Query 004266
Match_columns 765
No_of_seqs 882 out of 4506
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 19:39:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004266.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004266hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oy3_D Transcription factor in 100.0 1.7E-34 5.6E-39 299.6 20.5 225 5-289 2-271 (282)
2 1yyh_A HN1;, notch 1, ankyrin 100.0 5.1E-35 1.8E-39 302.4 16.2 213 5-291 3-238 (253)
3 3b7b_A Euchromatic histone-lys 100.0 5.3E-34 1.8E-38 289.6 22.8 210 6-289 5-223 (237)
4 2xai_A ASB-9, ankyrin repeat a 100.0 6.8E-34 2.3E-38 295.7 22.3 201 11-287 2-210 (261)
5 1k1a_A B-cell lymphoma 3-encod 100.0 4.2E-34 1.4E-38 290.2 20.1 217 6-295 3-235 (241)
6 3d9h_A CDNA FLJ77766, highly s 100.0 5.4E-33 1.8E-37 293.5 23.7 205 6-286 53-265 (285)
7 4b93_B Ankyrin repeat domain-c 100.0 9.5E-34 3.2E-38 298.3 17.8 208 8-288 7-230 (269)
8 2dzn_A Probable 26S proteasome 100.0 1.3E-32 4.6E-37 277.2 22.2 204 12-287 2-219 (228)
9 3utm_A Tankyrase-1; tankyrase, 100.0 2.5E-32 8.4E-37 291.3 22.9 219 5-284 51-321 (351)
10 1wdy_A 2-5A-dependent ribonucl 100.0 7.9E-33 2.7E-37 285.9 18.5 241 10-291 3-268 (285)
11 3ljn_A Hypothetical protein; a 100.0 2.2E-33 7.4E-38 304.8 13.9 224 5-292 13-260 (364)
12 1n11_A Ankyrin; clathrin, BAND 100.0 3.7E-33 1.3E-37 310.0 15.8 195 88-291 140-359 (437)
13 3aji_A 26S proteasome non-ATPa 100.0 2E-32 7E-37 276.8 19.1 209 9-291 3-220 (231)
14 1n11_A Ankyrin; clathrin, BAND 100.0 2.1E-32 7.3E-37 303.9 18.7 254 5-291 106-392 (437)
15 2fo1_E LIN-12 protein; beta-ba 100.0 3.6E-32 1.2E-36 298.2 17.2 212 6-291 118-361 (373)
16 1s70_B 130 kDa myosin-binding 100.0 3.3E-32 1.1E-36 286.0 16.0 204 10-285 38-274 (299)
17 2xai_A ASB-9, ankyrin repeat a 100.0 1.4E-31 4.7E-36 278.2 16.8 213 4-286 28-248 (261)
18 2f8y_A Notch homolog 1, transl 100.0 1.3E-31 4.4E-36 269.5 15.9 190 7-242 20-218 (223)
19 3utm_A Tankyrase-1; tankyrase, 100.0 1.1E-31 3.7E-36 286.2 16.2 216 6-291 18-295 (351)
20 1ikn_D Protein (I-kappa-B-alph 100.0 1.7E-31 5.8E-36 272.1 16.5 219 6-290 2-233 (236)
21 4g8k_A 2-5A-dependent ribonucl 100.0 1E-31 3.4E-36 288.6 14.3 250 10-299 23-296 (337)
22 2f8y_A Notch homolog 1, transl 100.0 2.3E-30 7.8E-35 260.3 23.2 188 20-253 7-196 (223)
23 1oy3_D Transcription factor in 100.0 1.3E-31 4.6E-36 277.7 13.6 191 30-292 2-241 (282)
24 3aji_A 26S proteasome non-ATPa 100.0 2.1E-30 7.1E-35 262.1 18.8 191 5-241 33-231 (231)
25 4b93_B Ankyrin repeat domain-c 100.0 4E-31 1.4E-35 278.2 14.0 192 6-242 46-246 (269)
26 3eu9_A Huntingtin-interacting 100.0 1.5E-30 5.1E-35 262.5 17.5 213 7-291 4-225 (240)
27 2rfa_A Transient receptor pote 100.0 7.5E-31 2.6E-35 265.9 15.0 198 38-292 2-213 (232)
28 3d9h_A CDNA FLJ77766, highly s 100.0 6.7E-31 2.3E-35 277.4 15.3 207 10-292 13-238 (285)
29 2fo1_E LIN-12 protein; beta-ba 100.0 2.2E-31 7.6E-36 291.9 11.8 225 4-293 86-330 (373)
30 3ljn_A Hypothetical protein; a 100.0 5.4E-31 1.8E-35 285.9 14.7 226 4-291 45-304 (364)
31 1wdy_A 2-5A-dependent ribonucl 100.0 1.5E-29 5E-34 261.4 23.5 195 5-245 65-283 (285)
32 1yyh_A HN1;, notch 1, ankyrin 100.0 4.6E-30 1.6E-34 265.3 19.6 187 6-238 51-246 (253)
33 1ikn_D Protein (I-kappa-B-alph 100.0 2.3E-30 7.9E-35 263.7 14.9 192 31-292 2-200 (236)
34 2rfa_A Transient receptor pote 100.0 6.8E-30 2.3E-34 258.8 17.8 201 11-242 2-224 (232)
35 3b7b_A Euchromatic histone-lys 100.0 4.5E-30 1.5E-34 260.6 15.7 191 28-291 2-192 (237)
36 1k1a_A B-cell lymphoma 3-encod 100.0 6E-30 2E-34 259.5 16.1 190 4-239 38-240 (241)
37 4gpm_A Engineered protein OR26 100.0 7.6E-30 2.6E-34 250.8 16.0 147 96-292 6-152 (169)
38 4gpm_A Engineered protein OR26 100.0 1.7E-29 5.8E-34 248.4 18.5 158 41-242 6-163 (169)
39 4g8k_A 2-5A-dependent ribonucl 100.0 1E-29 3.4E-34 273.0 17.5 251 5-292 51-317 (337)
40 2etb_A Transient receptor pote 100.0 8.8E-30 3E-34 262.6 14.7 201 12-242 2-248 (256)
41 3hra_A Ankyrin repeat family p 100.0 2.3E-29 7.9E-34 248.9 16.7 187 38-291 4-193 (201)
42 3kea_A K1L; tropism, ANK repea 100.0 1.2E-29 4.1E-34 268.1 13.9 192 5-245 24-225 (285)
43 2etb_A Transient receptor pote 100.0 3.7E-30 1.3E-34 265.4 9.5 207 38-292 1-237 (256)
44 2pnn_A Transient receptor pote 100.0 6.1E-30 2.1E-34 266.6 8.3 216 26-291 2-248 (273)
45 3kea_A K1L; tropism, ANK repea 100.0 7.1E-30 2.4E-34 269.8 8.7 202 19-299 15-218 (285)
46 2dzn_A Probable 26S proteasome 100.0 1E-28 3.5E-33 248.8 16.7 182 39-291 2-189 (228)
47 1sw6_A Regulatory protein SWI6 100.0 1.4E-29 4.6E-34 273.1 10.8 155 82-287 120-327 (327)
48 3hra_A Ankyrin repeat family p 100.0 4.6E-28 1.6E-32 239.6 20.8 186 10-238 3-201 (201)
49 2pnn_A Transient receptor pote 100.0 1.5E-28 5.2E-33 256.0 16.3 212 4-242 5-261 (273)
50 2vge_A RELA-associated inhibit 100.0 5.4E-29 1.8E-33 255.7 12.5 183 88-292 15-204 (229)
51 3jxi_A Vanilloid receptor-rela 100.0 2.7E-28 9.1E-33 251.7 14.2 209 9-242 2-252 (260)
52 2rfm_A Putative ankyrin repeat 100.0 2.5E-28 8.4E-33 241.2 12.4 154 88-291 29-182 (192)
53 3eu9_A Huntingtin-interacting 99.9 3.1E-27 1.1E-31 238.2 19.3 193 5-242 35-237 (240)
54 3jxi_A Vanilloid receptor-rela 99.9 1.1E-28 3.8E-33 254.6 8.7 210 38-291 4-240 (260)
55 2rfm_A Putative ankyrin repeat 99.9 2.2E-27 7.6E-32 234.3 16.6 164 29-238 27-190 (192)
56 2y1l_E Darpin-8.4; hydrolase-i 99.9 2E-27 6.8E-32 230.5 15.3 152 90-291 10-161 (169)
57 3v31_A Ankyrin repeat family A 99.9 1.1E-27 3.6E-32 231.1 12.9 149 93-291 2-150 (167)
58 1ycs_B 53BP2, P53BP2; ankyrin 99.9 9.9E-28 3.4E-32 246.5 13.5 188 38-289 4-194 (239)
59 3v30_A DNA-binding protein rfx 99.9 1.7E-27 5.9E-32 230.7 13.4 168 39-250 2-170 (172)
60 1awc_B Protein (GA binding pro 99.9 2.1E-27 7.3E-32 226.3 13.6 147 94-291 2-148 (153)
61 3twr_A Tankyrase-2; ankyrin re 99.9 4.7E-27 1.6E-31 226.1 15.1 152 89-291 3-155 (165)
62 1s70_B 130 kDa myosin-binding 99.9 2E-27 6.7E-32 249.6 13.2 200 5-238 66-287 (299)
63 1ihb_A P18-INK4C(INK6), cyclin 99.9 3.2E-27 1.1E-31 225.9 11.6 149 92-291 3-152 (162)
64 3v30_A DNA-binding protein rfx 99.9 5.7E-27 1.9E-31 227.0 13.1 148 94-291 2-150 (172)
65 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.2E-26 4.2E-31 221.8 15.0 158 38-240 4-162 (162)
66 3v31_A Ankyrin repeat family A 99.9 1.2E-26 4.2E-31 223.6 14.8 161 38-242 2-162 (167)
67 3f6q_A Integrin-linked protein 99.9 1.7E-26 5.7E-31 225.8 15.5 150 92-291 3-153 (179)
68 4hbd_A KN motif and ankyrin re 99.9 1.1E-27 3.7E-32 252.2 7.1 154 88-291 105-265 (276)
69 2y1l_E Darpin-8.4; hydrolase-i 99.9 5.3E-26 1.8E-30 220.5 17.3 157 38-238 13-169 (169)
70 4hbd_A KN motif and ankyrin re 99.9 4.9E-27 1.7E-31 247.2 10.7 172 21-238 93-273 (276)
71 3f6q_A Integrin-linked protein 99.9 2.8E-26 9.4E-31 224.3 15.2 164 38-245 4-168 (179)
72 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.9E-26 1E-30 218.2 12.8 146 94-291 2-148 (156)
73 1bi7_B P16INK4A, MTS1, multipl 99.9 1.6E-26 5.5E-31 221.5 9.6 131 89-242 7-138 (156)
74 1sw6_A Regulatory protein SWI6 99.9 2.6E-26 8.7E-31 247.5 11.8 168 5-221 123-326 (327)
75 3twr_A Tankyrase-2; ankyrin re 99.9 5.7E-26 2E-30 218.5 12.9 129 88-239 36-164 (165)
76 1awc_B Protein (GA binding pro 99.9 2.3E-25 8E-30 212.1 16.1 151 39-234 2-152 (153)
77 1d9s_A Cyclin-dependent kinase 99.9 5.2E-26 1.8E-30 213.0 11.3 130 88-240 6-136 (136)
78 1bd8_A P19INK4D CDK4/6 inhibit 99.9 5.3E-25 1.8E-29 209.4 14.7 154 39-237 2-155 (156)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.7E-25 5.7E-30 229.9 10.8 150 92-292 3-155 (239)
80 2jab_A H10-2-G3; HER2, darpin, 99.9 1.4E-24 4.9E-29 203.1 14.9 127 90-238 10-136 (136)
81 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.9E-24 6.4E-29 196.6 15.2 126 93-240 1-126 (126)
82 3t8k_A Uncharacterized protein 99.9 3.3E-25 1.1E-29 220.9 8.1 154 94-291 6-169 (186)
83 3c5r_A BARD-1, BRCA1-associate 99.9 2.3E-24 7.8E-29 201.5 9.1 129 89-239 5-133 (137)
84 2vge_A RELA-associated inhibit 99.9 4E-25 1.4E-29 226.8 1.6 187 20-252 1-192 (229)
85 3t8k_A Uncharacterized protein 99.9 8.1E-25 2.8E-29 218.1 2.8 133 92-243 36-182 (186)
86 3ehr_A Osteoclast-stimulating 99.9 8.8E-24 3E-28 213.5 9.3 139 89-248 68-206 (222)
87 3aaa_C Myotrophin, protein V-1 99.9 2.9E-23 9.9E-28 190.6 11.7 113 91-221 4-116 (123)
88 3c5r_A BARD-1, BRCA1-associate 99.9 6.7E-23 2.3E-27 191.4 12.9 118 137-291 7-124 (137)
89 2b0o_E UPLC1; arfgap, structur 99.9 4.8E-23 1.6E-27 220.4 13.2 148 91-288 148-298 (301)
90 1d9s_A Cyclin-dependent kinase 99.9 3.1E-23 1.1E-27 194.0 9.9 134 27-203 2-136 (136)
91 1bi7_B P16INK4A, MTS1, multipl 99.9 1.9E-23 6.5E-28 200.0 8.6 145 31-218 6-151 (156)
92 3deo_A Signal recognition part 99.9 3.1E-22 1.1E-26 196.8 11.1 115 91-223 41-155 (183)
93 3aaa_C Myotrophin, protein V-1 99.9 3.8E-22 1.3E-26 183.1 10.8 113 137-286 4-116 (123)
94 2jab_A H10-2-G3; HER2, darpin, 99.9 3.1E-22 1.1E-26 187.1 8.9 118 137-291 11-128 (136)
95 3ui2_A Signal recognition part 99.9 8.8E-22 3E-26 203.3 11.3 134 91-242 42-187 (244)
96 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5.8E-21 2E-25 173.4 14.0 126 38-203 1-126 (126)
97 3jue_A Arfgap with coiled-coil 99.8 2.1E-21 7.2E-26 213.9 13.2 153 89-288 194-349 (368)
98 2aja_A Ankyrin repeat family p 99.8 2.1E-23 7.3E-28 230.4 -2.8 211 38-295 91-338 (376)
99 3lvq_E ARF-GAP with SH3 domain 99.8 5E-21 1.7E-25 218.3 15.8 135 93-243 131-268 (497)
100 1dcq_A PYK2-associated protein 99.8 1.2E-20 4.2E-25 199.4 16.1 134 93-242 129-265 (278)
101 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.3E-20 4.5E-25 164.7 12.3 93 139-240 1-93 (93)
102 3ehr_A Osteoclast-stimulating 99.8 2.2E-21 7.4E-26 196.0 6.7 124 137-297 70-194 (222)
103 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2.8E-20 9.6E-25 162.6 12.1 93 93-203 1-93 (93)
104 2l6b_A NR1C; ankyrin, consensu 99.8 6.1E-21 2.1E-25 172.7 7.7 109 89-215 4-112 (115)
105 3deo_A Signal recognition part 99.8 3.5E-21 1.2E-25 189.4 6.3 120 135-292 39-159 (183)
106 2b0o_E UPLC1; arfgap, structur 99.8 1.2E-20 4.3E-25 201.7 9.8 124 76-223 168-298 (301)
107 2l6b_A NR1C; ankyrin, consensu 99.8 2E-20 6.9E-25 169.3 7.6 105 136-249 5-109 (115)
108 3ui2_A Signal recognition part 99.8 3.1E-20 1.1E-24 191.7 8.0 97 137-243 42-139 (244)
109 2aja_A Ankyrin repeat family p 99.8 4.2E-21 1.4E-25 212.1 -1.1 129 91-239 89-223 (376)
110 3jue_A Arfgap with coiled-coil 99.8 4.6E-19 1.6E-23 195.2 11.9 164 38-242 198-366 (368)
111 3lvq_E ARF-GAP with SH3 domain 99.8 9.9E-19 3.4E-23 199.3 13.7 139 38-220 131-276 (497)
112 1dcq_A PYK2-associated protein 99.8 1E-18 3.4E-23 184.7 9.1 167 89-292 61-254 (278)
113 2zgd_A 3 repeat synthetic anky 99.7 1.8E-17 6.2E-22 149.7 9.8 91 135-234 19-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 5.5E-17 1.9E-21 146.5 10.5 91 89-197 19-109 (110)
115 1m9o_A Tristetraproline; Cys3H 99.0 8.5E-11 2.9E-15 100.4 3.1 61 346-407 8-76 (77)
116 3d2q_A Muscleblind-like protei 98.6 3E-09 1E-13 89.3 -0.2 62 349-410 5-69 (70)
117 2cqe_A KIAA1064 protein; CCCH 98.2 1.3E-06 4.4E-11 78.0 4.8 50 346-407 9-62 (98)
118 2e5s_A Otthump00000018578; ZF- 98.1 1.9E-07 6.4E-12 83.4 -1.9 62 349-410 19-83 (98)
119 2d9n_A Cleavage and polyadenyl 98.1 1.3E-06 4.6E-11 74.5 3.4 59 344-409 4-65 (77)
120 2rhk_C Cleavage and polyadenyl 97.9 2.8E-06 9.4E-11 71.6 1.3 57 346-409 12-71 (72)
121 2d9m_A Zinc finger CCCH-type d 97.9 1.4E-06 4.8E-11 71.9 -0.6 40 351-390 21-63 (69)
122 1m9o_A Tristetraproline; Cys3H 97.8 9.5E-06 3.2E-10 68.9 3.1 62 313-375 10-76 (77)
123 3d2n_A Muscleblind-like protei 97.3 4.3E-05 1.5E-09 66.0 1.0 61 349-411 8-71 (83)
124 2d9m_A Zinc finger CCCH-type d 97.1 5.6E-05 1.9E-09 62.4 -0.3 30 382-411 17-49 (69)
125 2rpp_A Muscleblind-like protei 96.9 0.00012 4.1E-09 64.0 -0.3 59 350-410 17-78 (89)
126 2cqe_A KIAA1064 protein; CCCH 96.1 0.0038 1.3E-07 55.5 3.7 39 321-374 22-61 (98)
127 2d9n_A Cleavage and polyadenyl 96.0 0.0042 1.4E-07 52.7 3.5 54 320-391 18-72 (77)
128 3d2q_A Muscleblind-like protei 95.0 0.0093 3.2E-07 49.6 2.1 52 321-376 15-67 (70)
129 2lhn_A Nuclear polyadenylated 92.3 0.016 5.4E-07 49.4 0.0 63 317-406 11-73 (80)
130 2e5s_A Otthump00000018578; ZF- 93.0 0.018 6.1E-07 51.1 -0.0 52 321-376 29-81 (98)
131 2lhn_A Nuclear polyadenylated 91.6 0.024 8.1E-07 48.4 0.0 42 350-404 9-50 (80)
132 2rhk_C Cleavage and polyadenyl 92.2 0.053 1.8E-06 45.3 1.9 45 320-375 24-69 (72)
133 3d2n_A Muscleblind-like protei 90.5 0.05 1.7E-06 46.7 0.1 48 321-374 18-66 (83)
134 2rpp_A Muscleblind-like protei 89.5 0.067 2.3E-06 46.6 0.0 60 321-393 26-86 (89)
135 3u1l_A PRE-mRNA-splicing facto 66.3 1.3 4.5E-05 45.3 0.3 24 350-373 70-93 (240)
136 2fc6_A Nuclear, target of EGR1 62.7 2.6 9E-05 32.3 1.2 24 383-406 18-45 (50)
137 2fc6_A Nuclear, target of EGR1 55.3 3.8 0.00013 31.4 1.0 27 348-374 18-45 (50)
138 3u9g_A Zinc finger CCCH-type a 41.7 15 0.00053 36.9 3.3 45 347-407 148-199 (229)
139 3v33_A Ribonuclease ZC3H12A; r 40.1 7.1 0.00024 39.4 0.5 32 339-372 181-212 (223)
140 4g26_A Pentatricopeptide repea 38.6 19 0.00064 40.4 3.8 26 98-123 33-62 (501)
141 4g26_A Pentatricopeptide repea 37.9 23 0.00079 39.7 4.4 131 91-242 60-209 (501)
142 3v33_A Ribonuclease ZC3H12A; r 25.7 15 0.0005 37.1 0.0 23 384-406 191-214 (223)
No 1
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.7e-34 Score=299.59 Aligned_cols=225 Identities=15% Similarity=0.049 Sum_probs=174.7
Q ss_pred CcccCCCCCcHHHHH--------HHHHHHCCCC---cccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCC
Q 004266 5 PAVTMRNKSSPLKIS--------ISIFQKHTQN---VFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPP 73 (765)
Q Consensus 5 p~vt~~ng~TPLH~A--------V~lLl~~gAd---Vn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~ 73 (765)
-+..+.+|+||||+| +++|+++|++ ++..|. .|+||||+|+. .+.+.+.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~--~g~t~L~~A~~-~g~~~~v----------------- 61 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND--LGQTALHLAAI-LGEASTV----------------- 61 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCT--TSCCHHHHHHH-HTCHHHH-----------------
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCC--CCCCHHHHHHH-cCCHHHH-----------------
Confidence 467889999999995 5689999998 889999 99999999954 4433332
Q ss_pred ChhHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccc-------------------hhhhhh----
Q 004266 74 SKPSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVG-------------------LWYSFQ---- 130 (765)
Q Consensus 74 ~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~-------------------L~~a~~---- 130 (765)
..|++.+.++ +..+..|.||||+|+..|+.+++++|++.|++.+... ++++..
T Consensus 62 --~~Ll~~ga~~--~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (282)
T 1oy3_D 62 --EKLYAAGAGV--LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE 137 (282)
T ss_dssp --HHHHHTTCCS--SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------
T ss_pred --HHHHHcCCCC--CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccc
Confidence 5677777777 7889999999999999999999999999887643211 000000
Q ss_pred -----------chhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHH
Q 004266 131 -----------RLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLF 199 (765)
Q Consensus 131 -----------~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~ 199 (765)
......+..|.||||+|+..|+.++|++||++ |+++|...+..|.||||+|+..|+ .++|++||+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~~---~~~v~~Ll~ 213 (282)
T 1oy3_D 138 NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQA---ASVLELLLK 213 (282)
T ss_dssp ------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTC---HHHHHHHHH
T ss_pred hhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcCHHHHHHHcCC---HHHHHHHHH
Confidence 01122367899999999999999999999999 999999933459999999999999 999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCcc
Q 004266 200 AGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVH 279 (765)
Q Consensus 200 ~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TP 279 (765)
+|+|++.+|..|+||||+|+.. +..+++++|+++|++++ .+|..|.||
T Consensus 214 ~gad~~~~d~~g~tpL~~A~~~----~~~~~v~~Ll~~ga~~~----------------------------~~~~~g~tp 261 (282)
T 1oy3_D 214 AGADPTARMYGGRTPLGSALLR----PNPILARLLRAHGAPEP----------------------------EDGGDKLSP 261 (282)
T ss_dssp TTCCTTCCCTTSCCHHHHHHTS----SCHHHHHHHHHTTCCCC----------------------------CCC------
T ss_pred cCCCCcccccCCCCHHHHHHHc----CCcHHHHHHHHcCCCcC----------------------------cCCCccccc
Confidence 9999999999999999999999 56779999999999999 789999999
Q ss_pred ccccccCCCc
Q 004266 280 AFVAPEKKEY 289 (765)
Q Consensus 280 LHlAaekk~y 289 (765)
|++|....+-
T Consensus 262 l~~a~~~~~~ 271 (282)
T 1oy3_D 262 CSSSGSDSDS 271 (282)
T ss_dssp ----------
T ss_pred ccccCCcccc
Confidence 9999765543
No 2
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=5.1e-35 Score=302.40 Aligned_cols=213 Identities=20% Similarity=0.180 Sum_probs=168.4
Q ss_pred CcccCCCCCcHHHHHH---------------------HHHHHCCCCcccc-cCCCCCCcHHHHHHHhcCceeccCccccc
Q 004266 5 PAVTMRNKSSPLKISI---------------------SIFQKHTQNVFLV-DFAINDRTLLILLFFQNYLIMCGGSEKLS 62 (765)
Q Consensus 5 p~vt~~ng~TPLH~AV---------------------~lLl~~gAdVn~~-D~~~~G~TPLhlA~~~~~~i~c~~~e~lk 62 (765)
.++++.+|.||||+|+ ++|+++|++++.. |. .|+||||+|+. .+.+.+.
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~--~g~t~L~~A~~-~g~~~~v------ 73 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDR--TGETALHLAAR-YSRSDAA------ 73 (253)
T ss_dssp -------------------------------------------------CCCT--TSCCHHHHHHH-TTCHHHH------
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCC--CCCcHHHHHHH-cCCHHHH------
Confidence 4678899999999975 3588899998664 78 99999999944 4433222
Q ss_pred cccCCCCCCCCChhHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCC-CCcccchhhhhhchhhhccCCCC
Q 004266 63 SKALAPSASPPSKPSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTS-AICEVGLWYSFQRLSKKIVLQHR 141 (765)
Q Consensus 63 l~~~~t~s~~~~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~ga-dvn~~~L~~a~~~g~~~id~~G~ 141 (765)
..|++.+.++ +..+..|.||||+|+..|+.+++++|++.+. +++.. +..|.
T Consensus 74 -------------~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-------------~~~g~ 125 (253)
T 1yyh_A 74 -------------KRLLEASADA--NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR-------------MHDGT 125 (253)
T ss_dssp -------------HHHHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCC-------------CTTCC
T ss_pred -------------HHHHHcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccc-------------CCCCC
Confidence 5667667777 7789999999999999999999999999776 88888 88999
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhC
Q 004266 142 TPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVH 221 (765)
Q Consensus 142 TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~ 221 (765)
||||+|+..|+.++|++||++ |+++|.+ +..|.||||+|+..|+ .++|++||++|++++.+|..|+||||+|+..
T Consensus 126 t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~ 200 (253)
T 1yyh_A 126 TPLILAARLAVEGMLEDLINS-HADVNAV-DDLGKSALHWAAAVNN---VDAAVVLLKNGANKDMQNNREETPLFLAARE 200 (253)
T ss_dssp CHHHHHHHHTCSSHHHHHHHT-TCCTTCB-CTTSCBHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred cHHHHHHHcChHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHC
Confidence 999999999999999999999 9999999 9999999999999999 9999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 222 PNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 222 g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
+..+++++|+++|++++ .+|..|.||||+|+++++..+
T Consensus 201 ----~~~~~v~~Ll~~ga~~~----------------------------~~d~~g~tpl~~A~~~g~~~i 238 (253)
T 1yyh_A 201 ----GSYETAKVLLDHFANRD----------------------------ITDHMDRLPRDIAQERMHHDI 238 (253)
T ss_dssp ----TCHHHHHHHHHTTCCTT----------------------------CCCTTCCCHHHHHHHTTCHHH
T ss_pred ----CCHHHHHHHHHcCCCcc----------------------------ccccCCCCHHHHHHHcCCHHH
Confidence 55779999999999999 789999999999999999877
No 3
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=5.3e-34 Score=289.58 Aligned_cols=210 Identities=23% Similarity=0.248 Sum_probs=189.9
Q ss_pred cccCCCCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhH
Q 004266 6 AVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPS 77 (765)
Q Consensus 6 ~vt~~ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~ 77 (765)
+.++.+|.||||+| +++|+++|++++..|. .|+||||+|+. .+.+.+. ..
T Consensus 5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~-~~~~~~v-------------------~~ 62 (237)
T 3b7b_A 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE--DQRTPLMEAAE-NNHLEAV-------------------KY 62 (237)
T ss_dssp CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT--TCCCHHHHHHH-TTCHHHH-------------------HH
T ss_pred ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCC--CCCCHHHHHHH-hCCHHHH-------------------HH
Confidence 56788999999995 5689999999999999 99999999944 4433222 45
Q ss_pred HHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCC-CCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHH
Q 004266 78 LQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDT-SAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVV 156 (765)
Q Consensus 78 Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~g-advn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evV 156 (765)
|++.+..+ +..+..|.||||+|+..|+.+++++|++.| .+++.. +..|.||||+|+..|+.+++
T Consensus 63 Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~~ 127 (237)
T 3b7b_A 63 LIKAGALV--DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ-------------DDGGWTPMIWATEYKHVDLV 127 (237)
T ss_dssp HHTTTCCC--CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCC-------------CTTSCCHHHHHHHTTCHHHH
T ss_pred HHhCCCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccC-------------CCCCCCHHHHHHHcCCHHHH
Confidence 66666666 678899999999999999999999999987 889888 78999999999999999999
Q ss_pred HHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHH
Q 004266 157 KLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLK 236 (765)
Q Consensus 157 k~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~ 236 (765)
++|+++ |++++.+ +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+.. +..+++++|++
T Consensus 128 ~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~ 198 (237)
T 3b7b_A 128 KLLLSK-GSDINIR-DNEENICLHWAAFSGC---VDIAEILLAAKCDLHAVNIHGDSPLHIAARE----NRYDCVVLFLS 198 (237)
T ss_dssp HHHHHT-TCCTTCC-CTTSCCHHHHHHHHCC---HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHT----TCHHHHHHHHT
T ss_pred HHHHHC-CCCCCcc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHh----CCHhHHHHHHH
Confidence 999999 9999999 9999999999999999 9999999999999999999999999999999 56779999999
Q ss_pred CCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCc
Q 004266 237 NGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEY 289 (765)
Q Consensus 237 ~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~y 289 (765)
+|++++ .+|++|.||||+|+.+++.
T Consensus 199 ~gad~~----------------------------~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 199 RDSDVT----------------------------LKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp TTCCTT----------------------------CCCTTSCCHHHHSCTTCHH
T ss_pred cCCCCC----------------------------ccCCCCCCHHHHHHHHHHH
Confidence 999999 7899999999999998864
No 4
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=6.8e-34 Score=295.68 Aligned_cols=201 Identities=14% Similarity=0.135 Sum_probs=177.8
Q ss_pred CCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhcc
Q 004266 11 NKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNM 82 (765)
Q Consensus 11 ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~ 82 (765)
+|+||||+| +++|+++|+++|..|. +|+||||+|+. .+...+. ..|++.+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~-~g~~~~v-------------------~~Ll~~g 59 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA--DHVSPLHEACL-GGHLSCV-------------------KILLKHG 59 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT--TCCCHHHHHHH-HTCHHHH-------------------HHHHHTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC--CCCCHHHHHHH-cCCHHHH-------------------HHHHHCC
Confidence 689999995 5689999999999999 99999999954 4433232 5667677
Q ss_pred CCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhc
Q 004266 83 SNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSL 162 (765)
Q Consensus 83 ~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~ 162 (765)
.++ +..|.+|.||||+|+..|+.++|++|++.|++++.. .+|.||||+|+..|+.++|++|+++
T Consensus 60 ~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--------------~~g~t~L~~A~~~~~~~~v~~Ll~~ 123 (261)
T 2xai_A 60 AQV--NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE--------------SDLASPIHEAARRGHVECVNSLIAY 123 (261)
T ss_dssp CCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCS--------------CTTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC--------------CCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 777 788999999999999999999999999999999864 5699999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCC
Q 004266 163 TKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVS 242 (765)
Q Consensus 163 ~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn 242 (765)
|+++|.+ +..|.||||+|+..|+ .+++++|+++|+++|. |..|+||||+|+.. +..+++++|+++|++++
T Consensus 124 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~----~~~~~v~~Ll~~gad~~ 193 (261)
T 2xai_A 124 -GGNIDHK-ISHLGTPLYLACENQQ---RACVKKLLESGADVNQ-GKGQDSPLHAVART----ASEELACLLMDFGADTQ 193 (261)
T ss_dssp -TCCTTCC-BTTTBCHHHHHHHTTC---HHHHHHHHHHTCCTTC-CBTTBCHHHHHHHH----TCHHHHHHHHHTTCCTT
T ss_pred -CCCCCcC-CCCCCCHHHHHHHhCC---HHHHHHHHHcCCCCCC-CCCCCChHHHHHHc----CCHHHHHHHHHcCCCCC
Confidence 9999999 9999999999999999 9999999999999995 89999999999999 56779999999999999
Q ss_pred CcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCC
Q 004266 243 FDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKK 287 (765)
Q Consensus 243 ~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk 287 (765)
.+|++|+||||+|++++
T Consensus 194 ----------------------------~~d~~g~tpl~~A~~~~ 210 (261)
T 2xai_A 194 ----------------------------AKNAEGKRPVELVPPES 210 (261)
T ss_dssp ----------------------------CCCTTSCCGGGGSCTTC
T ss_pred ----------------------------CcCCCCCChhhhccccc
Confidence 67777888888887544
No 5
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=4.2e-34 Score=290.18 Aligned_cols=217 Identities=18% Similarity=0.148 Sum_probs=187.6
Q ss_pred cccCCCCCcHHHHHH--------HHHHH----CCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCC
Q 004266 6 AVTMRNKSSPLKISI--------SIFQK----HTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPP 73 (765)
Q Consensus 6 ~vt~~ng~TPLH~AV--------~lLl~----~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~ 73 (765)
+.++.+|.||||+|+ +.|++ .+++++..|. .|+||||+|+. .+.+.+.
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~--~g~t~L~~A~~-~~~~~~v----------------- 62 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN--LRQTPLHLAVI-TTLPSVV----------------- 62 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT--TSCCHHHHHHH-TTCHHHH-----------------
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccc--cCCCHHHHHHH-cCCHHHH-----------------
Confidence 457889999999964 45554 8999999999 99999999944 4433222
Q ss_pred ChhHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCC----CCcccchhhhhhchhhhccCCCChHHHHHHH
Q 004266 74 SKPSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTS----AICEVGLWYSFQRLSKKIVLQHRTPLMVAAE 149 (765)
Q Consensus 74 ~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~ga----dvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~ 149 (765)
..|++.+.++ +..+..|.||||+|+..|+.+++++|++.+. +++.. +..|.||||+|+.
T Consensus 63 --~~Ll~~g~~~--~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-------------~~~g~t~L~~A~~ 125 (241)
T 1k1a_A 63 --RLLVTAGASP--MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR-------------NYDGLTALHVAVN 125 (241)
T ss_dssp --HHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCC-------------CTTSCCHHHHHHH
T ss_pred --HHHHHcCCCc--cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccc-------------CcCCCcHHHHHHH
Confidence 5566667776 6779999999999999999999999999776 77777 7899999999999
Q ss_pred cCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHH
Q 004266 150 YGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRV 229 (765)
Q Consensus 150 ~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ 229 (765)
.|+.+++++|+++ |++++..++..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+.. +..+
T Consensus 126 ~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~ 197 (241)
T 1k1a_A 126 TECQETVQLLLER-GADIDAVDIKSGRSPLIHAVENNS---LSMVQLLLQHGANVNAQMYSGSSALHSASGR----GLLP 197 (241)
T ss_dssp HTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHH----TCHH
T ss_pred cCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc----CCHH
Confidence 9999999999999 999999933899999999999999 9999999999999999999999999999999 5577
Q ss_pred HHHHHHHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCCCCCC
Q 004266 230 SLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSL 295 (765)
Q Consensus 230 ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypvdp~L 295 (765)
++++|+++|++++ .+|..|.||||+|+++++..+...|
T Consensus 198 ~v~~Ll~~ga~~~----------------------------~~~~~g~tpl~~A~~~~~~~i~~~l 235 (241)
T 1k1a_A 198 LVRTLVRSGADSS----------------------------LKNCHNDTPLMVARSRRVIDILRGK 235 (241)
T ss_dssp HHHHHHHTTCCTT----------------------------CCCTTSCCTTTTCSSHHHHHHHTC-
T ss_pred HHHHHHhcCCCCC----------------------------CcCCCCCCHHHHHHhcCcHHHHhhh
Confidence 9999999999999 7899999999999998887764433
No 6
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.4e-33 Score=293.47 Aligned_cols=205 Identities=15% Similarity=0.121 Sum_probs=184.5
Q ss_pred cccCCCCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhH
Q 004266 6 AVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPS 77 (765)
Q Consensus 6 ~vt~~ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~ 77 (765)
+..+.+|.||||+| +++|++.|+++|.+|. +|+||||+| +..+.+.+. ..
T Consensus 53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A-~~~g~~~~v-------------------~~ 110 (285)
T 3d9h_A 53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA--DHVSPLHEA-CLGGHLSCV-------------------KI 110 (285)
T ss_dssp CSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT--TCCCHHHHH-HHTTCHHHH-------------------HH
T ss_pred cCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC--CCCCHHHHH-HHCCcHHHH-------------------HH
Confidence 34678899999995 5789999999999999 999999999 444434333 56
Q ss_pred HHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHH
Q 004266 78 LQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVK 157 (765)
Q Consensus 78 Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk 157 (765)
|++.+.++ +..|.+|.||||+|+..|+.++|++|++.|++++.. .+|.||||+|+..|+.++++
T Consensus 111 Ll~~ga~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--------------~~g~t~L~~A~~~g~~~~v~ 174 (285)
T 3d9h_A 111 LLKHGAQV--NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE--------------SDLASPIHEAARRGHVECVN 174 (285)
T ss_dssp HHHTTCCS--SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCS--------------CTTSCHHHHHHHHTCHHHHH
T ss_pred HHHCCCCC--CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCC--------------CCCCCHHHHHHHcCCHHHHH
Confidence 66667777 788999999999999999999999999999999865 46999999999999999999
Q ss_pred HHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHC
Q 004266 158 LILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKN 237 (765)
Q Consensus 158 ~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~ 237 (765)
+||++ |++++.+ +..|.||||+|+..|+ .++|++|+++|++++. |..|+||||+|+.. +..+++++|+++
T Consensus 175 ~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~----~~~~~v~~Ll~~ 244 (285)
T 3d9h_A 175 SLIAY-GGNIDHK-ISHLGTPLYLACENQQ---RACVKKLLESGADVNQ-GKGQDSPLHAVVRT----ASEELACLLMDF 244 (285)
T ss_dssp HHHHT-TCCTTCC-BTTTBCHHHHHHHTTC---HHHHHHHHHTTCCTTC-CBTTBCHHHHHHHT----TCHHHHHHHHHT
T ss_pred HHHHC-CCCCCCc-CCCCCCHHHHHHHcCc---HHHHHHHHHCCCCCCC-CCCCCCHHHHHHHc----CCHHHHHHHHHC
Confidence 99999 9999999 9999999999999999 9999999999999995 99999999999999 567799999999
Q ss_pred CCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccC
Q 004266 238 GGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEK 286 (765)
Q Consensus 238 GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaek 286 (765)
|++++ .+|++|+||||+|+.+
T Consensus 245 gad~~----------------------------~~d~~g~t~l~~A~~~ 265 (285)
T 3d9h_A 245 GADTQ----------------------------AKNAEGKRPVELVPPE 265 (285)
T ss_dssp TCCTT----------------------------CCCTTSCCGGGGSCTT
T ss_pred CCCCC----------------------------CcCCCCCCHHHHhcCc
Confidence 99999 7999999999999843
No 7
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.5e-34 Score=298.26 Aligned_cols=208 Identities=21% Similarity=0.158 Sum_probs=164.5
Q ss_pred cCCCCCcHHHHH--------HHHHHHCCCC--------cccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCC
Q 004266 8 TMRNKSSPLKIS--------ISIFQKHTQN--------VFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSAS 71 (765)
Q Consensus 8 t~~ng~TPLH~A--------V~lLl~~gAd--------Vn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~ 71 (765)
.+.++.|||+.| |++|++.+++ ++..|. .|.||||.|+..+....+
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~--~~~t~L~~a~~~~~~~~~---------------- 68 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADP--EFCHPLCQCPKCAPAQKR---------------- 68 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------------------
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCc--cCCCHHHHHHHhCCHHHH----------------
Confidence 455567999995 5689998875 567777 899999999442221100
Q ss_pred CCChhHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcC
Q 004266 72 PPSKPSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYG 151 (765)
Q Consensus 72 ~~~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G 151 (765)
...|+..+.++ +..|.+|.||||+||..|+.++|++||+.|++++.. +.+|.||||+|+..+
T Consensus 69 ---v~~Ll~~Gadv--n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~-------------~~~g~t~l~~a~~~~ 130 (269)
T 4b93_B 69 ---LAKVPASGLGV--NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGAR-------------NADQAVPLHLACQQG 130 (269)
T ss_dssp ---------CCCCT--TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCC-------------CTTCCCHHHHHHHHT
T ss_pred ---HHHHHHCCCCC--CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCcc-------------CCCCCCccccccccC
Confidence 13455567777 788999999999999999999999999999999998 889999999999999
Q ss_pred CHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHH
Q 004266 152 SVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSL 231 (765)
Q Consensus 152 ~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~iv 231 (765)
+.+++++||+. |+++|.+ |..|+||||+|+..|+ .++|++||++|+|+|.+|..|+||||+|+.. +..++|
T Consensus 131 ~~~~~~~Ll~~-g~~~n~~-d~~g~TpL~~A~~~g~---~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~----g~~~~v 201 (269)
T 4b93_B 131 HFQVVKCLLDS-NAKPNKK-DLSGNTPLIYACSGGH---HELVALLLQHGASINASNNKGNTALHEAVIE----KHVFVV 201 (269)
T ss_dssp CHHHHHHHHHT-TCCSCCC-CTTCCCHHHHHHHTTC---GGGHHHHHHTTCCTTCBCTTSCBHHHHHHHT----TCHHHH
T ss_pred hHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHCCC---HHHHHHHHHCCCCCCccccCCCcHHHHHHHc----CCHHHH
Confidence 99999999999 9999999 9999999999999999 9999999999999999999999999999999 557799
Q ss_pred HHHHHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCC
Q 004266 232 EDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKE 288 (765)
Q Consensus 232 e~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ 288 (765)
++||++|+|++ ++|++|+||||+|+++++
T Consensus 202 ~~Ll~~Gad~~----------------------------~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 202 ELLLLHGASVQ----------------------------VLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHHHHTTCCSC----------------------------CCCTTSCCSGGGSCTTCH
T ss_pred HHHHHCCCCCC----------------------------CcCCCCCCHHHHHHhCCc
Confidence 99999999999 789999999999998876
No 8
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.3e-32 Score=277.18 Aligned_cols=204 Identities=19% Similarity=0.148 Sum_probs=177.9
Q ss_pred CCcHHHHH--------HHHHHHCCCCccc-ccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhcc
Q 004266 12 KSSPLKIS--------ISIFQKHTQNVFL-VDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNM 82 (765)
Q Consensus 12 g~TPLH~A--------V~lLl~~gAdVn~-~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~ 82 (765)
|.||||+| ++.|++.+.+++. .|. +|+||||+|+. .+...+. ..|+..+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--~g~t~L~~A~~-~~~~~~v-------------------~~Ll~~~ 59 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQ--DGRIPLHWSVS-FQAHEIT-------------------SFLLSKM 59 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCT--TSCCHHHHHHH-TTCHHHH-------------------HHHHHTC
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCC--CCCCHHHHHHH-cCCHHHH-------------------HHHHhcc
Confidence 68999996 4678888887665 888 99999999944 4433222 4566556
Q ss_pred CCCCccC-CCCCCchHHHHHHHcCCHHHHHHHHHCC--CCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHH
Q 004266 83 SNPTETM-KSDHSFSRLLELAADNDVEGFKQCICDT--SAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLI 159 (765)
Q Consensus 83 ~~l~~~~-~d~~G~TpLh~Aa~~G~~e~Vk~LLe~g--advn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~L 159 (765)
....... .+..|.||||+|+..|+.+++++|++.| ++++.. +..|.||||+|+..|+.+++++|
T Consensus 60 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~L 126 (228)
T 2dzn_A 60 ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI-------------TNQGVTCLHLAVGKKWFEVSQFL 126 (228)
T ss_dssp TTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHH
T ss_pred ccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccC-------------CcCCCCHHHHHHHcCCHhHHHHH
Confidence 3332244 7889999999999999999999999988 888888 78999999999999999999999
Q ss_pred HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHH-HC
Q 004266 160 LSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAG-ADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLL-KN 237 (765)
Q Consensus 160 L~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G-Advn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL-~~ 237 (765)
+++ |++++.+ +..|.||||+|+..|+ .+++++|+++| ++++.+|..|+||||+|+.. +..+++++|+ ++
T Consensus 127 l~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~----~~~~~v~~Ll~~~ 197 (228)
T 2dzn_A 127 IEN-GASVRIK-DKFNQIPLHRAASVGS---LKLIELLCGLGKSAVNWQDKQGWTPLFHALAE----GHGDAAVLLVEKY 197 (228)
T ss_dssp HHT-TCCSCCC-CTTSCCHHHHHHHTTC---HHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHT----TCHHHHHHHHHHH
T ss_pred HHc-CCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHhcCcccccCcCCCCCCHHHHHHHc----CCHHHHHHHHHhc
Confidence 999 9999999 9999999999999999 99999999999 99999999999999999999 5677999999 99
Q ss_pred CCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCC
Q 004266 238 GGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKK 287 (765)
Q Consensus 238 GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk 287 (765)
|++++ .+|++|.||||+|.+++
T Consensus 198 ga~~~----------------------------~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 198 GAEYD----------------------------LVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp CCCSC----------------------------CBCTTSCBGGGGCSSTT
T ss_pred CCCCC----------------------------ccCCCCCcHHHHHHHHH
Confidence 99999 78999999999997653
No 9
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.5e-32 Score=291.26 Aligned_cols=219 Identities=21% Similarity=0.141 Sum_probs=187.3
Q ss_pred CcccCCCCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChh
Q 004266 5 PAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKP 76 (765)
Q Consensus 5 p~vt~~ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~ 76 (765)
.+.++.+|.||||+| +++|+++|++++..|. +|+||||+| +..+.+.+. .
