Query 004263
Match_columns 765
No_of_seqs 398 out of 2096
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 19:33:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ppg_A 5-methyltetrahydroptero 100.0 5E-197 2E-201 1710.3 74.3 751 1-761 24-789 (789)
2 1t7l_A 5-methyltetrahydroptero 100.0 2E-183 8E-188 1587.8 67.0 727 2-762 34-765 (766)
3 1u1j_A 5-methyltetrahydroptero 100.0 3E-177 9E-182 1570.4 73.6 763 1-765 1-765 (765)
4 2nq5_A 5-methyltetrahydroptero 100.0 4E-176 1E-180 1554.7 65.1 741 1-763 4-747 (755)
5 3rpd_A Methionine synthase (B1 100.0 1.4E-76 4.6E-81 647.9 31.5 330 419-763 5-355 (357)
6 1ypx_A Putative vitamin-B12 in 100.0 3.5E-72 1.2E-76 619.1 24.9 331 428-762 3-369 (375)
7 1t7l_A 5-methyltetrahydroptero 100.0 5.4E-55 1.9E-59 509.2 27.2 314 2-356 438-759 (766)
8 3rpd_A Methionine synthase (B1 100.0 1.7E-49 5.7E-54 434.0 26.4 312 2-369 20-350 (357)
9 1u1j_A 5-methyltetrahydroptero 100.0 7.6E-48 2.6E-52 458.4 33.2 309 435-759 3-370 (765)
10 1ypx_A Putative vitamin-B12 in 100.0 7.8E-48 2.7E-52 424.9 24.5 318 2-370 9-366 (375)
11 2nq5_A 5-methyltetrahydroptero 100.0 5.7E-43 1.9E-47 415.1 29.9 314 432-758 3-360 (755)
12 3ppg_A 5-methyltetrahydroptero 100.0 1.8E-42 6.1E-47 405.7 29.6 312 2-369 465-786 (789)
13 2inf_A URO-D, UPD, uroporphyri 99.7 1.3E-15 4.6E-20 167.1 17.8 202 540-760 132-352 (359)
14 1j93_A UROD, uroporphyrinogen 99.6 5.4E-15 1.8E-19 161.9 13.8 199 540-756 131-350 (353)
15 3cyv_A URO-D, UPD, uroporphyri 99.5 6.6E-13 2.3E-17 145.3 18.3 205 540-761 125-352 (354)
16 1r3s_A URO-D, uroporphyrinogen 99.4 2.9E-12 9.9E-17 140.9 20.0 194 551-761 148-364 (367)
17 2eja_A URO-D, UPD, uroporphyri 99.4 4.9E-12 1.7E-16 137.5 17.5 198 541-757 119-335 (338)
18 4ay7_A Methylcobalamin\: coenz 99.3 2.9E-11 1E-15 131.9 19.9 190 551-757 147-346 (348)
19 4exq_A UPD, URO-D, uroporphyri 99.3 9.7E-11 3.3E-15 128.7 19.1 287 443-762 38-363 (368)
20 1j93_A UROD, uroporphyrinogen 99.0 2.3E-09 7.8E-14 117.1 14.9 183 136-331 129-333 (353)
21 2inf_A URO-D, UPD, uroporphyri 99.0 1.3E-08 4.5E-13 111.4 20.0 178 137-331 131-331 (359)
22 3cyv_A URO-D, UPD, uroporphyri 98.3 6.1E-06 2.1E-10 89.9 16.0 182 137-331 124-330 (354)
23 2eja_A URO-D, UPD, uroporphyri 98.3 2.1E-05 7.3E-10 85.0 18.8 178 137-330 117-316 (338)
24 1r3s_A URO-D, uroporphyrinogen 98.0 8.2E-05 2.8E-09 81.4 16.3 184 138-331 135-342 (367)
25 4exq_A UPD, URO-D, uroporphyri 97.4 0.0033 1.1E-07 68.6 17.5 173 149-331 149-340 (368)
26 4ay7_A Methylcobalamin\: coenz 97.3 0.0062 2.1E-07 65.9 18.3 173 149-331 148-328 (348)
27 1tx2_A DHPS, dihydropteroate s 93.0 1.6 5.5E-05 45.8 15.1 150 586-751 64-224 (297)
28 3cu2_A Ribulose-5-phosphate 3- 92.8 0.47 1.6E-05 48.3 10.2 80 587-685 28-115 (237)
29 1aj0_A DHPS, dihydropteroate s 92.6 3.3 0.00011 43.1 16.7 154 587-751 40-205 (282)
30 3inp_A D-ribulose-phosphate 3- 89.9 1.7 5.7E-05 44.5 10.8 97 586-695 41-139 (246)
31 1eye_A DHPS 1, dihydropteroate 89.7 8 0.00027 40.2 16.0 152 588-751 32-197 (280)
32 3ctl_A D-allulose-6-phosphate 88.7 1.2 4.1E-05 45.0 8.7 141 587-754 15-161 (231)
33 3ovp_A Ribulose-phosphate 3-ep 84.2 6.6 0.00022 39.5 11.3 97 586-695 18-117 (228)
34 4hb7_A Dihydropteroate synthas 83.7 29 0.001 35.6 15.9 145 589-750 34-189 (270)
35 1tqx_A D-ribulose-5-phosphate 83.5 4.4 0.00015 40.8 9.6 139 587-752 20-169 (227)
36 3nl6_A Thiamine biosynthetic b 82.6 3.4 0.00012 47.1 9.3 108 190-326 29-139 (540)
37 1tqj_A Ribulose-phosphate 3-ep 80.7 8.9 0.0003 38.4 10.8 97 587-697 19-119 (230)
38 2vp8_A Dihydropteroate synthas 80.7 28 0.00097 36.7 15.0 152 588-751 68-237 (318)
39 2y5s_A DHPS, dihydropteroate s 79.7 52 0.0018 34.2 16.5 150 589-750 50-213 (294)
40 3tr9_A Dihydropteroate synthas 78.7 37 0.0013 35.7 15.0 151 588-750 52-221 (314)
41 3o63_A Probable thiamine-phosp 78.2 27 0.00093 35.3 13.5 110 192-326 49-163 (243)
42 1h1y_A D-ribulose-5-phosphate 76.3 38 0.0013 33.5 13.9 97 587-697 21-120 (228)
43 2yci_X 5-methyltetrahydrofolat 72.9 35 0.0012 35.1 12.8 146 589-753 38-192 (271)
44 3mcm_A 2-amino-4-hydroxy-6-hyd 71.9 37 0.0013 37.4 13.4 154 588-753 215-388 (442)
45 2vef_A Dihydropteroate synthas 69.8 60 0.002 34.1 14.0 75 588-669 36-110 (314)
46 4dnh_A Uncharacterized protein 67.0 9.1 0.00031 40.2 6.6 105 180-289 131-253 (396)
47 3k13_A 5-methyltetrahydrofolat 66.6 76 0.0026 33.1 13.8 152 587-753 39-205 (300)
48 1ur4_A Galactanase; hydrolase, 66.5 1.5E+02 0.0051 32.1 18.8 148 575-757 131-310 (399)
49 3o63_A Probable thiamine-phosp 65.6 90 0.0031 31.4 13.9 108 593-731 51-163 (243)
50 1xi3_A Thiamine phosphate pyro 64.3 1E+02 0.0034 29.5 13.7 65 589-672 30-94 (215)
51 1f6y_A 5-methyltetrahydrofolat 62.6 1.3E+02 0.0044 30.6 14.5 148 587-753 27-183 (262)
52 2dqw_A Dihydropteroate synthas 61.9 1.1E+02 0.0038 31.7 14.0 148 589-750 56-216 (294)
53 1q7z_A 5-methyltetrahydrofolat 59.6 23 0.00079 40.4 9.0 136 182-330 122-275 (566)
54 1rpx_A Protein (ribulose-phosp 57.1 33 0.0011 33.8 8.7 72 588-673 26-100 (230)
55 3k2g_A Resiniferatoxin-binding 55.4 43 0.0015 35.9 9.9 92 642-736 204-308 (364)
56 2ob3_A Parathion hydrolase; me 54.6 71 0.0024 33.4 11.3 90 642-735 162-270 (330)
57 3gtx_A Organophosphorus hydrol 53.8 1.1E+02 0.0036 32.4 12.5 144 581-736 134-284 (339)
58 3rhg_A Putative phophotriester 53.1 1.8E+02 0.0062 30.9 14.3 146 182-331 140-298 (365)
59 1thf_D HISF protein; thermophI 52.7 85 0.0029 31.1 11.1 121 193-325 37-171 (253)
60 3rhg_A Putative phophotriester 52.5 1.4E+02 0.0049 31.8 13.4 94 641-737 193-299 (365)
61 2bmb_A Folic acid synthesis pr 52.0 2.1E+02 0.0071 32.4 14.9 76 589-669 253-336 (545)
62 3gtx_A Organophosphorus hydrol 51.0 75 0.0026 33.6 10.8 130 198-331 151-284 (339)
63 1ur4_A Galactanase; hydrolase, 49.4 2.1E+02 0.0072 30.9 14.2 125 176-330 131-268 (399)
64 3nl6_A Thiamine biosynthetic b 49.0 34 0.0012 38.8 8.1 64 590-672 30-93 (540)
65 3cu2_A Ribulose-5-phosphate 3- 49.0 50 0.0017 33.2 8.5 65 190-268 30-102 (237)
66 2h9a_B CO dehydrogenase/acetyl 48.9 2.5E+02 0.0086 29.2 15.5 149 586-753 75-230 (310)
67 1yad_A Regulatory protein TENI 48.2 2E+02 0.0067 27.8 13.5 105 591-732 35-139 (221)
68 1tqx_A D-ribulose-5-phosphate 47.9 64 0.0022 32.1 9.1 18 190-207 22-39 (227)
69 1ydn_A Hydroxymethylglutaryl-C 47.9 1.5E+02 0.005 30.4 12.3 147 588-753 29-196 (295)
70 1vzw_A Phosphoribosyl isomeras 45.9 60 0.002 32.1 8.6 67 592-672 39-105 (244)
71 1q7z_A 5-methyltetrahydrofolat 45.7 2.2E+02 0.0077 32.2 14.3 213 468-736 43-276 (566)
72 1yad_A Regulatory protein TENI 44.9 2.2E+02 0.0076 27.4 14.0 104 192-326 35-138 (221)
73 2fli_A Ribulose-phosphate 3-ep 44.8 92 0.0031 30.1 9.7 96 588-697 19-116 (220)
74 3ctl_A D-allulose-6-phosphate 44.1 1.3E+02 0.0044 29.9 10.7 138 189-366 16-162 (231)
75 2tps_A Protein (thiamin phosph 43.5 1.7E+02 0.006 28.1 11.6 107 190-326 35-144 (227)
76 1vzw_A Phosphoribosyl isomeras 43.5 49 0.0017 32.8 7.5 124 193-326 39-167 (244)
77 2ftp_A Hydroxymethylglutaryl-C 43.4 2.7E+02 0.0092 28.6 13.5 146 588-752 33-199 (302)
78 2v82_A 2-dehydro-3-deoxy-6-pho 43.2 1.5E+02 0.0052 28.4 11.0 86 588-696 22-107 (212)
79 1xi3_A Thiamine phosphate pyro 42.7 2.3E+02 0.0077 26.9 12.3 107 190-326 30-136 (215)
80 3tn4_A Phosphotriesterase; lac 42.7 66 0.0023 34.4 8.8 110 214-330 187-303 (360)
81 2y88_A Phosphoribosyl isomeras 42.5 32 0.0011 34.0 6.0 125 191-326 36-170 (244)
82 3l5l_A Xenobiotic reductase A; 40.6 1.7E+02 0.0058 31.1 11.6 96 575-671 149-266 (363)
83 3tqv_A Nicotinate-nucleotide p 38.9 72 0.0025 33.0 7.9 62 190-267 209-270 (287)
84 3hgj_A Chromate reductase; TIM 38.7 2.2E+02 0.0076 29.9 12.1 92 580-671 147-259 (349)
85 3ovg_A Amidohydrolase; structu 38.1 1.5E+02 0.005 31.7 10.6 105 624-736 168-278 (363)
86 3pnz_A Phosphotriesterase fami 37.9 2.8E+02 0.0096 29.0 12.7 106 624-737 167-277 (330)
87 1rpx_A Protein (ribulose-phosp 37.2 1.4E+02 0.0048 29.1 9.7 71 190-269 27-100 (230)
88 3l0g_A Nicotinate-nucleotide p 36.5 81 0.0028 32.8 7.9 63 190-268 218-280 (300)
89 1rd5_A Tryptophan synthase alp 36.1 3.3E+02 0.011 27.0 13.7 24 586-609 33-56 (262)
90 3gg7_A Uncharacterized metallo 35.7 1.4E+02 0.0049 30.0 9.6 64 309-385 178-242 (254)
91 3eol_A Isocitrate lyase; seatt 35.6 4.7E+02 0.016 28.5 16.7 160 586-760 161-368 (433)
92 1o4u_A Type II quinolic acid p 35.1 71 0.0024 33.0 7.2 65 191-268 205-269 (285)
93 1tqj_A Ribulose-phosphate 3-ep 34.9 1.6E+02 0.0054 29.0 9.7 67 190-269 21-94 (230)
94 1nvm_A HOA, 4-hydroxy-2-oxoval 34.8 4.2E+02 0.014 27.7 14.8 147 189-363 33-189 (345)
95 1qpo_A Quinolinate acid phosph 33.7 90 0.0031 32.2 7.7 65 190-267 205-269 (284)
96 1qo2_A Molecule: N-((5-phospho 33.6 1.1E+02 0.0038 30.1 8.3 119 191-326 35-165 (241)
97 3kru_A NADH:flavin oxidoreduct 33.6 2.4E+02 0.0082 29.7 11.3 91 580-671 138-249 (343)
98 3paj_A Nicotinate-nucleotide p 33.2 99 0.0034 32.5 8.0 62 190-267 242-303 (320)
99 3k2g_A Resiniferatoxin-binding 33.0 1.1E+02 0.0039 32.5 8.7 112 214-331 184-308 (364)
100 3gg7_A Uncharacterized metallo 32.6 3.9E+02 0.013 26.7 12.3 96 624-736 103-200 (254)
101 3rcm_A TATD family hydrolase; 31.7 2.4E+02 0.0082 28.8 10.7 98 624-737 113-214 (287)
102 3tn4_A Phosphotriesterase; lac 31.1 3.3E+02 0.011 28.9 11.9 90 641-734 206-302 (360)
103 3l0g_A Nicotinate-nucleotide p 30.5 76 0.0026 33.1 6.5 60 590-671 219-279 (300)
104 1z41_A YQJM, probable NADH-dep 30.4 3E+02 0.01 28.7 11.5 90 580-671 139-249 (338)
105 2ob3_A Parathion hydrolase; me 30.2 4.7E+02 0.016 26.9 14.1 122 201-330 130-270 (330)
106 3gr7_A NADPH dehydrogenase; fl 30.1 3.2E+02 0.011 28.6 11.6 87 580-671 139-249 (340)
107 3gnn_A Nicotinate-nucleotide p 29.0 92 0.0032 32.4 6.8 62 191-268 221-282 (298)
108 1rd5_A Tryptophan synthase alp 28.8 86 0.0029 31.5 6.6 78 187-266 33-124 (262)
109 1vyr_A Pentaerythritol tetrani 28.6 2.8E+02 0.0097 29.3 10.9 91 581-672 157-272 (364)
110 2r14_A Morphinone reductase; H 28.1 2.5E+02 0.0086 29.9 10.4 90 581-671 162-275 (377)
111 1ete_A FLT3 ligand; four-helix 28.1 35 0.0012 30.2 2.8 13 325-337 1-13 (134)
112 3vnd_A TSA, tryptophan synthas 27.9 1.5E+02 0.005 30.3 8.1 75 188-266 34-129 (267)
113 1icp_A OPR1, 12-oxophytodienoa 27.4 2.7E+02 0.0093 29.6 10.6 90 581-671 163-276 (376)
114 3i4e_A Isocitrate lyase; struc 27.3 6.4E+02 0.022 27.5 18.5 159 586-759 168-372 (439)
115 2ffi_A 2-pyrone-4,6-dicarboxyl 27.2 3E+02 0.01 27.2 10.5 135 190-332 96-241 (288)
116 4i6k_A Amidohydrolase family p 26.6 93 0.0032 31.7 6.5 204 112-333 27-254 (294)
117 2fli_A Ribulose-phosphate 3-ep 26.6 2.5E+02 0.0086 26.8 9.4 92 190-292 20-116 (220)
118 3t7v_A Methylornithine synthas 26.3 3.9E+02 0.013 27.6 11.5 130 193-335 101-247 (350)
119 3tqv_A Nicotinate-nucleotide p 26.2 1E+02 0.0035 31.9 6.5 59 591-671 211-270 (287)
120 2ffi_A 2-pyrone-4,6-dicarboxyl 26.2 4.8E+02 0.016 25.7 13.2 105 641-750 137-258 (288)
121 1h5y_A HISF; histidine biosynt 26.1 1.1E+02 0.0038 29.8 6.8 71 190-268 37-107 (253)
122 1vhc_A Putative KHG/KDPG aldol 26.0 4E+02 0.014 26.1 10.8 84 589-696 33-116 (224)
123 3iix_A Biotin synthetase, puta 25.8 5.5E+02 0.019 26.2 12.7 127 193-334 94-237 (348)
124 1thf_D HISF protein; thermophI 25.8 2.7E+02 0.0092 27.3 9.6 67 592-671 37-103 (253)
125 3ewb_X 2-isopropylmalate synth 25.7 5.1E+02 0.018 26.4 12.0 132 190-336 31-180 (293)
126 3lg3_A Isocitrate lyase; conse 25.2 6.9E+02 0.024 27.2 15.7 158 587-759 169-372 (435)
127 3ipw_A Hydrolase TATD family p 24.4 5.8E+02 0.02 26.5 12.2 100 620-736 149-251 (325)
128 3pnz_A Phosphotriesterase fami 24.2 3.6E+02 0.012 28.1 10.6 145 182-331 129-276 (330)
129 2gou_A Oxidoreductase, FMN-bin 24.1 3.5E+02 0.012 28.6 10.6 89 580-672 156-271 (365)
130 4djd_D C/Fe-SP, corrinoid/iron 24.0 6.3E+02 0.022 26.3 15.8 142 592-754 87-238 (323)
131 2hsa_B 12-oxophytodienoate red 23.3 2.7E+02 0.0092 30.0 9.6 27 580-606 166-192 (402)
132 1mxs_A KDPG aldolase; 2-keto-3 23.2 2.4E+02 0.0081 27.8 8.5 85 589-697 42-126 (225)
133 3paj_A Nicotinate-nucleotide p 23.2 1.2E+02 0.0041 31.8 6.5 56 594-671 247-303 (320)
134 4h3d_A 3-dehydroquinate dehydr 23.2 5.4E+02 0.018 25.7 11.3 125 590-732 37-180 (258)
135 3rcm_A TATD family hydrolase; 23.2 4.3E+02 0.015 26.9 10.7 23 310-332 192-214 (287)
136 3ayv_A Putative uncharacterize 22.6 3.1E+02 0.011 26.6 9.4 27 643-670 2-28 (254)
137 3noy_A 4-hydroxy-3-methylbut-2 22.2 5.7E+02 0.019 27.2 11.3 124 586-732 47-185 (366)
138 3iix_A Biotin synthetase, puta 21.9 6.4E+02 0.022 25.7 12.4 70 654-729 142-227 (348)
139 2yw3_A 4-hydroxy-2-oxoglutarat 21.6 5E+02 0.017 24.9 10.4 81 590-696 30-110 (207)
140 3rmj_A 2-isopropylmalate synth 21.5 3.5E+02 0.012 28.8 9.9 141 590-752 39-197 (370)
141 3ovg_A Amidohydrolase; structu 21.5 2.6E+02 0.0089 29.7 8.9 112 215-331 164-278 (363)
142 4dnh_A Uncharacterized protein 21.3 1.3E+02 0.0046 31.6 6.1 83 579-671 131-232 (396)
143 1qtw_A Endonuclease IV; DNA re 21.3 3.9E+02 0.013 26.1 9.9 90 179-270 82-182 (285)
144 1wbh_A KHG/KDPG aldolase; lyas 21.0 5E+02 0.017 25.1 10.3 84 589-696 32-115 (214)
145 3gnn_A Nicotinate-nucleotide p 20.9 1.7E+02 0.0058 30.4 6.9 56 594-671 225-281 (298)
146 2qjg_A Putative aldolase MJ040 20.9 6.1E+02 0.021 25.0 11.8 64 658-729 173-236 (273)
147 4ab4_A Xenobiotic reductase B; 20.7 4.9E+02 0.017 27.5 10.9 89 580-672 148-263 (362)
148 1h5y_A HISF; histidine biosynt 20.6 2E+02 0.0069 27.8 7.4 70 589-671 37-106 (253)
No 1
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A
Probab=100.00 E-value=4.5e-197 Score=1710.30 Aligned_cols=751 Identities=51% Similarity=0.837 Sum_probs=699.2
Q ss_pred CceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 004263 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (765)
Q Consensus 1 ~~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~ 80 (765)
|+||++||||||++||||+|+|+||+|++|+++|.++++++|+++|+.|+++|||+||+|||||||||||+++|||+||+
T Consensus 24 ~~~~~lg~prig~~relk~a~e~yw~g~~~~~eL~~~~~~lr~~~w~~q~~aGid~ip~~dFs~YD~vLd~~~~~g~ip~ 103 (789)
T 3ppg_A 24 VQSSVLGFPRIGGQRELKKITEAYWSGKATVEELLAKGKELREHNWKLQQKAGVDIIPSNDFSYYDQVLDLSLLFNAIPE 103 (789)
T ss_dssp CCEECSCCCCSCTTCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHTCSBCEESCCCSSCHHHHHHHHTTCCCG
T ss_pred HHHhhcCCCCcCCccHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEecCCCcchHHHHHHHHHhCCCch
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchhhhhhccCCC----------CCCcccceeecccCceeecceecCCCccccC---CccchHHHHHHHHc
Q 004263 81 RYSWNGGEIGFDVYFSMARGNA----------SVPAMEMTKWFDTNYHYIVPELGPDVNFSYA---SHKAVQEYKEAKAL 147 (765)
Q Consensus 81 rf~~~~~~~~l~~yFa~arG~~----------~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~---~~~~~~e~~~a~~~ 147 (765)
||+... ..+||+||+||||.. +++|+||||||||||||+||||.++++|+++ .++++++|++|+++
T Consensus 104 r~~~~~-~~~l~~yf~~arg~~~~~~~~~~~~~~~a~eMtKWFdTNYHYiVPE~~~~~~f~l~~~~~~k~~~e~~eAk~~ 182 (789)
T 3ppg_A 104 RYTKFD-LAPIDVLFAMGRGLQAAATATQAAVDVTALEMVKWFDSNYHYVRPTFSHSTEFKLNTAAGIKPVDEFNEAKAL 182 (789)
T ss_dssp GGGSSC-CCHHHHHHHHHHCEEECC-----CEEECCCCEEECTTSSCEEECCEECTTCCCCCCGGGCCHHHHHHHHHHHT
T ss_pred hhcccC-CCcHHHHHHHhcCCccccccccccCCcccccccccccCCCCeeceEECCCCCeeeccccchhHHHHHHHHHHc
Confidence 998542 347999999999965 5779999999999999999999999999999 89999999999999
Q ss_pred CCCCceEeehHHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHH
Q 004263 148 GMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYS 227 (765)
Q Consensus 148 g~~~K~vl~GP~T~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~ 227 (765)
|+.+||||+||+||++|||..++- .++++.+++++|+++|.++|++|.++||+|||||||+|++|+++++++++.++|+
T Consensus 183 G~~~kpVl~GPvT~L~L~k~~~~~-~~~~~~~lL~~Ll~~Y~~~l~~L~~~G~~wVQiDEP~Lv~dl~~~~~~~~~~aY~ 261 (789)
T 3ppg_A 183 GVQTRPVILGPVSYLYLGKADKDS-LDLEPISLLPKILPVYKELLQKLKEAGAEQVQIDEPVLVLDLPEAVQSKFKEAYD 261 (789)
T ss_dssp TCCCEEEEECHHHHHHTCEECGGG-TTCCGGGGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHHHHTHHHHHHH
T ss_pred CCCCCceeecHHHHHHHhcccccc-ccCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeeCCeeecCCCHHHHHHHHHHHH
Confidence 999999999999999999931210 0368889999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHH
Q 004263 228 ELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSL 307 (765)
Q Consensus 228 ~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~ 307 (765)
.|.+. ..++|+|+||||++ +++++.|.++| |+||||||++++++++.+.+.+|++|.|++|||||||+|++|+++++
T Consensus 262 ~L~~~-~~~kill~TYFg~~-~~~l~~l~~lp-V~gl~lDlv~~~~~l~~v~~~~~~~k~L~aGvVdGRNiWr~dl~~~l 338 (789)
T 3ppg_A 262 ALVGA-DVPELILTTYFGDV-RPNLKAIENLP-VAGFHFDFVRVPEQLDEVASILKDGQTLSAGVVDGRNIWKTDFAKAS 338 (789)
T ss_dssp HHCST-TSCEEEEECCSSCC-GGGHHHHTTCC-CSEEEEETTTCGGGHHHHHHTCCTTCEEEEEEECSSCCBCCCHHHHH
T ss_pred HHhhC-CCCCEEEECCCCCH-HHHHHHHHcCC-CcEEEEEccCCcchHHHHHhhcCCCCeEEEEEecCCccccCCHHHHH
Confidence 99763 35799999999999 89999999999 99999999998899999987899999999999999999999999999
Q ss_pred HHHHHHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHhh
Q 004263 308 TTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASR 387 (765)
Q Consensus 308 ~~l~~~~~~~~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~~~~~~~~~~~~~~~~~~~ 387 (765)
++|+++.+.+|.++|||+|||||+|||+|++.|++||+++|+|||||.|||.||++|++++++.+..+.+.+|.+++++|
T Consensus 339 ~~l~~l~~~lg~~~l~vspScSLlHvP~~l~~e~~l~~~~~~~lafa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~ 418 (789)
T 3ppg_A 339 AVVQKAIEKVGKDKVVVATSSSLLHTPVDLESETKLDAVIKDWFSFATQKLDEVVVIAKNVSGEDVSKQLEANAASIKAR 418 (789)
T ss_dssp HHHHHHHHHHCGGGEEEEESSCGGGSCSCGGGCSSSCHHHHTTBCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCCCcccccccCCCHHHHhhcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 99999999899899999999999999999999999999999999999999999999999997655667899999999999
Q ss_pred hcCCCCCCHHHHhHHhhCcCCCCcCCCChHHHHHHHHhhcCCCCccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHH
Q 004263 388 KSSPRVTNEAVQKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTI 467 (765)
Q Consensus 388 ~~~~~~~~~~v~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~ 467 (765)
+.|++++|++||+|+++|+++|++|.+||++|+++|+++|+||+||||||||||||++|++||++|.+|+||.++|++++
T Consensus 419 ~~~~~~~~~~v~~r~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~~ptt~VGSfPRp~~L~~aR~~~~~G~is~~el~~~~ 498 (789)
T 3ppg_A 419 SESSITNDPKVQERLTTINEALATRKAAFPERLTEQKAKYNLPLFPTTTIGSFPQTKDIRINRNKFAKGQITAEEYEAFI 498 (789)
T ss_dssp HTCSSSCCHHHHHHHHTCCTGGGSCSSCHHHHHHHHHHHHCCCSSCBBCCSCCCCCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred hcccccCCHHHHHHHHhCCHhhhccCCchHHHHHHHHHhcCCCCceeccccCcCCCHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeEEeccceeeecCCceeeCcEEEccCCCCcccchhHHHHHH
Q 004263 468 KEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQ 547 (765)
Q Consensus 468 ~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~~~g~~~~~~t~~~~~P~i~g~i~~~~p~~~~~~~~a~ 547 (765)
+++|+++|+.|+++|||+||||||+|+|||+||+++|+||.++.+||||+||++|++||+|+|+|++++||+++|++|+|
T Consensus 499 ~~aI~~vV~~Qe~~GLdvvtDGE~~R~d~v~~F~e~L~G~~~~~~g~vq~~g~r~~~~p~i~G~V~~~~p~~v~~~~~~q 578 (789)
T 3ppg_A 499 NKEIETVVRFQEEIGLDVLVHGEPERNDMVQYFGEQLNGFAFTTNGWVQSYGSRYVRPPIIVGDVSRPKAMTVKESVYAQ 578 (789)
T ss_dssp HHHHHHHHHHHHHHTCSBBCCCCTTCSCTTHHHHTTSEEEECCSSCCEEEETTEEECCCEEEEEEECCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeeeCCCccchhHHHHHHHhCCCeeEecCcceEecCCccccCCeeeccCCCCCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCceEeeechhHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCC-CCHHHHHHH
Q 004263 548 SMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRK-SEQDFYLKW 626 (765)
Q Consensus 548 ~~t~~~vK~~ltGPvTll~~s~~~~~~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~-~~~~~~l~~ 626 (765)
++|++|+|+|||||+||+.|++.+++.++++++.|||.+|++|+++|+++||++||||||++++++|++. .+++++++|
T Consensus 579 s~t~~pvK~~L~gP~ti~~~s~~r~~~~~ee~~~dlA~A~r~Ei~~L~~AG~r~IQiDEPal~e~l~~r~g~d~~~~l~~ 658 (789)
T 3ppg_A 579 SITSKPMKGMLTGPVTILRWSFPRDDVSGKIQALQLGLALRDEVNDLEGAGITVIQVDEPAIREGLPLRAGKERSDYLNW 658 (789)
T ss_dssp HTCSSCBEEEEECHHHHHHTSBCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTGGGSCSSSSHHHHHHHHH
T ss_pred hhccCCCceeccchHhHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhhcccccccCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874 678999999
Q ss_pred HHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEEEEe-cCCCChhhHHHhhhcccCCceeccccccCCCCCC
Q 004263 627 AVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIE-NSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRI 705 (765)
Q Consensus 627 ~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE-~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~v 705 (765)
+++++|.++++++++++||+|||||||+. +.|.++++|+|+|| ++|+++++|+.|++ +++.|++||||+|++++
T Consensus 659 av~a~n~a~~g~p~d~~I~tHiC~Gnf~~--~~I~~l~aD~islE~~~Rs~~e~L~~~~~---~~k~V~lGVvds~sp~v 733 (789)
T 3ppg_A 659 AAQSFRVATSGVENSTQIHSHFCYSDLDP--NHIKALDADVVSIEFSKKDDPNYIQEFSE---YPNHIGLGLFDIHSPRI 733 (789)
T ss_dssp HHHHHHHHHSSSCTTSEEEEECC---CCH--HHHHHHCCSEEEEC---------CGGGGG---CCSEEEEC-------CC
T ss_pred HHHHHHHHHhcCCCCcEEEEeccCCCCCh--hHHHhCCCCEEEEecCCCcchHHHHHHHh---cCCeEEeeeecCCCCCC
Confidence 99999999999998999999999999987 99999999999999 88888899998886 47899999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 004263 706 PSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQL 761 (765)
Q Consensus 706 e~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r~~~ 761 (765)
|++|+|+++|+++++++|++++||||||||++++|+++++||++||+||+.+|+++
T Consensus 734 Es~EeV~~rI~~a~~~v~~erL~lsPdCGl~t~~~~~a~akL~~mveaAk~lR~~~ 789 (789)
T 3ppg_A 734 PSKQEFVSRIEEILKVYPASKFWVNPDCGLKTRGWPEVKESLTNMVEAAKEFRAKY 789 (789)
T ss_dssp CCHHHHHHHHHHHTTTSCGGGEEECCSCC---CCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999864
No 2
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A*
Probab=100.00 E-value=2.2e-183 Score=1587.82 Aligned_cols=727 Identities=43% Similarity=0.757 Sum_probs=685.7
Q ss_pred ceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 004263 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (765)
Q Consensus 2 ~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~r 81 (765)
+||++||||||++||||+|+|+||+|++|+++|.++++++|.++|+.|++ |||+||+|||||||||||+++|||+||+|
T Consensus 34 ~~~~~g~prig~~relk~a~e~yw~g~~~~~~l~~~~~~lr~~~~~~q~~-g~~~i~~~dfs~yd~vld~~~~~g~~p~r 112 (766)
T 1t7l_A 34 KAYAFGFPKIGEKREFKKALEDFWKGKITEEQFEEEMNKLRMYMVENYRK-NVDVIPSNELSYYDFVLDTAVMVGAVPER 112 (766)
T ss_dssp EECCCCCCSSCTTCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH-HCSSCEESCCCSSCHHHHHHHHTTCCCGG
T ss_pred HhhccCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHc-CCCeeccCCCcchhHHHhHHHHhCCCchh
Confidence 48899999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred ccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHcCCCCceEeehHHHH
Q 004263 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSY 161 (765)
Q Consensus 82 f~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T~ 161 (765)
|+.. .+||+||+||||. +|++|||||||||||+|||++ ++.|++++++++++|++|+++|+++||||+||+||
T Consensus 113 ~~~~---~~l~~yf~~arg~---~a~em~kwf~tnyhy~vpe~~-~~~f~~~~~~~~~~~~ea~~~g~~~~pvl~gp~t~ 185 (766)
T 1t7l_A 113 FGEY---RGLSTYFDMARGG---KALEMTKFFNTNYHYLVPEIE-TEEFYLLENKPLEDYLFFKSKGIETAPWVIGPFTF 185 (766)
T ss_dssp GCSC---CSHHHHHHHHSST---TCCEEEECTTSSCEEEECBCC-CSCCCCSCCHHHHHHHHHHTTTCCCEEEEECHHHH
T ss_pred hccc---cchHHHHHHHcCC---cchhhhhhhcCCCCeEeeeec-CceeccCcchHHHHHHHHHhcCCCCeeEEEChHHH
Confidence 9743 2499999999994 799999999999999999999 89999999999999999999999999999999999
Q ss_pred hhhccCCCCc---CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcE
Q 004263 162 LLLSKPAKGV---EKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNV 238 (765)
Q Consensus 162 l~l~~~~~~y---~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i 238 (765)
|+|||. ++| ..+ +..+++++|+++|.++|++|.++||+|||||||+|++|++++|.+++..+|..|. .++|
T Consensus 186 l~l~k~-~~~~~~~~~-~~~~~l~~l~~~y~~~l~~l~~~g~~~vq~dep~l~~d~~~~~~~~~~~~y~~l~----~~~~ 259 (766)
T 1t7l_A 186 LYLSKR-NGEWIRRPN-QMEKLLESLVSVYKEVFEKLVENGCKEILVNEPAFVCDLEKAHWDLILNVYRELS----EFPL 259 (766)
T ss_dssp HHTCEE-TTEECCSHH-HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEECGGGGSCCBHHHHHHHHHHHHTTT----TSCE
T ss_pred HHHhcc-CCccccccc-hHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCCeeecCCCHHHHHHHHHHHHHhc----CCcE
Confidence 999994 443 100 1238999999999999999999999999999999999999999999999999993 3699
Q ss_pred EEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhh-hCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhc
Q 004263 239 LIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKT-EFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTV 317 (765)
Q Consensus 239 ~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~-~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~ 317 (765)
+|+||||++ + +++.+.++| |+|||+||++++++++.+.+ .||++|.|++|||||||||++|+++++++++++.+
T Consensus 260 ~~~tyf~~~-~-~~~~~~~l~-v~~~~~d~v~~~~~~~~~~~~~~~~~~~l~~Gvvdgrniw~~d~~~~~~~~~~~~~-- 334 (766)
T 1t7l_A 260 TVFTYYDSV-S-DYEACVSLP-VKRLHFDFVSNEENLKNLEKHGFPEDKKLVAGVINGRQPWKVDLRKVASLVEKLGA-- 334 (766)
T ss_dssp EEECCSSCC-S-CHHHHHTSS-CSEEEEECSSCSHHHHHHHHHCCCTTSEEEEEEECSSCCBCCCHHHHHHHHHHHTC--
T ss_pred EEECCcCCH-H-HHHHHHcCC-CcEEEEEecCCHHHHHHHHhccCCCCceEEEEEecCcchhhcCHHHHHHHHHHhhe--
Confidence 999999999 7 999999999 99999999999888999987 69999999999999999999999999999998753
Q ss_pred CCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHhhhcCCCCCCHH
Q 004263 318 GKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEA 397 (765)
Q Consensus 318 ~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (765)
|||+|||||+|||+|++.|++||+++|+|||||.|||+||+.|++++++.. +.+ |.+++++|+ +|++
T Consensus 335 ----~~~~~s~sllh~p~~~~~e~~l~~~~~~~lafa~~k~~e~~~l~~~~~~~~--~~~--~~~~~~~~~-----~~~~ 401 (766)
T 1t7l_A 335 ----SAISNSCPLFHLPVTLELENNLPGGLKEKLAFAKEKLEELKMLKDFLEGKT--FDL--PNVSFEDFA-----VDLQ 401 (766)
T ss_dssp ----SEEEESSCGGGSCSCSTTCCSSSTTTGGGBCCHHHHHHHHHHHHHHHTTSC--CCC--CCCCCTTTT-----CCHH
T ss_pred ----EEEECCcCCeeccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--HHH--HHHHHHHhh-----cCHH
Confidence 999999999999999999999999999999999999999999999997532 122 555555555 8999
Q ss_pred HHhHHhhCcCCCCcCCCChHHHHHHHHhhcCCCCccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 004263 398 VQKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKL 477 (765)
Q Consensus 398 v~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~ 477 (765)
||+|+++|++++++|++||++|+++|+++|+||+||||||||||||+|||+||++||+|+||.++|+++++++|+++|+.
T Consensus 402 v~~r~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~~pTt~IGSfPrp~ELK~Are~y~~G~Is~eeL~~~~~~~i~~~V~~ 481 (766)
T 1t7l_A 402 AVERVRNLPEDSFRREKEYTERDRIQRERLNLPLFPTTTIGSFPQTPEVRKMRSKYRKGEISKEEYEAFIKEQIKKAIEL 481 (766)
T ss_dssp HHHHHHTCCGGGTSCSSCHHHHHHHHHHHHCCCSSCBCCCSCCCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHhhcccCCchHHHHHHHHHhcCCCCcceeeeCcCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcccCCCCccchhHHHHHhccCCeEEeccceeeecCCceeeCcEEEccCCCCcccchhHHHHHHhccCCCceEe
Q 004263 478 QEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGM 557 (765)
Q Consensus 478 Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~~~g~~~~~~t~~~~~P~i~g~i~~~~p~~~~~~~~a~~~t~~~vK~~ 557 (765)
|+++|||+||||||+|+|||+||++.|+||.++.+||+++||++||+||++.|+++++.||+++|++++++++.+|+|++
T Consensus 482 QeeaGLDvItdGEFsR~D~Vldf~~~L~Gi~~~~~g~~~~~~~~~~~~pi~~G~i~ra~pMtlde~~~Aksl~~~pvK~~ 561 (766)
T 1t7l_A 482 QEEIGLDVLVHGEFERTDMVEFFAEKLNGIATTQNGWVLSYGSRCYRPPIIYGTVTRPEPMTLKEITYAQSLTEKPVKGM 561 (766)
T ss_dssp HHHHTCSSBCCCCTTCSSHHHHHHTTSEEEECCSSCCEEEETTEEECCCEEEEEEECCSCSSHHHHHHHHHTCSSCBEEE
T ss_pred HHHcCCCccCCCCcchhhHHHHHHHHhCCccccccccccccccccccCceeecCCccCCcChHHHHHHHHHhcCCCeEEE
Confidence 99999999999999999999999999999998888999999999999999999998899999999999999988999999
Q ss_pred eechhHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHcc
Q 004263 558 LTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCG 637 (765)
Q Consensus 558 ltGPvTll~~s~~~~~~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~ 637 (765)
||||+|++.|++.+++.++++++++|+.+|++++++|+++||++||||||+|+++++.++.++.++++++++++|.+ ++
T Consensus 562 LtGPvTlL~ls~~r~d~~r~ell~dLA~ayreeI~~L~~AGa~~IQIDEPaL~~~L~~~~~d~~~~l~~a~~aln~a-~g 640 (766)
T 1t7l_A 562 LTGPVTIMSWSYYREDIPEREIAYQIALAINEEVKDLEEAGIKIVQIDEPAFREKAPIKKSKWPEYFEWAINAFNLA-AN 640 (766)
T ss_dssp EECHHHHHHTSEECSSSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTHHHHTSCSSGGGHHHHHHHHHHHHHHH-TC
T ss_pred EeCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcccccCCCcchhHHHHHHHHHHHHHHh-hc
Confidence 99999999999988888999999999999999999999999999999999999999887777889999999999999 99
Q ss_pred CCCCceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHHhhhcc-cCCceeccccccCCCCCCCCHHHHHHHHH
Q 004263 638 VQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGV-KYRAGIGPGVYDIHSPRIPSTEEIADRIN 716 (765)
Q Consensus 638 v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~-~~~~~l~~GVvd~~s~~ve~~eev~~~i~ 716 (765)
++.+++|++|||||+++++++.|.++++|+|+||++|++++++..+++ + ++++.|++||||+||+|+|++++++++|+
T Consensus 641 v~~~~~I~lH~C~G~~~di~~~L~~l~VD~IsLE~~Rs~~elL~~l~~-~p~~~k~L~lGVVD~rn~~ved~EeI~~rI~ 719 (766)
T 1t7l_A 641 ARPETQIHAHMCYSDFNEIIEYIHQLEFDVISIEASRSKGEIISAFEN-FKGWIKQIGVGVWDIHSPAVPSINEMREIVE 719 (766)
T ss_dssp CCTTSEEEEECCCSCCTTTHHHHTTSCCSEEEEECTTTTTGGGHHHHT-STTCCSEEEEECSCTTSCSCCCHHHHHHHHH
T ss_pred CCCCceEEEEEecCchHHHHHHHHcCCCCEEEEecCCCchhHHHHHHh-ccccCCeEEEEEECCCCCCCCCHHHHHHHHH
Confidence 987899999999999999999999999999999988888888888775 3 35689999999999999999999999999
Q ss_pred HHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 004263 717 KMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLA 762 (765)
Q Consensus 717 ~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r~~~~ 762 (765)
++++++|.+++||||||||+|+++++++++|++|+++|+.+|+++.
T Consensus 720 ~a~~~Vg~erL~VsPdCGL~~~p~~e~~~kLk~mvaaAkevr~e~~ 765 (766)
T 1t7l_A 720 RVLRVLPKELIWINPDCGLKTRNWDEVIPSLRNMVALAKEMREKFE 765 (766)
T ss_dssp HHTTTSCGGGEEEECSSCCTTSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999764
No 3
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A*
Probab=100.00 E-value=2.6e-177 Score=1570.43 Aligned_cols=763 Identities=86% Similarity=1.311 Sum_probs=704.7
Q ss_pred CceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 004263 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (765)
Q Consensus 1 ~~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~ 80 (765)
|.||++||||||++||||+|+|+||+|+||+++|+++++++|+++|+.|+++|||+||||||||||||||++++||+||+
T Consensus 1 ~~~~~~g~PR~g~~reLk~a~e~~~~g~i~~~~L~~~~~~~~~~~~~~Q~~aGld~i~~gdfs~yd~vld~~~~l~~ip~ 80 (765)
T 1u1j_A 1 MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNTFAHYDQVLDTTAMLGAVPP 80 (765)
T ss_dssp -CBBCSCCCCSCTTCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTTCSBCEESCCCSSCHHHHHHHHTTCCCG
T ss_pred CCcceecCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeccCCcccchHHHHHHHHhCCcCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHcCCCCceEeehHHH
Q 004263 81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVS 160 (765)
Q Consensus 81 rf~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T 160 (765)
||....+..++++||+|+||..++++++|||||||||||+|||++++++|++++++++++|++|+++|+++||+|+||+|
T Consensus 81 r~~~~~~~~~~~~yf~~arG~~~~~a~emtkwfdtNyhy~vPe~~~~~~~~~~~~~~l~~~~~ak~~g~~~K~~l~GP~T 160 (765)
T 1u1j_A 81 RYGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVS 160 (765)
T ss_dssp GGCCCSSSCCHHHHHHHHHCCSSSCCCCEEECTTSSCEEECCEECTTCCCCCCCCHHHHHHHHHHHTTCCCEEEEECHHH
T ss_pred ceeccccCccHHHHHHHhCCCccccchhhheecccCcCceeeEEcCCcccccCCcchHHHHHHHHhcCCCceEEECCHHH
Confidence 99743233358999999999645789999999999999999999999999988899999999999999999999999999
Q ss_pred HhhhccCC-CCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEE
Q 004263 161 YLLLSKPA-KGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVL 239 (765)
Q Consensus 161 ~l~l~~~~-~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~ 239 (765)
|++|++.. +.|+ .+++.+++++|+++|++++++|+++||+|||||||+|+.++++++.+++..+|+.+.+..+..+++
T Consensus 161 ll~l~k~~~~~~~-~~~~~~ll~~L~~~y~~~l~~L~~aG~~~VQiDEP~L~~~l~~~~~~~~~~a~~~l~~~~~~~~i~ 239 (765)
T 1u1j_A 161 YLLLSKAAKGVDK-SFELLSLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVL 239 (765)
T ss_dssp HHHTCEECTTCCT-TCCGGGGHHHHHHHHHHHHHHHHHTTCCEEEEECGGGGSCCCHHHHHHHHHHHHHSTTTTCSSEEE
T ss_pred HHHhhhcccccCc-cCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCccccCCCHHHHHHHHHHHHHHHhhcCCCeEE
Confidence 99998732 3341 146789999999999999999999999999999999999998889999999999996532246899
Q ss_pred EEeccCCCch-hhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcC
Q 004263 240 IETYFADVPA-ETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVG 318 (765)
Q Consensus 240 l~tyfg~~~~-~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~ 318 (765)
||||||++ + ++++.|.++|+||+||||+++++++++.+...+|++|.|++|||||||+|++|+++++++|+++.+.+|
T Consensus 240 lhtc~G~~-~~~~~~~l~~l~~vd~l~lD~v~~~~~l~~l~~~l~~~k~L~lGvVdgrni~~~d~e~v~~~l~~~~~~lg 318 (765)
T 1u1j_A 240 VETYFADI-PAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVG 318 (765)
T ss_dssp EECCSSCC-CHHHHHHHTTCTTCCEEEEESSSCTTHHHHHHHCCCSSCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHCC
T ss_pred EEeCCCCc-chHHHHHHHcCCCCcEEEEEecCCcccHHHHHHhcCCCCEEEEEeeCCcccCCCCHHHHHHHHHHHHHhcC
Confidence 99999999 8 899999999889999999999778899888668889999999999999999999999999999999999
Q ss_pred CCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHhhhcCCCCCCHHH
Q 004263 319 KDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAV 398 (765)
Q Consensus 319 ~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 398 (765)
.+||||+|||||+|||+|+..|++|++++++|||||.|||+||+.|++++.+....+.+.+|.+++++|+.|+++||++|
T Consensus 319 ~~~l~lspsCgL~hvP~~~~~e~~l~~~~~~~~~fa~~Kl~el~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 398 (765)
T 1u1j_A 319 KDKLVVSTSCSLLHTAVDLINETKLDDEIKSWMAFAAQKVVEVNALAKALAGQKDEALFSANAAALASRRSSPRVTNEGV 398 (765)
T ss_dssp SSCEEEEESSCGGGSCSCGGGCCSSCHHHHTTBCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHCTTTSCTHH
T ss_pred CCcEEEcCCCCccCCccccccccCCCHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCcccCCHHH
Confidence 89999999999999999999999999999999999999999999999999864325678999999999999999999999
Q ss_pred HhHHhhCcCCCCcCCCChHHHHHHHHhhcCCCCccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 004263 399 QKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQ 478 (765)
Q Consensus 399 ~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q 478 (765)
|+|+++|++.+++|++||++|+++|+++|+||+||||||||||||++|+++|++|.+|+||.++|+++++++|+++|+.|
T Consensus 399 ~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~l~~~~tt~vGSfprp~~l~~ar~~~~~g~i~~~~~~~~~~~~i~~~V~~Q 478 (765)
T 1u1j_A 399 QKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKVSEEDYVKAIKEEIKKVVDLQ 478 (765)
T ss_dssp HHTTTTTSSCCCCCSSCGGGTHHHHHHHSCCCSSCBBCCSBCCCCSCCC-------------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCChhhcccCCchHHHHHHHHHhcCCCCCccCccCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcccCCCCccchhHHHHHhccCCeEEeccceeeecCCceeeCcEEEccCCCCcccchhHHHHHHhccCCCceEee
Q 004263 479 EELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGML 558 (765)
Q Consensus 479 ~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~~~g~~~~~~t~~~~~P~i~g~i~~~~p~~~~~~~~a~~~t~~~vK~~l 558 (765)
+++||||||||||+|+|||+||+++|+||.++.+||+|+||++|+++|+|+|+|+++.|++++|++|+|+++++|||++|
T Consensus 479 ~~~GldvvtdGE~~R~~~~~~f~~~l~G~~~~~~g~~~~~~~~~~~~p~i~g~i~~~~p~~ve~~~~l~~~~~~pvK~~l 558 (765)
T 1u1j_A 479 EELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMKGML 558 (765)
T ss_dssp HSSCCSBBCCBCTTCSCTTHHHHTTSTTEECCSSCCEEEETTEEECCCEECSCCCCCSCSSTHHHHHHTTSCSSCBEEEE
T ss_pred HHhCCCeeecchhccccHHHHHHHHhCCCccccCCcccccccccCcCCeeecCcCCCCCCHHHHHHHHHHHhcCCeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccC
Q 004263 559 TGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGV 638 (765)
Q Consensus 559 tGPvTll~~s~~~~~~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v 638 (765)
|||+|++.|++.+++.+++++++++|.++++++++|+++||++||||||++++++++++.++++|++|+++++|.+++++
T Consensus 559 ~GP~Tl~~~~~~r~~~~~~~l~~~lA~a~~~ev~~L~~aG~~~IQiDEP~l~~~l~~~~~~~~~~~~~av~~~~~~~~~v 638 (765)
T 1u1j_A 559 TGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGV 638 (765)
T ss_dssp ECHHHHHHTSEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSSTTCCSSGGGHHHHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHhccCcCcHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcccccccccCCCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999998889999999999999999999999999999999999999999998899999999999999999999
Q ss_pred CCCceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHH
Q 004263 639 QDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKM 718 (765)
Q Consensus 639 ~~~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a 718 (765)
+.+++||+|||||+|+++++.|.++++|+|+||++|++++.|+.|.+.+++++.|++||||+|++.+|++|+|+++|+++
T Consensus 639 ~~~~~i~~HiC~G~~~~i~~~l~~~~~D~islE~~rs~~e~L~~~~~~~~~~~~v~lGvvd~~s~~ve~~eev~~ri~~a 718 (765)
T 1u1j_A 639 QDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRVNKM 718 (765)
T ss_dssp CSSSEEEEECSCSCCTTTHHHHHTTCCSEEECCBSSSCTTGGGGGTTTTCCCSEECCBSSCTTSSSCCTHHHHHHHHHHH
T ss_pred CCCCeEEEEeccCCcHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHhhccCCCeEEEeecCCccCCCCCHHHHHHHHHHH
Confidence 88899999999999999999999999999999988888999998863013578999999999999999999999999999
Q ss_pred HhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhcC
Q 004263 719 LAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLASAK 765 (765)
Q Consensus 719 ~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r~~~~~~~ 765 (765)
++++|.+++||||||||++++|+++++||++|+++|+.+|+++..+|
T Consensus 719 ~~~v~~e~l~lsPdCGl~t~t~~e~~~kL~~mveaA~~vr~~~~~~~ 765 (765)
T 1u1j_A 719 LAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQLASAK 765 (765)
T ss_dssp HHSSCSTTBCBBCSSCSSSSCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHhcCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999887654
No 4
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A
Probab=100.00 E-value=4.1e-176 Score=1554.72 Aligned_cols=741 Identities=45% Similarity=0.767 Sum_probs=668.4
Q ss_pred CceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 004263 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (765)
Q Consensus 1 ~~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~ 80 (765)
+++|++||||||++||||+|+|+||+|+||+++|+++++++|+++|+.|+++|||+||+|||||||||||+++|||+||+
T Consensus 4 ~~~~~lgyPRig~~relk~a~e~yw~g~i~~~~L~~~~~~~r~~~~~~q~~aGid~i~~gdfs~yD~vl~~~~~~~~~p~ 83 (755)
T 2nq5_A 4 TKVSSLGYPRLGENREWKKLIEAYWAGKVSKNDLFAGAKELRLDFLKKQLNAGLDLIPVGDFSLYDHILDLSVQFNIIPK 83 (755)
T ss_dssp CEEBCSCCCSSCTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHTTCSBEEESCCCSSCHHHHHHHHTTCCCG
T ss_pred cccceecCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccCCccchHHHHHHHHHhCCCch
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchhhhhhccCC-CCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHH-HcCCCCceEeehH
Q 004263 81 RYSWNGGEIGFDVYFSMARGN-ASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAK-ALGMETVPVLVGP 158 (765)
Q Consensus 81 rf~~~~~~~~l~~yFa~arG~-~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~-~~g~~~K~vl~GP 158 (765)
||+.. ..++++||+||||. .++ +++|||||||||||+|||+++ ++|+++.++++++|++|+ ++|+++||+|+||
T Consensus 84 r~~~~--~~~l~~yFa~aRG~~~~~-a~emtkwfdtNyhY~vPe~~~-~~~~~~~~~~l~~~~eA~~~~g~~vK~vl~GP 159 (755)
T 2nq5_A 84 RFAKE--PIDIDLYFAIARGNKENV-ASSMKKWFNTNYHYIVPEWSK-QRPKLNNNRLLDLYLEAREVVGDKAKPVITGP 159 (755)
T ss_dssp GGTTS--CSSHHHHHHHHHCCSSSC-CCCEEECTTSSCEEECCBCCS-CCCCCCCCHHHHHHHHHHHHHGGGEEEEEECH
T ss_pred hhccc--cccHHHHHHHHhCCCCCC-cccceeeccCCCceeeeeeeC-ceeeecCchHHHHHHHHHHhcCCCcEEEEccH
Confidence 99743 24699999999996 355 899999999999999999999 899999999999999999 7899999999999
Q ss_pred HHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcE
Q 004263 159 VSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNV 238 (765)
Q Consensus 159 ~T~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i 238 (765)
+||++|++. + + +..+++++|+++|.+++++|.++||+|||||||+|+.++++++.+++..+|+.+.+.....++
T Consensus 160 ~Tla~l~k~-~----~-~~~dll~~L~~~y~~~l~~L~~~Ga~~VQiDEP~L~~dl~~~~~~~~~~ay~~l~~~~~~~~v 233 (755)
T 2nq5_A 160 ITYVALSTG-V----E-DFTAAVKSLLPLYKQVFTELVKAGASYIQVDEPIFVTDEGKDYLQAAKAVYAYFAKEVPDAKF 233 (755)
T ss_dssp HHHHHTCBS-C----S-CHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECGGGGSSGGGGGHHHHHHHHHHHHHHSTTCEE
T ss_pred HHHHHHhcC-C----c-HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccCCCCHHHHHHHHHHHHHHHhcccCCcE
Confidence 999999984 2 1 355999999999999999999999999999999999999888999999999999642113589
Q ss_pred EEEeccCCCchhhHHHHhcCCCccEEEEEeccCC-CChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhc
Q 004263 239 LIETYFADVPAETYKILTSLKGVTGFGFDLIRGT-KTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTV 317 (765)
Q Consensus 239 ~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~-~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~ 317 (765)
+|+||||++ . +++.|.++| ||+||+|+++++ ++++.+.+.+|.+|.|++|||||||+|++|+++++++++++.+.
