~~~~~y~~l~~~~~~~~i-~l~tyfg~~~~~~~~~l~~l~~vd~l~l 266 (765)
++++.|.++|+++|.+==|.-..- .-.++.+.++ .+.+..+..++ .+.+. + .+.+..+.+.+ ++.+++
T Consensus 23 ~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~----~l~~~~~~~~~~~l~~~-~---~~~i~~a~~~g-~~~i~i 93 (265)
T cd03174 23 EIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLR----AIRKLVPNVKLQALVRN-R---EKGIERALEAG-VDEVRI 93 (265)
T ss_pred HHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHH----HHHhccCCcEEEEEccC-c---hhhHHHHHhCC-cCEEEE
Confidence 556677889999999876543200 0012223222 23332212333 22222 1 33467777888 888877
Q ss_pred EeccCC------------CChhhHhhh----CCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCC
Q 004263 267 DLIRGT------------KTLDLIKTE----FPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSL 330 (765)
Q Consensus 267 D~~~~~------------~~l~~l~~~----~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L 330 (765)
=+.... +.++.+... -..+..+.+.+.+.-.. ..+++.+.+.++.+.+ .|++.+++..+-|.
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-~~~~~~l~~~~~~~~~-~g~~~i~l~Dt~G~ 171 (265)
T cd03174 94 FDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC-KTDPEYVLEVAKALEE-AGADEISLKDTVGL 171 (265)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC-CCCHHHHHHHHHHHHH-cCCCEEEechhcCC
Confidence 765320 123333221 12456788888654332 4899999999998876 67889999888665
Q ss_pred cccccccccccCCcHHHHhHHHHHHHHHHH
Q 004263 331 LHTAVDLENETKLDQEIKSWLAFAAQKVVE 360 (765)
Q Consensus 331 ~h~P~~~~~E~~l~~~~~~~lafA~qKl~e 360 (765)
. . |.++.+.++..++.+..
T Consensus 172 ~-~----------P~~v~~li~~l~~~~~~ 190 (265)
T cd03174 172 A-T----------PEEVAELVKALREALPD 190 (265)
T ss_pred c-C----------HHHHHHHHHHHHHhCCC
Confidence 3 2 44566666665555543
No 210
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=28.80 E-value=6.5e+02 Score=26.40 Aligned_cols=126 Identities=6% Similarity=0.038 Sum_probs=59.8
Q ss_pred HHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec--
Q 004263 192 VAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI-- 269 (765)
Q Consensus 192 l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~-- 269 (765)
++.+.+.|++++.+=+=.=.........+.+. .+.+.. ...+.+..-..+. .+ +..+..+. ++.+-+--.
T Consensus 36 a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~----~i~~~~-~~pv~~~GGi~s~-~d-~~~~~~~G-a~~vivgt~~~ 107 (254)
T TIGR00735 36 AQRYDEEGADELVFLDITASSEGRTTMIDVVE----RTAETV-FIPLTVGGGIKSI-ED-VDKLLRAG-ADKVSINTAAV 107 (254)
T ss_pred HHHHHHcCCCEEEEEcCCcccccChhhHHHHH----HHHHhc-CCCEEEECCCCCH-HH-HHHHHHcC-CCEEEEChhHh
Confidence 34445789998876553211111111233333 333322 2456666222223 33 44556677 877655432
Q ss_pred cCCCChhhHhhhCCCCC-EEEEEEeeCC-----------CCCcC-CHHHHHHHHHHHhhhcCCCcEEEeC
Q 004263 270 RGTKTLDLIKTEFPLGK-YLFAGVVDGR-----------NIWAN-DLASSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 270 ~~~~~l~~l~~~~p~~k-~l~lGvVdgr-----------n~~~e-d~~~~~~~l~~~~~~~~~~~l~vsp 326 (765)
.+++-+..+.+.|++++ .+++-+-++. +.|.+ ......+.++.+. ..|.+.+.++.
T Consensus 108 ~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~-~~G~~~iivt~ 176 (254)
T TIGR00735 108 KNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVE-KLGAGEILLTS 176 (254)
T ss_pred hChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHH-HcCCCEEEEeC
Confidence 23444444544576555 3455544443 22333 2333444444443 35777888854
No 211
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=28.54 E-value=8.6e+02 Score=27.67 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCcE-EEecccccc-cCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEec
Q 004263 572 NDQPRFETCYQIALAIKDEVEDLEKAGITV-IQIDEAALR-EGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMC 649 (765)
Q Consensus 572 ~~~~~~e~~~~la~al~~ev~~L~~aG~~~-IQiDEPaL~-~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C 649 (765)
.+++.+++-+-+...+.+.+--.+++|++. |-=|+|-.. .++|-- .+ ..+.++++++.++ +...++-.|
T Consensus 201 ~~i~~e~lwenl~yFL~~ViPvAEe~GV~LAiHPDDPP~~i~GlpRI-vs-------t~ed~~rll~~V~-SpanGlt~C 271 (394)
T TIGR00695 201 KDIDEEKLRDNLAFFLQEILPVAEEYGVQMAIHPDDPPRPILGLPRI-VS-------TIEDMQWLVATSD-SPANGFTMC 271 (394)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEECCCCCCccccCCCcc-cC-------CHHHHHHHHHhcC-CccccEEEE
Confidence 356888899999999999999999999996 888998532 133310 11 1344556666665 345678888
Q ss_pred cCChh
Q 004263 650 YSNFN 654 (765)
Q Consensus 650 ~g~~~ 654 (765)
-|++.
T Consensus 272 tGSlg 276 (394)
T TIGR00695 272 TGSYG 276 (394)
T ss_pred ecccc
Confidence 88654
No 212
>PLN02389 biotin synthase
Probab=28.46 E-value=8.9e+02 Score=27.28 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=63.6
Q ss_pred HHHHHHHcCCCeEEeeccccc-cCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 191 VVAELKAAGATWIQFDEPTLV-LDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 191 ~l~~L~~~G~~~VQiDEP~L~-~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
.++++.+.|++.+-|=. .+. ..-.+...+.+.+.+..+.+ . .+. ++...|-...+.+..|.+.. +|.+++.+.
T Consensus 124 ~a~~~~~~G~~~~~ivt-s~rg~~~e~~~~e~i~eiir~ik~-~-~l~--i~~s~G~l~~E~l~~LkeAG-ld~~~~~Le 197 (379)
T PLN02389 124 AAKRAKEAGSTRFCMGA-AWRDTVGRKTNFNQILEYVKEIRG-M-GME--VCCTLGMLEKEQAAQLKEAG-LTAYNHNLD 197 (379)
T ss_pred HHHHHHHcCCCEEEEEe-cccCCCCChhHHHHHHHHHHHHhc-C-CcE--EEECCCCCCHHHHHHHHHcC-CCEEEeeec
Confidence 44556678998664310 000 11111245666666666643 1 234 34455655467788899999 999999887
Q ss_pred cC---------CCChhhHhhh----CCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHh
Q 004263 270 RG---------TKTLDLIKTE----FPLGKYLFAGVVDGRNIWANDLASSLTTLQDLA 314 (765)
Q Consensus 270 ~~---------~~~l~~l~~~----~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~ 314 (765)
.. ..+++...+. -..+-.+..|+|=|.. |+.++.++.+..+.
T Consensus 198 Ts~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlg---Et~edrv~~l~~Lr 252 (379)
T PLN02389 198 TSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLG---EAEEDRVGLLHTLA 252 (379)
T ss_pred CChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCC---CCHHHHHHHHHHHH
Confidence 31 2334322210 1234568889998985 45555555554443
No 213
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.06 E-value=1.8e+02 Score=31.30 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=40.1
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 191 ~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
++.+..++|+++||+|- ++.++ ++++.+.+. ++..+... |++..++++.+.+.. ||+|.+=..
T Consensus 201 ea~eA~~~gaD~I~LD~------~~~e~---l~~~v~~~~---~~i~leAs---GGIt~~ni~~~a~tG-vD~Isvg~l 263 (277)
T PRK05742 201 ELRQALAAGADIVMLDE------LSLDD---MREAVRLTA---GRAKLEAS---GGINESTLRVIAETG-VDYISIGAM 263 (277)
T ss_pred HHHHHHHcCCCEEEECC------CCHHH---HHHHHHHhC---CCCcEEEE---CCCCHHHHHHHHHcC-CCEEEEChh
Confidence 44556688999999973 23333 333333231 12345555 778568899999999 999887654
No 214
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=27.87 E-value=5.9e+02 Score=27.79 Aligned_cols=127 Identities=13% Similarity=0.150 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCCcEEEec---ccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCCh---hHHHHHH
Q 004263 587 IKDEVEDLEKAGITVIQID---EAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNF---NDIIHSI 660 (765)
Q Consensus 587 l~~ev~~L~~aG~~~IQiD---EPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~---~~i~~~l 660 (765)
+.++++.+.+.|++.|.|- -+.+.. .+. +...+.++.+.+..+ + +.+++|.+++ .+.++.+
T Consensus 96 i~~~a~~~~~~GlkevvLTsv~~ddl~d------~g~----~~l~~li~~I~~~~p-~--i~Ievl~~d~~g~~e~l~~l 162 (302)
T TIGR00510 96 PAKLAETIKDMGLKYVVITSVDRDDLED------GGA----SHLAECIEAIREKLP-N--IKIETLVPDFRGNIAALDIL 162 (302)
T ss_pred HHHHHHHHHHCCCCEEEEEeecCCCccc------ccH----HHHHHHHHHHHhcCC-C--CEEEEeCCcccCCHHHHHHH
Confidence 3556667778899864442 222211 111 234444555443333 2 3456665554 4678888
Q ss_pred HcCCccEEEE--ecCC-------C--C----hhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCC
Q 004263 661 MDMDADVITI--ENSR-------S--D----EKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESN 725 (765)
Q Consensus 661 ~~l~~D~isi--E~~r-------~--~----~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~ 725 (765)
.+.+.|++.. |++. . . ++.|+.+++ ..-+-.+.-|++=+. -|+.|++.+.+..+. .++.+
T Consensus 163 ~~aG~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~-~~pgi~~~TgiIVGl---GETeee~~etl~~Lr-elg~d 237 (302)
T TIGR00510 163 LDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKE-YLPNLPTKSGIMVGL---GETNEEIKQTLKDLR-DHGVT 237 (302)
T ss_pred HHcCchhhcccccchHHHHHHhCCCCCHHHHHHHHHHHHH-hCCCCeecceEEEEC---CCCHHHHHHHHHHHH-hcCCC
Confidence 8888887655 4321 1 1 234444443 111223444444443 488899888888774 46777
Q ss_pred cEEEcC
Q 004263 726 ILWVNP 731 (765)
Q Consensus 726 ~l~vsP 731 (765)
.+.|+.
T Consensus 238 ~v~igq 243 (302)
T TIGR00510 238 MVTLGQ 243 (302)
T ss_pred EEEeec
Confidence 776653
No 215
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=27.41 E-value=9.2e+02 Score=27.06 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
++++.|.++|++.|.+==|... +.+.+.++.. .+. .++..+.++ ......-++...+.. ++.+++=+.