T Consensus 51 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A-~~~g~~~iv-------------------~ 108 (351)
T 3utm_A 51 CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK--GGLVPLHNA-CSYGHYEVT-------------------E 108 (351)
T ss_dssp CCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TCCCHHHHH-HHTTCHHHH-------------------H
T ss_pred cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC--CCCcHHHHH-HHCCCHHHH-------------------H
Confidence 456788899999995 5789999999999999 999999999 444434332 5
Q ss_pred HHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccc------hhhhhhchh-----------------
Q 004266 77 SLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVG------LWYSFQRLS----------------- 133 (765)
Q Consensus 77 ~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~------L~~a~~~g~----------------- 133 (765)
.|++.+.++ +..|..|.||||+|+..|+.++|++|+++|++++..+ ++++...+.
T Consensus 109 ~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 186 (351)
T 3utm_A 109 LLLKHGACV--NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAA 186 (351)
T ss_dssp HHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHH
Confidence 667677777 7789999999999999999999999999999988654 333321111
Q ss_pred ------------------hhccCCCChHHHHHHHc---CCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHH
Q 004266 134 ------------------KKIVLQHRTPLMVAAEY---GSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVD 192 (765)
Q Consensus 134 ------------------~~id~~G~TPLH~Aa~~---G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~e 192 (765)
...+..|.||||+|+.. +..+++++|++. |+++|.+ +..|.||||+|+..|+ .+
T Consensus 187 ~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~---~~ 261 (351)
T 3utm_A 187 READLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK-GANVNEK-NKDFMTPLHVAAERAH---ND 261 (351)
T ss_dssp HTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTC---HH
T ss_pred HhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc-CCCcCCc-CCCCCCHHHHHHHcCC---HH
Confidence 11246789999999999 558999999999 9999999 9999999999999999 99
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCcCCCCCCccc
Q 004266 193 VVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLT 272 (765)
Q Consensus 193 iVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~ 272 (765)
+|++|+++|+++|.+|..|+||||+|+.. +..+++++|+++|++++ .+
T Consensus 262 ~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~----~~~~~v~~Ll~~gad~~----------------------------~~ 309 (351)
T 3utm_A 262 VMEVLHKHGAKMNALDSLGQTALHRAALA----GHLQTCRLLLSYGSDPS----------------------------II 309 (351)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHH----TCHHHHHHHHHTTCCTT----------------------------CC
T ss_pred HHHHHHHCCCCCCCcCCCCCCHHHHHHHc----CcHHHHHHHHHcCCCCC----------------------------Cc
Confidence 99999999999999999999999999999 55779999999999999 78
Q ss_pred CCCCCccccccc
Q 004266 273 CKSDDVHAFVAP 284 (765)
Q Consensus 273 dk~G~TPLHlAa 284 (765)
|+.|.||||+|.
T Consensus 310 ~~~g~tal~~a~ 321 (351)
T 3utm_A 310 SLQGFTAAQMGN 321 (351)
T ss_dssp CTTSCCHHHHSC
T ss_pred CCCCCChhhhhh
Confidence 888889998883
No 10
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.9e-33 Score=285.94 Aligned_cols=241 Identities=22% Similarity=0.176 Sum_probs=196.1
Q ss_pred CCCCcHHHHH--------HHHHHHCCCCcccc-cCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHh
Q 004266 10 RNKSSPLKIS--------ISIFQKHTQNVFLV-DFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQR 80 (765)
Q Consensus 10 ~ng~TPLH~A--------V~lLl~~gAdVn~~-D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~ 80 (765)
.+|.||||.| ++.|++.|++++.. +. .|+||||+| +..+...+. ..|++
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~g~t~L~~A-~~~g~~~~v-------------------~~Ll~ 60 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE--GGWTPLHNA-VQMSREDIV-------------------ELLLR 60 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--TCCCHHHHH-HHTTCHHHH-------------------HHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcccccCC--CCCcHHHHH-HHcCCHHHH-------------------HHHHH
Confidence 3577899985 46788999999988 66 889999999 444433222 45666
Q ss_pred ccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHH
Q 004266 81 NMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLIL 160 (765)
Q Consensus 81 ~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL 160 (765)
.+.++ +..+.+|.||||+|+..|+.+++++|++.|++++.. +..|+||||+|+..|+.+++++|+
T Consensus 61 ~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll 125 (285)
T 1wdy_A 61 HGADP--VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC-------------DFYGFTAFMEAAVYGKVKALKFLY 125 (285)
T ss_dssp TTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB-------------CTTCCBHHHHHHHTTCHHHHHHHH
T ss_pred cCCCC--cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-------------CcccCCHHHHHHHhCCHHHHHHHH
Confidence 66666 677888999999999999999999999999999888 788999999999999999999999
Q ss_pred hcCCCCccccc---------CCCCCcHHHHHHhCCCCCHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHhCCCCCCHHHH
Q 004266 161 SLTKADVNLTC---------GLDKSTALHCAASGGSVNAVDVVKLLLFA-GADSNLTDAHGNRPFDVIVVHPNVPDSRVS 230 (765)
Q Consensus 161 ~~~GAdVN~~~---------d~~G~TpLH~Aa~~G~~~~~eiVklLL~~-GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~i 230 (765)
++ |++++... +..|.||||+|+..|+ .+++++|++. |++++.+|..|+||||+|+..++.....++
T Consensus 126 ~~-g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i 201 (285)
T 1wdy_A 126 KR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGH---VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI 201 (285)
T ss_dssp HT-TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC---HHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHH
T ss_pred Hh-CCCcccccccHHHHHhhccCCCcHHHHHHHcCC---HHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHH
Confidence 98 99988762 4678899999999999 9999999987 999999999999999999998776666889
Q ss_pred HHHHHHCCCCCCCcccccccccccCCc-----cccCCcC-CCCCCcccCCCCCccccccccCCCcCC
Q 004266 231 LEDLLKNGGSVSFDELQVSSVDLRSSS-----SLSSSSD-DSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 231 ve~LL~~GAdvn~~n~~~~t~~~~~~s-----~l~~a~~-~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
+++|+++|++++.+|..+.|+.+.... .+....+ .+.+++.+|..|+||||+|++.++..+
T Consensus 202 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i 268 (285)
T 1wdy_A 202 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 268 (285)
T ss_dssp HHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHH
Confidence 999999999999888888776433221 1222223 366888999999999999999998776
No 11
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.2e-33 Score=304.78 Aligned_cols=224 Identities=10% Similarity=0.000 Sum_probs=187.3
Q ss_pred CcccCCCCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChh
Q 004266 5 PAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKP 76 (765)
Q Consensus 5 p~vt~~ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~ 76 (765)
++.++.+|.||||+| |++|+++|+++|..|. .|+||||+|+. .+.+.+. .
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~--~g~t~L~~A~~-~g~~~~v-------------------~ 70 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNR--FGCTALHLACK-FGCVDTA-------------------K 70 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT--TCCCHHHHHHH-HCCHHHH-------------------H
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC--CCCcHHHHHHH-cCCHHHH-------------------H
Confidence 345677899999995 5789999999999999 99999999954 4433332 5
Q ss_pred HHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHC----CCCCcccchhhhh-----hchhhhccCCCChHHHHH
Q 004266 77 SLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICD----TSAICEVGLWYSF-----QRLSKKIVLQHRTPLMVA 147 (765)
Q Consensus 77 ~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~----gadvn~~~L~~a~-----~~g~~~id~~G~TPLH~A 147 (765)
.|+..+..+ .+.+|.||||+|+..|+.++|++|++. |++++... .... .......+..|.||||+|
T Consensus 71 ~Ll~~g~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A 145 (364)
T 3ljn_A 71 YLASVGEVH----SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLL-NECDEREVNEIGSHVKHCKGQTALHWC 145 (364)
T ss_dssp HHHHHCCCC----CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHH-TCCCCCCEEEETTEEEEESCCCHHHHH
T ss_pred HHHHCCCCc----cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHH-hhcchHhhhhhccccCCCCCCCHHHHH
Confidence 566556543 456899999999999999999999997 77776610 0000 000011267899999999
Q ss_pred HHcC--CHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHh
Q 004266 148 AEYG--SVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGAD-----SNLTDAHGNRPFDVIVV 220 (765)
Q Consensus 148 a~~G--~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAd-----vn~~D~~G~TPLh~Aa~ 220 (765)
+..| +.++|++||++ |+|+|.+ +..|.||||+|+..|+ .++|++||++|++ +|.+|..|+||||+|+.
T Consensus 146 ~~~g~~~~~~v~~Ll~~-ga~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~ 220 (364)
T 3ljn_A 146 VGLGPEYLEMIKILVQL-GASPTAK-DKADETPLMRAMEFRN---REALDLMMDTVPSKSSLRLDYANKQGNSHLHWAIL 220 (364)
T ss_dssp HHSCGGGHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHT
T ss_pred HHcCCchHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCC---HHHHHHHHhcccccccccccccCCCCCcHHHHHHH
Confidence 9999 99999999999 9999999 9999999999999999 9999999999999 99999999999999999
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCCC
Q 004266 221 HPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPID 292 (765)
Q Consensus 221 ~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypvd 292 (765)
. +..+++++||++|++++ .+|..|.||||+|++.++..+.
T Consensus 221 ~----g~~~~v~~Ll~~gad~~----------------------------~~d~~g~tpL~~A~~~g~~~~v 260 (364)
T 3ljn_A 221 I----NWEDVAMRFVEMGIDVN----------------------------MEDNEHTVPLYLSVRAAMVLLT 260 (364)
T ss_dssp T----TCHHHHHHHHTTTCCTT----------------------------CCCTTSCCHHHHHHHTCCHHHH
T ss_pred c----CCHHHHHHHHHcCCCCC----------------------------CCCCCCCCHHHHHHHhChHHHH
Confidence 9 55779999999999999 7899999999999999988774
No 12
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.7e-33 Score=310.01 Aligned_cols=195 Identities=20% Similarity=0.177 Sum_probs=124.7
Q ss_pred cCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccc------hhhhhhchhhhc--------------cCCCChHHHHH
Q 004266 88 TMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVG------LWYSFQRLSKKI--------------VLQHRTPLMVA 147 (765)
Q Consensus 88 ~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~------L~~a~~~g~~~i--------------d~~G~TPLH~A 147 (765)
...+..|.||||+|+..|+.+++++|++.|++++..+ ||+|+..|+.++ +..|.||||+|
T Consensus 140 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 219 (437)
T 1n11_A 140 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219 (437)
T ss_dssp CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHH
T ss_pred cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHH
Confidence 3456666777777777777777777777666666543 566665554332 24566777777
Q ss_pred HHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCH
Q 004266 148 AEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDS 227 (765)
Q Consensus 148 a~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~ 227 (765)
+..|+.+++++|++. |+++|.. +..|.||||+|+..|+ .++|++|+++|++++..|..|.||||+|+.. +.
T Consensus 220 ~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~----~~ 290 (437)
T 1n11_A 220 AKQNQVEVARSLLQY-GGSANAE-SVQGVTPLHLAAQEGH---AEMVALLLSKQANGNLGNKSGLTPLHLVAQE----GH 290 (437)
T ss_dssp HHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH----TC
T ss_pred HHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHCCC---HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc----CC
Confidence 777777777777776 7777766 6677777777777777 7777777777777777777777777777766 34
Q ss_pred HHHHHHHHHCCCCCCCcccccccccccCCc-----cccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 228 RVSLEDLLKNGGSVSFDELQVSSVDLRSSS-----SLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 228 ~~ive~LL~~GAdvn~~n~~~~t~~~~~~s-----~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
.+++++|+++|++++.++..+.|+.+.+.. .+....+.+.++|.+|+.|.||||+|+..++..+
T Consensus 291 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~i 359 (437)
T 1n11_A 291 VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDI 359 (437)
T ss_dssp HHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHH
Confidence 557777777777777666666655322211 1122223355677777777777777777666554
No 13
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2e-32 Score=276.80 Aligned_cols=209 Identities=20% Similarity=0.137 Sum_probs=183.4
Q ss_pred CCCCCcHHHHHH--------HHHHH-CCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHH
Q 004266 9 MRNKSSPLKISI--------SIFQK-HTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQ 79 (765)
Q Consensus 9 ~~ng~TPLH~AV--------~lLl~-~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll 79 (765)
...+.||||.|+ +.|++ .+..++..|. +|+||||+|+..+. +.+. +.|+
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~~g~-~~~v-------------------~~Ll 60 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQ--DSRTALHWACSAGH-TEIV-------------------EFLL 60 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCT--TSCCHHHHHHHHTC-HHHH-------------------HHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCC--CCCCHHHHHHHcCc-HHHH-------------------HHHH
Confidence 346789999965 34444 4556888899 99999999954443 3222 5566
Q ss_pred hccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHH
Q 004266 80 RNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLI 159 (765)
Q Consensus 80 ~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~L 159 (765)
+.+.++ +..|..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..|+.+++++|
T Consensus 61 ~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~L 125 (231)
T 3aji_A 61 QLGVPV--NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV-------------NQNGCTPLHYAASKNRHEIAVML 125 (231)
T ss_dssp HTTCCS--CCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HhCCCC--CCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHH
Confidence 666666 678899999999999999999999999999999998 88999999999999999999999
Q ss_pred HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCC
Q 004266 160 LSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGG 239 (765)
Q Consensus 160 L~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GA 239 (765)
+++ |++++.+ +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+.. +..+++++|+++|+
T Consensus 126 l~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~ga 196 (231)
T 3aji_A 126 LEG-GANPDAK-DHYDATAMHRAAAKGN---LKMVHILLFYKASTNIQDTEGNTPLHLACDE----ERVEEAKFLVTQGA 196 (231)
T ss_dssp HHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTC
T ss_pred HHc-CCCCCCc-CCCCCcHHHHHHHcCC---HHHHHHHHhcCCCccccCCCCCCHHHHHHHC----CCHHHHHHHHHCCC
Confidence 999 9999999 9999999999999999 9999999999999999999999999999999 55779999999999
Q ss_pred CCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 240 SVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 240 dvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
+++ .+|+.|.||||+|++.++..+
T Consensus 197 ~~~----------------------------~~~~~g~t~l~~A~~~~~~~i 220 (231)
T 3aji_A 197 SIY----------------------------IENKEEKTPLQVAKGGLGLIL 220 (231)
T ss_dssp CSC----------------------------CCCTTSCCHHHHSCHHHHHHH
T ss_pred CCC----------------------------CCCCCCCCHHHHHHhhHHHHH
Confidence 998 789999999999987765544
No 14
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.98 E-value=2.1e-32 Score=303.87 Aligned_cols=254 Identities=18% Similarity=0.152 Sum_probs=170.3
Q ss_pred CcccCCCCCcHHHH--------HHHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChh
Q 004266 5 PAVTMRNKSSPLKI--------SISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKP 76 (765)
Q Consensus 5 p~vt~~ng~TPLH~--------AV~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~ 76 (765)
++..+.+|.||||+ .+++|++++++++..+. .|.||||+|+. .+.+.+. +
T Consensus 106 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~--~g~t~L~~A~~-~g~~~~v-------------------~ 163 (437)
T 1n11_A 106 PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK--KGFTPLHVAAK-YGKVRVA-------------------E 163 (437)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT--TSCCHHHHHHH-TTCHHHH-------------------H
T ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCC--CCCCHHHHHHH-cCCHHHH-------------------H
Confidence 44555566666665 45566666666666665 66666666632 2222111 2
Q ss_pred HHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccc------hhhhhhchhhhc--------------
Q 004266 77 SLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVG------LWYSFQRLSKKI-------------- 136 (765)
Q Consensus 77 ~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~------L~~a~~~g~~~i-------------- 136 (765)
.|++.+.++ +..+..|.||||+|+..|+.++|++|++.|++++..+ ||+|+..|..++
T Consensus 164 ~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~ 241 (437)
T 1n11_A 164 LLLERDAHP--NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241 (437)
T ss_dssp HHHHTTCCT--TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHhCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence 333333333 3444445555555555555555555555444444322 444444433221
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q 004266 137 VLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFD 216 (765)
Q Consensus 137 d~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh 216 (765)
+..|.||||+|+..|+.++|++|+++ |+++|.. +..|.||||+|+..|+ .+++++|+++|+++|.+|..|+||||
T Consensus 242 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~ 316 (437)
T 1n11_A 242 SVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLG-NKSGLTPLHLVAQEGH---VPVADVLIKHGVMVDATTRMGYTPLH 316 (437)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCSSCCCHHH
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHhc-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHhCCccCCCCCCCCCCHHH
Confidence 56788888888888888888888888 8888888 8888888888888888 88888888888888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCc-----cccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 217 VIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSS-----SLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 217 ~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s-----~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
+|+..|+ .+++++|+++|++++.+|..+.|+.+.+.. .+....+.+.+++.+|++|.||||+|.+.++..+
T Consensus 317 ~A~~~g~----~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~ 392 (437)
T 1n11_A 317 VASHYGN----IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISV 392 (437)
T ss_dssp HHHHSSC----SHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHH
T ss_pred HHHHcCc----HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHH
Confidence 8888854 458888888888888888877776333221 2222233467888999999999999999988665
No 15
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.98 E-value=3.6e-32 Score=298.23 Aligned_cols=212 Identities=22% Similarity=0.213 Sum_probs=186.0
Q ss_pred cccC-CCCCcHHHHHHH----------------HHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCC
Q 004266 6 AVTM-RNKSSPLKISIS----------------IFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAP 68 (765)
Q Consensus 6 ~vt~-~ng~TPLH~AV~----------------lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t 68 (765)
+..+ .+|+||||+|+. .|++.|+++|.+|. +|.||||+|+. .+.+.+.
T Consensus 118 n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~--~g~TpL~~A~~-~g~~~iv------------ 182 (373)
T 2fo1_E 118 NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC--DENTPLMLAVL-ARRRRLV------------ 182 (373)
T ss_dssp TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT--TSCCHHHHHHH-HTCHHHH------------
T ss_pred cccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC--CCCCHHHHHHH-cChHHHH------------
Confidence 3445 789999999652 34589999999999 99999999944 4433332
Q ss_pred CCCCCChhHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCC---CCCcccchhhhhhchhhhccCCCChHHH
Q 004266 69 SASPPSKPSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDT---SAICEVGLWYSFQRLSKKIVLQHRTPLM 145 (765)
Q Consensus 69 ~s~~~~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~g---advn~~~L~~a~~~g~~~id~~G~TPLH 145 (765)
..|+..+.++ +..+..|.||||+|+..|+.++|++|++.+ ++++.. +..|.||||
T Consensus 183 -------~~Ll~~ga~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-------------d~~g~t~L~ 240 (373)
T 2fo1_E 183 -------AYLMKAGADP--TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL-------------DRNGMTALM 240 (373)
T ss_dssp -------HHHHHTTCCS--CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCC-------------CTTSCCHHH
T ss_pred -------HHHHHCCCCC--cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhc-------------CCCCCCHHH
Confidence 5677777777 778999999999999999999999999977 788888 899999999
Q ss_pred HHHHcC---CHHHHHHHHhcCCCCccc--------ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCC-CCCCCCCCCCCC
Q 004266 146 VAAEYG---SVDVVKLILSLTKADVNL--------TCGLDKSTALHCAASGGSVNAVDVVKLLLFAG-ADSNLTDAHGNR 213 (765)
Q Consensus 146 ~Aa~~G---~~evVk~LL~~~GAdVN~--------~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G-Advn~~D~~G~T 213 (765)
+|+..| +.+++++|+++ |++++. . +..|.||||+|+..|+ .++|++||++| +++|.+|..|+|
T Consensus 241 ~A~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~-d~~g~t~Lh~A~~~g~---~~~v~~Ll~~~~~~~n~~d~~g~T 315 (373)
T 2fo1_E 241 IVAHNEGRDQVASAKLLVEK-GAKVDYDGAARKDSE-KYKGRTALHYAAQVSN---MPIVKYLVGEKGSNKDKQDEDGKT 315 (373)
T ss_dssp HHHHSCSTTHHHHHHHHHHH-TCCSSCCSGGGTSSS-SCCCCCTHHHHHSSCC---HHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred HHHHhCCcchHHHHHHHHHC-CCCcccccccccCcc-cccCCCHHHHHHHhCC---HHHHHHHHHhcCCCccCcCCCCCC
Confidence 999998 89999999999 999987 4 6789999999999999 99999999875 999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 214 PFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 214 PLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
|||+|+.. +..+++++|+++|++++ .+|..|.||||+|+++++..+
T Consensus 316 pL~~A~~~----g~~~iv~~Ll~~gad~~----------------------------~~d~~g~t~l~~A~~~g~~~i 361 (373)
T 2fo1_E 316 PIMLAAQE----GRIEVVMYLIQQGASVE----------------------------AVDATDHTARQLAQANNHHNI 361 (373)
T ss_dssp HHHHHHHH----TCHHHHHHHHHTTCCSS----------------------------CCCSSSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHc----CCHHHHHHHHHcCCCcc----------------------------CCCCCCCCHHHHHHHcCCHHH
Confidence 99999999 55779999999999999 789999999999999998776
No 16
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.98 E-value=3.3e-32 Score=286.01 Aligned_cols=204 Identities=19% Similarity=0.149 Sum_probs=180.7
Q ss_pred CCCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhc
Q 004266 10 RNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRN 81 (765)
Q Consensus 10 ~ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~ 81 (765)
.+|.||||.| +++|+++|+++|..|. +|+||||+|+. .+.+.+. ..|++.
T Consensus 38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~-~g~~~~v-------------------~~Ll~~ 95 (299)
T 1s70_B 38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANV--DGLTALHQACI-DDNVDMV-------------------KFLVEN 95 (299)
T ss_dssp ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT--TCCBHHHHHHH-TTCHHHH-------------------HHHHHT
T ss_pred cCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCC--CCCCHHHHHHH-cCCHHHH-------------------HHHHHC
Confidence 4577999995 5689999999999999 99999999944 4434333 567777
Q ss_pred cCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHh
Q 004266 82 MSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILS 161 (765)
Q Consensus 82 ~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~ 161 (765)
+.++ +..|..|.||||+|+..|+.++|++|+++|++++.. +..|.||||+|+..|+.+++++|+.
T Consensus 96 ga~~--~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~-------------~~~g~t~l~~A~~~~~~~~~~~ll~ 160 (299)
T 1s70_B 96 GANI--NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV-------------NSEGDTPLDIAEEEAMEELLQNEVN 160 (299)
T ss_dssp TCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-------------CTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred CCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCc-------------CCCCCCHHHHHHhcchHHHHHHHHh
Confidence 7777 778999999999999999999999999999999998 8999999999999999999998887
Q ss_pred cCCCCccc-------------------------ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q 004266 162 LTKADVNL-------------------------TCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFD 216 (765)
Q Consensus 162 ~~GAdVN~-------------------------~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh 216 (765)
..+++++. ..+..|.||||+|+..|+ .++|++||++|+|+|.+|..|+||||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~g~d~~~~d~~g~tpL~ 237 (299)
T 1s70_B 161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY---TEVLKLLIQARYDVNIKDYDGWTPLH 237 (299)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTC---HHHHHHHHTTTCCTTCCCTTCCCHHH
T ss_pred hcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCc---HHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 65777654 126789999999999999 99999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCcccccccc
Q 004266 217 VIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPE 285 (765)
Q Consensus 217 ~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAae 285 (765)
+|+.. +..+++++|+++|++++ .+|+.|.||||+|++
T Consensus 238 ~A~~~----~~~~~v~~Ll~~gad~~----------------------------~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 238 AAAHW----GKEEACRILVENLCDME----------------------------AVNKVGQTAFDVADE 274 (299)
T ss_dssp HHHHT----TCHHHHHHHHHTTCCTT----------------------------CCCTTSCCTTTSCCS
T ss_pred HHHhc----CCHHHHHHHHHcCCCCC----------------------------CcCCCCCCHHHHHHH
Confidence 99999 55779999999999999 789999999999965
No 17
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.97 E-value=1.4e-31 Score=278.23 Aligned_cols=213 Identities=23% Similarity=0.207 Sum_probs=181.9
Q ss_pred cCcccCCCCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCCh
Q 004266 4 VPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSK 75 (765)
Q Consensus 4 vp~vt~~ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~ 75 (765)
.++.++.+|.||||+| +++|+++|+++|..|. +|+||||+|+.. +...+.
T Consensus 28 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~-~~~~~v------------------- 85 (261)
T 2xai_A 28 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA--DWHTPLFNACVS-GSWDCV------------------- 85 (261)
T ss_dssp CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHH-TCHHHH-------------------
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHc-CCHHHH-------------------
Confidence 4677888999999995 5789999999999999 999999999544 433222
Q ss_pred hHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHH
Q 004266 76 PSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDV 155 (765)
Q Consensus 76 ~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~ev 155 (765)
+.|++.+.++ + .+.+|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+..|+.++
T Consensus 86 ~~Ll~~g~~~--~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~ 149 (261)
T 2xai_A 86 NLLLQHGASV--Q-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHK-------------ISHLGTPLYLACENQQRAC 149 (261)
T ss_dssp HHHHHTTCCS--S-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-------------BTTTBCHHHHHHHTTCHHH
T ss_pred HHHHHCCCCC--C-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcC-------------CCCCCCHHHHHHHhCCHHH
Confidence 5566666666 2 3566999999999999999999999999999998 8999999999999999999
Q ss_pred HHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHH
Q 004266 156 VKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLL 235 (765)
Q Consensus 156 Vk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL 235 (765)
|++||++ |+++|. +..|.||||+|+..|+ .++|++|+++|+|++.+|.+|+||||+|+..+ +++++|+
T Consensus 150 v~~Ll~~-g~~~~~--~~~g~t~Lh~A~~~~~---~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~------~~~~~ll 217 (261)
T 2xai_A 150 VKKLLES-GADVNQ--GKGQDSPLHAVARTAS---EELACLLMDFGADTQAKNAEGKRPVELVPPES------PLAQLFL 217 (261)
T ss_dssp HHHHHHH-TCCTTC--CBTTBCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC------THHHHHH
T ss_pred HHHHHHc-CCCCCC--CCCCCChHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCChhhhccccc------cHHHHHH
Confidence 9999999 999994 7899999999999999 99999999999999999999999999999653 3899999
Q ss_pred HCCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccC
Q 004266 236 KNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEK 286 (765)
Q Consensus 236 ~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaek 286 (765)
++++....... .++++++..|.||||+|.+.
T Consensus 218 ~~~~~~~l~~~--------------------~~~~~r~~~g~t~l~~~~~~ 248 (261)
T 2xai_A 218 EREGPPSLMQL--------------------CRLRIRKCFGIQQHHKITKL 248 (261)
T ss_dssp HC-CCCCHHHH--------------------HHHHHHTTSCTTCGGGGGGS
T ss_pred hccCCccHHHH--------------------HHHHHHHHhchhccccCccc
Confidence 99876652111 12347899999999998754
No 18
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=1.3e-31 Score=269.51 Aligned_cols=190 Identities=19% Similarity=0.098 Sum_probs=119.4
Q ss_pred ccCCCCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHH
Q 004266 7 VTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSL 78 (765)
Q Consensus 7 vt~~ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~L 78 (765)
.++.+|.||||+| +++|+++|++++..|. .|+||||+|+. .+...+. ..|
T Consensus 20 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~-~~~~~~v-------------------~~L 77 (223)
T 2f8y_A 20 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN--MGRTPLHAAVS-ADAQGVF-------------------QIL 77 (223)
T ss_dssp CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHH-TTCHHHH-------------------HHH
T ss_pred ccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCC--CCCCHHHHHHH-cCCHHHH-------------------HHH
Confidence 3456666666664 3466666666666666 66666666633 2222111 333
Q ss_pred HhccC-CCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHH
Q 004266 79 QRNMS-NPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVK 157 (765)
Q Consensus 79 l~~~~-~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk 157 (765)
+.... .+ +..+..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..|+.++++
T Consensus 78 l~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~ 142 (223)
T 2f8y_A 78 IRNRATDL--DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-------------DDLGKSALHWAAAVNNVDAAV 142 (223)
T ss_dssp HHBTTSCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB-------------CTTSCBHHHHHHHTTCHHHHH
T ss_pred HHcCCCCc--ccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCc-------------CCCCCcHHHHHHHcCCHHHHH
Confidence 33332 33 455666666666666666666666666666666666 566666666666666666666
Q ss_pred HHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHC
Q 004266 158 LILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKN 237 (765)
Q Consensus 158 ~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~ 237 (765)
+||++ |+++|.+ +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+.. +..+++++|+++
T Consensus 143 ~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~----~~~~i~~~L~~~ 213 (223)
T 2f8y_A 143 VLLKN-GANKDMQ-NNREETPLFLAAREGS---YETAKVLLDHFANRDITDHMDRLPRDIAQER----MHHDIVRLLDEY 213 (223)
T ss_dssp HHHHT-TCCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT----TCHHHHHHHHHT
T ss_pred HHHHc-CCCCCCc-CCCCcCHHHHHHHcCC---HHHHHHHHHcCCCCccccccCCCHHHHHHHh----cchHHHHHHHHc
Confidence 66666 6666666 6666666666666666 6666666666666666666666666666666 445566666666
Q ss_pred CCCCC
Q 004266 238 GGSVS 242 (765)
Q Consensus 238 GAdvn 242 (765)
|+...
T Consensus 214 g~~~~ 218 (223)
T 2f8y_A 214 NLVRS 218 (223)
T ss_dssp TCSSC
T ss_pred CCCcc
Confidence 66543
No 19
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.97 E-value=1.1e-31 Score=286.23 Aligned_cols=216 Identities=21% Similarity=0.148 Sum_probs=187.6
Q ss_pred cccCCCCCcHHHHHHH---------HHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChh
Q 004266 6 AVTMRNKSSPLKISIS---------IFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKP 76 (765)
Q Consensus 6 ~vt~~ng~TPLH~AV~---------lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~ 76 (765)
.+++..+.|+||.|++ +|.+.+++++..|. .|+||||+| +..+.+.+. .
T Consensus 18 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~--~g~t~L~~A-~~~g~~~~v-------------------~ 75 (351)
T 3utm_A 18 VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDG--RKSTPLHLA-AGYNRVRIV-------------------Q 75 (351)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSST--TCCCHHHHH-HHTTCHHHH-------------------H
T ss_pred eeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCC--CCCCHHHHH-HHcCCHHHH-------------------H
Confidence 3455668899999653 45556999999999 999999999 444434333 5
Q ss_pred HHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHH
Q 004266 77 SLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVV 156 (765)
Q Consensus 77 ~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evV 156 (765)
.|++.+.++ +..|.+|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+..|+.++|
T Consensus 76 ~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v 140 (351)
T 3utm_A 76 LLLQHGADV--HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM-------------DLWQFTPLHEAASKNRVEVC 140 (351)
T ss_dssp HHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-------------CTTCCCHHHHHHHTTCHHHH
T ss_pred HHHHcCCCC--CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCC-------------CCCCCCHHHHHHHcCCHHHH
Confidence 667777777 778999999999999999999999999999999998 88999999999999999999
Q ss_pred HHHHhcCCCCcccc-----------------------------------------------------cCCCCCcHHHHHH
Q 004266 157 KLILSLTKADVNLT-----------------------------------------------------CGLDKSTALHCAA 183 (765)
Q Consensus 157 k~LL~~~GAdVN~~-----------------------------------------------------~d~~G~TpLH~Aa 183 (765)
++||++ |++++.. .+..|.||||+|+
T Consensus 141 ~~Ll~~-g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~ 219 (351)
T 3utm_A 141 SLLLSH-GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAV 219 (351)
T ss_dssp HHHHHT-TCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHH
T ss_pred HHHHHc-CCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHH
Confidence 999999 9998865 1356789999999
Q ss_pred hCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCc
Q 004266 184 SGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSS 263 (765)
Q Consensus 184 ~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~ 263 (765)
..++....+++++|+++|+++|.+|..|+||||+|+.. +..+++++|+++|++++
T Consensus 220 ~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~----g~~~~v~~Ll~~ga~~n--------------------- 274 (351)
T 3utm_A 220 ASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAER----AHNDVMEVLHKHGAKMN--------------------- 274 (351)
T ss_dssp HCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT----TCHHHHHHHHHTTCCTT---------------------
T ss_pred HHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHc----CCHHHHHHHHHCCCCCC---------------------
Confidence 99665558999999999999999999999999999999 55679999999999999
Q ss_pred CCCCCCcccCCCCCccccccccCCCcCC
Q 004266 264 DDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 264 ~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
.+|..|+||||+|++.+++.+
T Consensus 275 -------~~d~~g~t~L~~A~~~~~~~~ 295 (351)
T 3utm_A 275 -------ALDSLGQTALHRAALAGHLQT 295 (351)
T ss_dssp -------CCCTTSCCHHHHHHHHTCHHH
T ss_pred -------CcCCCCCCHHHHHHHcCcHHH
Confidence 789999999999999998776
No 20
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=1.7e-31 Score=272.08 Aligned_cols=219 Identities=21% Similarity=0.141 Sum_probs=170.5
Q ss_pred cccCCCCCcHHHHHHH--------HHHHC----CCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCC
Q 004266 6 AVTMRNKSSPLKISIS--------IFQKH----TQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPP 73 (765)
Q Consensus 6 ~vt~~ng~TPLH~AV~--------lLl~~----gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~ 73 (765)
+..+.+|.||||+|+. .|++. ++++|..|. .|+||||+|+..+. +.+.
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~--~g~t~L~~A~~~~~-~~~v----------------- 61 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN--LQQTPLHLAVITNQ-PEIA----------------- 61 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT--TCCCHHHHHHHTTC-HHHH-----------------
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCC--CCCCHHHHHHHcCC-HHHH-----------------
Confidence 3568899999999874 34444 458999999 99999999954333 3222
Q ss_pred ChhHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCH
Q 004266 74 SKPSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSV 153 (765)
Q Consensus 74 ~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~ 153 (765)
..|+..+.++ +..+..|.||||+|+..|+.+++++|++.|++.+...+ ....+..|.||||+|+..|+.
T Consensus 62 --~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-------~~~~~~~g~t~L~~A~~~~~~ 130 (236)
T 1ikn_D 62 --EALLGAGCDP--ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI-------LKATNYNGHTCLHLASIHGYL 130 (236)
T ss_dssp --HCCCSCCCCS--CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCG-------GGCCCTTCCCHHHHHHHTTCH
T ss_pred --HHHHHcCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHH-------hhccCCCCCCHHHHHHHcCCH
Confidence 2334445555 67889999999999999999999999998876432210 011267899999999999999
Q ss_pred HHHHHHHhcCCCCcccccCC-CCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHH
Q 004266 154 DVVKLILSLTKADVNLTCGL-DKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLE 232 (765)
Q Consensus 154 evVk~LL~~~GAdVN~~~d~-~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive 232 (765)
++|++||++ |+++|.+ +. .|.||||+|+..|+ .++|++||++|++++.+|..|+||||+|+.. +..++++
T Consensus 131 ~~v~~Ll~~-g~~~~~~-~~~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~----~~~~~~~ 201 (236)
T 1ikn_D 131 GIVELLVSL-GADVNAQ-EPCNGRTALHLAVDLQN---PDLVSLLLKCGADVNRVTYQGYSPYQLTWGR----PSTRIQQ 201 (236)
T ss_dssp HHHHHHHHH-TCCTTCC-CTTTCCCHHHHHHHTTC---HHHHHHHHTTTCCSCCCCTTCCCGGGGCTTS----SCHHHHH
T ss_pred HHHHHHHHc-CCCCCCC-CCCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcccCCCCCHHHHHHcc----CchHHHH
Confidence 999999999 9999999 76 99999999999999 9999999999999999999999999999998 5677999
Q ss_pred HHHHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcC
Q 004266 233 DLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYP 290 (765)
Q Consensus 233 ~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~yp 290 (765)
+|+++|++.. ....+.+|.||.+.+.+...+.
T Consensus 202 ~Ll~~ga~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~ 233 (236)
T 1ikn_D 202 QLGQLTLENL--------------------------QMLPESEDEESYDTESEFTEFT 233 (236)
T ss_dssp HHHTTSCGGG--------------------------SSCCCCCTTTCCCCC-------
T ss_pred HHHHcchhhh--------------------------hcCCccchHHHHhhhccccccc
Confidence 9999999765 1267888888888776655543
No 21
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.97 E-value=1e-31 Score=288.60 Aligned_cols=250 Identities=21% Similarity=0.157 Sum_probs=173.1
Q ss_pred CCCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhc
Q 004266 10 RNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRN 81 (765)
Q Consensus 10 ~ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~ 81 (765)
.+|.||||.| |++|+++|+|||.+|. ..|+||||+| +..+...++ +.|++.