T Consensus 234 ~lhtyfG~~-~-~~~~l~~l~-vd~l~lD~v~~~~~~l~~l~~~~~~~k~L~~GvVdgrniw~~d~e~v~~~l~~~~~~- 309 (755)
T 2nq5_A 234 IFQTYFEGL-I-DSQVLSQLP-VDAFGLDFVYGLEENLEAIKTGAFKGKEIFAGVIDGRNIWSSDFVKTSALLETIEEQ- 309 (755)
T ss_dssp EEECCSSCC-T-THHHHTTSS-CSEEEEESSSSHHHHHHHHHTTTTTTSEEEEEEECTTSCBCCCHHHHHHHHHHHHHT-
T ss_pred EEEEeCCCh-H-HHHHHHhCC-CCEEEEEecCCChhhHHHHHHhcCCCCEEEEEeeCCcccCCCCHHHHHHHHHHHHhh-
Confidence 999999999 6 899999999 999999999987 78888887688899999999999999999999999999999876
Q ss_pred CCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHhhhcCCCCCCHH
Q 004263 318 GKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEA 397 (765)
Q Consensus 318 ~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (765)
.+++||+|||||+|+|++++.|++||+++|+|||||.|||.||++|+++|++.. .+.+.+|.+++++|+.|++ ||+
T Consensus 310 -~~~l~vsPsCsL~h~P~~l~~e~~~~~~~~~~~~fa~~k~~e~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~- 385 (755)
T 2nq5_A 310 -SAALTIQPSCSLLHVPVTTKNETDLDPVLRNGLAFADEKLTEVKRLAEHLDGRE-DPAYDLHIAHFDALQAADF-RNV- 385 (755)
T ss_dssp -SSEEEEEESSCGGGSCSCSTTCTTSCHHHHTTBCCHHHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTCGG-GSC-
T ss_pred -cCCEEEcCCCCcCCCCHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHhccCcc-cCH-
Confidence 589999999999999999999999999999999999999999999999998643 4568999999999999999 887
Q ss_pred HHhHHhhCcCCCCcCCCChHHHHHHHHhhcCCCCccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 004263 398 VQKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKL 477 (765)
Q Consensus 398 v~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~ 477 (765)
|+++|++.+++|++||++|+++|+++|+||+||||||||||||++|+++|++|.+|+||.++|+++++++|+++|+.
T Consensus 386 ---~~~~~~~~~~~r~~~~~~r~~~q~~~~~l~~~~tt~VGSfprp~~l~~ar~~~~~g~i~~~~l~~~~~~~i~~~V~~ 462 (755)
T 2nq5_A 386 ---KLEDLSRVATKRPSDFAKRRDIQQEKLHLPLLPTTTIGSFPQSREIRRTRLAWKRGDISDAEYKQFIQAEIERWIRI 462 (755)
T ss_dssp ---CCCCGGGSCSSCSSCHHHHHHHHHHHHCCCSSCBBCCSBCCC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ---HHHhCChhhcccCCchHHHHHHHHHhcCCCCcceeeeCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcccCCCCccchhHHHHHhccCCeEEeccceeeecCCceeeCcEEEccCCCCcccchhHHHHHHhccCCCceEe
Q 004263 478 QEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGM 557 (765)
Q Consensus 478 Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~~~g~~~~~~t~~~~~P~i~g~i~~~~p~~~~~~~~a~~~t~~~vK~~ 557 (765)
|+++||||||||||+|+|||+||+++|+||.++.+||+|+||++|+++|+|+|+|+++.|++++|++|+|+.+++|+|++
T Consensus 463 Q~~~GldvvtdGE~~R~d~v~~F~~~l~G~~~~~~g~~~~~~~~~~~~p~i~G~i~~~~p~~ve~~~~l~~~t~~pvK~~ 542 (755)
T 2nq5_A 463 QEDLDLDVLVHGEFERVDMVEFFGQKLAGFTTTKFGWVQSYGSRAVKPPIIYGDVQHLEPITVEETVYAQSLTDRPVKGM 542 (755)
T ss_dssp HHHHTCSBBCCBCTTCSCTTHHHHTTEEEEECCSSCCEEEETTEEECCCEEEEEEEECSCSSHHHHHHHHHTCSSCBEEE
T ss_pred HHHcCCCcccccccccccHHHHHHHhCCCcccccCCccccccccCCCCCEecCCccCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eechhHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHcc
Q 004263 558 LTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCG 637 (765)
Q Consensus 558 ltGPvTll~~s~~~~~~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~ 637 (765)
||||+|++.|++.+++.+++++++++|.++++++++|+++||++||||||++++++++++.++++|++|+++++|.++++
T Consensus 543 l~GP~Tl~~~~~~r~~~~~~el~~~lA~a~~~ei~~L~~aG~~~IQiDEP~l~~~l~~~~~~~~~~~~~av~~l~~~~~~ 622 (755)
T 2nq5_A 543 LTGPITITNWSFERTDIPRDQLFNQIGLAIKDEIKLLENAGIAIIQVDEAALREGLPLRKSKQKAYLDDAVHAFHIATSS 622 (755)
T ss_dssp EECHHHHHHHSBCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCHHHHSCSSHHHHHHHHHHHHHHHHHHHSS
T ss_pred ecCHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcccccccccCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999998888999999999999999999999999999999999999999988888899999999999999999
Q ss_pred CCCCceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHH
Q 004263 638 VQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINK 717 (765)
Q Consensus 638 v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~ 717 (765)
++++++||+|||||+|+++++.|.++++|+|+||++|++++.|+.+.+ +++++.|++||||+|++.+|++|+|+++|++
T Consensus 623 v~~~~~i~~HiC~G~~~~i~~~L~~~~aD~islE~~rsd~e~L~~~~~-~~~~~~v~lGvvd~~s~~ve~~eeV~~ri~~ 701 (755)
T 2nq5_A 623 VKDETQIHTHMCYSKFDEIIDAIRALDADVISIETSRSHGDIIESFET-AVYPLGIGLGVYDIHSPRVPTKEEVVANIER 701 (755)
T ss_dssp SCTTSEEEEEECCSCCSTTHHHHHHHCCSEEEC--------------------CEEEEECSCTTSSCCCCHHHHHHHHHG
T ss_pred CCCCCeEEEEeccCCcHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHh-ccCCCeEEEeeccCccCCCCCHHHHHHHHHH
Confidence 988899999999999999999999999999999988888999998876 4567899999999999999999999999999
Q ss_pred HHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 004263 718 MLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLAS 763 (765)
Q Consensus 718 a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r~~~~~ 763 (765)
+++++|.+++||||||||++++|+++++||++|+++|+.+|+++.+
T Consensus 702 a~~~v~~e~l~lsPdCGl~t~t~~e~~~kL~~mveaA~~vr~~~~~ 747 (755)
T 2nq5_A 702 PLRQLSPTQFWVNPDCGLKTRQEPETIAALKVLVAATKEVRQKLGN 747 (755)
T ss_dssp GGGSSCGGGEEEECSSCCTTSCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHhCCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999998854
No 5
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP}
Probab=100.00 E-value=1.4e-76 Score=647.92 Aligned_cols=330 Identities=24% Similarity=0.427 Sum_probs=305.6
Q ss_pred HHHHHHhhcCCCCccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHH
Q 004263 419 RLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVE 498 (765)
Q Consensus 419 r~~~q~~~~~lp~~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~ 498 (765)
...+|+++|+||+||||||||||||.+|+++|++|++|+||.++|+++++++|+++|+.|+++|||+||||||+|+|||+
T Consensus 5 ~~~~~~~~~~~~~~ptt~vGSfprp~~l~~ar~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~~GldvvtdGE~~R~d~~~ 84 (357)
T 3rpd_A 5 KTRLNKTSLNQALLPTSTAGSLPKPLWLAEPETLWSPWKLQGEELITGKHDALRLSLQDQQLAGIDIVSDGEQTRQHFVT 84 (357)
T ss_dssp --------CCCCSSCCCCSSCCCCCTTTBCTTCSSCCBSCCHHHHHHHHHHHHHHHHHHHHHTTCSSBCCTTTTCSCTTH
T ss_pred HHHHHHHhcCCCCcccceeccCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCcchhhHHH
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCeEEeccceeeecCCce-eeCcEEEccCCCCcccchhHHHHHHhccCCCceEeeechhHHhhhccccCCCCHH
Q 004263 499 YFGEQLSGFAFTVNGWVQSYGSRC-VKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRF 577 (765)
Q Consensus 499 ~f~~~l~G~~~~~~g~~~~~~t~~-~~~P~i~g~i~~~~p~~~~~~~~a~~~t~~~vK~~ltGPvTll~~s~~~~~~~~~ 577 (765)
||+++|+||.++.+||+++| ++| +++|+|+|+|++++|++++|++|+|+++++|+|+|||||+||+.|++.+.|.+++
T Consensus 85 ~f~~~l~G~~~~~~~~v~~~-~~~~~~~p~i~G~v~~~~~~~v~~~~~~~~~t~~~vK~~lpgP~t~~~~~~~~~y~~~~ 163 (357)
T 3rpd_A 85 TFIEHLNGVDFSKRKIVKIR-DRYDASVPTVVGPVSRQKSVFVEDAKFLRKQTTQPIKWALPGPMTMIDTLYDDHYKSRE 163 (357)
T ss_dssp HHHHTSEEEEEEEEEEEEET-TTEEEEEEEEEEEEECCSCSSHHHHHHHHHHCSSCBEEEEECHHHHHTSSEESSSCCHH
T ss_pred HHHHhCCCeeeccCcccccc-CCceeeCCEEEccCCCCCCCcHHHHHHHHhhccCCceEEeCCHHHHHHHhhhccCCCHH
Confidence 99999999999999999999 776 7999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccC------
Q 004263 578 ETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYS------ 651 (765)
Q Consensus 578 e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g------ 651 (765)
+++.+||.+|++|+++|+++||++||||||+|++ .++++.+|+++++|.++++++. .+.+|||||
T Consensus 164 e~~~dlA~a~~~ei~~l~~aG~~~IQiDeP~l~~-------~~~~~~~~~v~~~n~~~~~~~~--~~~iHiC~G~~~~~n 234 (357)
T 3rpd_A 164 KLAWEFAKILNEEAKELEAAGVDIIQFDEPAFNV-------FFDEVNDWGIACLERAIEGLKC--ETAVHICYGYGIKAN 234 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEEEECGGGGT-------CHHHHHHTHHHHHHHHHTTCCS--EEEEEECSCCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEecCccccc-------cHHHHHHHHHHHHHHHHhCCCC--ceEEEEecCCccCCc
Confidence 9999999999999999999999999999999986 3678999999999999999974 567899996
Q ss_pred ------------ChhHHHHHHHcCCccEEEEecCC--CChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHH
Q 004263 652 ------------NFNDIIHSIMDMDADVITIENSR--SDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINK 717 (765)
Q Consensus 652 ------------~~~~i~~~l~~l~~D~isiE~~r--~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~ 717 (765)
+|+++++.|.++++|+|+||.++ +++++|+.+. ++.|++||||+|++++|++|+|+++|++
T Consensus 235 ~d~~~t~~~~~g~y~~i~~~l~~~~~D~i~lE~~~~r~~~e~l~~~~-----~k~v~lGvvd~~s~~ve~~eev~~ri~~ 309 (357)
T 3rpd_A 235 TDWKKTLGSEWRQYEEVFPKLQKSNIDIISLECHNSHVPMELLELIR-----GKKVMVGAIDVATDTIETAEEVADTLRK 309 (357)
T ss_dssp HHHHTTSCSCCCGGGGTHHHHHHSSCCEEEECCTTCCCCGGGGGGGT-----TSEEEEECSCTTCSSCCCHHHHHHHHHH
T ss_pred cccccccccccCcHHHHHHHHHhCCCCEEEEEecCCCCChHHHHhcC-----CCEEEeccccCcCCCCCCHHHHHHHHHH
Confidence 46899999999999999999544 4678777664 5799999999999999999999999999
Q ss_pred HHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 004263 718 MLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLAS 763 (765)
Q Consensus 718 a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r~~~~~ 763 (765)
+++++|++++||||||||++++|+++++||++|++||+.+|+++.+
T Consensus 310 a~~~v~~~~l~lsPdCGl~~~~~~~a~~kL~~mv~aa~~~r~~l~~ 355 (357)
T 3rpd_A 310 ALKFVDADKLYPCTNCGMTPLSHQVTRGKLNALSAGAEIVRKELLA 355 (357)
T ss_dssp HHTTSCGGGEEEECSSCCTTSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999875
No 6
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes}
Probab=100.00 E-value=3.5e-72 Score=619.14 Aligned_cols=331 Identities=17% Similarity=0.201 Sum_probs=287.9
Q ss_pred CCCCccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCe
Q 004263 428 NLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGF 507 (765)
Q Consensus 428 ~lp~~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~ 507 (765)
+||+||||||||||||++|++||++|++|+||.++|+++++++|+++|+.|+++|||+||||||+|+|||+||++.|+||
T Consensus 3 ~~~~~~tt~vGSfprp~~l~~ar~~~~~g~i~~~~l~~~~~~~i~~~v~~Q~~~GldvvtdGE~~R~d~~~~f~~~l~G~ 82 (375)
T 1ypx_A 3 QVAPFYADHVGSILRTKGIKDAREKFQSGEITALELRKIENTEIKYIVEKQKEVGLKSITDGEFRRAWWHFDFLENLDGV 82 (375)
T ss_dssp CSSSCSBCCCSCCCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHTCSEECCTTTTC--CCHHHHTTSEEE
T ss_pred CCCCCccceeCcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcchhhHHHHHHHHCCCe
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred E-EeccceeeecCCce-eeCcEEEccCCCC-cccchhHHHHHHhccCC-C-ceEeeechhHHhhhccccCCC--CH-HHH
Q 004263 508 A-FTVNGWVQSYGSRC-VKPPIIYGDVSRP-KAMTVFWSSMAQSMTKR-P-MKGMLTGPVTILNWSFVRNDQ--PR-FET 579 (765)
Q Consensus 508 ~-~~~~g~~~~~~t~~-~~~P~i~g~i~~~-~p~~~~~~~~a~~~t~~-~-vK~~ltGPvTll~~s~~~~~~--~~-~e~ 579 (765)
. ++.+||+|+++... +++|+|+|+|+++ +| +++|++|+++++++ | +|++||||+||+.|++.+++. ++ +++
T Consensus 83 ~~~~~~~~~~f~~~~~~~~~p~i~g~i~~~~~p-~~~~~~~l~~~~~~~~~vK~~l~gP~tl~~~~~~~~~~Y~~~~~~l 161 (375)
T 1ypx_A 83 EGYDAAGGIQFSKVQTKSHSVKITGPIDFTTHP-FIEDFIFLKEAVGDNHVAKQTIPSPAMLHYRGDIEYQPYLDDAEKF 161 (375)
T ss_dssp EEC----------------CEEEEEEEECSCCT-HHHHHHHHHHHHCSSSEECEEEECTHHHHHHEEECSHHHHHCHHHH
T ss_pred eeecCCCceeecCCCCCccCceecCCCCCCCCc-hHHHHHHHHHHhcCCCceEEecCCHHHHHHHHhcchhhccChHHHH
Confidence 9 78899999554433 8999999999987 78 69999999999887 8 599999999999999877654 67 999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEecccccccCC--------CCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccC
Q 004263 580 CYQIALAIKDEVEDLEKAGITVIQIDEAALREGL--------PLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYS 651 (765)
Q Consensus 580 ~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l--------~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g 651 (765)
+.+||.+|++++++|+++||++||||||++++.+ |+++.+++++++|+++++|.++++++++++|++|||||
T Consensus 162 ~~~la~a~~~ei~~l~~aG~~~IQiDeP~l~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~n~~~~~~~~~~~i~~HiC~g 241 (375)
T 1ypx_A 162 ANDLATAYQKAIQAFYDAGCRYLQLDDTSWSYLCSDEQREVVRQRGFDPETLQETYKNLINEAIKHKPADMVITMHICRG 241 (375)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECHHHHTTSCC--------CCSTTTHHHHHHHHHHHHTTTCCTTCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEecCCchhhhhccchhcccccccCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEecc
Confidence 9999999999999999999999999999999877 67777888999999999999999998889999999998
Q ss_pred ----------ChhHHHHHHH-cCCccEEEEe--cCCC-ChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHH
Q 004263 652 ----------NFNDIIHSIM-DMDADVITIE--NSRS-DEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINK 717 (765)
Q Consensus 652 ----------~~~~i~~~l~-~l~~D~isiE--~~r~-~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~ 717 (765)
+|+++++.|. ++++|+|+|| ++|+ ++++|+.+++ .++.|++||||+|++++|++|+|+++|++
T Consensus 242 n~~s~~~~~g~~~~i~~~l~~~~~~d~i~lE~~~~r~g~~e~L~~~~~---~~~~v~lGvvd~~~~~~e~~e~v~~ri~~ 318 (375)
T 1ypx_A 242 NFRSTWIAEGGYGPVAETLFGKLNIDGFFLEYDNERSGDFAPLKYVTR---PDLKIVLGLITSKTGELEDEAAIKARIEE 318 (375)
T ss_dssp ----------CCSGGGHHHHTTCCCSEEEEECCSCC---CCTTCCCCC---TTCEEEEEEECSSSCC-CCSHHHHHHHHH
T ss_pred ccCCccccccchHHHHHHHHhhCCCCEEEEEecCCCCCcHHHHHHhhh---cCCeEEEeeecCcCCCCCCHHHHHHHHHH
Confidence 6679999999 9999999999 5677 7888887765 26799999999999999999999999999
Q ss_pred HHhhcCCCcEEEcCCCCCC------CCChhhHHHHHHHHHHHHHHHHHHHh
Q 004263 718 MLAVLESNILWVNPDCGLK------TRKYSEVKPALSNMVAAAKLLRTQLA 762 (765)
Q Consensus 718 a~~~i~~~~l~vsPdCGL~------~~~~~~~~~kL~~mv~aa~~~r~~~~ 762 (765)
+++++|.+++||||||||+ +++++++++||++|+++|+.+|+++.
T Consensus 319 a~~~v~~e~l~lsPdCGl~s~~~g~~~t~~~a~~kL~~~v~~A~~~~~~~~ 369 (375)
T 1ypx_A 319 ASEIVPLSQLRLSPQCGFASTEEGNILTEEEQWDKLRYVVRLANDIWGELE 369 (375)
T ss_dssp HHHHSCGGGEEEEESSCCC--------CHHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHhcCccceEecCCCCccccccCCCCCHHHHHHHHHHHHHHHHHHHhchh
Confidence 9999999999999999999 89999999999999999999998764
No 7
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A*
Probab=100.00 E-value=5.4e-55 Score=509.16 Aligned_cols=314 Identities=15% Similarity=0.180 Sum_probs=260.0
Q ss_pred ceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 004263 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (765)
Q Consensus 2 ~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~r 81 (765)
+|||++|||+ .|||+|+|+||+|+||+++|+++++++|+++|+.|+++|||+||||||||||+|+|++.+||++|.|
T Consensus 438 Tt~IGSfPrp---~ELK~Are~y~~G~Is~eeL~~~~~~~i~~~V~~QeeaGLDvItdGEFsR~D~Vldf~~~L~Gi~~~ 514 (766)
T 1t7l_A 438 TTTIGSFPQT---PEVRKMRSKYRKGEISKEEYEAFIKEQIKKAIELQEEIGLDVLVHGEFERTDMVEFFAEKLNGIATT 514 (766)
T ss_dssp BCCCSCCCCC---HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHTCSSBCCCCTTCSSHHHHHHTTSEEEECC
T ss_pred eeeeCcCCCC---HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcchhhHHHHHHHHhCCcccc
Confidence 4677779999 9999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHcCC-CCceEeehHHH
Q 004263 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGM-ETVPVLVGPVS 160 (765)
Q Consensus 82 f~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~-~~K~vl~GP~T 160 (765)
+... ...+++.+ |..|.+.|+. ....++.++++++|++++. ++|++|+||+|
T Consensus 515 ~~g~------------------------~~~~~~~~-~~~pi~~G~i--~ra~pMtlde~~~Aksl~~~pvK~~LtGPvT 567 (766)
T 1t7l_A 515 QNGW------------------------VLSYGSRC-YRPPIIYGTV--TRPEPMTLKEITYAQSLTEKPVKGMLTGPVT 567 (766)
T ss_dssp SSCC------------------------EEEETTEE-ECCCEEEEEE--ECCSCSSHHHHHHHHHTCSSCBEEEEECHHH
T ss_pred cccc------------------------cccccccc-ccCceeecCC--ccCCcChHHHHHHHHHhcCCCeEEEEeCHHH
Confidence 5310 01122211 3345555542 2234557999999999874 48999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChH---HHHHHHHHHHHHHc--cCC-
Q 004263 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSH---KLQAFSDAYSELQS--SLS- 234 (765)
Q Consensus 161 ~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~---~~~~~~~~y~~l~~--~~~- 234 (765)
|+.+++..++ .++.+++++|+++|++++++|+++||+|||||||+|+.+++.. +.+.+..+|+.+.. +++
T Consensus 568 lL~ls~~r~d----~~r~ell~dLA~ayreeI~~L~~AGa~~IQIDEPaL~~~L~~~~~d~~~~l~~a~~aln~a~gv~~ 643 (766)
T 1t7l_A 568 IMSWSYYRED----IPEREIAYQIALAINEEVKDLEEAGIKIVQIDEPAFREKAPIKKSKWPEYFEWAINAFNLAANARP 643 (766)
T ss_dssp HHHTSEECSS----SCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTHHHHTSCSSGGGHHHHHHHHHHHHHHHTCCCT
T ss_pred HHHHhhccCC----CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcccccCCCcchhHHHHHHHHHHHHHHhhcCCC
Confidence 9998874232 4789999999999999999999999999999999999876532 56777777776643 222
Q ss_pred CCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCC-CCEEEEEEeeCCCCCcCCHHHHHHHHHHH
Q 004263 235 GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPL-GKYLFAGVVDGRNIWANDLASSLTTLQDL 313 (765)
Q Consensus 235 ~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~-~k~l~lGvVdgrn~~~ed~~~~~~~l~~~ 313 (765)
..+|++|+|||++ +++++.|.++| ||+|+||++++..++..+...+|. +|.|++||||+||+|++|+++++++|+++
T Consensus 644 ~~~I~lH~C~G~~-~di~~~L~~l~-VD~IsLE~~Rs~~elL~~l~~~p~~~k~L~lGVVD~rn~~ved~EeI~~rI~~a 721 (766)
T 1t7l_A 644 ETQIHAHMCYSDF-NEIIEYIHQLE-FDVISIEASRSKGEIISAFENFKGWIKQIGVGVWDIHSPAVPSINEMREIVERV 721 (766)
T ss_dssp TSEEEEECCCSCC-TTTHHHHTTSC-CSEEEEECTTTTTGGGHHHHTSTTCCSEEEEECSCTTSCSCCCHHHHHHHHHHH
T ss_pred CceEEEEEecCch-HHHHHHHHcCC-CCEEEEecCCCchhHHHHHHhccccCCeEEEEEECCCCCCCCCHHHHHHHHHHH
Confidence 3589999999999 89999999999 999999988764333222222432 47999999999999999999999999999
Q ss_pred hhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHH
Q 004263 314 AGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQ 356 (765)
Q Consensus 314 ~~~~~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~q 356 (765)
.+++|.+||||||||||+|+|++ .+.+.|++|++||+|
T Consensus 722 ~~~Vg~erL~VsPdCGL~~~p~~-----e~~~kLk~mvaaAke 759 (766)
T 1t7l_A 722 LRVLPKELIWINPDCGLKTRNWD-----EVIPSLRNMVALAKE 759 (766)
T ss_dssp TTTSCGGGEEEECSSCCTTSCHH-----HHHHHHHHHHHHHHH
T ss_pred HHhcCcccEEEeCCCCCCCCCHH-----HHHHHHHHHHHHHHH
Confidence 99999999999999999999987 357788888888875
No 8
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP}
Probab=100.00 E-value=1.7e-49 Score=433.97 Aligned_cols=312 Identities=18% Similarity=0.143 Sum_probs=266.0
Q ss_pred ceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 004263 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (765)
Q Consensus 2 ~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~r 81 (765)
||||++|||+ .|||+|+++|++|+||.++|+++.++.+++.++.|+++|||+||||||+|.|++.++...++++-
T Consensus 20 tt~vGSfprp---~~l~~ar~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~~GldvvtdGE~~R~d~~~~f~~~l~G~~-- 94 (357)
T 3rpd_A 20 TSTAGSLPKP---LWLAEPETLWSPWKLQGEELITGKHDALRLSLQDQQLAGIDIVSDGEQTRQHFVTTFIEHLNGVD-- 94 (357)
T ss_dssp CCCSSCCCCC---TTTBCTTCSSCCBSCCHHHHHHHHHHHHHHHHHHHHHTTCSSBCCTTTTCSCTTHHHHHTSEEEE--
T ss_pred cceeccCCCC---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCcchhhHHHHHHHhCCCee--
Confidence 4667779999 89999999999999999999999999999999999999999999999999999999877666541
Q ss_pred ccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHc-CCCCceEeehHHH
Q 004263 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (765)
Q Consensus 82 f~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~-g~~~K~vl~GP~T 160 (765)
|. ..+.. ++.+||+|.+|.+.|+..+ ..+++++++++++++ +.++|.+||||+|
T Consensus 95 ~~----------------------~~~~v-~~~~~~~~~~p~i~G~v~~--~~~~~v~~~~~~~~~t~~~vK~~lpgP~t 149 (357)
T 3rpd_A 95 FS----------------------KRKIV-KIRDRYDASVPTVVGPVSR--QKSVFVEDAKFLRKQTTQPIKWALPGPMT 149 (357)
T ss_dssp EE----------------------EEEEE-EETTTEEEEEEEEEEEEEC--CSCSSHHHHHHHHHHCSSCBEEEEECHHH
T ss_pred ec----------------------cCccc-cccCCceeeCCEEEccCCC--CCCCcHHHHHHHHhhccCCceEEeCCHHH
Confidence 10 00111 2337888999999997544 577889999999987 7899999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEE
Q 004263 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240 (765)
Q Consensus 161 ~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l 240 (765)
++.++.+ ++|. ++.+++.+|+.+|++++++|+++||++||||||+|... ..+..+...++++...++.+ ..+.+
T Consensus 150 ~~~~~~~-~~y~---~~~e~~~dlA~a~~~ei~~l~~aG~~~IQiDeP~l~~~-~~~~~~~~v~~~n~~~~~~~-~~~~i 223 (357)
T 3rpd_A 150 MIDTLYD-DHYK---SREKLAWEFAKILNEEAKELEAAGVDIIQFDEPAFNVF-FDEVNDWGIACLERAIEGLK-CETAV 223 (357)
T ss_dssp HHTSSEE-SSSC---CHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECGGGGTC-HHHHHHTHHHHHHHHHTTCC-SEEEE
T ss_pred HHHHhhh-ccCC---CHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccc-HHHHHHHHHHHHHHHHhCCC-CceEE
Confidence 9988875 6674 89999999999999999999999999999999999864 23344556677777766654 47778
Q ss_pred EeccC------------------CCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCC
Q 004263 241 ETYFA------------------DVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWAND 302 (765)
Q Consensus 241 ~tyfg------------------~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed 302 (765)
|+||| ++ +++++.|.+++ ||+|+||+++...+++.+.. + .+|.|++||||++++++++
T Consensus 224 HiC~G~~~~~n~d~~~t~~~~~g~y-~~i~~~l~~~~-~D~i~lE~~~~r~~~e~l~~-~-~~k~v~lGvvd~~s~~ve~ 299 (357)
T 3rpd_A 224 HICYGYGIKANTDWKKTLGSEWRQY-EEVFPKLQKSN-IDIISLECHNSHVPMELLEL-I-RGKKVMVGAIDVATDTIET 299 (357)
T ss_dssp EECSCCSSHHHHHHHTTSCSCCCGG-GGTHHHHHHSS-CCEEEECCTTCCCCGGGGGG-G-TTSEEEEECSCTTCSSCCC
T ss_pred EEecCCccCCccccccccccccCcH-HHHHHHHHhCC-CCEEEEEecCCCCChHHHHh-c-CCCEEEeccccCcCCCCCC
Confidence 99985 47 88999999999 99999999986556776542 4 5799999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHcc
Q 004263 303 LASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (765)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~ 369 (765)
++++.++|+++.+++|.+++||+|+|||..+|.+ -|.+||+.|+..++.++
T Consensus 300 ~eev~~ri~~a~~~v~~~~l~lsPdCGl~~~~~~----------------~a~~kL~~mv~aa~~~r 350 (357)
T 3rpd_A 300 AEEVADTLRKALKFVDADKLYPCTNCGMTPLSHQ----------------VTRGKLNALSAGAEIVR 350 (357)
T ss_dssp HHHHHHHHHHHHTTSCGGGEEEECSSCCTTSCHH----------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccEEEeCCCCCCCCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999977654 49999999999988764
No 9
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A*
Probab=100.00 E-value=7.6e-48 Score=458.44 Aligned_cols=309 Identities=17% Similarity=0.175 Sum_probs=267.5
Q ss_pred eecccCCCc---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeE--E
Q 004263 435 TTIGSFPQT---MDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFA--F 509 (765)
Q Consensus 435 t~iGSfPr~---~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~--~ 509 (765)
||+.||||+ +|||+|+++||+|+||.++|.++.+++++++|+.|+++|||+||+|||+|||+|++|...|+|+. |
T Consensus 3 ~~~~g~PR~g~~reLk~a~e~~~~g~i~~~~L~~~~~~~~~~~~~~Q~~aGld~i~~gdfs~yd~vld~~~~l~~ip~r~ 82 (765)
T 1u1j_A 3 SHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNTFAHYDQVLDTTAMLGAVPPRY 82 (765)
T ss_dssp BBCSCCCCSCTTCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTTCSBCEESCCCSSCHHHHHHHHTTCCCGGG
T ss_pred cceecCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeccCCcccchHHHHHHHHhCCcCcce
Confidence 455689999 99999999999999999999999999999999999999999999999999999999999888874 2
Q ss_pred e--------------ccc--------eeeecCCce-eeCcEEEccCCCC---cccchhHHHHHHhccCCCceEeeechhH
Q 004263 510 T--------------VNG--------WVQSYGSRC-VKPPIIYGDVSRP---KAMTVFWSSMAQSMTKRPMKGMLTGPVT 563 (765)
Q Consensus 510 ~--------------~~g--------~~~~~~t~~-~~~P~i~g~i~~~---~p~~~~~~~~a~~~t~~~vK~~ltGPvT 563 (765)
. .+| |++||+||| |++|+|+|++++. +++ ++++++++++ +.++|++|+||+|
T Consensus 83 ~~~~~~~~~~~yf~~arG~~~~~a~emtkwfdtNyhy~vPe~~~~~~~~~~~~~~-l~~~~~ak~~-g~~~K~~l~GP~T 160 (765)
T 1u1j_A 83 GYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVNFSYASHKA-VNEYKEAKAL-GVDTVPVLVGPVS 160 (765)
T ss_dssp CCCSSSCCHHHHHHHHHCCSSSCCCCEEECTTSSCEEECCEECTTCCCCCCCCHH-HHHHHHHHHT-TCCCEEEEECHHH
T ss_pred eccccCccHHHHHHHhCCCccccchhhheecccCcCceeeEEcCCcccccCCcch-HHHHHHHHhc-CCCceEEECCHHH
Confidence 1 233 679999998 9999999998853 555 8999999988 7889999999999
Q ss_pred HhhhccccCC-C---CHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCC
Q 004263 564 ILNWSFVRND-Q---PRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQ 639 (765)
Q Consensus 564 ll~~s~~~~~-~---~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~ 639 (765)
++.++....+ . ++.+++++|+.+|++++++|.++||++||||||+|...++ . + .+++++.+++.+.
T Consensus 161 ll~l~k~~~~~~~~~~~~~ll~~L~~~y~~~l~~L~~aG~~~VQiDEP~L~~~l~-----~-~----~~~~~~~a~~~l~ 230 (765)
T 1u1j_A 161 YLLLSKAAKGVDKSFELLSLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLE-----G-Q----KLQAFTGAYAELE 230 (765)
T ss_dssp HHHTCEECTTCCTTCCGGGGHHHHHHHHHHHHHHHHHTTCCEEEEECGGGGSCCC-----H-H----HHHHHHHHHHHST
T ss_pred HHHhhhcccccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCccccCCC-----H-H----HHHHHHHHHHHHH
Confidence 9966552222 2 5789999999999999999999999999999999998753 1 2 2556666666552
Q ss_pred ---CCceEEEEeccCChh-HHHHHHHcCC-ccEEEEecCCC--ChhhHHH-hhhcccCCceeccccccCCCCCCCCHHHH
Q 004263 640 ---DTTQVHTHMCYSNFN-DIIHSIMDMD-ADVITIENSRS--DEKLLSV-FREGVKYRAGIGPGVYDIHSPRIPSTEEI 711 (765)
Q Consensus 640 ---~~~~I~~H~C~g~~~-~i~~~l~~l~-~D~isiE~~r~--~~~~L~~-~~~~~~~~~~l~~GVvd~~s~~ve~~eev 711 (765)
++..+++|+|||++. ++++.|.+++ +|+|++|..+. +++.+.. |+. ++.|++||||++|+|.++++++
T Consensus 231 ~~~~~~~i~lhtc~G~~~~~~~~~l~~l~~vd~l~lD~v~~~~~l~~l~~~l~~----~k~L~lGvVdgrni~~~d~e~v 306 (765)
T 1u1j_A 231 STLSGLNVLVETYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPE----GKYLFAGVVDGRNIWANDFAAS 306 (765)
T ss_dssp TTTCSSEEEEECCSSCCCHHHHHHHTTCTTCCEEEEESSSCTTHHHHHHHCCCS----SCEEEEEEECSSSCBCCCHHHH
T ss_pred hhcCCCeEEEEeCCCCcchHHHHHHHcCCCCcEEEEEecCCcccHHHHHHhcCC----CCEEEEEeeCCcccCCCCHHHH
Confidence 267899999999999 8999999999 99999995443 3455554 433 6799999999999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEcCCCCCC----------CCChhhH------HHHHHHHHHHHHHHHH
Q 004263 712 ADRINKMLAVLESNILWVNPDCGLK----------TRKYSEV------KPALSNMVAAAKLLRT 759 (765)
Q Consensus 712 ~~~i~~a~~~i~~~~l~vsPdCGL~----------~~~~~~~------~~kL~~mv~aa~~~r~ 759 (765)
.++++++++++|.+++||+|+|||. ..+++.+ ++||+.++.+|+.+++
T Consensus 307 ~~~l~~~~~~lg~~~l~lspsCgL~hvP~~~~~e~~l~~~~~~~~~fa~~Kl~el~~la~~l~~ 370 (765)
T 1u1j_A 307 LSTLQALEGIVGKDKLVVSTSCSLLHTAVDLINETKLDDEIKSWMAFAAQKVVEVNALAKALAG 370 (765)
T ss_dssp HHHHHHHHHHCCSSCEEEEESSCGGGSCSCGGGCCSSCHHHHTTBCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcEEEcCCCCccCCccccccccCCCHHHHhhhHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999 6678888 9999999999999884
No 10
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes}
Probab=100.00 E-value=7.8e-48 Score=424.87 Aligned_cols=318 Identities=16% Similarity=0.185 Sum_probs=255.9
Q ss_pred ceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 004263 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (765)
Q Consensus 2 ~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~r 81 (765)
+|||++|||+ ++||+|+++|++|+||.++|+++.++.+++.++.|+++|||+||||||+|+|+|+|+...|+++. +
T Consensus 9 tt~vGSfprp---~~l~~ar~~~~~g~i~~~~l~~~~~~~i~~~v~~Q~~~GldvvtdGE~~R~d~~~~f~~~l~G~~-~ 84 (375)
T 1ypx_A 9 ADHVGSILRT---KGIKDAREKFQSGEITALELRKIENTEIKYIVEKQKEVGLKSITDGEFRRAWWHFDFLENLDGVE-G 84 (375)
T ss_dssp BCCCSCCCCC---HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHTCSEECCTTTTC--CCHHHHTTSEEEE-E
T ss_pred cceeCcCCCC---HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcchhhHHHHHHHHCCCee-e
Confidence 4666779999 99999999999999999999999999999999999999999999999999999999988777662 1
Q ss_pred ccCCCCCccchhhhhhccCCCCCCcccceeecccCce-eecceecCCCccccCCccchHHHHHHHHc-CC-C-CceEeeh
Q 004263 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYH-YIVPELGPDVNFSYASHKAVQEYKEAKAL-GM-E-TVPVLVG 157 (765)
Q Consensus 82 f~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyh-Y~vPe~~~~~~~~l~~~~~~~e~~~a~~~-g~-~-~K~vl~G 157 (765)
|. ..++.+ |..+++ |..|.+.|+..+. .+++++++++++++ +. + +|.+|||
T Consensus 85 ~~----------------------~~~~~~-f~~~~~~~~~p~i~g~i~~~--~~p~~~~~~~l~~~~~~~~~vK~~l~g 139 (375)
T 1ypx_A 85 YD----------------------AAGGIQ-FSKVQTKSHSVKITGPIDFT--THPFIEDFIFLKEAVGDNHVAKQTIPS 139 (375)
T ss_dssp C---------------------------------------CEEEEEEEECS--CCTHHHHHHHHHHHHCSSSEECEEEEC
T ss_pred ec----------------------CCCcee-ecCCCCCccCceecCCCCCC--CCchHHHHHHHHHHhcCCCceEEecCC
Confidence 11 112344 444444 8999999986654 35599999999987 33 5 6999999
Q ss_pred HHHHhhhccC-CCCcCCCCCH-HHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCC--------------hHHHHH
Q 004263 158 PVSYLLLSKP-AKGVEKSFSL-LSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD--------------SHKLQA 221 (765)
Q Consensus 158 P~T~l~l~~~-~~~y~~~~~~-~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~--------------~~~~~~ 221 (765)
|+|++.++.. .+.|+ +. .+++++|+.+|++++++|+++||++||||||+|...++ ++..+.
T Consensus 140 P~tl~~~~~~~~~~Y~---~~~~~l~~~la~a~~~ei~~l~~aG~~~IQiDeP~l~~~l~~~~~~~~~~~~~~~~~~~~~ 216 (375)
T 1ypx_A 140 PAMLHYRGDIEYQPYL---DDAEKFANDLATAYQKAIQAFYDAGCRYLQLDDTSWSYLCSDEQREVVRQRGFDPETLQET 216 (375)
T ss_dssp THHHHHHEEECSHHHH---HCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECHHHHTTSCC--------CCSTTTHHHH
T ss_pred HHHHHHHHhcchhhcc---ChHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCCchhhhhccchhcccccccCCHHHHHHH
Confidence 9999987542 24563 56 89999999999999999999999999999999975331 234567
Q ss_pred HHHHHHHHHccCC-CCcEEEEeccC----------CCchhhHHHHh-cCCCccEEEEEeccCC-CChhhHhhhCCC-CCE
Q 004263 222 FSDAYSELQSSLS-GLNVLIETYFA----------DVPAETYKILT-SLKGVTGFGFDLIRGT-KTLDLIKTEFPL-GKY 287 (765)
Q Consensus 222 ~~~~y~~l~~~~~-~~~i~l~tyfg----------~~~~~~~~~l~-~l~~vd~l~lD~~~~~-~~l~~l~~~~p~-~k~ 287 (765)
+.++++.+.++.+ ...+++|+||| ++ +++++.|. +++ ||+|+|||++.+ +++++|.. ++. +|.
T Consensus 217 ~v~~~n~~~~~~~~~~~i~~HiC~gn~~s~~~~~g~~-~~i~~~l~~~~~-~d~i~lE~~~~r~g~~e~L~~-~~~~~~~ 293 (375)
T 1ypx_A 217 YKNLINEAIKHKPADMVITMHICRGNFRSTWIAEGGY-GPVAETLFGKLN-IDGFFLEYDNERSGDFAPLKY-VTRPDLK 293 (375)
T ss_dssp HHHHHHHHTTTCCTTCEEEEEECCC----------CC-SGGGHHHHTTCC-CSEEEEECCSCC---CCTTCC-CCCTTCE
T ss_pred HHHHHHHHHhcCCCCCeEEEEEeccccCCccccccch-HHHHHHHHhhCC-CCEEEEEecCCCCCcHHHHHH-hhhcCCe
Confidence 7778887776654 36899999997 67 78999999 999 999999999855 48888875 765 789
Q ss_pred EEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc------ccccccccccCCcHHHHhHHHHHHHHHHHH
Q 004263 288 LFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL------HTAVDLENETKLDQEIKSWLAFAAQKVVEV 361 (765)
Q Consensus 288 l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~------h~P~~~~~E~~l~~~~~~~lafA~qKl~el 361 (765)
|++||||+++.+++++++++++|+++++++|.+||||||||||. .++.+ -|.+||+.|
T Consensus 294 v~lGvvd~~~~~~e~~e~v~~ri~~a~~~v~~e~l~lsPdCGl~s~~~g~~~t~~----------------~a~~kL~~~ 357 (375)
T 1ypx_A 294 IVLGLITSKTGELEDEAAIKARIEEASEIVPLSQLRLSPQCGFASTEEGNILTEE----------------EQWDKLRYV 357 (375)
T ss_dssp EEEEEECSSSCC-CCSHHHHHHHHHHHHHSCGGGEEEEESSCCC--------CHH----------------HHHHHHHHH
T ss_pred EEEeeecCcCCCCCCHHHHHHHHHHHHHhcCccceEecCCCCccccccCCCCCHH----------------HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 44443 499999999
Q ss_pred HHHHHHccC
Q 004263 362 NALAKALSG 370 (765)
Q Consensus 362 ~~l~~~l~~ 370 (765)
+..|+.+.+
T Consensus 358 v~~A~~~~~ 366 (375)
T 1ypx_A 358 VRLANDIWG 366 (375)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHHh
Confidence 999988865
No 11
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A
Probab=100.00 E-value=5.7e-43 Score=415.15 Aligned_cols=314 Identities=17% Similarity=0.152 Sum_probs=255.4
Q ss_pred ccceecccCCCc---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccC---
Q 004263 432 LPTTTIGSFPQT---MDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLS--- 505 (765)
Q Consensus 432 ~~tt~iGSfPr~---~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~--- 505 (765)
+.++|+-||||+ +|||+|+++||+|+||.++|.+..++.++.+|+.|+++|||+|++|+|+|||+|++..-.++
T Consensus 3 ~~~~~~lgyPRig~~relk~a~e~yw~g~i~~~~L~~~~~~~r~~~~~~q~~aGid~i~~gdfs~yD~vl~~~~~~~~~p 82 (755)
T 2nq5_A 3 LTKVSSLGYPRLGENREWKKLIEAYWAGKVSKNDLFAGAKELRLDFLKKQLNAGLDLIPVGDFSLYDHILDLSVQFNIIP 82 (755)
T ss_dssp CCEEBCSCCCSSCTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHTTCSBEEESCCCSSCHHHHHHHHTTCCC
T ss_pred ccccceecCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccCCccchHHHHHHHHHhCCCc
Confidence 445565589995 99999999999999999999999999999999999999999999999999998865443221
Q ss_pred ------------------Ce--EEeccceeeecCCce-eeCcEEEc-cCCCCcccchhHHHHHHhccCCCceEeeechhH
Q 004263 506 ------------------GF--AFTVNGWVQSYGSRC-VKPPIIYG-DVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVT 563 (765)
Q Consensus 506 ------------------G~--~~~~~g~~~~~~t~~-~~~P~i~g-~i~~~~p~~~~~~~~a~~~t~~~vK~~ltGPvT 563 (765)
|. .+ +.+|++|||||| |++|++.+ +++...+..++++.+|++..+.++|++|+||+|
T Consensus 83 ~r~~~~~~~l~~yFa~aRG~~~~~-a~emtkwfdtNyhY~vPe~~~~~~~~~~~~~l~~~~eA~~~~g~~vK~vl~GP~T 161 (755)
T 2nq5_A 83 KRFAKEPIDIDLYFAIARGNKENV-ASSMKKWFNTNYHYIVPEWSKQRPKLNNNRLLDLYLEAREVVGDKAKPVITGPIT 161 (755)
T ss_dssp GGGTTSCSSHHHHHHHHHCCSSSC-CCCEEECTTSSCEEECCBCCSCCCCCCCCHHHHHHHHHHHHHGGGEEEEEECHHH
T ss_pred hhhccccccHHHHHHHHhCCCCCC-cccceeeccCCCceeeeeeeCceeeecCchHHHHHHHHHHhcCCCcEEEEccHHH
Confidence 11 11 467999999998 99999997 666554445899999984457899999999999
Q ss_pred HhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCce
Q 004263 564 ILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQ 643 (765)
Q Consensus 564 ll~~s~~~~~~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~ 643 (765)
++.+++. .+ ...+++.+++.+|++++++|.++|+++||||||+|..+++ ++..+.+..+|+.+.+.+. +..
T Consensus 162 la~l~k~-~~-~~~dll~~L~~~y~~~l~~L~~~Ga~~VQiDEP~L~~dl~------~~~~~~~~~ay~~l~~~~~-~~~ 232 (755)
T 2nq5_A 162 YVALSTG-VE-DFTAAVKSLLPLYKQVFTELVKAGASYIQVDEPIFVTDEG------KDYLQAAKAVYAYFAKEVP-DAK 232 (755)
T ss_dssp HHHTCBS-CS-CHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECGGGGSSGG------GGGHHHHHHHHHHHHHHST-TCE
T ss_pred HHHHhcC-Cc-HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccCCCC------HHHHHHHHHHHHHHHhccc-CCc
Confidence 9998875 22 4669999999999999999999999999999999998753 1234455566666543221 467
Q ss_pred EEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcC
Q 004263 644 VHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE 723 (765)
Q Consensus 644 I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~ 723 (765)
+++|+|||++. +++.|.++++|+|++|..+...+.|..+.+..+.++.|++||||++|+|.++++++.++++++++.
T Consensus 233 v~lhtyfG~~~-~~~~l~~l~vd~l~lD~v~~~~~~l~~l~~~~~~~k~L~~GvVdgrniw~~d~e~v~~~l~~~~~~-- 309 (755)
T 2nq5_A 233 FIFQTYFEGLI-DSQVLSQLPVDAFGLDFVYGLEENLEAIKTGAFKGKEIFAGVIDGRNIWSSDFVKTSALLETIEEQ-- 309 (755)
T ss_dssp EEEECCSSCCT-THHHHTTSSCSEEEEESSSSHHHHHHHHHTTTTTTSEEEEEEECTTSCBCCCHHHHHHHHHHHHHT--
T ss_pred EEEEEeCCChH-HHHHHHhCCCCEEEEEecCCChhhHHHHHHhcCCCCEEEEEeeCCcccCCCCHHHHHHHHHHHHhh--
Confidence 99999999987 899999999999999965533234444432122368999999999999999999999999999986
Q ss_pred CCcEEEcCCCCCCCCChh----------------hHHHHHHHHHHHHHHHH
Q 004263 724 SNILWVNPDCGLKTRKYS----------------EVKPALSNMVAAAKLLR 758 (765)
Q Consensus 724 ~~~l~vsPdCGL~~~~~~----------------~~~~kL~~mv~aa~~~r 758 (765)
.+++||+|+|||.+.+.+ -|.+||..++..++.+.
T Consensus 310 ~~~l~vsPsCsL~h~P~~l~~e~~~~~~~~~~~~fa~~k~~e~~~l~~~~~ 360 (755)
T 2nq5_A 310 SAALTIQPSCSLLHVPVTTKNETDLDPVLRNGLAFADEKLTEVKRLAEHLD 360 (755)
T ss_dssp SSEEEEEESSCGGGSCSCSTTCTTSCHHHHTTBCCHHHHHHHHHHHHHHHT
T ss_pred cCCEEEcCCCCcCCCCHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999998654 26788888888877664
No 12
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A
Probab=100.00 E-value=1.8e-42 Score=405.73 Aligned_cols=312 Identities=16% Similarity=0.211 Sum_probs=240.0
Q ss_pred ceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 004263 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (765)
Q Consensus 2 ~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~r 81 (765)
+|||++|||+ .+|++|+++|.+|+||.++|+++.++.+++.++.|+++|||+||||||+|.|++.++...|+++-
T Consensus 465 tt~VGSfPRp---~~L~~aR~~~~~G~is~~el~~~~~~aI~~vV~~Qe~~GLdvvtDGE~~R~d~v~~F~e~L~G~~-- 539 (789)
T 3ppg_A 465 TTTIGSFPQT---KDIRINRNKFAKGQITAEEYEAFINKEIETVVRFQEEIGLDVLVHGEPERNDMVQYFGEQLNGFA-- 539 (789)
T ss_dssp BBCCSCCCCC---HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHTCSBBCCCCTTCSCTTHHHHTTSEEEE--
T ss_pred eccccCcCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCccchhHHHHHHHhCCCee--
Confidence 4677779999 99999999999999999999999999999999999999999999999999999888776665541
Q ss_pred ccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHc-CCCCceEeehHHH
Q 004263 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (765)
Q Consensus 82 f~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~-g~~~K~vl~GP~T 160 (765)
| ...+..++|+++| |..|.+.|+..+ ..+..+++|++++++ +.++|.+||||+|
T Consensus 540 ~----------------------~~~g~vq~~g~r~-~~~p~i~G~V~~--~~p~~v~~~~~~qs~t~~pvK~~L~gP~t 594 (789)
T 3ppg_A 540 F----------------------TTNGWVQSYGSRY-VRPPIIVGDVSR--PKAMTVKESVYAQSITSKPMKGMLTGPVT 594 (789)
T ss_dssp C----------------------CSSCCEEEETTEE-ECCCEEEEEEEC--CSCSSHHHHHHHHHTCSSCBEEEEECHHH
T ss_pred E----------------------ecCcceEecCCcc-ccCCeeeccCCC--CCCCcHHHHHHHHhhccCCCceeccchHh
Confidence 1 0112345666644 778999987543 434449999999997 5789999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCCh----H---HHHHHHHHHHHHHccC
Q 004263 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDS----H---KLQAFSDAYSELQSSL 233 (765)
Q Consensus 161 ~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~----~---~~~~~~~~y~~l~~~~ 233 (765)
++.++.+ ..| .++.+++.+|+.+|++++++|+++||++||||||+|...++. + ..+.+.++++...++.