T Consensus 30 ~ia~~L~~~GV~~IE~G~p~~~----~~~~e~i~~i----~~~--~~~~~i~~~-~r~~~~di~~a~~~g-~~~i~i~~~ 97 (378)
T PRK11858 30 AIARMLDEIGVDQIEAGFPAVS----EDEKEAIKAI----AKL--GLNASILAL-NRAVKSDIDASIDCG-VDAVHIFIA 97 (378)
T ss_pred HHHHHHHHhCCCEEEEeCCCcC----hHHHHHHHHH----Hhc--CCCeEEEEE-cccCHHHHHHHHhCC-cCEEEEEEc
Confidence 4556788899999999877543 3344444333 221 122233333 322133466677888 898888664
Q ss_pred cCC------------CChhhHhhh--C--CCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCccc
Q 004263 270 RGT------------KTLDLIKTE--F--PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHT 333 (765)
Q Consensus 270 ~~~------------~~l~~l~~~--~--p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h~ 333 (765)
.+. +.++.+.+. + ..+..+.++..|+ .+.|++.+.+.++.+.+ .|++++.+.-..|.+ .
T Consensus 98 ~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~---~r~~~~~l~~~~~~~~~-~Ga~~I~l~DT~G~~-~ 172 (378)
T PRK11858 98 TSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDA---SRTDLDFLIEFAKAAEE-AGADRVRFCDTVGIL-D 172 (378)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccC---CCCCHHHHHHHHHHHHh-CCCCEEEEeccCCCC-C
Confidence 321 112222211 1 1345688887654 46789999999999876 688999999999976 3
Q ss_pred ccc
Q 004263 334 AVD 336 (765)
Q Consensus 334 P~~ 336 (765)
|..
T Consensus 173 P~~ 175 (378)
T PRK11858 173 PFT 175 (378)
T ss_pred HHH
Confidence 543
No 216
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=27.33 E-value=1e+02 Score=33.54 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHH
Q 004263 705 IPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALS 748 (765)
Q Consensus 705 ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~ 748 (765)
+.|+|+|+++|++..+..+.+.+.+.+++|+ +.+++.+.|+
T Consensus 273 vGtpe~v~~~l~~~~~~~G~~~~~~~~~~~~---~~~~~~~~~~ 313 (315)
T cd01096 273 VGTPEECIEIIQLAIEATGIKNILLSFESMG---SEDEIIASIN 313 (315)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEeccCCC---CHHHHHHHHh
Confidence 6899999999988888889999999999765 6677777665
No 217
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=27.07 E-value=7.9e+02 Score=26.19 Aligned_cols=147 Identities=11% Similarity=0.091 Sum_probs=84.9
Q ss_pred HHHHHHHcCCcEEEecccccccC-CCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCC------------hhHH
Q 004263 590 EVEDLEKAGITVIQIDEAALREG-LPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSN------------FNDI 656 (765)
Q Consensus 590 ev~~L~~aG~~~IQiDEPaL~~~-l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~------------~~~i 656 (765)
.+..|.++|+++|.+=-|+.... +-....++.++ ++.+.+..+ ++.+..+ |.+. ....
T Consensus 26 ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~-------i~~~~~~~~-~~~l~~~-~r~~~~~~~~~~p~~~~~~d 96 (275)
T cd07937 26 IAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWER-------LRELRKAMP-NTPLQML-LRGQNLVGYRHYPDDVVELF 96 (275)
T ss_pred HHHHHHHcCCCEEEccCCcchhhhccccCCCHHHH-------HHHHHHhCC-CCceehh-cccccccCccCCCcHHHHHH
Confidence 45678899999999988873111 10112233222 222222222 3455554 3331 2345
Q ss_pred HHHHHcCCccEEEEecCCCChhhHH----HhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCC
Q 004263 657 IHSIMDMDADVITIENSRSDEKLLS----VFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPD 732 (765)
Q Consensus 657 ~~~l~~l~~D~isiE~~r~~~~~L~----~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPd 732 (765)
++...+.++|.|.+-...++++.+. ..++ .+..+..++--..+ -.-+++.+.+.++++.+ .+++++.+.-.
T Consensus 97 i~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~---~G~~v~~~i~~~~~-~~~~~~~~~~~~~~~~~-~Ga~~i~l~DT 171 (275)
T cd07937 97 VEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKK---AGKHVEGAICYTGS-PVHTLEYYVKLAKELED-MGADSICIKDM 171 (275)
T ss_pred HHHHHHcCCCEEEEeecCChHHHHHHHHHHHHH---CCCeEEEEEEecCC-CCCCHHHHHHHHHHHHH-cCCCEEEEcCC
Confidence 6667788999998876555654333 3343 24444443321222 24578888888888865 68999999999
Q ss_pred CCCCCCChhhHHHHHHHHHH
Q 004263 733 CGLKTRKYSEVKPALSNMVA 752 (765)
Q Consensus 733 CGL~~~~~~~~~~kL~~mv~ 752 (765)
.|..+ |.++..-++.+.+
T Consensus 172 ~G~~~--P~~v~~lv~~l~~ 189 (275)
T cd07937 172 AGLLT--PYAAYELVKALKK 189 (275)
T ss_pred CCCCC--HHHHHHHHHHHHH
Confidence 99885 5555555544443
No 218
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=26.91 E-value=6e+02 Score=27.88 Aligned_cols=96 Identities=15% Similarity=0.240 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccc---cccCC----CCC----CCCHHHHHHHHHHHHHHHHccCCCCc
Q 004263 574 QPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAA---LREGL----PLR----KSEQDFYLKWAVHSFRITNCGVQDTT 642 (765)
Q Consensus 574 ~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPa---L~~~l----~l~----~~~~~~~l~~~v~a~~~~~~~v~~~~ 642 (765)
.+.++ ++++...+.+-.+.+.++|++.|+|.--- +...+ ..| +-+...-.+...+.++.+-+.++++.
T Consensus 144 mt~~e-I~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~ 222 (336)
T cd02932 144 LTREE-IAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDK 222 (336)
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 34444 45677777777788888999999998421 11111 111 11222233444555555555565556
Q ss_pred eEEEEecc------C-Chh---HHHHHHHcCCccEEEE
Q 004263 643 QVHTHMCY------S-NFN---DIIHSIMDMDADVITI 670 (765)
Q Consensus 643 ~I~~H~C~------g-~~~---~i~~~l~~l~~D~isi 670 (765)
.|.+-+.. | +.. .+.+.|.+.++|.|++
T Consensus 223 ~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev 260 (336)
T cd02932 223 PLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDV 260 (336)
T ss_pred eEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 66666552 1 122 4555667778888875
No 219
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=26.71 E-value=4.8e+02 Score=29.82 Aligned_cols=95 Identities=13% Similarity=0.231 Sum_probs=57.0
Q ss_pred chHHHHHH-HHcCCCCc-eEeehHHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCC
Q 004263 137 AVQEYKEA-KALGMETV-PVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDL 214 (765)
Q Consensus 137 ~~~e~~~a-~~~g~~~K-~vl~GP~T~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~ 214 (765)
-+++|+.+ ++.|+... .++=+||. .-|+.. + .+..+.=+..+.+.|+.-.+.|+.+|.+.--......
T Consensus 177 ~~~~f~~~~~~~gi~~~~i~~HapYl-INLASp--------d-~e~rekSv~~~~~eL~rA~~LGa~~VV~HPGs~~~~~ 246 (413)
T PTZ00372 177 TIDKFKENCKKYNYDPKFILPHGSYL-INLANP--------D-KEKREKSYDAFLDDLQRCEQLGIKLYNFHPGSTVGQC 246 (413)
T ss_pred HHHHHHHHHHHcCCCcceEEeecCce-ecCCCC--------C-HHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCCCCC
Confidence 45556544 34566544 44568876 344431 2 2444555778889999999999999999965543222
Q ss_pred C-hHHHHHHHHHHHHHHccCCCCcEEEE
Q 004263 215 D-SHKLQAFSDAYSELQSSLSGLNVLIE 241 (765)
Q Consensus 215 ~-~~~~~~~~~~y~~l~~~~~~~~i~l~ 241 (765)
. ++.++.+.+.++.+.+....+.|+|-
T Consensus 247 ~~ee~i~~i~e~L~~~la~~~gV~IlLE 274 (413)
T PTZ00372 247 SKEEGIKNIADCINKAHEETKSVIIVLE 274 (413)
T ss_pred CHHHHHHHHHHHHHHHHhCcCCCEEEEe
Confidence 2 34456666666655443333566664
No 220
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=26.67 E-value=5.7e+02 Score=26.69 Aligned_cols=103 Identities=5% Similarity=0.090 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCcc--EEEEecCCCChhhHHHhhhcccCCceeccc
Q 004263 619 EQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD--VITIENSRSDEKLLSVFREGVKYRAGIGPG 696 (765)
Q Consensus 619 ~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D--~isiE~~r~~~~~L~~~~~~~~~~~~l~~G 696 (765)
+++.-.+.+...++.+.+- +..+.+| |.+-..++++.|.+.+.. .+-+=.-..+.+.++.+.+ .+-.++++
T Consensus 105 ~~~~Q~~vF~~ql~lA~~~---~~pv~iH-~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~~~---~g~~~S~~ 177 (255)
T PF01026_consen 105 DKEVQEEVFERQLELAKEL---NLPVSIH-CRKAHEELLEILKEYGPPNLRVIFHCFSGSPEEAKKFLD---LGCYFSFS 177 (255)
T ss_dssp GHHHHHHHHHHHHHHHHHH---TCEEEEE-EESHHHHHHHHHHHTTGGTSEEEETT--S-HHHHHHHHH---TTEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHHh---CCcEEEe-cCCcHHHHHHHHHhccccceeEEEecCCCCHHHHHHHHh---cCceEEec
Confidence 3444455566666665543 3578899 457778899999887632 2333221224556666654 13334433
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCC
Q 004263 697 VYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLK 736 (765)
Q Consensus 697 Vvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~ 736 (765)
-.-.. .. .+...++++.+|.+++.+-+|+...
T Consensus 178 ~~~~~---~~-----~~~~~~~~~~ip~drillETD~P~~ 209 (255)
T PF01026_consen 178 GAITF---KN-----SKKVRELIKAIPLDRILLETDAPYL 209 (255)
T ss_dssp GGGGS---TT-----SHHHHHHHHHS-GGGEEEE-BTTSS
T ss_pred ccccc---cc-----cHHHHHHHhcCChhhEEEcCCCCcC
Confidence 32211 01 2346777788999999999998653
No 221
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=26.55 E-value=8e+02 Score=26.12 Aligned_cols=136 Identities=10% Similarity=0.078 Sum_probs=75.6
Q ss_pred HHHHHHHcCCCeEEeecccccc----CCChHHHHHHHHHHHHHHccCCCCcEEE-E-----eccCCCc----hhhHHHHh
Q 004263 191 VVAELKAAGATWIQFDEPTLVL----DLDSHKLQAFSDAYSELQSSLSGLNVLI-E-----TYFADVP----AETYKILT 256 (765)
Q Consensus 191 ~l~~L~~~G~~~VQiDEP~L~~----d~~~~~~~~~~~~y~~l~~~~~~~~i~l-~-----tyfg~~~----~~~~~~l~ 256 (765)
++..|.++|+++|.+=-|+-.- -...++.+.++..-+.. ++.++.. . ..|..++ ..-++...