T Consensus 23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~-~~g~TpLh~A-~~~g~~~iv-------------------~~Ll~~ 81 (337)
T 4g8k_A 23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE-EGGWTPLHNA-VQMSREDIV-------------------ELLLRH 81 (337)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-TTCCCHHHHH-HHTTCHHHH-------------------HHHHHT
T ss_pred CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCC-CCCcCHHHHH-HHcCCHHHH-------------------HHHHHc
Confidence 4578999985 5689999999999875 1489999999 444433332 456666
Q ss_pred cCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHh
Q 004266 82 MSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILS 161 (765)
Q Consensus 82 ~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~ 161 (765)
+..+ +..+..+.++++.++..+...++..+++.+++++.. +..|+||||+|+..|+.+++++|++
T Consensus 82 ga~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------d~~g~t~l~~A~~~~~~~~~~~ll~ 146 (337)
T 4g8k_A 82 GADP--VLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNEC-------------DFYGFTAFMEAAVYGKVKALKFLYK 146 (337)
T ss_dssp TCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCB-------------CTTCCBHHHHHHHTTCHHHHHHHHH
T ss_pred CCch--hhhccCCCchhHHHHhcccchhhHHhhhccchhhhh-------------ccCCCCHHHHHHHcCcHHHHHHHHH
Confidence 6666 566777777777777777777777777777777776 6777777777777777777777777
Q ss_pred cCCCCccccc---------CCCCCcHHHHHHhCCCCCHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHH
Q 004266 162 LTKADVNLTC---------GLDKSTALHCAASGGSVNAVDVVKLLLF-AGADSNLTDAHGNRPFDVIVVHPNVPDSRVSL 231 (765)
Q Consensus 162 ~~GAdVN~~~---------d~~G~TpLH~Aa~~G~~~~~eiVklLL~-~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~iv 231 (765)
+ |++++... +..|.||||+|+..|+ .++|++||+ .|+|+|.+|..|.|+||.++..++......++
T Consensus 147 ~-ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~---~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~ 222 (337)
T 4g8k_A 147 R-GANVNLRRKTKEDQERLRKGGATALMDAAEKGH---VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT 222 (337)
T ss_dssp T-TCCTTCCCCCC-----CTTCSCCHHHHHHHHTC---HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHH
T ss_pred c-CCCcchhhccccccccccCCCCcHHHHHHHCCC---HHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHH
Confidence 7 77766531 3356777777777777 777777774 47777777777777777766655555566677
Q ss_pred HHHHHCCCCCCCcccccccccccCCc-----cccCCcC-CCCCCcccCCCCCccccccccCCCcCCCCCCCCcc
Q 004266 232 EDLLKNGGSVSFDELQVSSVDLRSSS-----SLSSSSD-DSSLSSLTCKSDDVHAFVAPEKKEYPIDPSLPDIK 299 (765)
Q Consensus 232 e~LL~~GAdvn~~n~~~~t~~~~~~s-----~l~~a~~-~~~d~n~~dk~G~TPLHlAaekk~ypvdp~LpDi~ 299 (765)
++|+++|++++.+|..+.|+.+.... .+....+ .+.++|.+|++|+||||+|++.|+..+...|.+.+
T Consensus 223 ~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G 296 (337)
T 4g8k_A 223 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 296 (337)
T ss_dssp HHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 77777777777777766665332211 1111111 24577799999999999999999888754444433
No 22
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=2.3e-30 Score=260.34 Aligned_cols=188 Identities=19% Similarity=0.159 Sum_probs=168.5
Q ss_pred HHHHHHCCCCcccc-cCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCccCCCCCCchHH
Q 004266 20 ISIFQKHTQNVFLV-DFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTETMKSDHSFSRL 98 (765)
Q Consensus 20 V~lLl~~gAdVn~~-D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~~~d~~G~TpL 98 (765)
+++|+++|++++.. |. +|+||||+| +..+.+.+. ..|++.+.++ +..+..|.|||
T Consensus 7 i~~Ll~~g~~~~~~~d~--~g~t~L~~A-~~~g~~~~v-------------------~~Ll~~g~~~--~~~~~~g~t~L 62 (223)
T 2f8y_A 7 ISDFIYQGASLHNQTDR--TGETALHLA-ARYSRSDAA-------------------KRLLEASADA--NIQDNMGRTPL 62 (223)
T ss_dssp EETTEETTCCTTCCCTT--TCCCHHHHH-HHTTCHHHH-------------------HHHHHTTCCT--TCCCTTSCCHH
T ss_pred HHHHHHcCCCcccccCC--CCCchHHHH-HHcCCHHHH-------------------HHHHHcCCCC--CCcCCCCCCHH
Confidence 45688899999876 78 999999999 444434332 5566667776 77899999999
Q ss_pred HHHHHcCCHHHHHHHHHCCC-CCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCc
Q 004266 99 LELAADNDVEGFKQCICDTS-AICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKST 177 (765)
Q Consensus 99 h~Aa~~G~~e~Vk~LLe~ga-dvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~T 177 (765)
|+|+..|+.+++++|++.+. +++.. +..|.||||+|+..|+.+++++|+++ |+++|.+ +..|.|
T Consensus 63 ~~A~~~~~~~~v~~Ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t 127 (223)
T 2f8y_A 63 HAAVSADAQGVFQILIRNRATDLDAR-------------MHDGTTPLILAARLAVEGMLEDLINS-HADVNAV-DDLGKS 127 (223)
T ss_dssp HHHHHTTCHHHHHHHHHBTTSCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCB-CTTSCB
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcccC-------------CCCCCcHHHHHHHhCcHHHHHHHHHc-CCCCcCc-CCCCCc
Confidence 99999999999999999776 88887 78999999999999999999999999 9999999 999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccc
Q 004266 178 ALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDL 253 (765)
Q Consensus 178 pLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~ 253 (765)
|||+|+..|+ .+++++|+++|++++.+|..|.||||+|+.. +..+++++|+++|++++.+|..+.|+..
T Consensus 128 ~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~~~~~~~~g~t~l~ 196 (223)
T 2f8y_A 128 ALHWAAAVNN---VDAAVVLLKNGANKDMQNNREETPLFLAARE----GSYETAKVLLDHFANRDITDHMDRLPRD 196 (223)
T ss_dssp HHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH----TCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred HHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCcCHHHHHHHc----CCHHHHHHHHHcCCCCccccccCCCHHH
Confidence 9999999999 9999999999999999999999999999998 5677999999999999999999988743
No 23
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.97 E-value=1.3e-31 Score=277.70 Aligned_cols=191 Identities=18% Similarity=0.115 Sum_probs=167.3
Q ss_pred cccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCC-ccCCCCCCchHHHHHHHcCCHH
Q 004266 30 VFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPT-ETMKSDHSFSRLLELAADNDVE 108 (765)
Q Consensus 30 Vn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~-~~~~d~~G~TpLh~Aa~~G~~e 108 (765)
++.+|. +|+||||+| +..+.+.+. ..|++.+.... .+..+..|.||||+||..|+.+
T Consensus 2 ~~~~d~--~g~t~L~~A-~~~g~~~~v-------------------~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~ 59 (282)
T 1oy3_D 2 FGYVTE--DGDTALHLA-VIHQHEPFL-------------------DFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59 (282)
T ss_dssp CCCCCT--TCCCHHHHH-HHTTCHHHH-------------------HHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHH
T ss_pred CCccCC--CCCcHHHHH-HHcCCHHHH-------------------HHHHhcCCCcccccccCCCCCCHHHHHHHcCCHH
Confidence 567888 999999999 444433222 45555555421 2678899999999999999999
Q ss_pred HHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCC----------------------
Q 004266 109 GFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKAD---------------------- 166 (765)
Q Consensus 109 ~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAd---------------------- 166 (765)
+|++||++|++++.. +..|+||||+|+..|+.+++++||++ |++
T Consensus 60 ~v~~Ll~~ga~~~~~-------------~~~g~tpL~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (282)
T 1oy3_D 60 TVEKLYAAGAGVLVA-------------ERGGHTALHLACRVRAHTCACVLLQP-RPSHPRDASDTYLTQSQDCTPDTSH 125 (282)
T ss_dssp HHHHHHHTTCCSSCC-------------CTTSCCHHHHHTTTTCHHHHHHHSSS-CCSSCCCC-----------------
T ss_pred HHHHHHHcCCCCCCC-------------CCCCCCHHHHHHHcCCcchhHhhhcc-CCCCchhhHHHHhhcccccCcchhc
Confidence 999999999999998 88999999999999999999999997 654
Q ss_pred -------------------------cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHh
Q 004266 167 -------------------------VNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAH-GNRPFDVIVV 220 (765)
Q Consensus 167 -------------------------VN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~-G~TPLh~Aa~ 220 (765)
++.+ +..|.||||+|+..|+ .++|++||++|++++.++.. |+||||+|+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~ 201 (282)
T 1oy3_D 126 APAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGHTPLHVAVIHKD---AEMVRLLRDAGADLNKPEPTCGRTPLHLAVE 201 (282)
T ss_dssp ------------------CCCGGGGTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH
T ss_pred chhhhccccccchhhhhhhhhhhhcCCCc-CCCCcCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCcCHHHHHHH
Confidence 7777 8899999999999999 99999999999999999965 9999999999
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCCC
Q 004266 221 HPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPID 292 (765)
Q Consensus 221 ~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypvd 292 (765)
. +..+++++||++|++++ .+|..|+||||+|+.+++..+.
T Consensus 202 ~----~~~~~v~~Ll~~gad~~----------------------------~~d~~g~tpL~~A~~~~~~~~v 241 (282)
T 1oy3_D 202 A----QAASVLELLLKAGADPT----------------------------ARMYGGRTPLGSALLRPNPILA 241 (282)
T ss_dssp T----TCHHHHHHHHHTTCCTT----------------------------CCCTTSCCHHHHHHTSSCHHHH
T ss_pred c----CCHHHHHHHHHcCCCCc----------------------------ccccCCCCHHHHHHHcCCcHHH
Confidence 9 55779999999999999 7899999999999999987764
No 24
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.97 E-value=2.1e-30 Score=262.07 Aligned_cols=191 Identities=16% Similarity=0.071 Sum_probs=172.1
Q ss_pred CcccCCCCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChh
Q 004266 5 PAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKP 76 (765)
Q Consensus 5 p~vt~~ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~ 76 (765)
.+.++.+|.||||+| +++|+++|++++..|. .|+||||+|+. .+...+. .
T Consensus 33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~-~~~~~~v-------------------~ 90 (231)
T 3aji_A 33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD--AGWSPLHIAAS-AGXDEIV-------------------K 90 (231)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT--TSCCHHHHHHH-HTCHHHH-------------------H
T ss_pred hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCC--CCCCHHHHHHH-cCHHHHH-------------------H
Confidence 456788999999995 5789999999999999 99999999954 3333222 4
Q ss_pred HHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHH
Q 004266 77 SLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVV 156 (765)
Q Consensus 77 ~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evV 156 (765)
.|+..+.++ +..+..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..|+.+++
T Consensus 91 ~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v 155 (231)
T 3aji_A 91 ALLVKGAHV--NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-------------DHYDATAMHRAAAKGNLKMV 155 (231)
T ss_dssp HHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-------------CTTSCCHHHHHHHHTCHHHH
T ss_pred HHHHcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-------------CCCCCcHHHHHHHcCCHHHH
Confidence 566666666 678999999999999999999999999999999998 88999999999999999999
Q ss_pred HHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHH
Q 004266 157 KLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLK 236 (765)
Q Consensus 157 k~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~ 236 (765)
++|+++ |+++|.+ +..|.||||+|+..|+ .+++++|+++|+|++.+|..|.||||+|+.. ...+++++|++
T Consensus 156 ~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~----~~~~i~~lL~~ 226 (231)
T 3aji_A 156 HILLFY-KASTNIQ-DTEGNTPLHLACDEER---VEEAKFLVTQGASIYIENKEEKTPLQVAKGG----LGLILKRLAEG 226 (231)
T ss_dssp HHHHHT-TCCSCCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHSCHH----HHHHHHHHHHH
T ss_pred HHHHhc-CCCcccc-CCCCCCHHHHHHHCCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHhh----HHHHHHHHHcc
Confidence 999999 9999999 9999999999999999 9999999999999999999999999999987 77889999999
Q ss_pred CCCCC
Q 004266 237 NGGSV 241 (765)
Q Consensus 237 ~GAdv 241 (765)
+|+++
T Consensus 227 ~~a~i 231 (231)
T 3aji_A 227 EEASM 231 (231)
T ss_dssp HHHCC
T ss_pred ccccC
Confidence 88764
No 25
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.97 E-value=4e-31 Score=278.23 Aligned_cols=192 Identities=19% Similarity=0.137 Sum_probs=146.6
Q ss_pred cccCCCCCcHHHHH---------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChh
Q 004266 6 AVTMRNKSSPLKIS---------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKP 76 (765)
Q Consensus 6 ~vt~~ng~TPLH~A---------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~ 76 (765)
+..+.++.||||.| +++|++.|+|||..|. +|+||||+|+. .+...+. .
T Consensus 46 ~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~--~G~TpLh~A~~-~g~~~~v-------------------~ 103 (269)
T 4b93_B 46 SAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ--DGSSPLHVAAL-HGRADLI-------------------P 103 (269)
T ss_dssp -----------------------------CCCCTTCCCT--TSCCHHHHHHH-TTCTTHH-------------------H
T ss_pred cccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC--CCCCHHHHHHH-cCcHHHH-------------------H
Confidence 34566789999984 4578999999999999 99999999944 4433222 5
Q ss_pred HHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHH
Q 004266 77 SLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVV 156 (765)
Q Consensus 77 ~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evV 156 (765)
.|+..+.++ ...+.+|.||||+|+..++.+++++|++.|+++|.. |..|+||||+||..|+.++|
T Consensus 104 ~Ll~~~a~~--~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~-------------d~~g~TpL~~A~~~g~~~~v 168 (269)
T 4b93_B 104 LLLKHGANA--GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK-------------DLSGNTPLIYACSGGHHELV 168 (269)
T ss_dssp HHHHTTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-------------CTTCCCHHHHHHHTTCGGGH
T ss_pred HHHhcCCCc--CccCCCCCCccccccccChHHHHHHHHHCCCCCCCC-------------CCCCCCHHHHHHHCCCHHHH
Confidence 667677777 788999999999999999999999999999999998 89999999999999999999
Q ss_pred HHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHH
Q 004266 157 KLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLK 236 (765)
Q Consensus 157 k~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~ 236 (765)
++||++ |+|||.+ +..|+||||+|+..|+ .++|++||++|||+|.+|.+|+||||+|+++++ ..+++++|..
T Consensus 169 ~~Ll~~-gadvn~~-~~~g~t~Lh~A~~~g~---~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~---i~~lL~~l~~ 240 (269)
T 4b93_B 169 ALLLQH-GASINAS-NNKGNTALHEAVIEKH---VFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK---IMELLQVVPS 240 (269)
T ss_dssp HHHHHT-TCCTTCB-CTTSCBHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH---HHHHTTC---
T ss_pred HHHHHC-CCCCCcc-ccCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc---HHHHHHHHHH
Confidence 999999 9999999 9999999999999999 999999999999999999999999999988732 2456666666
Q ss_pred CCCCCC
Q 004266 237 NGGSVS 242 (765)
Q Consensus 237 ~GAdvn 242 (765)
.++.++
T Consensus 241 ~~~~~~ 246 (269)
T 4b93_B 241 CVASLD 246 (269)
T ss_dssp ------
T ss_pred hchhhh
Confidence 665554
No 26
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=262.52 Aligned_cols=213 Identities=17% Similarity=0.098 Sum_probs=185.4
Q ss_pred ccCCCCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHH
Q 004266 7 VTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSL 78 (765)
Q Consensus 7 vt~~ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~L 78 (765)
-.+..+.||||.| ++.|++.|++++..|. .|.||||+| +..+.+.+. ..|
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~--~g~t~L~~A-~~~~~~~~v-------------------~~L 61 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK--ENVTLLHWA-AINNRIDLV-------------------KYY 61 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHH-HHTTCHHHH-------------------HHH
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCC--CCCCHHHHH-HHhCCHHHH-------------------HHH
Confidence 3467788999995 5689999999999999 999999999 444433222 455
Q ss_pred HhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHH
Q 004266 79 QRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKL 158 (765)
Q Consensus 79 l~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~ 158 (765)
++.+..+. ...+..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..|+.+++++
T Consensus 62 l~~~~~~~-~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-------------~~~g~t~l~~A~~~~~~~~~~~ 127 (240)
T 3eu9_A 62 ISKGAIVD-QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI-------------DGEGCSCIHLAAQFGHTSIVAY 127 (240)
T ss_dssp HHTTCCTT-CCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHcCCcch-hhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCccc-------------CCCCCCHHHHHHHcCHHHHHHH
Confidence 55555541 234556999999999999999999999999999998 8899999999999999999999
Q ss_pred HHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHhCCCCCCHHHHHHHHHHC
Q 004266 159 ILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDA-HGNRPFDVIVVHPNVPDSRVSLEDLLKN 237 (765)
Q Consensus 159 LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~-~G~TPLh~Aa~~g~~~~~~~ive~LL~~ 237 (765)
|+++ |++++.+ +..|.||||+|+..++. .+++++|++.|++++..+. .|.||||+|+.. +..+++++|+++
T Consensus 128 Ll~~-~~~~~~~-~~~g~t~l~~a~~~~~~--~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~ 199 (240)
T 3eu9_A 128 LIAK-GQDVDMM-DQNGMTPLMWAAYRTHS--VDPTRLLLTFNVSVNLGDKYHKNTALHWAVLA----GNTTVISLLLEA 199 (240)
T ss_dssp HHHT-TCCTTCC-CTTSCCHHHHHHHHCCS--STTHHHHHHTTCCTTCCCTTTCCCHHHHHHHH----TCHHHHHHHHHH
T ss_pred HHhc-CCCcccc-CCCCCcHHHHHHHhCCh--HHHHHHHHhcCCCcchhhccCCCcHHHHHHHc----CCHHHHHHHHHc
Confidence 9999 9999999 99999999999965541 7899999999999999997 999999999999 557799999999
Q ss_pred CCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 238 GGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 238 GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
|++++ .+|..|+||||+|++.++..+
T Consensus 200 g~~~~----------------------------~~~~~g~t~l~~A~~~~~~~~ 225 (240)
T 3eu9_A 200 GANVD----------------------------AQNIKGESALDLAKQRKNVWM 225 (240)
T ss_dssp TCCTT----------------------------CBCTTSCBHHHHHHHTTCHHH
T ss_pred CCCCC----------------------------CcCCCCCCHHHHHHHcCcHHH
Confidence 99998 789999999999999998766
No 27
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=7.5e-31 Score=265.88 Aligned_cols=198 Identities=18% Similarity=0.127 Sum_probs=163.3
Q ss_pred CCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhc-cCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHC
Q 004266 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRN-MSNPTETMKSDHSFSRLLELAADNDVEGFKQCICD 116 (765)
Q Consensus 38 ~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~-~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~ 116 (765)
.|+||||+|+. .+.+.+. ..|+.. +.++ +..|.+|.||||+|+..|+.++|++|++.
T Consensus 2 ~g~t~L~~A~~-~g~~~~v-------------------~~Ll~~~g~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 2 IWESPLLLAAK-ENDVQAL-------------------SKLLKFEGCEV--HQRGAMGETALHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp CTTCHHHHHHH-TTCHHHH-------------------HHHHTTTCSCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHH-cCCHHHH-------------------HHHHHhcCCCc--ccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 68999999944 4433222 445544 5566 67899999999999999999999999999
Q ss_pred CCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCC-------------CCCcHHHHHH
Q 004266 117 TSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGL-------------DKSTALHCAA 183 (765)
Q Consensus 117 gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~-------------~G~TpLH~Aa 183 (765)
|+++.... ....+..|+||||+|+..|+.++|++||++ |++++.. +. .|.||||+|+
T Consensus 60 ~~~~~~~~--------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~~~~~~~~~~~~~~g~t~L~~A~ 129 (232)
T 2rfa_A 60 APELVFEP--------MTSELYEGQTALHIAVINQNVNLVRALLAR-GASVSAR-ATGSVFHYRPHNLIYYGEHPLSFAA 129 (232)
T ss_dssp CGGGGGCC--------CCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CCSGGGSCCTTCSCCCCSSHHHHHH
T ss_pred Cchhcccc--------ccccCCCCcCHHHHHHHcCCHHHHHHHHhC-CCCCCcc-cCCcceeecccccccCCCCHHHHHH
Confidence 88863210 001167899999999999999999999999 9999998 55 7999999999
Q ss_pred hCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCc
Q 004266 184 SGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSS 263 (765)
Q Consensus 184 ~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~ 263 (765)
..|+ .++|++|+++|+|+|.+|..|+||||+|+..|+.+...+++++|+++|++++..+.
T Consensus 130 ~~~~---~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~----------------- 189 (232)
T 2rfa_A 130 CVGS---EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL----------------- 189 (232)
T ss_dssp HHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCG-----------------
T ss_pred HcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhh-----------------
Confidence 9999 99999999999999999999999999999996655445566999999998862111
Q ss_pred CCCCCCcccCCCCCccccccccCCCcCCC
Q 004266 264 DDSSLSSLTCKSDDVHAFVAPEKKEYPID 292 (765)
Q Consensus 264 ~~~~d~n~~dk~G~TPLHlAaekk~ypvd 292 (765)
.+.+|+.|.||||+|+++++..+.
T Consensus 190 -----~~~~~~~g~tpl~~A~~~g~~~~v 213 (232)
T 2rfa_A 190 -----ELVPNNQGLTPFKLAGVEGNIVMF 213 (232)
T ss_dssp -----GGCCCTTSCCHHHHHHHHTCHHHH
T ss_pred -----hccCCCCCCCHHHHHHHcCCHHHH
Confidence 137899999999999999988773
No 28
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.97 E-value=6.7e-31 Score=277.43 Aligned_cols=207 Identities=18% Similarity=0.160 Sum_probs=168.1
Q ss_pred CCCCcHHHHHHHH-----HHH--------------CCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCC
Q 004266 10 RNKSSPLKISISI-----FQK--------------HTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSA 70 (765)
Q Consensus 10 ~ng~TPLH~AV~l-----Ll~--------------~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s 70 (765)
..|.|+||+|+.. +.+ ....++..|. +|+||||+|+. .+.+.+.
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~g~t~L~~Aa~-~g~~~~v-------------- 75 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAV--SDWSPMHEAAI-HGHQLSL-------------- 75 (285)
T ss_dssp -----------------------------CCSEECCCCTTCSSSC--CSCCHHHHHHH-TTCHHHH--------------
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCc--cCCCHHHHHHH-cCCHHHH--------------
Confidence 5689999997642 111 1234667788 99999999944 4433222
Q ss_pred CCCChhHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHc
Q 004266 71 SPPSKPSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEY 150 (765)
Q Consensus 71 ~~~~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~ 150 (765)
..|+..+.++ +..|.+|.||||+||..|+.++|++|++.|++++.. +..|+||||+|+..
T Consensus 76 -----~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-------------~~~g~t~L~~A~~~ 135 (285)
T 3d9h_A 76 -----RNLISQGWAV--NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV-------------TADWHTPLFNACVS 135 (285)
T ss_dssp -----HHHHHTTCCS--CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCC-------------CTTCCCHHHHHHHH
T ss_pred -----HHHHHCCCCC--CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC-------------CCCCCCHHHHHHHc
Confidence 5566666666 778999999999999999999999999999999998 89999999999999
Q ss_pred CCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHH
Q 004266 151 GSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVS 230 (765)
Q Consensus 151 G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~i 230 (765)
|+.++|++|+++ |++++.. .+|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+.. +..++
T Consensus 136 ~~~~~v~~Ll~~-g~~~~~~--~~g~t~L~~A~~~g~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~----~~~~~ 205 (285)
T 3d9h_A 136 GSWDCVNLLLQH-GASVQPE--SDLASPIHEAARRGH---VECVNSLIAYGGNIDHKISHLGTPLYLACEN----QQRAC 205 (285)
T ss_dssp TCHHHHHHHHHT-TCCSSCS--CTTSCHHHHHHHHTC---HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHT----TCHHH
T ss_pred CHHHHHHHHHHC-CCCCCCC--CCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc----CcHHH
Confidence 999999999999 9999975 469999999999999 9999999999999999999999999999999 56779
Q ss_pred HHHHHHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCCC
Q 004266 231 LEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPID 292 (765)
Q Consensus 231 ve~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypvd 292 (765)
+++|+++|++++ .+..|+||||+|+..++..+.
T Consensus 206 v~~Ll~~ga~~~-----------------------------~~~~g~t~L~~A~~~~~~~~v 238 (285)
T 3d9h_A 206 VKKLLESGADVN-----------------------------QGKGQDSPLHAVVRTASEELA 238 (285)
T ss_dssp HHHHHHTTCCTT-----------------------------CCBTTBCHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCCCC-----------------------------CCCCCCCHHHHHHHcCCHHHH
Confidence 999999999998 378899999999999987663
No 29
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.97 E-value=2.2e-31 Score=291.95 Aligned_cols=225 Identities=12% Similarity=0.074 Sum_probs=181.5
Q ss_pred cCcccCCCCCcHHHHHHH-------HHHHCCCCccccc-CCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCCh
Q 004266 4 VPAVTMRNKSSPLKISIS-------IFQKHTQNVFLVD-FAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSK 75 (765)
Q Consensus 4 vp~vt~~ng~TPLH~AV~-------lLl~~gAdVn~~D-~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~ 75 (765)
+|...+.+|.||||+|+. +|+ .+++|.+| . .|+||||+| +..+...+. +..+.. ..
T Consensus 86 ~~~~~~~~g~t~L~~Aa~~~~~~~~~L~--~~~~n~~d~~--~g~t~Lh~A-a~~g~~~~v-----~~Ll~~------~~ 149 (373)
T 2fo1_E 86 IPTEPEPESPIKLHTEAAGSYAITEPIT--RESVNIIDPR--HNRTVLHWI-ASNSSAEKS-----EDLIVH------EA 149 (373)
T ss_dssp --------CCCHHHHHHHSSSCCCSCCS--TTTTTTCCCS--SCCCHHHHH-HCTTCCSCC-----TTHHHH------HH
T ss_pred cccCCCCCCccHHHHHhcCCchHHHHhc--cccccccCCc--CCCCHHHHH-HHCCCHHHH-----HHHHHH------HH
Confidence 567788999999999875 232 36788888 6 899999999 545433222 110000 01
Q ss_pred hHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHH
Q 004266 76 PSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDV 155 (765)
Q Consensus 76 ~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~ev 155 (765)
..++..+.++ +..|.+|.||||+|+..|+.++|++||+.|++++.. +..|.||||+|+..|+.++
T Consensus 150 ~~ll~~ga~v--n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~-------------~~~g~t~L~~A~~~g~~~~ 214 (373)
T 2fo1_E 150 KECIAAGADV--NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY-------------NKSERSALHQAAANRDFGM 214 (373)
T ss_dssp HHHHHTCCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-------------CTTCCCHHHHHHHTTCHHH
T ss_pred HHHHhcCCCC--cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCccc-------------CCCCCCHHHHHHHCCCHHH
Confidence 2334567777 788999999999999999999999999999999998 8899999999999999999
Q ss_pred HHHHHhcCC---CCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCC--------CCCCCCCHHHHHHhCCCC
Q 004266 156 VKLILSLTK---ADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNL--------TDAHGNRPFDVIVVHPNV 224 (765)
Q Consensus 156 Vk~LL~~~G---AdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~--------~D~~G~TPLh~Aa~~g~~ 224 (765)
|++||++ + ++++.. +..|.||||+|+..|.....+++++|+++|++++. .|..|+||||+|+..
T Consensus 215 v~~Ll~~-~~~~~~~~~~-d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~--- 289 (373)
T 2fo1_E 215 MVYMLNS-TKLKGDIEEL-DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV--- 289 (373)
T ss_dssp HHHHTTS-HHHHHTTSCC-CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSS---
T ss_pred HHHHHhc-CccccChhhc-CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHh---
Confidence 9999998 7 899999 99999999999999832239999999999999987 678999999999999
Q ss_pred CCHHHHHHHHHHCC-CCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCCCC
Q 004266 225 PDSRVSLEDLLKNG-GSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDP 293 (765)
Q Consensus 225 ~~~~~ive~LL~~G-Advn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypvdp 293 (765)
+..+++++|+++| ++++ .+|.+|.||||+|+..++..+..
T Consensus 290 -g~~~~v~~Ll~~~~~~~n----------------------------~~d~~g~TpL~~A~~~g~~~iv~ 330 (373)
T 2fo1_E 290 -SNMPIVKYLVGEKGSNKD----------------------------KQDEDGKTPIMLAAQEGRIEVVM 330 (373)
T ss_dssp -CCHHHHHHHHHHSCCCTT----------------------------CCCTTCCCHHHHHHHHTCHHHHH
T ss_pred -CCHHHHHHHHHhcCCCcc----------------------------CcCCCCCCHHHHHHHcCCHHHHH
Confidence 5577999999876 8888 78999999999999999887643
No 30
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.97 E-value=5.4e-31 Score=285.94 Aligned_cols=226 Identities=15% Similarity=0.095 Sum_probs=185.8
Q ss_pred cCcccCCCCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCCh
Q 004266 4 VPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSK 75 (765)
Q Consensus 4 vp~vt~~ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~ 75 (765)
.++..+.+|.||||+| |++|+++|++++. . +|.||||+|+. .+...+.
T Consensus 45 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~--~g~t~L~~A~~-~g~~~~v------------------- 100 (364)
T 3ljn_A 45 SPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--W--HGQKPIHLAVM-ANKTDLV------------------- 100 (364)
T ss_dssp CTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--B--TTBCHHHHHHH-TTCHHHH-------------------
T ss_pred CccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--c--CCCCHHHHHHH-cCCHHHH-------------------
Confidence 4677889999999995 5789999997765 4 78999999944 4433222
Q ss_pred hHHHhc----cCCC---------------CccCCCCCCchHHHHHHHcC--CHHHHHHHHHCCCCCcccchhhhhhchhh
Q 004266 76 PSLQRN----MSNP---------------TETMKSDHSFSRLLELAADN--DVEGFKQCICDTSAICEVGLWYSFQRLSK 134 (765)
Q Consensus 76 ~~Ll~~----~~~l---------------~~~~~d~~G~TpLh~Aa~~G--~~e~Vk~LLe~gadvn~~~L~~a~~~g~~ 134 (765)
..|+.. +..+ ..+..+.+|.||||+|+..| +.++|++||+.|++++..
T Consensus 101 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~----------- 169 (364)
T 3ljn_A 101 VALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK----------- 169 (364)
T ss_dssp HHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC-----------
T ss_pred HHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc-----------
Confidence 222222 1111 01237788999999999999 999999999999999998
Q ss_pred hccCCCChHHHHHHHcCCHHHHHHHHhcCCCC-----cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCC
Q 004266 135 KIVLQHRTPLMVAAEYGSVDVVKLILSLTKAD-----VNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDA 209 (765)
Q Consensus 135 ~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAd-----VN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~ 209 (765)
+..|+||||+|+..|+.++|++||++ |++ +|.. +..|+||||+|+..|+ .++|++||++|+|+|.+|.
T Consensus 170 --d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~gad~~~~d~ 242 (364)
T 3ljn_A 170 --DKADETPLMRAMEFRNREALDLMMDT-VPSKSSLRLDYA-NKQGNSHLHWAILINW---EDVAMRFVEMGIDVNMEDN 242 (364)
T ss_dssp --CTTSCCHHHHHHHTTCHHHHHHHHHH-CSCSSSCCTTCC-CTTCCCTTHHHHTTTC---HHHHHHHHTTTCCTTCCCT
T ss_pred --CCCCCCHHHHHHHcCCHHHHHHHHhc-cccccccccccc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCCCC
Confidence 89999999999999999999999999 998 9999 9999999999999999 9999999999999999999
Q ss_pred CCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCc
Q 004266 210 HGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEY 289 (765)
Q Consensus 210 ~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~y 289 (765)
.|+||||+|+.. +..+++++||++|++++..+.... .......+..|.|||+.|+..++.
T Consensus 243 ~g~tpL~~A~~~----g~~~~v~~Ll~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~aa~~~~~ 302 (364)
T 3ljn_A 243 EHTVPLYLSVRA----AMVLLTKELLQKTDVFLIQACPYH----------------NGTTVLPDRVVWLDFVPAAADPSK 302 (364)
T ss_dssp TSCCHHHHHHHT----CCHHHHHHHHHHSCHHHHHTCTTB----------------SSSSBCGGGCCCCTTSCSSCCHHH
T ss_pred CCCCHHHHHHHh----ChHHHHHHHHHcCCchhhhcCccc----------------CcccccccccccccchhhhhccCH
Confidence 999999999999 567799999999998753321111 111225788899999999998876
Q ss_pred CC
Q 004266 290 PI 291 (765)
Q Consensus 290 pv 291 (765)
.+
T Consensus 303 ~~ 304 (364)
T 3ljn_A 303 QE 304 (364)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 31
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=1.5e-29 Score=261.41 Aligned_cols=195 Identities=21% Similarity=0.226 Sum_probs=157.9
Q ss_pred CcccCCCCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChh
Q 004266 5 PAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKP 76 (765)
Q Consensus 5 p~vt~~ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~ 76 (765)
++..+.+|.||||+| +++|+++|++++..|. .|+||||+|+. .+.+.+ ..
T Consensus 65 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~-~~~~~~-------------------~~ 122 (285)
T 1wdy_A 65 PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDF--YGFTAFMEAAV-YGKVKA-------------------LK 122 (285)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT--TCCBHHHHHHH-TTCHHH-------------------HH
T ss_pred CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCc--ccCCHHHHHHH-hCCHHH-------------------HH
Confidence 344455556666653 3455566666666665 66666666632 221211 13
Q ss_pred HHHhccCCCCccCC----------CCCCchHHHHHHHcCCHHHHHHHHHC-CCCCcccchhhhhhchhhhccCCCChHHH
Q 004266 77 SLQRNMSNPTETMK----------SDHSFSRLLELAADNDVEGFKQCICD-TSAICEVGLWYSFQRLSKKIVLQHRTPLM 145 (765)
Q Consensus 77 ~Ll~~~~~l~~~~~----------d~~G~TpLh~Aa~~G~~e~Vk~LLe~-gadvn~~~L~~a~~~g~~~id~~G~TPLH 145 (765)
.|+..+.++ +.. +..|.||||+|+..|+.+++++|++. |++++.. +..|+||||
T Consensus 123 ~Ll~~g~~~--~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-------------~~~g~t~l~ 187 (285)
T 1wdy_A 123 FLYKRGANV--NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC-------------DNMGRNALI 187 (285)
T ss_dssp HHHHTTCCT--TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCC-------------CTTSCCHHH
T ss_pred HHHHhCCCc--ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCcc-------------CCCCCCHHH
Confidence 455555555 333 77899999999999999999999995 9999998 899999999
Q ss_pred HHHHcCC----HHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHh
Q 004266 146 VAAEYGS----VDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLF-AGADSNLTDAHGNRPFDVIVV 220 (765)
Q Consensus 146 ~Aa~~G~----~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~-~GAdvn~~D~~G~TPLh~Aa~ 220 (765)
+|+..++ .+++++|+++ |+++|.+ +..|.||||+|+..|+ .++|++|++ .|++++.+|..|+||||+|+.
T Consensus 188 ~a~~~~~~~~~~~i~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~ 262 (285)
T 1wdy_A 188 HALLSSDDSDVEAITHLLLDH-GADVNVR-GERGKTPLILAVEKKH---LGLVQRLLEQEHIEINDTDSDGKTALLLAVE 262 (285)
T ss_dssp HHHHCSCTTTHHHHHHHHHHT-TCCSSCC-CTTSCCHHHHHHHTTC---HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHccccchHHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHcCC---HHHHHHHHhccCCCccccCCCCCcHHHHHHH
Confidence 9999999 9999999999 9999999 9999999999999999 999999999 899999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCcc
Q 004266 221 HPNVPDSRVSLEDLLKNGGSVSFDE 245 (765)
Q Consensus 221 ~g~~~~~~~ive~LL~~GAdvn~~n 245 (765)
. +..+++++|+++|++++.+|
T Consensus 263 ~----~~~~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 263 L----KLKKIAELLCKRGASTDCGD 283 (285)
T ss_dssp T----TCHHHHHHHHHHSSCSCCSS
T ss_pred c----CcHHHHHHHHHcCCCCCccc
Confidence 9 56789999999999999665
No 32
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.97 E-value=4.6e-30 Score=265.26 Aligned_cols=187 Identities=19% Similarity=0.111 Sum_probs=165.1
Q ss_pred cccCCCCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhH
Q 004266 6 AVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPS 77 (765)
Q Consensus 6 ~vt~~ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~ 77 (765)
+.++.+|.||||+| +++|+++|++++..|. .|+||||+|+..+. ..+. ..
T Consensus 51 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~-~~~v-------------------~~ 108 (253)
T 1yyh_A 51 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN--MGRTPLHAAVSADA-QGVF-------------------QI 108 (253)
T ss_dssp -CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHHTC-HHHH-------------------HH
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CCCCHHHHHHHcCC-HHHH-------------------HH
Confidence 45688999999995 5789999999999999 99999999954333 3222 44
Q ss_pred HHhccC-CCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHH
Q 004266 78 LQRNMS-NPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVV 156 (765)
Q Consensus 78 Ll~~~~-~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evV 156 (765)
|++.+. .+ +..+..|.||||+|+..|+.+++++|++.|+++|.. +..|+||||+|+..|+.++|
T Consensus 109 Ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-------------d~~g~t~L~~A~~~~~~~~v 173 (253)
T 1yyh_A 109 LIRNRATDL--DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-------------DDLGKSALHWAAAVNNVDAA 173 (253)
T ss_dssp HHHSTTSCT--TCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCB-------------CTTSCBHHHHHHHHTCHHHH
T ss_pred HHHcCCCCc--cccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCc-------------CCCCCCHHHHHHHcCCHHHH
Confidence 554443 44 677899999999999999999999999999999998 88999999999999999999
Q ss_pred HHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHH
Q 004266 157 KLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLK 236 (765)
Q Consensus 157 k~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~ 236 (765)
++||++ |+++|.+ +..|.||||+|+..|+ .++|++|+++|+|++.+|..|+||||+|+.. +..+|+++|..
T Consensus 174 ~~Ll~~-ga~~~~~-~~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~----g~~~i~~~l~~ 244 (253)
T 1yyh_A 174 VVLLKN-GANKDMQ-NNREETPLFLAAREGS---YETAKVLLDHFANRDITDHMDRLPRDIAQER----MHHDIVRLLDL 244 (253)
T ss_dssp HHHHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT----TCHHHHHHHHC
T ss_pred HHHHHc-CCCCCCc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCccccccCCCCHHHHHHHc----CCHHHHHHHHH
Confidence 999999 9999999 9999999999999999 9999999999999999999999999999999 56779999986
Q ss_pred CC
Q 004266 237 NG 238 (765)
Q Consensus 237 ~G 238 (765)
..
T Consensus 245 ~~ 246 (253)
T 1yyh_A 245 EH 246 (253)
T ss_dssp --
T ss_pred Hh
Confidence 54
No 33
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=2.3e-30 Score=263.71 Aligned_cols=192 Identities=17% Similarity=0.144 Sum_probs=159.5
Q ss_pred ccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHH
Q 004266 31 FLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGF 110 (765)
Q Consensus 31 n~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~V 110 (765)
+.+|. +|+||||+|+..+. +.+. +..+ ......+..+ +..+..|.||||+|+..|+.++|
T Consensus 2 ~~~d~--~g~t~L~~A~~~g~-~~~v-----~~Ll----------~~~~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v 61 (236)
T 1ikn_D 2 QQLTE--DGDSFLHLAIIHEE-KALT-----MEVI----------RQVKGDLAFL--NFQNNLQQTPLHLAVITNQPEIA 61 (236)
T ss_dssp -------CCCCTTHHHHHTTC-SSSS-----SCCC----------C-----CCCC--CCCCTTCCCHHHHHHHTTCHHHH
T ss_pred CcCCC--CCCchhHHHHHcCC-hhHH-----HHHH----------HHhhccHHHh--hccCCCCCCHHHHHHHcCCHHHH
Confidence 34677 99999999954433 3221 1111 0111112234 67789999999999999999999
Q ss_pred HHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCC------cccccCCCCCcHHHHHHh
Q 004266 111 KQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKAD------VNLTCGLDKSTALHCAAS 184 (765)
Q Consensus 111 k~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAd------VN~~~d~~G~TpLH~Aa~ 184 (765)
++||+.|++++.. +..|+||||+|+..|+.+++++|++. |++ ++.. +..|.||||+|+.
T Consensus 62 ~~Ll~~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~-~~~g~t~L~~A~~ 126 (236)
T 1ikn_D 62 EALLGAGCDPELR-------------DFRGNTPLHLACEQGCLASVGVLTQS-CTTPHLHSILKAT-NYNGHTCLHLASI 126 (236)
T ss_dssp HCCCSCCCCSCCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHS-TTTTSSSCGGGCC-CTTCCCHHHHHHH
T ss_pred HHHHHcCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhHHHHhhcc-CCCCCCHHHHHHH
Confidence 9999999999998 88999999999999999999999999 776 5677 8899999999999
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCc
Q 004266 185 GGSVNAVDVVKLLLFAGADSNLTDA-HGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSS 263 (765)
Q Consensus 185 ~G~~~~~eiVklLL~~GAdvn~~D~-~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~ 263 (765)
.|+ .++|++||++|++++.+|. .|+||||+|+.. +..+++++|+++|++++
T Consensus 127 ~~~---~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~----~~~~~v~~Ll~~ga~~~--------------------- 178 (236)
T 1ikn_D 127 HGY---LGIVELLVSLGADVNAQEPCNGRTALHLAVDL----QNPDLVSLLLKCGADVN--------------------- 178 (236)
T ss_dssp TTC---HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT----TCHHHHHHHHTTTCCSC---------------------
T ss_pred cCC---HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHcCCCCC---------------------
Confidence 999 9999999999999999998 999999999999 55779999999999999
Q ss_pred CCCCCCcccCCCCCccccccccCCCcCCC
Q 004266 264 DDSSLSSLTCKSDDVHAFVAPEKKEYPID 292 (765)
Q Consensus 264 ~~~~d~n~~dk~G~TPLHlAaekk~ypvd 292 (765)
.+|..|.||||+|+.+++..+.
T Consensus 179 -------~~~~~g~tpl~~A~~~~~~~~~ 200 (236)
T 1ikn_D 179 -------RVTYQGYSPYQLTWGRPSTRIQ 200 (236)
T ss_dssp -------CCCTTCCCGGGGCTTSSCHHHH
T ss_pred -------cccCCCCCHHHHHHccCchHHH
Confidence 7899999999999999987763
No 34
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=6.8e-30 Score=258.82 Aligned_cols=201 Identities=17% Similarity=0.170 Sum_probs=163.7
Q ss_pred CCCcHHHHH--------HHHHHHC-CCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhc
Q 004266 11 NKSSPLKIS--------ISIFQKH-TQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRN 81 (765)
Q Consensus 11 ng~TPLH~A--------V~lLl~~-gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~ 81 (765)
.|+||||+| ++.|++. |+++|.+|. +|+||||+|+. .+.+.+. ..|+..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~--~g~t~L~~A~~-~g~~~~v-------------------~~Ll~~ 59 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGA--MGETALHIAAL-YDNLEAA-------------------MVLMEA 59 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCT--TSCCHHHHHHH-TTCHHHH-------------------HHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCC--CCCCHHHHHHH-cCCHHHH-------------------HHHHHc
Confidence 589999996 4577876 999999999 99999999944 4433222 344444
Q ss_pred cCCCC---ccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHH
Q 004266 82 MSNPT---ETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKL 158 (765)
Q Consensus 82 ~~~l~---~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~ 158 (765)
+.++. ....|.+|.||||+|+..|+.++|++|++.|++++..+-...........+..|.||||+|+..|+.++|++
T Consensus 60 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 139 (232)
T 2rfa_A 60 APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRL 139 (232)
T ss_dssp CGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHH
T ss_pred CchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHH
Confidence 43321 135678999999999999999999999999999988731000001111224589999999999999999999
Q ss_pred HHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHH----HHHHHCCCCC------CCCCCCCCCHHHHHHhCCCCCCHH
Q 004266 159 ILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVV----KLLLFAGADS------NLTDAHGNRPFDVIVVHPNVPDSR 228 (765)
Q Consensus 159 LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiV----klLL~~GAdv------n~~D~~G~TPLh~Aa~~g~~~~~~ 228 (765)
||++ |+|+|.+ |..|+||||+|+..|+ .+++ ++|+++|+++ +.+|..|+||||+|+.. +..