T Consensus 595 i~~~s~~-r~~---~~~ee~~~dlA~A~r~Ei~~L~~AG~r~IQiDEPal~e~l~~r~g~d~~~~l~~av~a~n~a~~g~ 670 (789)
T 3ppg_A 595 ILRWSFP-RDD---VSGKIQALQLGLALRDEVNDLEGAGITVIQVDEPAIREGLPLRAGKERSDYLNWAAQSFRVATSGV 670 (789)
T ss_dssp HHHTSBC-CSS---SCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTGGGSCSSSSHHHHHHHHHHHHHHHHHHSSS
T ss_pred Hhhhhcc-ccC---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhhcccccccCCHHHHHHHHHHHHHHHHhcC
Confidence 9988875 344 378999999999999999999999999999999999764431 2 2344556666655555
Q ss_pred C-CCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCC-CCCEEEEEEeeCCCCCcCCHHHHHHHHH
Q 004263 234 S-GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFP-LGKYLFAGVVDGRNIWANDLASSLTTLQ 311 (765)
Q Consensus 234 ~-~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p-~~k~l~lGvVdgrn~~~ed~~~~~~~l~ 311 (765)
+ .+.|++|.|+|++ .. +.+.+++ ||+|+||| ..+.++++|.. |+ .++.|++||||+++..+|++++++++|+
T Consensus 671 p~d~~I~tHiC~Gnf-~~--~~I~~l~-aD~islE~-~~Rs~~e~L~~-~~~~~k~V~lGVvds~sp~vEs~EeV~~rI~ 744 (789)
T 3ppg_A 671 ENSTQIHSHFCYSDL-DP--NHIKALD-ADVVSIEF-SKKDDPNYIQE-FSEYPNHIGLGLFDIHSPRIPSKQEFVSRIE 744 (789)
T ss_dssp CTTSEEEEECC---C-CH--HHHHHHC-CSEEEEC----------CGG-GGGCCSEEEEC-------CCCCHHHHHHHHH
T ss_pred CCCcEEEEeccCCCC-Ch--hHHHhCC-CCEEEEec-CCCcchHHHHH-HHhcCCeEEeeeecCCCCCCCCHHHHHHHHH
Confidence 4 3589999999999 55 8899999 99999998 43334555553 44 3689999999999999999999999999
Q ss_pred HHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHcc
Q 004263 312 DLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (765)
Q Consensus 312 ~~~~~~~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~ 369 (765)
++++++|+++|||||||||...+++ -|.+||+.|+..|+.++
T Consensus 745 ~a~~~v~~erL~lsPdCGl~t~~~~----------------~a~akL~~mveaAk~lR 786 (789)
T 3ppg_A 745 EILKVYPASKFWVNPDCGLKTRGWP----------------EVKESLTNMVEAAKEFR 786 (789)
T ss_dssp HHTTTSCGGGEEECCSCC---CCHH----------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcccEEEeCCCCCCCCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999977654 49999999999998764
No 13
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=99.65 E-value=1.3e-15 Score=167.06 Aligned_cols=202 Identities=14% Similarity=0.055 Sum_probs=160.3
Q ss_pred hhHHHHHHhcc-CCCceEeeechhHHhhhccc-c--CCC---------C---HHHHHHHHHHHHHHHHHHHHHcCCcEEE
Q 004263 540 VFWSSMAQSMT-KRPMKGMLTGPVTILNWSFV-R--NDQ---------P---RFETCYQIALAIKDEVEDLEKAGITVIQ 603 (765)
Q Consensus 540 ~~~~~~a~~~t-~~~vK~~ltGPvTll~~s~~-~--~~~---------~---~~e~~~~la~al~~ev~~L~~aG~~~IQ 603 (765)
++.++.+++.. +.|+++.+.||+|++..... . .+. . ..++++.++.++.+.++.+.++|+++||
T Consensus 132 ~ea~~~l~~~~~~~~l~g~~~~P~tla~~l~~gg~s~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~~~~~~~~aGad~i~ 211 (359)
T 2inf_A 132 LETIKLLVNEQLNVPLIGFSGAPFTLASYMTEGGPSKNYNKTKAFMYSMPDAWNLLMSKLADMIIVYVKAQIKAGAKAIQ 211 (359)
T ss_dssp HHHHHHHHHHTCSSCEEEEEECHHHHHHHHHHCSCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHhCCcceEEEcCcHHHHHHHHHcCCCcccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 34455555433 46899999999999876541 1 111 1 2478999999999999999999999999
Q ss_pred ecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCC-CceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHH
Q 004263 604 IDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQD-TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSV 682 (765)
Q Consensus 604 iDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~-~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~ 682 (765)
|++| +... .+++.|.+++...++++++.++. +..+..|+| |+ ..+++.+.++++|++++|.. .+++.++.
T Consensus 212 i~D~-~~~~-----lsp~~f~ef~~p~~~~i~~~i~~~g~~~i~~~~-G~-~~~l~~l~~~g~d~~~~d~~-~d~~~~~~ 282 (359)
T 2inf_A 212 IFDS-WVGA-----LNQADYRTYIKPVMNRIFSELAKENVPLIMFGV-GA-SHLAGDWHDLPLDVVGLDWR-LGIDEARS 282 (359)
T ss_dssp EECT-TGGG-----SCHHHHHHHTHHHHHHHHHHHGGGCSCEEEECT-TC-GGGHHHHHTSSCSEEECCTT-SCHHHHHH
T ss_pred EeCC-cccc-----CCHHHHHHHhHHHHHHHHHHHHHcCCcEEEEcC-Cc-HHHHHHHHHhCCCEEEeCCC-CCHHHHHH
Confidence 9999 4332 46789999999999999998864 356677766 88 78999999999999999853 35555444
Q ss_pred hhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCC--CcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 004263 683 FREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLES--NILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQ 760 (765)
Q Consensus 683 ~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~--~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r~~ 760 (765)
. . ++.+..|.+|. +....++|+|.++++++++. +. ...++||+||+..-++ .++|++|+++++.+++.
T Consensus 283 ~-g----~~~~l~Gnldp-~~l~~t~e~I~~~v~~~l~~-~~~~~g~Il~~gcgi~~~~~---~enl~a~ve~v~~~~~~ 352 (359)
T 2inf_A 283 K-G----ITKTVQGNLDP-SILLAPWEVIEQKTKEILDQ-GMESDGFIFNLGHGVFPDVS---PEVLKKLTAFVHEYSQN 352 (359)
T ss_dssp T-T----CCSEEECCBCG-GGGGSCHHHHHHHHHHHHHH-HTTSSCEEBCBSSCCCTTSC---HHHHHHHHHHHHHHHHH
T ss_pred c-C----CCEEEEecCCh-HHhcCCHHHHHHHHHHHHHh-CCCCCCeEEeCCCCCCCCcC---HHHHHHHHHHHHHhhhh
Confidence 3 3 56799999999 56688999999999999998 65 3799999999987555 89999999999998764
No 14
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=99.59 E-value=5.4e-15 Score=161.87 Aligned_cols=199 Identities=13% Similarity=0.079 Sum_probs=156.7
Q ss_pred hhHHHHHHhcc--CCCceEeeechhHHhhhccc----cCC--------CC---HHHHHHHHHHHHHHHHHHHHHcCCcEE
Q 004263 540 VFWSSMAQSMT--KRPMKGMLTGPVTILNWSFV----RND--------QP---RFETCYQIALAIKDEVEDLEKAGITVI 602 (765)
Q Consensus 540 ~~~~~~a~~~t--~~~vK~~ltGPvTll~~s~~----~~~--------~~---~~e~~~~la~al~~ev~~L~~aG~~~I 602 (765)
.+.++.+++.. +.|+++.+.||+|++..... ++. .. ..++++.++.++.+.++.+.++|+++|
T Consensus 131 ~e~~~~l~~~~~~~~~~~g~~~~P~tla~~l~~g~~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~~~aGad~i 210 (353)
T 1j93_A 131 GEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALLQKFATSMAKYIRYQADSGAQAV 210 (353)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEECHHHHHHHHHHSBCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHhCCCceEEEecChHHHHHHHHHcCCCcccHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 45555565443 36899999999999875542 111 01 247899999999999999999999999
Q ss_pred EecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCC---CceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhh
Q 004263 603 QIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQD---TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKL 679 (765)
Q Consensus 603 QiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~---~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~ 679 (765)
||++|. ... .+++.|.+++...++++++.++. +.. .+|.|.|. ..+++.+.++++|++++|.. .+++.
T Consensus 211 qi~D~~-~~~-----lsp~~f~ef~~p~~~~i~~~i~~~~~~~~-~ih~c~g~-~~~l~~l~~~g~d~~~~d~~-~d~~~ 281 (353)
T 1j93_A 211 QIFDSW-ATE-----LSPVDFEEFSLPYLKQIVDSVKLTHPNLP-LILYASGS-GGLLERLPLTGVDVVSLDWT-VDMAD 281 (353)
T ss_dssp EEECGG-GGG-----SCHHHHHHHTHHHHHHHHHHHHHHSTTCC-EEEECSSC-TTTGGGGGGGCCSEEECCTT-SCHHH
T ss_pred EEeCcc-ccc-----CCHHHHHHHhHHHHHHHHHHHHHhCCCCC-EEEECCCh-HHHHHHHHhcCCCEEEeCCC-CCHHH
Confidence 999994 332 46788999999999999988852 344 47999655 56899999999999999953 35554
Q ss_pred HHH-hhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHH
Q 004263 680 LSV-FREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKL 756 (765)
Q Consensus 680 L~~-~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~ 756 (765)
++. +. ++.+..|.+|. +....++|+|.++++++++.++.+..++||+||+..-++ .+++++|+++++.
T Consensus 282 ~~~~~g-----~~~~l~Gnldp-~~l~~~~e~i~~~v~~~l~~~~~~g~I~~~g~gi~~~~~---~enl~a~ve~v~~ 350 (353)
T 1j93_A 282 GRRRLG-----PNVAIQGNVDP-GVLFGSKEFITNRINDTVKKAGKGKHILNLGHGIKVGTP---EENFAHFFEIAKG 350 (353)
T ss_dssp HHHHTC-----SSSEEECCBCG-GGGGSCHHHHHHHHHHHHHHHCSSSEEBCBSSCCCTTCC---HHHHHHHHHHHHT
T ss_pred HHHHcC-----CCeEEEecCCH-HHHcCCHHHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCC---HHHHHHHHHHHHH
Confidence 443 22 45799999999 566889999999999999998878999999999986555 8999999999875
No 15
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=99.47 E-value=6.6e-13 Score=145.28 Aligned_cols=205 Identities=12% Similarity=0.049 Sum_probs=158.8
Q ss_pred hhHHHHHHhcc--CCCceEeeechhHHhhhccc----cCC--------CC---HHHHHHHHHHHHHHHHHHHHHcCCcEE
Q 004263 540 VFWSSMAQSMT--KRPMKGMLTGPVTILNWSFV----RND--------QP---RFETCYQIALAIKDEVEDLEKAGITVI 602 (765)
Q Consensus 540 ~~~~~~a~~~t--~~~vK~~ltGPvTll~~s~~----~~~--------~~---~~e~~~~la~al~~ev~~L~~aG~~~I 602 (765)
++.++.+++.. +.|+.+.+.||+|++.+... ++. .. ..++++.++..+.+.++.+.++|+++|
T Consensus 125 ~eai~~l~~~~~~~~plig~~~~P~tla~~l~~g~~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~~~aGad~i 204 (354)
T 3cyv_A 125 MNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAV 204 (354)
T ss_dssp HHHHHHHHHHTTTSSCEEEEEECHHHHHHHHHHSSCCSSCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHhCCCeeEEEeCCcHHHHHHHHhCCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 34455554333 36899999999999976542 111 12 246788999999999999999999999
Q ss_pred EecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCC-----ceEEEEeccCChhHHHHHHHcCCccEEEEecCCCCh
Q 004263 603 QIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDT-----TQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDE 677 (765)
Q Consensus 603 QiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~-----~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~ 677 (765)
||.+|... . .+++.|.+++...++++++.++.. .. ++|.|.|. ..+++.+.++++|++++|. ..++
T Consensus 205 ~i~d~~~~-~-----lsp~~f~ef~~p~~k~i~~~i~~~~~~~~~~-ii~~~~g~-~~~l~~l~~~g~d~i~~d~-~~dl 275 (354)
T 3cyv_A 205 MIFDTWGG-V-----LTGRDYQQFSLYYMHKIVDGLLRENDGRRVP-VTLFTKGG-GQWLEAMAETGCDALGLDW-TTDI 275 (354)
T ss_dssp EEECTTGG-G-----SCHHHHHHHTHHHHHHHHHHSCSEETTEECC-EEEECTTT-TTTHHHHHTTSCSEEECCT-TSCH
T ss_pred EEeCCccc-c-----CCHHHHHHHhHHHHHHHHHHHHHhcCCCCCC-EEEECCCH-HHHHHHHHhcCCCEEEeCC-CCCH
Confidence 99887533 2 478899999999999999998742 33 67778454 7899999999999999985 2355
Q ss_pred hhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCCChhhHHHHHHHHHHHHHH
Q 004263 678 KLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLES-NILWVNPDCGLKTRKYSEVKPALSNMVAAAKL 756 (765)
Q Consensus 678 ~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~-~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~ 756 (765)
+.++..-. ++.+..|.+|.. ....++|+|.+.++++++.++. ...++||+||+..-++ .++++.|+++++.
T Consensus 276 ~~~~~~~g----~~~~l~Gn~dp~-~l~~t~e~i~~~v~~~l~~~g~~~g~I~~~g~gi~~~~p---~env~a~v~~v~~ 347 (354)
T 3cyv_A 276 ADARRRVG----NKVALQGNMDPS-MLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVP---PEHAGVFVEAVHR 347 (354)
T ss_dssp HHHHHHHT----TTSEEECCBCGG-GGGSCHHHHHHHHHHHHTTTTTSSCEEBCBSSCCCTTSC---HHHHHHHHHHHHH
T ss_pred HHHHHHhC----CCeEEEecCChH-HhCCCHHHHHHHHHHHHHHhCCCCCeEEecCCCCCCCCC---HHHHHHHHHHHHH
Confidence 44433212 467899999984 4478999999999999998775 5899999999988666 8899999999998
Q ss_pred HHHHH
Q 004263 757 LRTQL 761 (765)
Q Consensus 757 ~r~~~ 761 (765)
+.+++
T Consensus 348 ~~~~~ 352 (354)
T 3cyv_A 348 LSEQY 352 (354)
T ss_dssp HHGGG
T ss_pred HhHHh
Confidence 87654
No 16
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=99.44 E-value=2.9e-12 Score=140.93 Aligned_cols=194 Identities=15% Similarity=0.123 Sum_probs=154.7
Q ss_pred CCCceEeeechhHHhhhcc--c--cCC--------CC---HHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCC
Q 004263 551 KRPMKGMLTGPVTILNWSF--V--RND--------QP---RFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPL 615 (765)
Q Consensus 551 ~~~vK~~ltGPvTll~~s~--~--~~~--------~~---~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l 615 (765)
+.|+.+.+.||+|++.... . ++. .. ..++++.++..+.+.++...++|+++|||.++.- ..
T Consensus 148 ~~plig~~~~P~tla~~l~egg~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~i~aGad~i~i~D~~~-~~--- 223 (367)
T 1r3s_A 148 RVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHA-GH--- 223 (367)
T ss_dssp SSCEEEEEECHHHHHHHHHHSSCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTG-GG---
T ss_pred CccEEEEcCcHHHHHHHHHcCCCcccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCcc-cc---
Confidence 4689999999999997654 1 110 01 2467888999999999999999999999999843 22
Q ss_pred CCCCHHHHHHHHHHHHHHHHccCC-C-------CceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHHhhhcc
Q 004263 616 RKSEQDFYLKWAVHSFRITNCGVQ-D-------TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGV 687 (765)
Q Consensus 616 ~~~~~~~~l~~~v~a~~~~~~~v~-~-------~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~ 687 (765)
.+++.|.+++...++++++.++ . +..+++|+| |. ..+++.+.++++|++++|. ..+++.++..-.
T Consensus 224 --lsp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~-G~-~~~l~~l~~~g~d~i~~d~-~~dl~~a~~~~g-- 296 (367)
T 1r3s_A 224 --LGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAK-DG-HFALEELAQAGYEVVGLDW-TVAPKKARECVG-- 296 (367)
T ss_dssp --SCHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEET-TC-GGGHHHHTTSSCSEEECCT-TSCHHHHHHHHC--
T ss_pred --CCHHHHHHHhHHHHHHHHHHHhhhhccccCCCCCeEEEcC-Cc-HHHHHHHHhcCCCEEEeCC-CCCHHHHHHHcC--
Confidence 4788899999999999988776 1 467889988 66 6799999999999999985 235443332211
Q ss_pred cCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 004263 688 KYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQL 761 (765)
Q Consensus 688 ~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r~~~ 761 (765)
++....|.+|. +....++|+|.+.++++++.++....++|++||+..-++ .+++++|+++++...+++
T Consensus 297 --~~~~l~Gnldp-~~L~gt~e~i~~~v~~~l~~~g~~g~I~~~ghgi~~~~p---~env~a~v~~v~~~~~~~ 364 (367)
T 1r3s_A 297 --KTVTLQGNLDP-CALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMD---PEHVGAFVDAVHKHSRLL 364 (367)
T ss_dssp --SSSEEEEEECG-GGGGSCHHHHHHHHHHHHHHHCSSSEEEEESSCCCTTCC---HHHHHHHHHHHHHHHHHH
T ss_pred --CCeEEEeCCCh-HHhcCCHHHHHHHHHHHHHHhCCCCeeecCCCCCCCCCC---HHHHHHHHHHHHHHHHHh
Confidence 45688999998 455789999999999999987767899999999988666 889999999999987765
No 17
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=99.39 E-value=4.9e-12 Score=137.53 Aligned_cols=198 Identities=17% Similarity=0.138 Sum_probs=153.2
Q ss_pred hHHHHHHh-ccCCCceEeeechhHHhhhccc-c--CCC---------C---HHHHHHHHHHHHHHHHHHHHHcCCcEEEe
Q 004263 541 FWSSMAQS-MTKRPMKGMLTGPVTILNWSFV-R--NDQ---------P---RFETCYQIALAIKDEVEDLEKAGITVIQI 604 (765)
Q Consensus 541 ~~~~~a~~-~t~~~vK~~ltGPvTll~~s~~-~--~~~---------~---~~e~~~~la~al~~ev~~L~~aG~~~IQi 604 (765)
+.++.+++ +.+.|+.+.+.||+|++..... + .+. . ..++++.++..+.+.++.+.++|+++||+
T Consensus 119 eai~~l~~~~~~~plig~~~~P~tla~~l~egg~~~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~~~~~~~~aGad~i~i 198 (338)
T 2eja_A 119 EIIKRVKEAQDEVPVIGFAGAPFTLLSYLIEGGASKDFKSTKLFMWENPKEYKRLMDILTETVLAYLKEQIKAGADVVQI 198 (338)
T ss_dssp HHHHHHHHHCCSSCEEEEEECHHHHHHHHHHTSCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhcCccEEEecchHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 44444443 3347899999999999876541 1 111 1 24688899999999999999999999999
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCC--CceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHH
Q 004263 605 DEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQD--TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSV 682 (765)
Q Consensus 605 DEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~--~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~ 682 (765)
.+|.-. . .+++.|.+++...++++++.++. +..+..|+| |+ ..+++.+.++++|++++|.. .+++.
T Consensus 199 ~d~~~~-~-----lsp~~f~ef~~p~~k~i~~~i~~~~g~~~i~~~~-g~-~~~l~~l~~~g~d~~~~d~~-~dl~~--- 266 (338)
T 2eja_A 199 FDSWVN-N-----LSLEDYGEYVYPYVNYLISELKDFSDTPVIYFFR-GS-SSFIDLAVDYRADALSVDWS-VDIPE--- 266 (338)
T ss_dssp EETTGG-G-----SCHHHHHHHTHHHHHHHHHHHHHHCCCCEEEEES-SH-HHHHHHHTTSCCSEEECCTT-SCHHH---
T ss_pred ecCccc-c-----CCHHHHHHHhHHHHHHHHHHHhhcCCCCEEEEcC-Cc-HHHHHHHHHcCCCEEEeCCC-CCHHH---
Confidence 998543 1 46788999999999999887742 466788877 77 78999999999999999852 24432
Q ss_pred hhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHH
Q 004263 683 FREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLES-NILWVNPDCGLKTRKYSEVKPALSNMVAAAKLL 757 (765)
Q Consensus 683 ~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~-~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~ 757 (765)
.++ .+ +....|.+|. +....++|+|.+.++++++.++. ...++||+||+..-++ .+++++|+++++..
T Consensus 267 ~~~--~~-~~~l~Gn~dp-~~l~gt~e~i~~~v~~~l~~~g~~~g~I~~~g~gi~~~~p---~en~~a~v~~v~~~ 335 (338)
T 2eja_A 267 LFK--IY-DKGFQGNLEP-AVLYASEEVIEEKTLGLLRRIPVKTRYVFNLGHGLAPDME---LEKVKYLVDLVKSF 335 (338)
T ss_dssp HHH--HC-CSEEECCBCG-GGGGSCHHHHHHHHHHHHTTCCCSSSEEBCBSSCCCTTSC---HHHHHHHHHHHHTC
T ss_pred HHH--hC-CeEEEECCCH-HHhcCCHHHHHHHHHHHHHHhCCCCCeEEeCCCCCCCCCC---HHHHHHHHHHHHHh
Confidence 222 13 5788999998 45578999999999999998775 5899999999987666 88999999998753
No 18
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=99.34 E-value=2.9e-11 Score=131.92 Aligned_cols=190 Identities=17% Similarity=0.177 Sum_probs=147.0
Q ss_pred CCCceEeeechhHHhhhccccCC-------C--CHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHH
Q 004263 551 KRPMKGMLTGPVTILNWSFVRND-------Q--PRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQD 621 (765)
Q Consensus 551 ~~~vK~~ltGPvTll~~s~~~~~-------~--~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~ 621 (765)
+.|+-|.+.||+|++........ . ...++++.++..+.+.++...++|+++|||-++.-...+ .+++
T Consensus 147 ~~pligf~g~P~Tla~~l~~~~~~~~~~~~~pe~~~~ll~~i~~~~~~~~~~qi~aGad~i~i~D~~a~~~~----lsp~ 222 (348)
T 4ay7_A 147 DVPIVGGMEGPVTVASDLVSVKSFMKWSIKKTDLLEQALDIATEASIIYANAMVEAGADVIAIADPVASPDL----MSPD 222 (348)
T ss_dssp TSCEEEEEECHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECGGGSTTT----SCHH
T ss_pred CeeEEEeccchHHHHHhcccchHHHHHHHHChHhHHHHHHHHHHHHHHHHHHHHhcCCCcceeecccccccc----CCHH
Confidence 36899999999999865432111 0 124677888889999999999999999999998654321 4688
Q ss_pred HHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHHhhhcccCCceeccccccCC
Q 004263 622 FYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIH 701 (765)
Q Consensus 622 ~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~ 701 (765)
.|.+++...++++++.++. ...+|+| |+.+.+++.+.++++|++++|..-.+++..+..-. ++....|.+|..
T Consensus 223 ~f~~f~~p~~k~i~~~~~~--~~iih~~-g~~~~~l~~~~~~g~d~i~~d~~~~~~~~~k~~~g----~~~~l~Gnldp~ 295 (348)
T 4ay7_A 223 SFRQFLKSRLQKFASSVNS--VTVLHIC-GNVNPILSDMADCGFEGLSVEEKIGSAKKGKEVIG----TRARLVGNVSSP 295 (348)
T ss_dssp HHHHHHHHHHHHHHHHSSS--EEEEECC-SCCHHHHHHHHTSCCSEEECCGGGCCHHHHHHHHT----TSSEEEEEECCC
T ss_pred HHHHHhhHHHHHHHhhccC--CcEEEec-CCcHHHHHHHHHhccccccccchhhHHHHHHHHhC----CCEEEEcCCCCh
Confidence 9999999999999999873 4578999 88888999999999999999953334443333221 345567999875
Q ss_pred CC-CCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHH
Q 004263 702 SP-RIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLL 757 (765)
Q Consensus 702 s~-~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~ 757 (765)
.. ...++|+|.+.++++++. ...++||+||+..-++ .++++.|++|++..
T Consensus 296 ~~l~~g~~e~i~~~v~~~l~~---~g~I~~~Ghgi~p~tp---~env~a~v~av~ey 346 (348)
T 4ay7_A 296 FTLLPGPVDKIKAEAKEALEG---GIDVLAPGCGIAPMTP---LENVKALVAARDEF 346 (348)
T ss_dssp CCCTTCCHHHHHHHHHHHHHT---TCSEEEESSSCCTTCC---HHHHHHHHHHHHHH
T ss_pred HhhcCCCHHHHHHHHHHHHhC---CCCEEeCCCccCCCCC---HHHHHHHHHHHHHh
Confidence 43 456899999999999873 4568999999998777 78899999999864
No 19
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=99.27 E-value=9.7e-11 Score=128.68 Aligned_cols=287 Identities=12% Similarity=0.096 Sum_probs=190.4
Q ss_pred cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCC-eEEeccceeeecCCc
Q 004263 443 TMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSG-FAFTVNGWVQSYGSR 521 (765)
Q Consensus 443 ~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G-~~~~~~g~~~~~~t~ 521 (765)
.+|.++.|+.+ | |-.++..--+.+.+-.++-.+..|+|.+.-. .|.. ...+.++. +.+..+. |..
T Consensus 38 lpey~~~r~~~--~--~f~~~~~~pe~~ae~tl~~~~~~~~Da~i~f----sDi~-~~~ea~G~~v~~~~~~-----gP~ 103 (368)
T 4exq_A 38 LPEYNATRARA--G--SFLGLAKHPDYATEVTLQPLERFPLDAAILF----SDIL-TIPDAMGLGLDFAAGE-----GPK 103 (368)
T ss_dssp SHHHHHHHHHH--S--SHHHHHHSHHHHHHHHHHHHHHSCCSCEECC----CCTT-HHHHHTTTCEEC---------CCE
T ss_pred cHHHHHHHhcC--C--CHHHHHcCHHHHHHHHHHHHHHhCCCEEEec----cccc-hhHHHcCCeEEeCCCC-----CCC
Confidence 35666555554 1 4455555556677788888899999976543 2432 23333321 2221110 110
Q ss_pred eeeCcEEE--ccCCC---Ccc-----cchhHHHHHH-hccC------CCceEeeechhHHhhhcccc---CCC-------
Q 004263 522 CVKPPIIY--GDVSR---PKA-----MTVFWSSMAQ-SMTK------RPMKGMLTGPVTILNWSFVR---NDQ------- 574 (765)
Q Consensus 522 ~~~~P~i~--g~i~~---~~p-----~~~~~~~~a~-~~t~------~~vK~~ltGPvTll~~s~~~---~~~------- 574 (765)
+..| |. .|+.. +.+ ..++.++.++ ++.+ .|+-+.+.||+|++...... .+.
T Consensus 104 -~~~p-i~~~~d~~~l~~~~~~~~l~~v~eai~~l~~~l~~~~~~~~vpligf~gaP~Tla~~l~~g~~s~~~~~~~~~~ 181 (368)
T 4exq_A 104 -FAHP-VRTEADVAKLAVPDIGATLGYVTDAVREIRRALTDGEGRQRVPLIGFSGSPWTLACYMVEGGGSDDFRTVKSMA 181 (368)
T ss_dssp -ESSC-CCSHHHHHTCCCCCHHHHSHHHHHHHHHHHHHTBCTTSCBSSCEEEEEECHHHHHHHHHHTBCCSSCHHHHHHH
T ss_pred -CCCC-CCCHHHHHhccCCChhHHHHHHHHHHHHHHHHhCCcCcccceeEEEeCCcHHHHHHHHHcCCCcchHHHHHHHH
Confidence 1112 11 11211 111 1134444443 3333 68999999999998754321 111
Q ss_pred --C---HHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCC-----CceE
Q 004263 575 --P---RFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQD-----TTQV 644 (765)
Q Consensus 575 --~---~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~-----~~~I 644 (765)
. ..++++.++..+.+.++...++|++.|||-++. ... .+++.|.+++...++++++.++. ...+
T Consensus 182 ~~~Pe~~~~ll~~i~~~~~~y~~~qi~aGad~i~ifDs~-~~~-----Lsp~~f~ef~~Py~k~i~~~l~~~~~g~~~pv 255 (368)
T 4exq_A 182 YARPDLMHRILDVNAQAVAAYLNAQIEAGAQAVMIFDTW-GGA-----LADGAYQRFSLDYIRRVVAQLKREHDGARVPA 255 (368)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEETT-GGG-----SCTTHHHHHTHHHHHHHHHTSCCEETTEECCE
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCc-ccc-----CCHHHHHHHhHHHHHHHHHHHHHhcCCCCCcE
Confidence 1 256888899999999999999999999987654 322 45678999999999999999875 2556
Q ss_pred EEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCC
Q 004263 645 HTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLES 724 (765)
Q Consensus 645 ~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~ 724 (765)
+.|+| |. ..+++.+.++++|++++|.. .+++..+..-. ++....|.+|... ...++|+|.+.++++++..+.
T Consensus 256 i~f~~-g~-~~~l~~l~~~g~d~i~~d~~-~dl~~ak~~~g----~~~~l~Gnldp~~-L~gt~e~I~~~v~~~l~~~g~ 327 (368)
T 4exq_A 256 IAFTK-GG-GLWLEDLAATGVDAVGLDWT-VNLGRARERVA----GRVALQGNLDPTI-LFAPPEAIRAEARAVLDSYGN 327 (368)
T ss_dssp EEEET-TC-GGGHHHHHTSSCSEEECCTT-SCHHHHHHHHT----TSSEEEEEECGGG-GGSCHHHHHHHHHHHHHHHCS
T ss_pred EEEcC-Cc-HHHHHHHHHhCCCEEeeCCC-CCHHHHHHHhC----CCEEEEECCCHHH-hCCCHHHHHHHHHHHHHHhCC
Confidence 55655 65 57889999999999999853 25544333221 4567789999864 468999999999999998874
Q ss_pred -CcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 004263 725 -NILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLA 762 (765)
Q Consensus 725 -~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r~~~~ 762 (765)
...++|++||+..-++ .++++.|+++++.....+.
T Consensus 328 ~~g~I~n~Ghgi~p~tp---~Env~a~veav~~~~~~~~ 363 (368)
T 4exq_A 328 HPGHVFNLGHGISQFTP---PEHVAELVDEVHRHSRAIR 363 (368)
T ss_dssp CSCEEEEESSCCCTTCC---HHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEeCCCCCCCCcC---HHHHHHHHHHHHHhCHHhh
Confidence 6799999999988776 7899999999999877653
No 20
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=99.01 E-value=2.3e-09 Score=117.11 Aligned_cols=183 Identities=11% Similarity=0.098 Sum_probs=132.6
Q ss_pred cchHHHHHHHH-c--CCCCceEeehHHHHhh-hcc--CC--------CCcCCCCCH---HHHHHHHHHHHHHHHHHHHHc
Q 004263 136 KAVQEYKEAKA-L--GMETVPVLVGPVSYLL-LSK--PA--------KGVEKSFSL---LSLIDKIIPVYKEVVAELKAA 198 (765)
Q Consensus 136 ~~~~e~~~a~~-~--g~~~K~vl~GP~T~l~-l~~--~~--------~~y~~~~~~---~~ll~~L~~~y~~~l~~L~~~ 198 (765)
.+++.++.+++ + +.+++..+.||+|++. +-. .+ ..|. ++ .++++.+++++.+.++.+.++
T Consensus 129 ~v~e~~~~l~~~~~~~~~~~g~~~~P~tla~~l~~g~~~~~~~~~~~~~~~---~Pe~~~~ll~~l~~~~~~~~~~~~~a 205 (353)
T 1j93_A 129 YVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFA---EPKVLHALLQKFATSMAKYIRYQADS 205 (353)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEECHHHHHHHHHHSBCCSSCHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCceEEEecChHHHHHHHHHcCCCcccHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666654 3 3567889999999873 311 01 1121 23 479999999999999999999
Q ss_pred CCCeEEeeccccccCCChHH-----HHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCC
Q 004263 199 GATWIQFDEPTLVLDLDSHK-----LQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTK 273 (765)
Q Consensus 199 G~~~VQiDEP~L~~d~~~~~-----~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~ 273 (765)
||+.|||+|| |+.-+++++ +..+++..+.+.+..+...+ +|.| |+. ...++.+.+++ +|++++|.. .
T Consensus 206 Gad~iqi~D~-~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~~~~~-ih~c-~g~-~~~l~~l~~~g-~d~~~~d~~---~ 277 (353)
T 1j93_A 206 GAQAVQIFDS-WATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPL-ILYA-SGS-GGLLERLPLTG-VDVVSLDWT---V 277 (353)
T ss_dssp TCSEEEEECG-GGGGSCHHHHHHHTHHHHHHHHHHHHHHSTTCCE-EEEC-SSC-TTTGGGGGGGC-CSEEECCTT---S
T ss_pred CCCEEEEeCc-ccccCCHHHHHHHhHHHHHHHHHHHHHhCCCCCE-EEEC-CCh-HHHHHHHHhcC-CCEEEeCCC---C
Confidence 9999999999 555566554 23334444445331112233 3556 444 56789999999 999999874 3
Q ss_pred ChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 004263 274 TLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (765)
Q Consensus 274 ~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~ 331 (765)
+++.+++.++ +|....|-||. ..-..+.+++.+.++++++.++..+.+++|+||+.
T Consensus 278 d~~~~~~~~g-~~~~l~Gnldp-~~l~~~~e~i~~~v~~~l~~~~~~g~I~~~g~gi~ 333 (353)
T 1j93_A 278 DMADGRRRLG-PNVAIQGNVDP-GVLFGSKEFITNRINDTVKKAGKGKHILNLGHGIK 333 (353)
T ss_dssp CHHHHHHHTC-SSSEEECCBCG-GGGGSCHHHHHHHHHHHHHHHCSSSEEBCBSSCCC
T ss_pred CHHHHHHHcC-CCeEEEecCCH-HHHcCCHHHHHHHHHHHHHHhCCCCEEEeCCCCCC
Confidence 6777776575 47789999999 67789999999999999998887789999999984
No 21
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=99.00 E-value=1.3e-08 Score=111.39 Aligned_cols=178 Identities=15% Similarity=0.132 Sum_probs=131.3
Q ss_pred chHHHHHHHH-c-CCCCceEeehHHHHhh-hc--cCCCC--------cCCCCCH---HHHHHHHHHHHHHHHHHHHHcCC
Q 004263 137 AVQEYKEAKA-L-GMETVPVLVGPVSYLL-LS--KPAKG--------VEKSFSL---LSLIDKIIPVYKEVVAELKAAGA 200 (765)
Q Consensus 137 ~~~e~~~a~~-~-g~~~K~vl~GP~T~l~-l~--~~~~~--------y~~~~~~---~~ll~~L~~~y~~~l~~L~~~G~ 200 (765)
.++.++.+++ + +.+++..+.||+|++. +- ..++. |. ++ .++++.+++++.+.++.+.++||
T Consensus 131 ~~ea~~~l~~~~~~~~l~g~~~~P~tla~~l~~gg~s~~~~~~~~~~~~---~Pe~~~~ll~~i~~~~~~~~~~~~~aGa 207 (359)
T 2inf_A 131 VLETIKLLVNEQLNVPLIGFSGAPFTLASYMTEGGPSKNYNKTKAFMYS---MPDAWNLLMSKLADMIIVYVKAQIKAGA 207 (359)
T ss_dssp HHHHHHHHHHHTCSSCEEEEEECHHHHHHHHHHCSCCSSCHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCcceEEEcCcHHHHHHHHHcCCCcccHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555665553 3 4678889999999873 32 11111 21 33 47999999999999999999999
Q ss_pred CeEEeeccccccCCChHHH-----HHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCCh
Q 004263 201 TWIQFDEPTLVLDLDSHKL-----QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTL 275 (765)
Q Consensus 201 ~~VQiDEP~L~~d~~~~~~-----~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l 275 (765)
+.|||+|| |+.-+++++. ..+++..+.+.+. ...+++++| |+ ...++.+.+++ +|++++|.. .++
T Consensus 208 d~i~i~D~-~~~~lsp~~f~ef~~p~~~~i~~~i~~~--g~~~i~~~~-G~--~~~l~~l~~~g-~d~~~~d~~---~d~ 277 (359)
T 2inf_A 208 KAIQIFDS-WVGALNQADYRTYIKPVMNRIFSELAKE--NVPLIMFGV-GA--SHLAGDWHDLP-LDVVGLDWR---LGI 277 (359)
T ss_dssp SEEEEECT-TGGGSCHHHHHHHTHHHHHHHHHHHGGG--CSCEEEECT-TC--GGGHHHHHTSS-CSEEECCTT---SCH
T ss_pred CEEEEeCC-ccccCCHHHHHHHhHHHHHHHHHHHHHc--CCcEEEEcC-Cc--HHHHHHHHHhC-CCEEEeCCC---CCH
Confidence 99999999 6666666543 3334444444331 234555655 54 46899999999 999999864 357
Q ss_pred hhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCC--CcEEEeCCCCCc
Q 004263 276 DLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGK--DKVVVSTSCSLL 331 (765)
Q Consensus 276 ~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~--~~l~vspsC~L~ 331 (765)
+.+++ . .+|....|-||. .....+.+++.+.++++++. +. .+.+++|+||+.
T Consensus 278 ~~~~~-~-g~~~~l~Gnldp-~~l~~t~e~I~~~v~~~l~~-~~~~~g~Il~~gcgi~ 331 (359)
T 2inf_A 278 DEARS-K-GITKTVQGNLDP-SILLAPWEVIEQKTKEILDQ-GMESDGFIFNLGHGVF 331 (359)
T ss_dssp HHHHH-T-TCCSEEECCBCG-GGGGSCHHHHHHHHHHHHHH-HTTSSCEEBCBSSCCC
T ss_pred HHHHH-c-CCCEEEEecCCh-HHhcCCHHHHHHHHHHHHHh-CCCCCCeEEeCCCCCC
Confidence 77776 4 567899999999 67789999999999999987 65 379999999995
No 22
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=98.34 E-value=6.1e-06 Score=89.88 Aligned_cols=182 Identities=12% Similarity=0.065 Sum_probs=126.9
Q ss_pred chHHHHHHH-HcC--CCCceEeehHHHHhh-hc-----cCC-----CCcCCCCCH---HHHHHHHHHHHHHHHHHHHHcC
Q 004263 137 AVQEYKEAK-ALG--METVPVLVGPVSYLL-LS-----KPA-----KGVEKSFSL---LSLIDKIIPVYKEVVAELKAAG 199 (765)
Q Consensus 137 ~~~e~~~a~-~~g--~~~K~vl~GP~T~l~-l~-----~~~-----~~y~~~~~~---~~ll~~L~~~y~~~l~~L~~~G 199 (765)
.++..+.++ +++ .++...+.||+|++. +- +.- .-|. ++ .++++.++++..+.++.+.++|
T Consensus 124 v~eai~~l~~~~~~~~plig~~~~P~tla~~l~~g~~~~~~~~~~~~~~~---~Pe~~~~ll~~l~~~~~~~~~~~~~aG 200 (354)
T 3cyv_A 124 VMNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYA---DPQALHALLDKLAKSVTLYLNAQIKAG 200 (354)
T ss_dssp HHHHHHHHHHHTTTSSCEEEEEECHHHHHHHHHHSSCCSSCHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCeeEEEeCCcHHHHHHHHhCCCCCccHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345555544 343 677888999999874 32 110 1121 34 3688999999999999999999
Q ss_pred CCeEEeeccccccCCChHH-HHHHHHHHHHHHccCC------CCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCC
Q 004263 200 ATWIQFDEPTLVLDLDSHK-LQAFSDAYSELQSSLS------GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGT 272 (765)
Q Consensus 200 ~~~VQiDEP~L~~d~~~~~-~~~~~~~y~~l~~~~~------~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~ 272 (765)
++.|||.+| ++.-++++. .+.+...++++.+.+. ...+ ++.| ++. ...++.+.+++ +|++++|..
T Consensus 201 ad~i~i~d~-~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~~~i-i~~~-~g~-~~~l~~l~~~g-~d~i~~d~~--- 272 (354)
T 3cyv_A 201 AQAVMIFDT-WGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPV-TLFT-KGG-GQWLEAMAETG-CDALGLDWT--- 272 (354)
T ss_dssp CSEEEEECT-TGGGSCHHHHHHHTHHHHHHHHHHSCSEETTEECCE-EEEC-TTT-TTTHHHHHTTS-CSEEECCTT---
T ss_pred CCEEEEeCC-ccccCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCCE-EEEC-CCH-HHHHHHHHhcC-CCEEEeCCC---
Confidence 999999998 444566554 3333344444444322 1233 3334 445 56899999999 999998753
Q ss_pred CChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCC-CcEEEeCCCCCc
Q 004263 273 KTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGK-DKVVVSTSCSLL 331 (765)
Q Consensus 273 ~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~-~~l~vspsC~L~ 331 (765)
.+++..++.++ ++....|-||. .....+.+++.+.++++++.++. ...+++++||+.
T Consensus 273 ~dl~~~~~~~g-~~~~l~Gn~dp-~~l~~t~e~i~~~v~~~l~~~g~~~g~I~~~g~gi~ 330 (354)
T 3cyv_A 273 TDIADARRRVG-NKVALQGNMDP-SMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIH 330 (354)
T ss_dssp SCHHHHHHHHT-TTSEEECCBCG-GGGGSCHHHHHHHHHHHHTTTTTSSCEEBCBSSCCC
T ss_pred CCHHHHHHHhC-CCeEEEecCCh-HHhCCCHHHHHHHHHHHHHHhCCCCCeEEecCCCCC
Confidence 46776666563 56788899998 56688999999999999988775 479999999984
No 23
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=98.29 E-value=2.1e-05 Score=85.01 Aligned_cols=178 Identities=15% Similarity=0.111 Sum_probs=125.4
Q ss_pred chHHHHHHHH-c-CCCCceEeehHHHHhh-hc--cCCCC--------cCCCCCH---HHHHHHHHHHHHHHHHHHHHcCC
Q 004263 137 AVQEYKEAKA-L-GMETVPVLVGPVSYLL-LS--KPAKG--------VEKSFSL---LSLIDKIIPVYKEVVAELKAAGA 200 (765)
Q Consensus 137 ~~~e~~~a~~-~-g~~~K~vl~GP~T~l~-l~--~~~~~--------y~~~~~~---~~ll~~L~~~y~~~l~~L~~~G~ 200 (765)
.++..+.+++ + +.++...+.||+|++. +- ..++. |. ++ .++++.++++..+.++...++|+
T Consensus 117 v~eai~~l~~~~~~~plig~~~~P~tla~~l~egg~~~~~~~~~~~~~~---~Pe~~~~ll~~i~~~~~~~~~~~~~aGa 193 (338)
T 2eja_A 117 VYEIIKRVKEAQDEVPVIGFAGAPFTLLSYLIEGGASKDFKSTKLFMWE---NPKEYKRLMDILTETVLAYLKEQIKAGA 193 (338)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECHHHHHHHHHHTSCCSSCHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCccEEEecchHHHHHHHHHcCCCCccHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445555443 3 3566777889999863 32 11111 11 33 36899999999999999999999
Q ss_pred CeEEeeccccccCCChHHH-----HHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCCh
Q 004263 201 TWIQFDEPTLVLDLDSHKL-----QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTL 275 (765)
Q Consensus 201 ~~VQiDEP~L~~d~~~~~~-----~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l 275 (765)
+.||+.|| ++.-++++.. ..+++..+.+.+. +...++++++ |+ ...++.+.+++ +|++++|.. -++
T Consensus 194 d~i~i~d~-~~~~lsp~~f~ef~~p~~k~i~~~i~~~-~g~~~i~~~~-g~--~~~l~~l~~~g-~d~~~~d~~---~dl 264 (338)
T 2eja_A 194 DVVQIFDS-WVNNLSLEDYGEYVYPYVNYLISELKDF-SDTPVIYFFR-GS--SSFIDLAVDYR-ADALSVDWS---VDI 264 (338)
T ss_dssp SEEEEEET-TGGGSCHHHHHHHTHHHHHHHHHHHHHH-CCCCEEEEES-SH--HHHHHHHTTSC-CSEEECCTT---SCH
T ss_pred CEEEEecC-ccccCCHHHHHHHhHHHHHHHHHHHhhc-CCCCEEEEcC-Cc--HHHHHHHHHcC-CCEEEeCCC---CCH
Confidence 99999998 4444565532 3334444444321 1245666655 42 56889999999 999999863 467
Q ss_pred hhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCC-CcEEEeCCCCC
Q 004263 276 DLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGK-DKVVVSTSCSL 330 (765)
Q Consensus 276 ~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~-~~l~vspsC~L 330 (765)
+.+++.+ +....|-+|. ..-..+.+++.+.++++++.+|. ...++++.||+
T Consensus 265 ~~~~~~~---~~~l~Gn~dp-~~l~gt~e~i~~~v~~~l~~~g~~~g~I~~~g~gi 316 (338)
T 2eja_A 265 PELFKIY---DKGFQGNLEP-AVLYASEEVIEEKTLGLLRRIPVKTRYVFNLGHGL 316 (338)
T ss_dssp HHHHHHC---CSEEECCBCG-GGGGSCHHHHHHHHHHHHTTCCCSSSEEBCBSSCC
T ss_pred HHHHHhC---CeEEEECCCH-HHhcCCHHHHHHHHHHHHHHhCCCCCeEEeCCCCC
Confidence 7776656 5678899998 66678999999999999998775 57999999998
No 24
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=98.01 E-value=8.2e-05 Score=81.40 Aligned_cols=184 Identities=10% Similarity=0.068 Sum_probs=127.6
Q ss_pred hHHHHHHHH-c--CCCCceEeehHHHHhh-hc--cCCCCcCCC-----CCH---HHHHHHHHHHHHHHHHHHHHcCCCeE
Q 004263 138 VQEYKEAKA-L--GMETVPVLVGPVSYLL-LS--KPAKGVEKS-----FSL---LSLIDKIIPVYKEVVAELKAAGATWI 203 (765)
Q Consensus 138 ~~e~~~a~~-~--g~~~K~vl~GP~T~l~-l~--~~~~~y~~~-----~~~---~~ll~~L~~~y~~~l~~L~~~G~~~V 203 (765)
++.++.+++ + +.++...+.||+|++. +- ..+++|..- .++ .++++.++++..+.++...++|++.|
T Consensus 135 ~eai~~l~~~~~~~~plig~~~~P~tla~~l~egg~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~i~aGad~i 214 (367)
T 1r3s_A 135 FQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQAL 214 (367)
T ss_dssp HHHHHHHHHHHTTSSCEEEEEECHHHHHHHHHHSSCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHcCCCccEEEEcCcHHHHHHHHHcCCCcccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 444444442 3 4667778889999874 31 111111000 033 35789999999999999999999999
Q ss_pred EeeccccccCCChHHH-----HHHHHHHHHHH-ccCC----CCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCC
Q 004263 204 QFDEPTLVLDLDSHKL-----QAFSDAYSELQ-SSLS----GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTK 273 (765)
Q Consensus 204 QiDEP~L~~d~~~~~~-----~~~~~~y~~l~-~~~~----~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~ 273 (765)
||.+| ++.-++++.. ..+++..+.+. +..+ ...+++++| |+ ...++.+.+++ +|++++|.. .
T Consensus 215 ~i~D~-~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~-G~--~~~l~~l~~~g-~d~i~~d~~---~ 286 (367)
T 1r3s_A 215 QLFES-HAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAK-DG--HFALEELAQAG-YEVVGLDWT---V 286 (367)
T ss_dssp EEEET-TGGGSCHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEET-TC--GGGHHHHTTSS-CSEEECCTT---S
T ss_pred EEecC-ccccCCHHHHHHHhHHHHHHHHHHHhhhhccccCCCCCeEEEcC-Cc--HHHHHHHHhcC-CCEEEeCCC---C
Confidence 99998 5555666542 33344444453 2100 245667766 43 46899999999 999999853 4
Q ss_pred ChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 004263 274 TLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (765)
Q Consensus 274 ~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~ 331 (765)
++..+++.++ ++....|-+|. ..-..+.+++.+.++++++.++....++++.||+.
T Consensus 287 dl~~a~~~~g-~~~~l~Gnldp-~~L~gt~e~i~~~v~~~l~~~g~~g~I~~~ghgi~ 342 (367)
T 1r3s_A 287 APKKARECVG-KTVTLQGNLDP-CALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLY 342 (367)
T ss_dssp CHHHHHHHHC-SSSEEEEEECG-GGGGSCHHHHHHHHHHHHHHHCSSSEEEEESSCCC
T ss_pred CHHHHHHHcC-CCeEEEeCCCh-HHhcCCHHHHHHHHHHHHHHhCCCCeeecCCCCCC
Confidence 6776666564 46788899999 66788999999999999988776689999999984
No 25
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=97.41 E-value=0.0033 Score=68.64 Aligned_cols=173 Identities=12% Similarity=0.071 Sum_probs=118.2
Q ss_pred CCCceEeehHHHHhh-hc--cCCCCcCCC-----CCH---HHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChH
Q 004263 149 METVPVLVGPVSYLL-LS--KPAKGVEKS-----FSL---LSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSH 217 (765)
Q Consensus 149 ~~~K~vl~GP~T~l~-l~--~~~~~y~~~-----~~~---~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~ 217 (765)
+++-..+-||+|++. +. ..++.+..- .++ .++++.++++..+.++...++|++.|||-++ |+.-++++
T Consensus 149 vpligf~gaP~Tla~~l~~g~~s~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~y~~~qi~aGad~i~ifDs-~~~~Lsp~ 227 (368)
T 4exq_A 149 VPLIGFSGSPWTLACYMVEGGGSDDFRTVKSMAYARPDLMHRILDVNAQAVAAYLNAQIEAGAQAVMIFDT-WGGALADG 227 (368)
T ss_dssp SCEEEEEECHHHHHHHHHHTBCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEET-TGGGSCTT
T ss_pred eeEEEeCCcHHHHHHHHHcCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC-ccccCCHH
Confidence 345556679999864 31 111111000 023 4688899999999999999999999999776 45556655
Q ss_pred HHHHH-HHHHHHHHccCC------CCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEE
Q 004263 218 KLQAF-SDAYSELQSSLS------GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFA 290 (765)
Q Consensus 218 ~~~~~-~~~y~~l~~~~~------~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~l 290 (765)
+.+.| ...++++.+.+. ...++++++ | . ...++.+.+++ +|++++|.. .+++..++.++ ++....
T Consensus 228 ~f~ef~~Py~k~i~~~l~~~~~g~~~pvi~f~~-g-~-~~~l~~l~~~g-~d~i~~d~~---~dl~~ak~~~g-~~~~l~ 299 (368)
T 4exq_A 228 AYQRFSLDYIRRVVAQLKREHDGARVPAIAFTK-G-G-GLWLEDLAATG-VDAVGLDWT---VNLGRARERVA-GRVALQ 299 (368)
T ss_dssp HHHHHTHHHHHHHHHTSCCEETTEECCEEEEET-T-C-GGGHHHHHTSS-CSEEECCTT---SCHHHHHHHHT-TSSEEE
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCCCCcEEEEcC-C-c-HHHHHHHHHhC-CCEEeeCCC---CCHHHHHHHhC-CCEEEE
Confidence 54433 334444544332 134554444 3 3 56789999999 999999853 46776666565 456677
Q ss_pred EEeeCCCCCcCCHHHHHHHHHHHhhhcCC-CcEEEeCCCCCc
Q 004263 291 GVVDGRNIWANDLASSLTTLQDLAGTVGK-DKVVVSTSCSLL 331 (765)
Q Consensus 291 GvVdgrn~~~ed~~~~~~~l~~~~~~~~~-~~l~vspsC~L~ 331 (765)
|=+|..- -..+.+++.+.++++++..+. ...++++.||+.
T Consensus 300 Gnldp~~-L~gt~e~I~~~v~~~l~~~g~~~g~I~n~Ghgi~ 340 (368)
T 4exq_A 300 GNLDPTI-LFAPPEAIRAEARAVLDSYGNHPGHVFNLGHGIS 340 (368)
T ss_dssp EEECGGG-GGSCHHHHHHHHHHHHHHHCSCSCEEEEESSCCC
T ss_pred ECCCHHH-hCCCHHHHHHHHHHHHHHhCCCCCEEEeCCCCCC
Confidence 9999864 478999999999999988774 569999999984
No 26
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=97.33 E-value=0.0062 Score=65.86 Aligned_cols=173 Identities=13% Similarity=0.132 Sum_probs=113.5
Q ss_pred CCCceEeehHHHHhhhccC-C----CCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccC-CChHHHHH-
Q 004263 149 METVPVLVGPVSYLLLSKP-A----KGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLD-LDSHKLQA- 221 (765)
Q Consensus 149 ~~~K~vl~GP~T~l~l~~~-~----~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d-~~~~~~~~- 221 (765)
+++-..+-||+|++..... . .-|...-.-.++++.++++..+.++...++|++.|||-++.-..+ ++++..+.