T Consensus 26 ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~----~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~ 101 (275)
T cd07937 26 IAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAM----PNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAA 101 (275)
T ss_pred HHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhC----CCCceehhcccccccCccCCCcHHHHHHHHHHH
Confidence 4667888999999998887310 12233344443332222 1122221 1 0122221 22244556
Q ss_pred cCCCccEEEEEeccCCCChhhHhh---hC-CCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcc
Q 004263 257 SLKGVTGFGFDLIRGTKTLDLIKT---EF-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLH 332 (765)
Q Consensus 257 ~l~~vd~l~lD~~~~~~~l~~l~~---~~-p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h 332 (765)
+.. ++.+++=+--+ +++.+.+ .. ..+..+.+++.-. ..-+.+++.+.+.++++.+ .|++++++.-+.|.+.
T Consensus 102 ~~g-~~~iri~~~~~--~~~~~~~~i~~ak~~G~~v~~~i~~~-~~~~~~~~~~~~~~~~~~~-~Ga~~i~l~DT~G~~~ 176 (275)
T cd07937 102 KNG-IDIFRIFDALN--DVRNLEVAIKAVKKAGKHVEGAICYT-GSPVHTLEYYVKLAKELED-MGADSICIKDMAGLLT 176 (275)
T ss_pred HcC-CCEEEEeecCC--hHHHHHHHHHHHHHCCCeEEEEEEec-CCCCCCHHHHHHHHHHHHH-cCCCEEEEcCCCCCCC
Confidence 777 88888843222 3433332 11 1345555555221 2246789999999999876 5889999999999984
Q ss_pred cccc
Q 004263 333 TAVD 336 (765)
Q Consensus 333 ~P~~ 336 (765)
|..
T Consensus 177 -P~~ 179 (275)
T cd07937 177 -PYA 179 (275)
T ss_pred -HHH
Confidence 543
No 222
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=26.38 E-value=7.5e+02 Score=27.13 Aligned_cols=93 Identities=13% Similarity=0.165 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEecccc-------cccCCCCC----CCCHHHHHHHHHHHHHHHHccCCCCceEEE
Q 004263 578 ETCYQIALAIKDEVEDLEKAGITVIQIDEAA-------LREGLPLR----KSEQDFYLKWAVHSFRITNCGVQDTTQVHT 646 (765)
Q Consensus 578 e~~~~la~al~~ev~~L~~aG~~~IQiDEPa-------L~~~l~l~----~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~ 646 (765)
+-++++...+.+-.+...++|++.|+|.--- |+....-| +-+.+.-.+..++.++.+-+.++++..|.+
T Consensus 142 ~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~v 221 (338)
T cd04733 142 EEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGI 221 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 3356666777777778889999999998543 22111111 112233345556666666666666667777
Q ss_pred Eecc-----CCh-----hHHHHHHHcCCccEEEE
Q 004263 647 HMCY-----SNF-----NDIIHSIMDMDADVITI 670 (765)
Q Consensus 647 H~C~-----g~~-----~~i~~~l~~l~~D~isi 670 (765)
-+.. +.+ -.+++.|.+.++|.|++
T Consensus 222 ris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev 255 (338)
T cd04733 222 KLNSADFQRGGFTEEDALEVVEALEEAGVDLVEL 255 (338)
T ss_pred EEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 6652 111 25566777788888775
No 223
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.28 E-value=2.3e+02 Score=30.68 Aligned_cols=63 Identities=11% Similarity=0.101 Sum_probs=39.9
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 191 ~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
++.+..++|++.||+|-. +.+ .++++...+.. +..+-.+ |++..+++..+.++. ||.|.+=..
T Consensus 206 ea~ea~~~gaDiI~LDn~------s~e---~l~~av~~~~~---~~~leaS---GGI~~~ni~~yA~tG-VD~Is~Gal 268 (281)
T PRK06106 206 QLEEALELGVDAVLLDNM------TPD---TLREAVAIVAG---RAITEAS---GRITPETAPAIAASG-VDLISVGWL 268 (281)
T ss_pred HHHHHHHcCCCEEEeCCC------CHH---HHHHHHHHhCC---CceEEEE---CCCCHHHHHHHHhcC-CCEEEeChh
Confidence 445556889999999954 333 33444443422 1224344 778557888899999 999887543
No 224
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=26.07 E-value=2.3e+02 Score=30.55 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
+++.+-.++|++.|++|- +++++ ++++.+.+ ... .++++-. -|++.-++++...++. ||.|++=.-
T Consensus 199 e~~~eAl~agaDiImLDN------m~~e~---~~~av~~l-~~~--~~~~lEa-SGgIt~~ni~~yA~tG-VD~IS~gal 264 (280)
T COG0157 199 EEAEEALEAGADIIMLDN------MSPEE---LKEAVKLL-GLA--GRALLEA-SGGITLENIREYAETG-VDVISVGAL 264 (280)
T ss_pred HHHHHHHHcCCCEEEecC------CCHHH---HHHHHHHh-ccC--CceEEEE-eCCCCHHHHHHHhhcC-CCEEEeCcc
Confidence 344555688999999995 33333 34444433 111 1344432 2877667888889999 999887654
Q ss_pred c
Q 004263 270 R 270 (765)
Q Consensus 270 ~ 270 (765)
.
T Consensus 265 t 265 (280)
T COG0157 265 T 265 (280)
T ss_pred c
Confidence 3
No 225
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=26.01 E-value=7.2e+02 Score=27.49 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccc-------cccCCCCCC----CCHHHHHHHHHHHHHHHHccCCCCce
Q 004263 575 PRFETCYQIALAIKDEVEDLEKAGITVIQIDEAA-------LREGLPLRK----SEQDFYLKWAVHSFRITNCGVQDTTQ 643 (765)
Q Consensus 575 ~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPa-------L~~~l~l~~----~~~~~~l~~~v~a~~~~~~~v~~~~~ 643 (765)
+.+| ++++...+.+-.+...++|.+.|+|.-.- |+.....|. -+...-.+...+.++.+-+.++++..
T Consensus 128 t~~e-I~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~ 206 (353)
T cd02930 128 SEEE-IEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFI 206 (353)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCce
Confidence 4444 45666777777778888999999996421 111111111 11222234445555555555665666
Q ss_pred EEEEeccCC-----h-----hHHHHHHHcCCccEEEE
Q 004263 644 VHTHMCYSN-----F-----NDIIHSIMDMDADVITI 670 (765)
Q Consensus 644 I~~H~C~g~-----~-----~~i~~~l~~l~~D~isi 670 (765)
|.+-+..-+ + -.+.+.|.++++|.|++
T Consensus 207 v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 207 IIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred EEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 665554321 1 14667777888999988
No 226
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=25.85 E-value=2.4e+02 Score=30.17 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=36.9
Q ss_pred HHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEE
Q 004263 194 ELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF 266 (765)
Q Consensus 194 ~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~l 266 (765)
+..++|+++|++|-. .. +.++++.+.+.+. +.+.+... |++..++++.+.+.. ||++.+
T Consensus 196 ~A~~~gaD~I~ld~~------~~---e~l~~~v~~i~~~-~~i~i~as---GGIt~~ni~~~a~~G-ad~Isv 254 (269)
T cd01568 196 EALEAGADIIMLDNM------SP---EELKEAVKLLKGL-PRVLLEAS---GGITLENIRAYAETG-VDVIST 254 (269)
T ss_pred HHHHcCCCEEEECCC------CH---HHHHHHHHHhccC-CCeEEEEE---CCCCHHHHHHHHHcC-CCEEEE
Confidence 334679999999863 22 2233333333221 22334444 778668899999999 999986
No 227
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=25.83 E-value=54 Score=22.51 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=20.6
Q ss_pred HHHHHHHHhhC---CCCCHHHHHHHHHH
Q 004263 16 ELKFALESFWD---GKSSADELQNVAAD 40 (765)
Q Consensus 16 eLk~A~e~yw~---g~i~~~eL~~~~~~ 40 (765)
|++++...|-+ |.||.+||....+.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 67888888874 88999999988765
No 228
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=25.60 E-value=7.8e+02 Score=25.98 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=45.0
Q ss_pred CcEEEEeccCCCchhhHHHHhcCCCc--cEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHH
Q 004263 236 LNVLIETYFADVPAETYKILTSLKGV--TGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDL 313 (765)
Q Consensus 236 ~~i~l~tyfg~~~~~~~~~l~~l~~v--d~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~ 313 (765)
..+.||+- +.. ++.++.|.+.. + .++.-=|. ++.+...+.+..+-.+|+|- ...+. + .+.++++
T Consensus 128 ~Pv~iH~r-~a~-~~~~~il~~~~-~~~~~i~H~fs---G~~~~a~~~l~~G~~iS~~g---~it~~-~----~~~~~~~ 193 (258)
T PRK11449 128 LPVILHSR-RTH-DKLAMHLKRHD-LPRTGVVHGFS---GSLQQAERFVQLGYKIGVGG---TITYP-R----ASKTRDV 193 (258)
T ss_pred CCEEEEec-Ccc-HHHHHHHHhcC-CCCCeEEEcCC---CCHHHHHHHHHCCCEEEeCc---ccccc-C----cHHHHHH
Confidence 35666654 445 66777777643 2 33333343 33443333222233455432 11111 1 1346677
Q ss_pred hhhcCCCcEEEeCCCCCc
Q 004263 314 AGTVGKDKVVVSTSCSLL 331 (765)
Q Consensus 314 ~~~~~~~~l~vspsC~L~ 331 (765)
++.+|.++|.+-|||+++
T Consensus 194 ~~~ipldriL~ETD~P~l 211 (258)
T PRK11449 194 IAKLPLASLLLETDAPDM 211 (258)
T ss_pred HHhCChhhEEEecCCCCC
Confidence 778899999999999987
No 229
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=25.24 E-value=8.9e+02 Score=26.18 Aligned_cols=114 Identities=15% Similarity=0.211 Sum_probs=64.1
Q ss_pred HHHHHHHHcCCc-EEEe-----cccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccC-------ChhH
Q 004263 589 DEVEDLEKAGIT-VIQI-----DEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYS-------NFND 655 (765)
Q Consensus 589 ~ev~~L~~aG~~-~IQi-----DEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g-------~~~~ 655 (765)
++++++.++|++ .|.+ |+-.|... -++.+. +...++++.+.+. +..+.+|+-+| ++..