T Consensus 140 Ll~~-ga~~~~~-d~~g~t~L~~A~~~~~---~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~----g~~ 210 (232)
T 2rfa_A 140 LIEH-GADIRAQ-DSLGNTVLHILILQPN---KTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVE----GNI 210 (232)
T ss_dssp HHHT-TCCTTCC-CTTSCCHHHHHHTCSC---HHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHH----TCH
T ss_pred HHHC-CCCCCCC-CCCCCCHHHHHHHcCC---hHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHc----CCH
Confidence 9999 9999999 9999999999999999 8888 9999999998 68999999999999999 567
Q ss_pred HHHHHHHHCCCCCC
Q 004266 229 VSLEDLLKNGGSVS 242 (765)
Q Consensus 229 ~ive~LL~~GAdvn 242 (765)
+++++|+++|++..
T Consensus 211 ~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 211 VMFQHLMQKRKHIA 224 (232)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHhcCccch
Confidence 79999999998776
No 35
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.97 E-value=4.5e-30 Score=260.59 Aligned_cols=191 Identities=24% Similarity=0.171 Sum_probs=171.9
Q ss_pred CCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCccCCCCCCchHHHHHHHcCCH
Q 004266 28 QNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTETMKSDHSFSRLLELAADNDV 107 (765)
Q Consensus 28 AdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~ 107 (765)
.|++..|. +|+||||+|+..+. +.+. ..|++.+.++ +..+.+|.||||+|+..|+.
T Consensus 2 ~~~~~~~~--~g~t~L~~A~~~g~-~~~v-------------------~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~ 57 (237)
T 3b7b_A 2 MNFKMEHQ--NKRSPLHAAAEAGH-VDIC-------------------HMLVQAGANI--DTCSEDQRTPLMEAAENNHL 57 (237)
T ss_dssp CCCCCSSC--CSCCHHHHHHHHTC-HHHH-------------------HHHHHTTCCT--TCCCTTCCCHHHHHHHTTCH
T ss_pred CCcccccC--CCCCHHHHHHHcCc-HHHH-------------------HHHHHcCCCc--CccCCCCCCHHHHHHHhCCH
Confidence 47888899 99999999955443 3222 4566667776 67789999999999999999
Q ss_pred HHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCC
Q 004266 108 EGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGS 187 (765)
Q Consensus 108 e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~ 187 (765)
++|++|++.|++++.. +..|.||||+|+..|+.+++++|++.+.++++.. +..|.||||+|+..|+
T Consensus 58 ~~v~~Ll~~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~ 123 (237)
T 3b7b_A 58 EAVKYLIKAGALVDPK-------------DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ-DDGGWTPMIWATEYKH 123 (237)
T ss_dssp HHHHHHHTTTCCCCCC-------------CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCC-CTTSCCHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCCCC-------------CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccC-CCCCCCHHHHHHHcCC
Confidence 9999999999999998 8899999999999999999999999933999999 9999999999999999
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCcCCCC
Q 004266 188 VNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSS 267 (765)
Q Consensus 188 ~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~ 267 (765)
.+++++|+++|++++.+|..|.||||+|+.. +..+++++|+++|++++
T Consensus 124 ---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~~~~Ll~~g~~~~------------------------- 171 (237)
T 3b7b_A 124 ---VDLVKLLLSKGSDINIRDNEENICLHWAAFS----GCVDIAEILLAAKCDLH------------------------- 171 (237)
T ss_dssp ---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH----CCHHHHHHHHTTTCCTT-------------------------
T ss_pred ---HHHHHHHHHCCCCCCccCCCCCCHHHHHHHC----CCHHHHHHHHHcCCCCC-------------------------
Confidence 9999999999999999999999999999999 55779999999999998
Q ss_pred CCcccCCCCCccccccccCCCcCC
Q 004266 268 LSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 268 d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
.+|..|.||||+|+..+++.+
T Consensus 172 ---~~~~~g~t~L~~A~~~~~~~~ 192 (237)
T 3b7b_A 172 ---AVNIHGDSPLHIAARENRYDC 192 (237)
T ss_dssp ---CCCTTCCCHHHHHHHTTCHHH
T ss_pred ---CcCCCCCCHHHHHHHhCCHhH
Confidence 788999999999999987766
No 36
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.96 E-value=6e-30 Score=259.54 Aligned_cols=190 Identities=21% Similarity=0.238 Sum_probs=164.0
Q ss_pred cCcccCCCCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCCh
Q 004266 4 VPAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSK 75 (765)
Q Consensus 4 vp~vt~~ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~ 75 (765)
..+..+.+|.||||+| +++|+++|++++..|. .|+||||+|+. .+...+.
T Consensus 38 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--~g~t~l~~A~~-~~~~~~~------------------- 95 (241)
T 1k1a_A 38 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR--HGQTAAHLACE-HRSPTCL------------------- 95 (241)
T ss_dssp CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHH-TTCHHHH-------------------
T ss_pred CCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC--CCCCHHHHHHH-cCCHHHH-------------------
Confidence 4567788899999995 5789999999999999 99999999944 4433222
Q ss_pred hHHHhccC----CCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhcc-CCCChHHHHHHHc
Q 004266 76 PSLQRNMS----NPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIV-LQHRTPLMVAAEY 150 (765)
Q Consensus 76 ~~Ll~~~~----~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id-~~G~TPLH~Aa~~ 150 (765)
..|+..+. .+ +..+..|.||||+|+..|+.+++++|++.|++++.. + ..|.||||+|+..
T Consensus 96 ~~Ll~~~~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-------------~~~~g~t~L~~A~~~ 160 (241)
T 1k1a_A 96 RALLDSAAPGTLDL--EARNYDGLTALHVAVNTECQETVQLLLERGADIDAV-------------DIKSGRSPLIHAVEN 160 (241)
T ss_dssp HHHHHHSCTTSCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-------------CTTTCCCHHHHHHHT
T ss_pred HHHHHcCCCccccc--cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-------------cccCCCcHHHHHHHc
Confidence 34454444 33 677889999999999999999999999999999988 5 7899999999999
Q ss_pred CCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHH
Q 004266 151 GSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVS 230 (765)
Q Consensus 151 G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~i 230 (765)
|+.+++++||++ |+++|.+ +..|.||||+|+..|+ .+++++|+++|+|++.+|..|+||||+|+.. +..++
T Consensus 161 ~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~----~~~~i 231 (241)
T 1k1a_A 161 NSLSMVQLLLQH-GANVNAQ-MYSGSSALHSASGRGL---LPLVRTLVRSGADSSLKNCHNDTPLMVARSR----RVIDI 231 (241)
T ss_dssp TCHHHHHHHHHT-TCCTTCB-CTTSCBHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCTTTTCSSH----HHHHH
T ss_pred CCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHhcCCCCCCcCCCCCCHHHHHHhc----CcHHH
Confidence 999999999999 9999999 9999999999999999 9999999999999999999999999999998 77889
Q ss_pred HHHHHHCCC
Q 004266 231 LEDLLKNGG 239 (765)
Q Consensus 231 ve~LL~~GA 239 (765)
++.|++.++
T Consensus 232 ~~~l~~~~a 240 (241)
T 1k1a_A 232 LRGKATRPA 240 (241)
T ss_dssp HTC------
T ss_pred HhhhccCCC
Confidence 999998775
No 37
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=7.6e-30 Score=250.83 Aligned_cols=147 Identities=32% Similarity=0.397 Sum_probs=140.9
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCC
Q 004266 96 SRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDK 175 (765)
Q Consensus 96 TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G 175 (765)
+.|+.||..|++++|++||+.|+|+|.+ |.+|+||||+|+..++.+++++||++ |+|++.+ |.+|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~-------------d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~-d~~g 70 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNAS-------------DSDGRTPLHHAAENGHKEVVKLLISK-GADVNAK-DSDG 70 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhh-ccCC
Confidence 5799999999999999999999999999 89999999999999999999999999 9999999 9999
Q ss_pred CcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccC
Q 004266 176 STALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRS 255 (765)
Q Consensus 176 ~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~ 255 (765)
+||||+|+..|+ .++|++||++|+|+|.+|.+|+||||+|+.. +..+++++||++|++++
T Consensus 71 ~TpLh~A~~~g~---~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~----g~~~~v~~Ll~~gad~~------------- 130 (169)
T 4gpm_A 71 RTPLHHAAENGH---KEVVKLLISKGADVNAKDSDGRTPLHHAAEN----GHKEVVKLLISKGADVN------------- 130 (169)
T ss_dssp CCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCCTT-------------
T ss_pred CCHHHHHHHcCC---HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHcCCCcc-------------
Confidence 999999999999 9999999999999999999999999999999 55779999999999999
Q ss_pred CccccCCcCCCCCCcccCCCCCccccccccCCCcCCC
Q 004266 256 SSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPID 292 (765)
Q Consensus 256 ~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypvd 292 (765)
.+|++|+||||+|++.++..+.
T Consensus 131 ---------------~~d~~G~TpL~~A~~~g~~~iv 152 (169)
T 4gpm_A 131 ---------------TSDSDGRTPLDLAREHGNEEVV 152 (169)
T ss_dssp ---------------CCCTTSCCHHHHHHHTTCHHHH
T ss_pred ---------------ccCCCCCCHHHHHHHcCCHHHH
Confidence 7899999999999999987764
No 38
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=1.7e-29 Score=248.37 Aligned_cols=158 Identities=33% Similarity=0.341 Sum_probs=141.6
Q ss_pred cHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCC
Q 004266 41 TLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAI 120 (765)
Q Consensus 41 TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadv 120 (765)
+.|+.| ++.+.+.++ +.|++.+.++ +.+|.+|.||||+|+..++.+++++|++.|+++
T Consensus 6 ~~L~~A-a~~G~~~~v-------------------~~Ll~~Gadv--n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~ 63 (169)
T 4gpm_A 6 KRLIEA-AENGNKDRV-------------------KDLIENGADV--NASDSDGRTPLHHAAENGHKEVVKLLISKGADV 63 (169)
T ss_dssp HHHHHH-HHTTCHHHH-------------------HHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHH-HHcCCHHHH-------------------HHHHHCCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch
Confidence 468888 555544333 6778788888 889999999999999999999999999999999
Q ss_pred cccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHC
Q 004266 121 CEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFA 200 (765)
Q Consensus 121 n~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~ 200 (765)
+.. +.+|+||||+||..|+.++|++||++ |+|||.+ |.+|+||||+|+..|+ .++|++||++
T Consensus 64 ~~~-------------d~~g~TpLh~A~~~g~~~~v~~Ll~~-gadvn~~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~ 125 (169)
T 4gpm_A 64 NAK-------------DSDGRTPLHHAAENGHKEVVKLLISK-GADVNAK-DSDGRTPLHHAAENGH---KEVVKLLISK 125 (169)
T ss_dssp TCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT
T ss_pred hhh-------------ccCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHc
Confidence 999 89999999999999999999999999 9999999 9999999999999999 9999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCC
Q 004266 201 GADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVS 242 (765)
Q Consensus 201 GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn 242 (765)
|+|++.+|.+|+||||+|+.. +..+++++|+++||+++
T Consensus 126 gad~~~~d~~G~TpL~~A~~~----g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 126 GADVNTSDSDGRTPLDLAREH----GNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp TCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHTC-----
T ss_pred CCCccccCCCCCCHHHHHHHc----CCHHHHHHHHHCCCCcC
Confidence 999999999999999999999 56779999999999998
No 39
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.96 E-value=1e-29 Score=273.01 Aligned_cols=251 Identities=18% Similarity=0.130 Sum_probs=193.3
Q ss_pred CcccC-CCCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCCh
Q 004266 5 PAVTM-RNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSK 75 (765)
Q Consensus 5 p~vt~-~ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~ 75 (765)
++.++ .+|+||||+| |++|+++|++++..|. .+.++++.+....... +.
T Consensus 51 vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~--~~~~~~~~~~~~~~~~-~~------------------- 108 (337)
T 4g8k_A 51 VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK--NGATPFILAAIAGSVK-LL------------------- 108 (337)
T ss_dssp TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TCCCHHHHHHHHTCHH-HH-------------------
T ss_pred CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhcc--CCCchhHHHHhcccch-hh-------------------
Confidence 34444 4599999995 5799999999999999 9999999995533311 11
Q ss_pred hHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHH
Q 004266 76 PSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDV 155 (765)
Q Consensus 76 ~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~ev 155 (765)
..++....++ +..|..|.||||+|+..|+.+++++|++.|++++... .........+..|.||||+||..|+.++
T Consensus 109 ~~~~~~~~~~--~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~---~~~~~~~~~~~~g~T~L~~A~~~g~~~~ 183 (337)
T 4g8k_A 109 KLFLSKGADV--NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR---KTKEDQERLRKGGATALMDAAEKGHVEV 183 (337)
T ss_dssp HHHHTTTCCT--TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC---CCC-----CTTCSCCHHHHHHHHTCHHH
T ss_pred HHhhhccchh--hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhh---ccccccccccCCCCcHHHHHHHCCCHHH
Confidence 2334445555 6789999999999999999999999999999998652 1111122335789999999999999999
Q ss_pred HHHHHhcCCCCcccccCCCCCcHHHHHHhCCCC-CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHH
Q 004266 156 VKLILSLTKADVNLTCGLDKSTALHCAASGGSV-NAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDL 234 (765)
Q Consensus 156 Vk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~-~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~L 234 (765)
|++||++.|+|+|.+ +..|.|+||+++..+.. ...+++++|+++|+|+|.+|..|+||||+|+.. +..+++++|
T Consensus 184 v~~LL~~~gad~n~~-d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~----~~~~~v~~L 258 (337)
T 4g8k_A 184 LKILLDEMGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK----KHLGLVQRL 258 (337)
T ss_dssp HHHHHHHSCCCTTCC-CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHT----TCHHHHHHH
T ss_pred HHHHHhccCCCcCcc-CCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh----hhhHHHHHH
Confidence 999997559999999 99999999988775542 235688999999999999999999999999998 556799999
Q ss_pred HHC-CCCCCCcccccccccccCCc-----cccCCcCCCCCCcccCCCCCccccccccCCCcCCC
Q 004266 235 LKN-GGSVSFDELQVSSVDLRSSS-----SLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPID 292 (765)
Q Consensus 235 L~~-GAdvn~~n~~~~t~~~~~~s-----~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypvd 292 (765)
+.. |++++.+|..|.|+.+.+.. .+...++.+.++| +.||||+|++.++..+.
T Consensus 259 l~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n-----~~~~L~~A~~~~~~~iv 317 (337)
T 4g8k_A 259 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD-----CGDLVMTARRNYDHSLV 317 (337)
T ss_dssp HTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST-----TCCHHHHHHHTTCHHHH
T ss_pred HHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----CCCHHHHHHHcCCHHHH
Confidence 874 89999999998887433221 2222233355555 45699999999987763
No 40
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=8.8e-30 Score=262.57 Aligned_cols=201 Identities=16% Similarity=0.106 Sum_probs=158.6
Q ss_pred CCcHHHHHH------------HHHHHCCCCccc----ccCCCCCCcHHHHHHHh--cCceeccCccccccccCCCCCCCC
Q 004266 12 KSSPLKISI------------SIFQKHTQNVFL----VDFAINDRTLLILLFFQ--NYLIMCGGSEKLSSKALAPSASPP 73 (765)
Q Consensus 12 g~TPLH~AV------------~lLl~~gAdVn~----~D~~~~G~TPLhlA~~~--~~~i~c~~~e~lkl~~~~t~s~~~ 73 (765)
|+||||+|+ ++|+++|+++|. .|. +|+||||+|+.. .+.+.+.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~--~g~t~L~~A~~~~~~g~~~~v----------------- 62 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGS--TGKTCLMKAVLNLQDGVNACI----------------- 62 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTT--TTBCHHHHHHHTCBTTBCTTH-----------------
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCC--CCCCHHHHHHHccccchHHHH-----------------
Confidence 789999965 466679999999 899 999999999443 0333222
Q ss_pred ChhHHHhccCCCC---------ccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHH
Q 004266 74 SKPSLQRNMSNPT---------ETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPL 144 (765)
Q Consensus 74 ~~~~Ll~~~~~l~---------~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPL 144 (765)
+.|+..+.++. ....|..|.||||+|+..|+.++|++||+.|+++|..+-..-........+..|.|||
T Consensus 63 --~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL 140 (256)
T 2etb_A 63 --MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPL 140 (256)
T ss_dssp --HHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHH
T ss_pred --HHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHH
Confidence 44444432221 0134577999999999999999999999999999988200000000000011399999
Q ss_pred HHHHHcCCHHHHHHHHh---cCCCCcccccCCCCCcHHHHHHh--CCCCCHHH-------HHHHHHHCCCCC-------C
Q 004266 145 MVAAEYGSVDVVKLILS---LTKADVNLTCGLDKSTALHCAAS--GGSVNAVD-------VVKLLLFAGADS-------N 205 (765)
Q Consensus 145 H~Aa~~G~~evVk~LL~---~~GAdVN~~~d~~G~TpLH~Aa~--~G~~~~~e-------iVklLL~~GAdv-------n 205 (765)
|+|+..|+.++|++||+ + |+|+|.+ |.+|+||||+|+. .++ .+ +|++|+++|+++ +
T Consensus 141 ~~A~~~~~~~~v~~Ll~~~~~-ga~~n~~-d~~g~TpLh~A~~~~~~~---~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~ 215 (256)
T 2etb_A 141 SLAACTKQWDVVTYLLENPHQ-PASLEAT-DSLGNTVLHALVMIADNS---PENSALVIHMYDGLLQMGARLCPTVQLEE 215 (256)
T ss_dssp HHHHHTTCHHHHHHHHHCSSC-CCCTTCC-CTTSCCHHHHHHHHCCSC---HHHHHHHHHHHHHHHHHHHHHSTTCCGGG
T ss_pred HHHHHcCCHHHHHHHHhcccc-CCCcCcc-CCCCCCHHHHHHHcccCC---chhhHHHHHHHHHHHHcCCCccccccccc
Confidence 99999999999999999 7 9999999 9999999999999 777 88 999999999999 9
Q ss_pred CCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCC
Q 004266 206 LTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVS 242 (765)
Q Consensus 206 ~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn 242 (765)
.+|..|+||||+|+.. +..+++++||++|++..
T Consensus 216 ~~d~~g~tpL~~A~~~----g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 216 ISNHQGLTPLKLAAKE----GKIEIFRHILQREFSGA 248 (256)
T ss_dssp CCCTTSCCHHHHHHHT----TCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHh----CCHHHHHHHHhCCCCCC
Confidence 9999999999999999 56779999999987654
No 41
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=2.3e-29 Score=248.94 Aligned_cols=187 Identities=20% Similarity=0.133 Sum_probs=162.9
Q ss_pred CCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccC-CCCccCCCCCCchHHHHHHHcCCHHHHHHHHHC
Q 004266 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMS-NPTETMKSDHSFSRLLELAADNDVEGFKQCICD 116 (765)
Q Consensus 38 ~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~-~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~ 116 (765)
.+.||||.|+..+. +.+. ..++.... ++ +..|.+|.||||+|+..|+.++|++|++.
T Consensus 4 ~~~~~L~~A~~~g~-~~~v-------------------~~ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 61 (201)
T 3hra_A 4 YEVGALLEAANQRD-TKKV-------------------KEILQDTTYQV--DEVDTEGNTPLNIAVHNNDIEIAKALIDR 61 (201)
T ss_dssp CCTTHHHHHHHTTC-HHHH-------------------HHHHTCTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred ccccHHHHHHHhcc-HHHH-------------------HHHHHcCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 68999999955444 2111 33443332 44 67789999999999999999999999999
Q ss_pred CCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHH
Q 004266 117 TSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKL 196 (765)
Q Consensus 117 gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVkl 196 (765)
|++++.. +..|.||||+|+..|+.+++++||+..+++++.. +..|.||||+|+..|+ .+++++
T Consensus 62 g~~~~~~-------------~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~ 124 (201)
T 3hra_A 62 GADINLQ-------------NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH-NRYGGNALIPAAEKGH---IDNVKL 124 (201)
T ss_dssp TCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCC-CTTSCCSHHHHHHTTC---HHHHHH
T ss_pred CCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHhccCcccccc-cCCCCcHHHHHHHcCC---HHHHHH
Confidence 9999998 8899999999999999999999996658999999 9999999999999999 999999
Q ss_pred HHHCC-CCCCCCCCCCCCHHHHHHhCCC-CCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCC
Q 004266 197 LLFAG-ADSNLTDAHGNRPFDVIVVHPN-VPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCK 274 (765)
Q Consensus 197 LL~~G-Advn~~D~~G~TPLh~Aa~~g~-~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk 274 (765)
|+++| ++++.+|..|+||||+|+..++ .....+++++|+++|++++ .+|.
T Consensus 125 Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~----------------------------~~~~ 176 (201)
T 3hra_A 125 LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS----------------------------IKDN 176 (201)
T ss_dssp HHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT----------------------------CCCT
T ss_pred HHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC----------------------------ccCC
Confidence 99999 9999999999999999999854 2224889999999999999 7899
Q ss_pred CCCccccccccCCCcCC
Q 004266 275 SDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 275 ~G~TPLHlAaekk~ypv 291 (765)
.|.||||+|+++++..+
T Consensus 177 ~g~t~l~~A~~~~~~~~ 193 (201)
T 3hra_A 177 SGRTAMDYANQKGYTEI 193 (201)
T ss_dssp TSCCHHHHHHHHTCHHH
T ss_pred CCCCHHHHHHHcCCHhH
Confidence 99999999999887755
No 42
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.96 E-value=1.2e-29 Score=268.13 Aligned_cols=192 Identities=13% Similarity=0.007 Sum_probs=170.0
Q ss_pred CcccCCCCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChh
Q 004266 5 PAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKP 76 (765)
Q Consensus 5 p~vt~~ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~ 76 (765)
++..+.+|.||||+| +++|+++|+++|..| |+||||+| +..+.+.+. .
T Consensus 24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----g~t~L~~A-~~~g~~~~v-------------------~ 79 (285)
T 3kea_A 24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE----NEFPLHQA-ATLEDTKIV-------------------K 79 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT----TCCHHHHH-TTSSSCHHH-------------------H
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC----CCCHHHHH-HHcCCHHHH-------------------H
Confidence 467889999999995 568999999999874 79999999 544434332 5
Q ss_pred HHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCC-ChHHHHHHHcCCHHH
Q 004266 77 SLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQH-RTPLMVAAEYGSVDV 155 (765)
Q Consensus 77 ~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G-~TPLH~Aa~~G~~ev 155 (765)
.|+..+.++ +..|..|.||||+|+..|+.++|++|++.|++++.. +..| .||||+|+..|+.++
T Consensus 80 ~Ll~~ga~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-------------~~~g~~t~L~~A~~~~~~~~ 144 (285)
T 3kea_A 80 ILLFSGLDD--SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY-------------GKTGWKTSFYHAVMLNDVSI 144 (285)
T ss_dssp HHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC-------------SSSGGGSHHHHHHHTTCHHH
T ss_pred HHHHCCCCC--CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCcc-------------CCCCCCCHHHHHHHcCCHHH
Confidence 677777777 778999999999999999999999999999999988 7888 899999999999999
Q ss_pred HHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCH-HHHHHhCCCCCCHHHHHHHH
Q 004266 156 VKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRP-FDVIVVHPNVPDSRVSLEDL 234 (765)
Q Consensus 156 Vk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TP-Lh~Aa~~g~~~~~~~ive~L 234 (765)
+++||++ |+++... ..|.||||+|+..|+ .++|++|+++|+|+|.+|..|+|| ||+|+.. +..+++++|
T Consensus 145 v~~Ll~~-g~~~~~~--~~g~t~L~~A~~~g~---~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~----~~~~~v~~L 214 (285)
T 3kea_A 145 VSYFLSE-IPSTFDL--AILLSCIHITIKNGH---VDMMILLLDYMTSTNTNNSLLFIPDIKLAIDN----KDIEMLQAL 214 (285)
T ss_dssp HHHHHTT-SCTTCCC--STHHHHHHHHHHTTC---HHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHH----TCHHHHHHH
T ss_pred HHHHHhC-CCccccc--cCCccHHHHHHHcCh---HHHHHHHHHcCCCCCcccCCCCChHHHHHHHc----CCHHHHHHH
Confidence 9999999 8887432 389999999999999 999999999999999999999998 9999998 567899999
Q ss_pred HHCCCCCCCcc
Q 004266 235 LKNGGSVSFDE 245 (765)
Q Consensus 235 L~~GAdvn~~n 245 (765)
+++|++++..|
T Consensus 215 l~~gad~~~~~ 225 (285)
T 3kea_A 215 FKYDINIYSAN 225 (285)
T ss_dssp TTSCBCSTTTT
T ss_pred HHcCCCCCCCC
Confidence 99999999655
No 43
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=3.7e-30 Score=265.43 Aligned_cols=207 Identities=19% Similarity=0.119 Sum_probs=162.1
Q ss_pred CCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCccC----CCCCCchHHHHHHHc---CCHHHH
Q 004266 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTETM----KSDHSFSRLLELAAD---NDVEGF 110 (765)
Q Consensus 38 ~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~~----~d~~G~TpLh~Aa~~---G~~e~V 110 (765)
.|+||||.|+..+. +.+. +.. .+.++..+.++ +. .|.+|.||||+|+.. |+.++|
T Consensus 1 ~G~t~L~~A~~~g~-~~~v-----~~l----------l~~l~~~g~~i--~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v 62 (256)
T 2etb_A 1 FDRDRLFSVVSRGV-PEEL-----TGL----------LEYLRWNSKYL--TDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62 (256)
T ss_dssp CCHHHHHHHHHHTC-GGGG-----TTH----------HHHHHHHTCCT--TSGGGSBTTTTBCHHHHHHHTCBTTBCTTH
T ss_pred CCccHHHHHHHcCC-HHHH-----HHH----------HHHHHHcCCCc--ccccccCCCCCCCHHHHHHHccccchHHHH
Confidence 38999999955444 3221 110 13344456666 44 689999999999999 999999
Q ss_pred HHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCC-------------CCc
Q 004266 111 KQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLD-------------KST 177 (765)
Q Consensus 111 k~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~-------------G~T 177 (765)
++||+.|++++...... .......+..|.||||+||..|+.++|++||++ |+++|.+ +.. |.|
T Consensus 63 ~~Ll~~g~~~~~~~~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~-~~~~~~~~~~~~~~~~g~t 138 (256)
T 2etb_A 63 MPLLQIDKDSGNPKPLV--NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN-GADVHLR-ACGRFFQKHQGTCFYFGEL 138 (256)
T ss_dssp HHHHHHHHHTTCSSCGG--GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CCSGGGSCCSSSCCCSCSS
T ss_pred HHHHhcCCcccchhhhc--ccccccccccCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-cccccccccccccccCCCC
Confidence 99999888876442000 001111246799999999999999999999999 9999999 665 999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHH---CCCCCCCCCCCCCCHHHHHHhCCCCCCHHH-------HHHHHHHCCCCCCCcccc
Q 004266 178 ALHCAASGGSVNAVDVVKLLLF---AGADSNLTDAHGNRPFDVIVVHPNVPDSRV-------SLEDLLKNGGSVSFDELQ 247 (765)
Q Consensus 178 pLH~Aa~~G~~~~~eiVklLL~---~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~-------ive~LL~~GAdvn~~n~~ 247 (765)
|||+|+..|+ .++|++||+ +|+|+|.+|..|+||||+|+..++ +..+ ++++|+++|++++...
T Consensus 139 pL~~A~~~~~---~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~--~~~~~~~~~~~iv~~Ll~~ga~~~~~~-- 211 (256)
T 2etb_A 139 PLSLAACTKQ---WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD--NSPENSALVIHMYDGLLQMGARLCPTV-- 211 (256)
T ss_dssp HHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHHHHHSTTC--
T ss_pred HHHHHHHcCC---HHHHHHHHhccccCCCcCccCCCCCCHHHHHHHccc--CCchhhHHHHHHHHHHHHcCCCccccc--
Confidence 9999999999 999999999 999999999999999999998322 4455 9999999999984100
Q ss_pred cccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCCC
Q 004266 248 VSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPID 292 (765)
Q Consensus 248 ~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypvd 292 (765)
...+.+|..|+||||+|+++++..+.
T Consensus 212 -------------------~~~~~~d~~g~tpL~~A~~~g~~~~v 237 (256)
T 2etb_A 212 -------------------QLEEISNHQGLTPLKLAAKEGKIEIF 237 (256)
T ss_dssp -------------------CGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred -------------------ccccccCCCCCCHHHHHHHhCCHHHH
Confidence 00137899999999999999988763
No 44
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=6.1e-30 Score=266.61 Aligned_cols=216 Identities=16% Similarity=0.098 Sum_probs=160.8
Q ss_pred CCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHh----ccCCCCcc--CCCCCCchHHH
Q 004266 26 HTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQR----NMSNPTET--MKSDHSFSRLL 99 (765)
Q Consensus 26 ~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~----~~~~l~~~--~~d~~G~TpLh 99 (765)
.++..+..|. .|+||||.|+. .+.+.+. ..|++ ....+... ..+..|.||||
T Consensus 2 ~~a~~~~~d~--~g~t~L~~A~~-~g~~~~v-------------------~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~ 59 (273)
T 2pnn_A 2 VSAGEKPPRL--YDRRSIFDAVA-QSNCQEL-------------------ESLLPFLQRSKKRLTDSEFKDPETGKTCLL 59 (273)
T ss_dssp ---------C--CCHHHHHHHHH-TTCSSTT-------------------TTHHHHHHHSCCCTTSGGGSCTTTCCCHHH
T ss_pred CcccCCCCCc--ccchHHHHHHH-cCCHHHH-------------------HHHHHHHhhcccccCCcccccCcCCCCHHH
Confidence 3566778888 99999999944 4433222 22332 23333111 45889999999
Q ss_pred HHHHc---CCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCC---
Q 004266 100 ELAAD---NDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGL--- 173 (765)
Q Consensus 100 ~Aa~~---G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~--- 173 (765)
+||.. |+.++|++||+.|++++..... ...+....+..|+||||+||..|+.++|++||++ |+++|.+ +.
T Consensus 60 ~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~--i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~-~~~~~ 135 (273)
T 2pnn_A 60 KAMLNLHNGQNDTIALLLDVARKTDSLKQF--VNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAA-ANGDF 135 (273)
T ss_dssp HHHHSCBTTBCHHHHHHHHHHHHTTCHHHH--HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-BCSGG
T ss_pred HHHHHHhcCChHHHHHHHHhhccccchhHH--hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCcc-ccccc
Confidence 99987 9999999999988764432100 0011112256899999999999999999999999 9999999 65
Q ss_pred -----------CCCcHHHHHHhCCCCCHHHHHHHHHH---CCCCCCCCCCCCCCHHHHHHhCCCCCC-----HHHHHHHH
Q 004266 174 -----------DKSTALHCAASGGSVNAVDVVKLLLF---AGADSNLTDAHGNRPFDVIVVHPNVPD-----SRVSLEDL 234 (765)
Q Consensus 174 -----------~G~TpLH~Aa~~G~~~~~eiVklLL~---~GAdvn~~D~~G~TPLh~Aa~~g~~~~-----~~~ive~L 234 (765)
.|.||||+|+..|+ .++|++||+ +|+|+|.+|..|+||||+|+..|+... ..+++++|
T Consensus 136 ~~~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~L 212 (273)
T 2pnn_A 136 FKKTKGRPGFYFGELPLSLAACTNQ---LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEI 212 (273)
T ss_dssp GSSCSSSCCCCSCBSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCHHHHHHHcCC---HHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 79999999999999 999999999 999999999999999999999754211 16799999
Q ss_pred HHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 235 LKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 235 L~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
+++|++++.... .++.+|..|+||||+|++++++.+
T Consensus 213 l~~ga~~n~~~~---------------------~~~~~d~~g~TpL~~A~~~g~~~i 248 (273)
T 2pnn_A 213 LILGAKLHPTLK---------------------LEEITNRKGLTPLALAASSGKIGV 248 (273)
T ss_dssp HHHHHHHCTTCC---------------------GGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHhhhhcccccc---------------------cccccCCCCCCHHHHHHHhChHHH
Confidence 999999872110 123689999999999999998876
No 45
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.96 E-value=7.1e-30 Score=269.83 Aligned_cols=202 Identities=14% Similarity=0.016 Sum_probs=171.5
Q ss_pred HHHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCccCCCCCCchHH
Q 004266 19 SISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTETMKSDHSFSRL 98 (765)
Q Consensus 19 AV~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~~~d~~G~TpL 98 (765)
.+++|.++ ++|..|. +|+||||+|+. .+.+.+. ..|+..+.++ +.. +|.|||
T Consensus 15 v~~lL~~~--~~~~~d~--~g~t~L~~A~~-~g~~~~v-------------------~~Ll~~g~~~--~~~--~g~t~L 66 (285)
T 3kea_A 15 LKSFLSSK--DTFKADV--HGHSASYYAIA-DNNVRLV-------------------CTLLNAGALK--NLL--ENEFPL 66 (285)
T ss_dssp HHHHHHST--TTTCCCT--TSCCHHHHHHH-TTCHHHH-------------------HHHHHTTGGG--SCC--TTCCHH
T ss_pred HHHHHHhC--CCCccCC--CCCCHHHHHHH-cCCHHHH-------------------HHHHhCCCCC--CCC--CCCCHH
Confidence 45566654 6899999 99999999944 4433222 4566665555 333 599999
Q ss_pred HHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCC-Cc
Q 004266 99 LELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDK-ST 177 (765)
Q Consensus 99 h~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G-~T 177 (765)
|+|+..|+.++|++|++.|++++.. +..|+||||+|+..|+.++|++||++ |++++.+ +..| .|
T Consensus 67 ~~A~~~g~~~~v~~Ll~~ga~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~-~~~g~~t 131 (285)
T 3kea_A 67 HQAATLEDTKIVKILLFSGLDDSQF-------------DDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFY-GKTGWKT 131 (285)
T ss_dssp HHHTTSSSCHHHHHHHHTTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGC-SSSGGGS
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCc-------------CCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCcc-CCCCCCC
Confidence 9999999999999999999999998 88999999999999999999999999 9999999 8888 89
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCc
Q 004266 178 ALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSS 257 (765)
Q Consensus 178 pLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s 257 (765)
|||+|+..|+ .+++++|+++|+++... ..|.||||+|+.. +..+++++|+++|++++
T Consensus 132 ~L~~A~~~~~---~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~----g~~~~v~~Ll~~gad~n--------------- 188 (285)
T 3kea_A 132 SFYHAVMLND---VSIVSYFLSEIPSTFDL-AILLSCIHITIKN----GHVDMMILLLDYMTSTN--------------- 188 (285)
T ss_dssp HHHHHHHTTC---HHHHHHHHTTSCTTCCC-STHHHHHHHHHHT----TCHHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCC---HHHHHHHHhCCCccccc-cCCccHHHHHHHc----ChHHHHHHHHHcCCCCC---------------
Confidence 9999999999 99999999999988333 2899999999999 55779999999999999
Q ss_pred cccCCcCCCCCCcccCCCCCcc-ccccccCCCcCCCCCCCCcc
Q 004266 258 SLSSSSDDSSLSSLTCKSDDVH-AFVAPEKKEYPIDPSLPDIK 299 (765)
Q Consensus 258 ~l~~a~~~~~d~n~~dk~G~TP-LHlAaekk~ypvdp~LpDi~ 299 (765)
.+|..|.|| ||+|++.++..+...|.+.+
T Consensus 189 -------------~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g 218 (285)
T 3kea_A 189 -------------TNNSLLFIPDIKLAIDNKDIEMLQALFKYD 218 (285)
T ss_dssp -------------TTCCCBCCTTHHHHHHHTCHHHHHHHTTSC
T ss_pred -------------cccCCCCChHHHHHHHcCCHHHHHHHHHcC
Confidence 788999998 99999999877644444433
No 46
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.96 E-value=1e-28 Score=248.77 Aligned_cols=182 Identities=18% Similarity=0.080 Sum_probs=156.6
Q ss_pred CCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCC
Q 004266 39 DRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTS 118 (765)
Q Consensus 39 G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~ga 118 (765)
|+||||+|+. .+.+.+. ..+++.+... ....|.+|.||||+|+..|+.+++++|++.|+
T Consensus 2 g~t~L~~A~~-~g~~~~v-------------------~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 60 (228)
T 2dzn_A 2 SNYPLHQACM-ENEFFKV-------------------QELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60 (228)
T ss_dssp -CCHHHHHHH-TTCHHHH-------------------HHHHHHCGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCT
T ss_pred CccHHHHHHH-hCCHHHH-------------------HHHHhcCccc-cccCCCCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 7899999944 4433222 3444443332 13478999999999999999999999999984
Q ss_pred --CCcc-cchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCC--CCcccccCCCCCcHHHHHHhCCCCCHHHH
Q 004266 119 --AICE-VGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTK--ADVNLTCGLDKSTALHCAASGGSVNAVDV 193 (765)
Q Consensus 119 --dvn~-~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~G--AdVN~~~d~~G~TpLH~Aa~~G~~~~~ei 193 (765)
+++. . +..|.||||+|+..|+.+++++|+++ | ++++.. +..|.||||+|+..|+ .++
T Consensus 61 ~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~-~~~g~t~L~~A~~~~~---~~~ 122 (228)
T 2dzn_A 61 NVNLDDYP-------------DDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKI-TNQGVTCLHLAVGKKW---FEV 122 (228)
T ss_dssp TCCGGGCC-------------CTTSCCHHHHHHHHCCHHHHHHHHSS-SSCCCTTCC-CTTCCCHHHHHHHTTC---HHH
T ss_pred cccccccC-------------CCCCCCHHHHHHHcCCHHHHHHHHhC-CCCcccccC-CcCCCCHHHHHHHcCC---HhH
Confidence 4444 3 78999999999999999999999999 7 999999 9999999999999999 999
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCC-CCCCCcccccccccccCCccccCCcCCCCCCccc
Q 004266 194 VKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNG-GSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLT 272 (765)
Q Consensus 194 VklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~G-Advn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~ 272 (765)
+++|+++|++++.+|..|+||||+|+.. +..+++++|+++| ++++ .+
T Consensus 123 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~~~~----------------------------~~ 170 (228)
T 2dzn_A 123 SQFLIENGASVRIKDKFNQIPLHRAASV----GSLKLIELLCGLGKSAVN----------------------------WQ 170 (228)
T ss_dssp HHHHHHTTCCSCCCCTTSCCHHHHHHHT----TCHHHHHHHHTTTCCCSC----------------------------CC
T ss_pred HHHHHHcCCCccccCCCCCCHHHHHHHc----CCHHHHHHHHhcCccccc----------------------------Cc
Confidence 9999999999999999999999999999 5677999999999 8888 78
Q ss_pred CCCCCccccccccCCCcCC
Q 004266 273 CKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 273 dk~G~TPLHlAaekk~ypv 291 (765)
|..|+||||+|+..++..+
T Consensus 171 d~~g~t~L~~A~~~~~~~~ 189 (228)
T 2dzn_A 171 DKQGWTPLFHALAEGHGDA 189 (228)
T ss_dssp CTTSCCHHHHHHHTTCHHH
T ss_pred CCCCCCHHHHHHHcCCHHH
Confidence 9999999999999997766
No 47
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=1.4e-29 Score=273.11 Aligned_cols=155 Identities=16% Similarity=0.051 Sum_probs=139.6
Q ss_pred cCCCCccC-CCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCC---HHHHH
Q 004266 82 MSNPTETM-KSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGS---VDVVK 157 (765)
Q Consensus 82 ~~~l~~~~-~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~---~evVk 157 (765)
+.++ +. .|.+|.||||+||..|+.++|++||++|+++|.. +.+|+||||+|+..|+ .++++
T Consensus 120 g~dv--n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~-------------d~~g~TpLh~A~~~g~~~~~~~~~ 184 (327)
T 1sw6_A 120 QLNL--NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG-------------DNMGESCLVKAVKSVNNYDSGTFE 184 (327)
T ss_dssp CCCS--CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBC-------------CTTCCCHHHHHHHSSHHHHTTCHH
T ss_pred CCCc--ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc-------------CCCCCCHHHHHHHhcccccHHHHH
Confidence 4555 56 7999999999999999999999999999999998 8999999999999998 78999
Q ss_pred HHHhcCCCCcccccCCCCCcHHHHHHh----CCCCCHHHHHHHHHHCCC-------------------------------
Q 004266 158 LILSLTKADVNLTCGLDKSTALHCAAS----GGSVNAVDVVKLLLFAGA------------------------------- 202 (765)
Q Consensus 158 ~LL~~~GAdVN~~~d~~G~TpLH~Aa~----~G~~~~~eiVklLL~~GA------------------------------- 202 (765)
.||+...+++|.+ +..|+||||+|+. .|+ .+++++|++.++
T Consensus 185 ~ll~~~~~~~~~~-d~~g~tpLh~A~~~~~~~g~---~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t 260 (327)
T 1sw6_A 185 ALLDYLYPCLILE-DSMNRTILHHIIITSGMTGC---SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD 260 (327)
T ss_dssp HHHHHHGGGGGEE-CTTCCCHHHHHHHHHTSTTC---HHHHHHHHHHHHHHHHHGGGCCEEEC----------------C
T ss_pred HHHHhhhccccCC-CCCCCCHHHHHHHHcccccc---HHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCC
Confidence 9999844889999 9999999999999 889 999999998743
Q ss_pred --------------CCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCcCCCCC
Q 004266 203 --------------DSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSL 268 (765)
Q Consensus 203 --------------dvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d 268 (765)
++|.+|..|+||||+|+.. +..+++++||++|++++
T Consensus 261 ~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~----g~~~~v~~Ll~~Gad~~-------------------------- 310 (327)
T 1sw6_A 261 SILENLDLKWIIANMLNAQDSNGDTCLNIAARL----GNISIVDALLDYGADPF-------------------------- 310 (327)
T ss_dssp HHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHH----CCHHHHHHHHHTTCCTT--------------------------
T ss_pred hhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHcCCCCc--------------------------
Confidence 6888999999999999998 55679999999999999
Q ss_pred CcccCCCCCccccccccCC
Q 004266 269 SSLTCKSDDVHAFVAPEKK 287 (765)
Q Consensus 269 ~n~~dk~G~TPLHlAaekk 287 (765)
++|++|+||||+|+++|
T Consensus 311 --~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 311 --IANKSGLRPVDFGAGLE 327 (327)
T ss_dssp --CCCTTSCCGGGGTCC--
T ss_pred --ccCCCCCCHHHHHHhcC
Confidence 89999999999999864
No 48
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=4.6e-28 Score=239.63 Aligned_cols=186 Identities=24% Similarity=0.152 Sum_probs=161.8
Q ss_pred CCCCcHHHHHH--------HHHHHCC-CCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHh
Q 004266 10 RNKSSPLKISI--------SIFQKHT-QNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQR 80 (765)
Q Consensus 10 ~ng~TPLH~AV--------~lLl~~g-AdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~ 80 (765)
..+.||||.|+ +.|++.+ .++|..|. +|+||||+|+. .+.+.+. ..|++
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~-~~~~~~v-------------------~~Ll~ 60 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT--EGNTPLNIAVH-NNDIEIA-------------------KALID 60 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT--TSCCHHHHHHH-HTCHHHH-------------------HHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCC--CCCCHHHHHHH-cCCHHHH-------------------HHHHH
Confidence 45789999954 4555555 59999999 99999999954 4433232 56677
Q ss_pred ccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHH-CCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHH
Q 004266 81 NMSNPTETMKSDHSFSRLLELAADNDVEGFKQCIC-DTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLI 159 (765)
Q Consensus 81 ~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe-~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~L 159 (765)
.+.++ +..+..|.||||+|+..|+.+++++|++ .+++++.. +..|.||||+|+..|+.+++++|
T Consensus 61 ~g~~~--~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~L 125 (201)
T 3hra_A 61 RGADI--NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH-------------NRYGGNALIPAAEKGHIDNVKLL 125 (201)
T ss_dssp TTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCC-------------CTTSCCSHHHHHHTTCHHHHHHH
T ss_pred cCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccc-------------cCCCCcHHHHHHHcCCHHHHHHH
Confidence 77777 7789999999999999999999999995 88899998 88999999999999999999999
Q ss_pred HhcCC-CCcccccCCCCCcHHHHHHhCCCCC--HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHH
Q 004266 160 LSLTK-ADVNLTCGLDKSTALHCAASGGSVN--AVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLK 236 (765)
Q Consensus 160 L~~~G-AdVN~~~d~~G~TpLH~Aa~~G~~~--~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~ 236 (765)
|++ | +++|.+ +..|.||||+|+..++.. ..+++++|+++|+|++.+|..|+||||+|+.. +..+++++|++
T Consensus 126 l~~-g~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~----~~~~~~~~Ll~ 199 (201)
T 3hra_A 126 LED-GREDIDFQ-NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQK----GYTEISKILAQ 199 (201)
T ss_dssp HHH-CCCCTTCC-CTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH----TCHHHHHHHHT
T ss_pred HHc-CCCCcCCC-CCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc----CCHhHHHHHHh
Confidence 999 6 999999 999999999999987522 27999999999999999999999999999999 66779999999
Q ss_pred CC
Q 004266 237 NG 238 (765)
Q Consensus 237 ~G 238 (765)
+|
T Consensus 200 ~G 201 (201)
T 3hra_A 200 YN 201 (201)
T ss_dssp CC
T ss_pred cC
Confidence 87
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=1.5e-28 Score=256.03 Aligned_cols=212 Identities=12% Similarity=0.048 Sum_probs=156.6
Q ss_pred cCcccCCCCCcHHHHHHH--------HHH----HCCCCcc----cccCCCCCCcHHHHHHHh--cCceeccCcccccccc
Q 004266 4 VPAVTMRNKSSPLKISIS--------IFQ----KHTQNVF----LVDFAINDRTLLILLFFQ--NYLIMCGGSEKLSSKA 65 (765)
Q Consensus 4 vp~vt~~ng~TPLH~AV~--------lLl----~~gAdVn----~~D~~~~G~TPLhlA~~~--~~~i~c~~~e~lkl~~ 65 (765)
-....+.+|+||||+|++ .|+ +.+++++ ..|. .|+||||+|+.. .+.+.+.