T Consensus 148 ~pligf~g~P~Tla~~l~~~~~~~~~~~~~pe~~~~ll~~i~~~~~~~~~~qi~aGad~i~i~D~~a~~~~lsp~~f~~f 227 (348)
T 4ay7_A 148 VPIVGGMEGPVTVASDLVSVKSFMKWSIKKTDLLEQALDIATEASIIYANAMVEAGADVIAIADPVASPDLMSPDSFRQF 227 (348)
T ss_dssp SCEEEEEECHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECGGGSTTTSCHHHHHHH
T ss_pred eeEEEeccchHHHHHhcccchHHHHHHHHChHhHHHHHHHHHHHHHHHHHHHHhcCCCcceeeccccccccCCHHHHHHH
Confidence 4555667899998742110 0 011100012467888889999999999999999999999855433 56554433
Q ss_pred HHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCC-CCc
Q 004263 222 FSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRN-IWA 300 (765)
Q Consensus 222 ~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn-~~~ 300 (765)
+...++++.+.... ..+++.| |+. ...++.+.+++ +|++++|..- ++++..++.++ ++....|=+|... .-.
T Consensus 228 ~~p~~k~i~~~~~~-~~iih~~-g~~-~~~l~~~~~~g-~d~i~~d~~~--~~~~~~k~~~g-~~~~l~Gnldp~~~l~~ 300 (348)
T 4ay7_A 228 LKSRLQKFASSVNS-VTVLHIC-GNV-NPILSDMADCG-FEGLSVEEKI--GSAKKGKEVIG-TRARLVGNVSSPFTLLP 300 (348)
T ss_dssp HHHHHHHHHHHSSS-EEEEECC-SCC-HHHHHHHHTSC-CSEEECCGGG--CCHHHHHHHHT-TSSEEEEEECCCCCCTT
T ss_pred hhHHHHHHHhhccC-CcEEEec-CCc-HHHHHHHHHhc-cccccccchh--hHHHHHHHHhC-CCEEEEcCCCChHhhcC
Confidence 33444555554433 2345555 677 78899999999 9999988532 24555554454 3555568777543 445
Q ss_pred CCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 004263 301 NDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (765)
Q Consensus 301 ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~ 331 (765)
.+.+++.+.++++.+. ..-++++.||+.
T Consensus 301 g~~e~i~~~v~~~l~~---~g~I~~~Ghgi~ 328 (348)
T 4ay7_A 301 GPVDKIKAEAKEALEG---GIDVLAPGCGIA 328 (348)
T ss_dssp CCHHHHHHHHHHHHHT---TCSEEEESSSCC
T ss_pred CCHHHHHHHHHHHHhC---CCCEEeCCCccC
Confidence 6889999999988873 235789999963
No 27
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=93.03 E-value=1.6 Score=45.83 Aligned_cols=150 Identities=14% Similarity=0.212 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCc
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 665 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~ 665 (765)
...+.++++.+.|+++|-|--.+-+.+. ...+.++.++..+..++.+.+.+ +..|.+.++.. ++++.-++.++
T Consensus 64 ~a~~~a~~~v~~GAdiIDIGgeStrPga--~~v~~~eE~~RvvpvI~~l~~~~--~vpiSIDT~~~---~V~~aAl~aGa 136 (297)
T 1tx2_A 64 AAVRHAKEMRDEGAHIIDIGGESTRPGF--AKVSVEEEIKRVVPMIQAVSKEV--KLPISIDTYKA---EVAKQAIEAGA 136 (297)
T ss_dssp HHHHHHHHHHHTTCSEEEEESCC----C--CCCCHHHHHHHHHHHHHHHHHHS--CSCEEEECSCH---HHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCCCCC--CCCCHHHHHHHHHHHHHHHHhcC--CceEEEeCCCH---HHHHHHHHcCC
Confidence 3344566778899999999865544432 23566777777777776665543 35688998844 46777777799
Q ss_pred cEEEEecCC--CChhhHHHhhhcccCCceeccccccCCCCCCCC----H----HHHHHHHHHHHhh-cCCCcEEEcCCCC
Q 004263 666 DVITIENSR--SDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPS----T----EEIADRINKMLAV-LESNILWVNPDCG 734 (765)
Q Consensus 666 D~isiE~~r--~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~----~----eev~~~i~~a~~~-i~~~~l~vsPdCG 734 (765)
+.| -+.+- .+-+.+....+ + + .++|=.|+.-.|. + +.+.++++.+.+. ++.+++++-|..|
T Consensus 137 ~iI-Ndvsg~~~d~~m~~~aa~-~--g----~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~~GI~~~~IilDPg~G 208 (297)
T 1tx2_A 137 HII-NDIWGAKAEPKIAEVAAH-Y--D----VPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIG 208 (297)
T ss_dssp CEE-EETTTTSSCTHHHHHHHH-H--T----CCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTT
T ss_pred CEE-EECCCCCCCHHHHHHHHH-h--C----CcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHHcCCChhcEEEeCCCC
Confidence 988 33222 13344555554 2 2 2333323222222 3 4445556655532 3345999999999
Q ss_pred CCCCChhhHHHHHHHHH
Q 004263 735 LKTRKYSEVKPALSNMV 751 (765)
Q Consensus 735 L~~~~~~~~~~kL~~mv 751 (765)
| ..+.+.....|+++.
T Consensus 209 f-gk~~~~n~~ll~~l~ 224 (297)
T 1tx2_A 209 F-AKTPEQNLEAMRNLE 224 (297)
T ss_dssp S-SCCHHHHHHHHHTGG
T ss_pred c-CCCHHHHHHHHHHHH
Confidence 9 446655555555543
No 28
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=92.78 E-value=0.47 Score=48.33 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCcEEEecc------cccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHH
Q 004263 587 IKDEVEDLEKAGITVIQIDE------AALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSI 660 (765)
Q Consensus 587 l~~ev~~L~~aG~~~IQiDE------PaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l 660 (765)
+.++++.+.++|++++|+|. |.+..+ + ..+.+++.. +..-+|+.-.+-...++.+
T Consensus 28 l~~~i~~~~~~gad~lhvDvmDG~fvpn~t~G-------~-----~~v~~lr~~-------~~~DvhLMv~~p~~~i~~~ 88 (237)
T 3cu2_A 28 LNEEVTTLLENQINVLHFDIADGQFSSLFTVG-------A-----IGIKYFPTH-------CFKDVHLMVRNQLEVAKAV 88 (237)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBC-------T-----HHHHTSCTT-------SEEEEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEecCccccchhhh-------H-----HHHHHHhhh-------CCCCeEEEEECHHHHHHHH
Confidence 34567788899999999997 433333 1 223333322 2226777534545678899
Q ss_pred HcCCccEEEE--ecCCCChhhHHHhhh
Q 004263 661 MDMDADVITI--ENSRSDEKLLSVFRE 685 (765)
Q Consensus 661 ~~l~~D~isi--E~~r~~~~~L~~~~~ 685 (765)
.++++|.+++ |......+.++.+++
T Consensus 89 ~~aGAd~itvH~ea~~~~~~~i~~i~~ 115 (237)
T 3cu2_A 89 VANGANLVTLQLEQYHDFALTIEWLAK 115 (237)
T ss_dssp HHTTCSEEEEETTCTTSHHHHHHHHTT
T ss_pred HHcCCCEEEEecCCcccHHHHHHHHHh
Confidence 9999999555 443221245555654
No 29
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=92.64 E-value=3.3 Score=43.11 Aligned_cols=154 Identities=14% Similarity=0.164 Sum_probs=88.5
Q ss_pred HHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCcc
Q 004263 587 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD 666 (765)
Q Consensus 587 l~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D 666 (765)
..+.+.++.+.|+++|=|--.+.+.+ ....+.++.++..+...+.+.+.. +..|.++++.. ++++.-++.+++
T Consensus 40 a~~~a~~~v~~GAdiIDIGgestrPg--a~~v~~~eE~~rv~pvi~~l~~~~--~~piSIDT~~~---~va~aAl~aGa~ 112 (282)
T 1aj0_A 40 AVKHANLMINAGATIIDVGGESTRPG--AAEVSVEEELQRVIPVVEAIAQRF--EVWISVDTSKP---EVIRESAKVGAH 112 (282)
T ss_dssp HHHHHHHHHHHTCSEEEEESSCCSTT--CCCCCHHHHHHHHHHHHHHHHHHC--CCEEEEECCCH---HHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCEEEECCCcCCCC--CCcCCHHHHHHHHHHHHHHHHhhc--CCeEEEeCCCH---HHHHHHHHcCCC
Confidence 34456678889999998886554433 123456677777777777765544 46789998744 467777788999
Q ss_pred EEEEecCCCChhhHHHhhhcccCCceeccccccCC--C----CCCCC-----HHHHHHHHHHHHhh-cCCCcEEEcCCCC
Q 004263 667 VITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIH--S----PRIPS-----TEEIADRINKMLAV-LESNILWVNPDCG 734 (765)
Q Consensus 667 ~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~--s----~~ve~-----~eev~~~i~~a~~~-i~~~~l~vsPdCG 734 (765)
.|.==+.-.+.+.+....+ + +-.+++=-..+. + +.-.+ .+.+.++++.+.+. ++.+++++-|..|
T Consensus 113 iINdvsg~~d~~~~~~~a~-~--~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg~g 189 (282)
T 1aj0_A 113 IINDIRSLSEPGALEAAAE-T--GLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFG 189 (282)
T ss_dssp EEEETTTTCSTTHHHHHHH-H--TCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTT
T ss_pred EEEECCCCCCHHHHHHHHH-h--CCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCC
Confidence 7732121123344554454 2 221111111110 0 11111 45566677766643 3456999999999
Q ss_pred CCCCChhhHHHHHHHHH
Q 004263 735 LKTRKYSEVKPALSNMV 751 (765)
Q Consensus 735 L~~~~~~~~~~kL~~mv 751 (765)
|+. +.+....-|+++.
T Consensus 190 f~k-~~~~n~~ll~~l~ 205 (282)
T 1aj0_A 190 FGK-NLSHNYSLLARLA 205 (282)
T ss_dssp SSC-CHHHHHHHHHTGG
T ss_pred ccc-CHHHHHHHHHHHH
Confidence 954 6655555555543
No 30
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=89.89 E-value=1.7 Score=44.48 Aligned_cols=97 Identities=15% Similarity=0.232 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCc
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 665 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~ 665 (765)
-+.++++.+.++|++++++|--.-.. .|--...+ ..+++++..+-. ..+.+|+-..+-...++.+.++++
T Consensus 41 ~L~~~i~~l~~~G~d~lHvDVmDg~F-Vpnit~G~-----~~v~~lr~~~p~----~~ldvHLmv~~p~~~i~~~~~aGA 110 (246)
T 3inp_A 41 RLGDDVKAVLAAGADNIHFDVMDNHY-VPNLTFGP-----MVLKALRDYGIT----AGMDVHLMVKPVDALIESFAKAGA 110 (246)
T ss_dssp GHHHHHHHHHHTTCCCEEEEEEBSSS-SSCBCCCH-----HHHHHHHHHTCC----SCEEEEEECSSCHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHcCCCEEEEEecCCCc-CcchhcCH-----HHHHHHHHhCCC----CeEEEEEeeCCHHHHHHHHHHcCC
Confidence 35678888999999999998533111 12112233 357777776522 335555555566678899999999
Q ss_pred cEEEEecCC-CC-hhhHHHhhhcccCCceecc
Q 004263 666 DVITIENSR-SD-EKLLSVFREGVKYRAGIGP 695 (765)
Q Consensus 666 D~isiE~~r-~~-~~~L~~~~~~~~~~~~l~~ 695 (765)
|.+++=... .+ .+.++.+++ ++..+|+
T Consensus 111 d~itvH~Ea~~~~~~~i~~ir~---~G~k~Gv 139 (246)
T 3inp_A 111 TSIVFHPEASEHIDRSLQLIKS---FGIQAGL 139 (246)
T ss_dssp SEEEECGGGCSCHHHHHHHHHT---TTSEEEE
T ss_pred CEEEEccccchhHHHHHHHHHH---cCCeEEE
Confidence 999986221 23 346666765 3555555
No 31
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=89.69 E-value=8 Score=40.16 Aligned_cols=152 Identities=11% Similarity=0.160 Sum_probs=82.0
Q ss_pred HHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccE
Q 004263 588 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 667 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~ 667 (765)
.+.+..+.+.|+++|=|---+-+.+. ...+.++.++..+..++.+.+. +..|.++++.. ++++.-++.+++.
T Consensus 32 ~~~a~~~v~~GAdiIDIGgestrpga--~~v~~~eE~~Rv~pvi~~l~~~---~~piSIDT~~~---~va~aAl~aGa~i 103 (280)
T 1eye_A 32 VKHGLAMAAAGAGIVDVGGESSRPGA--TRVDPAVETSRVIPVVKELAAQ---GITVSIDTMRA---DVARAALQNGAQM 103 (280)
T ss_dssp HHHHHHHHHTTCSEEEEECC----------------HHHHHHHHHHHHHT---TCCEEEECSCH---HHHHHHHHTTCCE
T ss_pred HHHHHHHHHCCCCEEEECCccCCCCC--CCCCHHHHHHHHHHHHHHhhcC---CCEEEEeCCCH---HHHHHHHHcCCCE
Confidence 34566788899999888753333221 1244566777788888777653 46688998744 4677778889987
Q ss_pred EE-EecCCCChhhHHHhhhcccCCceeccccccCC--C-----CCCCC-----HHHHHHHHHHHHhh-cCCCcEEEcCCC
Q 004263 668 IT-IENSRSDEKLLSVFREGVKYRAGIGPGVYDIH--S-----PRIPS-----TEEIADRINKMLAV-LESNILWVNPDC 733 (765)
Q Consensus 668 is-iE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~--s-----~~ve~-----~eev~~~i~~a~~~-i~~~~l~vsPdC 733 (765)
|. +-....+-+.+....+ + +-.+++--..+. + +.-.+ .+.+.++++.+.+. ++.+++++-|..
T Consensus 104 INdvsg~~~d~~m~~~~a~-~--~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~Gi~~~~IilDPg~ 180 (280)
T 1eye_A 104 VNDVSGGRADPAMGPLLAE-A--DVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGL 180 (280)
T ss_dssp EEETTTTSSCTTHHHHHHH-H--TCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCT
T ss_pred EEECCCCCCCHHHHHHHHH-h--CCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHcCCChhhEEEECCC
Confidence 73 2111113344555554 2 222222111111 1 11122 45556667766653 344699999999
Q ss_pred CCCCCChhhHHHHHHHHH
Q 004263 734 GLKTRKYSEVKPALSNMV 751 (765)
Q Consensus 734 GL~~~~~~~~~~kL~~mv 751 (765)
||.- +.+....-|+++.
T Consensus 181 Gf~k-~~~~n~~ll~~l~ 197 (280)
T 1eye_A 181 GFAK-TAQHNWAILHALP 197 (280)
T ss_dssp TSSC-CHHHHHHHHHTHH
T ss_pred Cccc-CHHHHHHHHHHHH
Confidence 9875 5555555555554
No 32
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=88.73 E-value=1.2 Score=45.05 Aligned_cols=141 Identities=16% Similarity=0.215 Sum_probs=75.7
Q ss_pred HHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCcc
Q 004263 587 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD 666 (765)
Q Consensus 587 l~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D 666 (765)
+.++++.+ ++|++++++|--.-.. .|--...+ ..+++++..+ +..+.+|+--.|-...++.+.++++|
T Consensus 15 l~~~i~~~-~~gad~lHvDvmDG~f-vpn~t~G~-----~~v~~lr~~~-----~~~~dvhLmv~dp~~~i~~~~~aGAd 82 (231)
T 3ctl_A 15 FKEQIEFI-DSHADYFHIDIMDGHF-VPNLTLSP-----FFVSQVKKLA-----TKPLDCHLMVTRPQDYIAQLARAGAD 82 (231)
T ss_dssp HHHHHHHH-HTTCSCEEEEEECSSS-SSCCCBCH-----HHHHHHHTTC-----CSCEEEEEESSCGGGTHHHHHHHTCS
T ss_pred HHHHHHHH-HcCCCEEEEEEEeCcc-CccchhcH-----HHHHHHHhcc-----CCcEEEEEEecCHHHHHHHHHHcCCC
Confidence 55677888 8999999999421110 12111222 3566666543 13355555434555668899999999
Q ss_pred EEEEe--c-CCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEE---EcCCCCCCCCCh
Q 004263 667 VITIE--N-SRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILW---VNPDCGLKTRKY 740 (765)
Q Consensus 667 ~isiE--~-~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~---vsPdCGL~~~~~ 740 (765)
.+++= + ...-.+.++.+++ ++..+|+-+ +..+| ++ .++..+.. .+.+. |+|+.|=... .
T Consensus 83 ~itvh~Ea~~~~~~~~i~~i~~---~G~k~gv~l-np~tp-~~-------~~~~~l~~--~D~VlvmsV~pGfggQ~f-~ 147 (231)
T 3ctl_A 83 FITLHPETINGQAFRLIDEIRR---HDMKVGLIL-NPETP-VE-------AMKYYIHK--ADKITVMTVDPGFAGQPF-I 147 (231)
T ss_dssp EEEECGGGCTTTHHHHHHHHHH---TTCEEEEEE-CTTCC-GG-------GGTTTGGG--CSEEEEESSCTTCSSCCC-C
T ss_pred EEEECcccCCccHHHHHHHHHH---cCCeEEEEE-ECCCc-HH-------HHHHHHhc--CCEEEEeeeccCcCCccc-c
Confidence 99765 4 3311245666665 355666644 33332 11 22222232 35554 5565552222 3
Q ss_pred hhHHHHHHHHHHHH
Q 004263 741 SEVKPALSNMVAAA 754 (765)
Q Consensus 741 ~~~~~kL~~mv~aa 754 (765)
+....|++.+.+..
T Consensus 148 ~~~l~kI~~lr~~~ 161 (231)
T 3ctl_A 148 PEMLDKLAELKAWR 161 (231)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45667776665544
No 33
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=84.24 E-value=6.6 Score=39.45 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHH-ccCCCCceEEEEeccCChhHHHHHHHcCC
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN-CGVQDTTQVHTHMCYSNFNDIIHSIMDMD 664 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~-~~v~~~~~I~~H~C~g~~~~i~~~l~~l~ 664 (765)
-+.++++.+.++|++++++|=-.-.. .|--...+ ..+++++..+ ..++ ..+|+++ .+-...++.+.+++
T Consensus 18 ~l~~~i~~l~~~g~d~~h~DVmDg~F-vpn~~~G~-----~~v~~ir~~~~~~~~--~dvhLmv--~~p~~~i~~~~~aG 87 (228)
T 3ovp_A 18 NLGAECLRMLDSGADYLHLDVMDGHF-VPNITFGH-----PVVESLRKQLGQDPF--FDMHMMV--SKPEQWVKPMAVAG 87 (228)
T ss_dssp GHHHHHHHHHHTTCSCEEEEEEBSSS-SSCBCBCH-----HHHHHHHHHHCSSSC--EEEEEEC--SCGGGGHHHHHHHT
T ss_pred hHHHHHHHHHHcCCCEEEEEecCCCc-CcccccCH-----HHHHHHHHhhCCCCc--EEEEEEe--CCHHHHHHHHHHcC
Confidence 35678888999999999998532111 12112233 3566777765 3332 3345554 55556788999999
Q ss_pred ccEEEEecCC-CC-hhhHHHhhhcccCCceecc
Q 004263 665 ADVITIENSR-SD-EKLLSVFREGVKYRAGIGP 695 (765)
Q Consensus 665 ~D~isiE~~r-~~-~~~L~~~~~~~~~~~~l~~ 695 (765)
+|.+++=... .+ .+.++.+++ ++..+|+
T Consensus 88 ad~itvH~Ea~~~~~~~i~~i~~---~G~k~gv 117 (228)
T 3ovp_A 88 ANQYTFHLEATENPGALIKDIRE---NGMKVGL 117 (228)
T ss_dssp CSEEEEEGGGCSCHHHHHHHHHH---TTCEEEE
T ss_pred CCEEEEccCCchhHHHHHHHHHH---cCCCEEE
Confidence 9999886321 13 245666665 3445544
No 34
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=83.66 E-value=29 Score=35.65 Aligned_cols=145 Identities=14% Similarity=0.299 Sum_probs=88.5
Q ss_pred HHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEE
Q 004263 589 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 668 (765)
Q Consensus 589 ~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~i 668 (765)
+.+..+.+.|+++|=|=--+-+-+ ....+.++.++..+..++.+.+ .+..|.+-++.. .+...-.+.+++.|
T Consensus 34 ~~a~~m~~~GAdiIDIGgeSTRPg--a~~vs~eeE~~Rv~pvi~~l~~---~~v~iSIDT~~~---~Va~~al~aGa~iI 105 (270)
T 4hb7_A 34 NRVKAMIDEGADIIDVGGVSTRPG--HEMVTLEEELNRVLPVVEAIVG---FDVKISVDTFRS---EVAEACLKLGVDMI 105 (270)
T ss_dssp HHHHHHHHTTCSEEEEESCCCSTT--CCCCCHHHHHHHHHHHHHHHTT---SSSEEEEECSCH---HHHHHHHHHTCCEE
T ss_pred HHHHHHHHCCCCEEEECCccCCCC--CCCCchHHHHHHHHHHHHHhhc---CCCeEEEECCCH---HHHHHHHHhcccee
Confidence 345678889999988864444433 2236678888888888887743 357899999866 46777788999977
Q ss_pred EEecC--CCChhhHHHhhhcccCCceeccccccCCC---CCCCC-HHHH----HHHHHHHHhh-cCCCcEEEcCCCCCCC
Q 004263 669 TIENS--RSDEKLLSVFREGVKYRAGIGPGVYDIHS---PRIPS-TEEI----ADRINKMLAV-LESNILWVNPDCGLKT 737 (765)
Q Consensus 669 siE~~--r~~~~~L~~~~~~~~~~~~l~~GVvd~~s---~~ve~-~eev----~~~i~~a~~~-i~~~~l~vsPdCGL~~ 737 (765)
. |.+ ..+-+.++...+ ++ .++|=-|+ |.-++ ++++ .++++.+.+. ++.+++++-|+-||+-
T Consensus 106 N-DVs~g~~d~~m~~~va~---~~----~~~vlMH~~~~p~~~~vv~ev~~~l~~~i~~a~~aGI~~~~IilDPGiGFgK 177 (270)
T 4hb7_A 106 N-DQWAGLYDHRMFQIVAK---YD----AEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAK 177 (270)
T ss_dssp E-ETTTTSSCTHHHHHHHH---TT----CEEEEECCCSSCCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSC
T ss_pred c-cccccccchhHHHHHHH---cC----CCeEEeccccCCccccchhHHHHHHHHHHHHHHHcCCCCceEEEeCCCCccc
Confidence 5 321 224455555554 22 22332222 33333 3344 4455555442 3457999999999974
Q ss_pred CChhhHHHHHHHH
Q 004263 738 RKYSEVKPALSNM 750 (765)
Q Consensus 738 ~~~~~~~~kL~~m 750 (765)
+.++-++-|+++
T Consensus 178 -t~~~N~~ll~~l 189 (270)
T 4hb7_A 178 -TRNEEAEVMARL 189 (270)
T ss_dssp -CHHHHHHHHTCH
T ss_pred -ccccHHHHHhhH
Confidence 454444444444
No 35
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=83.45 E-value=4.4 Score=40.76 Aligned_cols=139 Identities=12% Similarity=0.200 Sum_probs=71.9
Q ss_pred HHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCcc
Q 004263 587 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD 666 (765)
Q Consensus 587 l~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D 666 (765)
+.++++.+.++|++++|+|--.-.. .|.....+ ..+++++..+ ++..+.+|+--.+-...++.+.+ +|
T Consensus 20 l~~~i~~~~~~g~d~iHvDvmDg~f-vpn~t~G~-----~~v~~lr~~~----p~~~~dvhLmv~dp~~~i~~~~~--Ad 87 (227)
T 1tqx_A 20 LAEETQRMESLGAEWIHLDVMDMHF-VPNLSFGP-----PVINNLKKYT----KSIFFDVHLMVEYPEKYVPLLKT--SN 87 (227)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEBSSS-SSCBCCCH-----HHHHHHGGGC----SSCEEEEEEESSCGGGGGGGCTT--SS
T ss_pred HHHHHHHHHHcCCCEEEEEEEeCCc-CcchhcCH-----HHHHHHHHhC----CCCcEEEEEEEcCHHHHHHHHHh--CC
Confidence 4567778889999999999632110 11111122 2455555432 13457777765554445566666 55
Q ss_pred EE--EEecCCCC-hhhHH---HhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcC-CCcE---EEcCCCCCC
Q 004263 667 VI--TIENSRSD-EKLLS---VFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE-SNIL---WVNPDCGLK 736 (765)
Q Consensus 667 ~i--siE~~r~~-~~~L~---~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~-~~~l---~vsPdCGL~ 736 (765)
.+ +.|+...+ .+.++ .+++ .+..+|+-+ +.++| .+.++..+. ++ .+.+ -|+|+ |.
T Consensus 88 ~itvH~ea~~~~~~~~i~~~~~i~~---~G~k~gval-np~tp--------~~~~~~~l~-~g~~D~VlvmsV~pG--f~ 152 (227)
T 1tqx_A 88 QLTFHFEALNEDTERCIQLAKEIRD---NNLWCGISI-KPKTD--------VQKLVPILD-TNLINTVLVMTVEPG--FG 152 (227)
T ss_dssp EEEEEGGGGTTCHHHHHHHHHHHHT---TTCEEEEEE-CTTSC--------GGGGHHHHT-TTCCSEEEEESSCTT--CS
T ss_pred EEEEeecCCccCHHHHHHHHHHHHH---cCCeEEEEe-CCCCc--------HHHHHHHhh-cCCcCEEEEeeeccC--CC
Confidence 55 66654423 34566 6665 366666644 33333 222333333 11 3444 35554 44
Q ss_pred CCC-hhhHHHHHHHHHH
Q 004263 737 TRK-YSEVKPALSNMVA 752 (765)
Q Consensus 737 ~~~-~~~~~~kL~~mv~ 752 (765)
... .+....|++.+.+
T Consensus 153 gq~f~~~~l~ki~~lr~ 169 (227)
T 1tqx_A 153 GQSFMHDMMGKVSFLRK 169 (227)
T ss_dssp SCCCCGGGHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHH
Confidence 432 3355666665544
No 36
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=82.57 E-value=3.4 Score=47.06 Aligned_cols=108 Identities=15% Similarity=0.087 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
+.++++.+.|+++||+.|+-+. ..+...+.+....+.... ...++|.. .+ +....++ .||+||.-.
T Consensus 29 ~~ve~al~~Gv~~vQlR~K~~~----~~~~~~~a~~l~~l~~~~-~v~liIND---~~-----dlA~~~g-AdGVHLgq~ 94 (540)
T 3nl6_A 29 GQVEAGLQNGVTLVQIREKDAD----TKFFIEEALQIKELCHAH-NVPLIIND---RI-----DVAMAIG-ADGIHVGQD 94 (540)
T ss_dssp HHHHHHHHTTCSEEEECCSSSC----TTHHHHHHHHHHHHHHHT-TCCEEECS---CS-----HHHHHTT-CSEEEECTT
T ss_pred HHHHHHHHCCCCEEEEecCCCC----HHHHHHHHHHHHHHHHhc-CCEEEEeC---cH-----HHHHHcC-CCEEEEChh
Confidence 3444556889999999999543 333333333333443322 35677763 23 4556788 999999744
Q ss_pred cCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcC---CCcEEEeC
Q 004263 270 RGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVG---KDKVVVST 326 (765)
Q Consensus 270 ~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~---~~~l~vsp 326 (765)
+- ....+++.+++++.+++.+ .+++++.+ +.+ .| .|-|.++|
T Consensus 95 dl--~~~~ar~~lg~~~iiG~S~--------ht~eea~~----A~~-~G~~~aDYv~~Gp 139 (540)
T 3nl6_A 95 DM--PIPMIRKLVGPDMVIGWSV--------GFPEEVDE----LSK-MGPDMVDYIGVGT 139 (540)
T ss_dssp SS--CHHHHHHHHCTTSEEEEEE--------CSHHHHHH----HHH-TCC--CCEEEESC
T ss_pred hc--CHHHHHHHhCCCCEEEEEC--------CCHHHHHH----HHH-cCCCCCCEEEEcC
Confidence 32 2344444456677777766 25666533 222 35 56777765
No 37
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=80.73 E-value=8.9 Score=38.42 Aligned_cols=97 Identities=19% Similarity=0.277 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCcc
Q 004263 587 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD 666 (765)
Q Consensus 587 l~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D 666 (765)
+.++++.+.++|+++||+|...-. ..|.-.... ..+..++..+ +..+.+|+---|-...++...++++|
T Consensus 19 l~~~i~~~~~~Gad~ihldi~DG~-fvp~~~~g~-----~~v~~lr~~~-----~~~~~vhlmv~dp~~~i~~~~~aGad 87 (230)
T 1tqj_A 19 LGEEIKAVDEAGADWIHVDVMDGR-FVPNITIGP-----LIVDAIRPLT-----KKTLDVHLMIVEPEKYVEDFAKAGAD 87 (230)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEBSS-SSSCBCBCH-----HHHHHHGGGC-----CSEEEEEEESSSGGGTHHHHHHHTCS
T ss_pred HHHHHHHHHHcCCCEEEEEEEecC-CCcchhhhH-----HHHHHHHhhc-----CCcEEEEEEccCHHHHHHHHHHcCCC
Confidence 345677788999999999983211 111111111 2344444332 23566666544433467888999999
Q ss_pred EEEEecC--CCC--hhhHHHhhhcccCCceecccc
Q 004263 667 VITIENS--RSD--EKLLSVFREGVKYRAGIGPGV 697 (765)
Q Consensus 667 ~isiE~~--r~~--~~~L~~~~~~~~~~~~l~~GV 697 (765)
++++=.. ..+ .+.++.+.+ .+..+|+-+
T Consensus 88 gv~vh~e~~~~~~~~~~~~~i~~---~g~~~gv~~ 119 (230)
T 1tqj_A 88 IISVHVEHNASPHLHRTLCQIRE---LGKKAGAVL 119 (230)
T ss_dssp EEEEECSTTTCTTHHHHHHHHHH---TTCEEEEEE
T ss_pred EEEECcccccchhHHHHHHHHHH---cCCcEEEEE
Confidence 9966533 222 244555554 355565544
No 38
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=80.69 E-value=28 Score=36.65 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=79.4
Q ss_pred HHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccE
Q 004263 588 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 667 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~ 667 (765)
.+...++.+.|+++|=|---+-+-+ + ..+.++.++..+..++.+.+..+ +..|.+-++.. ++++.-++.++|.
T Consensus 68 ~~~A~~~v~~GAdIIDIGgeSTrPG-~--~v~~~eEl~Rv~pvI~~l~~~~~-~vpISIDT~~~---~VaeaAl~aGa~i 140 (318)
T 2vp8_A 68 RDAVHRAVADGADVIDVGGVKAGPG-E--RVDVDTEITRLVPFIEWLRGAYP-DQLISVDTWRA---QVAKAACAAGADL 140 (318)
T ss_dssp HHHHHHHHHTTCSEEEEC-------------CHHHHHHHHHHHHHHHHHHST-TCEEEEECSCH---HHHHHHHHHTCCE
T ss_pred HHHHHHHHHCCCCEEEECCCcCCCC-C--CCCHHHHHHHHHHHHHHHHhhCC-CCeEEEeCCCH---HHHHHHHHhCCCE
Confidence 3455678899999998885444433 1 24567778888777777665442 45677777643 4677777779986
Q ss_pred EEEecCC-CChhhHHHhhhcccCCceeccccccCCCCC----CCC------------HHHHHHHHHHHHhh-cCCCcEEE
Q 004263 668 ITIENSR-SDEKLLSVFREGVKYRAGIGPGVYDIHSPR----IPS------------TEEIADRINKMLAV-LESNILWV 729 (765)
Q Consensus 668 isiE~~r-~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~----ve~------------~eev~~~i~~a~~~-i~~~~l~v 729 (765)
|. |.+- .+-+.+....+ + +-.+++--..+..|. .++ .+.+.++++.+.+. ++.+++++
T Consensus 141 IN-DVsg~~d~~m~~vaa~-~--g~~vVlmh~~G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~aGI~~~~Iil 216 (318)
T 2vp8_A 141 IN-DTWGGVDPAMPEVAAE-F--GAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLI 216 (318)
T ss_dssp EE-ETTSSSSTTHHHHHHH-H--TCEEEEECC-------------CCSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred EE-ECCCCCchHHHHHHHH-h--CCCEEEECCCCCCccccccccccccccccHHHHHHHHHHHHHHHHHHcCCChhhEEE
Confidence 63 3211 13344554444 2 222222111111011 011 13444555665542 34469999
Q ss_pred cCCCCCCCCChhhHHHHHHHHH
Q 004263 730 NPDCGLKTRKYSEVKPALSNMV 751 (765)
Q Consensus 730 sPdCGL~~~~~~~~~~kL~~mv 751 (765)
-|..||.- +.+....-|+++.
T Consensus 217 DPG~GF~K-t~~~nl~ll~~l~ 237 (318)
T 2vp8_A 217 DPAHDFGK-NTFHGLLLLRHVA 237 (318)
T ss_dssp ETTTTCCT-TSHHHHHHHHTHH
T ss_pred cCCCCccc-CHHHHHHHHHHHH
Confidence 99999965 4444445554444
No 39
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=79.70 E-value=52 Score=34.23 Aligned_cols=150 Identities=14% Similarity=0.175 Sum_probs=86.5
Q ss_pred HHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEE
Q 004263 589 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 668 (765)
Q Consensus 589 ~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~i 668 (765)
+...++.+.|+++|=|---+-+.+. ...+.++.++..+..++.+.+. +..|.+-++.. ++++.-++.+++.|
T Consensus 50 ~~a~~~v~~GAdiIDIGgeSTrPga--~~v~~~eE~~Rv~pvi~~l~~~---~vpiSIDT~~~---~Va~aAl~aGa~iI 121 (294)
T 2y5s_A 50 RRAERMIAEGADLLDIGGESTRPGA--PPVPLDEELARVIPLVEALRPL---NVPLSIDTYKP---AVMRAALAAGADLI 121 (294)
T ss_dssp HHHHHHHHTTCSEEEEESSCCSTTC--CCCCHHHHHHHHHHHHHHHGGG---CSCEEEECCCH---HHHHHHHHHTCSEE
T ss_pred HHHHHHHHCCCCEEEECCCcCCCCC--CCCCHHHHHHHHHHHHHHHhhC---CCeEEEECCCH---HHHHHHHHcCCCEE
Confidence 4556788999999988865544442 2356788888888888887653 45677777644 46777777788877
Q ss_pred E-EecCCCChhhHHHhhhcccCCceecccccc----C---CCCCCCC-----HHHHHHHHHHHHhh-cCCCcEEEcCCCC
Q 004263 669 T-IENSRSDEKLLSVFREGVKYRAGIGPGVYD----I---HSPRIPS-----TEEIADRINKMLAV-LESNILWVNPDCG 734 (765)
Q Consensus 669 s-iE~~r~~~~~L~~~~~~~~~~~~l~~GVvd----~---~s~~ve~-----~eev~~~i~~a~~~-i~~~~l~vsPdCG 734 (765)
. +-... +-+.+....+ ++-.+++--.. + ..+.-++ .+.+.++++.+.+. ++.+++++-|..|
T Consensus 122 NdVsg~~-d~~m~~~~a~---~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~~~IilDPG~G 197 (294)
T 2y5s_A 122 NDIWGFR-QPGAIDAVRD---GNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRDAGVAAERICVDPGFG 197 (294)
T ss_dssp EETTTTC-STTHHHHHSS---SSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTT
T ss_pred EECCCCC-chHHHHHHHH---hCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCc
Confidence 3 21111 3234444444 23222221111 1 1122223 34455566666542 3446999999999
Q ss_pred CCCCChhhHHHHHHHH
Q 004263 735 LKTRKYSEVKPALSNM 750 (765)
Q Consensus 735 L~~~~~~~~~~kL~~m 750 (765)
|.-...+....-|+++
T Consensus 198 f~kt~~~~n~~ll~~l 213 (294)
T 2y5s_A 198 FGKAVVDDNYALLAAL 213 (294)
T ss_dssp SSSCTTHHHHHHHHTG
T ss_pred ccccchHHHHHHHHHH
Confidence 9654424444444444
No 40
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=78.69 E-value=37 Score=35.68 Aligned_cols=151 Identities=12% Similarity=0.220 Sum_probs=81.0
Q ss_pred HHHHHHHHHcCCcEEEecccccccCCCCC--CCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCc
Q 004263 588 KDEVEDLEKAGITVIQIDEAALREGLPLR--KSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 665 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDEPaL~~~l~l~--~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~ 665 (765)
.+.+.++.+.|+++|=|--.+-+.+-..+ ..+.++.++..+..++.+.+.. +..|.+-++.. ++++.-++.++
T Consensus 52 l~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~--~vpISIDT~~~---~Va~aAl~aGa 126 (314)
T 3tr9_A 52 LRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRF--PQLISVDTSRP---RVMREAVNTGA 126 (314)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHC--CSEEEEECSCH---HHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhC--CCeEEEeCCCH---HHHHHHHHcCC
Confidence 34456788899999888754433321100 1344666666777766655443 36788887744 46677777788
Q ss_pred cEEEEecCC-CChhhHHHhhhcccCCceeccccccCC-CCCCC-----------CHHHHHHHHHHHHhh-cCCCcEEEcC
Q 004263 666 DVITIENSR-SDEKLLSVFREGVKYRAGIGPGVYDIH-SPRIP-----------STEEIADRINKMLAV-LESNILWVNP 731 (765)
Q Consensus 666 D~isiE~~r-~~~~~L~~~~~~~~~~~~l~~GVvd~~-s~~ve-----------~~eev~~~i~~a~~~-i~~~~l~vsP 731 (765)
+.|. |.+- .+-+.+....+ + +-.+++ ...+ .|.-. -.+.+.++++.+.+. ++.+++++-|
T Consensus 127 ~iIN-DVsg~~~~~m~~v~a~-~--g~~vVl--Mh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~GI~~~~IilDP 200 (314)
T 3tr9_A 127 DMIN-DQRALQLDDALTTVSA-L--KTPVCL--MHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKKAGISEDRIIIDP 200 (314)
T ss_dssp CEEE-ETTTTCSTTHHHHHHH-H--TCCEEE--ECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEC
T ss_pred CEEE-ECCCCCchHHHHHHHH-h--CCeEEE--ECCCCCCcccccccccchHHHHHHHHHHHHHHHHHcCCCHhHEEEeC
Confidence 8663 3211 12234444444 2 222221 1111 12111 134445556665543 3446999999
Q ss_pred CCC---CCCCChhhHHHHHHHH
Q 004263 732 DCG---LKTRKYSEVKPALSNM 750 (765)
Q Consensus 732 dCG---L~~~~~~~~~~kL~~m 750 (765)
..| |+- +.+.....|+++
T Consensus 201 G~G~~~F~K-t~~~n~~lL~~l 221 (314)
T 3tr9_A 201 GFGQGNYGK-NVSENFYLLNKL 221 (314)
T ss_dssp CCCSGGGCC-CHHHHHHHHHTT
T ss_pred CCCchhhcC-CHHHHHHHHHHH
Confidence 988 764 454445555554
No 41
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=78.21 E-value=27 Score=35.26 Aligned_cols=110 Identities=11% Similarity=0.049 Sum_probs=62.8
Q ss_pred HHHHHHcCCCeEEeeccccc-----cCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEE
Q 004263 192 VAELKAAGATWIQFDEPTLV-----LDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF 266 (765)
Q Consensus 192 l~~L~~~G~~~VQiDEP~L~-----~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~l 266 (765)
++++.+.|+++||+=|+-.. ..++..+...+.+....+.... ...++|. ++ ++....+. .||+||
T Consensus 49 ~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~-~~~liIn---d~-----~~lA~~~g-AdGVHL 118 (243)
T 3o63_A 49 AEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRY-GALFAVN---DR-----ADIARAAG-ADVLHL 118 (243)
T ss_dssp HHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHT-TCEEEEE---SC-----HHHHHHHT-CSEEEE
T ss_pred HHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhh-CCEEEEe---CH-----HHHHHHhC-CCEEEe
Confidence 34455789999999998521 1133444433334444444432 2567776 22 23455678 999999
Q ss_pred EeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 004263 267 DLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 267 D~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vsp 326 (765)
.-..- ....+++.++.++.+++.+ .+++++. ++.+ .|.+=|.++|
T Consensus 119 g~~dl--~~~~~r~~~~~~~~iG~S~--------ht~~Ea~----~A~~-~GaDyI~vgp 163 (243)
T 3o63_A 119 GQRDL--PVNVARQILAPDTLIGRST--------HDPDQVA----AAAA-GDADYFCVGP 163 (243)
T ss_dssp CTTSS--CHHHHHHHSCTTCEEEEEE--------CSHHHHH----HHHH-SSCSEEEECC
T ss_pred cCCcC--CHHHHHHhhCCCCEEEEeC--------CCHHHHH----HHhh-CCCCEEEEcC
Confidence 75332 2333444456677777654 5566643 3322 4667788876
No 42
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=76.28 E-value=38 Score=33.50 Aligned_cols=97 Identities=16% Similarity=0.238 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCcc
Q 004263 587 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD 666 (765)
Q Consensus 587 l~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D 666 (765)
+.+.++.+.++|+++||+|.-.... .|.....+ ..+..++..+ +..+.+|+---|-.+.++.+.++++|
T Consensus 21 l~~~i~~~~~~Gad~i~l~i~Dg~f-v~~~~~~~-----~~~~~lr~~~-----~~~~~v~lmv~d~~~~i~~~~~agad 89 (228)
T 1h1y_A 21 LAAEADRMVRLGADWLHMDIMDGHF-VPNLTIGA-----PVIQSLRKHT-----KAYLDCHLMVTNPSDYVEPLAKAGAS 89 (228)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEBSSS-SSCBCBCH-----HHHHHHHTTC-----CSEEEEEEESSCGGGGHHHHHHHTCS
T ss_pred HHHHHHHHHHcCCCEEEEEEecCCc-CcchhhCH-----HHHHHHHhhc-----CCcEEEEEEecCHHHHHHHHHHcCCC
Confidence 3456677788999999999632111 11111122 2233343322 23456666533433458888889999
Q ss_pred EE--EEecCCCC-hhhHHHhhhcccCCceecccc
Q 004263 667 VI--TIENSRSD-EKLLSVFREGVKYRAGIGPGV 697 (765)
Q Consensus 667 ~i--siE~~r~~-~~~L~~~~~~~~~~~~l~~GV 697 (765)
++ +.|..... .+.++.+.+ .+..+++-+
T Consensus 90 ~v~vH~~~~~~~~~~~~~~i~~---~g~~igv~~ 120 (228)
T 1h1y_A 90 GFTFHIEVSRDNWQELIQSIKA---KGMRPGVSL 120 (228)
T ss_dssp EEEEEGGGCTTTHHHHHHHHHH---TTCEEEEEE
T ss_pred EEEECCCCcccHHHHHHHHHHH---cCCCEEEEE
Confidence 99 44443333 344566654 245555433
No 43
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=72.89 E-value=35 Score=35.10 Aligned_cols=146 Identities=10% Similarity=0.124 Sum_probs=76.0
Q ss_pred HHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcC--Ccc
Q 004263 589 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDM--DAD 666 (765)
Q Consensus 589 ~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l--~~D 666 (765)
+..+.+.+.|+++|-|---+- ..+-.+-+.+++++++.. . +..|.+-++.. ++++.-++. +++
T Consensus 38 ~~a~~~v~~GAdiIDIg~~s~-------~~eE~~rv~~vi~~l~~~---~--~~pisIDT~~~---~v~~aal~a~~Ga~ 102 (271)
T 2yci_X 38 EWARRQAEKGAHYLDVNTGPT-------ADDPVRVMEWLVKTIQEV---V--DLPCCLDSTNP---DAIEAGLKVHRGHA 102 (271)
T ss_dssp HHHHHHHHTTCSEEEEECCSC-------SSCHHHHHHHHHHHHHHH---C--CCCEEEECSCH---HHHHHHHHHCCSCC
T ss_pred HHHHHHHHCCCCEEEEcCCcC-------chhHHHHHHHHHHHHHHh---C--CCeEEEeCCCH---HHHHHHHHhCCCCC
Confidence 344567789999988874331 111223344555555443 2 35688887743 466666666 888
Q ss_pred EEE-EecCCCC-hhhHHHhhhcccCCceeccccccCCCCCCCCHHHH----HHHHHHHHhh-cCCCcEEEcCCCCCCCCC
Q 004263 667 VIT-IENSRSD-EKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEI----ADRINKMLAV-LESNILWVNPDCGLKTRK 739 (765)
Q Consensus 667 ~is-iE~~r~~-~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev----~~~i~~a~~~-i~~~~l~vsPdCGL~~~~ 739 (765)
.|. +-..... -+.+....+ ++-.+++--.|.+. .-.+.+++ .++++.+.+. ++.+++++-|.+|+-..+
T Consensus 103 iINdvs~~~d~~~~~~~~~a~---~~~~vv~m~~d~~G-~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gfigk~ 178 (271)
T 2yci_X 103 MINSTSADQWKMDIFFPMAKK---YEAAIIGLTMNEKG-VPKDANDRSQLAMELVANADAHGIPMTELYIDPLILPVNVA 178 (271)
T ss_dssp EEEEECSCHHHHHHHHHHHHH---HTCEEEEESCBTTB-CCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCCTTTS
T ss_pred EEEECCCCccccHHHHHHHHH---cCCCEEEEecCCCC-CCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCCccccC
Confidence 774 4322111 223443444 23222222122110 11244444 4444444432 345689999999994445
Q ss_pred hhhHHHHHHHHHHH
Q 004263 740 YSEVKPALSNMVAA 753 (765)
Q Consensus 740 ~~~~~~kL~~mv~a 753 (765)
.+.....|+++.+.
T Consensus 179 ~~~~~~~l~~l~~~ 192 (271)
T 2yci_X 179 QEHAVEVLETIRQI 192 (271)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666666544
No 44
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=71.93 E-value=37 Score=37.41 Aligned_cols=154 Identities=12% Similarity=0.144 Sum_probs=79.0
Q ss_pred HHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHc---cCCCCceEEEEeccCChhHHHHHHHc--
Q 004263 588 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNC---GVQDTTQVHTHMCYSNFNDIIHSIMD-- 662 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~---~v~~~~~I~~H~C~g~~~~i~~~l~~-- 662 (765)
.+.+.++.+.|+++|=|--.+-+.+. ...+.++.+++.+..++.+.+ .++.+..|.+-++.. ++++.-++
T Consensus 215 l~~A~~mv~~GAdIIDIGgeSTrPGa--~~Vs~~EE~~Rv~pvI~~l~~~~~~~~~~vpISIDT~~~---~VaeaAL~~~ 289 (442)
T 3mcm_A 215 KLNLDELIQSGAEIIDIGAESTKPDA--KPISIEEEFNKLNEFLEYFKSQLANLIYKPLVSIDTRKL---EVMQKILAKH 289 (442)
T ss_dssp HHHHHHHHHHTCSEEEEECCCCCC------CCHHHHHHHHHHHHHHHHHHTTTCSSCCEEEEECCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCC--CCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCCH---HHHHHHHhhC
Confidence 34456778899999988754444331 235667788888777777655 221146788887754 46677676
Q ss_pred CCccE-EE-EecCCCChhhHHHhhhcccCCceeccccccCC-CCC----------CC-CHHHHHHHHHHHHhh-cCCCcE
Q 004263 663 MDADV-IT-IENSRSDEKLLSVFREGVKYRAGIGPGVYDIH-SPR----------IP-STEEIADRINKMLAV-LESNIL 727 (765)
Q Consensus 663 l~~D~-is-iE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~-s~~----------ve-~~eev~~~i~~a~~~-i~~~~l 727 (765)
.+++. |. +-. ..+-+.+....+ ++-.+++ ...+ .|. +. -.+.+.++++.+.+. ++.+++
T Consensus 290 aGa~i~INDVsg-~~d~~m~~v~a~---~g~~vVl--Mh~~G~P~tmq~~~y~dvv~ev~~~l~~~i~~a~~aGI~~~~I 363 (442)
T 3mcm_A 290 HDIIWMINDVEC-NNIEQKAQLIAK---YNKKYVI--IHNLGITDRNQYLDKENAIDNVCDYIEQKKQILLKHGIAQQNI 363 (442)
T ss_dssp GGGCCEEEECCC-TTHHHHHHHHHH---HTCEEEE--ECC----------------CTHHHHHHHHHHHHHHHTCCGGGE
T ss_pred CCCCEEEEcCCC-CCChHHHHHHHH---hCCeEEE--ECCCCCCccccccCcccHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 78886 42 212 222234444444 2323332 1211 111 11 144556677777654 445899
Q ss_pred EEcCCCCCCCCChhhHHHHHHHHHHH
Q 004263 728 WVNPDCGLKTRKYSEVKPALSNMVAA 753 (765)
Q Consensus 728 ~vsPdCGL~~~~~~~~~~kL~~mv~a 753 (765)
++-|.-||+- +.+....-|+++-+.
T Consensus 364 ilDPGiGF~K-t~~~nl~lL~~l~~l 388 (442)
T 3mcm_A 364 YFDIGFGFGK-KSDTARYLLENIIEI 388 (442)
T ss_dssp EEECCCC-------------CCHHHH
T ss_pred EEeCCCCCCC-CHHHHHHHHHHHHHH
Confidence 9999999854 444445555554443
No 45
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=69.77 E-value=60 Score=34.09 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccE
Q 004263 588 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 667 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~ 667 (765)
.+...++.+.|+++|=|---+-+.+. ...+.++.++..+..++.+.+.. +..|.+-++.. ++++.-++.+++.
T Consensus 36 ~~~a~~~v~~GAdIIDIGgeSTrPGa--~~v~~~eE~~Rv~pvI~~l~~~~--~vpiSIDT~~~---~Va~aAl~aGa~i 108 (314)
T 2vef_A 36 LQQARKLIAEGASMLDIGGESTRPGS--SYVEIEEEIQRVVPVIKAIRKES--DVLISIDTWKS---QVAEAALAAGADL 108 (314)
T ss_dssp HHHHHHHHHTTCSEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHC--CCEEEEECSCH---HHHHHHHHTTCCE
T ss_pred HHHHHHHHHCCCCEEEECCCcCCCCC--CCCCHHHHHHHHHHHHHHHHhhC--CceEEEeCCCH---HHHHHHHHcCCCE
Confidence 34567788999999888764444331 11334567777777766665443 35677777644 4677778889987
Q ss_pred EE
Q 004263 668 IT 669 (765)
Q Consensus 668 is 669 (765)
|.
T Consensus 109 IN 110 (314)
T 2vef_A 109 VN 110 (314)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 46
>4dnh_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati YORK structural genomics research consortium; 2.50A {Sinorhizobium meliloti}
Probab=67.01 E-value=9.1 Score=40.19 Aligned_cols=105 Identities=21% Similarity=0.434 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEE-----------EeccCCCc
Q 004263 180 LIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI-----------ETYFADVP 248 (765)
Q Consensus 180 ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l-----------~tyfg~~~ 248 (765)
-++++..+|.|.+....++|.+.|-+--=+|+--. .-.+-+.++|..+...... .++| ..|||+-.
T Consensus 131 ~l~~V~~AY~EQ~~~Ve~~G~~~ILMASRaLA~~A--~~pdDY~~VY~~vL~q~~~-PVILHWLG~mFDPaL~GYWGs~d 207 (396)
T 4dnh_A 131 SIDDILAAYESQIEAIEAEGGRIILMASRALAAAA--KGPEDYIRVYDRVLSQVKE-PVIIHWLGEMFDPALEGYWGNAD 207 (396)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEECCCHHHHHHC--CSHHHHHHHHHHHHHHCSS-CEEEEEECTTTCGGGTTTTSCSS
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEehhHHHHHHh--CCHHHHHHHHHHHHHhcCC-CEEEEecccccChhhccccCCCC
Confidence 37899999999999999999998766554443211 1246678889888776544 3444 37888531
Q ss_pred -hhh----HHHHhc--CCCccEEEEEeccCCCChhhHhhhCCCCCEEE
Q 004263 249 -AET----YKILTS--LKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLF 289 (765)
Q Consensus 249 -~~~----~~~l~~--l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~ 289 (765)
+.. ++.+.. -. ||||-+-+-+...+.. ++..+|.+-.+.