T Consensus 127 ~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i--~Rg~t~----~~~~~ai~~l~~~---gi~v~~~lI~GlPget~e~~~~ 197 (302)
T TIGR01212 127 DLLAEYVERGYEVWVELGLQTAHDKTLKKI--NRGHDF----ACYVDAVKRARKR---GIKVCSHVILGLPGEDREEMME 197 (302)
T ss_pred HHHHHhhhCCceEEEEEccCcCCHHHHHHH--cCcChH----HHHHHHHHHHHHc---CCEEEEeEEECCCCCCHHHHHH
Confidence 445566678884 4655 33333221 112222 2345555555432 34677887777 2335
Q ss_pred HHHHHHcCCccEEEEec--CCCChhhHHH-hhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcE
Q 004263 656 IIHSIMDMDADVITIEN--SRSDEKLLSV-FREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNIL 727 (765)
Q Consensus 656 i~~~l~~l~~D~isiE~--~r~~~~~L~~-~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l 727 (765)
.+..+.++++|.+++=. ...+ -.|.. +.+ | .-...+.++..+.+..+++.++++.+
T Consensus 198 t~~~l~~l~~d~i~i~~l~~~pg-T~L~~~~~~----------g-----~~~~~~~~e~~~~~~~~l~~l~~~~~ 256 (302)
T TIGR01212 198 TAKIVSLLDVDGIKIHPLHVVKG-TKMAKMYEK----------G-----ELKTLSLEEYISLACDFLEHLPPEVV 256 (302)
T ss_pred HHHHHHhcCCCEEEEEEEEecCC-CHHHHHHHc----------C-----CCCCCCHHHHHHHHHHHHHhCCcCeE
Confidence 56777889999888751 1111 12222 221 1 12246788999999999999987654
No 230
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=25.24 E-value=2.3e+02 Score=28.29 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCCeEEeeccccccCC-ChHHHHHHHHHHHHHHccCCC-CcEEEEeccCCCchhhHHHHhcCCCccEEE
Q 004263 188 YKEVVAELKAAGATWIQFDEPTLVLDL-DSHKLQAFSDAYSELQSSLSG-LNVLIETYFADVPAETYKILTSLKGVTGFG 265 (765)
Q Consensus 188 y~~~l~~L~~~G~~~VQiDEP~L~~d~-~~~~~~~~~~~y~~l~~~~~~-~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~ 265 (765)
|.+.++.+.++|+++||+|..-..... ..-..+.+.+ +.+..+. ..+++.++ +. .+.++.+.+.. +|++.
T Consensus 14 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~----i~~~~~~~~~v~l~~~--d~-~~~~~~~~~~g-~dgv~ 85 (211)
T cd00429 14 LGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKA----LRKHTDLPLDVHLMVE--NP-ERYIEAFAKAG-ADIIT 85 (211)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHH----HHhhCCCcEEEEeeeC--CH-HHHHHHHHHcC-CCEEE
Confidence 456778888999999999862211100 0001122222 2211111 23445444 33 34577777888 99953
Q ss_pred E
Q 004263 266 F 266 (765)
Q Consensus 266 l 266 (765)
+
T Consensus 86 v 86 (211)
T cd00429 86 F 86 (211)
T ss_pred E
Confidence 3
No 231
>TIGR03558 oxido_grp_1 luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296.
Probab=25.01 E-value=1e+02 Score=33.56 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHH
Q 004263 704 RIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVA 752 (765)
Q Consensus 704 ~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~ 752 (765)
-+.|+|+|+++|++..+..+.+++++.|+. .+.++..+.++.+.+
T Consensus 278 iiGspe~v~~~l~~~~~~~G~d~~~~~~~~----~~~~~~~~s~~l~a~ 322 (323)
T TIGR03558 278 IVGSPETVREQLEALAERTGADELMVTTPI----YDHEARLRSYELLAE 322 (323)
T ss_pred EEcCHHHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHHhc
Confidence 467899999999998888899999998872 355666667666543
No 232
>PRK00915 2-isopropylmalate synthase; Validated
Probab=24.91 E-value=1.2e+03 Score=27.46 Aligned_cols=139 Identities=13% Similarity=0.129 Sum_probs=77.9
Q ss_pred HHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEe-c-cCChhHHHHHHHcCCccE
Q 004263 590 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHM-C-YSNFNDIIHSIMDMDADV 667 (765)
Q Consensus 590 ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~-C-~g~~~~i~~~l~~l~~D~ 667 (765)
.++.|.++|++.|.+==|+.. +.+ .+.++.+.+..+ +..|..++ | ..+++..++.+.+++++.
T Consensus 31 ia~~L~~~Gv~~IE~G~p~~s---------~~d-----~~~v~~i~~~~~-~~~i~a~~r~~~~did~a~~a~~~~~~~~ 95 (513)
T PRK00915 31 IAKQLERLGVDVIEAGFPASS---------PGD-----FEAVKRIARTVK-NSTVCGLARAVKKDIDAAAEALKPAEAPR 95 (513)
T ss_pred HHHHHHHcCCCEEEEcCCCCC---------hHH-----HHHHHHHHhhCC-CCEEEEEccCCHHHHHHHHHHhhcCCCCE
Confidence 445678899999998655432 222 122334433333 35555543 2 122333444445778888
Q ss_pred EEEecCCCCh-----------hhH-------HHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEE
Q 004263 668 ITIENSRSDE-----------KLL-------SVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWV 729 (765)
Q Consensus 668 isiE~~r~~~-----------~~L-------~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~v 729 (765)
+++-.+-|+. +.+ +..++ .+..+..+.-|+. .-+++.+.+.++.+.+ .+++.+.+
T Consensus 96 v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~---~g~~v~f~~ed~~---r~d~~~l~~~~~~~~~-~Ga~~i~l 168 (513)
T PRK00915 96 IHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARS---YTDDVEFSAEDAT---RTDLDFLCRVVEAAID-AGATTINI 168 (513)
T ss_pred EEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEEeCCCC---CCCHHHHHHHHHHHHH-cCCCEEEE
Confidence 8877433321 112 22233 2456766666653 3467888888887765 57888888
Q ss_pred cCCCCCCCCChhhHHHHHHHHHH
Q 004263 730 NPDCGLKTRKYSEVKPALSNMVA 752 (765)
Q Consensus 730 sPdCGL~~~~~~~~~~kL~~mv~ 752 (765)
.-..|..+ |.++..-++.|.+
T Consensus 169 ~DTvG~~~--P~~~~~~i~~l~~ 189 (513)
T PRK00915 169 PDTVGYTT--PEEFGELIKTLRE 189 (513)
T ss_pred ccCCCCCC--HHHHHHHHHHHHH
Confidence 88777774 5555555555543
No 233
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=24.80 E-value=7.2e+02 Score=25.71 Aligned_cols=75 Identities=12% Similarity=0.217 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCCCeEEeec--cccccCC--ChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCcc
Q 004263 187 VYKEVVAELKAAGATWIQFDE--PTLVLDL--DSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVT 262 (765)
Q Consensus 187 ~y~~~l~~L~~~G~~~VQiDE--P~L~~d~--~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd 262 (765)
-+.+++++|.++|++|+.+|= -.++.+. ....++.+++. .+...+-++..-.+. ...++.+.+.. +|
T Consensus 20 ~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~-------~~~~~lDvHLm~~~p-~~~i~~~~~~G-ad 90 (228)
T PTZ00170 20 KLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKH-------LPNTFLDCHLMVSNP-EKWVDDFAKAG-AS 90 (228)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhc-------CCCCCEEEEECCCCH-HHHHHHHHHcC-CC
Confidence 456888999999999999992 1222111 12223333322 111223333332233 44567777777 77
Q ss_pred EEEEEecc
Q 004263 263 GFGFDLIR 270 (765)
Q Consensus 263 ~l~lD~~~ 270 (765)
.+.+=+..
T Consensus 91 ~itvH~ea 98 (228)
T PTZ00170 91 QFTFHIEA 98 (228)
T ss_pred EEEEeccC
Confidence 76665543
No 234
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.30 E-value=2.5e+02 Score=30.44 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
+++.+..++|++.||+|- ++.+++ +++...+.. ++.+-.+ |++..+++.....+. ||.|..=..
T Consensus 208 eea~~a~~agaDiImLDn------mspe~l---~~av~~~~~---~~~leaS---GGI~~~ni~~yA~tG-VD~Is~gal 271 (290)
T PRK06559 208 AAAEEAAAAGADIIMLDN------MSLEQI---EQAITLIAG---RSRIECS---GNIDMTTISRFRGLA-IDYVSSGSL 271 (290)
T ss_pred HHHHHHHHcCCCEEEECC------CCHHHH---HHHHHHhcC---ceEEEEE---CCCCHHHHHHHHhcC-CCEEEeCcc
Confidence 345566788999999994 444443 333333322 2233334 778667888899999 999887654
No 235
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=23.80 E-value=9.5e+02 Score=25.99 Aligned_cols=135 Identities=13% Similarity=0.073 Sum_probs=70.6
Q ss_pred HHHHHHHHHHcCCcE-EEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccC-ChhHHHHHHHcCC
Q 004263 587 IKDEVEDLEKAGITV-IQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYS-NFNDIIHSIMDMD 664 (765)
Q Consensus 587 l~~ev~~L~~aG~~~-IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g-~~~~i~~~l~~l~ 664 (765)
++..++.-++.+..+ ||+.+..+....+ .+ ......+.+.+....++.|.+|+=-| +++. +....+++
T Consensus 31 ~~avi~AAe~~~sPvIiq~~~~~~~~~~~-----~~----~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~-i~~ai~~G 100 (285)
T PRK07709 31 TQAILAAAEEEKSPVILGVSEGAARHMTG-----FK----TVVAMVKALIEEMNITVPVAIHLDHGSSFEK-CKEAIDAG 100 (285)
T ss_pred HHHHHHHHHHHCCCEEEEcCcchhhhcCC-----HH----HHHHHHHHHHHHcCCCCcEEEECCCCCCHHH-HHHHHHcC
Confidence 334455556667764 9998877654111 11 22333333333322224688888766 5544 44667889
Q ss_pred ccEEEEecCCCCh-hhHHH-------hhhcccCCceeccccccCC-------CCCCCCHHHHHHHHHHHHhhcCCCcEEE
Q 004263 665 ADVITIENSRSDE-KLLSV-------FREGVKYRAGIGPGVYDIH-------SPRIPSTEEIADRINKMLAVLESNILWV 729 (765)
Q Consensus 665 ~D~isiE~~r~~~-~~L~~-------~~~~~~~~~~l~~GVvd~~-------s~~ve~~eev~~~i~~a~~~i~~~~l~v 729 (765)
++-+-+|.|.-++ +.++. ... .+..-+-=+|-|-+. .....+||+..+-+++. +.+ ++
T Consensus 101 ftSVM~DgS~lp~eeNi~~Trevv~~Ah~-~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~T----gvD--~L 173 (285)
T PRK07709 101 FTSVMIDASHHPFEENVETTKKVVEYAHA-RNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEAT----GID--CL 173 (285)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHh----CCC--EE
Confidence 9999999776554 23321 111 222223333444221 12256888887776654 444 44
Q ss_pred cCCCCCCCC
Q 004263 730 NPDCGLKTR 738 (765)
Q Consensus 730 sPdCGL~~~ 738 (765)
.++.|=.|-
T Consensus 174 AvaiGt~HG 182 (285)
T PRK07709 174 APALGSVHG 182 (285)
T ss_pred EEeeccccc
Confidence 445554443
No 236
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=23.70 E-value=8.6e+02 Score=25.45 Aligned_cols=74 Identities=24% Similarity=0.238 Sum_probs=42.8
Q ss_pred HHHcCCcEEEecccccccCCCCC---CCCHHHHHHHHHHHHHHHHccCCCCceEEEE--eccCChh---HHHHHHHcCCc
Q 004263 594 LEKAGITVIQIDEAALREGLPLR---KSEQDFYLKWAVHSFRITNCGVQDTTQVHTH--MCYSNFN---DIIHSIMDMDA 665 (765)
Q Consensus 594 L~~aG~~~IQiDEPaL~~~l~l~---~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H--~C~g~~~---~i~~~l~~l~~ 665 (765)
++++|++.|.+-.-.....+... ..+.++.+. ..+.+...+. ..+... +.||+.. .....+.+.++
T Consensus 25 ~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~----~~~~I~~~~~--~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~ 98 (243)
T cd00377 25 AERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLA----AVRRIARAVD--LPVIADADTGYGNALNVARTVRELEEAGA 98 (243)
T ss_pred HHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHH----HHHHHHhhcc--CCEEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 45669999999887765443222 233444433 3333444333 234444 3455543 34566778999
Q ss_pred cEEEEecC
Q 004263 666 DVITIENS 673 (765)
Q Consensus 666 D~isiE~~ 673 (765)
+++.||..