T Consensus 5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~--~g~tpL~~A~~~~~~g~~~~v--------- 73 (273)
T 2pnn_A 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPE--TGKTCLLKAMLNLHNGQNDTI--------- 73 (273)
T ss_dssp ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTT--TCCCHHHHHHHSCBTTBCHHH---------
T ss_pred cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCc--CCCCHHHHHHHHHhcCChHHH---------
Confidence 345678899999999754 344 4788887 4577 999999999542 1333222
Q ss_pred CCCCCCCCChhHHHhccCC---------CCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccch-hhhhhchhhh
Q 004266 66 LAPSASPPSKPSLQRNMSN---------PTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGL-WYSFQRLSKK 135 (765)
Q Consensus 66 ~~t~s~~~~~~~Ll~~~~~---------l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L-~~a~~~g~~~ 135 (765)
+.|+..+.+ ......|..|.||||+|+..|+.++|++||+.|++++..+- .+........
T Consensus 74 ----------~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~ 143 (273)
T 2pnn_A 74 ----------ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRP 143 (273)
T ss_dssp ----------HHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSC
T ss_pred ----------HHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccc
Confidence 334433221 11123567899999999999999999999999999998820 0000000000
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHh---cCCCCcccccCCCCCcHHHHHHhCCCCCH------HHHHHHHHHCCCCCC-
Q 004266 136 IVLQHRTPLMVAAEYGSVDVVKLILS---LTKADVNLTCGLDKSTALHCAASGGSVNA------VDVVKLLLFAGADSN- 205 (765)
Q Consensus 136 id~~G~TPLH~Aa~~G~~evVk~LL~---~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~------~eiVklLL~~GAdvn- 205 (765)
.+..|.||||+|+..|+.++|++||+ + |+|+|.+ |.+|+||||+|+..|+... .+++++||++|+++|
T Consensus 144 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~-gad~~~~-d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~ 221 (273)
T 2pnn_A 144 GFYFGELPLSLAACTNQLAIVKFLLQNSWQ-PADISAR-DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP 221 (273)
T ss_dssp CCCSCBSHHHHHHHTTCHHHHHHHHHCSSC-CCCTTCC-CTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhcccC-CCCceee-CCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccc
Confidence 11379999999999999999999999 7 9999999 9999999999999886322 589999999999997
Q ss_pred ------CCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCC-CCC
Q 004266 206 ------LTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGG-SVS 242 (765)
Q Consensus 206 ------~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GA-dvn 242 (765)
.+|..|+||||+|+.. +..+++++||++|+ |..
T Consensus 222 ~~~~~~~~d~~g~TpL~~A~~~----g~~~iv~~Ll~~ga~dp~ 261 (273)
T 2pnn_A 222 TLKLEEITNRKGLTPLALAASS----GKIGVLAYILQREIHEPE 261 (273)
T ss_dssp TCCGGGCCCTTSCCHHHHHHHT----TCHHHHHHHHHHHTC---
T ss_pred ccccccccCCCCCCHHHHHHHh----ChHHHHHHHHHCCCCCch
Confidence 4999999999999999 56779999999999 555
No 50
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=5.4e-29 Score=255.70 Aligned_cols=183 Identities=16% Similarity=0.073 Sum_probs=162.2
Q ss_pred cCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCc
Q 004266 88 TMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADV 167 (765)
Q Consensus 88 ~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdV 167 (765)
+..+.++.|+||+||..|+.++|++||+.|+++|.. +..|+||||+||..|+.++|++||++ |+|+
T Consensus 15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-------------d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~ 80 (229)
T 2vge_A 15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP-------------NEEGITALHNAICGANYSIVDFLITA-GANV 80 (229)
T ss_dssp CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCT
T ss_pred cccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCC
Confidence 355778899999999999999999999999999998 89999999999999999999999999 9999
Q ss_pred ccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CCCCCHHHHH--HhCCCCCCHHHHHHHHHHCCCCCCCc
Q 004266 168 NLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTD-AHGNRPFDVI--VVHPNVPDSRVSLEDLLKNGGSVSFD 244 (765)
Q Consensus 168 N~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D-~~G~TPLh~A--a~~g~~~~~~~ive~LL~~GAdvn~~ 244 (765)
|.+ |..|+||||+|+..|+ .++|++||++|++++.+| ..|+||||+| +.. +..+++++|+++|++++..
T Consensus 81 n~~-d~~g~tpLh~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~----~~~~~v~~Ll~~ga~~~~~ 152 (229)
T 2vge_A 81 NSP-DSHGWTPLHCAASCND---TVICMALVQHGAAIFATTLSDGATAFEKCDPYRE----GYADCATYLADVEQSMGLM 152 (229)
T ss_dssp TCC-CTTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTST----THHHHHHHHHHHHHHTTTS
T ss_pred CCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhc----ChHHHHHHHHHcCCCcccc
Confidence 999 9999999999999999 999999999999999997 6999999999 777 7788999999999999999
Q ss_pred ccccccccccCCc--cccCCcCCCC--CCcccCCCCCccccccccCCCcCCC
Q 004266 245 ELQVSSVDLRSSS--SLSSSSDDSS--LSSLTCKSDDVHAFVAPEKKEYPID 292 (765)
Q Consensus 245 n~~~~t~~~~~~s--~l~~a~~~~~--d~n~~dk~G~TPLHlAaekk~ypvd 292 (765)
|..+.++...... ......+.+. +++.+|.+|+||||+|+.+|+..+.
T Consensus 153 ~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v 204 (229)
T 2vge_A 153 NSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204 (229)
T ss_dssp GGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEE
T ss_pred cCCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCccee
Confidence 9888777554333 2222233344 4788999999999999999988874
No 51
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.95 E-value=2.7e-28 Score=251.72 Aligned_cols=209 Identities=12% Similarity=0.024 Sum_probs=159.4
Q ss_pred CCCCCcHHHHHHH------------HHHHCCCCcccccCC--CCCCcHHHHHHH--hcCceeccCccccccccCCCCCCC
Q 004266 9 MRNKSSPLKISIS------------IFQKHTQNVFLVDFA--INDRTLLILLFF--QNYLIMCGGSEKLSSKALAPSASP 72 (765)
Q Consensus 9 ~~ng~TPLH~AV~------------lLl~~gAdVn~~D~~--~~G~TPLhlA~~--~~~~i~c~~~e~lkl~~~~t~s~~ 72 (765)
+.-++||||.|++ +|++.+++++..+.. .+|+||||+|+. +.+...+.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v---------------- 65 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI---------------- 65 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHH----------------
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHH----------------
Confidence 3457899999654 445699999988731 279999999942 33433222
Q ss_pred CChhHHHhccCC---------CCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchh-hhhhchhhhccCCCCh
Q 004266 73 PSKPSLQRNMSN---------PTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLW-YSFQRLSKKIVLQHRT 142 (765)
Q Consensus 73 ~~~~~Ll~~~~~---------l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~-~a~~~g~~~id~~G~T 142 (765)
..|+..+.. ......|..|.||||+||..|+.++|++||+.|+++|..+-. +-........+..|+|
T Consensus 66 ---~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~t 142 (260)
T 3jxi_A 66 ---PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGEL 142 (260)
T ss_dssp ---HHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSS
T ss_pred ---HHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCC
Confidence 334433211 111345668999999999999999999999999999988200 0000000000157999
Q ss_pred HHHHHHHcCCHHHHHHHHh---cCCCCcccccCCCCCcHHHHHHhCCCCCH------HHHHHHHHHCCCCC-------CC
Q 004266 143 PLMVAAEYGSVDVVKLILS---LTKADVNLTCGLDKSTALHCAASGGSVNA------VDVVKLLLFAGADS-------NL 206 (765)
Q Consensus 143 PLH~Aa~~G~~evVk~LL~---~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~------~eiVklLL~~GAdv-------n~ 206 (765)
|||+|+..|+.++|++||+ + |+|+|.+ |..|+||||+|+..|+... .+++++||++|+++ +.
T Consensus 143 pL~~A~~~g~~~~v~~Ll~~~~~-ga~~~~~-d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~ 220 (260)
T 3jxi_A 143 PLSLAACTNQPHIVHYLTENGHK-QADLRRQ-DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEAL 220 (260)
T ss_dssp HHHHHHHTTCHHHHHHHHHCSSC-CCCTTCC-CTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGC
T ss_pred HHHHHHHcCCHHHHHHHHhcccc-CCCCccc-CCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhc
Confidence 9999999999999999999 7 9999999 9999999999998776221 48999999999999 78
Q ss_pred CCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCC
Q 004266 207 TDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVS 242 (765)
Q Consensus 207 ~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn 242 (765)
+|..|+||||+|+.. +..+++++||++|++..
T Consensus 221 ~d~~g~tpL~~A~~~----g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 221 LNNDGLSPLMMAAKT----GKIGIFQHIIRREIADA 252 (260)
T ss_dssp CCTTSCCHHHHHHHT----TCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHc----CCHHHHHHHHHhCCCcc
Confidence 999999999999999 56779999999987654
No 52
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=2.5e-28 Score=241.20 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=146.9
Q ss_pred cCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCc
Q 004266 88 TMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADV 167 (765)
Q Consensus 88 ~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdV 167 (765)
+.+|..|.||||+||..|+.++|++|++.|++++.. +..|+||||+|+..|+.++|++|+++ |+++
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~ 94 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK-------------DIEGSTALIWAVKNNRLGIAEKLLSK-GSNV 94 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH-TCCT
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccc-------------cccCccHHHHHHHcCCHHHHHHHHHC-CCCC
Confidence 467999999999999999999999999999999988 88999999999999999999999999 9999
Q ss_pred ccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccc
Q 004266 168 NLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQ 247 (765)
Q Consensus 168 N~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~ 247 (765)
+.+ +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+.. +..+++++|+++|++++
T Consensus 95 ~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~~~----- 161 (192)
T 2rfm_A 95 NTK-DFSGKTPLMWSIIFGY---SEMSYFLLEHGANVNDRNLEGETPLIVASKY----GRSEIVKKLLELGADIS----- 161 (192)
T ss_dssp TCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH----TCHHHHHHHHHTTCCTT-----
T ss_pred CCC-CCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHCCCCCC-----
Confidence 999 9999999999999999 9999999999999999999999999999998 55779999999999999
Q ss_pred cccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 248 VSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 248 ~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
.+|..|.||||+|+..++..+
T Consensus 162 -----------------------~~~~~g~t~l~~A~~~~~~~~ 182 (192)
T 2rfm_A 162 -----------------------ARDLTGLTAEASARIFGRQEV 182 (192)
T ss_dssp -----------------------CBCTTSCBHHHHHHHTTCHHH
T ss_pred -----------------------CcCCCCCCHHHHHHHhCcHHH
Confidence 789999999999999988765
No 53
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.95 E-value=3.1e-27 Score=238.18 Aligned_cols=193 Identities=21% Similarity=0.173 Sum_probs=166.4
Q ss_pred CcccCCCCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChh
Q 004266 5 PAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKP 76 (765)
Q Consensus 5 p~vt~~ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~ 76 (765)
++..+.+|.||||+| +++|+++|++++..+. ..|.||||+|+..+. +.+. .
T Consensus 35 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~t~L~~A~~~~~-~~~v-------------------~ 93 (240)
T 3eu9_A 35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGG-DLNSTPLHWATRQGH-LSMV-------------------V 93 (240)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBT-TTTBCHHHHHHHHTC-HHHH-------------------H
T ss_pred cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcC-CcCCChhHHHHHcCC-HHHH-------------------H
Confidence 456778899999995 5789999999997765 159999999954433 3222 4
Q ss_pred HHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCC-HHH
Q 004266 77 SLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGS-VDV 155 (765)
Q Consensus 77 ~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~-~ev 155 (765)
.|++.+.++ +..+..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++ .++
T Consensus 94 ~Ll~~g~~~--~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-------------~~~g~t~l~~a~~~~~~~~~ 158 (240)
T 3eu9_A 94 QLMKYGADP--SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM-------------DQNGMTPLMWAAYRTHSVDP 158 (240)
T ss_dssp HHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-------------CTTSCCHHHHHHHHCCSSTT
T ss_pred HHHHcCCCC--cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcccc-------------CCCCCcHHHHHHHhCChHHH
Confidence 566666666 677899999999999999999999999999999998 8999999999997776 899
Q ss_pred HHHHHhcCCCCcccccCC-CCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHH
Q 004266 156 VKLILSLTKADVNLTCGL-DKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDL 234 (765)
Q Consensus 156 Vk~LL~~~GAdVN~~~d~-~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~L 234 (765)
+++|++. |++++.. +. .|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+.. +..+++++|
T Consensus 159 ~~~L~~~-~~~~~~~-~~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~----~~~~~v~~L 229 (240)
T 3eu9_A 159 TRLLLTF-NVSVNLG-DKYHKNTALHWAVLAGN---TTVISLLLEAGANVDAQNIKGESALDLAKQR----KNVWMINHL 229 (240)
T ss_dssp HHHHHHT-TCCTTCC-CTTTCCCHHHHHHHHTC---HHHHHHHHHHTCCTTCBCTTSCBHHHHHHHT----TCHHHHHHH
T ss_pred HHHHHhc-CCCcchh-hccCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc----CcHHHHHHH
Confidence 9999999 9999999 65 99999999999999 9999999999999999999999999999999 667799999
Q ss_pred HHCCCCCC
Q 004266 235 LKNGGSVS 242 (765)
Q Consensus 235 L~~GAdvn 242 (765)
++++++..
T Consensus 230 ~~~~~~~~ 237 (240)
T 3eu9_A 230 QEARQAKG 237 (240)
T ss_dssp HHHC----
T ss_pred HHhhhccC
Confidence 99998765
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.95 E-value=1.1e-28 Score=254.58 Aligned_cols=210 Identities=15% Similarity=0.086 Sum_probs=159.4
Q ss_pred CCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCcc--CCCCCCchHHHHHH---HcCCHHHHHH
Q 004266 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTET--MKSDHSFSRLLELA---ADNDVEGFKQ 112 (765)
Q Consensus 38 ~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~--~~d~~G~TpLh~Aa---~~G~~e~Vk~ 112 (765)
.|+|+||.|+..+. +.+. +..+ +.++..+..+... ..+.+|.||||+|+ ..|+.++|++
T Consensus 4 ~~~~~L~~A~~~g~-~~~v-----~~ll----------~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~ 67 (260)
T 3jxi_A 4 FNRPILFDIVSRGS-PDGL-----EGLL----------SFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67 (260)
T ss_dssp CCHHHHHHHHHHTC-GGGG-----TTHH----------HHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHH
T ss_pred chHHHHHHHHHhCC-HHHH-----HHHH----------HHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHH
Confidence 78999999955444 3221 1100 2233345555222 23478999999999 6799999999
Q ss_pred HHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC--------------CCCCcH
Q 004266 113 CICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCG--------------LDKSTA 178 (765)
Q Consensus 113 LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d--------------~~G~Tp 178 (765)
||+.|++++...-. ........+..|+||||+||..|+.++|++||++ |+++|.+ + ..|.||
T Consensus 68 Ll~~g~~~~~~~~~--~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~-~~~~~~~~~~~~~~~~~g~tp 143 (260)
T 3jxi_A 68 LLDIAEKTGNMREF--INSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQ-ARGRFFQPKDEGGYFYFGELP 143 (260)
T ss_dssp HHHHHHHTTCHHHH--HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CEECCCSSSCCCCSCCSCSSH
T ss_pred HHHhcccccchHhh--hcccccccccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcCcc-ccccccCcccccccccCCCCH
Confidence 99987654332100 0001111245899999999999999999999999 9999999 6 689999
Q ss_pred HHHHHhCCCCCHHHHHHHHHH---CCCCCCCCCCCCCCHHHHHHhCCCCC-----CHHHHHHHHHHCCCCCCCccccccc
Q 004266 179 LHCAASGGSVNAVDVVKLLLF---AGADSNLTDAHGNRPFDVIVVHPNVP-----DSRVSLEDLLKNGGSVSFDELQVSS 250 (765)
Q Consensus 179 LH~Aa~~G~~~~~eiVklLL~---~GAdvn~~D~~G~TPLh~Aa~~g~~~-----~~~~ive~LL~~GAdvn~~n~~~~t 250 (765)
||+|+..|+ .++|++||+ +|+|+|.+|..|+||||+|+..++.. ...+++++|+++|++++...
T Consensus 144 L~~A~~~g~---~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~----- 215 (260)
T 3jxi_A 144 LSLAACTNQ---PHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT----- 215 (260)
T ss_dssp HHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTC-----
T ss_pred HHHHHHcCC---HHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccccccc-----
Confidence 999999999 999999999 99999999999999999999864411 12589999999999986211
Q ss_pred ccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 251 VDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 251 ~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
...+.+|+.|.||||+|++.++..+
T Consensus 216 ----------------~~~~~~d~~g~tpL~~A~~~g~~~~ 240 (260)
T 3jxi_A 216 ----------------NLEALLNNDGLSPLMMAAKTGKIGI 240 (260)
T ss_dssp ----------------CGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred ----------------chhhcccCCCCCHHHHHHHcCCHHH
Confidence 0123789999999999999998876
No 55
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=2.2e-27 Score=234.34 Aligned_cols=164 Identities=20% Similarity=0.166 Sum_probs=148.0
Q ss_pred CcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCccCCCCCCchHHHHHHHcCCHH
Q 004266 29 NVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTETMKSDHSFSRLLELAADNDVE 108 (765)
Q Consensus 29 dVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e 108 (765)
.+|.+|. +|+||||+|+..+. +.+. ..|++.+.++ +..+..|.||||+|+..|+.+
T Consensus 27 ~~n~~d~--~g~t~L~~A~~~g~-~~~v-------------------~~Ll~~~~~~--~~~~~~g~t~L~~A~~~~~~~ 82 (192)
T 2rfm_A 27 LRNYRDS--YNRTPLMVACMLGM-ENAI-------------------DKLVENFDKL--EDKDIEGSTALIWAVKNNRLG 82 (192)
T ss_dssp HHTCCCT--TCCCHHHHHHHHTC-GGGH-------------------HHHHHHHCCT--TCCCTTSCCHHHHHHHTTCHH
T ss_pred HHhCcCC--CCCCHHHHHHHcCC-HHHH-------------------HHHHHhcccc--ccccccCccHHHHHHHcCCHH
Confidence 4678899 99999999955443 3222 5566667766 678899999999999999999
Q ss_pred HHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCC
Q 004266 109 GFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSV 188 (765)
Q Consensus 109 ~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~ 188 (765)
+|++|++.|++++.. +..|.||||+|+..|+.+++++|+++ |+++|.+ +..|.||||+|+..|+
T Consensus 83 ~v~~Ll~~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~- 146 (192)
T 2rfm_A 83 IAEKLLSKGSNVNTK-------------DFSGKTPLMWSIIFGYSEMSYFLLEH-GANVNDR-NLEGETPLIVASKYGR- 146 (192)
T ss_dssp HHHHHHHHTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCC-CTTCCCHHHHHHHHTC-
T ss_pred HHHHHHHCCCCCCCC-------------CCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCC-
Confidence 999999999999998 88999999999999999999999999 9999999 9999999999999999
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCC
Q 004266 189 NAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNG 238 (765)
Q Consensus 189 ~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~G 238 (765)
.++|++|+++|++++.+|..|.||||+|+.. +..+++++|+++|
T Consensus 147 --~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~----~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 147 --SEIVKKLLELGADISARDLTGLTAEASARIF----GRQEVIKIFTEVR 190 (192)
T ss_dssp --HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHT----TCHHHHHHHHHHH
T ss_pred --HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh----CcHHHHHHHHhcc
Confidence 9999999999999999999999999999999 5677999999865
No 56
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=2e-27 Score=230.54 Aligned_cols=152 Identities=26% Similarity=0.300 Sum_probs=142.6
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 004266 90 KSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNL 169 (765)
Q Consensus 90 ~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~ 169 (765)
....+.++|++||..|+.++|++|++.|+++|.. +..|.||||+|+..|+.++|++||++ |++++.
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~ 75 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAE-------------DASGWTPLHLAAFNGHLEIVEVLLKN-GADVNA 75 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTC
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCc
Confidence 4566789999999999999999999999999998 88999999999999999999999999 999999
Q ss_pred ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccc
Q 004266 170 TCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVS 249 (765)
Q Consensus 170 ~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~ 249 (765)
. +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+.. +..+++++|+++|++++
T Consensus 76 ~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~~~------- 140 (169)
T 2y1l_E 76 V-DHAGMTPLRLAALFGH---LEIVEVLLKNGADVNANDMEGHTPLHLAAMF----GHLEIVEVLLKNGADVN------- 140 (169)
T ss_dssp C-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCCTT-------
T ss_pred c-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHcCCCCC-------
Confidence 9 9999999999999999 9999999999999999999999999999999 56779999999999998
Q ss_pred cccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 250 SVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 250 t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
.+|..|.||||+|++.++..+
T Consensus 141 ---------------------~~~~~g~t~l~~A~~~~~~~~ 161 (169)
T 2y1l_E 141 ---------------------AQDKFGKTAFDISIDNGNEDL 161 (169)
T ss_dssp ---------------------CCCTTSCCHHHHHHHTTCHHH
T ss_pred ---------------------CcCCCCCCHHHHHHHhCCHHH
Confidence 788999999999999988765
No 57
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=1.1e-27 Score=231.09 Aligned_cols=149 Identities=28% Similarity=0.280 Sum_probs=142.4
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 004266 93 HSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCG 172 (765)
Q Consensus 93 ~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d 172 (765)
.|.||||+|+..|+.++|++|++.|.+++.. +..|+||||+|+..|+.++|++||++ |++++.. +
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~ 66 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHT-------------DEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLL-G 66 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-C
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCC-------------CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCc-C
Confidence 5789999999999999999999999999998 89999999999999999999999999 9999999 9
Q ss_pred CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccc
Q 004266 173 LDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVD 252 (765)
Q Consensus 173 ~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~ 252 (765)
..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+.. +..+++++|+++|++++
T Consensus 67 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~~~---------- 129 (167)
T 3v31_A 67 KGRESALSLACSKGY---TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG----NHVKCVKMLLESGADPT---------- 129 (167)
T ss_dssp TTCCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCCTT----------
T ss_pred CCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHc----CCHHHHHHHHHcCCCCC----------
Confidence 999999999999999 9999999999999999999999999999999 56779999999999998
Q ss_pred ccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 253 LRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 253 ~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
.+|..|.||||+|+..++..+
T Consensus 130 ------------------~~~~~g~t~l~~A~~~~~~~~ 150 (167)
T 3v31_A 130 ------------------IETDSGYNSMDLAVALGYRSV 150 (167)
T ss_dssp ------------------CCCTTSCCHHHHHHHHTCHHH
T ss_pred ------------------CcCCCCCCHHHHHHHcCcHHH
Confidence 789999999999999987765
No 58
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=9.9e-28 Score=246.47 Aligned_cols=188 Identities=16% Similarity=0.075 Sum_probs=143.1
Q ss_pred CCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCC
Q 004266 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDT 117 (765)
Q Consensus 38 ~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~g 117 (765)
.|.||||.|+. .+... ....++..+.++ + .+..|.||||+|+..|+.++|++||+.|
T Consensus 4 ~g~t~L~~a~~-~~~~~-------------------~~~~ll~~g~~~--~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g 60 (239)
T 1ycs_B 4 TGQVSLPPGKR-TNLRK-------------------TGSERIAHGMRV--K-FNPLPLALLLDSSLEGEFDLVQRIIYEV 60 (239)
T ss_dssp --------------------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTT
T ss_pred cccccCchhhh-hhhHH-------------------HHHHHhccCCCc--c-cCchhhHHHHHHHHcCCHHHHHHHHHcC
Confidence 78999999944 33221 114455556666 3 3477899999999999999999999999
Q ss_pred CCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHH
Q 004266 118 SAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLL 197 (765)
Q Consensus 118 advn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklL 197 (765)
+++|.. +..|+||||+||..|+.++|++||++ |+|+|.+ |..|+||||+|+..|+ .++|++|
T Consensus 61 ~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~-d~~g~tpL~~A~~~~~---~~~v~~L 122 (239)
T 1ycs_B 61 DDPSLP-------------NDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAA-DSDGWTPLHCAASCNN---VQVCKFL 122 (239)
T ss_dssp SSCCCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHH
T ss_pred CCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHH
Confidence 999998 89999999999999999999999999 9999999 9999999999999999 9999999
Q ss_pred HHCCCCCCCCCCCCC-CHHHHH--HhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCC
Q 004266 198 LFAGADSNLTDAHGN-RPFDVI--VVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCK 274 (765)
Q Consensus 198 L~~GAdvn~~D~~G~-TPLh~A--a~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk 274 (765)
|++|+|++.+|..|. ||||+| +..|+.+ ++++|+++|++++..+..+... ..+.
T Consensus 123 l~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~----~~~~Ll~~~a~~~~~~~~~~~a-------------------l~d~ 179 (239)
T 1ycs_B 123 VESGAAVFAMTYSDMQTAADKCEEMEEGYTQ----CSQFLYGVQEKMGIMNKGVIYA-------------------LWDY 179 (239)
T ss_dssp HHTTCCTTCCCSSSCCCHHHHCCSSSTTCCC----HHHHHHHHHHHTTTTGGGEEEE-------------------SSCB
T ss_pred HHcCCCcceecCCCCcchHHHHHHhhhccHH----HHHHHHHhhhcccccccceEEE-------------------Eecc
Confidence 999999999998887 999999 6675554 9999999999999776655544 6788
Q ss_pred CCCccccccccCCCc
Q 004266 275 SDDVHAFVAPEKKEY 289 (765)
Q Consensus 275 ~G~TPLHlAaekk~y 289 (765)
.|.+++++|.++|+.
T Consensus 180 ~~~~~~eLa~~~G~~ 194 (239)
T 1ycs_B 180 EPQNDDELPMKEGDC 194 (239)
T ss_dssp CCSSTTBCCBCSSCE
T ss_pred CCCCCCcccccCCCE
Confidence 899999999988863
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=1.7e-27 Score=230.66 Aligned_cols=168 Identities=21% Similarity=0.186 Sum_probs=141.9
Q ss_pred CCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCC-CCccCCCCCCchHHHHHHHcCCHHHHHHHHHCC
Q 004266 39 DRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSN-PTETMKSDHSFSRLLELAADNDVEGFKQCICDT 117 (765)
Q Consensus 39 G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~-l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~g 117 (765)
+.||||.|+..+. +... ..++..+.. + +..+..|.||||+|+..|+.++|++|++.|
T Consensus 2 ~~~~L~~A~~~g~-~~~v-------------------~~ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 59 (172)
T 3v30_A 2 DSLSIHQLAAQGE-LDQL-------------------KEHLRKGDNLV--NKPDERGFTPLIWASAFGEIETVRFLLEWG 59 (172)
T ss_dssp --CCHHHHHHTTC-HHHH-------------------HHHHTTCSGGG--GCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred chhhHHHHHHcCC-HHHH-------------------HHHHHcCcccc--cCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 5789999954433 3211 334433332 3 567899999999999999999999999999
Q ss_pred CCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHH
Q 004266 118 SAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLL 197 (765)
Q Consensus 118 advn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklL 197 (765)
++++.. +..|.||||+|+..|+.++|++|+++ |+++|.+ +..|.||||+|+..|+ .++|++|
T Consensus 60 ~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~L 121 (172)
T 3v30_A 60 ADPHIL-------------AKERESALSLASTGGYTDIVGLLLER-DVDINIY-DWNGGTPLLYAVRGNH---VKCVEAL 121 (172)
T ss_dssp CCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHH
T ss_pred CCchhh-------------cccCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHH
Confidence 999998 88999999999999999999999999 9999999 9999999999999999 9999999
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccc
Q 004266 198 LFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSS 250 (765)
Q Consensus 198 L~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t 250 (765)
+++|++++.+|..|+||||+|+.. +..+++++|+++|+++...+..+.+
T Consensus 122 l~~ga~~~~~~~~g~t~l~~A~~~----~~~~~~~~L~~~~~~~~~~~~~~~~ 170 (172)
T 3v30_A 122 LARGADLTTEADSGYTPMDLAVAL----GYRKVQQVIENHILKLFQSNLVPAD 170 (172)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHH----TCHHHHHHHHHHHHHHSCC------
T ss_pred HHcCCCccccCCCCCCHHHHHHHh----CcHHHHHHHHHHHHHHhcccCCCCC
Confidence 999999999999999999999999 5678999999999998865555444
No 60
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=2.1e-27 Score=226.28 Aligned_cols=147 Identities=22% Similarity=0.261 Sum_probs=138.6
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCC
Q 004266 94 SFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGL 173 (765)
Q Consensus 94 G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~ 173 (765)
..|+||.|+..|+.++|++|++.|++++. +..|.||||+|+..|+.+++++|+++ |++++.+ +.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~--------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~ 65 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFTT--------------DWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDAR-TK 65 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCCC--------------CTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CT
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCCc--------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CC
Confidence 46899999999999999999999988763 67899999999999999999999999 9999999 99
Q ss_pred CCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccc
Q 004266 174 DKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDL 253 (765)
Q Consensus 174 ~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~ 253 (765)
.|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+.. +..+++++|+++|++++
T Consensus 66 ~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~~~----------- 127 (153)
T 1awc_B 66 VDRTPLHMAASEGH---ANIVEVLLKHGADVNAKDMLKMTALHWATEH----NHQEVVELLIKYGADVH----------- 127 (153)
T ss_dssp TCCCHHHHHHHHTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCCTT-----------
T ss_pred CCCCHHHHHHHcCh---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHcCCCcc-----------
Confidence 99999999999999 9999999999999999999999999999999 56779999999999998
Q ss_pred cCCccccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 254 RSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 254 ~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
.+|..|.||||+|+..++..+
T Consensus 128 -----------------~~~~~g~t~l~~A~~~~~~~i 148 (153)
T 1awc_B 128 -----------------TQSKFCKTAFDISIDNGNEDL 148 (153)
T ss_dssp -----------------CCCTTSCCHHHHHHHTTCHHH
T ss_pred -----------------ccCCCCCCHHHHHHHcCCHHH
Confidence 789999999999999988654
No 61
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=4.7e-27 Score=226.08 Aligned_cols=152 Identities=26% Similarity=0.286 Sum_probs=138.9
Q ss_pred CCCCCCchHHHHHHHcCCHHHHHHHHH-CCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCc
Q 004266 89 MKSDHSFSRLLELAADNDVEGFKQCIC-DTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADV 167 (765)
Q Consensus 89 ~~d~~G~TpLh~Aa~~G~~e~Vk~LLe-~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdV 167 (765)
..|.+|.|+||.|+..|+.++|+.|++ .+.+++.. +..|.||||+|+..|+.++|++||++ |+++
T Consensus 3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~ 68 (165)
T 3twr_A 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-------------EGRQSTPLHFAAGYNRVSVVEYLLQH-GADV 68 (165)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-------------TTTCCCHHHHHHHTTCHHHHHHHHHT-TCCT
T ss_pred CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-------------ccCCCCHHHHHHHcChHHHHHHHHhc-CCCC
Confidence 357789999999999999999999999 66777776 78899999999999999999999999 9999
Q ss_pred ccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccc
Q 004266 168 NLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQ 247 (765)
Q Consensus 168 N~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~ 247 (765)
|.+ +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+.. +..+++++|+++|++++
T Consensus 69 ~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~~~----- 135 (165)
T 3twr_A 69 HAK-DKGGLVPLHNACSYGH---YEVAELLVKHGAVVNVADLWKFTPLHEAAAK----GKYEICKLLLQHGADPT----- 135 (165)
T ss_dssp TCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT----TCHHHHHHHHHTTCCTT-----
T ss_pred Ccc-CCCCCCHHHHHHHcCc---HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc----CCHHHHHHHHHcCCCCc-----
Confidence 999 9999999999999999 9999999999999999999999999999999 56779999999999998
Q ss_pred cccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 248 VSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 248 ~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
.+|..|.||||+|.+ ++..+
T Consensus 136 -----------------------~~~~~g~t~l~~a~~-~~~~i 155 (165)
T 3twr_A 136 -----------------------KKNRDGNTPLDLVKD-GDTDI 155 (165)
T ss_dssp -----------------------CCCTTSCCTGGGSCT-TCHHH
T ss_pred -----------------------ccCCCCCChhHhHhc-CChHH
Confidence 789999999999876 55443
No 62
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.94 E-value=2e-27 Score=249.56 Aligned_cols=200 Identities=19% Similarity=0.106 Sum_probs=162.5
Q ss_pred CcccCCCCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChh
Q 004266 5 PAVTMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKP 76 (765)
Q Consensus 5 p~vt~~ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~ 76 (765)
++..+.+|.||||+| +++|+++|+++|..|. .|+||||+|+. .+.+.+. .
T Consensus 66 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~--~g~tpL~~A~~-~g~~~~v-------------------~ 123 (299)
T 1s70_B 66 INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN--EGWIPLHAAAS-CGYLDIA-------------------E 123 (299)
T ss_dssp TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHH-HTCHHHH-------------------H
T ss_pred CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC--CCCcHHHHHHH-cCCHHHH-------------------H
Confidence 566788999999995 5789999999999999 99999999954 4433222 5
Q ss_pred HHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHH-CCCCCcccch------hhhh-------hchhhhccCCCCh
Q 004266 77 SLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCIC-DTSAICEVGL------WYSF-------QRLSKKIVLQHRT 142 (765)
Q Consensus 77 ~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe-~gadvn~~~L------~~a~-------~~g~~~id~~G~T 142 (765)
.|+..+.++ +..+..|.||||+|+..|+.++++.|+. .+.+++.... +... .......+..|.|
T Consensus 124 ~Ll~~g~~~--~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t 201 (299)
T 1s70_B 124 YLISQGAHV--GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGT 201 (299)
T ss_dssp HHHHTTCCT--TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCC
T ss_pred HHHhCCCCC--CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCC
Confidence 566667777 7789999999999999999999999888 7777665320 0000 0001112467999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCC
Q 004266 143 PLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHP 222 (765)
Q Consensus 143 PLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g 222 (765)
|||+||..|+.++|++||++ |+|+|.+ |..|.||||+|+..|+ .++|++||++|+|++.+|..|+||||+|+..
T Consensus 202 ~L~~A~~~g~~~~v~~Ll~~-g~d~~~~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~- 275 (299)
T 1s70_B 202 ALHVAAAKGYTEVLKLLIQA-RYDVNIK-DYDGWTPLHAAAHWGK---EEACRILVENLCDMEAVNKVGQTAFDVADED- 275 (299)
T ss_dssp HHHHHHHHTCHHHHHHHHTT-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-
T ss_pred HHHHHHHCCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHhcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-
Confidence 99999999999999999999 9999999 9999999999999999 9999999999999999999999999999763
Q ss_pred CCCCHHHHHHHHHHCC
Q 004266 223 NVPDSRVSLEDLLKNG 238 (765)
Q Consensus 223 ~~~~~~~ive~LL~~G 238 (765)
..++++.|++..