T Consensus 208 ~~~A~~t~l~lI~~~~~k-VDGIKiSLLDa~~Ei~-lRrrLP~gVrmY 253 (396)
T 4dnh_A 208 HMAAMKTCLDVLEAHAAK-VDGIKISLLSKEKEIV-MRRQLPKGVRMY 253 (396)
T ss_dssp HHHHHHHHHHHHHHTGGG-EEEEEEESCCHHHHHH-HHTSCCTTCEEE
T ss_pred HHHHHHHHHHHHHhChhh-cCceEEeeeccHhHHH-HHHhCCCcceee
Confidence 222 333432 24 9999998865322222 333577754443
No 47
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}
Probab=66.62 E-value=76 Score=33.08 Aligned_cols=152 Identities=9% Similarity=0.058 Sum_probs=82.9
Q ss_pred HHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHc--CC
Q 004263 587 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMD--MD 664 (765)
Q Consensus 587 l~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~--l~ 664 (765)
..+..+++.+.|+++|=|-- + ....+..+.+++++..++...+.. ++.|.+-++.. ++++.-++ .+
T Consensus 39 a~~~A~~~v~~GAdiIDIg~-----g--~~~v~~~eem~rvv~~i~~~~~~~--~vpisIDT~~~---~V~eaaL~~~~G 106 (300)
T 3k13_A 39 ALSIARQQVEDGALVIDVNM-----D--DGLLDARTEMTTFLNLIMSEPEIA--RVPVMIDSSKW---EVIEAGLKCLQG 106 (300)
T ss_dssp HHHHHHHHHHTTCSEEEEEC-----C--CTTSCHHHHHHHHHHHHHTCHHHH--TSCEEEECSCH---HHHHHHHHHCSS
T ss_pred HHHHHHHHHHCCCCEEEECC-----C--CCCCCHHHHHHHHHHHHHHhhhcC--CCeEEEeCCCH---HHHHHHHHhcCC
Confidence 34455667789999977753 1 122456777888888776321111 35577777633 45666666 57
Q ss_pred ccEE-EEecCCCC--h-hhHHHhhhcccCCceeccccccCC-CC-CCCCHHHHHHHHHHHH-hhcC--CCcEEEcCCCC-
Q 004263 665 ADVI-TIENSRSD--E-KLLSVFREGVKYRAGIGPGVYDIH-SP-RIPSTEEIADRINKML-AVLE--SNILWVNPDCG- 734 (765)
Q Consensus 665 ~D~i-siE~~r~~--~-~~L~~~~~~~~~~~~l~~GVvd~~-s~-~ve~~eev~~~i~~a~-~~i~--~~~l~vsPdCG- 734 (765)
++.| ++-....+ + +.+....+ |+-.+++--.|.+ .| ..+..-++.+++.+++ ...| .+++++-|..|
T Consensus 107 a~iINdIs~~~~d~~~~~~~~l~a~---~ga~vV~mh~d~~G~p~t~~~~~~i~~r~~~~~~~~~Gi~~~~IilDPgig~ 183 (300)
T 3k13_A 107 KSIVNSISLKEGEEVFLEHARIIKQ---YGAATVVMAFDEKGQADTAARKIEVCERAYRLLVDKVGFNPHDIIFDPNVLA 183 (300)
T ss_dssp CCEEEEECSTTCHHHHHHHHHHHHH---HTCEEEEESEETTEECCSHHHHHHHHHHHHHHHHHHTCCCGGGEEEECCCCC
T ss_pred CCEEEeCCcccCChhHHHHHHHHHH---hCCeEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCc
Confidence 7765 22221111 1 23444444 3333443333221 11 1223345677777775 4445 48999999997
Q ss_pred CCCCChhh---HHHHHHHHHHH
Q 004263 735 LKTRKYSE---VKPALSNMVAA 753 (765)
Q Consensus 735 L~~~~~~~---~~~kL~~mv~a 753 (765)
|++...+. ....|+++...
T Consensus 184 ~gk~~~~~~~~~~~~l~~l~~l 205 (300)
T 3k13_A 184 VATGIEEHNNYAVDFIEATGWI 205 (300)
T ss_dssp CSSSCGGGTTHHHHHHHHHHHH
T ss_pred cCCChHHhhHHHHHHHHHHHHH
Confidence 77654432 55555555443
No 48
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=66.51 E-value=1.5e+02 Score=32.12 Aligned_cols=148 Identities=11% Similarity=0.110 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCc--EEEe-cccccccCCCCCCCCHHHHHH---HHHHHHHHHHccCCCCceEEEEe
Q 004263 575 PRFETCYQIALAIKDEVEDLEKAGIT--VIQI-DEAALREGLPLRKSEQDFYLK---WAVHSFRITNCGVQDTTQVHTHM 648 (765)
Q Consensus 575 ~~~e~~~~la~al~~ev~~L~~aG~~--~IQi-DEPaL~~~l~l~~~~~~~~l~---~~v~a~~~~~~~v~~~~~I~~H~ 648 (765)
+..++...++.-.++.+..|.+.|+. +||| .|+..... + ..+++.+.+ .+..+.+.+ .++.+|.+|.
T Consensus 131 ~~~~l~~~~~~yt~~~l~~l~~~g~~~~~vqvGNEi~~g~~-~--~~~~~~la~ll~ag~~aVR~v----~p~~~V~ih~ 203 (399)
T 1ur4_A 131 NFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGLA-G--ETDWAKMSQLFNAGSQAVRET----DSNILVALHF 203 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCBT-T--BCCHHHHHHHHHHHHHHHHHH----CTTSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccccccccC-C--cccHHHHHHHHHHHHHHHHHh----CCCCeEEEEe
Confidence 45677778877777888888888865 5765 56654221 1 234544433 334444443 2457899999
Q ss_pred ccCC----hhHHHHHHHc--CCccEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhc
Q 004263 649 CYSN----FNDIIHSIMD--MDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 722 (765)
Q Consensus 649 C~g~----~~~i~~~l~~--l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i 722 (765)
|.+. |.-.++.+.. .++|+|++-.-.. |-.+.+.+.+.++.+.+..
T Consensus 204 ~~~~~~~~~~~~~d~l~~~g~d~DvIG~syYp~----------------------------W~~~l~~l~~~l~~l~~ry 255 (399)
T 1ur4_A 204 TNPETSGRYAWIAETLHRHHVDYDVFASSYYPF----------------------------WHGTLKNLTSVLTSVADTY 255 (399)
T ss_dssp CCTTSTTHHHHHHHHHHHTTCCCSEEEEEECTT----------------------------TSCCHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHcCCCcCeEeEecCcc----------------------------chhhHHHHHHHHHHHHHHh
Confidence 9774 2223455544 3678888763110 0113556666677666555
Q ss_pred CCCcEEEcCCCCCC--------------------CCChhhHHHHHHHHHHHHHHH
Q 004263 723 ESNILWVNPDCGLK--------------------TRKYSEVKPALSNMVAAAKLL 757 (765)
Q Consensus 723 ~~~~l~vsPdCGL~--------------------~~~~~~~~~kL~~mv~aa~~~ 757 (765)
+..-+++-.+|... .++++....-|+.|.++++.+
T Consensus 256 gKpV~v~EtG~~~~~~~~d~~~n~~~~~~~~~~~~~s~~gQa~~l~~l~~~v~~~ 310 (399)
T 1ur4_A 256 GKKVMVAETSYTYTAEDGDGHGNTAPKNGQTLNNPVTVQGQANAVRDVIQAVSDV 310 (399)
T ss_dssp CCEEEEEEECCCSCSCCSSSSCCSSSCTTSCCCSCSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEecCCccCCCCCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 54444444555432 124556667777777766543
No 49
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=65.60 E-value=90 Score=31.36 Aligned_cols=108 Identities=12% Similarity=0.053 Sum_probs=59.7
Q ss_pred HHHHcCCcEEEecccccc-----cCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccE
Q 004263 593 DLEKAGITVIQIDEAALR-----EGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 667 (765)
Q Consensus 593 ~L~~aG~~~IQiDEPaL~-----~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~ 667 (765)
.+.+.|+++||+-|+... .. .+..++++.+...-.. +... +..+.+|- -++...++++|+
T Consensus 51 ~al~~Gv~~vqlR~K~~~~~~~~~~-----l~~~~~~~~a~~l~~l-~~~~--~~~liInd-------~~~lA~~~gAdG 115 (243)
T 3o63_A 51 AALAGGVDIIQLRDKGSPGELRFGP-----LQARDELAACEILADA-AHRY--GALFAVND-------RADIARAAGADV 115 (243)
T ss_dssp HHHHTTCSEEEECCTTCHHHHHHCS-----CCHHHHHHHHHHHHHH-HHHT--TCEEEEES-------CHHHHHHHTCSE
T ss_pred HHHHCCCCEEEEccCCCCccccccC-----CCHHHHHHHHHHHHHH-HHhh--CCEEEEeC-------HHHHHHHhCCCE
Confidence 445789999999988732 11 1234566655544433 3332 35677772 255566789999
Q ss_pred EEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcC
Q 004263 668 ITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNP 731 (765)
Q Consensus 668 isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsP 731 (765)
+++....-....++.+.. .+..||.-+ -+++|+.. +.+ .+++-+.++|
T Consensus 116 VHLg~~dl~~~~~r~~~~---~~~~iG~S~--------ht~~Ea~~----A~~-~GaDyI~vgp 163 (243)
T 3o63_A 116 LHLGQRDLPVNVARQILA---PDTLIGRST--------HDPDQVAA----AAA-GDADYFCVGP 163 (243)
T ss_dssp EEECTTSSCHHHHHHHSC---TTCEEEEEE--------CSHHHHHH----HHH-SSCSEEEECC
T ss_pred EEecCCcCCHHHHHHhhC---CCCEEEEeC--------CCHHHHHH----Hhh-CCCCEEEEcC
Confidence 999843323333333321 134444432 34555433 322 4667777776
No 50
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=64.25 E-value=1e+02 Score=29.54 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEE
Q 004263 589 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 668 (765)
Q Consensus 589 ~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~i 668 (765)
+.++.+.++|+++||+++|... .....+.+ ..++..+... ++.+.++ +-++...++++|++
T Consensus 30 ~~~~~~~~~G~~~i~l~~~~~~---------~~~~~~~~-~~l~~~~~~~--~v~v~v~-------~~~~~a~~~gad~v 90 (215)
T 1xi3_A 30 ESVREALEGGATAIQMRIKNAP---------TREMYEIG-KTLRQLTREY--DALFFVD-------DRVDVALAVDADGV 90 (215)
T ss_dssp HHHHHHHHTTCSEEEECCCSCC---------HHHHHHHH-HHHHHHHHHT--TCEEEEE-------SCHHHHHHHTCSEE
T ss_pred HHHHHHHHCCCCEEEECCCCCC---------HHHHHHHH-HHHHHHHHHc--CCeEEEc-------ChHHHHHHcCCCEE
Confidence 4456677899999999987532 23333332 2334433332 3445554 22567788899999
Q ss_pred EEec
Q 004263 669 TIEN 672 (765)
Q Consensus 669 siE~ 672 (765)
.+..
T Consensus 91 ~l~~ 94 (215)
T 1xi3_A 91 QLGP 94 (215)
T ss_dssp EECT
T ss_pred EECC
Confidence 9974
No 51
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=62.58 E-value=1.3e+02 Score=30.60 Aligned_cols=148 Identities=11% Similarity=0.100 Sum_probs=79.2
Q ss_pred HHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcC--C
Q 004263 587 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDM--D 664 (765)
Q Consensus 587 l~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l--~ 664 (765)
..+.++.+.+.|+++|-|-- + ....+..+.+++++..++.. .+..|.+-++.. ++++.-++. +
T Consensus 27 a~~~a~~~v~~GAdiIDIg~-----g--~~~v~~~ee~~rvv~~i~~~-----~~~pisIDT~~~---~v~~aAl~a~~G 91 (262)
T 1f6y_A 27 VQEWARRQEEGGARALDLNV-----G--PAVQDKVSAMEWLVEVTQEV-----SNLTLCLDSTNI---KAIEAGLKKCKN 91 (262)
T ss_dssp HHHHHHHHHHHTCSEEEEBC-----C------CHHHHHHHHHHHHHTT-----CCSEEEEECSCH---HHHHHHHHHCSS
T ss_pred HHHHHHHHHHCCCcEEEECC-----C--CCCCChHHHHHHHHHHHHHh-----CCCeEEEeCCCH---HHHHHHHhhCCC
Confidence 34455677789999998874 1 11245667788888877752 146788887743 456666665 8
Q ss_pred ccEEE-EecCCCCh-hhHHHhhhcccCCceeccccccCCCCCCCCH----HHHHHHHHHHHhh-cCCCcEEEcCCCCCCC
Q 004263 665 ADVIT-IENSRSDE-KLLSVFREGVKYRAGIGPGVYDIHSPRIPST----EEIADRINKMLAV-LESNILWVNPDCGLKT 737 (765)
Q Consensus 665 ~D~is-iE~~r~~~-~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~----eev~~~i~~a~~~-i~~~~l~vsPdCGL~~ 737 (765)
++.|. +-....++ +.+....+ ++-.+++=-.|.+. .-.+. +...++++.+.+. ++.+++++-|..|...
T Consensus 92 a~iINdvs~~~d~~~~~~~~~a~---~~~~vvlmh~~~~G-~p~t~~~~~~~~~~~~~~a~~~Gi~~~~IilDPg~g~~g 167 (262)
T 1f6y_A 92 RAMINSTNAEREKVEKLFPLAVE---HGAALIGLTMNKTG-IPKDSDTRLAFAMELVAAADEFGLPMEDLYIDPLILPAN 167 (262)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHH---TTCEEEEESCCSSC-SCSSHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCCTT
T ss_pred CCEEEECCCCcccHHHHHHHHHH---hCCcEEEEcCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCCcccEEEeCCCCcCC
Confidence 88773 43211122 33444444 23222211111110 11123 3334455555432 3456999999998434
Q ss_pred CChhhHHHHHHHHHHH
Q 004263 738 RKYSEVKPALSNMVAA 753 (765)
Q Consensus 738 ~~~~~~~~kL~~mv~a 753 (765)
.+.+.....|+++.+.
T Consensus 168 ~~~~~~~~~l~~l~~l 183 (262)
T 1f6y_A 168 VAQDHAPEVLKTLQQI 183 (262)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHH
Confidence 4545566666666544
No 52
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=61.95 E-value=1.1e+02 Score=31.70 Aligned_cols=148 Identities=8% Similarity=0.125 Sum_probs=79.2
Q ss_pred HHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEE
Q 004263 589 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 668 (765)
Q Consensus 589 ~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~i 668 (765)
+...++.+.|+++|=|---+-+.+. ...+.++.++..+..++.+.+. +..|.+-++.. ++++.-++.+++.|
T Consensus 56 ~~a~~~v~~GAdIIDIGgeSTrPga--~~v~~~eE~~Rv~pvI~~l~~~---~vpiSIDT~~~---~Va~aAl~aGa~iI 127 (294)
T 2dqw_A 56 ERAREMVAEGADILDLGAESTRPGA--APVPVEEEKRRLLPVLEAVLSL---GVPVSVDTRKP---EVAEEALKLGAHLL 127 (294)
T ss_dssp HHHHHHHHHTCSEEEEECC-------------CCHHHHHHHHHHHHHTT---CSCEEEECSCH---HHHHHHHHHTCSEE
T ss_pred HHHHHHHHCCCCEEEECCCcCCCCC--CCCCHHHHHHHHHHHHHHHHhC---CCeEEEECCCH---HHHHHHHHhCCCEE
Confidence 3556778899999988765544331 1234456677778888777653 45677777644 46777777788866
Q ss_pred EEecCC-CChhhHHHhhhcccCCceecccccc-CC------CCCCCC-----HHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 004263 669 TIENSR-SDEKLLSVFREGVKYRAGIGPGVYD-IH------SPRIPS-----TEEIADRINKMLAVLESNILWVNPDCGL 735 (765)
Q Consensus 669 siE~~r-~~~~~L~~~~~~~~~~~~l~~GVvd-~~------s~~ve~-----~eev~~~i~~a~~~i~~~~l~vsPdCGL 735 (765)
. +.+. .+-+.+....+ + +-.+++--.+ +. .+.-++ .+.+.++++.+.+ .|..++++-|..||
T Consensus 128 N-dVsg~~d~~m~~v~a~-~--~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~-~Gi~~IilDPG~Gf 202 (294)
T 2dqw_A 128 N-DVTGLRDERMVALAAR-H--GVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALS-AGVPQVVLDPGFGF 202 (294)
T ss_dssp E-CSSCSCCHHHHHHHHH-H--TCEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHH-TTCSCEEEECCTTS
T ss_pred E-ECCCCCChHHHHHHHH-h--CCCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHH-CCCCcEEEcCCCCc
Confidence 3 3211 23344554444 2 3222221111 10 111122 3344455555543 56669999999998
Q ss_pred CCCChhhHHHHHHHH
Q 004263 736 KTRKYSEVKPALSNM 750 (765)
Q Consensus 736 ~~~~~~~~~~kL~~m 750 (765)
+. +.++...-|+++
T Consensus 203 ~k-t~~~n~~ll~~l 216 (294)
T 2dqw_A 203 GK-LLEHNLALLRRL 216 (294)
T ss_dssp SC-CHHHHHHHHHTH
T ss_pred cc-CHHHHHHHHHHH
Confidence 64 454555555555
No 53
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=59.60 E-value=23 Score=40.44 Aligned_cols=136 Identities=18% Similarity=0.258 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccC---------CCchhhH
Q 004263 182 DKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFA---------DVPAETY 252 (765)
Q Consensus 182 ~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg---------~~~~~~~ 252 (765)
+++...|++.++.|.+.||+.+-+.= -.+-.+..++..+.+.... ...++++.-|. ++ .+.+
T Consensus 122 ~e~~~~~~~qi~~l~~~gvD~l~~ET-----~~~~~Ea~aa~~a~~~~~~---~~Pv~vS~t~~~~g~~~~G~~~-~~~~ 192 (566)
T 1q7z_A 122 EEFYENFRETVEIMVEEGVDGIIFET-----FSDILELKAAVLAAREVSR---DVFLIAHMTFDEKGRSLTGTDP-ANFA 192 (566)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEE-----ECCHHHHHHHHHHHHHHCS---SSCEEEEECCCTTSCCTTSCCH-HHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEec-----cCCHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCCeeCCCCcH-HHHH
Confidence 67888999999999999999876652 1223345555555444322 24577765552 23 5667
Q ss_pred HHHhcCCCccEEEEEeccCCCChhhHhhhCC--CCCEEEE----EE---eeCCCCCcCCHHHHHHHHHHHhhhcCCCcEE
Q 004263 253 KILTSLKGVTGFGFDLIRGTKTLDLIKTEFP--LGKYLFA----GV---VDGRNIWANDLASSLTTLQDLAGTVGKDKVV 323 (765)
Q Consensus 253 ~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p--~~k~l~l----Gv---Vdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~ 323 (765)
..+..++ ++++++....+++.+..+.+.+. .++.+++ |. .|++..|..++++..+.+++..+. | ==+
T Consensus 193 ~~l~~~~-~~avG~NC~~gp~~~~~~l~~l~~~~~~p~~vyPNaG~p~~~~~~~~~~~~p~~~a~~~~~~~~~-G--~~i 268 (566)
T 1q7z_A 193 ITFDELD-IDALGINCSLGPEEILPIFQELSQYTDKFLVVEPNAGKPIVENGKTVYPLKPHDFAVHIDSYYEL-G--VNI 268 (566)
T ss_dssp HHHHTSS-CSEEEEESSSCHHHHHHHHHHHHHTCCSEEEEECCSSSCEEETTEEECCCCHHHHHTTHHHHHHT-T--CSE
T ss_pred HHhhccC-CCEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCcccCCccccCCCHHHHHHHHHHHHHc-C--CcE
Confidence 7778888 99999999766555544433221 1222221 22 377777888888887777776552 3 124
Q ss_pred EeCCCCC
Q 004263 324 VSTSCSL 330 (765)
Q Consensus 324 vspsC~L 330 (765)
|.==||-
T Consensus 269 iGGCCGT 275 (566)
T 1q7z_A 269 FGGCCGT 275 (566)
T ss_dssp ECCCTTC
T ss_pred EccccCC
Confidence 5667775
No 54
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=57.07 E-value=33 Score=33.84 Aligned_cols=72 Identities=17% Similarity=0.310 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCcEEEecc---cccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCC
Q 004263 588 KDEVEDLEKAGITVIQIDE---AALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMD 664 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDE---PaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~ 664 (765)
.+.++.+.+.|+++||++. |... .+ .... ..+..++.. . +..+.+|+..-+..+.++.+.+++
T Consensus 26 ~~~i~~~~~~G~d~i~l~~~dg~f~~-~~---~~~~-----~~i~~l~~~---~--~~~~~v~l~vnd~~~~v~~~~~~G 91 (230)
T 1rpx_A 26 GEQVKAIEQAGCDWIHVDVMDGRFVP-NI---TIGP-----LVVDSLRPI---T--DLPLDVHLMIVEPDQRVPDFIKAG 91 (230)
T ss_dssp HHHHHHHHHTTCCCEEEEEEBSSSSS-CB---CCCH-----HHHHHHGGG---C--CSCEEEEEESSSHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCEEEEeeccCCccc-cc---ccCH-----HHHHHHHhc---c--CCcEEEEEEecCHHHHHHHHHHcC
Confidence 3456667889999999975 2211 11 1111 122223322 2 235677877666445677788899
Q ss_pred ccEEEEecC
Q 004263 665 ADVITIENS 673 (765)
Q Consensus 665 ~D~isiE~~ 673 (765)
+|++++-..
T Consensus 92 ad~v~vh~~ 100 (230)
T 1rpx_A 92 ADIVSVHCE 100 (230)
T ss_dssp CSEEEEECS
T ss_pred CCEEEEEec
Confidence 999987743
No 55
>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2}
Probab=55.41 E-value=43 Score=35.86 Aligned_cols=92 Identities=14% Similarity=0.133 Sum_probs=57.2
Q ss_pred ceEEEEec-cC-ChhHHHHHHHcCCcc--EE---EEecCCCChhhHHHhhhcccCCceeccccccC------CCCCCCCH
Q 004263 642 TQVHTHMC-YS-NFNDIIHSIMDMDAD--VI---TIENSRSDEKLLSVFREGVKYRAGIGPGVYDI------HSPRIPST 708 (765)
Q Consensus 642 ~~I~~H~C-~g-~~~~i~~~l~~l~~D--~i---siE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~------~s~~ve~~ 708 (765)
..|++|+. .| ...++++.|.+.+++ .+ +...+..+.+....+.+ .|-.|+++-+-+ ...+.++-
T Consensus 204 lPV~iH~~gr~~a~~e~l~iL~e~g~~~~~vvi~H~~~s~~~~e~a~~~l~---~G~~I~f~g~gt~~~f~~~~~~~~~d 280 (364)
T 3k2g_A 204 LPLMVHLPGWFRLAHRVLDLVEEEGADLRHTVLCHMNPSHMDPVYQATLAQ---RGAFLEFDMIGMDFFYADQGVQCPSD 280 (364)
T ss_dssp CCEEEECCTTSCCHHHHHHHHHHTTCCGGGEEECCCGGGTTCHHHHHHHHH---HTCEEEECCTTCCCEETTTTEECCCH
T ss_pred CeEEEecCCCCccHHHHHHHHHHcCCCCCceEEECCCCCCCCHHHHHHHHh---CCcEEEecCCcccccccccccccccH
Confidence 45999973 43 345777777766554 33 33322225555555544 144555553311 01124666
Q ss_pred HHHHHHHHHHHhhcCCCcEEEcCCCCCC
Q 004263 709 EEIADRINKMLAVLESNILWVNPDCGLK 736 (765)
Q Consensus 709 eev~~~i~~a~~~i~~~~l~vsPdCGL~ 736 (765)
+.-.+.++++++..+.+++.+++||+..
T Consensus 281 ~~ra~~l~~lv~~gp~drilleTD~p~~ 308 (364)
T 3k2g_A 281 DEVARAILGLADHGYLDRILLSHDVFVK 308 (364)
T ss_dssp HHHHHHHHHHHHTTCGGGEEECCCCCSG
T ss_pred HHHHHHHHHHHHhCCcccEEEeCCCCCC
Confidence 7788899999999999999999999753
No 56
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...
Probab=54.58 E-value=71 Score=33.41 Aligned_cols=90 Identities=16% Similarity=0.046 Sum_probs=52.7
Q ss_pred ceEEEEec---cCChhHHHHHHHcCCcc--EEEEe-cC-CCChhhHHHhhhcccCCceeccccccCCC--C---------
Q 004263 642 TQVHTHMC---YSNFNDIIHSIMDMDAD--VITIE-NS-RSDEKLLSVFREGVKYRAGIGPGVYDIHS--P--------- 703 (765)
Q Consensus 642 ~~I~~H~C---~g~~~~i~~~l~~l~~D--~isiE-~~-r~~~~~L~~~~~~~~~~~~l~~GVvd~~s--~--------- 703 (765)
..|++|+. .... ++++.|.+.+++ .+.+. .. ..+.+....+.+ .|-.|+++.+-.-+ +
T Consensus 162 lPv~iH~~~~~r~a~-e~l~iL~~~g~~~~~~~i~H~f~~~~~e~a~~~~~---~G~~i~~~~~G~~tf~~~~~~~~~~~ 237 (330)
T 2ob3_A 162 VPVTTHTAASQRDGE-QQAAIFESEGLSPSRVCIGHSDDTDDLSYLTALAA---RGYLIGLDHIPYSAIGLEDNASASAL 237 (330)
T ss_dssp CCEEEECCGGGTHHH-HHHHHHHHTTCCGGGEEECSGGGCCCHHHHHHHHH---TTCEEEECCTTCCCTTCTTCHHHHHH
T ss_pred CeEEEECCCCCCCHH-HHHHHHHHcCcCcccEEEeCCCCCCCHHHHHHHHh---CCCEEEeCCCcccccccccccccccc
Confidence 46899973 2233 667767665553 33444 11 124555555554 24455554311100 0
Q ss_pred -CCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 004263 704 -RIPSTEEIADRINKMLAVLESNILWVNPDCGL 735 (765)
Q Consensus 704 -~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL 735 (765)
.+.+.+.-.+.++++++.++.+++.+++||+.
T Consensus 238 ~~~~~~~~~~~~l~~~~~~~p~drilleTD~p~ 270 (330)
T 2ob3_A 238 LGIRSWQTRALLIKALIDQGYMKQILVSNDWTF 270 (330)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCGGGEEECCCCCS
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCC
Confidence 01344455677899999999999999999995
No 57
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A*
Probab=53.79 E-value=1.1e+02 Score=32.38 Aligned_cols=144 Identities=15% Similarity=0.084 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHH-HHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCC-hhHHHH
Q 004263 581 YQIALAIKDEVE-DLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSN-FNDIIH 658 (765)
Q Consensus 581 ~~la~al~~ev~-~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~-~~~i~~ 658 (765)
++|+..+.+++. .+-+.|++...| |=++... + .. +...+.+....+.+.+- +..|++|+..|. -.+.++
T Consensus 134 ~~L~~~~~~e~~~gIg~tg~k~g~I-Eigld~~-~---~~-~~q~~~f~aq~~lA~~~---glPViiH~~~gr~a~~~~~ 204 (339)
T 3gtx_A 134 SEIYEMMRTEVTEGIAGTGIRAGVI-KLASSRD-A---IT-PYEQLFFRAAARVQRET---GVPIITHTQEGQQGPQQAE 204 (339)
T ss_dssp HHHHHHHHHHHHTCSTTSSCCCSEE-EEECCSS-C---CC-HHHHHHHHHHHHHHHHH---CCCEEEECSTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCcccceE-EEEcCCC-C---CC-HHHHHHHHHHHHHHHHH---CCeEEEeCCCCcCHHHHHH
Confidence 445544444331 112234444455 5555432 1 11 22334445555544431 345999985432 224677
Q ss_pred HHHcCCcc--EEEEe-cCC-CChhhHHHhhhcccCCceeccccccCC-CCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCC
Q 004263 659 SIMDMDAD--VITIE-NSR-SDEKLLSVFREGVKYRAGIGPGVYDIH-SPRIPSTEEIADRINKMLAVLESNILWVNPDC 733 (765)
Q Consensus 659 ~l~~l~~D--~isiE-~~r-~~~~~L~~~~~~~~~~~~l~~GVvd~~-s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdC 733 (765)
.|.+.+++ .+.+- ..+ .+++....+.+ .|-.|+++-+-+. ....++-..-.+.++++++..+.+++.+++||
T Consensus 205 iL~~~~~~~~~~vi~H~~~~~~~e~a~~~l~---~G~~i~~~g~~t~~~~~~p~~~~~~~~l~~li~~~~~drilleTD~ 281 (339)
T 3gtx_A 205 LLTSLGADPARIMIGHMDGNTDPAYHRETLR---HGVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYADRLLLSHDS 281 (339)
T ss_dssp HHHHTTCCGGGEEECCGGGCCCHHHHHHHHT---TTCEEEECCTTCCSSTTCCCHHHHHHHHHHHHHTTCGGGEEECCCC
T ss_pred HHHHcCCCcccEEEEccCCCCCHHHHHHHHH---cCcEEEEccCccccccCCCchHHHHHHHHHHHHhcCCCeEEEecCC
Confidence 77666554 33333 112 34666665554 2556666544211 11123433566788888898899999999999
Q ss_pred CCC
Q 004263 734 GLK 736 (765)
Q Consensus 734 GL~ 736 (765)
+..
T Consensus 282 p~~ 284 (339)
T 3gtx_A 282 IWH 284 (339)
T ss_dssp EEE
T ss_pred Ccc
Confidence 963
No 58
>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis}
Probab=53.05 E-value=1.8e+02 Score=30.94 Aligned_cols=146 Identities=13% Similarity=0.071 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHH-HHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEe-ccCCCchhhHHHHhcC-
Q 004263 182 DKIIPVYKEVVAEL-KAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIET-YFADVPAETYKILTSL- 258 (765)
Q Consensus 182 ~~L~~~y~~~l~~L-~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~t-yfg~~~~~~~~~l~~l- 258 (765)
++|...+..++... ...|++-.-|=|-.+.....+.+.+.|....+ ++...+...|++|+ -.|.-..+.+..|.+-
T Consensus 140 ~~L~~~~~~ei~~gi~~t~vkag~IGEiGld~~~t~~q~~~f~aq~~-~A~~~~glPV~iH~~r~~~a~~e~l~iL~e~~ 218 (365)
T 3rhg_A 140 DAMAKMIDDELNIGIDGTDIRAGMIGEIGVSPFFTDGEKNSLRAAAL-AQNNNPYASMNIHMPGWQRRGDEVLDILLTEM 218 (365)
T ss_dssp HHHHHHHHHHHHTCSTTSSCCCCEEEEEECCTTCCHHHHHHHHHHHH-HHTTCTTCEEEEECCTTSCCHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhccccCCceeEEEEEEEcCCCCCHHHHHHHHHHHH-HHHHhcCCcEEEECCCCCcCHHHHHHHHHhcc
Confidence 55555554444331 11234433333433333345556666666543 44434134588886 4443325667777654
Q ss_pred CC-ccEE---EEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCC-Cc-----CCHHHHHHHHHHHhhhcCCCcEEEeCCC
Q 004263 259 KG-VTGF---GFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNI-WA-----NDLASSLTTLQDLAGTVGKDKVVVSTSC 328 (765)
Q Consensus 259 ~~-vd~l---~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~-~~-----ed~~~~~~~l~~~~~~~~~~~l~vspsC 328 (765)
.. ...+ |++- +.++++...+.+..+-.|+++-+ |+++ .. .+-++-.+.|+++.+..+.+||.|++||
T Consensus 219 ~~~~~~vvi~H~~r--s~~~~e~a~~~l~~G~~I~~~g~-g~~~tf~~~~~~~~d~~~a~~l~~li~~g~~drilleTD~ 295 (365)
T 3rhg_A 219 GCDPAKISLAHSDP--SGKDIDYQCKMLDRGVWLEFDMI-GLDISFPKEGAAPSVMDTVEAVATLIERGYGNQIVLSHDV 295 (365)
T ss_dssp CCCGGGEEESCCGG--GTTCHHHHHHHHHTTCEEEECCT-TCCCBCSSSCBCCCHHHHHHHHHHHHHTTCGGGEEECCCC
T ss_pred CCCCCceEEecCCC--CCCCHHHHHHHHhCCCEEEecCC-CccccccccccccchHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 30 3333 3331 11455554432223456777654 3221 11 1233456678888887778999999999
Q ss_pred CCc
Q 004263 329 SLL 331 (765)
Q Consensus 329 ~L~ 331 (765)
+.+
T Consensus 296 p~l 298 (365)
T 3rhg_A 296 FLK 298 (365)
T ss_dssp CSG
T ss_pred CCC
Confidence 885
No 59
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=52.68 E-value=85 Score=31.08 Aligned_cols=121 Identities=10% Similarity=0.089 Sum_probs=64.0
Q ss_pred HHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEecc--
Q 004263 193 AELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR-- 270 (765)
Q Consensus 193 ~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~-- 270 (765)
+.+.++|+++|++.++.-... ......+....+.+.. ...+++..+.-+. .+ +..+.+.. +|++++--..
T Consensus 37 ~~~~~~Gad~i~v~d~~~~~~----~~~~~~~~i~~i~~~~-~ipvi~~ggI~~~-~~-~~~~~~~G-ad~V~lg~~~l~ 108 (253)
T 1thf_D 37 KFYSEIGIDELVFLDITASVE----KRKTMLELVEKVAEQI-DIPFTVGGGIHDF-ET-ASELILRG-ADKVSINTAAVE 108 (253)
T ss_dssp HHHHHTTCCEEEEEESSCSSS----HHHHHHHHHHHHHTTC-CSCEEEESSCCSH-HH-HHHHHHTT-CSEEEESHHHHH
T ss_pred HHHHHcCCCEEEEECCchhhc----CCcccHHHHHHHHHhC-CCCEEEeCCCCCH-HH-HHHHHHcC-CCEEEEChHHHh
Confidence 556788999999998642211 1112223333444433 3568888666555 44 66667788 9999886543
Q ss_pred CCCChhhHhhhCCCCCE-EEEEEe--eC-----CCCCcC----CHHHHHHHHHHHhhhcCCCcEEEe
Q 004263 271 GTKTLDLIKTEFPLGKY-LFAGVV--DG-----RNIWAN----DLASSLTTLQDLAGTVGKDKVVVS 325 (765)
Q Consensus 271 ~~~~l~~l~~~~p~~k~-l~lGvV--dg-----rn~~~e----d~~~~~~~l~~~~~~~~~~~l~vs 325 (765)
++..+..+.+.++.++. +++-+- +| -..|.+ +..+. ++++.+ .|.+.+.++
T Consensus 109 ~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~---~~~~~~-~G~~~i~~~ 171 (253)
T 1thf_D 109 NPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDW---VVEVEK-RGAGEILLT 171 (253)
T ss_dssp CTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHH---HHHHHH-TTCSEEEEE
T ss_pred ChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHH---HHHHHH-CCCCEEEEE
Confidence 33334444433543332 444331 11 023443 34443 444433 466677775
No 60
>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis}
Probab=52.53 E-value=1.4e+02 Score=31.77 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=57.9
Q ss_pred CceEEEEecc-C-ChhHHHHHHHcC-Ccc--EEEEe---cCCCChhhHHHhhhcccCCceecccccc--CCCC---CCCC
Q 004263 641 TTQVHTHMCY-S-NFNDIIHSIMDM-DAD--VITIE---NSRSDEKLLSVFREGVKYRAGIGPGVYD--IHSP---RIPS 707 (765)
Q Consensus 641 ~~~I~~H~C~-g-~~~~i~~~l~~l-~~D--~isiE---~~r~~~~~L~~~~~~~~~~~~l~~GVvd--~~s~---~ve~ 707 (765)
+..|++|+.. | ...+++..|.+. +++ .+.+- .+..+++....+.+ .|-.|+++-+- ..-+ ..++
T Consensus 193 glPV~iH~~r~~~a~~e~l~iL~e~~~~~~~~vvi~H~~rs~~~~e~a~~~l~---~G~~I~~~g~g~~~tf~~~~~~~~ 269 (365)
T 3rhg_A 193 YASMNIHMPGWQRRGDEVLDILLTEMGCDPAKISLAHSDPSGKDIDYQCKMLD---RGVWLEFDMIGLDISFPKEGAAPS 269 (365)
T ss_dssp TCEEEEECCTTSCCHHHHHHHHTTTTCCCGGGEEESCCGGGTTCHHHHHHHHH---TTCEEEECCTTCCCBCSSSCBCCC
T ss_pred CCcEEEECCCCCcCHHHHHHHHHhccCCCCCceEEecCCCCCCCHHHHHHHHh---CCCEEEecCCCccccccccccccc
Confidence 4679999733 2 345777777665 554 34333 12235565555554 24455555431 1011 1345
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 004263 708 TEEIADRINKMLAVLESNILWVNPDCGLKT 737 (765)
Q Consensus 708 ~eev~~~i~~a~~~i~~~~l~vsPdCGL~~ 737 (765)
-+.-.+.++++++..+.+++.+++||+..+
T Consensus 270 d~~~a~~l~~li~~g~~drilleTD~p~l~ 299 (365)
T 3rhg_A 270 VMDTVEAVATLIERGYGNQIVLSHDVFLKQ 299 (365)
T ss_dssp HHHHHHHHHHHHHTTCGGGEEECCCCCSGG
T ss_pred hHHHHHHHHHHHHhCCCCcEEEeCCCCCCC
Confidence 666778899999999999999999998754
No 61
>2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae}
Probab=52.03 E-value=2.1e+02 Score=32.36 Aligned_cols=76 Identities=11% Similarity=0.205 Sum_probs=52.6
Q ss_pred HHHHHHHHcC-----CcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHcc-CC--CCceEEEEeccCChhHHHHHH
Q 004263 589 DEVEDLEKAG-----ITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCG-VQ--DTTQVHTHMCYSNFNDIIHSI 660 (765)
Q Consensus 589 ~ev~~L~~aG-----~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~-v~--~~~~I~~H~C~g~~~~i~~~l 660 (765)
+.+..+.+.| +++|=|---+-+-+. ...+.++.++..+..++.+.+. .+ .++.|.+-++.. ++++.-
T Consensus 253 ~~a~~mv~~G~~~~~AdIIDIGgeSTRPGa--~~vs~eEEl~RvvpvI~~i~~~~~~~~~~vpISIDT~~a---~VaeaA 327 (545)
T 2bmb_A 253 NDIIKLCKDALYLHESVIIDVGGCSTRPNS--IQASEEEEIRRSIPLIKAIRESTELPQDKVILSIDTYRS---NVAKEA 327 (545)
T ss_dssp HHHHHHHHHHHTTCSCEEEEEECSCCSTTC--CCCCHHHHHHHHHHHHHHHHHCSSSCGGGEEEEEECCCH---HHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEEECCCCCCCCC--CCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCcH---HHHHHH
Confidence 3456777889 999888765555442 2356788888888888887641 11 146688888755 467888
Q ss_pred HcCCccEEE
Q 004263 661 MDMDADVIT 669 (765)
Q Consensus 661 ~~l~~D~is 669 (765)
++.++|.|.
T Consensus 328 l~aGadIIN 336 (545)
T 2bmb_A 328 IKVGVDIIN 336 (545)
T ss_dssp HHTTCCEEE
T ss_pred HHcCCCEEE
Confidence 888999884
No 62
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A*
Probab=50.98 E-value=75 Score=33.55 Aligned_cols=130 Identities=14% Similarity=0.084 Sum_probs=70.7
Q ss_pred cCCCeEEeecccccc-CCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCC-ccEEEEEeccCCCCh
Q 004263 198 AGATWIQFDEPTLVL-DLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKG-VTGFGFDLIRGTKTL 275 (765)
Q Consensus 198 ~G~~~VQiDEP~L~~-d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~-vd~l~lD~~~~~~~l 275 (765)
.|++.+.| |-.|.. ...+.+.+.|....+ ++.... ..|++|+-.|.-..+.++.|.+... ...+.+--..+.+++
T Consensus 151 tg~k~g~I-Eigld~~~~~~~q~~~f~aq~~-lA~~~g-lPViiH~~~gr~a~~~~~iL~~~~~~~~~~vi~H~~~~~~~ 227 (339)
T 3gtx_A 151 TGIRAGVI-KLASSRDAITPYEQLFFRAAAR-VQRETG-VPIITHTQEGQQGPQQAELLTSLGADPARIMIGHMDGNTDP 227 (339)
T ss_dssp SSCCCSEE-EEECCSSCCCHHHHHHHHHHHH-HHHHHC-CCEEEECSTTCCHHHHHHHHHHTTCCGGGEEECCGGGCCCH
T ss_pred cCcccceE-EEEcCCCCCCHHHHHHHHHHHH-HHHHHC-CeEEEeCCCCcCHHHHHHHHHHcCCCcccEEEEccCCCCCH
Confidence 34555666 766654 345556666666544 323222 4588887554221235666665430 334433222212456
Q ss_pred hhHhhhCCCCCEEEEEEeeCCCCCc--CCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 004263 276 DLIKTEFPLGKYLFAGVVDGRNIWA--NDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (765)
Q Consensus 276 ~~l~~~~p~~k~l~lGvVdgrn~~~--ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~ 331 (765)
+..++.+..+-.|+++-+- ..... .+-.+-.+.++++.+..+.+||.+++||+..
T Consensus 228 e~a~~~l~~G~~i~~~g~~-t~~~~~~p~~~~~~~~l~~li~~~~~drilleTD~p~~ 284 (339)
T 3gtx_A 228 AYHRETLRHGVSIAFDRIG-LQGMVGTPTDAERLSVLTTLLGEGYADRLLLSHDSIWH 284 (339)
T ss_dssp HHHHHHHTTTCEEEECCTT-CCSSTTCCCHHHHHHHHHHHHHTTCGGGEEECCCCEEE
T ss_pred HHHHHHHHcCcEEEEccCc-cccccCCCchHHHHHHHHHHHHhcCCCeEEEecCCCcc
Confidence 5555433345567775541 11111 1222455677888887888999999999975
No 63
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=49.36 E-value=2.1e+02 Score=30.90 Aligned_cols=125 Identities=21% Similarity=0.230 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCC--CeEEe-eccccccCC---ChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCch
Q 004263 176 SLLSLIDKIIPVYKEVVAELKAAGA--TWIQF-DEPTLVLDL---DSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPA 249 (765)
Q Consensus 176 ~~~~ll~~L~~~y~~~l~~L~~~G~--~~VQi-DEP~L~~d~---~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~ 249 (765)
+..++...+..--.+.++.|.+.|+ ++||+ .|+.....- -+...+.+..+|..+.+..+.++|++|..++.- .
T Consensus 131 ~~~~l~~~~~~yt~~~l~~l~~~g~~~~~vqvGNEi~~g~~~~~~~~~la~ll~ag~~aVR~v~p~~~V~ih~~~~~~-~ 209 (399)
T 1ur4_A 131 NFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGLAGETDWAKMSQLFNAGSQAVRETDSNILVALHFTNPET-S 209 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEECCTTS-T
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccccccccCCcccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCcc-h
Confidence 5567777777666778889988885 57766 576553311 122356677777777654455678888777642 2
Q ss_pred hh----HHHHhcC--CCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEE
Q 004263 250 ET----YKILTSL--KGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVV 323 (765)
Q Consensus 250 ~~----~~~l~~l--~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~ 323 (765)
+. ++.+... . +|.|++.+- |. |-.+++.+.+.|+.+.+..+ +.|+
T Consensus 210 ~~~~~~~d~l~~~g~d-~DvIG~syY-------------p~--------------W~~~l~~l~~~l~~l~~ryg-KpV~ 260 (399)
T 1ur4_A 210 GRYAWIAETLHRHHVD-YDVFASSYY-------------PF--------------WHGTLKNLTSVLTSVADTYG-KKVM 260 (399)
T ss_dssp THHHHHHHHHHHTTCC-CSEEEEEEC-------------TT--------------TSCCHHHHHHHHHHHHHHHC-CEEE
T ss_pred HHHHHHHHHHHHcCCC-cCeEeEecC-------------cc--------------chhhHHHHHHHHHHHHHHhC-CcEE
Confidence 22 3544433 4 666666642 21 22346777777888766666 4565
Q ss_pred E-eCCCCC
Q 004263 324 V-STSCSL 330 (765)
Q Consensus 324 v-spsC~L 330 (765)
| =+.|..
T Consensus 261 v~EtG~~~ 268 (399)
T 1ur4_A 261 VAETSYTY 268 (399)
T ss_dssp EEEECCCS
T ss_pred EEEecCCc
Confidence 5 455543
No 64
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=49.01 E-value=34 Score=38.79 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=40.6
Q ss_pred HHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEEE
Q 004263 590 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVIT 669 (765)
Q Consensus 590 ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~is 669 (765)
.++.+.+.|+++||+.|+.+.. .++.+.+...- .++... +..+.+|- -++...++++|+++
T Consensus 30 ~ve~al~~Gv~~vQlR~K~~~~---------~~~~~~a~~l~-~l~~~~--~v~liIND-------~~dlA~~~gAdGVH 90 (540)
T 3nl6_A 30 QVEAGLQNGVTLVQIREKDADT---------KFFIEEALQIK-ELCHAH--NVPLIIND-------RIDVAMAIGADGIH 90 (540)
T ss_dssp HHHHHHHTTCSEEEECCSSSCT---------THHHHHHHHHH-HHHHHT--TCCEEECS-------CSHHHHHTTCSEEE
T ss_pred HHHHHHHCCCCEEEEecCCCCH---------HHHHHHHHHHH-HHHHhc--CCEEEEeC-------cHHHHHHcCCCEEE
Confidence 3445567899999999987643 24444444433 333332 35567762 25566788999999
Q ss_pred Eec
Q 004263 670 IEN 672 (765)
Q Consensus 670 iE~ 672 (765)
+..
T Consensus 91 Lgq 93 (540)
T 3nl6_A 91 VGQ 93 (540)
T ss_dssp ECT
T ss_pred ECh
Confidence 973
No 65
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=49.00 E-value=50 Score=33.17 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCCeEEeec------cccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccE
Q 004263 190 EVVAELKAAGATWIQFDE------PTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTG 263 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDE------P~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~ 263 (765)
++++.+.++|++|+|+|. |.+.... ..++ .+.+..+. ++|+-.. +. ...++.+.+.. +|+
T Consensus 30 ~~i~~~~~~gad~lhvDvmDG~fvpn~t~G~--~~v~-------~lr~~~~~-DvhLMv~--~p-~~~i~~~~~aG-Ad~ 95 (237)
T 3cu2_A 30 EEVTTLLENQINVLHFDIADGQFSSLFTVGA--IGIK-------YFPTHCFK-DVHLMVR--NQ-LEVAKAVVANG-ANL 95 (237)
T ss_dssp HHHHHHHHTTCCEEEEEEEBSSSSSCBCBCT--HHHH-------TSCTTSEE-EEEEECS--CH-HHHHHHHHHTT-CSE
T ss_pred HHHHHHHHcCCCEEEEEEecCccccchhhhH--HHHH-------HHhhhCCC-CeEEEEE--CH-HHHHHHHHHcC-CCE
Confidence 456777889999999996 6554432 1222 22221111 4555433 22 45578888998 999
Q ss_pred --EEEEe
Q 004263 264 --FGFDL 268 (765)
Q Consensus 264 --l~lD~ 268 (765)
+|.+-
T Consensus 96 itvH~ea 102 (237)
T 3cu2_A 96 VTLQLEQ 102 (237)
T ss_dssp EEEETTC
T ss_pred EEEecCC
Confidence 66554
No 66
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=48.95 E-value=2.5e+02 Score=29.22 Aligned_cols=149 Identities=6% Similarity=0.003 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCCh---hHHHHHHHc
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNF---NDIIHSIMD 662 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~---~~i~~~l~~ 662 (765)
...+..+.+.+.|+++|-|---+-+-+ ....+.++.++ +++.+... + +..|.+--| ||- .++++.-++
T Consensus 75 ~~~~~A~~~v~~GAdiIDIg~~StrP~--~~~vs~eee~~-vV~~v~~~---~--~vplsI~DT-~~~~~~~~V~eaal~ 145 (310)
T 2h9a_B 75 DPVAWAKKCVEYGADIVALRLVSAHPD--GQNRSGAELAE-VCKAVADA---I--DVPLMIIGC-GVEEKDAEIFPVIGE 145 (310)
T ss_dssp CHHHHHHHHHHTTCSEEEEECGGGCTT--TTCCCHHHHHH-HHHHHHHH---C--SSCEEEECC-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEeCccCCCC--CCCCCHHHHHH-HHHHHHHh---C--CceEEEECC-CCCCCCHHHHHHHHH
Confidence 344455566689999988775433222 11234554443 55555543 2 244555222 221 256777777
Q ss_pred CCcc--EEEEecCCCCh-hhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhh-cCCCcEEEcCCCCCCCC
Q 004263 663 MDAD--VITIENSRSDE-KLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAV-LESNILWVNPDCGLKTR 738 (765)
Q Consensus 663 l~~D--~isiE~~r~~~-~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~-i~~~~l~vsPdCGL~~~ 738 (765)
..++ .|--+.+-.+. +.+....+ |+-.+++ -|.. +.+.+.++++.+.+. ++.+++++.|.+|+...
T Consensus 146 aga~~k~iINdvs~~~~~~~~~~aa~---~g~~vv~----m~~~---dv~~l~~~~~~a~~~Gi~~e~IilDPg~g~~g~ 215 (310)
T 2h9a_B 146 ALSGRNCLLSSATKDNYKPIVATCMV---HGHSVVA----SAPL---DINLSKQLNIMIMEMNLAPNRIIMDPLIGALGY 215 (310)
T ss_dssp HTTTSCCEEEEECTTTHHHHHHHHHH---HTCEEEE----ECSS---CHHHHHHHHHHHHTTTCCGGGEEEECCCCCTTT
T ss_pred hCCCCCCEEEECCCCccHHHHHHHHH---hCCCEEE----EChh---HHHHHHHHHHHHHHCCCChhhEEEeCCCccccC
Confidence 7776 23223211233 33333343 2333322 2221 467777777777653 34589999999995444
Q ss_pred ChhhHHHHHHHHHHH
Q 004263 739 KYSEVKPALSNMVAA 753 (765)
Q Consensus 739 ~~~~~~~kL~~mv~a 753 (765)
+.+.+...++.+..+
T Consensus 216 ~~e~~~~~l~~ir~~ 230 (310)
T 2h9a_B 216 GIEYSYSIIERMRLG 230 (310)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred chHhHHHHHHHHHHh
Confidence 555554555555543
No 67
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=48.20 E-value=2e+02 Score=27.79 Aligned_cols=105 Identities=12% Similarity=0.095 Sum_probs=55.8
Q ss_pred HHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEEEE
Q 004263 591 VEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITI 670 (765)
Q Consensus 591 v~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~isi 670 (765)
+..+.+.|+++||++++.+ +..++.+. ...++.. +.+.. .+.++ +-++...++++|++++
T Consensus 35 ~~~~~~~G~~~v~lr~~~~---------~~~~~~~~-~~~l~~~--~~~~~-~l~v~-------~~~~~a~~~gad~v~l 94 (221)
T 1yad_A 35 IIITIQNEVDFIHIRERSK---------SAADILKL-LDLIFEG--GIDKR-KLVMN-------GRVDIALFSTIHRVQL 94 (221)
T ss_dssp HHHHHGGGCSEEEECCTTS---------CHHHHHHH-HHHHHHT--TCCGG-GEEEE-------SCHHHHHTTTCCEEEE
T ss_pred HHHHHHCCCCEEEEccCCC---------CHHHHHHH-HHHHHHh--cCcCC-eEEEe-------ChHHHHHHcCCCEEEe
Confidence 4556688999999997653 23333333 2233322 12212 44454 2367788999999999
Q ss_pred ecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCC
Q 004263 671 ENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPD 732 (765)
Q Consensus 671 E~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPd 732 (765)
.......+.++.+.. +..++ + +.+ +++++. ++. ..+.+-+.++|-
T Consensus 95 ~~~~~~~~~~~~~~~----~~~ig--~-sv~-----t~~~~~----~a~-~~gaD~i~~~~~ 139 (221)
T 1yad_A 95 PSGSFSPKQIRARFP----HLHIG--R-SVH-----SLEEAV----QAE-KEDADYVLFGHV 139 (221)
T ss_dssp CTTSCCHHHHHHHCT----TCEEE--E-EEC-----SHHHHH----HHH-HTTCSEEEEECC
T ss_pred CCCccCHHHHHHHCC----CCEEE--E-EcC-----CHHHHH----HHH-hCCCCEEEECCc
Confidence 743222333333221 33343 3 333 455542 232 246677888763
No 68
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=47.90 E-value=64 Score=32.11 Aligned_cols=18 Identities=33% Similarity=0.721 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCCeEEeec
Q 004263 190 EVVAELKAAGATWIQFDE 207 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDE 207 (765)
++++.+.++|++|+|+|-
T Consensus 22 ~~i~~~~~~g~d~iHvDv 39 (227)
T 1tqx_A 22 EETQRMESLGAEWIHLDV 39 (227)
T ss_dssp HHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEE
Confidence 566677889999999995
No 69
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=47.87 E-value=1.5e+02 Score=30.39 Aligned_cols=147 Identities=12% Similarity=0.081 Sum_probs=83.6
Q ss_pred HHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccE
Q 004263 588 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 667 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~ 667 (765)
.+.++.|.++|+++|.+==|.-...+|... + ..+.++.+.+ . +++++.+|+ .+. +-++...+++++.