T Consensus 99 ~gv~iED~ 106 (243)
T cd00377 99 AGIHIEDQ 106 (243)
T ss_pred EEEEEecC
Confidence 99999953
No 237
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=23.68 E-value=9e+02 Score=25.70 Aligned_cols=83 Identities=11% Similarity=0.032 Sum_probs=53.7
Q ss_pred ceEEEEeccCChhHHHHHHHcCC--ccEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHH
Q 004263 642 TQVHTHMCYSNFNDIIHSIMDMD--ADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKML 719 (765)
Q Consensus 642 ~~I~~H~C~g~~~~i~~~l~~l~--~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~ 719 (765)
..+.+| |.+-.+++++.|.+.+ ..++--=++- +.+.++.+-+ .|-.|++|-+=+... +..+++++
T Consensus 126 lPviIH-~R~A~~d~~~iL~~~~~~~~gi~HcFsG-s~e~a~~~~d---~G~yisisG~itfk~--------a~~~~ev~ 192 (256)
T COG0084 126 LPVIIH-TRDAHEDTLEILKEEGAPVGGVLHCFSG-SAEEARKLLD---LGFYISISGIVTFKN--------AEKLREVA 192 (256)
T ss_pred CCEEEE-ccccHHHHHHHHHhcCCCCCEEEEccCC-CHHHHHHHHH---cCeEEEECceeecCC--------cHHHHHHH
Confidence 568889 5576778888888765 3333222322 4556666655 233455443333211 56778888
Q ss_pred hhcCCCcEEEcCCCCCCC
Q 004263 720 AVLESNILWVNPDCGLKT 737 (765)
Q Consensus 720 ~~i~~~~l~vsPdCGL~~ 737 (765)
+.+|.++|.+-+||.+.+
T Consensus 193 ~~iPldrLL~ETDsPyl~ 210 (256)
T COG0084 193 RELPLDRLLLETDAPYLA 210 (256)
T ss_pred HhCCHhHeEeccCCCCCC
Confidence 999999999999999874
No 238
>PRK08005 epimerase; Validated
Probab=23.65 E-value=8.2e+02 Score=25.20 Aligned_cols=73 Identities=12% Similarity=0.130 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCCCeEEeec--cccccC--CChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCcc
Q 004263 187 VYKEVVAELKAAGATWIQFDE--PTLVLD--LDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVT 262 (765)
Q Consensus 187 ~y~~~l~~L~~~G~~~VQiDE--P~L~~d--~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd 262 (765)
-+.+++++|.++|++||.+|= -.++.. .....++.+++. .. . ..++||-. .+. ...++.+.+.. +|
T Consensus 14 ~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~----t~-~-~~DvHLMv--~~P-~~~i~~~~~~g-ad 83 (210)
T PRK08005 14 RYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQ----TR-H-PLSFHLMV--SSP-QRWLPWLAAIR-PG 83 (210)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhc----CC-C-CeEEEecc--CCH-HHHHHHHHHhC-CC
Confidence 456888999999999999992 111111 123344444432 11 1 12444432 233 55678888776 66
Q ss_pred EEEEEec
Q 004263 263 GFGFDLI 269 (765)
Q Consensus 263 ~l~lD~~ 269 (765)
.+.+-+-
T Consensus 84 ~It~H~E 90 (210)
T PRK08005 84 WIFIHAE 90 (210)
T ss_pred EEEEccc
Confidence 6555444
No 239
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=23.48 E-value=9.8e+02 Score=26.03 Aligned_cols=147 Identities=14% Similarity=0.120 Sum_probs=75.3
Q ss_pred HHHHHHHHHcCCcEEEecccccc---cCCCCCC-CCHHHHHHHHHHHHHHHHccCC-CCceEEEEec-c--CChhHHHH-
Q 004263 588 KDEVEDLEKAGITVIQIDEAALR---EGLPLRK-SEQDFYLKWAVHSFRITNCGVQ-DTTQVHTHMC-Y--SNFNDIIH- 658 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDEPaL~---~~l~l~~-~~~~~~l~~~v~a~~~~~~~v~-~~~~I~~H~C-~--g~~~~i~~- 658 (765)
..-|+.++++|+.-|+|.+-... ..++.+. .+.+++.+ -++.+.+... ++.-|.--+. + ..+++.++
T Consensus 95 ~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~----kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~R 170 (294)
T TIGR02319 95 WRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTG----KIEAAVEAREDEDFTIIARTDARESFGLDEAIRR 170 (294)
T ss_pred HHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHH----HHHHHHHhccCCCeEEEEEecccccCCHHHHHHH
Confidence 45678889999999999885431 1111111 23333322 2322322221 2222222211 0 23455454
Q ss_pred --HHHcCCccEEEEecCCCChhhHHHhhhcccCCceeccccccC-CCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 004263 659 --SIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDI-HSPRIPSTEEIADRINKMLAVLESNILWVNPDCGL 735 (765)
Q Consensus 659 --~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~-~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL 735 (765)
.-.++++|+|.++... +.+.++.|.+. .+..+.+-++.+ .+| ..+.+++ ..+|...+...+.
T Consensus 171 a~aY~eAGAD~ifi~~~~-~~~ei~~~~~~--~~~P~~~nv~~~~~~p-~~s~~eL--------~~lG~~~v~~~~~--- 235 (294)
T TIGR02319 171 SREYVAAGADCIFLEAML-DVEEMKRVRDE--IDAPLLANMVEGGKTP-WLTTKEL--------ESIGYNLAIYPLS--- 235 (294)
T ss_pred HHHHHHhCCCEEEecCCC-CHHHHHHHHHh--cCCCeeEEEEecCCCC-CCCHHHH--------HHcCCcEEEEcHH---
Confidence 3357999999999644 44556666541 222232223322 223 2355554 4466666665543
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHH
Q 004263 736 KTRKYSEVKPALSNMVAAAKLLRT 759 (765)
Q Consensus 736 ~~~~~~~~~~kL~~mv~aa~~~r~ 759 (765)
-.++.++.|.++++.+++
T Consensus 236 ------~~~aa~~a~~~~~~~l~~ 253 (294)
T TIGR02319 236 ------GWMAAASVLRKLFTELRE 253 (294)
T ss_pred ------HHHHHHHHHHHHHHHHHH
Confidence 346777777777777764
No 240
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=23.40 E-value=1.7e+02 Score=32.12 Aligned_cols=62 Identities=19% Similarity=0.235 Sum_probs=35.0
Q ss_pred cCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEEEEe
Q 004263 597 AGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVITIE 671 (765)
Q Consensus 597 aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~isiE 671 (765)
+|+++||+|---+... .+ +.++++ +..+++. ++.. +.+-.. |+.+ +.+.....+++|+||+=
T Consensus 228 agaDiImLDnm~~~~~-~~-~~~~e~-l~~av~~-------~~~~--~~lEaS-GGIt~~ni~~yA~tGVD~Is~G 290 (308)
T PLN02716 228 TSLTRVMLDNMVVPLE-NG-DVDVSM-LKEAVEL-------INGR--FETEAS-GNVTLDTVHKIGQTGVTYISSG 290 (308)
T ss_pred CCCCEEEeCCCccccc-cc-CCCHHH-HHHHHHh-------hCCC--ceEEEE-CCCCHHHHHHHHHcCCCEEEeC
Confidence 8999999997532210 00 113332 2333332 2211 224434 6654 56788889999999987
No 241
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=23.38 E-value=3e+02 Score=29.49 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=40.7
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
+++.+..++|+++||+|-- . .+.++++.+.+.+ +..+... |++..++++.+.+.. ||++.+=..
T Consensus 193 eea~~A~~~gaDyI~ld~~------~---~e~l~~~~~~~~~---~ipi~Ai---GGI~~~ni~~~a~~G-vd~Iav~sl 256 (268)
T cd01572 193 EQLKEALEAGADIIMLDNM------S---PEELREAVALLKG---RVLLEAS---GGITLENIRAYAETG-VDYISVGAL 256 (268)
T ss_pred HHHHHHHHcCCCEEEECCc------C---HHHHHHHHHHcCC---CCcEEEE---CCCCHHHHHHHHHcC-CCEEEEEee
Confidence 3445556789999999841 2 2334444333321 2344444 788668899999999 999887543
No 242
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=23.33 E-value=8e+02 Score=25.58 Aligned_cols=93 Identities=18% Similarity=0.266 Sum_probs=50.7
Q ss_pred hHHHHHH-HHcCCCCceEeehHHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCCh
Q 004263 138 VQEYKEA-KALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDS 216 (765)
Q Consensus 138 ~~e~~~a-~~~g~~~K~vl~GP~T~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~ 216 (765)
+++++.. ++.| ++.++-||+.+ .++.. ++ +...+-...+.+.++-..+.||+.|.+.-........+
T Consensus 47 ~~~l~~~~~~~g--l~ls~h~p~~~-nl~s~--------d~-~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e 114 (273)
T smart00518 47 AEKFKEALKENN--IDVSVHAPYLI-NLASP--------DK-EKVEKSIERLIDEIKRCEELGIKALVFHPGSYLKQSKE 114 (273)
T ss_pred HHHHHHHHHHcC--CCEEEECCcee-cCCCC--------CH-HHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCHH
Confidence 4444433 3445 45778888653 22211 22 33444456677777777888999999864432111123
Q ss_pred HHHHHHHHHHHHHHccCCCCcEEEEe
Q 004263 217 HKLQAFSDAYSELQSSLSGLNVLIET 242 (765)
Q Consensus 217 ~~~~~~~~~y~~l~~~~~~~~i~l~t 242 (765)
+..+.+.+.+..+.+....+.+.|-+
T Consensus 115 ~~~~~~~~~l~~l~~~~~gv~l~lEn 140 (273)
T smart00518 115 EALNRIIESLNEVIDETKGVVILLET 140 (273)
T ss_pred HHHHHHHHHHHHHHhccCCcEEEEec
Confidence 34566666666665532234566643
No 243
>PRK12928 lipoyl synthase; Provisional
Probab=23.26 E-value=8.8e+02 Score=26.18 Aligned_cols=147 Identities=16% Similarity=0.197 Sum_probs=76.4
Q ss_pred HHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCCh----hHHHHHHHcCC
Q 004263 589 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNF----NDIIHSIMDMD 664 (765)
Q Consensus 589 ~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~----~~i~~~l~~l~ 664 (765)
++++++.+.|++.|-|---. ..+++ ..+. +++.+.++.+.+..+ . +.++.+..++ .+.+..+.+.+
T Consensus 94 ~~a~~~~~~G~keivitg~~-~dDl~--d~g~----~~~~ell~~Ik~~~p-~--~~I~~ltp~~~~~~~e~L~~l~~Ag 163 (290)
T PRK12928 94 RVAEAVAALGLRYVVLTSVA-RDDLP--DGGA----AHFVATIAAIRARNP-G--TGIEVLTPDFWGGQRERLATVLAAK 163 (290)
T ss_pred HHHHHHHHCCCCEEEEEEEe-CCccc--ccCH----HHHHHHHHHHHhcCC-C--CEEEEeccccccCCHHHHHHHHHcC
Confidence 44455667799866552111 11121 0111 233444444333222 3 3456554443 46778888888
Q ss_pred ccEEEE--ecC--------CC-C----hhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEE
Q 004263 665 ADVITI--ENS--------RS-D----EKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWV 729 (765)
Q Consensus 665 ~D~isi--E~~--------r~-~----~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~v 729 (765)
++++.. |++ +. . ++.++.+++ .+-+-.+..|++=++ -|+.|++.+.++.+.+ ++.+.+-|
T Consensus 164 ~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~-~gp~i~~~s~iIvG~---GET~ed~~etl~~Lre-l~~d~v~i 238 (290)
T PRK12928 164 PDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKE-LAPDIPTKSGLMLGL---GETEDEVIETLRDLRA-VGCDRLTI 238 (290)
T ss_pred chhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHH-hCCCceecccEEEeC---CCCHHHHHHHHHHHHh-cCCCEEEE
Confidence 887764 422 11 1 233444443 111134555555554 5899999999888754 78888888
Q ss_pred cCCCC--CCCC-----ChhhHHHHHHHH
Q 004263 730 NPDCG--LKTR-----KYSEVKPALSNM 750 (765)
Q Consensus 730 sPdCG--L~~~-----~~~~~~~kL~~m 750 (765)
.+=+- .+|. -.++.++.++..