T Consensus 276 ----~~~~l~~l~~~~ 287 (299)
T 1s70_B 276 ----ILGYLEELQKKQ 287 (299)
T ss_dssp ----GGHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHH
Confidence 344555555543
No 63
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=3.2e-27 Score=225.90 Aligned_cols=149 Identities=23% Similarity=0.215 Sum_probs=139.5
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCccccc
Q 004266 92 DHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTC 171 (765)
Q Consensus 92 ~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~ 171 (765)
+...|+||.|+..|+.++|++|++.|++++.. +..|+||||+|+. |+.+++++|+++ |+++|.+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~-------------~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~- 66 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQ-------------NGFGRTALQVMKL-GNPEIARRLLLR-GANPDLK- 66 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCC-------------CTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCC-
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCCCcccc-------------CccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCC-
Confidence 34679999999999999999999999999998 8899999999999 999999999999 9999999
Q ss_pred CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCC-CCCccccccc
Q 004266 172 GLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGS-VSFDELQVSS 250 (765)
Q Consensus 172 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAd-vn~~n~~~~t 250 (765)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+.. +..+++++|+++|++ ++
T Consensus 67 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~~~~-------- 131 (162)
T 1ihb_A 67 DRTGFAVIHDAARAGF---LDTLQTLLEFQADVNIEDNEGNLPLHLAAKE----GHLRVVEFLVKHTASNVG-------- 131 (162)
T ss_dssp CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHHSCCCTT--------
T ss_pred CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc----CCHHHHHHHHHccCCCCC--------
Confidence 9999999999999999 9999999999999999999999999999999 567799999999998 46
Q ss_pred ccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 251 VDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 251 ~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
.+|..|.||||+|+..++..+
T Consensus 132 --------------------~~~~~g~t~l~~A~~~~~~~~ 152 (162)
T 1ihb_A 132 --------------------HRNHKGDTACDLARLYGRNEV 152 (162)
T ss_dssp --------------------CCCTTSCCHHHHHHHTTCHHH
T ss_pred --------------------CcCCCCCcHHHHHHHcCCHHH
Confidence 789999999999999988765
No 64
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.94 E-value=5.7e-27 Score=227.02 Aligned_cols=148 Identities=24% Similarity=0.329 Sum_probs=138.5
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCC-CcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 004266 94 SFSRLLELAADNDVEGFKQCICDTSA-ICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCG 172 (765)
Q Consensus 94 G~TpLh~Aa~~G~~e~Vk~LLe~gad-vn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d 172 (765)
+.||||.||..|+.++|++||+.+.+ ++.. +..|+||||+||..|+.++|++||++ |+++|.+ +
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~ 66 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-------------DERGFTPLIWASAFGEIETVRFLLEW-GADPHIL-A 66 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCC-C
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhh-c
Confidence 46899999999999999999997766 7777 78999999999999999999999999 9999999 9
Q ss_pred CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccc
Q 004266 173 LDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVD 252 (765)
Q Consensus 173 ~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~ 252 (765)
..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+.. +..+++++|+++|++++
T Consensus 67 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~~~---------- 129 (172)
T 3v30_A 67 KERESALSLASTGGY---TDIVGLLLERDVDINIYDWNGGTPLLYAVRG----NHVKCVEALLARGADLT---------- 129 (172)
T ss_dssp TTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCCTT----------
T ss_pred ccCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHcCCCcc----------
Confidence 999999999999999 9999999999999999999999999999999 56779999999999998
Q ss_pred ccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 253 LRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 253 ~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
.+|..|.||||+|+..++..+
T Consensus 130 ------------------~~~~~g~t~l~~A~~~~~~~~ 150 (172)
T 3v30_A 130 ------------------TEADSGYTPMDLAVALGYRKV 150 (172)
T ss_dssp ------------------CCCTTSCCHHHHHHHHTCHHH
T ss_pred ------------------ccCCCCCCHHHHHHHhCcHHH
Confidence 788999999999999987766
No 65
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=1.2e-26 Score=221.81 Aligned_cols=158 Identities=18% Similarity=0.132 Sum_probs=139.4
Q ss_pred CCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCC
Q 004266 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDT 117 (765)
Q Consensus 38 ~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~g 117 (765)
...||||.|+..+. +.+. ..|++.+.++ +..+..|.||||+|+. |+.++|++|++.|
T Consensus 4 ~~~~~L~~A~~~g~-~~~v-------------------~~Ll~~~~~~--~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g 60 (162)
T 1ihb_A 4 PWGNELASAAARGD-LEQL-------------------TSLLQNNVNV--NAQNGFGRTALQVMKL-GNPEIARRLLLRG 60 (162)
T ss_dssp -CHHHHHHHHHHTC-HHHH-------------------HHHTTSCCCT--TCCCTTSCCHHHHCCS-SCHHHHHHHHHTT
T ss_pred hHhhHHHHHHHcCC-HHHH-------------------HHHHhCCCCc--cccCccCccHHHHHHc-CcHHHHHHHHHcC
Confidence 56799999955443 3222 4455556566 6778999999999999 9999999999999
Q ss_pred CCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHH
Q 004266 118 SAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLL 197 (765)
Q Consensus 118 advn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklL 197 (765)
++++.. +..|.||||+|+..|+.+++++|+++ |+++|.+ +.+|.||||+|+..|+ .+++++|
T Consensus 61 ~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~L 122 (162)
T 1ihb_A 61 ANPDLK-------------DRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIE-DNEGNLPLHLAAKEGH---LRVVEFL 122 (162)
T ss_dssp CCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHH
T ss_pred CCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHH
Confidence 999998 88999999999999999999999999 9999999 9999999999999999 9999999
Q ss_pred HHCCCC-CCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCC
Q 004266 198 LFAGAD-SNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGS 240 (765)
Q Consensus 198 L~~GAd-vn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAd 240 (765)
+++|++ ++.+|..|+||||+|+.. +..+++++|+++|||
T Consensus 123 l~~g~~~~~~~~~~g~t~l~~A~~~----~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 123 VKHTASNVGHRNHKGDTACDLARLY----GRNEVVSLMQANGAG 162 (162)
T ss_dssp HHHSCCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTC--
T ss_pred HHccCCCCCCcCCCCCcHHHHHHHc----CCHHHHHHHHHhCCC
Confidence 999998 699999999999999999 567799999999986
No 66
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=1.2e-26 Score=223.62 Aligned_cols=161 Identities=19% Similarity=0.179 Sum_probs=144.2
Q ss_pred CCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCC
Q 004266 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDT 117 (765)
Q Consensus 38 ~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~g 117 (765)
.|.||||.|+. .+.+.+. ..+++.+..+ +..|..|.||||+|+..|+.++|++|++.|
T Consensus 2 ~~~t~L~~A~~-~g~~~~v-------------------~~ll~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 59 (167)
T 3v31_A 2 ANSLSVHQLAA-QGEMLYL-------------------ATRIEQENVI--NHTDEEGFTPLMWAAAHGQIAVVEFLLQNG 59 (167)
T ss_dssp TTCCCHHHHHH-TTCHHHH-------------------HHHHHHSSCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCcchHHHHHH-CCCHHHH-------------------HHHHHcCCCc--CCCCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 68999999944 4433222 4555556666 778999999999999999999999999999
Q ss_pred CCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHH
Q 004266 118 SAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLL 197 (765)
Q Consensus 118 advn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklL 197 (765)
++++.. +..|.||||+|+..|+.+++++|+++ |+++|.+ +..|.||||+|+..|+ .+++++|
T Consensus 60 ~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~L 121 (167)
T 3v31_A 60 ADPQLL-------------GKGRESALSLACSKGYTDIVKMLLDC-GVDVNEY-DWNGGTPLLYAVHGNH---VKCVKML 121 (167)
T ss_dssp CCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHH
T ss_pred CCCCCc-------------CCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCcC-CCCCCCHHHHHHHcCC---HHHHHHH
Confidence 999998 88999999999999999999999999 9999999 9999999999999999 9999999
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCC
Q 004266 198 LFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVS 242 (765)
Q Consensus 198 L~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn 242 (765)
+++|++++.+|..|.||||+|+.. +..+++++|+++++++.
T Consensus 122 l~~g~~~~~~~~~g~t~l~~A~~~----~~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 122 LESGADPTIETDSGYNSMDLAVAL----GYRSVQQVIESHLLKLL 162 (167)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHH----TCHHHHHHHHHHHHHHC
T ss_pred HHcCCCCCCcCCCCCCHHHHHHHc----CcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 56779999999887654
No 67
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=1.7e-26 Score=225.79 Aligned_cols=150 Identities=23% Similarity=0.268 Sum_probs=137.4
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHC-CCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 004266 92 DHSFSRLLELAADNDVEGFKQCICD-TSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLT 170 (765)
Q Consensus 92 ~~G~TpLh~Aa~~G~~e~Vk~LLe~-gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~ 170 (765)
.++.++||.||..|+.++|++||+. +.+++.. +..|+||||+||..|+.++|++||++ |+++|.+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~ 68 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-------------DDHGFSPLHWACREGRSAVVEMLIMR-GARINVM 68 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc-------------CCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCc
Confidence 4678999999999999999999995 7889988 88999999999999999999999999 9999999
Q ss_pred cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccc
Q 004266 171 CGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSS 250 (765)
Q Consensus 171 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t 250 (765)
+..|.||||+|+..|+ .++|++||++|++++.+|..|+||||+|+.. +..+++++|+++|++++
T Consensus 69 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~~~-------- 132 (179)
T 3f6q_A 69 -NRGDDTPLHLAASHGH---RDIVQKLLQYKADINAVNEHGNVPLHYACFW----GQDQVAEDLVANGALVS-------- 132 (179)
T ss_dssp -CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCCSS--------
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHHc----CCHHHHHHHHHCCCCcc--------
Confidence 9999999999999999 9999999999999999999999999999999 55779999999999998
Q ss_pred ccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 251 VDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 251 ~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
.+|+.|.||||+|+..++..+
T Consensus 133 --------------------~~~~~g~tpl~~A~~~~~~~~ 153 (179)
T 3f6q_A 133 --------------------ICNKYGEMPVDKAKAPLRELL 153 (179)
T ss_dssp --------------------BCCTTSCCGGGGSCHHHHHHH
T ss_pred --------------------hhccCCCCcHHHHHHHHHHHH
Confidence 789999999999987665444
No 68
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=1.1e-27 Score=252.20 Aligned_cols=154 Identities=22% Similarity=0.213 Sum_probs=145.5
Q ss_pred cCCCCCCchHHHHHHHcCCHHHHHHHHHCCC-CCcccchhhhhhchhhhccCCCChHHHHHH-----HcCCHHHHHHHHh
Q 004266 88 TMKSDHSFSRLLELAADNDVEGFKQCICDTS-AICEVGLWYSFQRLSKKIVLQHRTPLMVAA-----EYGSVDVVKLILS 161 (765)
Q Consensus 88 ~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~ga-dvn~~~L~~a~~~g~~~id~~G~TPLH~Aa-----~~G~~evVk~LL~ 161 (765)
+..|.+|.||||+||..|+.++|++||+.|+ +++.. +..|+||||+|+ ..++.+++++|++
T Consensus 105 n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~-------------~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~ 171 (276)
T 4hbd_A 105 NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQ-------------NRAGYSPIMLTALATLKTQDDIETVLQLFR 171 (276)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCC-------------CTTSCCHHHHGGGCCCCSHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCC-------------CCCCCCHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 5789999999999999999999999999997 99998 899999999999 6789999999999
Q ss_pred cCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHH-CCCC
Q 004266 162 LTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLK-NGGS 240 (765)
Q Consensus 162 ~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~-~GAd 240 (765)
. |++++.. +..|+||||+|+..|+ .++|++||++|+|+|.+|..|+||||+|+.. +..+++++||+ .|++
T Consensus 172 ~-g~~~~~~-~~~g~tpLh~A~~~g~---~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~----g~~~iv~~Ll~~~gad 242 (276)
T 4hbd_A 172 L-GNINAKA-SQAGQTALMLAVSHGR---VDVVKALLACEADVNVQDDDGSTALMCACEH----GHKEIAGLLLAVPSCD 242 (276)
T ss_dssp H-SCTTCCC-TTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH----TCHHHHHHHHTSTTCC
T ss_pred c-CCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHC----CCHHHHHHHHhcCCCC
Confidence 9 9999988 8999999999999999 9999999999999999999999999999999 55779999999 8999
Q ss_pred CCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 241 VSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 241 vn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
++ .+|+.|.||||+|++.++..+
T Consensus 243 ~~----------------------------~~d~~g~TpL~~A~~~g~~~i 265 (276)
T 4hbd_A 243 IS----------------------------LTDRDGSTALMVALDAGQSEI 265 (276)
T ss_dssp TT----------------------------CCCTTSCCHHHHHHHHTCHHH
T ss_pred Cc----------------------------CcCCCCCCHHHHHHHcCCHHH
Confidence 99 789999999999999988766
No 69
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=5.3e-26 Score=220.48 Aligned_cols=157 Identities=25% Similarity=0.256 Sum_probs=141.3
Q ss_pred CCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCC
Q 004266 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDT 117 (765)
Q Consensus 38 ~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~g 117 (765)
.+.|+||.|+..+. +.+. ..|++.+.++ +..|..|.||||+|+..|+.++|++|++.|
T Consensus 13 ~~~~~l~~A~~~g~-~~~v-------------------~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 70 (169)
T 2y1l_E 13 DLGKKLLEAARAGR-DDEV-------------------RILMANGADV--NAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70 (169)
T ss_dssp CHHHHHHHHHHHTC-HHHH-------------------HHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cccchHHHHHHcCC-HHHH-------------------HHHHHCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 56899999944443 3222 5566667776 678899999999999999999999999999
Q ss_pred CCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHH
Q 004266 118 SAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLL 197 (765)
Q Consensus 118 advn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklL 197 (765)
++++.. +..|.||||+|+..|+.+++++|+++ |+++|.+ +..|.||||+|+..|+ .++|++|
T Consensus 71 ~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~L 132 (169)
T 2y1l_E 71 ADVNAV-------------DHAGMTPLRLAALFGHLEIVEVLLKN-GADVNAN-DMEGHTPLHLAAMFGH---LEIVEVL 132 (169)
T ss_dssp CCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHH
T ss_pred CCCCcc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHH
Confidence 999998 88999999999999999999999999 9999999 9999999999999999 9999999
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCC
Q 004266 198 LFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNG 238 (765)
Q Consensus 198 L~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~G 238 (765)
+++|+|++.+|..|.||||+|+.. +..+++++|++.|
T Consensus 133 l~~g~~~~~~~~~g~t~l~~A~~~----~~~~~~~~L~~~G 169 (169)
T 2y1l_E 133 LKNGADVNAQDKFGKTAFDISIDN----GNEDLAEILQKLN 169 (169)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHTC-
T ss_pred HHcCCCCCCcCCCCCCHHHHHHHh----CCHHHHHHHHHcC
Confidence 999999999999999999999999 5677999999876
No 70
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=4.9e-27 Score=247.16 Aligned_cols=172 Identities=26% Similarity=0.258 Sum_probs=150.7
Q ss_pred HHHHHCCCC--cccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccC-CCCccCCCCCCchH
Q 004266 21 SIFQKHTQN--VFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMS-NPTETMKSDHSFSR 97 (765)
Q Consensus 21 ~lLl~~gAd--Vn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~-~l~~~~~d~~G~Tp 97 (765)
+.+++.+.+ +|..|. +|+||||+|+ ..+.+.+. ..|+..+. .+ +..+..|.||
T Consensus 93 ~~l~~~~~~~~~n~~d~--~g~T~Lh~A~-~~g~~~~v-------------------~~Ll~~g~~~~--~~~~~~g~tp 148 (276)
T 4hbd_A 93 RAMSARLLDYVVNIADS--NGNTALHYSV-SHANFPVV-------------------QQLLDSGVCKV--DKQNRAGYSP 148 (276)
T ss_dssp HHHCHHHHHHHHTCCCT--TSCCHHHHHH-HTTCHHHH-------------------HHHHHTSCCCT--TCCCTTSCCH
T ss_pred HHHHHHHHhhcCcCCCC--CCCCHHHHHH-HCCCHHHH-------------------HHHHHCCCCcC--CCCCCCCCCH
Confidence 445555445 899999 9999999994 44433222 55666665 66 7789999999
Q ss_pred HHHHH-----HcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 004266 98 LLELA-----ADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCG 172 (765)
Q Consensus 98 Lh~Aa-----~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d 172 (765)
||+|+ ..++.+++++|++.|.+++.. +..|+||||+||..|+.++|++||++ |+|+|.+ |
T Consensus 149 L~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~-------------~~~g~tpLh~A~~~g~~~~v~~Ll~~-gad~n~~-d 213 (276)
T 4hbd_A 149 IMLTALATLKTQDDIETVLQLFRLGNINAKA-------------SQAGQTALMLAVSHGRVDVVKALLAC-EADVNVQ-D 213 (276)
T ss_dssp HHHGGGCCCCSHHHHHHHHHHHHHSCTTCCC-------------TTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-C
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHcCCCcccc-------------CCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC-C
Confidence 99999 679999999999999888887 78999999999999999999999999 9999999 9
Q ss_pred CCCCcHHHHHHhCCCCCHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCC
Q 004266 173 LDKSTALHCAASGGSVNAVDVVKLLLF-AGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNG 238 (765)
Q Consensus 173 ~~G~TpLH~Aa~~G~~~~~eiVklLL~-~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~G 238 (765)
.+|+||||+|+..|+ .++|++||+ .|+|++.+|..|+||||+|+.. +..+++++|++++
T Consensus 214 ~~G~TpLh~A~~~g~---~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~----g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 214 DDGSTALMCACEHGH---KEIAGLLLAVPSCDISLTDRDGSTALMVALDA----GQSEIASMLYSRM 273 (276)
T ss_dssp TTSCCHHHHHHHHTC---HHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHH----TCHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHCCC---HHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHc----CCHHHHHHHHhcc
Confidence 999999999999999 999999999 8999999999999999999999 5677999999865
No 71
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=2.8e-26 Score=224.25 Aligned_cols=164 Identities=21% Similarity=0.160 Sum_probs=143.6
Q ss_pred CCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhc-cCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHC
Q 004266 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRN-MSNPTETMKSDHSFSRLLELAADNDVEGFKQCICD 116 (765)
Q Consensus 38 ~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~-~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~ 116 (765)
.+.++||.|+..+. +.+. ..++.. ...+ +..+..|.||||+||..|+.++|++|++.
T Consensus 4 ~~~~~l~~A~~~g~-~~~v-------------------~~ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 61 (179)
T 3f6q_A 4 EFMDDIFTQCREGN-AVAV-------------------RLWLDNTENDL--NQGDDHGFSPLHWACREGRSAVVEMLIMR 61 (179)
T ss_dssp ---CCHHHHHHHTC-HHHH-------------------HHHHHCTTSCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC-HHHH-------------------HHHHhcCcccc--cccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 67899999955444 3221 344443 3344 67889999999999999999999999999
Q ss_pred CCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHH
Q 004266 117 TSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKL 196 (765)
Q Consensus 117 gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVkl 196 (765)
|++++.. +..|.||||+|+..|+.++|++||++ |+++|.+ |..|.||||+|+..|+ .++|++
T Consensus 62 g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~---~~~v~~ 123 (179)
T 3f6q_A 62 GARINVM-------------NRGDDTPLHLAASHGHRDIVQKLLQY-KADINAV-NEHGNVPLHYACFWGQ---DQVAED 123 (179)
T ss_dssp TCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHH
T ss_pred CCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHH
Confidence 9999998 88999999999999999999999999 9999999 9999999999999999 999999
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcc
Q 004266 197 LLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDE 245 (765)
Q Consensus 197 LL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n 245 (765)
|+++|++++.+|..|.||||+|+.. ...+++++|+++|++++..+
T Consensus 124 Ll~~ga~~~~~~~~g~tpl~~A~~~----~~~~~~~~L~~~g~~~~~~~ 168 (179)
T 3f6q_A 124 LVANGALVSICNKYGEMPVDKAKAP----LRELLRERAEKMGQNLNRIP 168 (179)
T ss_dssp HHHTTCCSSBCCTTSCCGGGGSCHH----HHHHHHHHHHHTTCCCSCBC
T ss_pred HHHCCCCcchhccCCCCcHHHHHHH----HHHHHHHHHHHhhcCcccCC
Confidence 9999999999999999999999988 77899999999999999544
No 72
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=2.9e-26 Score=218.16 Aligned_cols=146 Identities=21% Similarity=0.217 Sum_probs=137.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHHC-CCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 004266 94 SFSRLLELAADNDVEGFKQCICD-TSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCG 172 (765)
Q Consensus 94 G~TpLh~Aa~~G~~e~Vk~LLe~-gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d 172 (765)
+.|+||.||..|+.++|++||+. +.+++.. +..|.||||+ |..|+.+++++|+++ |+++|.+ +
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~~~~~-~ 65 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-------------NRFGKTALQV-MMFGSTAIALELLKQ-GASPNVQ-D 65 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-------------CTTSCCHHHH-SCTTCHHHHHHHHHT-TCCTTCC-C
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-------------CCCCCcHHHH-HHcCCHHHHHHHHHC-CCCCCCc-C
Confidence 56999999999999999999996 5588888 8899999999 999999999999999 9999999 9
Q ss_pred CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccccccc
Q 004266 173 LDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVD 252 (765)
Q Consensus 173 ~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~ 252 (765)
..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+.. +..+++++|+++ ++++
T Consensus 66 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~-~~~~---------- 127 (156)
T 1bd8_A 66 TSGTSPVHDAARTGF---LDTLKVLVEHGADVNVPDGTGALPIHLAVQE----GHTAVVSFLAAE-SDLH---------- 127 (156)
T ss_dssp TTSCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH----TCHHHHHHHHTT-SCTT----------
T ss_pred CCCCCHHHHHHHcCc---HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHh----ChHHHHHHHHhc-cCCC----------
Confidence 999999999999999 9999999999999999999999999999998 567799999999 8887
Q ss_pred ccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 253 LRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 253 ~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
.+|..|.||||+|++.++..+
T Consensus 128 ------------------~~~~~g~t~l~~A~~~~~~~~ 148 (156)
T 1bd8_A 128 ------------------RRDARGLTPLELALQRGAQDL 148 (156)
T ss_dssp ------------------CCCTTSCCHHHHHHHSCCHHH
T ss_pred ------------------CcCCCCCCHHHHHHHcCcHHH
Confidence 789999999999999987765
No 73
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=1.6e-26 Score=221.48 Aligned_cols=131 Identities=26% Similarity=0.237 Sum_probs=119.8
Q ss_pred CCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004266 89 MKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVN 168 (765)
Q Consensus 89 ~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN 168 (765)
..+..|.||||+||..|+.++|++||+.|+++|.. +..|+||||+|+ .|+.++|++||++ |+++|
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-------------~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~ 71 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAP-------------NSYGRRPIQVMM-MGSARVAELLLLH-GAEPN 71 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCC-------------CSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCC
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCC-------------CCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCC
Confidence 45788999999999999999999999999999998 889999999996 9999999999999 99999
Q ss_pred cccCCCCCc-HHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCC
Q 004266 169 LTCGLDKST-ALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVS 242 (765)
Q Consensus 169 ~~~d~~G~T-pLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn 242 (765)
.+ +..|.| |||+|+..|+ .++|++||++|++++.+|..|+||||+|+.. +..+++++|+++|++++
T Consensus 72 ~~-d~~g~ttpL~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~----~~~~~v~~Ll~~ga~~~ 138 (156)
T 1bi7_B 72 CA-DPATLTRPVHDAAREGF---LDTLVVLHRAGARLDVRDAWGRLPVDLAEEL----GHRDVARYLRAAAGGTR 138 (156)
T ss_dssp CC-CTTTCCCHHHHHHHHTC---HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHH----TCHHHHHHHSSCC----
T ss_pred Cc-CCCCCcHHHHHHHHCCC---HHHHHHHHHcCCCCcccCCCCCCHHHHHHHh----CHHHHHHHHHHcCCCCC
Confidence 99 999999 9999999999 9999999999999999999999999999998 56779999999999999
No 74
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.93 E-value=2.6e-26 Score=247.50 Aligned_cols=168 Identities=17% Similarity=0.129 Sum_probs=133.5
Q ss_pred Ccc-cCCCCCcHHHHH--------HHHHHHCCCCcccccCCCCCCcHHHHHHHhcCc--eeccCccccccccCCCCCCCC
Q 004266 5 PAV-TMRNKSSPLKIS--------ISIFQKHTQNVFLVDFAINDRTLLILLFFQNYL--IMCGGSEKLSSKALAPSASPP 73 (765)
Q Consensus 5 p~v-t~~ng~TPLH~A--------V~lLl~~gAdVn~~D~~~~G~TPLhlA~~~~~~--i~c~~~e~lkl~~~~t~s~~~ 73 (765)
++. ++.+|+||||+| |++|+++|+++|.+|. +|+||||+|+..+.. ..+
T Consensus 123 vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~--~g~TpLh~A~~~g~~~~~~~------------------ 182 (327)
T 1sw6_A 123 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN--MGESCLVKAVKSVNNYDSGT------------------ 182 (327)
T ss_dssp SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT--TCCCHHHHHHHSSHHHHTTC------------------
T ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC--CCCCHHHHHHHhcccccHHH------------------
Confidence 455 789999999995 6799999999999999 999999999443220 111
Q ss_pred ChhHHHhcc-CCCCccCCCCCCchHHHHHHH----cCCHHHHHHHHHC--------------------CCCCcccchhhh
Q 004266 74 SKPSLQRNM-SNPTETMKSDHSFSRLLELAA----DNDVEGFKQCICD--------------------TSAICEVGLWYS 128 (765)
Q Consensus 74 ~~~~Ll~~~-~~l~~~~~d~~G~TpLh~Aa~----~G~~e~Vk~LLe~--------------------gadvn~~~L~~a 128 (765)
...+++.+ .++ +..|..|.||||+|+. .|+.+++++|++. |++++..
T Consensus 183 -~~~ll~~~~~~~--~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~----- 254 (327)
T 1sw6_A 183 -FEALLDYLYPCL--ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK----- 254 (327)
T ss_dssp -HHHHHHHHGGGG--GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------
T ss_pred -HHHHHHhhhccc--cCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccc-----
Confidence 13444443 445 6789999999999999 9999999999985 7888887
Q ss_pred hhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC
Q 004266 129 FQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTD 208 (765)
Q Consensus 129 ~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D 208 (765)
+..|.||||+|+. +++||++ ++|.+ |..|+||||+|+..|+ .++|++||++|||++.+|
T Consensus 255 --------~~~g~t~L~~a~~------~~~Ll~~---~~n~~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~Gad~~~~d 313 (327)
T 1sw6_A 255 --------NGERKDSILENLD------LKWIIAN---MLNAQ-DSNGDTCLNIAARLGN---ISIVDALLDYGADPFIAN 313 (327)
T ss_dssp -------------CHHHHHCS------HHHHHHH---TTTCC-CTTSCCHHHHHHHHCC---HHHHHHHHHTTCCTTCCC
T ss_pred --------cccCCChhHHHHH------HHHHHHh---CCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcccC
Confidence 8999999999986 9999998 58888 9999999999999999 999999999999999999
Q ss_pred CCCCCHHHHHHhC
Q 004266 209 AHGNRPFDVIVVH 221 (765)
Q Consensus 209 ~~G~TPLh~Aa~~ 221 (765)
..|+||||+|+..
T Consensus 314 ~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 314 KSGLRPVDFGAGL 326 (327)
T ss_dssp TTSCCGGGGTCC-
T ss_pred CCCCCHHHHHHhc
Confidence 9999999999875
No 75
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=5.7e-26 Score=218.46 Aligned_cols=129 Identities=26% Similarity=0.269 Sum_probs=120.4
Q ss_pred cCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCc
Q 004266 88 TMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADV 167 (765)
Q Consensus 88 ~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdV 167 (765)
...+..|.||||+|+..|+.++|++|++.|++++.. +..|+||||+|+..|+.++|++|+++ |+++
T Consensus 36 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~ 101 (165)
T 3twr_A 36 RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-------------DKGGLVPLHNACSYGHYEVAELLVKH-GAVV 101 (165)
T ss_dssp CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCT
T ss_pred cccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCcc-------------CCCCCCHHHHHHHcCcHHHHHHHHhC-CCCC
Confidence 456778999999999999999999999999999998 88999999999999999999999999 9999
Q ss_pred ccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCC
Q 004266 168 NLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGG 239 (765)
Q Consensus 168 N~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GA 239 (765)
|.+ |..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+. +..+++++|+++|+
T Consensus 102 ~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-----~~~~i~~~L~~~gA 164 (165)
T 3twr_A 102 NVA-DLWKFTPLHEAAAKGK---YEICKLLLQHGADPTKKNRDGNTPLDLVKD-----GDTDIQDLLRGDAA 164 (165)
T ss_dssp TCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-----TCHHHHHHHHTC--
T ss_pred CCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcccCCCCCChhHhHhc-----CChHHHHHHhhccc
Confidence 999 9999999999999999 999999999999999999999999999765 33589999999986
No 76
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=2.3e-25 Score=212.11 Aligned_cols=151 Identities=24% Similarity=0.133 Sum_probs=133.6
Q ss_pred CCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCC
Q 004266 39 DRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTS 118 (765)
Q Consensus 39 G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~ga 118 (765)
..|+||.|+..+. +.+. ..+++.+..+ ..+..|.||||+|+..|+.+++++|++.|+
T Consensus 2 ~~~~L~~A~~~g~-~~~v-------------------~~Ll~~g~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 58 (153)
T 1awc_B 2 LGKKLLEAARAGQ-DDEV-------------------RILMANGAPF---TTDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58 (153)
T ss_dssp HHHHHHHHHHHTC-HHHH-------------------HHHHHHTCCC---CCCTTCCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred ccHHHHHHHHcCC-HHHH-------------------HHHHHcCCCC---CcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 4689999944443 3222 4556556555 358889999999999999999999999999
Q ss_pred CCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHH
Q 004266 119 AICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLL 198 (765)
Q Consensus 119 dvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL 198 (765)
+++.. +..|+||||+|+..|+.+++++|+++ |+++|.+ +..|.||||+|+..|+ .+++++|+
T Consensus 59 ~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll 120 (153)
T 1awc_B 59 SRDAR-------------TKVDRTPLHMAASEGHANIVEVLLKH-GADVNAK-DMLKMTALHWATEHNH---QEVVELLI 120 (153)
T ss_dssp CTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHH
T ss_pred CCCCC-------------CCCCCCHHHHHHHcChHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHH
Confidence 99998 88999999999999999999999999 9999999 9999999999999999 99999999
Q ss_pred HCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHH
Q 004266 199 FAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDL 234 (765)
Q Consensus 199 ~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~L 234 (765)
++|++++.+|..|+||||+|+.. +..+++++|
T Consensus 121 ~~ga~~~~~~~~g~t~l~~A~~~----~~~~i~~~L 152 (153)
T 1awc_B 121 KYGADVHTQSKFCKTAFDISIDN----GNEDLAEIL 152 (153)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHH
T ss_pred HcCCCccccCCCCCCHHHHHHHc----CCHHHHHHh
Confidence 99999999999999999999999 556688876
No 77
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=5.2e-26 Score=212.95 Aligned_cols=130 Identities=27% Similarity=0.259 Sum_probs=124.8
Q ss_pred cCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCc
Q 004266 88 TMKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADV 167 (765)
Q Consensus 88 ~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdV 167 (765)
+..+..|.||||+|+..|+.++|++||+.|+++|.. +..|+||||+|+. |+.++|++||++ |+++
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-------------~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~ 70 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL-------------NRFGRRPIQVMMM-GSAQVAELLLLH-GAEP 70 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCC-------------CTTCCTTTTTSTT-SCHHHHHHHHHH-TCCS
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCc-------------CCCCCCHHHHHHc-CCHHHHHHHHHC-CCCC
Confidence 577899999999999999999999999999999998 8999999999999 999999999999 9999
Q ss_pred ccccCCC-CCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCC
Q 004266 168 NLTCGLD-KSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGS 240 (765)
Q Consensus 168 N~~~d~~-G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAd 240 (765)
|.+ +.. |.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+.. +..+++++|+++|+|
T Consensus 71 ~~~-~~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~----~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 71 NCA-DPATLTRPVHDAAREGF---LDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ----GHRDIARYLHAATGD 136 (136)
T ss_dssp SCC-BTTTTBCHHHHHHHHTC---HHHHHHHHHTCCCCCCCSSSSSCHHHHHHHH----TCHHHHHHHHHHHCC
T ss_pred CCc-CCCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHHc----CCHHHHHHHHHcCCC
Confidence 999 888 9999999999999 9999999999999999999999999999998 567899999999986
No 78
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.92 E-value=5.3e-25 Score=209.43 Aligned_cols=154 Identities=16% Similarity=0.099 Sum_probs=134.7
Q ss_pred CCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCCC
Q 004266 39 DRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDTS 118 (765)
Q Consensus 39 G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~ga 118 (765)
+.|+||.|+..+. +.+. ..++.. .....+..+..|.||||+ |..|+.+++++|++.|+
T Consensus 2 ~~~~L~~A~~~g~-~~~v-------------------~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~ 59 (156)
T 1bd8_A 2 AGDRLSGAAARGD-VQEV-------------------RRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGA 59 (156)
T ss_dssp HHHHHHHHHHHTC-HHHH-------------------HHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTC
T ss_pred cchHHHHHHHhCC-HHHH-------------------HHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCC
Confidence 5689999955444 3222 344444 311226788999999999 99999999999999999
Q ss_pred CCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHH
Q 004266 119 AICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLL 198 (765)
Q Consensus 119 dvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL 198 (765)
+++.. +..|.||||+|+..|+.+++++|+++ |+++|.+ +..|.||||+|+..|+ .++|++|+
T Consensus 60 ~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll 121 (156)
T 1bd8_A 60 SPNVQ-------------DTSGTSPVHDAARTGFLDTLKVLVEH-GADVNVP-DGTGALPIHLAVQEGH---TAVVSFLA 121 (156)
T ss_dssp CTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHHTC---HHHHHHHH
T ss_pred CCCCc-------------CCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHhCh---HHHHHHHH
Confidence 99998 88999999999999999999999999 9999999 9999999999999999 99999999
Q ss_pred HCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHC
Q 004266 199 FAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKN 237 (765)
Q Consensus 199 ~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~ 237 (765)
++ ++++.+|..|.||||+|+.. +..+++++|+++
T Consensus 122 ~~-~~~~~~~~~g~t~l~~A~~~----~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 122 AE-SDLHRRDARGLTPLELALQR----GAQDLVDILQGH 155 (156)
T ss_dssp TT-SCTTCCCTTSCCHHHHHHHS----CCHHHHHHHHTT
T ss_pred hc-cCCCCcCCCCCCHHHHHHHc----CcHHHHHHHHhh
Confidence 99 99999999999999999999 567799999874
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=1.7e-25 Score=229.86 Aligned_cols=150 Identities=21% Similarity=0.125 Sum_probs=108.0
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCccccc
Q 004266 92 DHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTC 171 (765)
Q Consensus 92 ~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~ 171 (765)
..|.||||.|+..|+.++++.||++|++++.. ..|.||||+|+..|+.++|++||+. |+|+|.+
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~--------------~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~- 66 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN--------------PLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLP- 66 (239)
T ss_dssp ------------------------------------------------CHHHHHHHHHHTCHHHHHHHTST-TSSCCCC-
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC--------------chhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCc-
Confidence 46899999999999999999999999999864 5789999999999999999999999 9999999
Q ss_pred CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccc
Q 004266 172 GLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSV 251 (765)
Q Consensus 172 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~ 251 (765)
|..|.||||+|+..|+ .++|++||++|+|+|.+|..|+||||+|+.. +..+++++|+++|++++
T Consensus 67 d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~----~~~~~v~~Ll~~ga~~~--------- 130 (239)
T 1ycs_B 67 NDEGITALHNAVCAGH---TEIVKFLVQFGVNVNAADSDGWTPLHCAASC----NNVQVCKFLVESGAAVF--------- 130 (239)
T ss_dssp CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT----TCHHHHHHHHHTTCCTT---------
T ss_pred CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHHc----CCHHHHHHHHHcCCCcc---------
Confidence 9999999999999999 9999999999999999999999999999999 55779999999999999
Q ss_pred cccCCccccCCcCCCCCCcccCCCCC-cccccc--ccCCCcCCC
Q 004266 252 DLRSSSSLSSSSDDSSLSSLTCKSDD-VHAFVA--PEKKEYPID 292 (765)
Q Consensus 252 ~~~~~s~l~~a~~~~~d~n~~dk~G~-TPLHlA--aekk~ypvd 292 (765)
.++..|. ||||+| +++++..+.
T Consensus 131 -------------------~~~~~~~~t~l~~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 131 -------------------AMTYSDMQTAADKCEEMEEGYTQCS 155 (239)
T ss_dssp -------------------CCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred -------------------eecCCCCcchHHHHHHhhhccHHHH
Confidence 6676666 999999 777777763
No 80
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=1.4e-24 Score=203.08 Aligned_cols=127 Identities=27% Similarity=0.304 Sum_probs=119.8
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 004266 90 KSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNL 169 (765)
Q Consensus 90 ~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~ 169 (765)
....+.||||+||..|+.++|++|++.|+++|.. +..|+||||+||..|+.++|++||++ |+++|.
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~ 75 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAK-------------DEYGLTPLYLATAHGHLEIVEVLLKN-GADVNA 75 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTC
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCc
Confidence 4567889999999999999999999999999998 88999999999999999999999999 999999
Q ss_pred ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCC
Q 004266 170 TCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNG 238 (765)
Q Consensus 170 ~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~G 238 (765)
+ |..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+.. +..+++++|+++|
T Consensus 76 ~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~----~~~~~~~~Ll~~G 136 (136)
T 2jab_A 76 V-DAIGFTPLHLAAFIGH---LEIAEVLLKHGADVNAQDKFGKTAFDISIGN----GNEDLAEILQKLN 136 (136)
T ss_dssp C-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHC-
T ss_pred C-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcCcCCCCCCHHHHHHHC----CCHHHHHHHHHcC
Confidence 9 9999999999999999 9999999999999999999999999999999 5678999999986
No 81
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=1.9e-24 Score=196.63 Aligned_cols=126 Identities=34% Similarity=0.413 Sum_probs=121.6
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 004266 93 HSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCG 172 (765)
Q Consensus 93 ~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d 172 (765)
+|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+..|+.+++++|+++ |++++.+ +
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~ 65 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-------------DKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-D 65 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-C
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCc-------------CCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCccc-C
Confidence 5899999999999999999999999999988 88999999999999999999999999 9999999 9
Q ss_pred CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCC
Q 004266 173 LDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGS 240 (765)
Q Consensus 173 ~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAd 240 (765)
..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+.. +..+++++|+++|+|
T Consensus 66 ~~g~t~l~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~----~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 66 KNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLAARN----GHLEVVKLLLEAGAY 126 (126)
T ss_dssp TTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHHTCC
T ss_pred CCCCcHHHHHHHcCh---HHHHHHHHHcCCCCcccCCCCCCHHHHHHHc----CcHHHHHHHHHcCCC
Confidence 999999999999999 9999999999999999999999999999999 567899999999986
No 82
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=3.3e-25 Score=220.91 Aligned_cols=154 Identities=12% Similarity=0.028 Sum_probs=134.1
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCH----HHHHHHHhcCCCCccc
Q 004266 94 SFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSV----DVVKLILSLTKADVNL 169 (765)
Q Consensus 94 G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~----evVk~LL~~~GAdVN~ 169 (765)
++++|+.||..|+++.++.+++.+. +..+ +..|+||||+|+..|+. ++|++||++ |+|||.
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~------------~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~ 70 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKE------------SVLKSNILYDVLRNNNDEARYKISMFLINK-GADIKS 70 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS--SCHH------------HHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSC
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc--cccc------------ccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCC
Confidence 4678999999999999999998653 4441 36799999999999975 599999999 999999
Q ss_pred ccCCCCCcHHHHHHhCCCCC---HHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHhCCCC-CCHHHHHHHHHH-CCCCCCC
Q 004266 170 TCGLDKSTALHCAASGGSVN---AVDVVKLLLFAGADSNLTDAHGN-RPFDVIVVHPNV-PDSRVSLEDLLK-NGGSVSF 243 (765)
Q Consensus 170 ~~d~~G~TpLH~Aa~~G~~~---~~eiVklLL~~GAdvn~~D~~G~-TPLh~Aa~~g~~-~~~~~ive~LL~-~GAdvn~ 243 (765)
+ +.+|+||||+|+..|+.+ ..++|++||++|||+|.+|..|+ ||||+|+..+.. ....+++++||+ +|++++
T Consensus 71 ~-d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~- 148 (186)
T 3t8k_A 71 R-TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL- 148 (186)
T ss_dssp C-CTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT-
T ss_pred C-CCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc-
Confidence 9 999999999999998733 25889999999999999999999 999999996443 245679999999 999999
Q ss_pred cccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 244 DELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 244 ~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
++|+.|+||||+|++.++..+
T Consensus 149 ---------------------------~~d~~G~TpL~~A~~~~~~~~ 169 (186)
T 3t8k_A 149 ---------------------------IKDKWGLTALEFVKRCQKPIA 169 (186)
T ss_dssp ---------------------------CCCTTSCCHHHHHHTTTCHHH
T ss_pred ---------------------------ccCCCCCCHHHHHHHcCCHHH
Confidence 899999999999999887655
No 83
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=2.3e-24 Score=201.45 Aligned_cols=129 Identities=31% Similarity=0.307 Sum_probs=118.9
Q ss_pred CCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004266 89 MKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVN 168 (765)
Q Consensus 89 ~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN 168 (765)
.+|.+|.||||+|+..|+.+++++||+.|++++.. +..|+||||+|+..|+.+++++|+++ |++++
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~ 70 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK-------------DHAGWTPLHEACNHGHLKVVELLLQH-KALVN 70 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTT
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCccc
Confidence 57899999999999999999999999999999998 89999999999999999999999999 99999
Q ss_pred cccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCC
Q 004266 169 LTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGG 239 (765)
Q Consensus 169 ~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GA 239 (765)
.+ +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+.. ...+++++|.+.+.
T Consensus 71 ~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~----~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 71 TT-GYQNDSPLHDAAKNGH---VDIVKLLLSYGASRNAVNIFGLRPVDYTDDE----SMKSLLLLPEKNES 133 (137)
T ss_dssp CC-CGGGCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCGGGGCCCH----HHHHHHSCC-----
T ss_pred Cc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHhhc----cHHHHHhhcccccc
Confidence 99 9999999999999999 9999999999999999999999999999887 67778887776554
No 84
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.90 E-value=4e-25 Score=226.82 Aligned_cols=187 Identities=13% Similarity=0.041 Sum_probs=150.3
Q ss_pred HHHHHHCCCCcccccC-CCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCccCCCCCCchHH
Q 004266 20 ISIFQKHTQNVFLVDF-AINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTETMKSDHSFSRL 98 (765)
Q Consensus 20 V~lLl~~gAdVn~~D~-~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~~~d~~G~TpL 98 (765)
++.|++.|++++..+. ..++.||||+|+..+. +.+. ..|+..+.++ +..|.+|.|||
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~-~~~v-------------------~~Ll~~g~~~--~~~d~~g~tpL 58 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGE-LEVV-------------------QQAVKEMNDP--SQPNEEGITAL 58 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTC-HHHH-------------------HHHHHHSSCT--TCCCTTSCCHH
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCC-HHHH-------------------HHHHhcCCCC--CCCCCCCCCHH
Confidence 4678888999877654 1266788999955443 3222 5566667777 77899999999
Q ss_pred HHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcH
Q 004266 99 LELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTA 178 (765)
Q Consensus 99 h~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~Tp 178 (765)
|+||..|+.++|++||+.|+++|.. |..|+||||+||..|+.++|++||++ |++++.+++.+|+||
T Consensus 59 h~A~~~g~~~~v~~Ll~~ga~~n~~-------------d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~tp 124 (229)
T 2vge_A 59 HNAICGANYSIVDFLITAGANVNSP-------------DSHGWTPLHCAASCNDTVICMALVQH-GAAIFATTLSDGATA 124 (229)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCSSTTCCT
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCH
Confidence 9999999999999999999999998 88999999999999999999999999 999999844699999
Q ss_pred HHHH--HhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCC--CCCccccccccc
Q 004266 179 LHCA--ASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGS--VSFDELQVSSVD 252 (765)
Q Consensus 179 LH~A--a~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAd--vn~~n~~~~t~~ 252 (765)
||+| +..|+ .+++++|+++|++++.+|..|.||||.++... ..++|++.|++ ++.+|..|.|+.