T Consensus 29 ~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~-~-------~~e~~~~i~~-~-~~~~v~~l~--~n~-~~i~~a~~~G~~~ 95 (295)
T 1ydn_A 29 IALINRLSDCGYARIEATSFVSPKWVPQLA-D-------SREVMAGIRR-A-DGVRYSVLV--PNM-KGYEAAAAAHADE 95 (295)
T ss_dssp HHHHHHHTTTTCSEEEEEECSCTTTCGGGT-T-------HHHHHHHSCC-C-SSSEEEEEC--SSH-HHHHHHHHTTCSE
T ss_pred HHHHHHHHHcCcCEEEEccCcCcccccccc-C-------HHHHHHHHHh-C-CCCEEEEEe--CCH-HHHHHHHHCCCCE
Confidence 344566778999998875433222122111 1 1233444432 2 357787886 454 4577788899999
Q ss_pred EEEecCCC----------C-hhhHH-------HhhhcccCCceec--cccc-cCCCCCCCCHHHHHHHHHHHHhhcCCCc
Q 004263 668 ITIENSRS----------D-EKLLS-------VFREGVKYRAGIG--PGVY-DIHSPRIPSTEEIADRINKMLAVLESNI 726 (765)
Q Consensus 668 isiE~~r~----------~-~~~L~-------~~~~~~~~~~~l~--~GVv-d~~s~~ve~~eev~~~i~~a~~~i~~~~ 726 (765)
+.+..+.| . .+.++ ..++ .+..+. +|.+ +.-..-.-+++++.+.++.+.+ .|.+.
T Consensus 96 V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~---~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~-~G~d~ 171 (295)
T 1ydn_A 96 IAVFISASEGFSKANINCTIAESIERLSPVIGAAIN---DGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFS-LGCHE 171 (295)
T ss_dssp EEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHH---TTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHH-HTCSE
T ss_pred EEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHH---cCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHh-cCCCE
Confidence 99983222 1 12222 2233 233333 2221 1000124578999888888765 58899
Q ss_pred EEEcCCCCCCCCChhhHHHHHHHHHHH
Q 004263 727 LWVNPDCGLKTRKYSEVKPALSNMVAA 753 (765)
Q Consensus 727 l~vsPdCGL~~~~~~~~~~kL~~mv~a 753 (765)
+.+...-|.. +|.+...-++.+.+.
T Consensus 172 i~l~Dt~G~~--~P~~~~~lv~~l~~~ 196 (295)
T 1ydn_A 172 VSLGDTIGRG--TPDTVAAMLDAVLAI 196 (295)
T ss_dssp EEEEETTSCC--CHHHHHHHHHHHHTT
T ss_pred EEecCCCCCc--CHHHHHHHHHHHHHh
Confidence 9999877773 676776666666543
No 70
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=45.89 E-value=60 Score=32.12 Aligned_cols=67 Identities=6% Similarity=0.057 Sum_probs=39.0
Q ss_pred HHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEEEEe
Q 004263 592 EDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIE 671 (765)
Q Consensus 592 ~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE 671 (765)
+.+.++|+++|++++-.-... +. .. + ..+..++. .. +..+.+|---.+. +-++.+.++++|.+.+-
T Consensus 39 ~~~~~~Gad~i~v~~~d~~~~-~~--~~---~--~~i~~i~~---~~--~ipv~v~ggI~~~-~~~~~~l~~Gad~V~lg 104 (244)
T 1vzw_A 39 LAWQRSGAEWLHLVDLDAAFG-TG--DN---R--ALIAEVAQ---AM--DIKVELSGGIRDD-DTLAAALATGCTRVNLG 104 (244)
T ss_dssp HHHHHTTCSEEEEEEHHHHHT-SC--CC---H--HHHHHHHH---HC--SSEEEEESSCCSH-HHHHHHHHTTCSEEEEC
T ss_pred HHHHHcCCCEEEEecCchhhc-CC--Ch---H--HHHHHHHH---hc--CCcEEEECCcCCH-HHHHHHHHcCCCEEEEC
Confidence 556789999999987432211 10 11 1 12223332 22 3567777443443 34777888999999987
Q ss_pred c
Q 004263 672 N 672 (765)
Q Consensus 672 ~ 672 (765)
+
T Consensus 105 ~ 105 (244)
T 1vzw_A 105 T 105 (244)
T ss_dssp H
T ss_pred c
Confidence 3
No 71
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=45.74 E-value=2.2e+02 Score=32.20 Aligned_cols=213 Identities=14% Similarity=0.125 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeEEeccceeeecCCceeeCcEEEccCCCCcccchhHHHHHH
Q 004263 468 KEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQ 547 (765)
Q Consensus 468 ~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~~~g~~~~~~t~~~~~P~i~g~i~~~~p~~~~~~~~a~ 547 (765)
-+.|+++-+...++|-|+|+..-|.=+-... .+ .|+. .. + ..+...-.+.|+
T Consensus 43 Pe~V~~iH~~Yl~AGAdii~TnTf~a~~~~l--~~--~g~~-----------~~----------~---~el~~~av~lAr 94 (566)
T 1q7z_A 43 PDVVLKVHRSYIESGSDVILTNTFGATRMKL--RK--HGLE-----------DK----------L---DPIVRNAVRIAR 94 (566)
T ss_dssp HHHHHHHHHHHHHHTCSEEECSCTTCSHHHH--GG--GTCG-----------GG----------H---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcceeecCcccCCHHHH--Hh--cCch-----------HH----------H---HHHHHHHHHHHH
Confidence 4678888888999999999888765432211 11 0110 00 0 011122334444
Q ss_pred hccCCCceEeeechhHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHH
Q 004263 548 SMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWA 627 (765)
Q Consensus 548 ~~t~~~vK~~ltGPvTll~~s~~~~~~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~ 627 (765)
+..+...-+--.||..-.. -.....+ .+++...+++.+..|.+.|+++|-+. .+ + +. ...+.+
T Consensus 95 ~a~~~~~VAGsiGP~g~~~--~~~~~~~----~~e~~~~~~~qi~~l~~~gvD~l~~E--T~----~----~~-~Ea~aa 157 (566)
T 1q7z_A 95 RAAGEKLVFGDIGPTGELP--YPLGSTL----FEEFYENFRETVEIMVEEGVDGIIFE--TF----S----DI-LELKAA 157 (566)
T ss_dssp HHHTTSEEEEEECCCSCCB--TTTSSBC----HHHHHHHHHHHHHHHHHTTCSEEEEE--EE----C----CH-HHHHHH
T ss_pred HHHhCCeEEEeCCCcccCC--CCCCCCC----HHHHHHHHHHHHHHHHhCCCCEEEEe--cc----C----CH-HHHHHH
Confidence 4322113344567854321 0111123 35667889999999999999987664 11 1 11 234556
Q ss_pred HHHHHHHHccCCCCceEEEEeccC---------ChhHHHHHHHcCCccEEEEecCCCC--h-hhHHHhhhcccCCceecc
Q 004263 628 VHSFRITNCGVQDTTQVHTHMCYS---------NFNDIIHSIMDMDADVITIENSRSD--E-KLLSVFREGVKYRAGIGP 695 (765)
Q Consensus 628 v~a~~~~~~~v~~~~~I~~H~C~g---------~~~~i~~~l~~l~~D~isiE~~r~~--~-~~L~~~~~~~~~~~~l~~ 695 (765)
+.+.+....+ ..+++.+++. .+.+.+..+..++++++++--+... + ..|+.+.. ....-+
T Consensus 158 ~~a~~~~~~~----~Pv~vS~t~~~~g~~~~G~~~~~~~~~l~~~~~~avG~NC~~gp~~~~~~l~~l~~----~~~~p~ 229 (566)
T 1q7z_A 158 VLAAREVSRD----VFLIAHMTFDEKGRSLTGTDPANFAITFDELDIDALGINCSLGPEEILPIFQELSQ----YTDKFL 229 (566)
T ss_dssp HHHHHHHCSS----SCEEEEECCCTTSCCTTSCCHHHHHHHHHTSSCSEEEEESSSCHHHHHHHHHHHHH----TCCSEE
T ss_pred HHHHHHhCCC----CcEEEEEEEcCCCeeCCCCcHHHHHHHhhccCCCEEEEeCCCCHHHHHHHHHHHHh----cCCCEE
Confidence 6666654334 4466666652 2457788888899999999854322 2 33444443 112333
Q ss_pred cccc---------CCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCC
Q 004263 696 GVYD---------IHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLK 736 (765)
Q Consensus 696 GVvd---------~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~ 736 (765)
++++ ....|-.+++++.+.+.+..+. .--+|.=-||-.
T Consensus 230 ~vyPNaG~p~~~~~~~~~~~~p~~~a~~~~~~~~~---G~~iiGGCCGTt 276 (566)
T 1q7z_A 230 VVEPNAGKPIVENGKTVYPLKPHDFAVHIDSYYEL---GVNIFGGCCGTT 276 (566)
T ss_dssp EEECCSSSCEEETTEEECCCCHHHHHTTHHHHHHT---TCSEECCCTTCC
T ss_pred EEEcCCCCCcccCCccccCCCHHHHHHHHHHHHHc---CCcEEccccCCC
Confidence 4443 3333556899998888887663 345688888844
No 72
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=44.88 E-value=2.2e+02 Score=27.41 Aligned_cols=104 Identities=12% Similarity=0.087 Sum_probs=57.2
Q ss_pred HHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccC
Q 004263 192 VAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRG 271 (765)
Q Consensus 192 l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~ 271 (765)
+..+.+.|++|||++++- .+.++...+.+....+. .+...+++.. .++.+.+.. +|++|+....
T Consensus 35 ~~~~~~~G~~~v~lr~~~----~~~~~~~~~~~~l~~~~--~~~~~l~v~~--------~~~~a~~~g-ad~v~l~~~~- 98 (221)
T 1yad_A 35 IIITIQNEVDFIHIRERS----KSAADILKLLDLIFEGG--IDKRKLVMNG--------RVDIALFST-IHRVQLPSGS- 98 (221)
T ss_dssp HHHHHGGGCSEEEECCTT----SCHHHHHHHHHHHHHTT--CCGGGEEEES--------CHHHHHTTT-CCEEEECTTS-
T ss_pred HHHHHHCCCCEEEEccCC----CCHHHHHHHHHHHHHhc--CcCCeEEEeC--------hHHHHHHcC-CCEEEeCCCc-
Confidence 445668899999999873 44333333333322221 1112566651 246677889 9999996432
Q ss_pred CCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 004263 272 TKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 272 ~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vsp 326 (765)
...+.++..++ +..+++.+ + +++++ +++.+ .|.+-|.++|
T Consensus 99 -~~~~~~~~~~~-~~~ig~sv---~-----t~~~~----~~a~~-~gaD~i~~~~ 138 (221)
T 1yad_A 99 -FSPKQIRARFP-HLHIGRSV---H-----SLEEA----VQAEK-EDADYVLFGH 138 (221)
T ss_dssp -CCHHHHHHHCT-TCEEEEEE---C-----SHHHH----HHHHH-TTCSEEEEEC
T ss_pred -cCHHHHHHHCC-CCEEEEEc---C-----CHHHH----HHHHh-CCCCEEEECC
Confidence 23444554344 55555433 2 44543 33322 4667788876
No 73
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=44.80 E-value=92 Score=30.08 Aligned_cols=96 Identities=17% Similarity=0.185 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccE
Q 004263 588 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 667 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~ 667 (765)
.+.++.+.+.|+++||+|.-.-.. .+.....++ .+..++. .. +..+.+|..--+..+.++.+.++++|.
T Consensus 19 ~~~~~~~~~~G~~~i~~~~~dg~~-~~~~~~g~~-----~i~~i~~---~~--~~~~~v~l~v~d~~~~i~~~~~~gad~ 87 (220)
T 2fli_A 19 ASELARIEETDAEYVHIDIMDGQF-VPNISFGAD-----VVASMRK---HS--KLVFDCHLMVVDPERYVEAFAQAGADI 87 (220)
T ss_dssp HHHHHHHHHTTCCEEEEEEEBSSS-SSCBCBCHH-----HHHHHHT---TC--CSEEEEEEESSSGGGGHHHHHHHTCSE
T ss_pred HHHHHHHHHcCCCEEEEEeecCCC-CCccccCHH-----HHHHHHH---hC--CCCEEEEEeecCHHHHHHHHHHcCCCE
Confidence 345666778999999999522110 000011121 2223332 22 245677776445444468888999999
Q ss_pred EEEecCC-CCh-hhHHHhhhcccCCceecccc
Q 004263 668 ITIENSR-SDE-KLLSVFREGVKYRAGIGPGV 697 (765)
Q Consensus 668 isiE~~r-~~~-~~L~~~~~~~~~~~~l~~GV 697 (765)
+.+-... ... +.++.+.+ ++..+++.+
T Consensus 88 v~vh~~~~~~~~~~~~~~~~---~g~~i~~~~ 116 (220)
T 2fli_A 88 MTIHTESTRHIHGALQKIKA---AGMKAGVVI 116 (220)
T ss_dssp EEEEGGGCSCHHHHHHHHHH---TTSEEEEEE
T ss_pred EEEccCccccHHHHHHHHHH---cCCcEEEEE
Confidence 9775211 222 33444544 244565555
No 74
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=44.10 E-value=1.3e+02 Score=29.91 Aligned_cols=138 Identities=11% Similarity=0.074 Sum_probs=70.0
Q ss_pred HHHHHHHHHcCCCeEEeec------cccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCcc
Q 004263 189 KEVVAELKAAGATWIQFDE------PTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVT 262 (765)
Q Consensus 189 ~~~l~~L~~~G~~~VQiDE------P~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd 262 (765)
.++++.+ ++|++|+++|- |.+... ...++.+++. . .. ...+|+-++ +. +..++.+.+.. +|
T Consensus 16 ~~~i~~~-~~gad~lHvDvmDG~fvpn~t~G--~~~v~~lr~~----~-~~-~~dvhLmv~--dp-~~~i~~~~~aG-Ad 82 (231)
T 3ctl_A 16 KEQIEFI-DSHADYFHIDIMDGHFVPNLTLS--PFFVSQVKKL----A-TK-PLDCHLMVT--RP-QDYIAQLARAG-AD 82 (231)
T ss_dssp HHHHHHH-HTTCSCEEEEEECSSSSSCCCBC--HHHHHHHHTT----C-CS-CEEEEEESS--CG-GGTHHHHHHHT-CS
T ss_pred HHHHHHH-HcCCCEEEEEEEeCccCccchhc--HHHHHHHHhc----c-CC-cEEEEEEec--CH-HHHHHHHHHcC-CC
Confidence 3567778 89999999994 433321 2223332221 1 11 135666554 33 44568888888 88
Q ss_pred EEEEEecc-CCCChhhHhhhC-CCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEE-EeCCCCCccccccccc
Q 004263 263 GFGFDLIR-GTKTLDLIKTEF-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVV-VSTSCSLLHTAVDLEN 339 (765)
Q Consensus 263 ~l~lD~~~-~~~~l~~l~~~~-p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~-vspsC~L~h~P~~~~~ 339 (765)
++.+=+.. .. .+..+.+.. ..++..++-+ +..++ .+ +++..++. .+.|. .+-+.||.--.+
T Consensus 83 ~itvh~Ea~~~-~~~~~i~~i~~~G~k~gv~l-np~tp-~~-------~~~~~l~~--~D~VlvmsV~pGfggQ~f---- 146 (231)
T 3ctl_A 83 FITLHPETING-QAFRLIDEIRRHDMKVGLIL-NPETP-VE-------AMKYYIHK--ADKITVMTVDPGFAGQPF---- 146 (231)
T ss_dssp EEEECGGGCTT-THHHHHHHHHHTTCEEEEEE-CTTCC-GG-------GGTTTGGG--CSEEEEESSCTTCSSCCC----
T ss_pred EEEECcccCCc-cHHHHHHHHHHcCCeEEEEE-ECCCc-HH-------HHHHHHhc--CCEEEEeeeccCcCCccc----
Confidence 88655444 32 333333211 1345555544 33221 22 23333333 35554 244444442221
Q ss_pred ccCCcHHHHhHHHHHHHHHHHHHHHHH
Q 004263 340 ETKLDQEIKSWLAFAAQKVVEVNALAK 366 (765)
Q Consensus 340 E~~l~~~~~~~lafA~qKl~el~~l~~ 366 (765)
.....+|+++++.+..
T Consensus 147 -----------~~~~l~kI~~lr~~~~ 162 (231)
T 3ctl_A 147 -----------IPEMLDKLAELKAWRE 162 (231)
T ss_dssp -----------CTTHHHHHHHHHHHHH
T ss_pred -----------cHHHHHHHHHHHHHHh
Confidence 1137788888888764
No 75
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=43.51 E-value=1.7e+02 Score=28.10 Aligned_cols=107 Identities=17% Similarity=0.199 Sum_probs=55.9
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHH---HHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEE
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKL---QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF 266 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~---~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~l 266 (765)
+.++.+.++|+++||++++.... ... ..+.+.+..+.... .+.+++.. .++...++. +|++|+
T Consensus 35 ~~~~~~~~~G~~~i~l~~~~~~~----~~~~~~~~~~~~l~~~~~~~-~v~v~v~~--------~~~~a~~~g-ad~v~l 100 (227)
T 2tps_A 35 TVVQKALKGGATLYQFREKGGDA----LTGEARIKFAEKAQAACREA-GVPFIVND--------DVELALNLK-ADGIHI 100 (227)
T ss_dssp HHHHHHHHHTCSEEEECCCSTTC----CCHHHHHHHHHHHHHHHHHH-TCCEEEES--------CHHHHHHHT-CSEEEE
T ss_pred HHHHHHHHCCCCEEEEecCCCCH----hHHHHHHHHHHHHHHHHHHc-CCeEEEcC--------HHHHHHHcC-CCEEEE
Confidence 45666778899999999875432 122 22223333332221 24566642 135566778 999999
Q ss_pred EeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 004263 267 DLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 267 D~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vsp 326 (765)
.-.. ..+..+++.++. +.+|+ +. .+++++ ..+.+ .|.+-+.++|
T Consensus 101 ~~~~--~~~~~~~~~~g~---~~~~~-s~-----~t~~e~----~~a~~-~g~d~v~~~~ 144 (227)
T 2tps_A 101 GQED--ANAKEVRAAIGD---MILGV-SA-----HTMSEV----KQAEE-DGADYVGLGP 144 (227)
T ss_dssp CTTS--SCHHHHHHHHTT---SEEEE-EE-----CSHHHH----HHHHH-HTCSEEEECC
T ss_pred CCCc--cCHHHHHHhcCC---cEEEE-ec-----CCHHHH----HHHHh-CCCCEEEECC
Confidence 4222 234444433432 33444 11 355553 22322 4667788754
No 76
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=43.47 E-value=49 Score=32.80 Aligned_cols=124 Identities=15% Similarity=0.160 Sum_probs=60.1
Q ss_pred HHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEecc--
Q 004263 193 AELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR-- 270 (765)
Q Consensus 193 ~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~-- 270 (765)
+.+.++|+++||+++---........ +. ...+.+.. ...+.++.-.-+. . -++.+.+.. +|++++-...
T Consensus 39 ~~~~~~Gad~i~v~~~d~~~~~~~~~-~~----i~~i~~~~-~ipv~v~ggI~~~-~-~~~~~l~~G-ad~V~lg~~~l~ 109 (244)
T 1vzw_A 39 LAWQRSGAEWLHLVDLDAAFGTGDNR-AL----IAEVAQAM-DIKVELSGGIRDD-D-TLAAALATG-CTRVNLGTAALE 109 (244)
T ss_dssp HHHHHTTCSEEEEEEHHHHHTSCCCH-HH----HHHHHHHC-SSEEEEESSCCSH-H-HHHHHHHTT-CSEEEECHHHHH
T ss_pred HHHHHcCCCEEEEecCchhhcCCChH-HH----HHHHHHhc-CCcEEEECCcCCH-H-HHHHHHHcC-CCEEEECchHhh
Confidence 55678999999998721111101111 22 22233322 2457776333333 3 366777888 9999987543
Q ss_pred CCCChhhHhhhCCCCCEEEEEEee---CCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 004263 271 GTKTLDLIKTEFPLGKYLFAGVVD---GRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 271 ~~~~l~~l~~~~p~~k~l~lGvVd---grn~~~ed~~~~~~~l~~~~~~~~~~~l~vsp 326 (765)
++..+..+.+.++....+++-+-+ -..-|.++-....+.++++.+ .|.+.+.+.+
T Consensus 110 ~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~-~G~~~i~~~~ 167 (244)
T 1vzw_A 110 TPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNK-EGCARYVVTD 167 (244)
T ss_dssp CHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHH-TTCCCEEEEE
T ss_pred CHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHHHHHHHh-CCCCEEEEec
Confidence 222233333334421123333211 134555422233334444443 5667787754
No 77
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=43.35 E-value=2.7e+02 Score=28.58 Aligned_cols=146 Identities=10% Similarity=0.079 Sum_probs=80.4
Q ss_pred HHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccE
Q 004263 588 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 667 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~ 667 (765)
.+.++.|.++|+++|.+==|.-....|.-. +.. +.++.+.+ . +++.+.+|++ +.. -++...+++++.
T Consensus 33 ~~i~~~L~~~Gv~~IE~g~~~~~~~~~~~~-d~~-------~~~~~~~~-~-~~~~~~~l~~--~~~-~i~~a~~aG~~~ 99 (302)
T 2ftp_A 33 IRLVDDLSAAGLDYIEVGSFVSPKWVPQMA-GSA-------EVFAGIRQ-R-PGVTYAALAP--NLK-GFEAALESGVKE 99 (302)
T ss_dssp HHHHHHHHHTTCSEEEEEECSCTTTCGGGT-THH-------HHHHHSCC-C-TTSEEEEECC--SHH-HHHHHHHTTCCE
T ss_pred HHHHHHHHHcCcCEEEECCCcCcccccccc-CHH-------HHHHHhhh-c-CCCEEEEEeC--CHH-HHHHHHhCCcCE
Confidence 345566788999988774221111111111 111 22333322 2 3577888873 554 466777889999
Q ss_pred EEEecCCCC-----------hhhH-------HHhhhcccCCceec--cccc-cCCCCCCCCHHHHHHHHHHHHhhcCCCc
Q 004263 668 ITIENSRSD-----------EKLL-------SVFREGVKYRAGIG--PGVY-DIHSPRIPSTEEIADRINKMLAVLESNI 726 (765)
Q Consensus 668 isiE~~r~~-----------~~~L-------~~~~~~~~~~~~l~--~GVv-d~~s~~ve~~eev~~~i~~a~~~i~~~~ 726 (765)
+.+-.+.++ .+.+ +..++ .+..+- +|.+ +.-..-.-+++.+.+.++.+.+ .+.+.
T Consensus 100 v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~---~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~-~G~d~ 175 (302)
T 2ftp_A 100 VAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQ---HQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQ-MGCYE 175 (302)
T ss_dssp EEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHH---TTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHH-TTCSE
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHH-cCCCE
Confidence 998322221 1122 22233 234442 2211 1111125688999998888765 58899
Q ss_pred EEEcCCCCCCCCChhhHHHHHHHHHH
Q 004263 727 LWVNPDCGLKTRKYSEVKPALSNMVA 752 (765)
Q Consensus 727 l~vsPdCGL~~~~~~~~~~kL~~mv~ 752 (765)
+.+...-|.. +|.+...-++.+.+
T Consensus 176 i~l~DT~G~~--~P~~~~~lv~~l~~ 199 (302)
T 2ftp_A 176 VSLGDTIGVG--TAGATRRLIEAVAS 199 (302)
T ss_dssp EEEEESSSCC--CHHHHHHHHHHHTT
T ss_pred EEEeCCCCCc--CHHHHHHHHHHHHH
Confidence 9999777874 57676666666544
No 78
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=43.22 E-value=1.5e+02 Score=28.38 Aligned_cols=86 Identities=14% Similarity=0.190 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccE
Q 004263 588 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 667 (765)
Q Consensus 588 ~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~ 667 (765)
.+.++.+.+.|+++||++++.. +. .+.++.+.+..+....|..-.++. ++.++...++++|+
T Consensus 22 ~~~~~~~~~~G~~~i~l~~~~~---------~~-------~~~i~~i~~~~~~~l~vg~g~~~~--~~~i~~a~~~Gad~ 83 (212)
T 2v82_A 22 LAHVGAVIDAGFDAVEIPLNSP---------QW-------EQSIPAIVDAYGDKALIGAGTVLK--PEQVDALARMGCQL 83 (212)
T ss_dssp HHHHHHHHHHTCCEEEEETTST---------TH-------HHHHHHHHHHHTTTSEEEEECCCS--HHHHHHHHHTTCCE
T ss_pred HHHHHHHHHCCCCEEEEeCCCh---------hH-------HHHHHHHHHhCCCCeEEEeccccC--HHHHHHHHHcCCCE
Confidence 3455667788999999998741 11 112222222222123332222322 24578888999999
Q ss_pred EEEecCCCChhhHHHhhhcccCCceeccc
Q 004263 668 ITIENSRSDEKLLSVFREGVKYRAGIGPG 696 (765)
Q Consensus 668 isiE~~r~~~~~L~~~~~~~~~~~~l~~G 696 (765)
+++.. .+.+.++..+. ++..+.+|
T Consensus 84 V~~~~--~~~~~~~~~~~---~g~~~~~g 107 (212)
T 2v82_A 84 IVTPN--IHSEVIRRAVG---YGMTVCPG 107 (212)
T ss_dssp EECSS--CCHHHHHHHHH---TTCEEECE
T ss_pred EEeCC--CCHHHHHHHHH---cCCCEEee
Confidence 98653 23444444443 24444555
No 79
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=42.70 E-value=2.3e+02 Score=26.91 Aligned_cols=107 Identities=16% Similarity=0.179 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
+.++.+.++|+++||+++|... ........+....+.... ...+++. . -++.+.+.. +|++++...
T Consensus 30 ~~~~~~~~~G~~~i~l~~~~~~----~~~~~~~~~~l~~~~~~~-~v~v~v~---~-----~~~~a~~~g-ad~v~l~~~ 95 (215)
T 1xi3_A 30 ESVREALEGGATAIQMRIKNAP----TREMYEIGKTLRQLTREY-DALFFVD---D-----RVDVALAVD-ADGVQLGPE 95 (215)
T ss_dssp HHHHHHHHTTCSEEEECCCSCC----HHHHHHHHHHHHHHHHHT-TCEEEEE---S-----CHHHHHHHT-CSEEEECTT
T ss_pred HHHHHHHHCCCCEEEECCCCCC----HHHHHHHHHHHHHHHHHc-CCeEEEc---C-----hHHHHHHcC-CCEEEECCc
Confidence 4566777899999999987443 222222222222332221 2456664 1 135566778 999998632
Q ss_pred cCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 004263 270 RGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 270 ~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vsp 326 (765)
. ...+.+.... .+..+++.+ .+++++. ++.+ .|.+-+.++|
T Consensus 96 ~--~~~~~~~~~~-~~~~~~v~~--------~t~~e~~----~~~~-~g~d~i~~~~ 136 (215)
T 1xi3_A 96 D--MPIEVAKEIA-PNLIIGASV--------YSLEEAL----EAEK-KGADYLGAGS 136 (215)
T ss_dssp S--CCHHHHHHHC-TTSEEEEEE--------SSHHHHH----HHHH-HTCSEEEEEC
T ss_pred c--CCHHHHHHhC-CCCEEEEec--------CCHHHHH----HHHh-cCCCEEEEcC
Confidence 2 1234444322 344444333 4555542 2222 4667788765
No 80
>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A*
Probab=42.68 E-value=66 Score=34.38 Aligned_cols=110 Identities=14% Similarity=0.041 Sum_probs=61.5
Q ss_pred CChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCcc----EE-EEEeccCCCChhhHhhhCCCCCEE
Q 004263 214 LDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVT----GF-GFDLIRGTKTLDLIKTEFPLGKYL 288 (765)
Q Consensus 214 ~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd----~l-~lD~~~~~~~l~~l~~~~p~~k~l 288 (765)
+++.+.+.|+.+... +... ...|++||-.+.-..+.+..|.+.. ++ .+ |+++.. +.+..++.+..+-.|
T Consensus 187 ~t~~E~k~frA~a~a-a~et-G~Pv~iHt~~~~~~~e~l~iL~eeG-~~~~~vvi~H~~~~~---d~~~~~~~l~~G~yl 260 (360)
T 3tn4_A 187 ITEYEKMFFRAAARA-QKET-GAVIITHTQEGTMGPEQAAYLLEHG-ADPKKIVIGHMCDNT---DPDYHRKTLAYGVYI 260 (360)
T ss_dssp CCHHHHHHHHHHHHH-HHHH-CCEEEEECSTTCCHHHHHHHHHHTT-CCGGGEEECCGGGCC---CHHHHHHHHTTTCEE
T ss_pred CCHHHHHHHHHHHHH-HHHh-CCcEEEEcCcccCCHHHHHHHHHcC-CCCCceEEEcCCCCC---CHHHHHHHHHcCCEE
Confidence 455566666655432 2222 3578888876543124566777655 54 23 445443 444433323345567
Q ss_pred EEEEe--eCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCC
Q 004263 289 FAGVV--DGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSL 330 (765)
Q Consensus 289 ~lGvV--dgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L 330 (765)
++.-+ ++.... .+-++-++.|.++.+..+.+||.|++||+-
T Consensus 261 ~fD~iG~~~~~~~-p~d~~r~~~l~~lv~~g~~drILLstDa~~ 303 (360)
T 3tn4_A 261 AFDRFGIQGMVGA-PTDEERVRTLLALLRDGYEKQIMLSHDTVN 303 (360)
T ss_dssp EECCTTCCCSTTC-CCHHHHHHHHHHHHHTTCGGGEEECCCCEE
T ss_pred EEcccccccccCC-CChHHHHHHHHHHHHhcCcceEEEecCCCc
Confidence 76322 222111 223556677888888788899999999943
No 81
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=42.55 E-value=32 Score=34.03 Aligned_cols=125 Identities=17% Similarity=0.187 Sum_probs=61.1
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEecc
Q 004263 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR 270 (765)
Q Consensus 191 ~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~ 270 (765)
+.+.+.++|+++||+++---........ +.++ .+.+.. ...+.++.-..+. +-++.+.+.. +|++++....
T Consensus 36 ~a~~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~----~i~~~~-~ipv~v~ggi~~~--~~~~~~l~~G-ad~V~lg~~~ 106 (244)
T 2y88_A 36 AALGWQRDGAEWIHLVDLDAAFGRGSNH-ELLA----EVVGKL-DVQVELSGGIRDD--ESLAAALATG-CARVNVGTAA 106 (244)
T ss_dssp HHHHHHHTTCSEEEEEEHHHHTTSCCCH-HHHH----HHHHHC-SSEEEEESSCCSH--HHHHHHHHTT-CSEEEECHHH
T ss_pred HHHHHHHcCCCEEEEEcCcccccCCChH-HHHH----HHHHhc-CCcEEEECCCCCH--HHHHHHHHcC-CCEEEECchH
Confidence 3346678899999998621111111111 2222 232222 2457776333333 3466777888 9999988653
Q ss_pred --CCCChhhHhhhCCCCCEEEEEEe--------eCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 004263 271 --GTKTLDLIKTEFPLGKYLFAGVV--------DGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 271 --~~~~l~~l~~~~p~~k~l~lGvV--------dgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vsp 326 (765)
.+..+..+.+.++....+++-+- -.| .|.++.....+.++.+.+ .|.+.+.+.+
T Consensus 107 l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~-g~~~~~~~~~e~~~~~~~-~G~~~i~~~~ 170 (244)
T 2y88_A 107 LENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGR-GWETDGGDLWDVLERLDS-EGCSRFVVTD 170 (244)
T ss_dssp HHCHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEG-GGTEEEEEHHHHHHHHHH-TTCCCEEEEE
T ss_pred hhChHHHHHHHHHcCCCEEEEEeccccCCCCEEEEC-CccCCCCCHHHHHHHHHh-CCCCEEEEEe
Confidence 22233333333442222333221 122 444422233444555544 4667888765
No 82
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=40.61 E-value=1.7e+02 Score=31.07 Aligned_cols=96 Identities=9% Similarity=0.082 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccc-------cccCCCCCC----CCHHHHHHHHHHHHHHHHccCCCCce
Q 004263 575 PRFETCYQIALAIKDEVEDLEKAGITVIQIDEAA-------LREGLPLRK----SEQDFYLKWAVHSFRITNCGVQDTTQ 643 (765)
Q Consensus 575 ~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPa-------L~~~l~l~~----~~~~~~l~~~v~a~~~~~~~v~~~~~ 643 (765)
+.+| +.++...+.+-.+...++|++.|+|+--- |+.....|. -+.+.-.+...+.++.+.+.++++..
T Consensus 149 t~~e-I~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~p 227 (363)
T 3l5l_A 149 TLDD-IARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLP 227 (363)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSC
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCce
Confidence 3344 45666777777777888999999999632 222111221 12333345666777777777766655
Q ss_pred EEEEeccC-----------ChhHHHHHHHcCCccEEEEe
Q 004263 644 VHTHMCYS-----------NFNDIIHSIMDMDADVITIE 671 (765)
Q Consensus 644 I~~H~C~g-----------~~~~i~~~l~~l~~D~isiE 671 (765)
|.+-+.-. ++..+...|.++++|.|++-
T Consensus 228 V~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs 266 (363)
T 3l5l_A 228 LTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVS 266 (363)
T ss_dssp EEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 66655422 22356677888999999886
No 83
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=38.89 E-value=72 Score=33.05 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=41.8
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD 267 (765)
+++++..++|+++||+|-. +.++ ++++...+.. ++.+..+ |++..+++..+.+.. ||.|++=
T Consensus 209 ~ea~eAl~aGaD~I~LDn~------~~~~---l~~av~~~~~---~v~ieaS---GGIt~~~i~~~a~tG-VD~IsvG 270 (287)
T 3tqv_A 209 DELNQAIAAKADIVMLDNF------SGED---IDIAVSIARG---KVALEVS---GNIDRNSIVAIAKTG-VDFISVG 270 (287)
T ss_dssp HHHHHHHHTTCSEEEEESC------CHHH---HHHHHHHHTT---TCEEEEE---SSCCTTTHHHHHTTT-CSEEECS
T ss_pred HHHHHHHHcCCCEEEEcCC------CHHH---HHHHHHhhcC---CceEEEE---CCCCHHHHHHHHHcC-CCEEEEC
Confidence 4555666789999999974 2233 3444443432 3556666 777667899999999 9998874
No 84
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=38.70 E-value=2.2e+02 Score=29.93 Aligned_cols=92 Identities=12% Similarity=0.149 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEecccc-------cccCCCCCC----CCHHHHHHHHHHHHHHHHccCCCCceEEEEe
Q 004263 580 CYQIALAIKDEVEDLEKAGITVIQIDEAA-------LREGLPLRK----SEQDFYLKWAVHSFRITNCGVQDTTQVHTHM 648 (765)
Q Consensus 580 ~~~la~al~~ev~~L~~aG~~~IQiDEPa-------L~~~l~l~~----~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~ 648 (765)
+.++...+.+-.+...++|++.|+|+--. |+.....|. -+...-.+.+.+.++.+-+.++++..|.+-+
T Consensus 147 I~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRl 226 (349)
T 3hgj_A 147 MERILQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRV 226 (349)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 55666777777777888999999999643 111111221 1223334445555555555566555566655
Q ss_pred ccC----------ChhHHHHHHHcCCccEEEEe
Q 004263 649 CYS----------NFNDIIHSIMDMDADVITIE 671 (765)
Q Consensus 649 C~g----------~~~~i~~~l~~l~~D~isiE 671 (765)
.-. ++..+...|.+.++|.|++-
T Consensus 227 s~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs 259 (349)
T 3hgj_A 227 SATDWGEGGWSLEDTLAFARRLKELGVDLLDCS 259 (349)
T ss_dssp ESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccccccCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 421 22356677788999999886
No 85
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A*
Probab=38.07 E-value=1.5e+02 Score=31.70 Aligned_cols=105 Identities=14% Similarity=0.065 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHccCCCCceEEEEeccC-ChhHHHHHHHcCCc--cEEEEe-cCC-CChhhHHHhh-hcccCCceecccc
Q 004263 624 LKWAVHSFRITNCGVQDTTQVHTHMCYS-NFNDIIHSIMDMDA--DVITIE-NSR-SDEKLLSVFR-EGVKYRAGIGPGV 697 (765)
Q Consensus 624 l~~~v~a~~~~~~~v~~~~~I~~H~C~g-~~~~i~~~l~~l~~--D~isiE-~~r-~~~~~L~~~~-~~~~~~~~l~~GV 697 (765)
.+.+....+.+.+ . +..|++|+-.| +-.++++.|.+.++ ..+.+- ..+ .+.+....+- + .|-.|+++-
T Consensus 168 ~~~f~aq~~~A~e-~--glPViiH~r~gr~a~d~l~iL~e~g~~~~~vvi~H~~~~~~~~~a~~~l~~---~G~yI~f~g 241 (363)
T 3ovg_A 168 LKALEVAARTSIL-T--GCPILVHTQLGTMALEVAKHLIGFGANPDKIQISHLNKNPDKYYYEKVIKE---TGVTLCFDG 241 (363)
T ss_dssp HHHHHHHHHHHHH-H--CCCEEEEEETTCSHHHHHHHHHHHTCCGGGEEEECGGGSCCHHHHHHHHHH---HCCEEEECC
T ss_pred HHHHHHHHHHHHH-h--CCEEEEeCCCCCCHHHHHHHHHhcCCCCCcEEEEcCCCCCCHHHHHHHHHH---CCcEEEECC
Confidence 3444444444433 1 34589997543 22267777766444 344443 222 2443333333 3 134455543
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCC
Q 004263 698 YDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLK 736 (765)
Q Consensus 698 vd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~ 736 (765)
+-. .... +-+.-.+.++++++..+.+++.+++||+.+
T Consensus 242 ~~~-~~~~-~~~~ra~~l~~lv~~~p~drILleTDap~~ 278 (363)
T 3ovg_A 242 PDR-VKYY-PDSLLAENIKYLVDKGLQKHITLSLDAGRI 278 (363)
T ss_dssp TTC-TTTC-CHHHHHHHHHHHHHTTCGGGEEECCCCCSG
T ss_pred eec-cccC-ChhHHHHHHHHHHHhcCCCeEEEeCCCCCC
Confidence 211 1111 234567788889999999999999999854
No 86
>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0
Probab=37.93 E-value=2.8e+02 Score=28.95 Aligned_cols=106 Identities=13% Similarity=0.006 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHccCCCCceEEEEeccC-ChhHHHHHHHcCCcc--EEEEec-CC-CChhhHHHhhhcccCCceeccccc
Q 004263 624 LKWAVHSFRITNCGVQDTTQVHTHMCYS-NFNDIIHSIMDMDAD--VITIEN-SR-SDEKLLSVFREGVKYRAGIGPGVY 698 (765)
Q Consensus 624 l~~~v~a~~~~~~~v~~~~~I~~H~C~g-~~~~i~~~l~~l~~D--~isiE~-~r-~~~~~L~~~~~~~~~~~~l~~GVv 698 (765)
.+.+....+.+.+- +..|++|+-.| ...+.++.|.+.+++ .+.+.. .+ .+.+....+.+ .|-.|+++-+
T Consensus 167 ~~~f~aq~~~A~~~---glPViiH~r~g~~a~~~l~iL~e~~~~~~~vvi~H~~~s~~~e~a~~~l~---~G~~i~~~g~ 240 (330)
T 3pnz_A 167 EKTIRAVARAHHET---KAPIHSHTEAGTMALEQIEILKQENIPLEYLSIGHMDRNLDPYYHKQVAK---TGAFMSFDGI 240 (330)
T ss_dssp HHHHHHHHHHHHHH---CCCEEEECGGGCCHHHHHHHHHHTTCCGGGEEETTGGGSCCHHHHHHHHT---TTCEEEECCT
T ss_pred HHHHHHHHHHHHHH---CCeEEEeCCCCcChHHHHHHHHHcCCCCCeEEEecCCCCCCHHHHHHHHH---cCcEEEEccC
Confidence 34444445444332 35699996543 233457777666554 444431 12 24565555554 2445555533
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 004263 699 DIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKT 737 (765)
Q Consensus 699 d~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~ 737 (765)
-+- ...+-++-.+.+.++++..+.+++.+++||+..+
T Consensus 241 ~t~--~~~~~~~~~~~l~~lv~~g~~drilleTD~p~~~ 277 (330)
T 3pnz_A 241 AKI--KYAPESARIAAILYLVSEGFEDQILVSGDTARKT 277 (330)
T ss_dssp TCT--TTCCHHHHHHHHHHHHHTTCGGGEEECCCCCSGG
T ss_pred ccc--CCCChHHHHHHHHHHHHcCCCCeEEEeCCCCCCC
Confidence 210 1112344667788888888899999999998654
No 87
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=37.23 E-value=1.4e+02 Score=29.09 Aligned_cols=71 Identities=13% Similarity=0.146 Sum_probs=41.2
Q ss_pred HHHHHHHHcCCCeEEeec---cccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEE
Q 004263 190 EVVAELKAAGATWIQFDE---PTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF 266 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDE---P~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~l 266 (765)
+.++.+.++|++|||++. |+.- ... ...+. .+.+.+..+ ..+.++.|+-+. .+.++.+.+.. +|++++
T Consensus 27 ~~i~~~~~~G~d~i~l~~~dg~f~~-~~~-~~~~~----i~~l~~~~~-~~~~v~l~vnd~-~~~v~~~~~~G-ad~v~v 97 (230)
T 1rpx_A 27 EQVKAIEQAGCDWIHVDVMDGRFVP-NIT-IGPLV----VDSLRPITD-LPLDVHLMIVEP-DQRVPDFIKAG-ADIVSV 97 (230)
T ss_dssp HHHHHHHHTTCCCEEEEEEBSSSSS-CBC-CCHHH----HHHHGGGCC-SCEEEEEESSSH-HHHHHHHHHTT-CSEEEE
T ss_pred HHHHHHHHCCCCEEEEeeccCCccc-ccc-cCHHH----HHHHHhccC-CcEEEEEEecCH-HHHHHHHHHcC-CCEEEE
Confidence 456667789999999974 3211 111 01121 122333221 245666676654 44577778899 999988
Q ss_pred Eec
Q 004263 267 DLI 269 (765)
Q Consensus 267 D~~ 269 (765)
-..
T Consensus 98 h~~ 100 (230)
T 1rpx_A 98 HCE 100 (230)
T ss_dssp ECS
T ss_pred Eec
Confidence 765
No 88
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=36.53 E-value=81 Score=32.84 Aligned_cols=63 Identities=11% Similarity=0.036 Sum_probs=42.6
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEe
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~ 268 (765)
+++.+..++|++.||+|-. +.+ .++++...+.. ++.+-.+ |++..+++..+.++. ||.|++=.
T Consensus 218 ~e~~eAl~aGaDiImLDn~------s~~---~l~~av~~~~~---~v~leaS---GGIt~~~i~~~A~tG-VD~IsvGa 280 (300)
T 3l0g_A 218 SQVEESLSNNVDMILLDNM------SIS---EIKKAVDIVNG---KSVLEVS---GCVNIRNVRNIALTG-VDYISIGC 280 (300)
T ss_dssp HHHHHHHHTTCSEEEEESC------CHH---HHHHHHHHHTT---SSEEEEE---SSCCTTTHHHHHTTT-CSEEECGG
T ss_pred HHHHHHHHcCCCEEEECCC------CHH---HHHHHHHhhcC---ceEEEEE---CCCCHHHHHHHHHcC-CCEEEeCc
Confidence 4555566789999999963 333 33444444432 3455555 777567889999999 99998764
No 89
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=36.12 E-value=3.3e+02 Score=26.97 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCcEEEeccccc
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAAL 609 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL 609 (765)
...+.++.+.++|+++|+++-|.-
T Consensus 33 ~~~~~~~~l~~~Gad~ielg~p~~ 56 (262)
T 1rd5_A 33 TTAEALRLLDGCGADVIELGVPCS 56 (262)
T ss_dssp HHHHHHHHHHHTTCSSEEEECCCS
T ss_pred HHHHHHHHHHHcCCCEEEECCCCC
Confidence 344567788899999999998863
No 90
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0
Probab=35.72 E-value=1.4e+02 Score=29.99 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=36.4
Q ss_pred HHHHHhhhcCCCcEEEeCCCCCccccc-ccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHH
Q 004263 309 TLQDLAGTVGKDKVVVSTSCSLLHTAV-DLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQA 385 (765)
Q Consensus 309 ~l~~~~~~~~~~~l~vspsC~L~h~P~-~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~~~~~~~~~~~~~~~~~ 385 (765)
.++++++.+|.+||.+-|||+.+ |+ .-.+| |. .+....++++++.-+ ..+.....+..|...+-
T Consensus 178 ~~~~~v~~ip~drlLlETD~P~~--~~rg~~n~---P~----~v~~v~~~iA~~~g~----~~ee~~~~~~~N~~~lf 242 (254)
T 3gg7_A 178 KGAALIRSMPRDRVLTETDGPFL--ELDGQAAL---PW----DVKSVVEGLSKIWQI----PASEVERIVKENVSRLL 242 (254)
T ss_dssp HHHHHHHHSCGGGEEECCCTTTS--EETTEECC---GG----GHHHHHHHHHHHHTS----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEeCCCCcc--ccCCCCCC---HH----HHHHHHHHHHHHhCc----CHHHHHHHHHHHHHHHH
Confidence 45677778899999999999986 43 21222 22 233455666665322 11223444556665543
No 91
>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A*
Probab=35.57 E-value=4.7e+02 Score=28.53 Aligned_cols=160 Identities=14% Similarity=0.086 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHcCCcEEEeccccccc----CCCCCC-CCHHHHHHHHHHHHHHHHccCCCCceEEEEecc----------
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALRE----GLPLRK-SEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCY---------- 650 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~----~l~l~~-~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~---------- 650 (765)
.+.+.++.++++|+.-|+|.+-.... -++.+. .+.++..+... +.+.+......+.-|.--+--
T Consensus 161 nv~rtVk~~~~AGaAGi~IEDQ~~~~KkCGH~~gk~lvp~ee~v~rI~-AAr~A~~~~g~d~vIiARTDA~~a~l~~s~~ 239 (433)
T 3eol_A 161 DAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLN-AARLAADVMGTPTLIVARTDAEAAKLLTSDI 239 (433)
T ss_dssp HHHHHHHHHHHHTCSEEEEESBCC---------CCEECCHHHHHHHHH-HHHHHHHHHTCCCEEEEEECTTTCCEESCCC
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCCCcCCCCCCCcccCHHHHHHHHH-HHHHHHHhcCCCEEEEEEcCCccccccccCc
Confidence 35567888999999999999966421 111111 23455444332 223332211112322222210
Q ss_pred -----------------------CChhHHHHH---HHcCCccEEEEecCCCChhhHHHhhhccc--CCceeccccccCCC
Q 004263 651 -----------------------SNFNDIIHS---IMDMDADVITIENSRSDEKLLSVFREGVK--YRAGIGPGVYDIHS 702 (765)
Q Consensus 651 -----------------------g~~~~i~~~---l~~l~~D~isiE~~r~~~~~L~~~~~~~~--~~~~l~~GVvd~~s 702 (765)
+.+++.+.. ..+ ++|+|.+|+...+.+.++.|.+... ++..+..+ ..+
T Consensus 240 d~rd~~fl~g~g~r~~eG~y~~~~gld~AI~Ra~AY~~-GAD~If~e~~~~~~eei~~f~~~v~~~~P~~~L~~---~~s 315 (433)
T 3eol_A 240 DERDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAP-YCDLIWMETSKPDLAQARRFAEAVHKAHPGKLLAY---NCS 315 (433)
T ss_dssp STTTGGGBCSSSCBCTTCCEEBCCSHHHHHHHHHHHGG-GCSEEEECCSSCCHHHHHHHHHHHHHHSTTCCEEE---ECC
T ss_pred ccccccceeccCcccccccccccCCHHHHHHHHHHHHh-cCCEEEEeCCCCCHHHHHHHHHHhcccCCCccccc---CCC
Confidence 234444443 345 9999999976556666666654111 23222222 123
Q ss_pred CCCC-----CHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 004263 703 PRIP-----STEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQ 760 (765)
Q Consensus 703 ~~ve-----~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r~~ 760 (765)
|-.. +.+++...+.++.+ +|...+.+++ .-...+...|.++++.++++
T Consensus 316 Psfnw~~~~~~~~~~~f~~eLa~-lGv~~v~~~~---------a~~raa~~A~~~~a~~i~~~ 368 (433)
T 3eol_A 316 PSFNWKKNLDDATIAKFQRELGA-MGYKFQFITL---------AGFHQLNYGMFELARGYKDR 368 (433)
T ss_dssp SSSCHHHHSCHHHHHHHHHHHHH-HTEEEEEETT---------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccCChhHHhHHHHHHHH-cCCeEEEeCc---------HHHHHHHHHHHHHHHHHHHc
Confidence 3333 67777766666654 6666665544 33466777777777777653
No 92
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=35.10 E-value=71 Score=33.04 Aligned_cols=65 Identities=14% Similarity=0.153 Sum_probs=40.2
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEe
Q 004263 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (765)
Q Consensus 191 ~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~ 268 (765)
++++..++|+++|++|- ++.+++....+. +....+++.+..+ |++..+++..+.+.. ||+|.+=-
T Consensus 205 ea~eA~~aGaD~I~LDn------~~~e~l~~av~~---l~~~~~~v~ieAS---GGIt~eni~~~a~tG-VD~IsvGs 269 (285)
T 1o4u_A 205 DALRAVEAGADIVMLDN------LSPEEVKDISRR---IKDINPNVIVEVS---GGITEENVSLYDFET-VDVISSSR 269 (285)
T ss_dssp HHHHHHHTTCSEEEEES------CCHHHHHHHHHH---HHHHCTTSEEEEE---ECCCTTTGGGGCCTT-CCEEEEGG
T ss_pred HHHHHHHcCCCEEEECC------CCHHHHHHHHHH---hhccCCCceEEEE---CCCCHHHHHHHHHcC-CCEEEEeH
Confidence 44445678999999997 333444333333 3221123456556 666557788888999 99988643
No 93
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=34.87 E-value=1.6e+02 Score=29.04 Aligned_cols=67 Identities=15% Similarity=0.250 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCCeEEeec------cccccCCChHHHHHHHHHHHHHHccCC-CCcEEEEeccCCCchhhHHHHhcCCCcc
Q 004263 190 EVVAELKAAGATWIQFDE------PTLVLDLDSHKLQAFSDAYSELQSSLS-GLNVLIETYFADVPAETYKILTSLKGVT 262 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDE------P~L~~d~~~~~~~~~~~~y~~l~~~~~-~~~i~l~tyfg~~~~~~~~~l~~l~~vd 262 (765)
+.++.+.++|++|||+|. |.+.. .. ...+.+.+..+ ...+|+-++ +. +..++.+.+.. +|
T Consensus 21 ~~i~~~~~~Gad~ihldi~DG~fvp~~~~--g~-------~~v~~lr~~~~~~~~vhlmv~--dp-~~~i~~~~~aG-ad 87 (230)
T 1tqj_A 21 EEIKAVDEAGADWIHVDVMDGRFVPNITI--GP-------LIVDAIRPLTKKTLDVHLMIV--EP-EKYVEDFAKAG-AD 87 (230)
T ss_dssp HHHHHHHHTTCSEEEEEEEBSSSSSCBCB--CH-------HHHHHHGGGCCSEEEEEEESS--SG-GGTHHHHHHHT-CS
T ss_pred HHHHHHHHcCCCEEEEEEEecCCCcchhh--hH-------HHHHHHHhhcCCcEEEEEEcc--CH-HHHHHHHHHcC-CC
Confidence 466777889999999998 22221 11 22222322211 124555553 32 34568888889 99
Q ss_pred EEEEEec
Q 004263 263 GFGFDLI 269 (765)
Q Consensus 263 ~l~lD~~ 269 (765)
++++=..
T Consensus 88 gv~vh~e 94 (230)
T 1tqj_A 88 IISVHVE 94 (230)
T ss_dssp EEEEECS
T ss_pred EEEECcc
Confidence 9966554
No 94
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=34.83 E-value=4.2e+02 Score=27.69 Aligned_cols=147 Identities=7% Similarity=-0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCeEEe--------eccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCC
Q 004263 189 KEVVAELKAAGATWIQF--------DEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKG 260 (765)
Q Consensus 189 ~~~l~~L~~~G~~~VQi--------DEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~ 260 (765)
.++++.|.++|++.|.+ -.|.........+- ..+.+.+..+.+++.+-++.+.-..+-++...+..