T Consensus 239 ~~Yl~p~~~~~~v~~~~~~~~f~~~~~~ 266 (290)
T PRK12928 239 GQYLRPSLAHLPVQRYWTPEEFEALGQI 266 (290)
T ss_pred EcCCCCCccCCceeeccCHHHHHHHHHH
Confidence 76433 4443 223455555543
No 244
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=23.21 E-value=8.9e+02 Score=25.46 Aligned_cols=116 Identities=13% Similarity=0.178 Sum_probs=63.6
Q ss_pred eEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCc---hhhHHHHhcCCC-ccEEEEEeccCCCChhh
Q 004263 202 WIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP---AETYKILTSLKG-VTGFGFDLIRGTKTLDL 277 (765)
Q Consensus 202 ~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~---~~~~~~l~~l~~-vd~l~lD~~~~~~~l~~ 277 (765)
.|-|=|--|- +.++++++.|+.... |+... .+.+++||--++=. ..+++.+.+++- -+-+-+|-+ +.+.++.
T Consensus 97 VvAiGEiGLe-~~t~~E~evf~~QL~-LA~e~-dvPviVHTPr~nK~e~t~~ildi~~~~~l~~~lvvIDH~-N~etv~~ 172 (254)
T COG1099 97 VVAIGEIGLE-EATDEEKEVFREQLE-LAREL-DVPVIVHTPRRNKKEATSKILDILIESGLKPSLVVIDHV-NEETVDE 172 (254)
T ss_pred eeEeeecccc-cCCHHHHHHHHHHHH-HHHHc-CCcEEEeCCCCcchhHHHHHHHHHHHcCCChhheehhcc-cHHHHHH
Confidence 4566664332 356778888887754 44433 35789999876520 344555543330 333333322 2233443
Q ss_pred HhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcc
Q 004263 278 IKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLH 332 (765)
Q Consensus 278 l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h 332 (765)
+.+ .+-.+++-| +- -+-+.++..+.+++- |++|+++++|||-+-
T Consensus 173 vld---~e~~vGlTv---qP-gKlt~~eAveIV~ey----~~~r~ilnSD~~s~~ 216 (254)
T COG1099 173 VLD---EEFYVGLTV---QP-GKLTVEEAVEIVREY----GAERIILNSDAGSAA 216 (254)
T ss_pred HHh---ccceEEEEe---cC-CcCCHHHHHHHHHHh----CcceEEEeccccccc
Confidence 332 333444444 22 445566665665543 479999999999863
No 245
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=23.06 E-value=4.7e+02 Score=29.20 Aligned_cols=63 Identities=19% Similarity=0.194 Sum_probs=38.4
Q ss_pred HHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEEE
Q 004263 590 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVIT 669 (765)
Q Consensus 590 ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~is 669 (765)
.+..+.+.|+.+||+-++.+. ..++++.+.. +..++... +..+.+| +-++.-...++|+++
T Consensus 162 ~l~~al~~Gv~~VQLR~K~~~---------~~~~~~~a~~-L~~l~~~~--~~~lIIN-------D~vdlAl~~~aDGVH 222 (347)
T PRK02615 162 VVEAALKGGVTLVQYRDKTAD---------DRQRLEEAKK-LKELCHRY--GALFIVN-------DRVDIALAVDADGVH 222 (347)
T ss_pred HHHHHHHcCCCEEEECCCCCC---------HHHHHHHHHH-HHHHHHHh--CCeEEEe-------ChHHHHHHcCCCEEE
Confidence 355666889999999877653 2334444443 33333332 2445565 235666778999999
Q ss_pred Ee
Q 004263 670 IE 671 (765)
Q Consensus 670 iE 671 (765)
+.
T Consensus 223 Lg 224 (347)
T PRK02615 223 LG 224 (347)
T ss_pred eC
Confidence 96
No 246
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=23.02 E-value=6e+02 Score=29.30 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=41.8
Q ss_pred HHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEEEE
Q 004263 591 VEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITI 670 (765)
Q Consensus 591 v~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~isi 670 (765)
++.+.+.|+++||+-|..+. .+++.+.+..+...+ ... ++++.++ +-++...++++|++++
T Consensus 223 ve~aL~aGv~~VQLReK~ls---------~~el~~la~~l~~l~-~~~--gv~LiIN-------D~~dlAl~~gAdGVHL 283 (437)
T PRK12290 223 IERLLPLGINTVQLRIKDPQ---------QADLEQQIIRAIALG-REY--NAQVFIN-------DYWQLAIKHQAYGVHL 283 (437)
T ss_pred HHHHHhCCCCEEEEeCCCCC---------HHHHHHHHHHHHHHH-HHh--CCEEEEE-------CHHHHHHHcCCCEEEc
Confidence 66777899999999887653 245555555544333 222 3566666 3477778899999998
Q ss_pred e
Q 004263 671 E 671 (765)
Q Consensus 671 E 671 (765)
-
T Consensus 284 G 284 (437)
T PRK12290 284 G 284 (437)
T ss_pred C
Confidence 7
No 247
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=22.87 E-value=1.1e+03 Score=26.36 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCcc
Q 004263 587 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD 666 (765)
Q Consensus 587 l~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D 666 (765)
+.++++.+.+.|++-|.|= .+-+....+. + ...++++.+.+..+ .+++|.. .-..+-+..|.+++++
T Consensus 109 I~~~a~~~~~~Gv~~i~lv-----gGe~p~~~~~-e---~l~~~i~~Ik~~~p---~i~i~~g-~lt~e~l~~Lk~aGv~ 175 (371)
T PRK09240 109 IEREMAAIKKLGFEHILLL-----TGEHEAKVGV-D---YIRRALPIAREYFS---SVSIEVQ-PLSEEEYAELVELGLD 175 (371)
T ss_pred HHHHHHHHHhCCCCEEEEe-----eCCCCCCCCH-H---HHHHHHHHHHHhCC---CceeccC-CCCHHHHHHHHHcCCC
Confidence 3344555667899865552 1211111122 2 33334444333333 2344432 2223567889999999
Q ss_pred EEE--Eec
Q 004263 667 VIT--IEN 672 (765)
Q Consensus 667 ~is--iE~ 672 (765)
.++ +|+
T Consensus 176 r~~i~lET 183 (371)
T PRK09240 176 GVTVYQET 183 (371)
T ss_pred EEEEEEec
Confidence 987 555
No 248
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=22.49 E-value=4e+02 Score=30.78 Aligned_cols=72 Identities=18% Similarity=0.174 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHH--HcCC
Q 004263 587 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSI--MDMD 664 (765)
Q Consensus 587 l~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l--~~l~ 664 (765)
|.+.++++.++|++.|.|=+.+=.. .|.+ ....+.+++..+. + ...+|+|.-+|- .+...+ .+++
T Consensus 156 ~~~~a~~l~~~Gad~I~i~Dt~G~l-------~P~~-v~~lv~alk~~~~-~--pi~~H~Hnt~Gl--A~AN~laAieaG 222 (448)
T PRK12331 156 FVKLAKEMQEMGADSICIKDMAGIL-------TPYV-AYELVKRIKEAVT-V--PLEVHTHATSGI--AEMTYLKAIEAG 222 (448)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCC-------CHHH-HHHHHHHHHHhcC-C--eEEEEecCCCCc--HHHHHHHHHHcC
Confidence 4445566778999999998766432 2332 2234445554432 3 255666655564 334444 4567
Q ss_pred ccEEEEe
Q 004263 665 ADVITIE 671 (765)
Q Consensus 665 ~D~isiE 671 (765)
+|.|..=
T Consensus 223 ad~vD~s 229 (448)
T PRK12331 223 ADIIDTA 229 (448)
T ss_pred CCEEEee
Confidence 7765443
No 249
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=22.19 E-value=3.4e+02 Score=32.32 Aligned_cols=74 Identities=12% Similarity=0.048 Sum_probs=41.4
Q ss_pred HHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHcc--CCCCceE--EEEeccCChhHHHHHHHcCCc
Q 004263 590 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCG--VQDTTQV--HTHMCYSNFNDIIHSIMDMDA 665 (765)
Q Consensus 590 ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~--v~~~~~I--~~H~C~g~~~~i~~~l~~l~~ 665 (765)
.++.|.++|++.|.+==|+-. +.+ .++++.+.+. ++++..+ ..++..++++..++.+..++.
T Consensus 53 ia~~L~~~Gvd~IE~Gfp~~s---------~~D-----~e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~~~ 118 (564)
T TIGR00970 53 YFDLLVRIGFKEIEVGFPSAS---------QTD-----FDFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGAKR 118 (564)
T ss_pred HHHHHHHcCCCEEEEeCCCCC---------HHH-----HHHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCCCC
Confidence 344578899999988755543 111 2233333332 2222333 445555556666666666777
Q ss_pred cEEEEecCCCCh
Q 004263 666 DVITIENSRSDE 677 (765)
Q Consensus 666 D~isiE~~r~~~ 677 (765)
+.+++=.+.|+.
T Consensus 119 ~~v~i~~~~Sd~ 130 (564)
T TIGR00970 119 ATVHFYNATSIL 130 (564)
T ss_pred CEEEEEEcCCHH
Confidence 788887555543
No 250
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=21.93 E-value=7.3e+02 Score=24.20 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCC-CCcEEEEeccCC
Q 004263 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLS-GLNVLIETYFAD 246 (765)
Q Consensus 188 y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~-~~~i~l~tyfg~ 246 (765)
|..++...-+.|+..|-|+||.+..- -.+.-|-+..+-+.+... ...|+|.|.-+.