T Consensus 125 L~~A~a~~~~~---~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~-------~~~~ll~~ga~~~~~~~d~~G~TpL 192 (229)
T 2vge_A 125 FEKCDPYREGY---ADCATYLADVEQSMGLMNSGAVYALWDYSAEF-------GDELSFREGESVTVLRRDGPEETDW 192 (229)
T ss_dssp GGGCCTTSTTH---HHHHHHHHHHHHHTTTSGGGEEEESSCBCCSS-------TTBCCBCTTCEEEEEESSCTTCSSE
T ss_pred HHHHHHHhcCh---HHHHHHHHHcCCCcccccCCchHHHHHHhhcc-------ccccCccccccccccccCCCcccHH
Confidence 9999 99999 99999999999999999999999999765542 33678899998 566677777663
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.89 E-value=8.1e-25 Score=218.11 Aligned_cols=133 Identities=12% Similarity=0.056 Sum_probs=118.6
Q ss_pred CCCchHHHHHHHcCCH----HHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCC------HHHHHHHHh
Q 004266 92 DHSFSRLLELAADNDV----EGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGS------VDVVKLILS 161 (765)
Q Consensus 92 ~~G~TpLh~Aa~~G~~----e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~------~evVk~LL~ 161 (765)
..|+||||+|+..|+. ++|++||+.|+++|.+ +.+|+||||+|+..|+ .++|++||+
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~-------------d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~ 102 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSR-------------TKEGTTLFFPLFQGGGNDITGTTELCKIFLE 102 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCC-------------CTTCCCTHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCC-------------CCCCCcHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 6799999999999985 5899999999999999 8999999999999997 689999999
Q ss_pred cCCCCcccccCCCCC-cHHHHHHhCCCC--CHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHC
Q 004266 162 LTKADVNLTCGLDKS-TALHCAASGGSV--NAVDVVKLLLF-AGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKN 237 (765)
Q Consensus 162 ~~GAdVN~~~d~~G~-TpLH~Aa~~G~~--~~~eiVklLL~-~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~ 237 (765)
+ |+|||.+ |..|. ||||+|+..+.. ...+++++||+ +|+|++.+|..|+||||+|+.. +..+++++|+++
T Consensus 103 ~-Gadin~~-d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~----~~~~~v~~L~~~ 176 (186)
T 3t8k_A 103 K-GADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC----QKPIALKMMEDY 176 (186)
T ss_dssp T-TCCSSSC-BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTT----TCHHHHHHHHHH
T ss_pred C-CCCCCcc-CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHc----CCHHHHHHHHHH
Confidence 9 9999999 99999 999999996541 12679999999 9999999999999999999999 556788888877
Q ss_pred CCCCCC
Q 004266 238 GGSVSF 243 (765)
Q Consensus 238 GAdvn~ 243 (765)
..+.+.
T Consensus 177 ~~~~~~ 182 (186)
T 3t8k_A 177 IKKYNL 182 (186)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 655553
No 86
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=8.8e-24 Score=213.55 Aligned_cols=139 Identities=21% Similarity=0.270 Sum_probs=117.9
Q ss_pred CCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004266 89 MKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVN 168 (765)
Q Consensus 89 ~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN 168 (765)
..+..|.||||+||..|+.++|++||+.|+++|.. +..|+||||+||..|+.++|++||+..|+++|
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~ 134 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-------------DKAGSTALYWACHGGHKDIVEMLFTQPNIELN 134 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC
T ss_pred ccccccccccccccccCcHHHHHHHHhCCCCcccc-------------CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc
Confidence 34677899999999999999999999999999998 88999999999999999999999997799999
Q ss_pred cccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCccccc
Q 004266 169 LTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQV 248 (765)
Q Consensus 169 ~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~ 248 (765)
.+ |..|+||||+|+..|+ .++|++||++|++++.+|..|+||||+|+.. +..++++.|++.|++.+..|..+
T Consensus 135 ~~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~----~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 135 QQ-NKLGDTALHAAAWKGY---ADIVQLLLAKGARTDLRNIEKKLAFDMATNA----ACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp CC-CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCSCCCCTTSCCHHHHCCSH----HHHHHHC----------------
T ss_pred cc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCccccCCCCCHHHHhcch----hHHHHHHHHhccchhhhccchhh
Confidence 99 9999999999999999 9999999999999999999999999999987 78889999999999998655443
No 87
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=2.9e-23 Score=190.59 Aligned_cols=113 Identities=24% Similarity=0.349 Sum_probs=106.5
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 004266 91 SDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLT 170 (765)
Q Consensus 91 d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~ 170 (765)
+..|.|+||+|+..|+.++|++|++.|++++.. +..|+||||+||..|+.++|++||++ |+++|.+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~ 69 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRT-------------LEGGRKPLHYAADCGQLEILEFLLLK-GADINAP 69 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSC-------------CTTSSCHHHHHHHTTCHHHHHHHHTT-TCCTTCC
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCcc-------------CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCcC
Confidence 457889999999999999999999999999998 88999999999999999999999999 9999999
Q ss_pred cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhC
Q 004266 171 CGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVH 221 (765)
Q Consensus 171 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~ 221 (765)
|..|+||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+..
T Consensus 70 -d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~ 116 (123)
T 3aaa_C 70 -DKHHITPLLSAVYEGH---VSCVKLLLSKGADKTVKGPDGLTAFEATDNQ 116 (123)
T ss_dssp -CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHhCCH
Confidence 9999999999999999 9999999999999999999999999999543
No 88
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=6.7e-23 Score=191.43 Aligned_cols=118 Identities=22% Similarity=0.161 Sum_probs=111.6
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q 004266 137 VLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFD 216 (765)
Q Consensus 137 d~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh 216 (765)
+..|+||||+||..|+.+++++||+. |+++|.+ +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||
T Consensus 7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~ 81 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVK-DHAGWTPLHEACNHGH---LKVVELLLQHKALVNTTGYQNDSPLH 81 (137)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCcccCcCCCCCCHHH
Confidence 78999999999999999999999999 9999999 9999999999999999 99999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 217 VIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 217 ~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
+|+.. +..+++++|+++|++++ .+|..|.||||+|+.++...+
T Consensus 82 ~A~~~----~~~~~v~~Ll~~ga~~~----------------------------~~~~~g~tpl~~A~~~~~~~~ 124 (137)
T 3c5r_A 82 DAAKN----GHVDIVKLLLSYGASRN----------------------------AVNIFGLRPVDYTDDESMKSL 124 (137)
T ss_dssp HHHHT----TCHHHHHHHHHTTCCTT----------------------------CCCTTSCCGGGGCCCHHHHHH
T ss_pred HHHHc----CCHHHHHHHHHcCCCCC----------------------------CCCCCCCCHHHHHhhccHHHH
Confidence 99999 56779999999999999 789999999999987765554
No 89
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.89 E-value=4.8e-23 Score=220.41 Aligned_cols=148 Identities=18% Similarity=0.126 Sum_probs=124.6
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHc---CCHHHHHHHHhcCCCCc
Q 004266 91 SDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEY---GSVDVVKLILSLTKADV 167 (765)
Q Consensus 91 d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~---G~~evVk~LL~~~GAdV 167 (765)
.....++||.|+..|+++.|+.||+.|++++.... ....+..|+||||+||.. |+.++|++||++ |+||
T Consensus 148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~-------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadv 219 (301)
T 2b0o_E 148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLP-------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHL 219 (301)
T ss_dssp CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE-------CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCT
T ss_pred cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCC-------CcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCC
Confidence 34456889999999999999999999999987300 000178999999999997 899999999999 9999
Q ss_pred ccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccc
Q 004266 168 NLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQ 247 (765)
Q Consensus 168 N~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~ 247 (765)
|.+ |.+|+||||+|+..|+ .++|++||++|||++.+|.+|+||||+|+.. +..+++++|+++|++
T Consensus 220 n~~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~----~~~~iv~~Ll~~ga~------- 284 (301)
T 2b0o_E 220 DAK-AADGNTALHYAALYNQ---PDCLKLLLKGRALVGTVNEAGETALDIARKK----HHKECEELLEQAQAG------- 284 (301)
T ss_dssp TCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCCSCCCTTSCCHHHHHHHH----TCHHHHHHHHHHHHH-------
T ss_pred CCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc----CCHHHHHHHHHhcCC-------
Confidence 999 9999999999999999 9999999999999999999999999999998 557799999998764
Q ss_pred cccccccCCccccCCcCCCCCCcccCCCCCccccccccCCC
Q 004266 248 VSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKE 288 (765)
Q Consensus 248 ~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ 288 (765)
.|.||||+|++.|+
T Consensus 285 ---------------------------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 285 ---------------------------TFAFPLHVDYSWVI 298 (301)
T ss_dssp ---------------------------TTSSCCC-------
T ss_pred ---------------------------CCCChhHHHHhcCC
Confidence 25799999998775
No 90
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.88 E-value=3.1e-23 Score=193.97 Aligned_cols=134 Identities=11% Similarity=0.043 Sum_probs=120.8
Q ss_pred CCCcccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCccCCCCCCchHHHHHHHcCC
Q 004266 27 TQNVFLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTETMKSDHSFSRLLELAADND 106 (765)
Q Consensus 27 gAdVn~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~ 106 (765)
+++++..|. .|.||||+|+. .+.+.+. +.|++.+.++ +..|..|.||||+|+. |+
T Consensus 2 ~~~~~~~~~--~g~t~L~~A~~-~~~~~~v-------------------~~Ll~~g~~~--~~~~~~g~t~L~~A~~-~~ 56 (136)
T 1d9s_A 2 SPGIHMLGG--SSDAGLATAAA-RGQVETV-------------------RQLLEAGADP--NALNRFGRRPIQVMMM-GS 56 (136)
T ss_dssp CCCCSCCCC--CCSCHHHHHHH-TTCHHHH-------------------HHHHHTTCCT--TCCCTTCCTTTTTSTT-SC
T ss_pred CCCccCCCC--CCccHHHHHHH-cCCHHHH-------------------HHHHHcCCCc--CCcCCCCCCHHHHHHc-CC
Confidence 689999999 99999999944 4433222 5566667776 7789999999999999 99
Q ss_pred HHHHHHHHHCCCCCcccchhhhhhchhhhccCC-CChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhC
Q 004266 107 VEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQ-HRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASG 185 (765)
Q Consensus 107 ~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~-G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~ 185 (765)
.+++++|++.|++++.. +.. |+||||+|+..|+.+++++||++ |++++.+ +..|.||||+|+..
T Consensus 57 ~~~v~~Ll~~g~~~~~~-------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~-d~~g~tpl~~A~~~ 121 (136)
T 1d9s_A 57 AQVAELLLLHGAEPNCA-------------DPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVC-DAWGRLPVDLAEEQ 121 (136)
T ss_dssp HHHHHHHHHHTCCSSCC-------------BTTTTBCHHHHHHHHTCHHHHHHHHHT-CCCCCCC-SSSSSCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCc-------------CCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHc
Confidence 99999999999999998 788 99999999999999999999999 9999999 99999999999999
Q ss_pred CCCCHHHHHHHHHHCCCC
Q 004266 186 GSVNAVDVVKLLLFAGAD 203 (765)
Q Consensus 186 G~~~~~eiVklLL~~GAd 203 (765)
|+ .+++++|+++|||
T Consensus 122 ~~---~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 122 GH---RDIARYLHAATGD 136 (136)
T ss_dssp TC---HHHHHHHHHHHCC
T ss_pred CC---HHHHHHHHHcCCC
Confidence 99 9999999999986
No 91
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.88 E-value=1.9e-23 Score=200.01 Aligned_cols=145 Identities=12% Similarity=-0.029 Sum_probs=110.5
Q ss_pred ccccCCCCCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHH
Q 004266 31 FLVDFAINDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGF 110 (765)
Q Consensus 31 n~~D~~~~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~V 110 (765)
+..+. .|.||||+|+..+. +.+. ..|++.+.++ +..+..|.||||+|+ .|+.++|
T Consensus 6 ~~~~~--~~~t~L~~A~~~g~-~~~v-------------------~~Ll~~g~~~--~~~~~~g~t~L~~A~-~~~~~~v 60 (156)
T 1bi7_B 6 GSSME--PSADWLATAAARGR-VEEV-------------------RALLEAGANP--NAPNSYGRRPIQVMM-MGSARVA 60 (156)
T ss_dssp ----C--CSTTHHHHHHHHTC-HHHH-------------------HHHHTTTCCT--TCCCSSSCCTTTSSC-TTCHHHH
T ss_pred cCCCc--cchHHHHHHHHcCC-HHHH-------------------HHHHHcCCCC--CCCCCCCCCHHHHHH-cCCHHHH
Confidence 44566 88999999955443 3222 4566666666 778999999999986 9999999
Q ss_pred HHHHHCCCCCcccchhhhhhchhhhccCCCCh-HHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCC
Q 004266 111 KQCICDTSAICEVGLWYSFQRLSKKIVLQHRT-PLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVN 189 (765)
Q Consensus 111 k~LLe~gadvn~~~L~~a~~~g~~~id~~G~T-PLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~ 189 (765)
++||+.|+++|.. +..|+| |||+|+..|+.++|++||++ |+++|.+ +..|.||||+|+..|+
T Consensus 61 ~~Ll~~g~~~~~~-------------d~~g~ttpL~~A~~~~~~~~v~~Ll~~-ga~~~~~-d~~g~tpl~~A~~~~~-- 123 (156)
T 1bi7_B 61 ELLLLHGAEPNCA-------------DPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVR-DAWGRLPVDLAEELGH-- 123 (156)
T ss_dssp HHHHTTTCCCCCC-------------CTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCC-CTTCCCHHHHHHHHTC--
T ss_pred HHHHHcCCCCCCc-------------CCCCCcHHHHHHHHCCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHhCH--
Confidence 9999999999999 889999 99999999999999999999 9999999 9999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q 004266 190 AVDVVKLLLFAGADSNLTDAHGNRPFDVI 218 (765)
Q Consensus 190 ~~eiVklLL~~GAdvn~~D~~G~TPLh~A 218 (765)
.+++++|+++|++++.+|..|.||.+-+
T Consensus 124 -~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 124 -RDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp -HHHHHHHSSCC-----------------
T ss_pred -HHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 9999999999999999999999998854
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=3.1e-22 Score=196.85 Aligned_cols=115 Identities=24% Similarity=0.203 Sum_probs=109.0
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 004266 91 SDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLT 170 (765)
Q Consensus 91 d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~ 170 (765)
+.+|.||||+|+..|+.++|++||+ |+++|.. +..|+||||+|+..|+.++|++||++ |+++|.+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~-------------d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~ 105 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAV-------------DENGRTALLFVAGLGSDKCVRLLAEA-GADLDHR 105 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcC
Confidence 5689999999999999999999999 9999998 89999999999999999999999999 9999999
Q ss_pred cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCC
Q 004266 171 CGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPN 223 (765)
Q Consensus 171 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~ 223 (765)
++.+|+||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+..++
T Consensus 106 ~~~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~ 155 (183)
T 3deo_A 106 DMRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERGLTALELAREILK 155 (183)
T ss_dssp CSSSSCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHhcCc---HHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc
Confidence 33899999999999999 999999999999999999999999999998643
No 93
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=3.8e-22 Score=183.11 Aligned_cols=113 Identities=25% Similarity=0.256 Sum_probs=104.9
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q 004266 137 VLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFD 216 (765)
Q Consensus 137 d~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh 216 (765)
+..|.||||+|+..|+.++|++||+. |+++|.+ +..|+||||+|+..|+ .++|++|+++|++++.+|..|+||||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~tpL~ 78 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRT-LEGGRKPLHYAADCGQ---LEILEFLLLKGADINAPDKHHITPLL 78 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSC-CTTSSCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCcc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence 56789999999999999999999999 9999999 9999999999999999 99999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccC
Q 004266 217 VIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEK 286 (765)
Q Consensus 217 ~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaek 286 (765)
+|+.. +..+++++|+++|++++ .+|.+|.||||+|...
T Consensus 79 ~A~~~----~~~~~v~~Ll~~ga~~~----------------------------~~~~~g~t~l~~A~~~ 116 (123)
T 3aaa_C 79 SAVYE----GHVSCVKLLLSKGADKT----------------------------VKGPDGLTAFEATDNQ 116 (123)
T ss_dssp HHHHH----TCHHHHHHHHHTTCCTT----------------------------CCCTTSCCHHHHCCCH
T ss_pred HHHHc----CCHHHHHHHHHcCCCCC----------------------------CcCCCCCCHHHHhCCH
Confidence 99998 55779999999999998 7899999999999543
No 94
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.86 E-value=3.1e-22 Score=187.14 Aligned_cols=118 Identities=27% Similarity=0.266 Sum_probs=111.0
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q 004266 137 VLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFD 216 (765)
Q Consensus 137 d~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh 216 (765)
...|.||||+||..|+.++|++||++ |+++|.+ |..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~ 85 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMAN-GADVNAK-DEYGLTPLYLATAHGH---LEIVEVLLKNGADVNAVDAIGFTPLH 85 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence 45688999999999999999999999 9999999 9999999999999999 99999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCC
Q 004266 217 VIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPI 291 (765)
Q Consensus 217 ~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypv 291 (765)
+|+.. +..+++++|+++|++++ .+|.+|.||||+|+..++..+
T Consensus 86 ~A~~~----~~~~~v~~Ll~~g~~~~----------------------------~~~~~g~tpl~~A~~~~~~~~ 128 (136)
T 2jab_A 86 LAAFI----GHLEIAEVLLKHGADVN----------------------------AQDKFGKTAFDISIGNGNEDL 128 (136)
T ss_dssp HHHHH----TCHHHHHHHHHTTCCTT----------------------------CCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHc----CCHHHHHHHHHcCCCCc----------------------------CcCCCCCCHHHHHHHCCCHHH
Confidence 99998 56779999999999998 789999999999999987655
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=8.8e-22 Score=203.30 Aligned_cols=134 Identities=22% Similarity=0.141 Sum_probs=120.4
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 004266 91 SDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLT 170 (765)
Q Consensus 91 d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~ 170 (765)
+.+|.||||+||..|+.++|++||+ |+++|.. +..|+||||+||..|+.++|++||++ |+++|.+
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~ 106 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAV-------------DENGRTALLFVAGLGSDKCVRLLAEA-GADLDHR 106 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCB-------------CTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCC
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCc-------------CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCcC
Confidence 4679999999999999999999999 9999998 89999999999999999999999999 9999999
Q ss_pred cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCC------------CCHHHHHHHHHHCC
Q 004266 171 CGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNV------------PDSRVSLEDLLKNG 238 (765)
Q Consensus 171 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~------------~~~~~ive~LL~~G 238 (765)
++..|+||||+|+..|+ .++|++||++|+|++.+|..|+||||+|+..++. .+..+++++|++++
T Consensus 107 ~~~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~ 183 (244)
T 3ui2_A 107 DMRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQV 183 (244)
T ss_dssp CSSSCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence 33889999999999999 9999999999999999999999999999843221 15677999999876
Q ss_pred CCCC
Q 004266 239 GSVS 242 (765)
Q Consensus 239 Advn 242 (765)
.+..
T Consensus 184 ~~~~ 187 (244)
T 3ui2_A 184 FEYA 187 (244)
T ss_dssp EEEE
T ss_pred cccc
Confidence 5543
No 96
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.85 E-value=5.8e-21 Score=173.45 Aligned_cols=126 Identities=33% Similarity=0.324 Sum_probs=112.0
Q ss_pred CCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCccCCCCCCchHHHHHHHcCCHHHHHHHHHCC
Q 004266 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTETMKSDHSFSRLLELAADNDVEGFKQCICDT 117 (765)
Q Consensus 38 ~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~g 117 (765)
+|+||||+|+..+. +.+. ..|++.+.++ +..+..|.||||+|+..|+.+++++|++.|
T Consensus 1 ~g~t~L~~A~~~~~-~~~v-------------------~~Ll~~~~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 58 (126)
T 1n0r_A 1 NGRTPLHLAARNGH-LEVV-------------------KLLLEAGADV--NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58 (126)
T ss_dssp CCCCHHHHHHHHTC-HHHH-------------------HHHHHHTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCccHHHHHHHcCc-HHHH-------------------HHHHHcCCCC--CCcCCCCCcHHHHHHHcCcHHHHHHHHHcC
Confidence 58999999954443 2222 4556566666 677899999999999999999999999999
Q ss_pred CCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHH
Q 004266 118 SAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLL 197 (765)
Q Consensus 118 advn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklL 197 (765)
++++.. +..|.||||+|+..|+.+++++|+++ |++++.+ +..|.||||+|+..|+ .+++++|
T Consensus 59 ~~~~~~-------------~~~g~t~l~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~l~~A~~~~~---~~~~~~L 120 (126)
T 1n0r_A 59 ADVNAK-------------DKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLL 120 (126)
T ss_dssp CCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHH
T ss_pred CCCccc-------------CCCCCcHHHHHHHcChHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCc---HHHHHHH
Confidence 999998 88999999999999999999999999 9999999 9999999999999999 9999999
Q ss_pred HHCCCC
Q 004266 198 LFAGAD 203 (765)
Q Consensus 198 L~~GAd 203 (765)
+++|||
T Consensus 121 l~~Gad 126 (126)
T 1n0r_A 121 LEAGAY 126 (126)
T ss_dssp HHHTCC
T ss_pred HHcCCC
Confidence 999986
No 97
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.85 E-value=2.1e-21 Score=213.85 Aligned_cols=153 Identities=18% Similarity=0.150 Sum_probs=119.9
Q ss_pred CCCCCCchHHHHHHHc-CCHHHHHHHHHCCCCCcccchhhhhhchhhhcc--CCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 004266 89 MKSDHSFSRLLELAAD-NDVEGFKQCICDTSAICEVGLWYSFQRLSKKIV--LQHRTPLMVAAEYGSVDVVKLILSLTKA 165 (765)
Q Consensus 89 ~~d~~G~TpLh~Aa~~-G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id--~~G~TPLH~Aa~~G~~evVk~LL~~~GA 165 (765)
..+..+.|+||.|+.. |++++|++||+.|+++|.. + ..|.||||+||..|+.++|++||++ |+
T Consensus 194 l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~-------------~~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Ga 259 (368)
T 3jue_A 194 LGSLHPGALLFRASGHPPSLPTMADALAHGADVNWV-------------NGGQDNATPLIQATAANSLLACEFLLQN-GA 259 (368)
T ss_dssp ---CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCC-------------CTTTTCCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred cccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCcc-------------ccccCCCCHHHHHHHCCCHHHHHHHHHc-CC
Confidence 3445677999999999 9999999999999999988 5 7899999999999999999999999 99
Q ss_pred CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcc
Q 004266 166 DVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDE 245 (765)
Q Consensus 166 dVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n 245 (765)
|+|.+ |..|+||||+|+..|+ .++|++||++|+|++.+|.+|+||||+|+.. +..+++++|+..+.....
T Consensus 260 dvn~~-d~~G~TpLh~A~~~g~---~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~----g~~~iv~lLl~~~~~~~~-- 329 (368)
T 3jue_A 260 NVNQA-DSAGRGPLHHATILGH---TGLACLFLKRGADLGARDSEGRDPLTIAMET----ANADIVTLLRLAKMREAE-- 329 (368)
T ss_dssp CTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHHHC------
T ss_pred CCCCC-CCCCCCHHHHHHHcCc---HHHHHHHHHCcCCCCCcCCCCCCHHHHHHHC----CCHHHHHHHHHcCCCccc--
Confidence 99999 9999999999999999 9999999999999999999999999999999 567799999988754331
Q ss_pred cccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCC
Q 004266 246 LQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKE 288 (765)
Q Consensus 246 ~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ 288 (765)
....+..+.|+|+++.....
T Consensus 330 -----------------------~~~~~~~~~t~l~i~~~~~~ 349 (368)
T 3jue_A 330 -----------------------AAQGQAGDETYLDIFRDFSL 349 (368)
T ss_dssp -------------------------------------------
T ss_pred -----------------------ccccCCCCCCHHHHHHHHHh
Confidence 11455667888887755443
No 98
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.85 E-value=2.1e-23 Score=230.41 Aligned_cols=211 Identities=9% Similarity=-0.047 Sum_probs=149.1
Q ss_pred CCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCC-CCccCCCCCCchHHHHHHHcCCHHHHHHHHHC
Q 004266 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSN-PTETMKSDHSFSRLLELAADNDVEGFKQCICD 116 (765)
Q Consensus 38 ~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~-l~~~~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~ 116 (765)
+++||||+|+..|. +.+. +.|+..+.. ......+..|.||||+||..|+.++|++|+++
T Consensus 91 ~~~T~Lh~Aa~~G~-~e~v-------------------~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~ 150 (376)
T 2aja_A 91 KSEVICFVAAITGC-SSAL-------------------DTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 150 (376)
T ss_dssp CHHHHHHHHHHHCC-HHHH-------------------HHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS
T ss_pred CcCCHHHHHHHcCC-HHHH-------------------HHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 56799999954443 3222 334433321 11123456789999999999999999999999
Q ss_pred CCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCccc--ccCCCCCcHHHHHH-hCCCCCHHHH
Q 004266 117 TSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNL--TCGLDKSTALHCAA-SGGSVNAVDV 193 (765)
Q Consensus 117 gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~--~~d~~G~TpLH~Aa-~~G~~~~~ei 193 (765)
|++++..++ . +.+ .||||+||..|+.++|++||++ |++++. . +..|.||||+|+ ..|+ .++
T Consensus 151 gad~~~~~i--------~--~~~-~TpLh~Aa~~G~~eiv~~Ll~~-ga~~~~~~~-d~~g~TpL~~Aa~~~G~---~ei 214 (376)
T 2aja_A 151 APTEIMAMI--------Q--AEN-YHAFRLAAENGHLHVLNRLCEL-APTEATAMI-QAENYYAFRWAAVGRGH---HNV 214 (376)
T ss_dssp CTTTHHHHH--------S--HHH-HHHHHHHHHTTCHHHHHHHHHS-CGGGHHHHH-HHHHHHHHHHHHSTTCC---HHH
T ss_pred CCCcccccc--------C--CCC-CCHHHHHHHCCCHHHHHHHHHc-CCccchhcc-CCCCCCHHHHHHHHCCC---HHH
Confidence 986432210 0 122 8999999999999999999999 999987 7 888999999999 9999 999
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccC------------
Q 004266 194 VKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSS------------ 261 (765)
Q Consensus 194 VklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~------------ 261 (765)
|++|+++|++ |.||||+|+..|+.+ ++++|+++|++++..+.....+..++...+..
T Consensus 215 v~~Ll~~ga~-------~~taL~~Aa~~g~~e----vv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~ 283 (376)
T 2aja_A 215 INFLLDCPVM-------LAYAEIHEFEYGEKY----VNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLR 283 (376)
T ss_dssp HHHHTTSHHH-------HHHHHHCTTTTTTTT----HHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCc-------cchHHHHHHHCCCHH----HHHHHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHH
Confidence 9999998853 899999999996655 99999999988876554433333222211000
Q ss_pred ---------------------CcCCCCCCcccCCCCCccccccccCCCcCCCCCC
Q 004266 262 ---------------------SSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSL 295 (765)
Q Consensus 262 ---------------------a~~~~~d~n~~dk~G~TPLHlAaekk~ypvdp~L 295 (765)
..+.-.+.....+.++||||+|+.+|+..+...|
T Consensus 284 ~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lL 338 (376)
T 2aja_A 284 NLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 338 (376)
T ss_dssp HHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHH
T ss_pred HHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHH
Confidence 0000001123445678999999999998874433
No 99
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=5e-21 Score=218.26 Aligned_cols=135 Identities=19% Similarity=0.156 Sum_probs=118.8
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHH---cCCHHHHHHHHhcCCCCccc
Q 004266 93 HSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAE---YGSVDVVKLILSLTKADVNL 169 (765)
Q Consensus 93 ~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~---~G~~evVk~LL~~~GAdVN~ 169 (765)
...+.||.|+..|++++|+.||+.|+++|.... ....+..|+||||+||. .|+.++|++||++ |+|+|.
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~-------~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~-ga~vn~ 202 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLP-------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDA 202 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBC-------CSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH-SCCTTC
T ss_pred ccHHHHHHHHhccCHHHHHHHHhhcccccCCCC-------CcccccccchHHHHHHHhcccccHHHHHHHHHc-CCCCCc
Confidence 345789999999999999999999999986510 11125789999999976 9999999999999 999999
Q ss_pred ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCCC
Q 004266 170 TCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVSF 243 (765)
Q Consensus 170 ~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn~ 243 (765)
+ |.+|+||||+|+..|+ .++|++||++|||+|.+|.+|+||||+|+.. +..+++++|+++|++++.
T Consensus 203 ~-d~~g~TpLh~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~----~~~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 203 K-AADGNTALHYAALYNQ---PDCLKLLLKGRALVGTVNEAGETALDIARKK----HHKECEELLEQAQAGTFA 268 (497)
T ss_dssp C-CSSSCCHHHHHTTTTC---HHHHHHHHHTCCCCSCCCTTCCCHHHHHHHT----TCHHHHHHHHHTCC----
T ss_pred c-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc----CCHHHHHHHHHhCCCCCC
Confidence 9 9999999999999999 9999999999999999999999999999999 567799999999999994
No 100
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=1.2e-20 Score=199.40 Aligned_cols=134 Identities=20% Similarity=0.195 Sum_probs=119.8
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHc---CCHHHHHHHHhcCCCCccc
Q 004266 93 HSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEY---GSVDVVKLILSLTKADVNL 169 (765)
Q Consensus 93 ~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~---G~~evVk~LL~~~GAdVN~ 169 (765)
...++|+.|+..|+++.++.+++.|++++..-+ ....+..|+||||+||.. |+.++|++||++ |+|+|.
T Consensus 129 ~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~-------l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~ 200 (278)
T 1dcq_A 129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIP-------LANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDK 200 (278)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCC-------CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTC
T ss_pred hhhhhhhhHhhhcccHHHHHHHHhhcchhhhcc-------ccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccc
Confidence 346899999999999999999999999765410 001167899999999999 999999999999 999999
Q ss_pred ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCC
Q 004266 170 TCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVS 242 (765)
Q Consensus 170 ~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn 242 (765)
+ |.+|+||||+|+..|+ .++|++||++|||++.+|.+|+||||+|+.. +..+++++|+++|++..
T Consensus 201 ~-d~~g~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~----~~~~~v~~Ll~~ga~~~ 265 (278)
T 1dcq_A 201 Q-TGKGSTALHYCCLTDN---AECLKLLLRGKASIEIANESGETPLDIAKRL----KHEHCEELLTQALSGRF 265 (278)
T ss_dssp C-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHHHTTCC
T ss_pred c-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCccCCCCCHHHHHHHc----CCHHHHHHHHHcCCCCC
Confidence 9 9999999999999999 9999999999999999999999999999999 55779999999998654
No 101
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.84 E-value=1.3e-20 Score=164.66 Aligned_cols=93 Identities=42% Similarity=0.565 Sum_probs=88.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q 004266 139 QHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVI 218 (765)
Q Consensus 139 ~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~A 218 (765)
+|+||||+||..|+.+++++||+. |+++|.+ |..|+||||+|+..|+ .+++++|+++|++++.+|..|+||||+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t~l~~A 75 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLA 75 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence 489999999999999999999999 9999999 9999999999999999 9999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHCCCC
Q 004266 219 VVHPNVPDSRVSLEDLLKNGGS 240 (765)
Q Consensus 219 a~~g~~~~~~~ive~LL~~GAd 240 (765)
+.. +..+++++|+++|++
T Consensus 76 ~~~----~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 76 ARN----GHLEVVKLLLEAGAY 93 (93)
T ss_dssp HHT----TCHHHHHHHHHTTCC
T ss_pred HHc----CCHHHHHHHHHcCCC
Confidence 999 567799999999985
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.83 E-value=2.2e-21 Score=195.98 Aligned_cols=124 Identities=20% Similarity=0.188 Sum_probs=113.0
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHC-CCCCCCCCCCCCCHH
Q 004266 137 VLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFA-GADSNLTDAHGNRPF 215 (765)
Q Consensus 137 d~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~-GAdvn~~D~~G~TPL 215 (765)
+..|.||||+||..|+.++|++||+. |+++|.+ +..|+||||+|+..|+ .++|++||++ |+++|.+|..|+|||
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~g~~~~~~d~~g~tpL 144 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGL-DKAGSTALYWACHGGH---KDIVEMLFTQPNIELNQQNKLGDTAL 144 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHTTSTTCCCCCCCTTSCCHH
T ss_pred ccccccccccccccCcHHHHHHHHhC-CCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHcCCCCCccccCCCCCCHH
Confidence 57899999999999999999999998 9999999 9999999999999999 9999999999 999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCCCCCC
Q 004266 216 DVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPIDPSL 295 (765)
Q Consensus 216 h~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypvdp~L 295 (765)
|+|+.. +..+++++||++|++++ .+|.+|.||||+|+..+...+...+
T Consensus 145 ~~A~~~----~~~~~v~~Ll~~ga~~~----------------------------~~~~~g~t~l~~A~~~~~~~~l~~l 192 (222)
T 3ehr_A 145 HAAAWK----GYADIVQLLLAKGARTD----------------------------LRNIEKKLAFDMATNAACASLLKKK 192 (222)
T ss_dssp HHHHHH----TCHHHHHHHHHHTCCSC----------------------------CCCTTSCCHHHHCCSHHHHHHHC--
T ss_pred HHHHHc----CCHHHHHHHHHcCCCCc----------------------------cccCCCCCHHHHhcchhHHHHHHHH
Confidence 999999 55779999999999999 7899999999999988877664444
Q ss_pred CC
Q 004266 296 PD 297 (765)
Q Consensus 296 pD 297 (765)
.+
T Consensus 193 ~~ 194 (222)
T 3ehr_A 193 QG 194 (222)
T ss_dssp --
T ss_pred hc
Confidence 33
No 103
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=2.8e-20 Score=162.59 Aligned_cols=93 Identities=38% Similarity=0.417 Sum_probs=89.1
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 004266 93 HSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCG 172 (765)
Q Consensus 93 ~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d 172 (765)
+|.||||+|+..|+.+++++|++.|+++|.. +..|+||||+|+..|+.+++++|+++ |+++|.+ |
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~-------------d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~-d 65 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-------------DKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-D 65 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-C
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-C
Confidence 5899999999999999999999999999999 89999999999999999999999999 9999999 9
Q ss_pred CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCC
Q 004266 173 LDKSTALHCAASGGSVNAVDVVKLLLFAGAD 203 (765)
Q Consensus 173 ~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAd 203 (765)
.+|.||||+|+..|+ .+++++|+++||+
T Consensus 66 ~~g~t~l~~A~~~~~---~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 66 KNGRTPLHLAARNGH---LEVVKLLLEAGAY 93 (93)
T ss_dssp TTSCCHHHHHHHTTC---HHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHcCC---HHHHHHHHHcCCC
Confidence 999999999999999 9999999999986
No 104
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.82 E-value=6.1e-21 Score=172.71 Aligned_cols=109 Identities=29% Similarity=0.338 Sum_probs=88.3
Q ss_pred CCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004266 89 MKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVN 168 (765)
Q Consensus 89 ~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN 168 (765)
.+|.+|.||||+||..|+.+++++|++.|++++.. +..|.||||+|+..|+.+++++||++ |++++
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-------------d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~ 69 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR-------------SKDGNTPLHLAAKNGHAEIVKLLLAK-GADVN 69 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCC-------------CSSSCCTTHHHHTTTCHHHHHHHTTT-TCCTT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-------------CCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCc
Confidence 46778888888888888888888888888888877 77888888888888888888888887 88888
Q ss_pred cccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHH
Q 004266 169 LTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPF 215 (765)
Q Consensus 169 ~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPL 215 (765)
.+ +..|.||||+|+..|+ .+++++|+++|+|+|.++..|.||-
T Consensus 70 ~~-d~~g~tpl~~A~~~~~---~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 70 AR-SKDGNTPEHLAKKNGH---HEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp CC-CTTCCCTTHHHHTTTC---HHHHHHHHTTSSSHHHHSCCCC---
T ss_pred cc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCcCCccccccc
Confidence 88 7888888888888888 8888888888888888888887763
No 105
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.82 E-value=3.5e-21 Score=189.38 Aligned_cols=120 Identities=23% Similarity=0.202 Sum_probs=110.7
Q ss_pred hccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CCCCC
Q 004266 135 KIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTD-AHGNR 213 (765)
Q Consensus 135 ~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D-~~G~T 213 (765)
.++.+|.||||+||..|+.++|++||+ |+++|.+ |..|+||||+|+..|+ .++|++|+++|+++|.+| ..|+|
T Consensus 39 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~~g~t 112 (183)
T 3deo_A 39 DVVSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGS---DKCVRLLAEAGADLDHRDMRGGLT 112 (183)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCSSSSCC
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCC
Confidence 346789999999999999999999999 8999999 9999999999999999 999999999999999999 89999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCCC
Q 004266 214 PFDVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPID 292 (765)
Q Consensus 214 PLh~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypvd 292 (765)
|||+|+.. +..+++++|+++|++++ .+|..|.||||+|++.++....
T Consensus 113 pL~~A~~~----~~~~~v~~Ll~~ga~~~----------------------------~~d~~g~tpl~~A~~~~~~~~~ 159 (183)
T 3deo_A 113 ALHMAAGY----VRPEVVEALVELGADIE----------------------------VEDERGLTALELAREILKTTPK 159 (183)
T ss_dssp HHHHHHHT----TCHHHHHHHHHHTCCTT----------------------------CCCTTSCCHHHHHHHHHHTCCC
T ss_pred HHHHHHhc----CcHHHHHHHHHcCCCCc----------------------------CCCCCCCCHHHHHHHhccCccc
Confidence 99999999 56779999999999999 7899999999999887666543
No 106
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.82 E-value=1.2e-20 Score=201.69 Aligned_cols=124 Identities=19% Similarity=0.016 Sum_probs=105.1
Q ss_pred hHHHhccCCCCcc----CCCCCCchHHHHHHHc---CCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHH
Q 004266 76 PSLQRNMSNPTET----MKSDHSFSRLLELAAD---NDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAA 148 (765)
Q Consensus 76 ~~Ll~~~~~l~~~----~~d~~G~TpLh~Aa~~---G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa 148 (765)
..++..+.++... ..+..|.||||+|+.. |++++|++||++|+++|.. |.+|+||||+|+
T Consensus 168 ~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~-------------d~~G~TpLh~A~ 234 (301)
T 2b0o_E 168 LEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-------------AADGNTALHYAA 234 (301)
T ss_dssp HHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC-------------CTTCCCHHHHHH
T ss_pred HHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC-------------CCCCCCHHHHHH
Confidence 3445555555211 1588999999999997 8999999999999999998 899999999999
Q ss_pred HcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCC
Q 004266 149 EYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPN 223 (765)
Q Consensus 149 ~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~ 223 (765)
..|+.++|++||++ |+|++.+ |.+|.||||+|+..|+ .+++++|+++|++ .|.||||+|+..|+
T Consensus 235 ~~g~~~~v~~Ll~~-gad~~~~-d~~G~TpL~~A~~~~~---~~iv~~Ll~~ga~------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 235 LYNQPDCLKLLLKG-RALVGTV-NEAGETALDIARKKHH---KECEELLEQAQAG------TFAFPLHVDYSWVI 298 (301)
T ss_dssp HTTCHHHHHHHHHT-TCCCSCC-CTTSCCHHHHHHHHTC---HHHHHHHHHHHHH------TTSSCCC-------
T ss_pred HcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHhcCC------CCCChhHHHHhcCC
Confidence 99999999999999 9999999 9999999999999999 9999999999987 58999999999865
No 107
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.81 E-value=2e-20 Score=169.28 Aligned_cols=105 Identities=35% Similarity=0.380 Sum_probs=97.6
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHH
Q 004266 136 IVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRPF 215 (765)
Q Consensus 136 id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TPL 215 (765)
.|.+|+||||+||..|+.+++++||++ |+++|.+ +..|.||||+|+..|+ .+++++|+++|++++.+|..|+|||
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~d~~g~tpl 79 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNAR-SKDGNTPLHLAAKNGH---AEIVKLLLAKGADVNARSKDGNTPE 79 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCC-CSSSCCTTHHHHTTTC---HHHHHHHTTTTCCTTCCCTTCCCTT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCc---HHHHHHHHHcCCCCcccCCCCCCHH
Confidence 378999999999999999999999999 9999999 9999999999999999 9999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHCCCCCCCcccccc
Q 004266 216 DVIVVHPNVPDSRVSLEDLLKNGGSVSFDELQVS 249 (765)
Q Consensus 216 h~Aa~~g~~~~~~~ive~LL~~GAdvn~~n~~~~ 249 (765)
|+|+.. +..+++++|+++|++++..+..+.
T Consensus 80 ~~A~~~----~~~~~~~~Ll~~ga~~n~~~~~~~ 109 (115)
T 2l6b_A 80 HLAKKN----GHHEIVKLLDAKGADVNARSWGSS 109 (115)
T ss_dssp HHHHTT----TCHHHHHHHHTTSSSHHHHSCCCC
T ss_pred HHHHHC----CCHHHHHHHHHcCCCCCcCCcccc
Confidence 999999 567799999999999995444433
No 108
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.80 E-value=3.1e-20 Score=191.72 Aligned_cols=97 Identities=27% Similarity=0.273 Sum_probs=91.8
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CCCCCHH
Q 004266 137 VLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTD-AHGNRPF 215 (765)
Q Consensus 137 d~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D-~~G~TPL 215 (765)
+.+|.||||+||..|+.++|++||+ |+++|.+ |..|+||||+|+..|+ .++|++||++|+++|.+| ..|+|||
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~g~t~L 115 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGS---DKCVRLLAEAGADLDHRDMRGGLTAL 115 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-CTTSCBHHHHHHHHTC---HHHHHHHHHTTCCTTCCCSSSCCCHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCcCCCCCCCCHH
Confidence 4578999999999999999999999 8999999 9999999999999999 999999999999999999 8899999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHCCCCCCC
Q 004266 216 DVIVVHPNVPDSRVSLEDLLKNGGSVSF 243 (765)
Q Consensus 216 h~Aa~~g~~~~~~~ive~LL~~GAdvn~ 243 (765)
|+|+.. +..+++++|+++|++++.