T Consensus 33 ~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e-----~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~aG- 106 (345)
T 1nvm_A 33 RAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLE-----YIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAG- 106 (345)
T ss_dssp HHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHH-----HHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHT-
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHH-----HHHHHHhhCCCCEEEEEecCCcccHHHHHHHHhCC-
Q ss_pred ccEEEEEeccCC-CChhhHhh-hCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcccccccc
Q 004263 261 VTGFGFDLIRGT-KTLDLIKT-EFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLE 338 (765)
Q Consensus 261 vd~l~lD~~~~~-~~l~~l~~-~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h~P~~~~ 338 (765)
||++++-..-+. +......+ .-..+..+...+.|+ .+.+++.+.+.++.+.+ .|.+.|.+.-.-|... |.+
T Consensus 107 vd~v~I~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~a---~~~~~e~~~~ia~~~~~-~Ga~~i~l~DT~G~~~-P~~-- 179 (345)
T 1nvm_A 107 ARVVRVATHCTEADVSKQHIEYARNLGMDTVGFLMMS---HMIPAEKLAEQGKLMES-YGATCIYMADSGGAMS-MND-- 179 (345)
T ss_dssp CCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEEEST---TSSCHHHHHHHHHHHHH-HTCSEEEEECTTCCCC-HHH--
T ss_pred cCEEEEEEeccHHHHHHHHHHHHHHCCCEEEEEEEeC---CCCCHHHHHHHHHHHHH-CCCCEEEECCCcCccC-HHH--
Q ss_pred cccCCcHHHHhHHHHHHHHHHHHHH
Q 004263 339 NETKLDQEIKSWLAFAAQKVVEVNA 363 (765)
Q Consensus 339 ~E~~l~~~~~~~lafA~qKl~el~~ 363 (765)
..+-++.|..
T Consensus 180 ---------------v~~lv~~l~~ 189 (345)
T 1nvm_A 180 ---------------IRDRMRAFKA 189 (345)
T ss_dssp ---------------HHHHHHHHHH
T ss_pred ---------------HHHHHHHHHH
No 95
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=33.71 E-value=90 Score=32.21 Aligned_cols=65 Identities=11% Similarity=0.031 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD 267 (765)
+++++..++|+++|++|-. +.+++....+. +....+++++.++ |++..+++..+.+.+ ||+|.+=
T Consensus 205 eea~eal~aGaD~I~LDn~------~~~~~~~~v~~---l~~~~~~v~ieaS---GGIt~~~i~~~a~tG-VD~isvG 269 (284)
T 1qpo_A 205 EQLDAVLPEKPELILLDNF------AVWQTQTAVQR---RDSRAPTVMLESS---GGLSLQTAATYAETG-VDYLAVG 269 (284)
T ss_dssp HHHHHHGGGCCSEEEEETC------CHHHHHHHHHH---HHHHCTTCEEEEE---SSCCTTTHHHHHHTT-CSEEECG
T ss_pred HHHHHHHHcCCCEEEECCC------CHHHHHHHHHH---hhccCCCeEEEEE---CCCCHHHHHHHHhcC-CCEEEEC
Confidence 3566667789999999973 33333333333 3221123466666 777567899999999 9998843
No 96
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=33.63 E-value=1.1e+02 Score=30.11 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=64.2
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEecc
Q 004263 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR 270 (765)
Q Consensus 191 ~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~ 270 (765)
.++.+.++|+++||+-++.-.........+.+. .+. .. ...+++..+..+. .+ +..+.+.. +|++++--..
T Consensus 35 ~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~----~i~-~~-~ipvi~~Ggi~~~-~~-~~~~~~~G-ad~V~lg~~~ 105 (241)
T 1qo2_A 35 LVEKLIEEGFTLIHVVDLSNAIENSGENLPVLE----KLS-EF-AEHIQIGGGIRSL-DY-AEKLRKLG-YRRQIVSSKV 105 (241)
T ss_dssp HHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHH----HGG-GG-GGGEEEESSCCSH-HH-HHHHHHTT-CCEEEECHHH
T ss_pred HHHHHHHcCCCEEEEecccccccCCchhHHHHH----HHH-hc-CCcEEEECCCCCH-HH-HHHHHHCC-CCEEEECchH
Confidence 344556889999999886442111111233332 232 21 2467777665544 33 45566788 9999886442
Q ss_pred --CCCChhhHhhhCCCCCEEEEEEeeCC------CCCcC----CHHHHHHHHHHHhhhcCCCcEEEeC
Q 004263 271 --GTKTLDLIKTEFPLGKYLFAGVVDGR------NIWAN----DLASSLTTLQDLAGTVGKDKVVVST 326 (765)
Q Consensus 271 --~~~~l~~l~~~~p~~k~l~lGvVdgr------n~~~e----d~~~~~~~l~~~~~~~~~~~l~vsp 326 (765)
+++.+..+ +.++ ..+.+|+ |.+ +-|.+ +..+. ++++.+ .|.+.+++++
T Consensus 106 l~~p~~~~~~-~~~g--~~i~~~~-d~~~~~v~~~g~~~~~~~~~~e~---~~~~~~-~G~~~i~~t~ 165 (241)
T 1qo2_A 106 LEDPSFLKSL-REID--VEPVFSL-DTRGGRVAFKGWLAEEEIDPVSL---LKRLKE-YGLEEIVHTE 165 (241)
T ss_dssp HHCTTHHHHH-HTTT--CEEEEEE-EEETTEECCTTCSSCSCCCHHHH---HHHHHT-TTCCEEEEEE
T ss_pred hhChHHHHHH-HHcC--CcEEEEE-EecCCEEEECCceecCCCCHHHH---HHHHHh-CCCCEEEEEe
Confidence 34445555 4464 2455554 333 34554 44443 444433 5667777754
No 97
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=33.56 E-value=2.4e+02 Score=29.73 Aligned_cols=91 Identities=16% Similarity=0.206 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEeccc-------ccccCCCCCC----CCHHHHHHHHHHHHHHHHccCCCCceEEEEe
Q 004263 580 CYQIALAIKDEVEDLEKAGITVIQIDEA-------ALREGLPLRK----SEQDFYLKWAVHSFRITNCGVQDTTQVHTHM 648 (765)
Q Consensus 580 ~~~la~al~~ev~~L~~aG~~~IQiDEP-------aL~~~l~l~~----~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~ 648 (765)
+.++...+.+-.+...++|++.|+|.-- .++.....|. -+...-.+...+.++.+-+.++++..|.+-+
T Consensus 138 I~~ii~~f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRl 217 (343)
T 3kru_A 138 IKSIVKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRV 217 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEE
T ss_pred HHHHHHHHHHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEe
Confidence 4566667777777778899999999942 2222211121 1223334455666666666676555666665
Q ss_pred ccCC----------hhHHHHHHHcCCccEEEEe
Q 004263 649 CYSN----------FNDIIHSIMDMDADVITIE 671 (765)
Q Consensus 649 C~g~----------~~~i~~~l~~l~~D~isiE 671 (765)
.-.+ +..+...|.+. +|.|++-
T Consensus 218 s~~~~~~~g~~~~~~~~~a~~l~~~-vd~i~vs 249 (343)
T 3kru_A 218 SADDYMEGGINIDMMVEYINMIKDK-VDLIDVS 249 (343)
T ss_dssp ECCCSSTTSCCHHHHHHHHHHHTTT-CSEEEEE
T ss_pred echhhhccCccHHHHHHHHHHhhcc-ccEEecc
Confidence 5322 23566777788 9999884
No 98
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=33.18 E-value=99 Score=32.51 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=41.9
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD 267 (765)
+++++..++|++.|++|-. +.++ ++++-..+.. +++|..+ |++..+++..+.+.+ ||+|++=
T Consensus 242 dea~eAl~aGaD~I~LDn~------~~~~---l~~av~~l~~---~v~ieaS---GGIt~~~I~~~a~tG-VD~isvG 303 (320)
T 3paj_A 242 AELEEAISAGADIIMLDNF------SLEM---MREAVKINAG---RAALENS---GNITLDNLKECAETG-VDYISVG 303 (320)
T ss_dssp HHHHHHHHTTCSEEEEESC------CHHH---HHHHHHHHTT---SSEEEEE---SSCCHHHHHHHHTTT-CSEEECT
T ss_pred HHHHHHHHcCCCEEEECCC------CHHH---HHHHHHHhCC---CCeEEEE---CCCCHHHHHHHHHcC-CCEEEEC
Confidence 3455556789999999974 2233 3444333432 4567777 877667888899999 9998763
No 99
>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2}
Probab=33.02 E-value=1.1e+02 Score=32.49 Aligned_cols=112 Identities=10% Similarity=0.077 Sum_probs=62.0
Q ss_pred CChHHHHHHHHHHHHHHccCCCCcEEEEec-cCCCchhhHHHHhcCCCc--cEE---EEEeccCCCChhhHhhhCCCCCE
Q 004263 214 LDSHKLQAFSDAYSELQSSLSGLNVLIETY-FADVPAETYKILTSLKGV--TGF---GFDLIRGTKTLDLIKTEFPLGKY 287 (765)
Q Consensus 214 ~~~~~~~~~~~~y~~l~~~~~~~~i~l~ty-fg~~~~~~~~~l~~l~~v--d~l---~lD~~~~~~~l~~l~~~~p~~k~ 287 (765)
..+.+.+.|....+ ++.... ..|++|+- -|.-..+.+..|.+.. + ..+ |.+-.. .+++..++.+..+-.
T Consensus 184 ~t~~q~~~f~aq~~-~A~~~g-lPV~iH~~gr~~a~~e~l~iL~e~g-~~~~~vvi~H~~~s~--~~~e~a~~~l~~G~~ 258 (364)
T 3k2g_A 184 FTAEEEKSLRGAAR-AQVRTG-LPLMVHLPGWFRLAHRVLDLVEEEG-ADLRHTVLCHMNPSH--MDPVYQATLAQRGAF 258 (364)
T ss_dssp CCHHHHHHHHHHHH-HHHHHC-CCEEEECCTTSCCHHHHHHHHHHTT-CCGGGEEECCCGGGT--TCHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHHH-HHHHHC-CeEEEecCCCCccHHHHHHHHHHcC-CCCCceEEECCCCCC--CCHHHHHHHHhCCcE
Confidence 44556666665544 322222 35888862 3332256677776544 3 333 333211 145444432222446
Q ss_pred EEEEEeeCCC-------CCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 004263 288 LFAGVVDGRN-------IWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (765)
Q Consensus 288 l~lGvVdgrn-------~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~ 331 (765)
|+++-+ |.. .|..+-.+-.+.|+++.+..+.+||.+++||+.+
T Consensus 259 I~f~g~-gt~~~f~~~~~~~~~d~~ra~~l~~lv~~gp~drilleTD~p~~ 308 (364)
T 3k2g_A 259 LEFDMI-GMDFFYADQGVQCPSDDEVARAILGLADHGYLDRILLSHDVFVK 308 (364)
T ss_dssp EEECCT-TCCCEETTTTEECCCHHHHHHHHHHHHHTTCGGGEEECCCCCSG
T ss_pred EEecCC-cccccccccccccccHHHHHHHHHHHHHhCCcccEEEeCCCCCC
Confidence 776643 221 1233445677788888888888999999999874
No 100
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0
Probab=32.59 E-value=3.9e+02 Score=26.71 Aligned_cols=96 Identities=7% Similarity=0.004 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHccCCCCceEE-EEeccCChhHHHHHHHcCCccEEEEecCC-CChhhHHHhhhcccCCceeccccccCC
Q 004263 624 LKWAVHSFRITNCGVQDTTQVH-THMCYSNFNDIIHSIMDMDADVITIENSR-SDEKLLSVFREGVKYRAGIGPGVYDIH 701 (765)
Q Consensus 624 l~~~v~a~~~~~~~v~~~~~I~-~H~C~g~~~~i~~~l~~l~~D~isiE~~r-~~~~~L~~~~~~~~~~~~l~~GVvd~~ 701 (765)
.+.+..-++.+.+- +..|+ +|+- ....++++.+.+.+...-.+=-.- .+.+.++.+.+ . +-.+++|-+-+
T Consensus 103 ~~~F~~ql~lA~e~---~lPviSiH~r-~a~~~~~~il~~~~~~~~~v~H~fsG~~e~a~~~l~-~--G~yis~~g~~~- 174 (254)
T 3gg7_A 103 FAVFQHILRRCEDH---GGRILSIHSR-RAESEVLNCLEANPRSGTPILHWYSGSVTELRRAIS-L--GCWFSVGPTMV- 174 (254)
T ss_dssp HHHHHHHHHHHHHT---TCEEEEEECT-TCHHHHHHHHHHCGGGEEEEEETCCSCHHHHHHHHH-T--TCEEEECHHHH-
T ss_pred HHHHHHHHHHHHHc---CCCEEEEEcC-CcHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHc-C--CcEEEECcccC-
Confidence 34444555554432 46787 9954 666788888877654321122122 24555555544 1 33344432211
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCC
Q 004263 702 SPRIPSTEEIADRINKMLAVLESNILWVNPDCGLK 736 (765)
Q Consensus 702 s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~ 736 (765)
. .+.++++++.+|.+++.+.+||...
T Consensus 175 -----~----~~~~~~~v~~ip~drlLlETD~P~~ 200 (254)
T 3gg7_A 175 -----R----TQKGAALIRSMPRDRVLTETDGPFL 200 (254)
T ss_dssp -----T----SHHHHHHHHHSCGGGEEECCCTTTS
T ss_pred -----c----hHHHHHHHHHcCCCeEEEeCCCCcc
Confidence 1 2456788888999999999999875
No 101
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=31.69 E-value=2.4e+02 Score=28.81 Aligned_cols=98 Identities=9% Similarity=0.055 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCcc---EEEEecCCCChhhHHHhhhcccCCceeccc-ccc
Q 004263 624 LKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD---VITIENSRSDEKLLSVFREGVKYRAGIGPG-VYD 699 (765)
Q Consensus 624 l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D---~isiE~~r~~~~~L~~~~~~~~~~~~l~~G-Vvd 699 (765)
.+.+...++.+.+- +..|.+|+- ....++++.|.+.+.+ +|.--++ .+.+.++.+-+ . |-.+++| .+.
T Consensus 113 ~~~F~~ql~lA~e~---~lPv~iH~r-~a~~~~l~il~~~~~~~~~~V~H~fs-G~~e~a~~~l~-~--G~yis~~g~i~ 184 (287)
T 3rcm_A 113 EKALEAQLTLAAQL---RLPVFLHER-DASERLLAILKDYRDHLTGAVVHCFT-GEREALFAYLD-L--DLHIGITGWIC 184 (287)
T ss_dssp HHHHHHHHHHHHHH---TCCEEEEEE-SCHHHHHHHHHTTGGGCSCEEECSCC-CCHHHHHHHHH-T--TCEEEECGGGG
T ss_pred HHHHHHHHHHHHHh---CCCEEEEcC-CcHHHHHHHHHHcCCCCCeEEEEeCC-CCHHHHHHHHH-C--CcEEEECchhc
Confidence 34445555554432 356889964 5567888888776543 3321122 24555555444 1 3334433 222
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 004263 700 IHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKT 737 (765)
Q Consensus 700 ~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~ 737 (765)
- . .+ .+.++++++.+|.+++.+.+||...+
T Consensus 185 ~-~---k~----~~~l~~~v~~ip~drlLlETD~P~l~ 214 (287)
T 3rcm_A 185 D-E---RR----GTHLHPLVGNIPEGRLMLESDAPYLL 214 (287)
T ss_dssp C-T---TT----CGGGHHHHTTSCTTSEEECCCTTSCC
T ss_pred c-c---cC----HHHHHHHHHhcCCccEEEeccCCccC
Confidence 1 0 01 13456777889999999999998754
No 102
>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A*
Probab=31.14 E-value=3.3e+02 Score=28.89 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=54.8
Q ss_pred CceEEEEeccCChh-HHHHHHHcCCcc--EEEE---ecCCCChhhHHHhhhcccCCceeccccccC-CCCCCCCHHHHHH
Q 004263 641 TTQVHTHMCYSNFN-DIIHSIMDMDAD--VITI---ENSRSDEKLLSVFREGVKYRAGIGPGVYDI-HSPRIPSTEEIAD 713 (765)
Q Consensus 641 ~~~I~~H~C~g~~~-~i~~~l~~l~~D--~isi---E~~r~~~~~L~~~~~~~~~~~~l~~GVvd~-~s~~ve~~eev~~ 713 (765)
+..|.+|+-.+.-. +.++.|.+.++| .+.+ +. ..+.+.++.+.+ .+-.|+..-+=. .....++-++-++
T Consensus 206 G~Pv~iHt~~~~~~~e~l~iL~eeG~~~~~vvi~H~~~-~~d~~~~~~~l~---~G~yl~fD~iG~~~~~~~p~d~~r~~ 281 (360)
T 3tn4_A 206 GAVIITHTQEGTMGPEQAAYLLEHGADPKKIVIGHMCD-NTDPDYHRKTLA---YGVYIAFDRFGIQGMVGAPTDEERVR 281 (360)
T ss_dssp CCEEEEECSTTCCHHHHHHHHHHTTCCGGGEEECCGGG-CCCHHHHHHHHT---TTCEEEECCTTCCCSTTCCCHHHHHH
T ss_pred CCcEEEEcCcccCCHHHHHHHHHcCCCCCceEEEcCCC-CCCHHHHHHHHH---cCCEEEEcccccccccCCCChHHHHH
Confidence 46799997655421 456777777664 3444 32 235555555544 133444321111 1122456677788
Q ss_pred HHHHHHhhcCCCcEEEcCCCC
Q 004263 714 RINKMLAVLESNILWVNPDCG 734 (765)
Q Consensus 714 ~i~~a~~~i~~~~l~vsPdCG 734 (765)
.|.++++..+.+|+.++.||+
T Consensus 282 ~l~~lv~~g~~drILLstDa~ 302 (360)
T 3tn4_A 282 TLLALLRDGYEKQIMLSHDTV 302 (360)
T ss_dssp HHHHHHHTTCGGGEEECCCCE
T ss_pred HHHHHHHhcCcceEEEecCCC
Confidence 899999999999999999993
No 103
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=30.54 E-value=76 Score=33.06 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=36.8
Q ss_pred HHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEE
Q 004263 590 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVI 668 (765)
Q Consensus 590 ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~i 668 (765)
|+.+..++|+++|++|.... + .++.++...+ + ++.+-.. |+.+ +.+..+.+.++|+|
T Consensus 219 e~~eAl~aGaDiImLDn~s~-----------~-~l~~av~~~~-------~--~v~leaS-GGIt~~~i~~~A~tGVD~I 276 (300)
T 3l0g_A 219 QVEESLSNNVDMILLDNMSI-----------S-EIKKAVDIVN-------G--KSVLEVS-GCVNIRNVRNIALTGVDYI 276 (300)
T ss_dssp HHHHHHHTTCSEEEEESCCH-----------H-HHHHHHHHHT-------T--SSEEEEE-SSCCTTTHHHHHTTTCSEE
T ss_pred HHHHHHHcCCCEEEECCCCH-----------H-HHHHHHHhhc-------C--ceEEEEE-CCCCHHHHHHHHHcCCCEE
Confidence 34444568999999996432 2 2333333221 1 2334433 6554 56788999999999
Q ss_pred EEe
Q 004263 669 TIE 671 (765)
Q Consensus 669 siE 671 (765)
|+=
T Consensus 277 svG 279 (300)
T 3l0g_A 277 SIG 279 (300)
T ss_dssp ECG
T ss_pred EeC
Confidence 987
No 104
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=30.41 E-value=3e+02 Score=28.65 Aligned_cols=90 Identities=13% Similarity=0.114 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEecccc-------cccCCCCCC----CCHHHHHHHHHHHHHHHHccCCCCceEEEEe
Q 004263 580 CYQIALAIKDEVEDLEKAGITVIQIDEAA-------LREGLPLRK----SEQDFYLKWAVHSFRITNCGVQDTTQVHTHM 648 (765)
Q Consensus 580 ~~~la~al~~ev~~L~~aG~~~IQiDEPa-------L~~~l~l~~----~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~ 648 (765)
+.++...+.+-.+.+.++|++.|+|+--. |+.....|. -+...-.+...+.++.+.+.+ +..|.+-+
T Consensus 139 I~~~i~~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v--~~pv~vri 216 (338)
T 1z41_A 139 VKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW--DGPLFVRV 216 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC--CSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc--CCcEEEEe
Confidence 45566677777777888999999998521 111111121 122222333344444443334 24466666
Q ss_pred ccC----------ChhHHHHHHHcCCccEEEEe
Q 004263 649 CYS----------NFNDIIHSIMDMDADVITIE 671 (765)
Q Consensus 649 C~g----------~~~~i~~~l~~l~~D~isiE 671 (765)
.-. ++..+...+.+.++|.|++-
T Consensus 217 s~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~ 249 (338)
T 1z41_A 217 SASDYTDKGLDIADHIGFAKWMKEQGVDLIDCS 249 (338)
T ss_dssp ECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 532 12356677788999999985
No 105
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...
Probab=30.15 E-value=4.7e+02 Score=26.90 Aligned_cols=122 Identities=11% Similarity=-0.040 Sum_probs=62.0
Q ss_pred CeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEec-cCCCchhhHHHHhcCCCcc--E---EEEEeccCCCC
Q 004263 201 TWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETY-FADVPAETYKILTSLKGVT--G---FGFDLIRGTKT 274 (765)
Q Consensus 201 ~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~ty-fg~~~~~~~~~l~~l~~vd--~---l~lD~~~~~~~ 274 (765)
+.+-| |.-|.....+...+.|....+ ++... ...+++|+- .|.-..+.++.|.+.. ++ . .|.++ .++
T Consensus 130 k~~ai-EiGld~~~~~~q~~~f~~q~~-lA~~~-glPv~iH~~~~~r~a~e~l~iL~~~g-~~~~~~~i~H~f~---~~~ 202 (330)
T 2ob3_A 130 RAGII-KVATTGKATPFQELVLKAAAR-ASLAT-GVPVTTHTAASQRDGEQQAAIFESEG-LSPSRVCIGHSDD---TDD 202 (330)
T ss_dssp CCSEE-EEECSSSCCHHHHHHHHHHHH-HHHHH-CCCEEEECCGGGTHHHHHHHHHHHTT-CCGGGEEECSGGG---CCC
T ss_pred ceeEE-EEeCCCCCCHHHHHHHHHHHH-HHHHh-CCeEEEECCCCCCCHHHHHHHHHHcC-cCcccEEEeCCCC---CCC
Confidence 44555 654432234445555555543 33322 246888863 2211013355555444 32 2 23332 134
Q ss_pred hhhHhhhCCCCCEEEEEEeeCCCCC-------------cCCHHHHHHHHHHHhhhcCCCcEEEeCCCCC
Q 004263 275 LDLIKTEFPLGKYLFAGVVDGRNIW-------------ANDLASSLTTLQDLAGTVGKDKVVVSTSCSL 330 (765)
Q Consensus 275 l~~l~~~~p~~k~l~lGvVdgrn~~-------------~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L 330 (765)
++..++.+..+-.|+++. -|.... ..+.++-.+.++++.+..+.+||.++|||+.
T Consensus 203 ~e~a~~~~~~G~~i~~~~-~G~~tf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~drilleTD~p~ 270 (330)
T 2ob3_A 203 LSYLTALAARGYLIGLDH-IPYSAIGLEDNASASALLGIRSWQTRALLIKALIDQGYMKQILVSNDWTF 270 (330)
T ss_dssp HHHHHHHHHTTCEEEECC-TTCCCTTCTTCHHHHHHHCSSCHHHHHHHHHHHHHTTCGGGEEECCCCCS
T ss_pred HHHHHHHHhCCCEEEeCC-CccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCC
Confidence 444443222344677653 132222 1223345566888888888899999999996
No 106
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=30.05 E-value=3.2e+02 Score=28.59 Aligned_cols=87 Identities=15% Similarity=0.215 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEecccc-------cccCCCCC----CCCHH---HHHHHHHHHHHHHHccCCCCceEE
Q 004263 580 CYQIALAIKDEVEDLEKAGITVIQIDEAA-------LREGLPLR----KSEQD---FYLKWAVHSFRITNCGVQDTTQVH 645 (765)
Q Consensus 580 ~~~la~al~~ev~~L~~aG~~~IQiDEPa-------L~~~l~l~----~~~~~---~~l~~~v~a~~~~~~~v~~~~~I~ 645 (765)
+.++...+.+-.+...++|++.|+|+--- |+.....| +-+.. .++-..+++.+.++ +..|.
T Consensus 139 I~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v-----~~pv~ 213 (340)
T 3gr7_A 139 IEETVQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVW-----DGPLF 213 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-----CSCEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhc-----CCceE
Confidence 55666677777777788999999999532 12111112 11222 23344455555544 23455
Q ss_pred EEeccC----------ChhHHHHHHHcCCccEEEEe
Q 004263 646 THMCYS----------NFNDIIHSIMDMDADVITIE 671 (765)
Q Consensus 646 ~H~C~g----------~~~~i~~~l~~l~~D~isiE 671 (765)
+-+.-. ++..+...|.+.++|.|++-
T Consensus 214 vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs 249 (340)
T 3gr7_A 214 VRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVS 249 (340)
T ss_dssp EEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEE
T ss_pred EEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 555432 23467788888999999985
No 107
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=28.96 E-value=92 Score=32.40 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=40.7
Q ss_pred HHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEe
Q 004263 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (765)
Q Consensus 191 ~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~ 268 (765)
++++..++|++.|++|-. +. +.++++...+. +++++..+ |++..+++..+.+.. ||+|++=.
T Consensus 221 e~~eAl~aGaD~I~LDn~------~~---~~l~~av~~i~---~~v~ieaS---GGI~~~~i~~~a~tG-VD~isvG~ 282 (298)
T 3gnn_A 221 QLRTALAHGARSVLLDNF------TL---DMMRDAVRVTE---GRAVLEVS---GGVNFDTVRAIAETG-VDRISIGA 282 (298)
T ss_dssp HHHHHHHTTCEEEEEESC------CH---HHHHHHHHHHT---TSEEEEEE---SSCSTTTHHHHHHTT-CSEEECGG
T ss_pred HHHHHHHcCCCEEEECCC------CH---HHHHHHHHHhC---CCCeEEEE---cCCCHHHHHHHHHcC-CCEEEECC
Confidence 455566789999999973 22 23333333342 23455555 777567889999999 99987643
No 108
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=28.79 E-value=86 Score=31.48 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCCeEEeeccccccCCChHH--------------HHHHHHHHHHHHccCCCCcEEEEeccCCCchhhH
Q 004263 187 VYKEVVAELKAAGATWIQFDEPTLVLDLDSHK--------------LQAFSDAYSELQSSLSGLNVLIETYFADVPAETY 252 (765)
Q Consensus 187 ~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~--------------~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~ 252 (765)
-..++++.|.++|+++||++-|.--.-.+... .+...+..+.+.+.. ...+++-+|+...-..-+
T Consensus 33 ~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~-~~Pv~~m~~~~~~~~~~~ 111 (262)
T 1rd5_A 33 TTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPEL-SCPVVLLSYYKPIMFRSL 111 (262)
T ss_dssp HHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGC-SSCEEEECCSHHHHSCCT
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCEEEEecCcHHHHHHH
Confidence 34467788889999999999886411111111 111223333443332 235766666542100112
Q ss_pred HHHhcCCCccEEEE
Q 004263 253 KILTSLKGVTGFGF 266 (765)
Q Consensus 253 ~~l~~l~~vd~l~l 266 (765)
+.+.+.. +||+++
T Consensus 112 ~~a~~aG-adgv~v 124 (262)
T 1rd5_A 112 AKMKEAG-VHGLIV 124 (262)
T ss_dssp HHHHHTT-CCEEEC
T ss_pred HHHHHcC-CCEEEE
Confidence 3477888 999997
No 109
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=28.59 E-value=2.8e+02 Score=29.33 Aligned_cols=91 Identities=9% Similarity=0.106 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEecccc-------cccCCCCCC----CCHHHHHHHHHHHHHHHHccCCCCceEEEEec
Q 004263 581 YQIALAIKDEVEDLEKAGITVIQIDEAA-------LREGLPLRK----SEQDFYLKWAVHSFRITNCGVQDTTQVHTHMC 649 (765)
Q Consensus 581 ~~la~al~~ev~~L~~aG~~~IQiDEPa-------L~~~l~l~~----~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C 649 (765)
.++...+.+-.+...++|++.|+|+--. |+.....|. -+...-.+.+.+.++.+.+.++++ .|.+-+.
T Consensus 157 ~~~i~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~-~v~vrls 235 (364)
T 1vyr_A 157 PGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSAD-RIGIRVS 235 (364)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGG-GEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence 3444555555666778999999997521 111111111 122333344555555555555544 5666443
Q ss_pred cCC--------------hhHHHHHHHcCCccEEEEec
Q 004263 650 YSN--------------FNDIIHSIMDMDADVITIEN 672 (765)
Q Consensus 650 ~g~--------------~~~i~~~l~~l~~D~isiE~ 672 (765)
-++ +..+...+.+.++|.|++-.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~ 272 (364)
T 1vyr_A 236 PIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSE 272 (364)
T ss_dssp CSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 221 22356777888999998863
No 110
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=28.10 E-value=2.5e+02 Score=29.95 Aligned_cols=90 Identities=9% Similarity=0.074 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEecccc-------cccCCCCCC----CCHHHHHHHHHHHHHHHHccCCCCceEEEEec
Q 004263 581 YQIALAIKDEVEDLEKAGITVIQIDEAA-------LREGLPLRK----SEQDFYLKWAVHSFRITNCGVQDTTQVHTHMC 649 (765)
Q Consensus 581 ~~la~al~~ev~~L~~aG~~~IQiDEPa-------L~~~l~l~~----~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C 649 (765)
.++...+.+-.+...++|++.|+|+--. |+.....|. -+...-.+...+.++.+.+.++++ .|.+-+.
T Consensus 162 ~~~i~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~-~v~vrls 240 (377)
T 2r14_A 162 PGIVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPE-RVGIRLT 240 (377)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG-GEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCC-cEEEEec
Confidence 3445555555666678999999998421 111111111 122222334444444444444433 5666653
Q ss_pred cCC-------------hhHHHHHHHcCCccEEEEe
Q 004263 650 YSN-------------FNDIIHSIMDMDADVITIE 671 (765)
Q Consensus 650 ~g~-------------~~~i~~~l~~l~~D~isiE 671 (765)
-.+ +..+...|.+.++|.|++-
T Consensus 241 ~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~ 275 (377)
T 2r14_A 241 PFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFN 275 (377)
T ss_dssp TTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred cccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 211 2245677788999999885
No 111
>1ete_A FLT3 ligand; four-helix bundle, cytokine; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 3qs7_A* 3qs9_A
Probab=28.09 E-value=35 Score=30.19 Aligned_cols=13 Identities=23% Similarity=0.652 Sum_probs=11.6
Q ss_pred eCCCCCccccccc
Q 004263 325 STSCSLLHTAVDL 337 (765)
Q Consensus 325 spsC~L~h~P~~~ 337 (765)
+|+|+|.|.|++-
T Consensus 1 ~pdCsF~~SPISS 13 (134)
T 1ete_A 1 TQDCSFQHSPISS 13 (134)
T ss_dssp CCCCCCSSCCCCT
T ss_pred CCCCccCCCcchh
Confidence 5899999999984
No 112
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=27.86 E-value=1.5e+02 Score=30.29 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCCeEEeeccccccCC--ChHHHHH--------------HHHHHHHHHccCCCCcEEEEeccCC-----
Q 004263 188 YKEVVAELKAAGATWIQFDEPTLVLDL--DSHKLQA--------------FSDAYSELQSSLSGLNVLIETYFAD----- 246 (765)
Q Consensus 188 y~~~l~~L~~~G~~~VQiDEP~L~~d~--~~~~~~~--------------~~~~y~~l~~~~~~~~i~l~tyfg~----- 246 (765)
..++++.|.++|+++|.|+=|+ .|. +...++. +-+..+.+.+......+++-+||..
T Consensus 34 ~~~~~~~l~~~GaD~iElgiPf--SDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g 111 (267)
T 3vnd_A 34 SLKIIQTLVDNGADALELGFPF--SDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANG 111 (267)
T ss_dssp HHHHHHHHHHTTCSSEEEECCC--SCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEECCCC--CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhh
Confidence 4567788999999999999874 232 2112221 1223333433212345888889753
Q ss_pred CchhhHHHHhcCCCccEEEE
Q 004263 247 VPAETYKILTSLKGVTGFGF 266 (765)
Q Consensus 247 ~~~~~~~~l~~l~~vd~l~l 266 (765)
+ +.-+..+.+.. |||+-+
T Consensus 112 ~-e~f~~~~~~aG-vdgvii 129 (267)
T 3vnd_A 112 I-DEFYTKAQAAG-VDSVLI 129 (267)
T ss_dssp H-HHHHHHHHHHT-CCEEEE
T ss_pred H-HHHHHHHHHcC-CCEEEe
Confidence 3 44566777888 999655
No 113
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=27.45 E-value=2.7e+02 Score=29.64 Aligned_cols=90 Identities=13% Similarity=0.131 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEecccc-------cccCCCCCC----CCHHHHHHHHHHHHHHHHccCCCCceEEEEec
Q 004263 581 YQIALAIKDEVEDLEKAGITVIQIDEAA-------LREGLPLRK----SEQDFYLKWAVHSFRITNCGVQDTTQVHTHMC 649 (765)
Q Consensus 581 ~~la~al~~ev~~L~~aG~~~IQiDEPa-------L~~~l~l~~----~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C 649 (765)
.++...+.+-.+...++|++.|+|+--. |+.....|. -+...-.+.+.+.++.+.+.++++ .|.+-+.
T Consensus 163 ~~~i~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~-~V~vrls 241 (376)
T 1icp_A 163 PQIVNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSD-RVGIRIS 241 (376)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG-GEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCC-ceEEEec
Confidence 3444555555666778999999998521 111111111 122233344444444444444433 4555543
Q ss_pred cC---------C----hhHHHHHHHcCCccEEEEe
Q 004263 650 YS---------N----FNDIIHSIMDMDADVITIE 671 (765)
Q Consensus 650 ~g---------~----~~~i~~~l~~l~~D~isiE 671 (765)
-. + +..+...|.+.++|.|++-
T Consensus 242 ~~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~ 276 (376)
T 1icp_A 242 PFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVV 276 (376)
T ss_dssp TTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEE
T ss_pred cccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 11 1 2356677788899999885
No 114
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei}
Probab=27.31 E-value=6.4e+02 Score=27.52 Aligned_cols=159 Identities=12% Similarity=0.075 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHcCCcEEEecccccc----cCCCCCC-CCHHHHHHHHHHHHHHHHccCCCCceEEEEecc----------
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALR----EGLPLRK-SEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCY---------- 650 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~----~~l~l~~-~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~---------- 650 (765)
.+.+.++.++++|+.-|+|.+-... .-++.+. .+.++..+... +.+.+......+.-|.--+--
T Consensus 168 ~v~~~vk~~~~aGaaGi~iEDq~~~~KkCGH~~gk~lv~~~e~v~rI~-Aar~A~~~~g~d~~IiARTDa~~a~l~~s~~ 246 (439)
T 3i4e_A 168 NAFELMKAMIEAGASGVHFEDQLASVKKCGHMGGKVLVPTREAVAKLT-AARLAADVMGTPTVLVARTDAEAADLITSDI 246 (439)
T ss_dssp HHHHHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCCBCCHHHHHHHHH-HHHHHHHHHTCCCEEEEEECTTTCCEESCCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCCccccCCCCCCeecCHHHHHHHHH-HHHHHHHhcCCCeEEEEEcCccccccccccc
Confidence 3556788889999999999996542 1111111 23444443322 333332211112322222210
Q ss_pred ---------------------CChhHHHHHH---HcCCccEEEEecCCCChhhHHHhhhccc--CCceeccccccCCCCC
Q 004263 651 ---------------------SNFNDIIHSI---MDMDADVITIENSRSDEKLLSVFREGVK--YRAGIGPGVYDIHSPR 704 (765)
Q Consensus 651 ---------------------g~~~~i~~~l---~~l~~D~isiE~~r~~~~~L~~~~~~~~--~~~~l~~GVvd~~s~~ 704 (765)
+.+++.+... .+ ++|+|.+|....+.+.++.|.+... ++..+..+ ..+|.
T Consensus 247 d~~d~~fi~G~r~~eg~~~~~~gldeAI~Ra~AY~~-GAD~if~E~~~~~~eei~~f~~~v~~~~P~~~l~~---~~sPs 322 (439)
T 3i4e_A 247 DDNDKPYLTGERTVEGFFRTKPGLEQAISRGLAYAP-YADLIWCETGKPDLEYAKKFAEAIHKQFPGKLLSY---NCSPS 322 (439)
T ss_dssp CTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHTT-TCSEEEECCSSCCHHHHHHHHHHHHHHSTTCEEEE---ECCSS
T ss_pred ccccchhhcccCcccccccccCCHHHHHHHHHHHHh-hCCEEEecCCCCCHHHHHHHHHHhcccCCceEEee---CCCCC
Confidence 2345444433 45 9999999976556666666644111 23332222 12333
Q ss_pred CC-----CHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 004263 705 IP-----STEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRT 759 (765)
Q Consensus 705 ve-----~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r~ 759 (765)
.. +.+++..-++++.+ +|...+.++. .-.......|.++++.+++
T Consensus 323 fnw~~~~~~~~~~~f~~eL~~-lGv~~v~~~l---------a~~raa~~A~~~~a~~i~~ 372 (439)
T 3i4e_A 323 FNWKKNLDDATIAKFQKELGA-MGYKFQFITL---------AGFHALNYSMFNLAHGYAR 372 (439)
T ss_dssp SCHHHHSCHHHHHTHHHHHHH-HTCCEEEETT---------HHHHHHHHHHHHHHHHHHH
T ss_pred CcCcccCCHHHHHHHHHHHHH-cCCeEEEeCh---------HHHHHHHHHHHHHHHHHHH
Confidence 33 66777766677655 6766665543 2335666777777777665
No 115
>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15
Probab=27.18 E-value=3e+02 Score=27.22 Aligned_cols=135 Identities=12% Similarity=0.096 Sum_probs=68.5
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
++|+++.+.|+.=|.+-- ....+. .-....+...|+.+.+. +..+.+++.-..+ ......+.+.| +. +-++=.
T Consensus 96 ~el~~~~~~g~~Gi~~~~-~~~~~~-~~~~~~~~~~~~~a~~~--~lpv~iH~~~~~~-~~~~~~~~~~p-l~-~vi~H~ 168 (288)
T 2ffi_A 96 ATLAEMARLGVRGVRLNL-MGQDMP-DLTGAQWRPLLERIGEQ--GWHVELHRQVADI-PVLVRALQPYG-LD-IVIDHF 168 (288)
T ss_dssp HHHHHHHTTTCCEEECCC-SSSCCC-CTTSTTTHHHHHHHHHH--TCEEEECSCTTTH-HHHHHHHTTTT-CC-EEESGG
T ss_pred HHHHHHHHCCCeEEEEec-ccCCCC-CcccHHHHHHHHHHHHC--CCeEEEeechhhH-HHHHHHHHHCC-CC-EEEECC
Confidence 567777778888775531 111001 11123455555554431 2456666554334 45666777777 65 333222
Q ss_pred cCCC--------ChhhHhhhCCCCCEEEEEE--eeCCCCC-cCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcc
Q 004263 270 RGTK--------TLDLIKTEFPLGKYLFAGV--VDGRNIW-ANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLH 332 (765)
Q Consensus 270 ~~~~--------~l~~l~~~~p~~k~l~lGv--Vdgrn~~-~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h 332 (765)
.... .++.+.. +.....+.+++ +-..+.+ ..+.......++.+.+.+|++||+.++|++...
T Consensus 169 g~~~~~~~~~~~~~~~~~~-l~~~~n~y~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~g~drll~gSD~P~~~ 241 (288)
T 2ffi_A 169 GRPDARRGLGQPGFAELLT-LSGRGKVWVKVSGIYRLQGSPEENLAFARQALCALEAHYGAERLMWGSDWPHTQ 241 (288)
T ss_dssp GSCCTTSCTTCTTHHHHTT-CCCCSCEEEEEECGGGSSSCHHHHHHHHHHHHHHHHHHTCGGGEEEECCTTCTT
T ss_pred CCCCCCCCCCChhHHHHHH-HHhCCCEEEEeCcchhhccccCCCHHHHHHHHHHHHHHhCCCceEEecCCCCCC
Confidence 1111 1344433 32222354444 1111111 111233446688888888999999999998753
No 116
>4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii}
Probab=26.62 E-value=93 Score=31.69 Aligned_cols=204 Identities=12% Similarity=0.040 Sum_probs=102.0
Q ss_pred ecccCceeecceecCC--CccccCCccchHHH-HHHHHcCCCCceEeehHHHHh-------hhc-cCC-CCcC-CCCCHH
Q 004263 112 WFDTNYHYIVPELGPD--VNFSYASHKAVQEY-KEAKALGMETVPVLVGPVSYL-------LLS-KPA-KGVE-KSFSLL 178 (765)
Q Consensus 112 wfdtNyhY~vPe~~~~--~~~~l~~~~~~~e~-~~a~~~g~~~K~vl~GP~T~l-------~l~-~~~-~~y~-~~~~~~ 178 (765)
.+||.-|+..|.+.-. ..+........+++ ..+++.|+ .+.|+++|.... .+. +.. ..+. .+.++.
T Consensus 27 ~iDtH~Hl~~~~~p~~~~~~~~p~~~~~~e~~l~~~~~~GV-~~~V~v~~~~~~~~n~~~~~~~~~~p~r~~g~~~v~P~ 105 (294)
T 4i6k_A 27 CIDTHAHVFSTQDHSIETARYAPDYEATVQSFISHLDEHNF-THGVLVQPSFLGTNNQAMLNAIQQYPDRLKGIAVVQHT 105 (294)
T ss_dssp SEEEEECCBCTTSCCCTTCSCCCCSCBCHHHHHHHHHHTTC-CEEEEECCGGGTTCCHHHHHHHHHSTTTEEEEECCCTT
T ss_pred ceEeeeEeecCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCC-CeEEEecCcccccchHHHHHHHHHCCCeEEEEEEeCCc
Confidence 4788888876554210 01111112345555 45666675 467777765421 111 110 1110 012332
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcC
Q 004263 179 SLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSL 258 (765)
Q Consensus 179 ~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l 258 (765)
. . .++|+++.+.|+.=|-++-- ......-..+.+...|+.+.+- ...+.+++.-..+ .+..+.+.+.
T Consensus 106 ~-----~---~~eL~~l~~~gv~Gi~l~~~--~~~~~~~~~~~~~~~~~~a~~~--glpv~iH~~~~~l-~~~~~~l~~~ 172 (294)
T 4i6k_A 106 T-----T---FNELVNLKAQGIVGVRLNLF--GLNLPALNTPDWQKFLRNVESL--NWQVELHAPPKYL-VQLLPQLNEY 172 (294)
T ss_dssp C-----C---HHHHHHHHTTTEEEEEEECT--TSCCCCSSSHHHHHHHHHHHHT--TCEEEEECCHHHH-HHHHHHHTTS
T ss_pred c-----c---HHHHHHHHHCCCcEEEeccC--CCCCCCcccHHHHHHHHHHHHc--CCEEEEeeCcchH-HHHHHHHHHC
Confidence 1 0 25677787888888877531 1111111235666666666542 3456666543334 4566667778
Q ss_pred CCccEEEEEeccCCC--------ChhhHhhhCCCCCEEEEEEeeCCCCCc---CCHHHHHHHHHHHhhhcCCCcEEEeCC
Q 004263 259 KGVTGFGFDLIRGTK--------TLDLIKTEFPLGKYLFAGVVDGRNIWA---NDLASSLTTLQDLAGTVGKDKVVVSTS 327 (765)
Q Consensus 259 ~~vd~l~lD~~~~~~--------~l~~l~~~~p~~k~l~lGvVdgrn~~~---ed~~~~~~~l~~~~~~~~~~~l~vsps 327 (765)
| +.. -++--.++. .++.+.. +.....+.+++ +|-.... .........++++++.+|++||+..||
T Consensus 173 p-~~~-Vi~H~g~p~~~~g~~~~~~~~~~~-l~~~~nv~~k~-Sg~~~~~~~~~~~~~~~~~l~~~~~~~g~dRll~gSD 248 (294)
T 4i6k_A 173 S-FDV-VIDHFGRVDPVKGIEDPDYQKFLS-LLNVKQHWIKV-SGFYRLGATPSNINIAQQAYNIFKEKGFLHKLIWGSD 248 (294)
T ss_dssp S-SCE-EESGGGCCCTTTCTTCHHHHHHHH-HCCTTTEEEEC-CCGGGSSSTTHHHHHHHHHHHHHHHHTCGGGEECCCC
T ss_pred C-CCE-EEECCCCCCCCCCCCCHHHHHHHH-HHhCCCEEEEe-cccccccccCCCchhhHHHHHHHHHHhCcccEEEeCC
Confidence 8 653 333322211 1233332 22222344443 1211111 112344567888888899999999999
Q ss_pred CCCccc
Q 004263 328 CSLLHT 333 (765)
Q Consensus 328 C~L~h~ 333 (765)
|+....
T Consensus 249 ~P~~~~ 254 (294)
T 4i6k_A 249 WPHTQH 254 (294)
T ss_dssp BTCTTC
T ss_pred CCCCCC
Confidence 998754
No 117
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=26.59 E-value=2.5e+02 Score=26.81 Aligned_cols=92 Identities=8% Similarity=0.065 Sum_probs=49.0
Q ss_pred HHHHHHHHcCCCeEEeec--cccccCCC--hHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEE
Q 004263 190 EVVAELKAAGATWIQFDE--PTLVLDLD--SHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFG 265 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDE--P~L~~d~~--~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~ 265 (765)
+.++.+.++|++|||+|. -.+....+ .+..+. +.+.. ...+.++.+.-+. .+..+.+.++. +|+++
T Consensus 20 ~~~~~~~~~G~~~i~~~~~dg~~~~~~~~g~~~i~~-------i~~~~-~~~~~v~l~v~d~-~~~i~~~~~~g-ad~v~ 89 (220)
T 2fli_A 20 SELARIEETDAEYVHIDIMDGQFVPNISFGADVVAS-------MRKHS-KLVFDCHLMVVDP-ERYVEAFAQAG-ADIMT 89 (220)
T ss_dssp HHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHH-------HHTTC-CSEEEEEEESSSG-GGGHHHHHHHT-CSEEE
T ss_pred HHHHHHHHcCCCEEEEEeecCCCCCccccCHHHHHH-------HHHhC-CCCEEEEEeecCH-HHHHHHHHHcC-CCEEE
Confidence 456667788999999995 11111111 222222 32221 2345666565555 44468888899 99997
Q ss_pred EEeccCCCChhhHhhhC-CCCCEEEEEE
Q 004263 266 FDLIRGTKTLDLIKTEF-PLGKYLFAGV 292 (765)
Q Consensus 266 lD~~~~~~~l~~l~~~~-p~~k~l~lGv 292 (765)
+-.... +....+.+.+ ..++.+++.+
T Consensus 90 vh~~~~-~~~~~~~~~~~~~g~~i~~~~ 116 (220)
T 2fli_A 90 IHTEST-RHIHGALQKIKAAGMKAGVVI 116 (220)
T ss_dssp EEGGGC-SCHHHHHHHHHHTTSEEEEEE
T ss_pred EccCcc-ccHHHHHHHHHHcCCcEEEEE
Confidence 765443 3332222211 1245666665
No 118
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=26.28 E-value=3.9e+02 Score=27.61 Aligned_cols=130 Identities=20% Similarity=0.198 Sum_probs=73.7
Q ss_pred HHHHHcCCCeEEe--ec-cccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 193 AELKAAGATWIQF--DE-PTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 193 ~~L~~~G~~~VQi--DE-P~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
+++.+.|++.|-| .| |.+..+ .+.+.+.++.+.+.. ...+.++ -|.+..+.+..|.+.. ++.+.+.+.
T Consensus 101 ~~~~~~G~~~i~l~gGe~p~~~~~-----~~~~~~l~~~ik~~~-~i~i~~s--~g~~~~e~l~~L~~aG-~~~i~i~lE 171 (350)
T 3t7v_A 101 KTLKGAGFHMVDLTMGEDPYYYED-----PNRFVELVQIVKEEL-GLPIMIS--PGLMDNATLLKAREKG-ANFLALYQE 171 (350)
T ss_dssp HHHTTSCCSEEEEEECCCHHHHHS-----THHHHHHHHHHHHHH-CSCEEEE--CSSCCHHHHHHHHHTT-EEEEECCCB
T ss_pred HHHHHCCCCEEEEeeCCCCccccC-----HHHHHHHHHHHHhhc-CceEEEe--CCCCCHHHHHHHHHcC-CCEEEEeee
Confidence 4456789986644 45 643211 233344444443321 1345443 3544366788899998 998887554
Q ss_pred cC----------CCChhhHhhh---C-CCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCccccc
Q 004263 270 RG----------TKTLDLIKTE---F-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAV 335 (765)
Q Consensus 270 ~~----------~~~l~~l~~~---~-p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h~P~ 335 (765)
.. ..+++.+.+. . ..+-.+..|+|=|- -++.+++.+.++.+.+ ++++.+.+.+=.+....|.
T Consensus 172 t~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl---get~e~~~~~l~~l~~-l~~~~v~~~~f~p~~gT~l 247 (350)
T 3t7v_A 172 TYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVEDGILTGV---GNDIESTILSLRGMST-NDPDMVRVMTFLPQEGTPL 247 (350)
T ss_dssp CSCHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEEEESS---SCCHHHHHHHHHHHHH-TCCSEEEEEECCCCTTSTT
T ss_pred cCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEccceEeec---CCCHHHHHHHHHHHHh-CCCCEEEecceeeCCCCcC
Confidence 31 1233332221 0 12345888999887 4777877777777765 5667777776544444443
No 119
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=26.24 E-value=1e+02 Score=31.93 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=35.8
Q ss_pred HHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEEE
Q 004263 591 VEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVIT 669 (765)
Q Consensus 591 v~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~is 669 (765)
+.+..++|+++|++|-... + .++.++...+ +. +.+-.. |+.+ +.+..+.+.++|+|+
T Consensus 211 a~eAl~aGaD~I~LDn~~~-----------~-~l~~av~~~~-------~~--v~ieaS-GGIt~~~i~~~a~tGVD~Is 268 (287)
T 3tqv_A 211 LNQAIAAKADIVMLDNFSG-----------E-DIDIAVSIAR-------GK--VALEVS-GNIDRNSIVAIAKTGVDFIS 268 (287)
T ss_dssp HHHHHHTTCSEEEEESCCH-----------H-HHHHHHHHHT-------TT--CEEEEE-SSCCTTTHHHHHTTTCSEEE
T ss_pred HHHHHHcCCCEEEEcCCCH-----------H-HHHHHHHhhc-------CC--ceEEEE-CCCCHHHHHHHHHcCCCEEE
Confidence 3344467999999997432 2 2333333221 12 233333 6554 567889999999999
Q ss_pred Ee
Q 004263 670 IE 671 (765)
Q Consensus 670 iE 671 (765)
+=
T Consensus 269 vG 270 (287)
T 3tqv_A 269 VG 270 (287)
T ss_dssp CS
T ss_pred EC
Confidence 85
No 120
>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15
Probab=26.22 E-value=4.8e+02 Score=25.68 Aligned_cols=105 Identities=12% Similarity=0.126 Sum_probs=56.3
Q ss_pred CceEEEEeccCChhHHHHHHHcCCccEEEEe-cCCCC---------hhhHHHhhhcccCCc-eecc-ccccCCCCC-CCC
Q 004263 641 TTQVHTHMCYSNFNDIIHSIMDMDADVITIE-NSRSD---------EKLLSVFREGVKYRA-GIGP-GVYDIHSPR-IPS 707 (765)
Q Consensus 641 ~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE-~~r~~---------~~~L~~~~~~~~~~~-~l~~-GVvd~~s~~-ve~ 707 (765)
+..|.+|+-..+..++...+.+.+.. +.+. ..... .+.+..+.+ .++ .+.+ |++.. +.. -.+
T Consensus 137 ~lpv~iH~~~~~~~~~~~~~~~~pl~-~vi~H~g~~~~~~~~~~~~~~~~~~l~~---~~n~y~~~sg~~~~-~~~~~~~ 211 (288)
T 2ffi_A 137 GWHVELHRQVADIPVLVRALQPYGLD-IVIDHFGRPDARRGLGQPGFAELLTLSG---RGKVWVKVSGIYRL-QGSPEEN 211 (288)
T ss_dssp TCEEEECSCTTTHHHHHHHHTTTTCC-EEESGGGSCCTTSCTTCTTHHHHTTCCC---CSCEEEEEECGGGS-SSCHHHH
T ss_pred CCeEEEeechhhHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCChhHHHHHHHHh---CCCEEEEeCcchhh-ccccCCC
Confidence 35688887655566677777777744 4554 21111 233322222 111 1222 12221 111 011
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEcCCCCCCCC----ChhhHHHHHHHH
Q 004263 708 TEEIADRINKMLAVLESNILWVNPDCGLKTR----KYSEVKPALSNM 750 (765)
Q Consensus 708 ~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~----~~~~~~~kL~~m 750 (765)
.......++.+++.+|++++...+|+..... +.....+.+..+
T Consensus 212 ~~~~~~~~~~~~~~~g~drll~gSD~P~~~~~~~~~~~~~~~~~~~~ 258 (288)
T 2ffi_A 212 LAFARQALCALEAHYGAERLMWGSDWPHTQHESEVSFGSAVEQFEAL 258 (288)
T ss_dssp HHHHHHHHHHHHHHTCGGGEEEECCTTCTTCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCceEEecCCCCCCCCCCCCHHHHHHHHHHH
Confidence 2445567888889999999999999988653 334444555443
No 121
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=26.08 E-value=1.1e+02 Score=29.78 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=41.4
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEe
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~ 268 (765)
+.++.+.++|+++|+++++...........+. ...+.+.. ...+++..+..+. .. +..+.+.. +|++++-.