T Consensus 7 Yd~LFg~Yl~d~~~~I~ieDPYir~~---hQi~Nl~~F~El~vk~~~~~~~i~LvT~~d~ 63 (148)
T cd02685 7 YDRLFGPYLDDGVTEITVEDPYIRNF---HQIRNFLRFCELVVKPPCELKYIHLVTGEDE 63 (148)
T ss_pred HHHHHHHHHhCCceEEEEeCccccch---HHHHHHHHHHHHHhcCccceEEEEEEecCCC
Confidence 66677777788999999999998752 234455555555554321 238888888753
No 251
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=21.35 E-value=9.2e+02 Score=25.81 Aligned_cols=78 Identities=21% Similarity=0.112 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHH---HHH
Q 004263 585 LAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIH---SIM 661 (765)
Q Consensus 585 ~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~---~l~ 661 (765)
.+++..+..+.+.|++-|.+-- +..|...+ +.++..+ .++.+.+.++....|..|+|. +..+.++ ...
T Consensus 21 ~~l~~l~~~l~~~Gv~gi~v~G-stGE~~~L---s~eEr~~----l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~ 91 (289)
T cd00951 21 DAYRAHVEWLLSYGAAALFAAG-GTGEFFSL---TPDEYAQ----VVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAE 91 (289)
T ss_pred HHHHHHHHHHHHcCCCEEEECc-CCcCcccC---CHHHHHH----HHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHH
Confidence 4678888889999998766542 12222222 2333222 223333333334668888885 7665554 446
Q ss_pred cCCccEEEEe
Q 004263 662 DMDADVITIE 671 (765)
Q Consensus 662 ~l~~D~isiE 671 (765)
++++|++.+=
T Consensus 92 ~~Gad~v~~~ 101 (289)
T cd00951 92 KAGADGILLL 101 (289)
T ss_pred HhCCCEEEEC
Confidence 7899999886
No 252
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=21.22 E-value=2.2e+02 Score=31.49 Aligned_cols=84 Identities=21% Similarity=0.277 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEec--------
Q 004263 578 ETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMC-------- 649 (765)
Q Consensus 578 e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C-------- 649 (765)
.-++++..+|++.+...+++|.++|-+---+|... ..++++|++ .|.++++.+. ..+++|--
T Consensus 125 ~sld~V~~AY~eQ~~~ve~~Gg~~ILMASRaLA~~----A~~p~DY~~----VY~~lL~q~~--~PVILHWLG~mFDPaL 194 (382)
T PF06187_consen 125 ASLDDVIAAYEEQLEAVEAAGGRVILMASRALAAV----ARSPDDYLR----VYDRLLSQAD--EPVILHWLGDMFDPAL 194 (382)
T ss_dssp --HHHHHHHHHHHHHHHHHTT--EEE---HHHHHH------SHHHHHH----HHHHHHHH-S--S-EEEEEE-TTT-GGG
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEeehHHHHHh----hCCHHHHHH----HHHHHHHHcC--CCEEEEecccccCccc
Confidence 45788899999999999999999998877666542 135677654 5666666664 46788854
Q ss_pred ---cCC--hh----HHHHHHH--cCCccEEEEe
Q 004263 650 ---YSN--FN----DIIHSIM--DMDADVITIE 671 (765)
Q Consensus 650 ---~g~--~~----~i~~~l~--~l~~D~isiE 671 (765)
||. +. ..++.|. .-++|+|-+-
T Consensus 195 ~GYWGs~d~~~A~~t~l~lI~~~~~kVdGIKiS 227 (382)
T PF06187_consen 195 AGYWGSADLDAAMDTVLELIAAHADKVDGIKIS 227 (382)
T ss_dssp TTTTS-SSHHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred ccccCCCcHHHHHHHHHHHHHhChhhcCeeEec
Confidence 342 22 3444554 2467887765
No 253
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=21.20 E-value=1.1e+03 Score=27.76 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=35.1
Q ss_pred eccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHH
Q 004263 693 IGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMV 751 (765)
Q Consensus 693 l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv 751 (765)
+..|.=|.. ..+++-+.+.++++.+ .+++++.+.---|..+ |.++..-++.+.
T Consensus 226 v~f~~EDa~---Rtd~efl~~~~~~a~~-~Gad~I~l~DTvG~~t--P~~v~~lV~~l~ 278 (503)
T PLN03228 226 IQFGCEDGG---RSDKEFLCKILGEAIK-AGATSVGIADTVGINM--PHEFGELVTYVK 278 (503)
T ss_pred EEecccccc---ccCHHHHHHHHHHHHh-cCCCEEEEecCCCCCC--HHHHHHHHHHHH
Confidence 555664542 3468888888888866 5889999988888875 444444444443
No 254
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.20 E-value=2e+02 Score=30.92 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=33.9
Q ss_pred HHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEEEEe
Q 004263 593 DLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVITIE 671 (765)
Q Consensus 593 ~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~isiE 671 (765)
+..++|+++||+|-. ++++ ++.+++.. ++... +- +-|+.+ +.++.+.++++|+|++=
T Consensus 204 eA~~~gaD~I~LD~~-----------~~e~-l~~~v~~~-------~~~i~--le-AsGGIt~~ni~~~a~tGvD~Isvg 261 (277)
T PRK05742 204 QALAAGADIVMLDEL-----------SLDD-MREAVRLT-------AGRAK--LE-ASGGINESTLRVIAETGVDYISIG 261 (277)
T ss_pred HHHHcCCCEEEECCC-----------CHHH-HHHHHHHh-------CCCCc--EE-EECCCCHHHHHHHHHcCCCEEEEC
Confidence 345789999999832 2332 22233221 11221 22 226554 66888899999999987
No 255
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=20.99 E-value=9.7e+02 Score=25.09 Aligned_cols=142 Identities=13% Similarity=0.127 Sum_probs=83.2
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
++++.|.++|++.|++-=|.+. +.+.+.++ .+.+.....+ +..+ .....+-++...+.. ++.+++=+.
T Consensus 24 ~i~~~L~~~Gv~~iE~g~p~~~----~~~~e~~~----~l~~~~~~~~--~~~~-~r~~~~~v~~a~~~g-~~~i~i~~~ 91 (259)
T cd07939 24 AIARALDEAGVDEIEVGIPAMG----EEEREAIR----AIVALGLPAR--LIVW-CRAVKEDIEAALRCG-VTAVHISIP 91 (259)
T ss_pred HHHHHHHHcCCCEEEEecCCCC----HHHHHHHH----HHHhcCCCCE--EEEe-ccCCHHHHHHHHhCC-cCEEEEEEe
Confidence 4566788999999999755432 23333333 3333212223 3322 211123356667888 998888664
Q ss_pred cCCC------------ChhhHhh---h-CCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCccc
Q 004263 270 RGTK------------TLDLIKT---E-FPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHT 333 (765)
Q Consensus 270 ~~~~------------~l~~l~~---~-~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h~ 333 (765)
.+.. .++.+.. . -..+..+.+|+.|+ .+.+++.+.+.++++.+ .|.+++++.-+.|.+ .
T Consensus 92 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~---~~~~~~~~~~~~~~~~~-~G~~~i~l~DT~G~~-~ 166 (259)
T cd07939 92 VSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDA---SRADPDFLIEFAEVAQE-AGADRLRFADTVGIL-D 166 (259)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccC---CCCCHHHHHHHHHHHHH-CCCCEEEeCCCCCCC-C
Confidence 3211 0111111 0 11355788888765 35789999999998876 588999999999987 3
Q ss_pred ccccccccCCcHHHHhHHHHHHHHH
Q 004263 334 AVDLENETKLDQEIKSWLAFAAQKV 358 (765)
Q Consensus 334 P~~~~~E~~l~~~~~~~lafA~qKl 358 (765)
|. ++...+.-.++++
T Consensus 167 P~----------~v~~lv~~l~~~~ 181 (259)
T cd07939 167 PF----------TTYELIRRLRAAT 181 (259)
T ss_pred HH----------HHHHHHHHHHHhc
Confidence 53 4455555555444
No 256
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=20.78 E-value=1.2e+03 Score=26.11 Aligned_cols=142 Identities=10% Similarity=0.052 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHH---HHHHHc
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDI---IHSIMD 662 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i---~~~l~~ 662 (765)
.+.+.+.++...|++.|-.||..--. +. ..+++-.+.+.++.+++.+.-...+.....++ +..+++ .+...+
T Consensus 142 ~~a~~~~~~~~gGvD~IKdDe~l~~~--~~--~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nit-a~~~em~~ra~~a~~ 216 (364)
T cd08210 142 ELAELAYAFALGGIDIIKDDHGLADQ--PF--APFEERVKACQEAVAEANAETGGRTLYAPNVT-GPPTQLLERARFAKE 216 (364)
T ss_pred HHHHHHHHHHhcCCCeeecCccccCc--cC--CCHHHHHHHHHHHHHHHHhhcCCcceEEEecC-CCHHHHHHHHHHHHH
Confidence 34445556778999999999964321 11 23455556667777776654333333444444 444444 445567
Q ss_pred CCccEEEEecCCCChhhHHHhhhccc----CCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEc-CCCCCC
Q 004263 663 MDADVITIENSRSDEKLLSVFREGVK----YRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVN-PDCGLK 736 (765)
Q Consensus 663 l~~D~isiE~~r~~~~~L~~~~~~~~----~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vs-PdCGL~ 736 (765)
++++++-+.....++..+..+.+... ....-+.|.+. +++.-=+.. -.+.++.+..+.+.+.++ |..+|.
T Consensus 217 ~Ga~~vMv~~~~~G~~~~~~l~~~~~~l~i~aHra~~ga~~-~~~~~is~~---~~~~kl~RlaGad~~~~~~~~g~~~ 291 (364)
T cd08210 217 AGAGGVLIAPGLTGLDTFRELAEDFDFLPILAHPAFAGAFV-SSGDGISHA---LLFGTLFRLAGADAVIFPNYGGRFG 291 (364)
T ss_pred cCCCEEEeecccchHHHHHHHHhcCCCcEEEEccccccccc-cCCCcccHH---HHHHHHHHHhCCCEEEeCCCcCCcc
Confidence 89999999954445555555554111 11123445555 222211111 125556666777776544 444333
No 257
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=20.71 E-value=4.7e+02 Score=30.43 Aligned_cols=72 Identities=17% Similarity=0.138 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHH--HcC
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSI--MDM 663 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l--~~l 663 (765)
.+.+.++++.++|++.|.|=+.+=.. .|.+ ....+.+++..+. + ...+|+|.-+|- .+...+ .+.
T Consensus 154 ~~~~~a~~l~~~Gad~I~i~Dt~G~l-------~P~~-v~~Lv~~lk~~~~-v--pI~~H~Hnt~Gl--A~AN~laAiea 220 (467)
T PRK14041 154 YYLEFARELVDMGVDSICIKDMAGLL-------TPKR-AYELVKALKKKFG-V--PVEVHSHCTTGL--ASLAYLAAVEA 220 (467)
T ss_pred HHHHHHHHHHHcCCCEEEECCccCCc-------CHHH-HHHHHHHHHHhcC-C--ceEEEecCCCCc--HHHHHHHHHHh
Confidence 34445556778999999998866432 2332 2234445554432 3 356666655554 344444 356
Q ss_pred CccEEEE
Q 004263 664 DADVITI 670 (765)
Q Consensus 664 ~~D~isi 670 (765)
++|.|..