T Consensus 37 ~~a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~----i~~i~~~~-~ipvi~~g~i~~~-~~-~~~~~~~G-ad~V~i~~ 107 (253)
T 1h5y_A 37 EMAVRYEEEGADEIAILDITAAPEGRATFIDS----VKRVAEAV-SIPVLVGGGVRSL-ED-ATTLFRAG-ADKVSVNT 107 (253)
T ss_dssp HHHHHHHHTTCSCEEEEECCCCTTTHHHHHHH----HHHHHHHC-SSCEEEESSCCSH-HH-HHHHHHHT-CSEEEESH
T ss_pred HHHHHHHHcCCCEEEEEeCCccccCCcccHHH----HHHHHHhc-CCCEEEECCCCCH-HH-HHHHHHcC-CCEEEECh
Confidence 45566778999999999864322111112222 33333322 2467777665555 44 46666778 99988754
No 122
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=26.02 E-value=4e+02 Score=26.12 Aligned_cols=84 Identities=15% Similarity=0.253 Sum_probs=49.1
Q ss_pred HHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEE
Q 004263 589 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 668 (765)
Q Consensus 589 ~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~i 668 (765)
+.++.+.+.|+++||+.+-. .+ ..+.++.+.+..+ +..+...+... ++-++...+.++|.+
T Consensus 33 ~~~~al~~gGv~~iel~~k~---------~~-------~~~~i~~l~~~~~-~l~vgaGtvl~--~d~~~~A~~aGAd~v 93 (224)
T 1vhc_A 33 PLADTLAKNGLSVAEITFRS---------EA-------AADAIRLLRANRP-DFLIAAGTVLT--AEQVVLAKSSGADFV 93 (224)
T ss_dssp HHHHHHHHTTCCEEEEETTS---------TT-------HHHHHHHHHHHCT-TCEEEEESCCS--HHHHHHHHHHTCSEE
T ss_pred HHHHHHHHcCCCEEEEeccC---------ch-------HHHHHHHHHHhCc-CcEEeeCcEee--HHHHHHHHHCCCCEE
Confidence 34556778999999998421 11 1234444444444 34555555442 467888889999999
Q ss_pred EEecCCCChhhHHHhhhcccCCceeccc
Q 004263 669 TIENSRSDEKLLSVFREGVKYRAGIGPG 696 (765)
Q Consensus 669 siE~~r~~~~~L~~~~~~~~~~~~l~~G 696 (765)
.... .+.+.++...+ ++..+.+|
T Consensus 94 ~~p~--~d~~v~~~ar~---~g~~~i~G 116 (224)
T 1vhc_A 94 VTPG--LNPKIVKLCQD---LNFPITPG 116 (224)
T ss_dssp ECSS--CCHHHHHHHHH---TTCCEECE
T ss_pred EECC--CCHHHHHHHHH---hCCCEEec
Confidence 7652 24444454443 34445556
No 123
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=25.80 E-value=5.5e+02 Score=26.23 Aligned_cols=127 Identities=18% Similarity=0.142 Sum_probs=69.2
Q ss_pred HHHHHcCCCeEEe--ec-cccccCCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 004263 193 AELKAAGATWIQF--DE-PTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (765)
Q Consensus 193 ~~L~~~G~~~VQi--DE-P~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~ 269 (765)
+.+.+.|++.|.| .| |.+. .+.+.+.++.+.+. ...+.++ -|.+..+.+..|.+.. ++.+.+.+.
T Consensus 94 ~~~~~~g~~~i~~~gGe~p~~~-------~~~~~~li~~i~~~--~~~i~~s--~g~l~~e~l~~L~~ag-~~~v~i~le 161 (348)
T 3iix_A 94 RLAVQFGAKTIVLQSGEDPYXM-------PDVISDIVKEIKKM--GVAVTLS--LGEWPREYYEKWKEAG-ADRYLLRHE 161 (348)
T ss_dssp HHHHHTTCSEEEEEESCCGGGT-------THHHHHHHHHHHTT--SCEEEEE--CCCCCHHHHHHHHHHT-CCEEECCCB
T ss_pred HHHHHCCCCEEEEEeCCCCCcc-------HHHHHHHHHHHHhc--CceEEEe--cCCCCHHHHHHHHHhC-CCEEeeeee
Confidence 3456679886544 45 4332 13344445555432 2344433 3444367788888888 888887665
Q ss_pred cC----------CCChhhHhhh---C-CCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcccc
Q 004263 270 RG----------TKTLDLIKTE---F-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTA 334 (765)
Q Consensus 270 ~~----------~~~l~~l~~~---~-p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~h~P 334 (765)
.. ..+++.+.+. + ..+-.+..|++-|... ++.+++.+.++.+.+ ++.+.+.+.|=...-..|
T Consensus 162 t~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p~--et~e~~~~~~~~l~~-l~~~~i~i~~~~p~~gt~ 237 (348)
T 3iix_A 162 TANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPG--QTIDDLVDDLLFLKE-HDFDMVGIGPFIPHPDTP 237 (348)
T ss_dssp CSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBEESCTT--CCHHHHHHHHHHHHH-HTCSEECCEECCCCTTST
T ss_pred eCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCeeccceEEeCCC--CCHHHHHHHHHHHHh-cCCCEEeeeeeecCCCCC
Confidence 32 2344433321 1 1244688888888732 456666655655544 355666666644444444
No 124
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=25.80 E-value=2.7e+02 Score=27.27 Aligned_cols=67 Identities=10% Similarity=0.086 Sum_probs=41.8
Q ss_pred HHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEEEEe
Q 004263 592 EDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIE 671 (765)
Q Consensus 592 ~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE 671 (765)
+.++++|++.|++.++.-... .. ....+.++.+.+.. +..+.+|-...+..+ ++.+.++++|.+.+-
T Consensus 37 ~~~~~~Gad~i~v~d~~~~~~------~~----~~~~~~i~~i~~~~--~ipvi~~ggI~~~~~-~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 37 KFYSEIGIDELVFLDITASVE------KR----KTMLELVEKVAEQI--DIPFTVGGGIHDFET-ASELILRGADKVSIN 103 (253)
T ss_dssp HHHHHTTCCEEEEEESSCSSS------HH----HHHHHHHHHHHTTC--CSCEEEESSCCSHHH-HHHHHHTTCSEEEES
T ss_pred HHHHHcCCCEEEEECCchhhc------CC----cccHHHHHHHHHhC--CCCEEEeCCCCCHHH-HHHHHHcCCCEEEEC
Confidence 556789999999997643210 11 12233444454443 356777765545444 677778899999987
No 125
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=25.70 E-value=5.1e+02 Score=26.39 Aligned_cols=132 Identities=12% Similarity=0.076 Sum_probs=78.9
Q ss_pred HHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEE--EeccCCCchhhHHHHhcCCCccEEEEE
Q 004263 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI--ETYFADVPAETYKILTSLKGVTGFGFD 267 (765)
Q Consensus 190 ~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l--~tyfg~~~~~~~~~l~~l~~vd~l~lD 267 (765)
++++.|.++|++.|++==|... +.+.+.+...-+.+ +.+++.. -+.-.++ +..++.+.... ++.+++=
T Consensus 31 ~i~~~L~~~Gv~~IE~g~p~~~----~~d~e~v~~i~~~~----~~~~i~~l~~~~~~di-~~a~~~~~~ag-~~~v~i~ 100 (293)
T 3ewb_X 31 QIALQLEKLGIDVIEAGFPISS----PGDFECVKAIAKAI----KHCSVTGLARCVEGDI-DRAEEALKDAV-SPQIHIF 100 (293)
T ss_dssp HHHHHHHHHTCSEEEEECGGGC----HHHHHHHHHHHHHC----CSSEEEEEEESSHHHH-HHHHHHHTTCS-SEEEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCCC----ccHHHHHHHHHHhc----CCCEEEEEecCCHHHH-HHHHHHHhhcC-CCEEEEE
Confidence 4666788899999998767643 34555554443322 2233322 1111224 44555555677 8888865
Q ss_pred eccCC------------CChhhHhhh----CCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 004263 268 LIRGT------------KTLDLIKTE----FPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (765)
Q Consensus 268 ~~~~~------------~~l~~l~~~----~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~ 331 (765)
...+. +.++.+.+. -..+..+.+++-|+ -+.|++.+++.++.+.+ .|.+.|.+.-.-|..
T Consensus 101 ~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~---~~~~~~~~~~~~~~~~~-~G~~~i~l~DT~G~~ 176 (293)
T 3ewb_X 101 LATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDA---TRSDRAFLIEAVQTAID-AGATVINIPDTVGYT 176 (293)
T ss_dssp EECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETG---GGSCHHHHHHHHHHHHH-TTCCEEEEECSSSCC
T ss_pred ecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccC---CCCCHHHHHHHHHHHHH-cCCCEEEecCCCCCC
Confidence 43220 111222210 12345677888764 47899999999988876 588999999999986
Q ss_pred ccccc
Q 004263 332 HTAVD 336 (765)
Q Consensus 332 h~P~~ 336 (765)
.|..
T Consensus 177 -~P~~ 180 (293)
T 3ewb_X 177 -NPTE 180 (293)
T ss_dssp -CHHH
T ss_pred -CHHH
Confidence 4654
No 126
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A
Probab=25.22 E-value=6.9e+02 Score=27.21 Aligned_cols=158 Identities=14% Similarity=0.131 Sum_probs=81.3
Q ss_pred HHHHHHHHHHcCCcEEEecccccc----cCCCCCC-CCHHHHHHHHHHHHHHHHccCCCCceEEEEecc-----------
Q 004263 587 IKDEVEDLEKAGITVIQIDEAALR----EGLPLRK-SEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCY----------- 650 (765)
Q Consensus 587 l~~ev~~L~~aG~~~IQiDEPaL~----~~l~l~~-~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~----------- 650 (765)
+.+.++.++++|+.-|+|.+-... ..++.+. .+.++..+... +.+.+......+.-|.--+--
T Consensus 169 v~~tv~~~~~aGaaGi~IEDq~~~~KkCGh~~gk~lv~~~e~~~rI~-Aa~~A~~~~~~d~~IiARTDa~aa~l~~s~~d 247 (435)
T 3lg3_A 169 AFELMKAMIEAGAAGVHFEDQLAAVKKCGHMGGKVLVPTQEAIQKLV-AARLAADVLGVPTLLIARTDADAADLLTSDCD 247 (435)
T ss_dssp HHHHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCEECCHHHHHHHHH-HHHHHHHHHTCCCEEEEEECTTTCCEESCCCC
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccccCCCCCCeecCHHHHHHHHH-HHHHHHHhcCCCeEEEEEcCCccccccccccc
Confidence 456678889999999999996541 1111111 23444443332 222222111222322222210
Q ss_pred --------------------CChhHHHH---HHHcCCccEEEEecCCCChhhHHHhhhccc--CCceeccccccCCCCCC
Q 004263 651 --------------------SNFNDIIH---SIMDMDADVITIENSRSDEKLLSVFREGVK--YRAGIGPGVYDIHSPRI 705 (765)
Q Consensus 651 --------------------g~~~~i~~---~l~~l~~D~isiE~~r~~~~~L~~~~~~~~--~~~~l~~GVvd~~s~~v 705 (765)
..+++.+. ...+ ++|+|.+|+...+.+.++.|.+... ++..+..+. .+|-.
T Consensus 248 ~rD~~fi~G~r~~eG~y~~~~gld~AI~Ra~AY~~-GAD~if~E~~~~~~~ei~~f~~~v~~~~P~~~La~~---~sPsf 323 (435)
T 3lg3_A 248 PYDREFITGDRTAEGFFRTRAGIEQAISRGLAYAP-YADLVWCETSTPDLALAKRFADAVHAQFPGKLLAYN---CSPSF 323 (435)
T ss_dssp GGGGGGEEEEECTTCCEEECCSHHHHHHHHHHHGG-GCSEEEECCSSCCHHHHHHHHHHHHHHSTTCEEEEE---CCSSS
T ss_pred cccchhhcccccccccccccCCHHHHHHHHHHHHc-cCCEEEecCCCCCHHHHHHHHHHhccccCCeEEEeC---CCCCc
Confidence 23444443 3345 9999999976556666666644211 333332222 22322
Q ss_pred C-----CHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 004263 706 P-----STEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRT 759 (765)
Q Consensus 706 e-----~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r~ 759 (765)
. +.+++..-.+++.+ +|.....++. .-.......|.+.++.+++
T Consensus 324 nw~~~~~d~~~~~f~~eLa~-lG~~~v~~~l---------a~~raa~~a~~~~a~~~~~ 372 (435)
T 3lg3_A 324 NWKKNLTDQQIASFQDELSA-MGYKYQFITL---------AGIHSMWFNMFDLAHAYAQ 372 (435)
T ss_dssp CHHHHSCHHHHHHHHHHHHH-TTEEEEEETT---------HHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHH-cCCcEEEeCc---------HHHHHHHHHHHHHHHHHHh
Confidence 2 56777777777655 5544444322 2235666677777777766
No 127
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=24.39 E-value=5.8e+02 Score=26.50 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCc---cEEEEecCCCChhhHHHhhhcccCCceeccc
Q 004263 620 QDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA---DVITIENSRSDEKLLSVFREGVKYRAGIGPG 696 (765)
Q Consensus 620 ~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~---D~isiE~~r~~~~~L~~~~~~~~~~~~l~~G 696 (765)
++.-.+.+..-++.+.+.. +..|.+|+- .-..++++.|.+.+. .++--=++ .+.+.++.+-+ .|-.+++|
T Consensus 149 ~~~Q~~~F~~ql~lA~e~~--~lPviiH~r-~A~~d~l~iL~~~~~~~~~gViH~Fs-Gs~e~a~~~l~---lG~yis~~ 221 (325)
T 3ipw_A 149 KETQLSGYRTLSILHQKYP--YLPFFFHCR-KSWSDLCQLNKELGYNGCKGVVHCFD-GTEEEMNQILN---EGWDIGVT 221 (325)
T ss_dssp HHHHHHHHHHTHHHHHHCT--TCCEEEEEE-SCHHHHHHHHHHTTCTTSCEEECSCC-CCHHHHHHHHH---TTCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhh--CCeEEEEeC-chHHHHHHHHHhcCCCCCcEEEEECC-CCHHHHHHHHh---cCcEEeeC
Confidence 3334455566666655413 356889954 667788888876543 22221121 24566666554 24456665
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCC
Q 004263 697 VYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLK 736 (765)
Q Consensus 697 Vvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsPdCGL~ 736 (765)
-+.-+ +.+ .+ ++++.+|.+++.+-+||.+.
T Consensus 222 G~~~k-----~~~----~~-~~v~~iPldrlLlETDaP~l 251 (325)
T 3ipw_A 222 GNSLQ-----SIE----LL-NVMKQIPIERLHIETDCPYC 251 (325)
T ss_dssp SGGGS-----SHH----HH-HHHTTSCGGGEEECCCTTSC
T ss_pred ccccC-----cHH----HH-HHHHhCCcccEEEeCCCccc
Confidence 54211 222 22 57889999999999999874
No 128
>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0
Probab=24.23 E-value=3.6e+02 Score=28.08 Aligned_cols=145 Identities=10% Similarity=0.004 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHH-HHcCCCeEEeecccccc-CCChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhcCC
Q 004263 182 DKIIPVYKEVVAEL-KAAGATWIQFDEPTLVL-DLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLK 259 (765)
Q Consensus 182 ~~L~~~y~~~l~~L-~~~G~~~VQiDEP~L~~-d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~ 259 (765)
++|++.+..++.+. ..-|++-=.| |-.+.. ...+.+.+.|+...+ ++... ...|++|+--|.-..+.++.|.+..
T Consensus 129 e~l~~~~~~ei~~Gi~~t~vkaGvI-EiGld~~~~~~~q~~~f~aq~~-~A~~~-glPViiH~r~g~~a~~~l~iL~e~~ 205 (330)
T 3pnz_A 129 DKLTEFVVNEVENGLEGTPYKAGQV-KFGTGYNMITPLEEKTIRAVAR-AHHET-KAPIHSHTEAGTMALEQIEILKQEN 205 (330)
T ss_dssp HHHHHHHHHHHHTCSTTSSCCEEEE-EEECBTTBCCHHHHHHHHHHHH-HHHHH-CCCEEEECGGGCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhCCCcCcCcCeE-EEEcCCCCCCHHHHHHHHHHHH-HHHHH-CCeEEEeCCCCcChHHHHHHHHHcC
Confidence 45555555555543 2224443222 433332 244556666666644 22222 2458888765321123466776544
Q ss_pred C-ccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 004263 260 G-VTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (765)
Q Consensus 260 ~-vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~ 331 (765)
. ...+.+.-....++++..++.+..+-.|+++-+ +..... .-++..+.++++.+..+.+||.+++||+..
T Consensus 206 ~~~~~vvi~H~~~s~~~e~a~~~l~~G~~i~~~g~-~t~~~~-~~~~~~~~l~~lv~~g~~drilleTD~p~~ 276 (330)
T 3pnz_A 206 IPLEYLSIGHMDRNLDPYYHKQVAKTGAFMSFDGI-AKIKYA-PESARIAAILYLVSEGFEDQILVSGDTARK 276 (330)
T ss_dssp CCGGGEEETTGGGSCCHHHHHHHHTTTCEEEECCT-TCTTTC-CHHHHHHHHHHHHHTTCGGGEEECCCCCSG
T ss_pred CCCCeEEEecCCCCCCHHHHHHHHHcCcEEEEccC-cccCCC-ChHHHHHHHHHHHHcCCCCeEEEeCCCCCC
Confidence 0 334433332212455555443334556666633 111111 123455667777777778999999999975
No 129
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=24.14 E-value=3.5e+02 Score=28.60 Aligned_cols=89 Identities=9% Similarity=0.067 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEecc-----------cccccCCCCCCCCHH---HHHHHHHHHHHHHHccCCCCceEE
Q 004263 580 CYQIALAIKDEVEDLEKAGITVIQIDE-----------AALREGLPLRKSEQD---FYLKWAVHSFRITNCGVQDTTQVH 645 (765)
Q Consensus 580 ~~~la~al~~ev~~L~~aG~~~IQiDE-----------PaL~~~l~l~~~~~~---~~l~~~v~a~~~~~~~v~~~~~I~ 645 (765)
+.++...+.+-.+.+.++|++.|+|+- |....--.--+-+.. .++...+++.+.++ +++ .|.
T Consensus 156 I~~~i~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~v---g~~-pv~ 231 (365)
T 2gou_A 156 IAQVIADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAI---GAE-RVG 231 (365)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHH---CGG-GEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHc---CCC-cEE
Confidence 444556666666677889999999975 322100000011222 23333455555444 323 455
Q ss_pred EEecc-CC------------hhHHHHHHHcCCccEEEEec
Q 004263 646 THMCY-SN------------FNDIIHSIMDMDADVITIEN 672 (765)
Q Consensus 646 ~H~C~-g~------------~~~i~~~l~~l~~D~isiE~ 672 (765)
+-+.- +. +..+...+.+.++|.|++-.
T Consensus 232 vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~ 271 (365)
T 2gou_A 232 VRLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAE 271 (365)
T ss_dssp EEECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred EEEccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 54432 11 22456777888999998863
No 130
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=24.04 E-value=6.3e+02 Score=26.33 Aligned_cols=142 Identities=11% Similarity=0.069 Sum_probs=74.2
Q ss_pred HHHH-HcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh---HHHHHHHcCCcc-
Q 004263 592 EDLE-KAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN---DIIHSIMDMDAD- 666 (765)
Q Consensus 592 ~~L~-~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~---~i~~~l~~l~~D- 666 (765)
+.+. +.|+++|-|---+-+-+ ....+.++ ..+.++.++.. + ++.|.+--| ||-+ ++++..++..++
T Consensus 87 ~~~v~~~GAdiIDIg~eStrP~--~~~vs~ee-~~~~V~~v~~~---~--~vPlsIDg~-~~~T~~~eV~eaAleagag~ 157 (323)
T 4djd_D 87 QKCVAEYGADLIYLKLDGADPE--GANHSVDQ-CVATVKEVLQA---V--GVPLVVVGC-GDVEKDHEVLEAVAEAAAGE 157 (323)
T ss_dssp HHHHHTTCCSEEEEECGGGCTT--TTCCCHHH-HHHHHHHHHHH---C--CSCEEEECC-SCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHcCCCEEEEcCccCCCC--CCCCCHHH-HHHHHHHHHhh---C--CceEEEECC-CCCCCCHHHHHHHHHhcCCC
Confidence 3444 88999988853333322 11234444 33455555443 2 356888867 6543 455555555543
Q ss_pred ---EEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhh-cCCCcEEEcCCCC-CCCCChh
Q 004263 667 ---VITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAV-LESNILWVNPDCG-LKTRKYS 741 (765)
Q Consensus 667 ---~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~-i~~~~l~vsPdCG-L~~~~~~ 741 (765)
+-++...+ .-+.+....+ |+-.+++- |. .+.+.+.++++.+.+. ++.+++++.|.+| |+ .+.+
T Consensus 158 ~~lINsv~~~~-~~~m~~laa~---~g~~vVlm----h~---~d~~~~~~l~~~a~~~GI~~e~IIlDPg~g~fg-k~~e 225 (323)
T 4djd_D 158 NLLLGNAEQEN-YKSLTAACMV---HKHNIIAR----SP---LDINICKQLNILINEMNLPLDHIVIDPSIGGLG-YGIE 225 (323)
T ss_dssp CCEEEEEBTTB-CHHHHHHHHH---HTCEEEEE----CS---SCHHHHHHHHHHHHTTTCCGGGEEEECCCCCTT-TTHH
T ss_pred CCeEEECCccc-HHHHHHHHHH---hCCeEEEE----cc---chHHHHHHHHHHHHHcCCCHHHEEEeCCCcccc-CCHH
Confidence 33433221 2233444443 23332221 21 1355555555555443 3448999999999 55 4666
Q ss_pred hHHHHHHHHHHHH
Q 004263 742 EVKPALSNMVAAA 754 (765)
Q Consensus 742 ~~~~kL~~mv~aa 754 (765)
.....|+.+..+|
T Consensus 226 ~~l~~l~~ir~~a 238 (323)
T 4djd_D 226 YSFSIMERIRLGA 238 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666543
No 131
>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*
Probab=23.26 E-value=2.7e+02 Score=30.03 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEecc
Q 004263 580 CYQIALAIKDEVEDLEKAGITVIQIDE 606 (765)
Q Consensus 580 ~~~la~al~~ev~~L~~aG~~~IQiDE 606 (765)
+.++...+.+-.+...++|++.|+|+-
T Consensus 166 I~~ii~~f~~AA~~a~~AGfDgVEIh~ 192 (402)
T 2hsa_B 166 ISQVVEDYRRSALNAIEAGFDGIEIHG 192 (402)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 344555666666677789999999996
No 132
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=23.25 E-value=2.4e+02 Score=27.82 Aligned_cols=85 Identities=11% Similarity=0.167 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEE
Q 004263 589 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 668 (765)
Q Consensus 589 ~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~i 668 (765)
+.++.+.+.|+++||+.+-.. .+.+.++.+...++ +..+...+... ++-++...+.++|.+
T Consensus 42 ~~~~al~~gGv~~iel~~k~~----------------~~~~~i~~l~~~~~-~~~igagtvl~--~d~~~~A~~aGAd~v 102 (225)
T 1mxs_A 42 PLADALAAGGIRTLEVTLRSQ----------------HGLKAIQVLREQRP-ELCVGAGTVLD--RSMFAAVEAAGAQFV 102 (225)
T ss_dssp HHHHHHHHTTCCEEEEESSST----------------HHHHHHHHHHHHCT-TSEEEEECCCS--HHHHHHHHHHTCSSE
T ss_pred HHHHHHHHCCCCEEEEecCCc----------------cHHHHHHHHHHhCc-ccEEeeCeEee--HHHHHHHHHCCCCEE
Confidence 345567789999999984211 12234444444454 34555555432 366888888999999
Q ss_pred EEecCCCChhhHHHhhhcccCCceecccc
Q 004263 669 TIENSRSDEKLLSVFREGVKYRAGIGPGV 697 (765)
Q Consensus 669 siE~~r~~~~~L~~~~~~~~~~~~l~~GV 697 (765)
+.- ..+.+.++.-.. ++..+.+|+
T Consensus 103 ~~p--~~d~~v~~~~~~---~g~~~i~G~ 126 (225)
T 1mxs_A 103 VTP--GITEDILEAGVD---SEIPLLPGI 126 (225)
T ss_dssp ECS--SCCHHHHHHHHH---CSSCEECEE
T ss_pred EeC--CCCHHHHHHHHH---hCCCEEEee
Confidence 865 224555444333 244455663
No 133
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=23.21 E-value=1.2e+02 Score=31.84 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=34.6
Q ss_pred HHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEEEEe
Q 004263 594 LEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVITIE 671 (765)
Q Consensus 594 L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~isiE 671 (765)
..++|+++|++|-.. ++ .+..++...+ +.+. +-.. |+++ +.+..+.+.++|+|++=
T Consensus 247 Al~aGaD~I~LDn~~-----------~~-~l~~av~~l~-------~~v~--ieaS-GGIt~~~I~~~a~tGVD~isvG 303 (320)
T 3paj_A 247 AISAGADIIMLDNFS-----------LE-MMREAVKINA-------GRAA--LENS-GNITLDNLKECAETGVDYISVG 303 (320)
T ss_dssp HHHTTCSEEEEESCC-----------HH-HHHHHHHHHT-------TSSE--EEEE-SSCCHHHHHHHHTTTCSEEECT
T ss_pred HHHcCCCEEEECCCC-----------HH-HHHHHHHHhC-------CCCe--EEEE-CCCCHHHHHHHHHcCCCEEEEC
Confidence 345799999999743 22 2344443322 1222 3333 6654 56788889999999985
No 134
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=23.20 E-value=5.4e+02 Score=25.75 Aligned_cols=125 Identities=19% Similarity=0.273 Sum_probs=67.1
Q ss_pred HHHHHHHcCCcEE--EecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccC-----C-------hhH
Q 004263 590 EVEDLEKAGITVI--QIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYS-----N-------FND 655 (765)
Q Consensus 590 ev~~L~~aG~~~I--QiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g-----~-------~~~ 655 (765)
+++.+...|+++| -+| .|. ..+..+++...+..++..+..+| .+-+|+. . +-.
T Consensus 37 ~a~~~~~~~aD~vElR~D--~l~------~~~~~~~v~~~l~~lr~~~~~lP-----iI~T~Rt~~EGG~~~~~~~~~~~ 103 (258)
T 4h3d_A 37 EAKELKDACLDIIEWRVD--FFE------NVENIKEVKEVLYELRSYIHDIP-----LLFTFRSVVEGGEKLISRDYYTT 103 (258)
T ss_dssp HHHHHTTSSCSEEEEEGG--GCT------TTTCHHHHHHHHHHHHHHCTTSC-----EEEECCCGGGTCSCCCCHHHHHH
T ss_pred HHHHHhhcCCCEEEEeec--ccc------ccCCHHHHHHHHHHHHHhcCCCC-----EEEEEechhhCCCCCCCHHHHHH
Confidence 3444567799874 445 222 11112344455555665554444 4666753 2 124
Q ss_pred HHHHHHcCC-ccEEEEecCCCChhhHHHhhhc-ccCCceeccccccCCC-CCCCCHHHHHHHHHHHHhhcCCC--cEEEc
Q 004263 656 IIHSIMDMD-ADVITIENSRSDEKLLSVFREG-VKYRAGIGPGVYDIHS-PRIPSTEEIADRINKMLAVLESN--ILWVN 730 (765)
Q Consensus 656 i~~~l~~l~-~D~isiE~~r~~~~~L~~~~~~-~~~~~~l~~GVvd~~s-~~ve~~eev~~~i~~a~~~i~~~--~l~vs 730 (765)
++..+.+.+ +|.+-+|.... .+..+.+.+. +..+..| +++.|+ ...|+.+++..++.++.+ .+++ ++.+.
T Consensus 104 ll~~~~~~~~~d~iDvEl~~~-~~~~~~l~~~a~~~~~ki---I~S~Hdf~~TP~~~el~~~~~~~~~-~gaDIvKia~~ 178 (258)
T 4h3d_A 104 LNKEISNTGLVDLIDVELFMG-DEVIDEVVNFAHKKEVKV---IISNHDFNKTPKKEEIVSRLCRMQE-LGADLPKIAVM 178 (258)
T ss_dssp HHHHHHHTTCCSEEEEEGGGC-HHHHHHHHHHHHHTTCEE---EEEEEESSCCCCHHHHHHHHHHHHH-TTCSEEEEEEC
T ss_pred HHHHHHhcCCchhhHHhhhcc-HHHHHHHHHHHHhCCCEE---EEEEecCCCCCCHHHHHHHHHHHHH-hCCCEEEEEEc
Confidence 555666665 89999995432 2222222110 0112223 445565 346888999999999876 4544 56666
Q ss_pred CC
Q 004263 731 PD 732 (765)
Q Consensus 731 Pd 732 (765)
|.
T Consensus 179 ~~ 180 (258)
T 4h3d_A 179 PQ 180 (258)
T ss_dssp CS
T ss_pred cC
Confidence 63
No 135
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=23.16 E-value=4.3e+02 Score=26.89 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=19.1
Q ss_pred HHHHhhhcCCCcEEEeCCCCCcc
Q 004263 310 LQDLAGTVGKDKVVVSTSCSLLH 332 (765)
Q Consensus 310 l~~~~~~~~~~~l~vspsC~L~h 332 (765)
++++++.+|.+||.+.|||+.+.
T Consensus 192 l~~~v~~ip~drlLlETD~P~l~ 214 (287)
T 3rcm_A 192 LHPLVGNIPEGRLMLESDAPYLL 214 (287)
T ss_dssp GHHHHTTSCTTSEEECCCTTSCC
T ss_pred HHHHHHhcCCccEEEeccCCccC
Confidence 55667778999999999999864
No 136
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=22.63 E-value=3.1e+02 Score=26.56 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=22.1
Q ss_pred eEEEEeccCChhHHHHHHHcCCccEEEE
Q 004263 643 QVHTHMCYSNFNDIIHSIMDMDADVITI 670 (765)
Q Consensus 643 ~I~~H~C~g~~~~i~~~l~~l~~D~isi 670 (765)
.+.+++...++.+.++.+.++++| +-+
T Consensus 2 ~~~~~~p~~~l~~~l~~~~~~G~~-vEl 28 (254)
T 3ayv_A 2 DVRLAFPLSRAEEALPRLQALGLG-AEV 28 (254)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHTCE-EEE
T ss_pred CccccCCHHHHHHHHHHHHhcCCC-EEE
Confidence 467788878888999999999999 744
No 137
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=22.16 E-value=5.7e+02 Score=27.18 Aligned_cols=124 Identities=13% Similarity=0.115 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCc
Q 004263 586 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 665 (765)
Q Consensus 586 al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~ 665 (765)
+..+.+.+|.++||++|-+-=|.. .+.+++..+.+..+ ..++.-+-| |+. ..-.-.+.++
T Consensus 47 atv~Qi~~l~~aG~diVRvavp~~----------------~~a~al~~I~~~~~--vPlvaDiHf-~~~-lal~a~e~G~ 106 (366)
T 3noy_A 47 ATLNQIKRLYEAGCEIVRVAVPHK----------------EDVEALEEIVKKSP--MPVIADIHF-APS-YAFLSMEKGV 106 (366)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCSH----------------HHHHHHHHHHHHCS--SCEEEECCS-CHH-HHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCh----------------HHHHHHHHHHhcCC--CCEEEeCCC-CHH-HHHHHHHhCC
Confidence 455567789999999998864432 12345555544443 344443322 222 3334467789
Q ss_pred cEEEEec--CCCC--h-hhHHHhhhcccCCceeccccccCCCCC-------CCCHHHHHHHHHHH---HhhcCCCcEEEc
Q 004263 666 DVITIEN--SRSD--E-KLLSVFREGVKYRAGIGPGVYDIHSPR-------IPSTEEIADRINKM---LAVLESNILWVN 730 (765)
Q Consensus 666 D~isiE~--~r~~--~-~~L~~~~~~~~~~~~l~~GVvd~~s~~-------ve~~eev~~~i~~a---~~~i~~~~l~vs 730 (765)
|.+.|.- -.++ + +.++..++ ++..+-+||=.+.-+. -+++|.+++...+. ++.++.+++.+|
T Consensus 107 dklRINPGNig~~~~~~~vv~~ak~---~~~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~gf~~iviS 183 (366)
T 3noy_A 107 HGIRINPGNIGKEEIVREIVEEAKR---RGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWGFTNYKVS 183 (366)
T ss_dssp SEEEECHHHHSCHHHHHHHHHHHHH---HTCEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEECCcccCchhHHHHHHHHHHH---cCCCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 9999982 1111 1 33444555 3556666654332211 15777776654443 345678899887
Q ss_pred CC
Q 004263 731 PD 732 (765)
Q Consensus 731 Pd 732 (765)
.-
T Consensus 184 ~K 185 (366)
T 3noy_A 184 IK 185 (366)
T ss_dssp EE
T ss_pred ee
Confidence 63
No 138
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=21.91 E-value=6.4e+02 Score=25.66 Aligned_cols=70 Identities=10% Similarity=0.123 Sum_probs=40.8
Q ss_pred hHHHHHHHcCCccEEEEe--cCC---------C-C----hhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHH
Q 004263 654 NDIIHSIMDMDADVITIE--NSR---------S-D----EKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINK 717 (765)
Q Consensus 654 ~~i~~~l~~l~~D~isiE--~~r---------~-~----~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~ 717 (765)
.+.+..|.+.++|.+.+. +.. . . ++.++.+.+ .+-.+..|++-+.. -++.+++.+.++.
T Consensus 142 ~e~l~~L~~ag~~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~---~Gi~v~~~~i~G~p--~et~e~~~~~~~~ 216 (348)
T 3iix_A 142 REYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKE---LGYETGAGSMVGLP--GQTIDDLVDDLLF 216 (348)
T ss_dssp HHHHHHHHHHTCCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHH---TTCEEEECBEESCT--TCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHH---hCCeeccceEEeCC--CCCHHHHHHHHHH
Confidence 477888988888887654 321 1 1 123344444 24457777776652 2577887777766
Q ss_pred HHhhcCCCcEEE
Q 004263 718 MLAVLESNILWV 729 (765)
Q Consensus 718 a~~~i~~~~l~v 729 (765)
+.+ ++++.+.+
T Consensus 217 l~~-l~~~~i~i 227 (348)
T 3iix_A 217 LKE-HDFDMVGI 227 (348)
T ss_dssp HHH-HTCSEECC
T ss_pred HHh-cCCCEEee
Confidence 644 45554333
No 139
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=21.57 E-value=5e+02 Score=24.88 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=47.6
Q ss_pred HHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEEE
Q 004263 590 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVIT 669 (765)
Q Consensus 590 ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~is 669 (765)
.++.+.+.|+++||+.+-.. ...+.++.+.+ + +..+...+..- ++-++...+.++|.++
T Consensus 30 ~~~~l~~gGv~~iel~~k~~----------------~~~~~i~~~~~--~-~~~~gag~vl~--~d~~~~A~~~GAd~v~ 88 (207)
T 2yw3_A 30 LARVLEEEGVGALEITLRTE----------------KGLEALKALRK--S-GLLLGAGTVRS--PKEAEAALEAGAAFLV 88 (207)
T ss_dssp HHHHHHHTTCCEEEEECSST----------------HHHHHHHHHTT--S-SCEEEEESCCS--HHHHHHHHHHTCSEEE
T ss_pred HHHHHHHcCCCEEEEeCCCh----------------HHHHHHHHHhC--C-CCEEEeCeEee--HHHHHHHHHcCCCEEE
Confidence 44556788999999984211 12344555544 2 44455555432 4678888889999998
Q ss_pred EecCCCChhhHHHhhhcccCCceeccc
Q 004263 670 IENSRSDEKLLSVFREGVKYRAGIGPG 696 (765)
Q Consensus 670 iE~~r~~~~~L~~~~~~~~~~~~l~~G 696 (765)
... .+.+..+.... ++..+.+|
T Consensus 89 ~~~--~d~~v~~~~~~---~g~~~i~G 110 (207)
T 2yw3_A 89 SPG--LLEEVAALAQA---RGVPYLPG 110 (207)
T ss_dssp ESS--CCHHHHHHHHH---HTCCEEEE
T ss_pred cCC--CCHHHHHHHHH---hCCCEEec
Confidence 652 24455454443 23445556
No 140
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=21.49 E-value=3.5e+02 Score=28.81 Aligned_cols=141 Identities=11% Similarity=0.093 Sum_probs=78.3
Q ss_pred HHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhH---HHHHHHcCCcc
Q 004263 590 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFND---IIHSIMDMDAD 666 (765)
Q Consensus 590 ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~---i~~~l~~l~~D 666 (765)
.++.|.++|++.|.+=-|... +.+ .+.++.+.+.++ ...+... |.++..+ .++.+..++++
T Consensus 39 ia~~L~~~Gv~~IE~g~p~~~---------~~d-----~e~v~~i~~~~~-~~~i~~l-~r~~~~di~~a~~al~~ag~~ 102 (370)
T 3rmj_A 39 VARQLEKLGVDIIEAGFAAAS---------PGD-----FEAVNAIAKTIT-KSTVCSL-SRAIERDIRQAGEAVAPAPKK 102 (370)
T ss_dssp HHHHHHHHTCSEEEEEEGGGC---------HHH-----HHHHHHHHTTCS-SSEEEEE-EESSHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHHcCCCEEEEeCCCCC---------HHH-----HHHHHHHHHhCC-CCeEEEE-ecCCHHHHHHHHHHHhhCCCC
Confidence 344567789999988766542 211 123444444444 3454433 4445443 33444558999
Q ss_pred EEEEecCCCCh-----------hhHHHhhhc----ccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcC
Q 004263 667 VITIENSRSDE-----------KLLSVFREG----VKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNP 731 (765)
Q Consensus 667 ~isiE~~r~~~-----------~~L~~~~~~----~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~vsP 731 (765)
.|++=.+-|+. +.|+.+.+. ..++..+..|.-|.. .-+++.+.+.++.+.+ .|.+.+.+.-
T Consensus 103 ~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~---r~~~~~~~~~~~~~~~-~Ga~~i~l~D 178 (370)
T 3rmj_A 103 RIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDAL---RSEIDFLAEICGAVIE-AGATTINIPD 178 (370)
T ss_dssp EEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGG---GSCHHHHHHHHHHHHH-HTCCEEEEEC
T ss_pred EEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCC---ccCHHHHHHHHHHHHH-cCCCEEEecC
Confidence 98876433321 223222110 113444555554432 4567888887777765 5888998888
Q ss_pred CCCCCCCChhhHHHHHHHHHH
Q 004263 732 DCGLKTRKYSEVKPALSNMVA 752 (765)
Q Consensus 732 dCGL~~~~~~~~~~kL~~mv~ 752 (765)
--|..+ |.++..-++.+.+
T Consensus 179 T~G~~~--P~~~~~lv~~l~~ 197 (370)
T 3rmj_A 179 TVGYSI--PYKTEEFFRELIA 197 (370)
T ss_dssp SSSCCC--HHHHHHHHHHHHH
T ss_pred ccCCcC--HHHHHHHHHHHHH
Confidence 888875 5555555554443
No 141
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A*
Probab=21.46 E-value=2.6e+02 Score=29.72 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=61.6
Q ss_pred ChHHHHHHHHHHHHHHccCCCCcEEEEeccCCCchhhHHHHhc--CCCccEEEEEeccCCCChhhHhhhC-CCCCEEEEE
Q 004263 215 DSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTS--LKGVTGFGFDLIRGTKTLDLIKTEF-PLGKYLFAG 291 (765)
Q Consensus 215 ~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~--l~~vd~l~lD~~~~~~~l~~l~~~~-p~~k~l~lG 291 (765)
.+.+.+.|..... ++.... ..|++|+-.|.-..+.++.|.+ .| ...+.+....+..+++...+.+ ..+-.|+++
T Consensus 164 t~~Q~~~f~aq~~-~A~e~g-lPViiH~r~gr~a~d~l~iL~e~g~~-~~~vvi~H~~~~~~~~~a~~~l~~~G~yI~f~ 240 (363)
T 3ovg_A 164 DRLELKALEVAAR-TSILTG-CPILVHTQLGTMALEVAKHLIGFGAN-PDKIQISHLNKNPDKYYYEKVIKETGVTLCFD 240 (363)
T ss_dssp EHHHHHHHHHHHH-HHHHHC-CCEEEEEETTCSHHHHHHHHHHHTCC-GGGEEEECGGGSCCHHHHHHHHHHHCCEEEEC
T ss_pred CHHHHHHHHHHHH-HHHHhC-CEEEEeCCCCCCHHHHHHHHHhcCCC-CCcEEEEcCCCCCCHHHHHHHHHHCCcEEEEC
Confidence 4455666666544 322222 4588887554211355666654 45 5556555554334443322212 124466665
Q ss_pred EeeCCCCCcCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 004263 292 VVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (765)
Q Consensus 292 vVdgrn~~~ed~~~~~~~l~~~~~~~~~~~l~vspsC~L~ 331 (765)
=+ ++..+..| ++-.+.|+++.+..+.+||.+++||+.+
T Consensus 241 g~-~~~~~~~~-~~ra~~l~~lv~~~p~drILleTDap~~ 278 (363)
T 3ovg_A 241 GP-DRVKYYPD-SLLAENIKYLVDKGLQKHITLSLDAGRI 278 (363)
T ss_dssp CT-TCTTTCCH-HHHHHHHHHHHHTTCGGGEEECCCCCSG
T ss_pred Ce-eccccCCh-hHHHHHHHHHHHhcCCCeEEEeCCCCCC
Confidence 32 11222222 3456678888888888999999999865
No 142
>4dnh_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati YORK structural genomics research consortium; 2.50A {Sinorhizobium meliloti}
Probab=21.34 E-value=1.3e+02 Score=31.56 Aligned_cols=83 Identities=19% Similarity=0.270 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEec---------
Q 004263 579 TCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMC--------- 649 (765)
Q Consensus 579 ~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C--------- 649 (765)
-++++..+|.+.+...+++|.++|-+---+|... ..++++|++ .|..+++.+. ..|++|--
T Consensus 131 ~l~~V~~AY~EQ~~~Ve~~G~~~ILMASRaLA~~----A~~pdDY~~----VY~~vL~q~~--~PVILHWLG~mFDPaL~ 200 (396)
T 4dnh_A 131 SIDDILAAYESQIEAIEAEGGRIILMASRALAAA----AKGPEDYIR----VYDRVLSQVK--EPVIIHWLGEMFDPALE 200 (396)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEECCCHHHHHH----CCSHHHHHH----HHHHHHHHCS--SCEEEEEECTTTCGGGT
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEehhHHHHHH----hCCHHHHHH----HHHHHHHhcC--CCEEEEecccccChhhc
Confidence 4778889999999999999999998877777543 235777654 6667777665 45788854
Q ss_pred --cCC--hh----HHHHHHHc--CCccEEEEe
Q 004263 650 --YSN--FN----DIIHSIMD--MDADVITIE 671 (765)
Q Consensus 650 --~g~--~~----~i~~~l~~--l~~D~isiE 671 (765)
||. +. ..++.|.+ .++|+|-|-
T Consensus 201 GYWGs~d~~~A~~t~l~lI~~~~~kVDGIKiS 232 (396)
T 4dnh_A 201 GYWGNADHMAAMKTCLDVLEAHAAKVDGIKIS 232 (396)
T ss_dssp TTTSCSSHHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred cccCCCCHHHHHHHHHHHHHhChhhcCceEEe
Confidence 332 22 34444433 468888775
No 143
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=21.33 E-value=3.9e+02 Score=26.13 Aligned_cols=90 Identities=11% Similarity=0.211 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccC-CChHHHHHHHHHHHHHHccCCCCcEEEEeccC-------CCchh
Q 004263 179 SLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLD-LDSHKLQAFSDAYSELQSSLSGLNVLIETYFA-------DVPAE 250 (765)
Q Consensus 179 ~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d-~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg-------~~~~~ 250 (765)
+...+.+..+.+.++...+.|+++|.+.-.....+ ..++..+.+.+.++.+.+....+++.+-+..+ +. .+
T Consensus 82 ~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~a~~~gv~l~lEn~~~~~~~~~~~~-~~ 160 (285)
T 1qtw_A 82 EALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKF-EH 160 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEECCCBCTTTSCHHHHHHHHHHHHHHHHHHCSSCEEEEECCCCCTTBCCSSH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEecCCCCCCcccCCH-HH
Confidence 33455666778888888999999998864322222 12344566666666665432346788865532 22 34
Q ss_pred hHHHHhcC---CCccEEEEEecc
Q 004263 251 TYKILTSL---KGVTGFGFDLIR 270 (765)
Q Consensus 251 ~~~~l~~l---~~vd~l~lD~~~ 270 (765)
....+..+ | --++.+|+.+
T Consensus 161 ~~~l~~~v~~~~-~~g~~~D~~H 182 (285)
T 1qtw_A 161 LAAIIDGVEDKS-RVGVCIDTCH 182 (285)
T ss_dssp HHHHHHHCSCGG-GEEEEEEHHH
T ss_pred HHHHHHhhcCcc-ceEEEEEhHh
Confidence 45555555 4 4567777654
No 144
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=20.97 E-value=5e+02 Score=25.10 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEE
Q 004263 589 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 668 (765)
Q Consensus 589 ~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~i 668 (765)
+.++.+.+.|+++||+.+-. .+. .+.++.+.+.++ +..+.-.+... ++-++...+.++|.+
T Consensus 32 ~~~~al~~gGv~~iel~~k~---------~~~-------~~~i~~l~~~~~-~~~vgagtvi~--~d~~~~A~~aGAd~v 92 (214)
T 1wbh_A 32 PMAKALVAGGVRVLNVTLRT---------ECA-------VDAIRAIAKEVP-EAIVGAGTVLN--PQQLAEVTEAGAQFA 92 (214)
T ss_dssp HHHHHHHHTTCCEEEEESCS---------TTH-------HHHHHHHHHHCT-TSEEEEESCCS--HHHHHHHHHHTCSCE
T ss_pred HHHHHHHHcCCCEEEEeCCC---------hhH-------HHHHHHHHHHCc-CCEEeeCEEEE--HHHHHHHHHcCCCEE
Confidence 34556778999999999532 111 224443444444 33344444322 366788888999999
Q ss_pred EEecCCCChhhHHHhhhcccCCceeccc
Q 004263 669 TIENSRSDEKLLSVFREGVKYRAGIGPG 696 (765)
Q Consensus 669 siE~~r~~~~~L~~~~~~~~~~~~l~~G 696 (765)
+... .+.+..+.-.. ++..+.+|
T Consensus 93 ~~p~--~d~~v~~~~~~---~g~~~i~G 115 (214)
T 1wbh_A 93 ISPG--LTEPLLKAATE---GTIPLIPG 115 (214)
T ss_dssp EESS--CCHHHHHHHHH---SSSCEEEE
T ss_pred EcCC--CCHHHHHHHHH---hCCCEEEe
Confidence 8652 24445444433 23444556
No 145
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=20.91 E-value=1.7e+02 Score=30.42 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=34.6
Q ss_pred HHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChh-HHHHHHHcCCccEEEEe
Q 004263 594 LEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMDADVITIE 671 (765)
Q Consensus 594 L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~-~i~~~l~~l~~D~isiE 671 (765)
..++|+++|++|-..+ ++ +..+++ .+ .+ ++.+-.. |+.+ +.+..+.+.++|+|++=
T Consensus 225 Al~aGaD~I~LDn~~~-----------~~-l~~av~---~i----~~--~v~ieaS-GGI~~~~i~~~a~tGVD~isvG 281 (298)
T 3gnn_A 225 ALAHGARSVLLDNFTL-----------DM-MRDAVR---VT----EG--RAVLEVS-GGVNFDTVRAIAETGVDRISIG 281 (298)
T ss_dssp HHHTTCEEEEEESCCH-----------HH-HHHHHH---HH----TT--SEEEEEE-SSCSTTTHHHHHHTTCSEEECG
T ss_pred HHHcCCCEEEECCCCH-----------HH-HHHHHH---Hh----CC--CCeEEEE-cCCCHHHHHHHHHcCCCEEEEC
Confidence 3457999999997432 22 233333 22 11 3334433 6554 46788889999999987
No 146
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=20.85 E-value=6.1e+02 Score=24.99 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=38.2
Q ss_pred HHHHcCCccEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEE
Q 004263 658 HSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWV 729 (765)
Q Consensus 658 ~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~~i~~~~l~v 729 (765)
....++++|.+.+... .+++.++.+.+. +...|+-..-...++.++..+.+.++.+ .|.+-+.+
T Consensus 173 ~~a~~~Gad~i~~~~~-~~~~~l~~i~~~------~~ipvva~GGi~~~~~~~~~~~~~~~~~-~Ga~gv~v 236 (273)
T 2qjg_A 173 RLGAELGADIVKTSYT-GDIDSFRDVVKG------CPAPVVVAGGPKTNTDEEFLQMIKDAME-AGAAGVAV 236 (273)
T ss_dssp HHHHHTTCSEEEECCC-SSHHHHHHHHHH------CSSCEEEECCSCCSSHHHHHHHHHHHHH-HTCSEEEC
T ss_pred HHHHHcCCCEEEECCC-CCHHHHHHHHHh------CCCCEEEEeCCCCCCHHHHHHHHHHHHH-cCCcEEEe
Confidence 5566789999988742 366777766541 1122222222233468888888887765 46655544
No 147
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=20.68 E-value=4.9e+02 Score=27.50 Aligned_cols=89 Identities=16% Similarity=0.127 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEecccc-------cccCCCCCC----CCH---HHHHHHHHHHHHHHHccCCCCceEE
Q 004263 580 CYQIALAIKDEVEDLEKAGITVIQIDEAA-------LREGLPLRK----SEQ---DFYLKWAVHSFRITNCGVQDTTQVH 645 (765)
Q Consensus 580 ~~~la~al~~ev~~L~~aG~~~IQiDEPa-------L~~~l~l~~----~~~---~~~l~~~v~a~~~~~~~v~~~~~I~ 645 (765)
++++...+.+-.+...++|.+.|+|.--. |+.....|. -+. ..++-..+++.+.++ +++ .|.
T Consensus 148 I~~ii~~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~v---g~~-~v~ 223 (362)
T 4ab4_A 148 INDIVEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVW---GAQ-RVG 223 (362)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHH---CGG-GEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhc---CCC-ceE
Confidence 45566667777777788999999999643 222111221 112 233344455555544 333 455
Q ss_pred EEeccCC-------------hhHHHHHHHcCCccEEEEec
Q 004263 646 THMCYSN-------------FNDIIHSIMDMDADVITIEN 672 (765)
Q Consensus 646 ~H~C~g~-------------~~~i~~~l~~l~~D~isiE~ 672 (765)
+-+.-.+ +..+...|.+.++|.|++-.
T Consensus 224 vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~ 263 (362)
T 4ab4_A 224 VHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSRE 263 (362)
T ss_dssp EEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred EEeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECC
Confidence 5554221 22456777889999999863
No 148
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=20.57 E-value=2e+02 Score=27.83 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEE
Q 004263 589 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 668 (765)
Q Consensus 589 ~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~i 668 (765)
+.++.+.++|++.|++.++.... ..... ..+.++.+.+.+ +..+.+|....+..+ ++.+.++++|.+
T Consensus 37 ~~a~~~~~~G~d~i~v~~~~~~~------~~~~~----~~~~i~~i~~~~--~ipvi~~g~i~~~~~-~~~~~~~Gad~V 103 (253)
T 1h5y_A 37 EMAVRYEEEGADEIAILDITAAP------EGRAT----FIDSVKRVAEAV--SIPVLVGGGVRSLED-ATTLFRAGADKV 103 (253)
T ss_dssp HHHHHHHHTTCSCEEEEECCCCT------TTHHH----HHHHHHHHHHHC--SSCEEEESSCCSHHH-HHHHHHHTCSEE
T ss_pred HHHHHHHHcCCCEEEEEeCCccc------cCCcc----cHHHHHHHHHhc--CCCEEEECCCCCHHH-HHHHHHcCCCEE
Confidence 34556778999999998754321 11111 122333333333 245667755455544 467777899999
Q ss_pred EEe
Q 004263 669 TIE 671 (765)
Q Consensus 669 siE 671 (765)
.+-
T Consensus 104 ~i~ 106 (253)
T 1h5y_A 104 SVN 106 (253)
T ss_dssp EES
T ss_pred EEC
Confidence 986
Done!