T Consensus 221 Gad~vD~ 227 (467)
T PRK14041 221 GADMFDT 227 (467)
T ss_pred CCCEEEe
Confidence 7776543
No 258
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=20.64 E-value=5.4e+02 Score=25.47 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEE
Q 004263 589 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 668 (765)
Q Consensus 589 ~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~i 668 (765)
+.+..+.+.|+++||+-++.+. ..++.+.+.. +...+... +..+.+|- -++...+.++|++
T Consensus 17 ~~~~~~~~~g~~~v~lR~~~~~---------~~~~~~~~~~-l~~~~~~~--~~~l~i~~-------~~~la~~~g~~Gv 77 (196)
T TIGR00693 17 NRVEAALKGGVTLVQLRDKGSN---------TRERLALAEK-LQELCRRY--GVPFIVND-------RVDLALALGADGV 77 (196)
T ss_pred HHHHHHHhcCCCEEEEecCCCC---------HHHHHHHHHH-HHHHHHHh--CCeEEEEC-------HHHHHHHcCCCEE
Confidence 3455667889999999877543 2333333333 33333222 24566662 2567778999999
Q ss_pred EEe
Q 004263 669 TIE 671 (765)
Q Consensus 669 siE 671 (765)
++.
T Consensus 78 Hl~ 80 (196)
T TIGR00693 78 HLG 80 (196)
T ss_pred ecC
Confidence 996
No 259
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=20.62 E-value=3.7e+02 Score=28.83 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=36.5
Q ss_pred HHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 004263 193 AELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (765)
Q Consensus 193 ~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD 267 (765)
.+..++|+++|++|- +. +.+.+ ++...+....+...+... |++..++++.+.+.. ||++.+=
T Consensus 197 ~~A~~~gaD~I~ld~-~~-----p~~l~---~~~~~~~~~~~~i~i~As---GGI~~~ni~~~~~~G-vd~I~vs 258 (272)
T cd01573 197 LAAAEAGADILQLDK-FS-----PEELA---ELVPKLRSLAPPVLLAAA---GGINIENAAAYAAAG-ADILVTS 258 (272)
T ss_pred HHHHHcCCCEEEECC-CC-----HHHHH---HHHHHHhccCCCceEEEE---CCCCHHHHHHHHHcC-CcEEEEC
Confidence 334578999999993 22 22333 222223221112344444 777557889999999 9998443
No 260
>PRK00915 2-isopropylmalate synthase; Validated
Probab=20.46 E-value=1.1e+03 Score=27.82 Aligned_cols=132 Identities=11% Similarity=0.114 Sum_probs=78.4
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEe--ccCCCchhhHHHHhcCCCccEEEEE
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIET--YFADVPAETYKILTSLKGVTGFGFD 267 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~t--yfg~~~~~~~~~l~~l~~vd~l~lD 267 (765)
++++.|.++|++.|++==|.. ++.+.+.++..-. .....++..-+ --.++ +..++.+.+.. ++.+++-
T Consensus 30 ~ia~~L~~~Gv~~IE~G~p~~----s~~d~~~v~~i~~----~~~~~~i~a~~r~~~~di-d~a~~a~~~~~-~~~v~i~ 99 (513)
T PRK00915 30 QIAKQLERLGVDVIEAGFPAS----SPGDFEAVKRIAR----TVKNSTVCGLARAVKKDI-DAAAEALKPAE-APRIHTF 99 (513)
T ss_pred HHHHHHHHcCCCEEEEcCCCC----ChHHHHHHHHHHh----hCCCCEEEEEccCCHHHH-HHHHHHhhcCC-CCEEEEE
Confidence 455668889999999865632 3345554433322 11223333221 12234 44455555777 8888877
Q ss_pred eccCC------------CChhhHhhh--C--CCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 004263 268 LIRGT------------KTLDLIKTE--F--PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (765)
Q Consensus 268 ~~~~~------------~~l~~l~~~--~--p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~ 331 (765)
..... +.++.+.+. + ..+..+.++.-|+ .+.|++.+++.++.+.+ .|++++.+.-..|..
T Consensus 100 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~---~r~d~~~l~~~~~~~~~-~Ga~~i~l~DTvG~~ 175 (513)
T PRK00915 100 IATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDA---TRTDLDFLCRVVEAAID-AGATTINIPDTVGYT 175 (513)
T ss_pred ECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCC---CCCCHHHHHHHHHHHHH-cCCCEEEEccCCCCC
Confidence 64321 112222110 1 1345688888765 47899999999999876 588999999999887
Q ss_pred ccccc
Q 004263 332 HTAVD 336 (765)
Q Consensus 332 h~P~~ 336 (765)
.|..
T Consensus 176 -~P~~ 179 (513)
T PRK00915 176 -TPEE 179 (513)
T ss_pred -CHHH
Confidence 3543
No 261
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=20.45 E-value=4.5e+02 Score=30.83 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCc--eEEEEeccCChhHHHHHH--H
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTT--QVHTHMCYSNFNDIIHSI--M 661 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~--~I~~H~C~g~~~~i~~~l--~ 661 (765)
.|.+.++.+.++|++.|.|=+.+-.. .|.+ ....+.+++. .++++. .+|+|.-+|- .+...+ .
T Consensus 156 ~~~~~a~~l~~~Gad~I~IkDtaGll-------~P~~-~~~LV~~Lk~---~~~~~ipI~~H~Hnt~Gl--A~An~laAi 222 (499)
T PRK12330 156 GFVEQAKRLLDMGADSICIKDMAALL-------KPQP-AYDIVKGIKE---ACGEDTRINLHCHSTTGV--TLVSLMKAI 222 (499)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCccCC-------CHHH-HHHHHHHHHH---hCCCCCeEEEEeCCCCCc--HHHHHHHHH
Confidence 34445566778999999998766432 2332 2233444443 343234 4455544454 234444 4
Q ss_pred cCCccEEEE
Q 004263 662 DMDADVITI 670 (765)
Q Consensus 662 ~l~~D~isi 670 (765)
+.++|.|..
T Consensus 223 eAGad~vDt 231 (499)
T PRK12330 223 EAGVDVVDT 231 (499)
T ss_pred HcCCCEEEe
Confidence 567776533
No 262
>PRK07695 transcriptional regulator TenI; Provisional
Probab=20.43 E-value=8.7e+02 Score=24.28 Aligned_cols=59 Identities=8% Similarity=0.081 Sum_probs=37.1
Q ss_pred HHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEEEEec
Q 004263 594 LEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIEN 672 (765)
Q Consensus 594 L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~ 672 (765)
+.+.|+++||+-++.+.. .++.+.+....+ .+++ ...+.+|- -++.....++|++++-.
T Consensus 23 ~~~~g~~~iqlR~k~~~~---------~~~~~~~~~l~~---~~~~-~~~liin~-------~~~la~~~~~~gvHl~~ 81 (201)
T PRK07695 23 QIHSEVDYIHIREREKSA---------KELYEGVESLLK---KGVP-ASKLIIND-------RVDIALLLNIHRVQLGY 81 (201)
T ss_pred HHhCCCCEEEEcCCCCCH---------HHHHHHHHHHHH---hCCC-CCeEEEEC-------HHHHHHHcCCCEEEeCc
Confidence 567899999999888643 333333333222 1222 24577772 26677788999999974
No 263
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=20.30 E-value=9.5e+02 Score=25.31 Aligned_cols=144 Identities=16% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEE--
Q 004263 189 KEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF-- 266 (765)
Q Consensus 189 ~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~l-- 266 (765)
.++++.|.++|++.|.+==|. ..+.+.+.++..-....+. ....++-.--.++ +..++.....+ ++.+.+
T Consensus 23 ~~i~~~L~~~Gv~~iEvg~~~----~~~~~~~~~~~l~~~~~~~--~~~~l~r~~~~~v-~~a~~~~~~~~-~~~i~i~~ 94 (268)
T cd07940 23 LEIARQLDELGVDVIEAGFPA----ASPGDFEAVKRIAREVLNA--EICGLARAVKKDI-DAAAEALKPAK-VDRIHTFI 94 (268)
T ss_pred HHHHHHHHHcCCCEEEEeCCC----CCHHHHHHHHHHHHhCCCC--EEEEEccCCHhhH-HHHHHhCCCCC-CCEEEEEe
Q ss_pred -----------------EeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCC
Q 004263 267 -----------------DLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCS 329 (765)
Q Consensus 267 -----------------D~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~ 329 (765)
.+..-..-.+..++ .+..+.+|..|+-. .+++.+.+.++++.+ .|++.+++.-+.|
T Consensus 95 ~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~---~~~~~~~~~~~~~~~-~G~~~i~l~DT~G 167 (268)
T cd07940 95 ATSDIHLKYKLKKTREEVLERAVEAVEYAKS---HGLDVEFSAEDATR---TDLDFLIEVVEAAIE-AGATTINIPDTVG 167 (268)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---cCCeEEEeeecCCC---CCHHHHHHHHHHHHH-cCCCEEEECCCCC
Q ss_pred CcccccccccccCCcHHHHhHHHHHHHHH
Q 004263 330 LLHTAVDLENETKLDQEIKSWLAFAAQKV 358 (765)
Q Consensus 330 L~h~P~~~~~E~~l~~~~~~~lafA~qKl 358 (765)
.+ .|.++...++-.++++
T Consensus 168 ~~-----------~P~~v~~lv~~l~~~~ 185 (268)
T cd07940 168 YL-----------TPEEFGELIKKLKENV 185 (268)
T ss_pred CC-----------CHHHHHHHHHHHHHhC
No 264
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=20.16 E-value=1.1e+03 Score=25.45 Aligned_cols=108 Identities=13% Similarity=0.141 Sum_probs=67.8
Q ss_pred CceEeeechhHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHH
Q 004263 553 PMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFR 632 (765)
Q Consensus 553 ~vK~~ltGPvTll~~s~~~~~~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~ 632 (765)
.+..++=+|+-+= + .-+..+..+.=-..+.+++..+...|+..|-+.- ....+ .+.++-++...++++
T Consensus 61 ~~~i~vHApYlIN-l-----~s~~~e~~ekS~~~l~~e~~r~~~lG~~~lv~Hp-G~~~~-----~~~e~~l~~i~~~Ln 128 (280)
T COG0648 61 DVQLSVHAPYLIN-L-----ASPEKEKVEKSIERLIDEIDRCEQLGAKLLVFHP-GSYLG-----QGKEEGLNRIAEALN 128 (280)
T ss_pred CceEEeecceeec-C-----CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEECC-ccccC-----CCHHHHHHHHHHHHH
Confidence 4556666674331 1 1133466676678999999999999999888874 32221 235677888999999
Q ss_pred HHHccCCCCceEEEEe----------ccCChhHHHHHHHcCCccEEEEecCC
Q 004263 633 ITNCGVQDTTQVHTHM----------CYSNFNDIIHSIMDMDADVITIENSR 674 (765)
Q Consensus 633 ~~~~~v~~~~~I~~H~----------C~g~~~~i~~~l~~l~~D~isiE~~r 674 (765)
++... +. +.+.+-+ +|+++..+++.+.+.+-=++.||+..
T Consensus 129 ~~~~~-~~-v~i~~e~~agegs~~g~~F~~L~eii~~~~~~~~igvCiDtcH 178 (280)
T COG0648 129 ELLEE-EG-VIILLENTAGEGSGKGTQFGELAEIIDLIEEKERIGVCIDTCH 178 (280)
T ss_pred HHhhc-cC-CeEEEEEeccccCccccchhhHHHHHHhhcccCceEEEEEchh
Confidence 99875 32 3333222 23445566666666664467788543
Done!