T Consensus 116 ~~A~~~----g~~~~v~~Ll~~ga~~~~ 139 (244)
T 3ui2_A 116 HMAAGY----VRPEVVEALVELGADIEV 139 (244)
T ss_dssp HHHHHT----TCHHHHHHHHHTTCCTTC
T ss_pred HHHHHc----CCHHHHHHHHHCCCCCCC
Confidence 999999 557799999999999994
No 109
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.79 E-value=4.2e-21 Score=212.09 Aligned_cols=129 Identities=16% Similarity=0.066 Sum_probs=105.8
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCC---c
Q 004266 91 SDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKAD---V 167 (765)
Q Consensus 91 d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAd---V 167 (765)
+.++.||||+||..|+.++|++|++.|+..... ..++..|.||||+||.+|+.++|++||++ |+| +
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~----------~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~~~ 157 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIV----------KVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMA 157 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC----------C--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHH
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHH----------HHhccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcccc
Confidence 445679999999999999999999988732111 00134578999999999999999999999 976 2
Q ss_pred ccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCC--CCCCCCCHHHHHH-hCCCCCCHHHHHHHHHHCCC
Q 004266 168 NLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNL--TDAHGNRPFDVIV-VHPNVPDSRVSLEDLLKNGG 239 (765)
Q Consensus 168 N~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~--~D~~G~TPLh~Aa-~~g~~~~~~~ive~LL~~GA 239 (765)
+.. +.+ .||||+|+..|+ .++|++|+++|++++. +|..|.||||+|+ .. +..+++++|+++|+
T Consensus 158 ~i~-~~~-~TpLh~Aa~~G~---~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~----G~~eiv~~Ll~~ga 223 (376)
T 2aja_A 158 MIQ-AEN-YHAFRLAAENGH---LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR----GHHNVINFLLDCPV 223 (376)
T ss_dssp HHS-HHH-HHHHHHHHHTTC---HHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT----CCHHHHHHHTTSHH
T ss_pred ccC-CCC-CCHHHHHHHCCC---HHHHHHHHHcCCccchhccCCCCCCHHHHHHHHC----CCHHHHHHHHhCCC
Confidence 332 223 899999999999 9999999999999988 9999999999999 99 55679999998663
No 110
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.78 E-value=4.6e-19 Score=195.18 Aligned_cols=164 Identities=16% Similarity=0.123 Sum_probs=109.6
Q ss_pred CCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCccCCC--CCCchHHHHHHHcCCHHHHHHHHH
Q 004266 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTETMKS--DHSFSRLLELAADNDVEGFKQCIC 115 (765)
Q Consensus 38 ~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~~~d--~~G~TpLh~Aa~~G~~e~Vk~LLe 115 (765)
.+.|+||.|+...+.+.+. ..|+..+.++ +..+ .+|.||||+||..|++++|++||+
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v-------------------~~LL~~Gadv--n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~ 256 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTM-------------------ADALAHGADV--NWVNGGQDNATPLIQATAANSLLACEFLLQ 256 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHH-------------------HHHHHTTCCT--TCCCTTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHccCCHHHH-------------------HHHHHcCCCC--CccccccCCCCHHHHHHHCCCHHHHHHHHH
Confidence 6689999994331433222 5566677777 5555 899999999999999999999999
Q ss_pred CCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHH
Q 004266 116 DTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVK 195 (765)
Q Consensus 116 ~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVk 195 (765)
+|+++|.. |..|+||||+|+..|+.++|++||++ |+|+|.+ |.+|.||||+|+..|+ .++|+
T Consensus 257 ~Gadvn~~-------------d~~G~TpLh~A~~~g~~~~v~~LL~~-Gad~~~~-d~~G~TpL~~A~~~g~---~~iv~ 318 (368)
T 3jue_A 257 NGANVNQA-------------DSAGRGPLHHATILGHTGLACLFLKR-GADLGAR-DSEGRDPLTIAMETAN---ADIVT 318 (368)
T ss_dssp TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHH
T ss_pred cCCCCCCC-------------CCCCCCHHHHHHHcCcHHHHHHHHHC-cCCCCCc-CCCCCCHHHHHHHCCC---HHHHH
Confidence 99999998 89999999999999999999999999 9999999 9999999999999999 99999
Q ss_pred HHHHCC---CCCCCCCCCCCCHHHHHHhCCCCCCHHHHHHHHHHCCCCCC
Q 004266 196 LLLFAG---ADSNLTDAHGNRPFDVIVVHPNVPDSRVSLEDLLKNGGSVS 242 (765)
Q Consensus 196 lLL~~G---Advn~~D~~G~TPLh~Aa~~g~~~~~~~ive~LL~~GAdvn 242 (765)
+|++++ ++....+..+.|+|+++..... ......+.|+.++.+++
T Consensus 319 lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~--~~~~~~ekl~r~~~~~~ 366 (368)
T 3jue_A 319 LLRLAKMREAEAAQGQAGDETYLDIFRDFSL--MASDDPEKLSRRSHDLH 366 (368)
T ss_dssp HHHHHHC-------------------------------------------
T ss_pred HHHHcCCCcccccccCCCCCCHHHHHHHHHh--hcCCCHHHHHhcCCCcC
Confidence 999875 4556677889999999877533 22445667777776665
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.77 E-value=9.9e-19 Score=199.28 Aligned_cols=139 Identities=18% Similarity=0.042 Sum_probs=108.9
Q ss_pred CCCcHHHHHHHhcCceeccCccccccccCCCCCCCCChhHHHhccCCCCcc----CCCCCCchHHHHHHH---cCCHHHH
Q 004266 38 NDRTLLILLFFQNYLIMCGGSEKLSSKALAPSASPPSKPSLQRNMSNPTET----MKSDHSFSRLLELAA---DNDVEGF 110 (765)
Q Consensus 38 ~G~TPLhlA~~~~~~i~c~~~e~lkl~~~~t~s~~~~~~~Ll~~~~~l~~~----~~d~~G~TpLh~Aa~---~G~~e~V 110 (765)
...+.||.|+..+. +... ..|+..+.++... ..+..|.||||+||. .|+.++|
T Consensus 131 ~~~~~L~~A~~~g~-~~~v-------------------~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v 190 (497)
T 3lvq_E 131 PEPQRLWTAICNRD-LLSV-------------------LEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 190 (497)
T ss_dssp -CHHHHHHHHHHTC-HHHH-------------------HHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHH
T ss_pred ccHHHHHHHHhccC-HHHH-------------------HHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHH
Confidence 34578999954444 3222 4566666666211 227899999999977 9999999
Q ss_pred HHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCH
Q 004266 111 KQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNA 190 (765)
Q Consensus 111 k~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~ 190 (765)
++||++|+++|.. |.+|+||||+||..|+.++|++||++ |||+|.+ |.+|.||||+|+..|+
T Consensus 191 ~~Ll~~ga~vn~~-------------d~~g~TpLh~A~~~g~~~~v~~Ll~~-ga~~~~~-d~~g~tpl~~A~~~~~--- 252 (497)
T 3lvq_E 191 DFIIQNGGHLDAK-------------AADGNTALHYAALYNQPDCLKLLLKG-RALVGTV-NEAGETALDIARKKHH--- 252 (497)
T ss_dssp HHHHHHSCCTTCC-------------CSSSCCHHHHHTTTTCHHHHHHHHHT-CCCCSCC-CTTCCCHHHHHHHTTC---
T ss_pred HHHHHcCCCCCcc-------------CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCC---
Confidence 9999999999999 89999999999999999999999999 9999999 9999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Q 004266 191 VDVVKLLLFAGADSNLTDAHGNRPFDVIVV 220 (765)
Q Consensus 191 ~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~ 220 (765)
.+++++|+++||+++. ||+|++..
T Consensus 253 ~~~~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 253 KECEELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp HHHHHHHHHTCC------------------
T ss_pred HHHHHHHHHhCCCCCC------Ccceeecc
Confidence 9999999999999987 56776654
No 112
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.75 E-value=1e-18 Score=184.68 Aligned_cols=167 Identities=14% Similarity=0.089 Sum_probs=130.3
Q ss_pred CCCCCCchHHHHHHHcCCHHHHHHHHHCCC-----CCcccc------hhhhhhchhhhcc-------CCCChHHHHHHHc
Q 004266 89 MKSDHSFSRLLELAADNDVEGFKQCICDTS-----AICEVG------LWYSFQRLSKKIV-------LQHRTPLMVAAEY 150 (765)
Q Consensus 89 ~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~ga-----dvn~~~------L~~a~~~g~~~id-------~~G~TPLH~Aa~~ 150 (765)
..|..+.+.|+.+...|+..+.+++...-. .++... -+.....-..... ....++|+.|+..
T Consensus 61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~ 140 (278)
T 1dcq_A 61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKT 140 (278)
T ss_dssp TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHT
T ss_pred ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhh
Confidence 357778899999999999877666543211 111100 0100000000001 1234789999999
Q ss_pred CCHHHHHHHHhcCCCCcc------cccCCCCCcHHHHHHhC---CCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhC
Q 004266 151 GSVDVVKLILSLTKADVN------LTCGLDKSTALHCAASG---GSVNAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVH 221 (765)
Q Consensus 151 G~~evVk~LL~~~GAdVN------~~~d~~G~TpLH~Aa~~---G~~~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~ 221 (765)
|+++.++.|++. |++++ .. +..|.||||+|+.. |+ .++|++||++|+|+|.+|..|+||||+|+..
T Consensus 141 ~d~~~~~~ll~~-g~~~~~~~~l~~~-~~~g~t~Lh~A~~~~~~~~---~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~ 215 (278)
T 1dcq_A 141 RDIFGLLQAYAD-GVDLTEKIPLANG-HEPDETALHLAVRSVDRTS---LHIVDFLVQNSGNLDKQTGKGSTALHYCCLT 215 (278)
T ss_dssp TCHHHHHHHHHT-TCCTTSBCCCSSC-SSTTCBHHHHHHHHCCTTT---HHHHHHHHHHCSCTTCCCTTCCCHHHHHHHT
T ss_pred cccHHHHHHHHh-hcchhhhcccccc-ccCCCCcchHHHHhcccch---HHHHHHHHHCCCCccccCCCCCCHHHHHHHc
Confidence 999999999999 99954 44 78899999999999 77 9999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCcccccccccccCCccccCCcCCCCCCcccCCCCCccccccccCCCcCCC
Q 004266 222 PNVPDSRVSLEDLLKNGGSVSFDELQVSSVDLRSSSSLSSSSDDSSLSSLTCKSDDVHAFVAPEKKEYPID 292 (765)
Q Consensus 222 g~~~~~~~ive~LL~~GAdvn~~n~~~~t~~~~~~s~l~~a~~~~~d~n~~dk~G~TPLHlAaekk~ypvd 292 (765)
+..+++++||++|++++ .+|.+|.||||+|++.++..+.
T Consensus 216 ----g~~~~v~~Ll~~gad~~----------------------------~~d~~g~tpL~~A~~~~~~~~v 254 (278)
T 1dcq_A 216 ----DNAECLKLLLRGKASIE----------------------------IANESGETPLDIAKRLKHEHCE 254 (278)
T ss_dssp ----TCHHHHHHHHHTTCCTT----------------------------CCCTTSCCHHHHHHHTTCHHHH
T ss_pred ----CCHHHHHHHHHcCCCCC----------------------------CccCCCCCHHHHHHHcCCHHHH
Confidence 55779999999999999 7899999999999999987763
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.71 E-value=1.8e-17 Score=149.71 Aligned_cols=91 Identities=35% Similarity=0.425 Sum_probs=84.2
Q ss_pred hccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCCH
Q 004266 135 KIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHCAASGGSVNAVDVVKLLLFAGADSNLTDAHGNRP 214 (765)
Q Consensus 135 ~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAdvn~~D~~G~TP 214 (765)
.++.+|.||||+||..|+.++|++||++ |+++|.+ |..|.||||+|+..|+ .+++++||++|++++.+|..|+||
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~-d~~g~tpLh~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tp 93 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAK-DKNGSTPLHLAARNGH---LEVVKLLLEAGADVXAQDKFGKTA 93 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccccCCCcH
Confidence 4478999999999999999999999999 9999999 9999999999999999 999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHH
Q 004266 215 FDVIVVHPNVPDSRVSLEDL 234 (765)
Q Consensus 215 Lh~Aa~~g~~~~~~~ive~L 234 (765)
||+|+.. +..+++++|
T Consensus 94 l~~A~~~----~~~~~~~~L 109 (110)
T 2zgd_A 94 FDISIDN----GNEDLAEIL 109 (110)
T ss_dssp HHHHHHH----TCHHHHHHH
T ss_pred HHHHHHc----CCHHHHHHh
Confidence 9999998 556688876
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.69 E-value=5.5e-17 Score=146.53 Aligned_cols=91 Identities=25% Similarity=0.308 Sum_probs=85.8
Q ss_pred CCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004266 89 MKSDHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVN 168 (765)
Q Consensus 89 ~~d~~G~TpLh~Aa~~G~~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evVk~LL~~~GAdVN 168 (765)
..+.+|.|+||+||..|+.++|++|++.|+++|.. +..|+||||+||..|+.++|++||++ |+++|
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~-------------d~~g~tpLh~A~~~~~~~~v~~Ll~~-ga~~~ 84 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAK-------------DKNGSTPLHLAARNGHLEVVKLLLEA-GADVX 84 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTT
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCcc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcc
Confidence 45889999999999999999999999999999998 89999999999999999999999999 99999
Q ss_pred cccCCCCCcHHHHHHhCCCCCHHHHHHHH
Q 004266 169 LTCGLDKSTALHCAASGGSVNAVDVVKLL 197 (765)
Q Consensus 169 ~~~d~~G~TpLH~Aa~~G~~~~~eiVklL 197 (765)
.+ |..|.||||+|+..|+ .+++++|
T Consensus 85 ~~-d~~g~tpl~~A~~~~~---~~~~~~L 109 (110)
T 2zgd_A 85 AQ-DKFGKTAFDISIDNGN---EDLAEIL 109 (110)
T ss_dssp CC-CTTSCCHHHHHHHHTC---HHHHHHH
T ss_pred cc-ccCCCcHHHHHHHcCC---HHHHHHh
Confidence 99 9999999999999999 9999987
No 115
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.02 E-value=8.5e-11 Score=100.38 Aligned_cols=61 Identities=34% Similarity=0.703 Sum_probs=30.3
Q ss_pred CCCCcCCCCCc-cCCcCCCCCCcccCcCcccccc---CccccccccCCCC---CCCCCCc-cCCCCCcCC
Q 004266 346 FHYSCMPCPDH-RKGACSRGDMCEYAHGIFESWL---HPAQYRTKLCKDG---TSCMRRV-CFFAHALDE 407 (765)
Q Consensus 346 ~~Y~~~~Cp~~-~~g~C~~gd~C~~aH~~~E~~~---hP~~ykt~~C~~~---~~C~~~~-C~faH~~~e 407 (765)
-.|++.+|+.| ++|.|++|+.|.|+|+..|++. || .|||++|+.| +.|+++. |.|+|+.+|
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~-~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHP-KYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccc-cccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 57899999999 5899999999999999999885 44 8999999864 6799975 999999876
No 116
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.64 E-value=3e-09 Score=89.32 Aligned_cols=62 Identities=24% Similarity=0.575 Sum_probs=56.4
Q ss_pred CcCCCCCccCCcCCCCC-CcccCcCccccccCccccccccCCCC--CCCCCCccCCCCCcCCccc
Q 004266 349 SCMPCPDHRKGACSRGD-MCEYAHGIFESWLHPAQYRTKLCKDG--TSCMRRVCFFAHALDELRP 410 (765)
Q Consensus 349 ~~~~Cp~~~~g~C~~gd-~C~~aH~~~E~~~hP~~ykt~~C~~~--~~C~~~~C~faH~~~e~r~ 410 (765)
+...|++|.+|.|.+|| .|.|+|...|.+.++..+++..|.+| +.|.++.|.|+|.+.+|+.
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQA 69 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCTTCCSBCCCHHHHC
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCCCcCeeCCHHHHhc
Confidence 34679999999999999 59999999999999999999999996 7899999999999988863
No 117
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.17 E-value=1.3e-06 Score=78.03 Aligned_cols=50 Identities=28% Similarity=0.530 Sum_probs=43.2
Q ss_pred CCCCcCCCCCccCCcCCCCCCcccCcCccccccCccccccccCCCC---CCCCCC-ccCCCCCcCC
Q 004266 346 FHYSCMPCPDHRKGACSRGDMCEYAHGIFESWLHPAQYRTKLCKDG---TSCMRR-VCFFAHALDE 407 (765)
Q Consensus 346 ~~Y~~~~Cp~~~~g~C~~gd~C~~aH~~~E~~~hP~~ykt~~C~~~---~~C~~~-~C~faH~~~e 407 (765)
..|+...|+.|.+|.|++||+|.|+|. +..|+.| +.|+++ .|.|+|....
T Consensus 9 ~~~k~~lC~~f~~G~C~~G~~C~f~H~------------~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 9 LPKKRELCKFYITGFCARAENCPYMHG------------DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp CSCCCSBCTTTTTTCCSCSTTCSSBSS------------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred CCCCCccCcccccCcCCCCCCCCCCCC------------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 347889999999999999999999999 6779875 789996 5999999654
No 118
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.9e-07 Score=83.38 Aligned_cols=62 Identities=26% Similarity=0.627 Sum_probs=55.9
Q ss_pred CcCCCCCccCCcCCCCC-CcccCcCccccccCccccccccCCCC--CCCCCCccCCCCCcCCccc
Q 004266 349 SCMPCPDHRKGACSRGD-MCEYAHGIFESWLHPAQYRTKLCKDG--TSCMRRVCFFAHALDELRP 410 (765)
Q Consensus 349 ~~~~Cp~~~~g~C~~gd-~C~~aH~~~E~~~hP~~ykt~~C~~~--~~C~~~~C~faH~~~e~r~ 410 (765)
+...|++|.+|.|.+|| .|.|+|...+.+..+...++..|.+| +.|.|+.|.|.|...+|+.
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~l~~ 83 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQA 83 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCTTCCSBCCCHHHHH
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCCCcCccCChHHHHH
Confidence 45789999999999999 79999999988877888999999998 8999999999999888754
No 119
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=1.3e-06 Score=74.45 Aligned_cols=59 Identities=24% Similarity=0.429 Sum_probs=48.7
Q ss_pred CCCCCCcCCCCCccCCcCCCCCCcccCcCccccccCccccccccCCCC---CCCCCCccCCCCCcCCcc
Q 004266 344 RKFHYSCMPCPDHRKGACSRGDMCEYAHGIFESWLHPAQYRTKLCKDG---TSCMRRVCFFAHALDELR 409 (765)
Q Consensus 344 ~~~~Y~~~~Cp~~~~g~C~~gd~C~~aH~~~E~~~hP~~ykt~~C~~~---~~C~~~~C~faH~~~e~r 409 (765)
....++...|+.|.+|.|.+||.|.|+|...+ -|+..|+.| +.|....|.|+|...+.+
T Consensus 4 ~~~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~~~~C~f~H~~~~~~ 65 (77)
T 2d9n_A 4 GSSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM-------TKMPECYFYSKFGECSNKECPFLHIDPESK 65 (77)
T ss_dssp CCSCCTTSBCHHHHTTCCSCTTSSSSBCSCCT-------TTSCBCHHHHHTCCCCCSSCSSBCCCTTSS
T ss_pred CCCCCcceeCHhHccCcCCCCCCCCCcccccc-------CcCCCCcccCCCCccCCCCeeccCCCcccc
Confidence 34567889999999999999999999999543 366789986 889977799999976544
No 120
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=97.88 E-value=2.8e-06 Score=71.56 Aligned_cols=57 Identities=25% Similarity=0.459 Sum_probs=46.1
Q ss_pred CCCCcCCCCCccCCcCCCCCCcccCcCccccccCccccccccCCCC---CCCCCCccCCCCCcCCcc
Q 004266 346 FHYSCMPCPDHRKGACSRGDMCEYAHGIFESWLHPAQYRTKLCKDG---TSCMRRVCFFAHALDELR 409 (765)
Q Consensus 346 ~~Y~~~~Cp~~~~g~C~~gd~C~~aH~~~E~~~hP~~ykt~~C~~~---~~C~~~~C~faH~~~e~r 409 (765)
..++...|+.|.+|.|.+||.|.|+|... .-++..|+.| +.|.+..|.|.|...+.+
T Consensus 12 ~~~k~~vCk~fl~G~C~~G~~C~fsH~~~-------~~~~~~C~~f~~~G~C~~~~C~y~H~~p~~k 71 (72)
T 2rhk_C 12 SGEKTVVCKHWLRGLCKKGDQCEFLHEYD-------MTKMSECYFYSKFGECSNKECPFLHIDPESK 71 (72)
T ss_dssp SCCCCSBCHHHHTTCCCCGGGSSSBCSCC-------TTSCCBCHHHHHHSCCSBTTCCSBCCCCC--
T ss_pred CCCcCeeCHHHhcCCCCCCCCCCCccccc-------cccCCcccccCCCCCCCCCCeeccCCCcccc
Confidence 34566899999999999999999999943 3477789984 789998899999976654
No 121
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=1.4e-06 Score=71.88 Aligned_cols=40 Identities=30% Similarity=0.547 Sum_probs=36.3
Q ss_pred CCCCCccCCcCCCCCCcccCcCcccccc---CccccccccCCC
Q 004266 351 MPCPDHRKGACSRGDMCEYAHGIFESWL---HPAQYRTKLCKD 390 (765)
Q Consensus 351 ~~Cp~~~~g~C~~gd~C~~aH~~~E~~~---hP~~ykt~~C~~ 390 (765)
.+|..|.+|.|++|+.|.||||..||.- .+..+|+++|+-
T Consensus 21 ~LC~~~~~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~A 63 (69)
T 2d9m_A 21 SICDRYMNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKA 63 (69)
T ss_dssp SBCHHHHHSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSC
T ss_pred ccCcccCcCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987 577888888875
No 122
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=97.79 E-value=9.5e-06 Score=68.85 Aligned_cols=62 Identities=26% Similarity=0.523 Sum_probs=18.7
Q ss_pred ccccccc----cccCCCCCCCCCCCCCCCcccCCCCCCCCCcCCCCCcc-CCcCCCCCCcccCcCccc
Q 004266 313 FKIRPCS----RAYSHDWTECPFAHPGENARRRDPRKFHYSCMPCPDHR-KGACSRGDMCEYAHGIFE 375 (765)
Q Consensus 313 fKv~~Cs----r~~shdw~eCpfaH~gE~arRR~p~~~~Y~~~~Cp~~~-~g~C~~gd~C~~aH~~~E 375 (765)
|+...|. .+.+.....|.|+|..+ ..|...+.-.|++.+|+.|. .|.|++|+.|.|+|+..|
T Consensus 10 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~-e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 10 YKTELCRTYSESGRCRYGAKCQFAHGLG-ELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp CCSCCCSGGGGTSCCTTTTTCSSCSSSC-CGGGTC---------------------------------
T ss_pred ccchhCHHhhhCCCcCCCCCccCCCCCh-hhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 4556665 24566667899999654 44443444578899999875 899999999999999776
No 123
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=97.34 E-value=4.3e-05 Score=66.00 Aligned_cols=61 Identities=28% Similarity=0.567 Sum_probs=47.5
Q ss_pred CcCCCCCccCCcCCCCC-CcccCcCccccccCccccccccCCCC--CCCCCCccCCCCCcCCcccc
Q 004266 349 SCMPCPDHRKGACSRGD-MCEYAHGIFESWLHPAQYRTKLCKDG--TSCMRRVCFFAHALDELRPL 411 (765)
Q Consensus 349 ~~~~Cp~~~~g~C~~gd-~C~~aH~~~E~~~hP~~ykt~~C~~~--~~C~~~~C~faH~~~e~r~~ 411 (765)
+...|++|.+|.|.+|| .|.|+|....+..- .-+...|.+| +.|.|+.|.|.|.+..+..-
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~--~~~~~vC~dflkG~C~r~~C~y~H~~~~l~~~ 71 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSKSCQVE--NGRVIACFDSLKGRCSRENCKYLHPPPHLKTQ 71 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEE--TTEEECCHHHHTTCCCCSSCSSCCCCHHHHHH
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCcccccc--CCceeehhHhhhccccCCCcceeCChHHHHHH
Confidence 44789999999999998 99999995532211 2345669986 78999999999998877543
No 124
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=5.6e-05 Score=62.39 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=25.5
Q ss_pred ccccccCCCC--CCCCCCc-cCCCCCcCCcccc
Q 004266 382 QYRTKLCKDG--TSCMRRV-CFFAHALDELRPL 411 (765)
Q Consensus 382 ~ykt~~C~~~--~~C~~~~-C~faH~~~e~r~~ 411 (765)
-.|+++|+.| +.|+++. |.|||+++|||..
T Consensus 17 ~~k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~~ 49 (69)
T 2d9m_A 17 TGYFSICDRYMNGTCPEGNSCKFAHGNAELHEW 49 (69)
T ss_dssp CSCCSBCHHHHHSCCSSCSSCSSBSSHHHHHHH
T ss_pred CCCcccCcccCcCCCCCCCccCCcCCHHHHhhH
Confidence 3477999986 6899975 9999999999873
No 125
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=96.93 E-value=0.00012 Score=64.01 Aligned_cols=59 Identities=29% Similarity=0.588 Sum_probs=46.3
Q ss_pred cCCCCCccCCcCCCCC-CcccCcCccccccCccccccccCCCC--CCCCCCccCCCCCcCCccc
Q 004266 350 CMPCPDHRKGACSRGD-MCEYAHGIFESWLHPAQYRTKLCKDG--TSCMRRVCFFAHALDELRP 410 (765)
Q Consensus 350 ~~~Cp~~~~g~C~~gd-~C~~aH~~~E~~~hP~~ykt~~C~~~--~~C~~~~C~faH~~~e~r~ 410 (765)
...|++|.+|.|.++| .|.|+|.......- .-+...|.+| +.|.|..|.|.|.+..|..
T Consensus 17 ~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~--~~~~~vC~dflkG~C~r~~Cky~H~~~hl~~ 78 (89)
T 2rpp_A 17 LEVCRQFQRGTCSRSDEECKFAHPPKSCQVE--NGRVIACFDSLKGRCSRENCKYLHPPTHLKT 78 (89)
T ss_dssp ECBCHHHHHTCCCCCTTTSSSBCCCSSSCCB--TTBEEBCHHHHHTCCCCTTCCSBCCCHHHHH
T ss_pred hhhchHHhcCCCCCCCCCCCCcCCCcccccc--CCceeeehhhhhCcCCCCCcceecCHHHHHH
Confidence 4679999999999999 99999985543221 2355669887 7899999999999876644
No 126
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=96.05 E-value=0.0038 Score=55.48 Aligned_cols=39 Identities=28% Similarity=0.736 Sum_probs=31.7
Q ss_pred ccCCCCCCCCCCCCCCCcccCCCCCCCCCcCCCCCc-cCCcCCCCCCcccCcCcc
Q 004266 321 AYSHDWTECPFAHPGENARRRDPRKFHYSCMPCPDH-RKGACSRGDMCEYAHGIF 374 (765)
Q Consensus 321 ~~shdw~eCpfaH~gE~arRR~p~~~~Y~~~~Cp~~-~~g~C~~gd~C~~aH~~~ 374 (765)
+.+.....|+|.|. ...|+.| ..|.|++|+.|.|+|...
T Consensus 22 G~C~~G~~C~f~H~---------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 22 GFCARAENCPYMHG---------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp TCCSCSTTCSSBSS---------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CcCCCCCCCCCCCC---------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 44555567999995 4689999 589999999999999843
No 127
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.98 E-value=0.0042 Score=52.68 Aligned_cols=54 Identities=24% Similarity=0.374 Sum_probs=39.4
Q ss_pred cccCCCCCCCCCCCCCCCcccCCCCCCCCCcCCCCCccC-CcCCCCCCcccCcCccccccCccccccccCCCC
Q 004266 320 RAYSHDWTECPFAHPGENARRRDPRKFHYSCMPCPDHRK-GACSRGDMCEYAHGIFESWLHPAQYRTKLCKDG 391 (765)
Q Consensus 320 r~~shdw~eCpfaH~gE~arRR~p~~~~Y~~~~Cp~~~~-g~C~~gd~C~~aH~~~E~~~hP~~ykt~~C~~~ 391 (765)
++.+.....|.|.|... .. +...|..|.+ |.|. ++.|.|.|... .-++..|.+|
T Consensus 18 ~G~C~~G~~C~fsH~~~-~~---------~~~~C~~f~~~G~C~-~~~C~f~H~~~-------~~~~~~C~~f 72 (77)
T 2d9n_A 18 RGLCKKGDQCEFLHEYD-MT---------KMPECYFYSKFGECS-NKECPFLHIDP-------ESKIKDCPWS 72 (77)
T ss_dssp TTCCSCTTSSSSBCSCC-TT---------TSCBCHHHHHTCCCC-CSSCSSBCCCT-------TSSCSSSSCC
T ss_pred cCcCCCCCCCCCccccc-cC---------cCCCCcccCCCCccC-CCCeeccCCCc-------cccCCCCccc
Confidence 35555556799999643 21 2347999987 9999 89999999943 3467778775
No 128
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=94.97 E-value=0.0093 Score=49.59 Aligned_cols=52 Identities=29% Similarity=0.493 Sum_probs=37.0
Q ss_pred ccCCCCC-CCCCCCCCCCcccCCCCCCCCCcCCCCCccCCcCCCCCCcccCcCcccc
Q 004266 321 AYSHDWT-ECPFAHPGENARRRDPRKFHYSCMPCPDHRKGACSRGDMCEYAHGIFES 376 (765)
Q Consensus 321 ~~shdw~-eCpfaH~gE~arRR~p~~~~Y~~~~Cp~~~~g~C~~gd~C~~aH~~~E~ 376 (765)
+.+.... +|+|+|+.+.. ..+...++...|..|.+|.|.++ .|.|.|...++
T Consensus 15 G~C~rg~~~C~f~H~~~~~---~~~~~~~~~~vC~~flkG~C~r~-~C~y~H~~~~L 67 (70)
T 3d2q_A 15 GNCNRGENDCRFAHPADST---MIDTNDNTVTVCMDYIKGRCSRE-KCKYFHPPAHL 67 (70)
T ss_dssp TCCSSCTTTCSSBCCCTTS---CCBTTTTEEEBCHHHHTTCCCCT-TCCSBCCCHHH
T ss_pred CCCCCCCCCCCCccCcccc---cccccCCcceeccccCcCCCCCC-CcCeeCCHHHH
Confidence 4444444 59999975321 11224456789999999999999 99999996655
No 129
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=92.33 E-value=0.016 Score=49.43 Aligned_cols=63 Identities=22% Similarity=0.563 Sum_probs=44.0
Q ss_pred ccccccCCCCCCCCCCCCCCCcccCCCCCCCCCcCCCCCccCCcCCCCCCcccCcCccccccCccccccccCCCCCCCCC
Q 004266 317 PCSRAYSHDWTECPFAHPGENARRRDPRKFHYSCMPCPDHRKGACSRGDMCEYAHGIFESWLHPAQYRTKLCKDGTSCMR 396 (765)
Q Consensus 317 ~Csr~~shdw~eCpfaH~gE~arRR~p~~~~Y~~~~Cp~~~~g~C~~gd~C~~aH~~~E~~~hP~~ykt~~C~~~~~C~~ 396 (765)
.|..+.......|+|.|+.. ...|+.+.. |++. .|.|+|- ....|+.+..|.+
T Consensus 11 ~CKf~~~Ctn~~C~f~Hp~~-------------~~~Cr~g~~--C~~~-~C~f~HP-----------~~~~Crf~~~C~n 63 (80)
T 2lhn_A 11 QCKFGTHCTNKRCKYRHARS-------------HIMCREGAN--CTRI-DCLFGHP-----------INEDCRFGVNCKN 63 (80)
Confidence 34333332336799999531 347888765 8874 5999985 1467999899999
Q ss_pred CccCCCCCcC
Q 004266 397 RVCFFAHALD 406 (765)
Q Consensus 397 ~~C~faH~~~ 406 (765)
..|.|.|-+.
T Consensus 64 ~~C~F~Hp~g 73 (80)
T 2lhn_A 64 IYCLFRHPPG 73 (80)
Confidence 9999999543
No 130
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.97 E-value=0.018 Score=51.12 Aligned_cols=52 Identities=29% Similarity=0.501 Sum_probs=36.6
Q ss_pred ccCCCCC-CCCCCCCCCCcccCCCCCCCCCcCCCCCccCCcCCCCCCcccCcCcccc
Q 004266 321 AYSHDWT-ECPFAHPGENARRRDPRKFHYSCMPCPDHRKGACSRGDMCEYAHGIFES 376 (765)
Q Consensus 321 ~~shdw~-eCpfaH~gE~arRR~p~~~~Y~~~~Cp~~~~g~C~~gd~C~~aH~~~E~ 376 (765)
+.+.... +|+|.|+.+... .+ ....+...|.+|.+|.|.++ .|.|.|...++
T Consensus 29 G~C~rgd~~C~FsH~~~~~~-~~--~~~~~~~vC~~flkG~C~r~-~C~y~H~~~~l 81 (98)
T 2e5s_A 29 GNCARGETDCRFAHPADSTM-ID--TSDNTVTVCMDYIKGRCMRE-KCKYFHPPAHL 81 (98)
T ss_dssp TCCSSHHHHCSSBCCSSCCS-CC--TTTCEEEBCHHHHHTCCCCT-TCCSBCCCHHH
T ss_pred CcCCCCCCCCCCcCCchhcc-cc--ccCCccccchhhccCCCCCC-CcCccCChHHH
Confidence 4444334 699999754221 11 23456688999999999999 99999996654
No 131
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=91.63 E-value=0.024 Score=48.36 Aligned_cols=42 Identities=29% Similarity=0.778 Sum_probs=34.4
Q ss_pred cCCCCCccCCcCCCCCCcccCcCccccccCccccccccCCCCCCCCCCccCCCCC
Q 004266 350 CMPCPDHRKGACSRGDMCEYAHGIFESWLHPAQYRTKLCKDGTSCMRRVCFFAHA 404 (765)
Q Consensus 350 ~~~Cp~~~~g~C~~gd~C~~aH~~~E~~~hP~~ykt~~C~~~~~C~~~~C~faH~ 404 (765)
-+.|+.+.. |++ +.|.|.|-.. ...|+.|.+|.+..|.|+|-
T Consensus 9 ~e~CKf~~~--Ctn-~~C~f~Hp~~----------~~~Cr~g~~C~~~~C~f~HP 50 (80)
T 2lhn_A 9 LEQCKFGTH--CTN-KRCKYRHARS----------HIMCREGANCTRIDCLFGHP 50 (80)
Confidence 367877776 999 7999999632 34799999999999999994
No 132
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=92.24 E-value=0.053 Score=45.27 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=33.9
Q ss_pred cccCCCCCCCCCCCCCCCcccCCCCCCCCCcCCCCCccC-CcCCCCCCcccCcCccc
Q 004266 320 RAYSHDWTECPFAHPGENARRRDPRKFHYSCMPCPDHRK-GACSRGDMCEYAHGIFE 375 (765)
Q Consensus 320 r~~shdw~eCpfaH~gE~arRR~p~~~~Y~~~~Cp~~~~-g~C~~gd~C~~aH~~~E 375 (765)
++.+.....|.|.|... .. +...|..|.+ |.|.+ +.|.|.|...+
T Consensus 24 ~G~C~~G~~C~fsH~~~-~~---------~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 24 RGLCKKGDQCEFLHEYD-MT---------KMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp TTCCCCGGGSSSBCSCC-TT---------SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred cCCCCCCCCCCCccccc-cc---------cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 45566656799999643 11 3457999998 99999 99999998654
No 133
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=90.51 E-value=0.05 Score=46.74 Aligned_cols=48 Identities=35% Similarity=0.582 Sum_probs=33.2
Q ss_pred ccCCCC-CCCCCCCCCCCcccCCCCCCCCCcCCCCCccCCcCCCCCCcccCcCcc
Q 004266 321 AYSHDW-TECPFAHPGENARRRDPRKFHYSCMPCPDHRKGACSRGDMCEYAHGIF 374 (765)
Q Consensus 321 ~~shdw-~eCpfaH~gE~arRR~p~~~~Y~~~~Cp~~~~g~C~~gd~C~~aH~~~ 374 (765)
+.+... .+|.|+|+.... ..-..+-..|-+|.+|.|.++ .|.|.|...
T Consensus 18 G~C~r~d~~C~f~H~~~~~-----~~~~~~~~vC~dflkG~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 18 GTCSRPDTECKFAHPSKSC-----QVENGRVIACFDSLKGRCSRE-NCKYLHPPP 66 (83)
T ss_dssp TCCCSCTTTCSSBCCCTTC-----CEETTEEECCHHHHTTCCCCS-SCSSCCCCH
T ss_pred CCCCCCCCCCCCcCCCccc-----cccCCceeehhHhhhccccCC-CcceeCChH
Confidence 444333 379999975421 111234578999999999998 899999933
No 134
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=89.52 E-value=0.067 Score=46.58 Aligned_cols=60 Identities=32% Similarity=0.578 Sum_probs=41.2
Q ss_pred ccCCCCC-CCCCCCCCCCcccCCCCCCCCCcCCCCCccCCcCCCCCCcccCcCccccccCccccccccCCCCCC
Q 004266 321 AYSHDWT-ECPFAHPGENARRRDPRKFHYSCMPCPDHRKGACSRGDMCEYAHGIFESWLHPAQYRTKLCKDGTS 393 (765)
Q Consensus 321 ~~shdw~-eCpfaH~gE~arRR~p~~~~Y~~~~Cp~~~~g~C~~gd~C~~aH~~~E~~~hP~~ykt~~C~~~~~ 393 (765)
+.+.... +|.|+|+.+...- ..-+-..|-+|.+|.|.++ .|.|.|. |...+++++-+|++
T Consensus 26 G~C~r~d~~CrfsH~~~~~~v-----~~~~~~vC~dflkG~C~r~-~Cky~H~-------~~hl~~~~~i~g~~ 86 (89)
T 2rpp_A 26 GTCSRSDEECKFAHPPKSCQV-----ENGRVIACFDSLKGRCSRE-NCKYLHP-------PTHLKTQLEINSGP 86 (89)
T ss_dssp TCCCCCTTTSSSBCCCSSSCC-----BTTBEEBCHHHHHTCCCCT-TCCSBCC-------CHHHHHHHHHCSCC
T ss_pred CCCCCCCCCCCCcCCCccccc-----cCCceeeehhhhhCcCCCC-CcceecC-------HHHHHHHHHhcCCC
Confidence 3443333 7999997653111 1224578999999999998 8999999 66667776666543
No 135
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=66.31 E-value=1.3 Score=45.34 Aligned_cols=24 Identities=42% Similarity=0.744 Sum_probs=21.4
Q ss_pred cCCCCCccCCcCCCCCCcccCcCc
Q 004266 350 CMPCPDHRKGACSRGDMCEYAHGI 373 (765)
Q Consensus 350 ~~~Cp~~~~g~C~~gd~C~~aH~~ 373 (765)
+..|..|.+|.|.+|+.|.|.|..
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHI 93 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSC
T ss_pred CeEcCccccCCCCCCCCCCccCCC
Confidence 458999999999999999999963
No 136
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=62.66 E-value=2.6 Score=32.29 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=13.5
Q ss_pred cccccCCCC---CCCCCCc-cCCCCCcC
Q 004266 383 YRTKLCKDG---TSCMRRV-CFFAHALD 406 (765)
Q Consensus 383 ykt~~C~~~---~~C~~~~-C~faH~~~ 406 (765)
++|.+|..| +-|+++. |.|.|+.+
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 455666653 4566653 66666543
No 137
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=55.28 E-value=3.8 Score=31.41 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=23.1
Q ss_pred CCcCCCCCcc-CCcCCCCCCcccCcCcc
Q 004266 348 YSCMPCPDHR-KGACSRGDMCEYAHGIF 374 (765)
Q Consensus 348 Y~~~~Cp~~~-~g~C~~gd~C~~aH~~~ 374 (765)
.....|..|. -|-|++|..|.+.|.+.
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 5677899996 68999999999999853
No 138
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=41.74 E-value=15 Score=36.91 Aligned_cols=45 Identities=24% Similarity=0.471 Sum_probs=33.5
Q ss_pred CCCcCCCCCccC-----CcCCCCCCcccCcCccccccCccccccccCCCC--CCCCCCccCCCCCcCC
Q 004266 347 HYSCMPCPDHRK-----GACSRGDMCEYAHGIFESWLHPAQYRTKLCKDG--TSCMRRVCFFAHALDE 407 (765)
Q Consensus 347 ~Y~~~~Cp~~~~-----g~C~~gd~C~~aH~~~E~~~hP~~ykt~~C~~~--~~C~~~~C~faH~~~e 407 (765)
..-++.|..| + |+|..++.|..-|= |+.| +.|++..|.-.|+..+
T Consensus 148 ~lLPeiC~~Y-kG~g~~g~C~~~~~C~kLHI---------------C~~Fl~G~C~f~~CkRsH~~~~ 199 (229)
T 3u9g_A 148 FFLPEICKSY-KGEGRKQTCGQPQPCERLHI---------------CEHFTRGNCSYLNCLRSHNLMD 199 (229)
T ss_dssp GGSCCBCTTC-CCSSSCCSCSSSSCCCSBCS---------------CHHHHTTCCCCSSCSSCCCTTS
T ss_pred ccCchHHHHh-CCCCCCCcCCCCCCCcceec---------------cchhhcCCcCCCCccCccCccC
Confidence 4468999999 6 48999999988775 5554 5677766777777544
No 139
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=40.07 E-value=7.1 Score=39.41 Aligned_cols=32 Identities=34% Similarity=0.724 Sum_probs=1.9
Q ss_pred ccCCCCCCCCCcCCCCCccCCcCCCCCCcccCcC
Q 004266 339 RRRDPRKFHYSCMPCPDHRKGACSRGDMCEYAHG 372 (765)
Q Consensus 339 rRR~p~~~~Y~~~~Cp~~~~g~C~~gd~C~~aH~ 372 (765)
.|..|..-.-+..+||+.++ |++|.+|.|-|.
T Consensus 181 L~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 212 (223)
T 3v33_A 181 LRKKPLTLEHRKQPCPYGRK--CTYGIKCRFFHP 212 (223)
T ss_dssp TBSCC-----------------------------
T ss_pred hccCCCCcccCCCCCCCCcc--cccCCcceecCC
Confidence 33334333335677888877 888888888764
No 140
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=38.59 E-value=19 Score=40.42 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=15.8
Q ss_pred HHHHHHcCCHHHHHHHH----HCCCCCccc
Q 004266 98 LLELAADNDVEGFKQCI----CDTSAICEV 123 (765)
Q Consensus 98 Lh~Aa~~G~~e~Vk~LL----e~gadvn~~ 123 (765)
|...|+.|+++-...|+ +.|..+|..
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~ 62 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQY 62 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHh
Confidence 44445678876554444 477777765
No 141
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=37.94 E-value=23 Score=39.69 Aligned_cols=131 Identities=17% Similarity=0.116 Sum_probs=83.1
Q ss_pred CCCCchHHHHHHHcCC--------------HHHHHHHHHCCCCCcccchhhhhhchhhhccCCCChHHHHHHHcCCHHHH
Q 004266 91 SDHSFSRLLELAADND--------------VEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVV 156 (765)
Q Consensus 91 d~~G~TpLh~Aa~~G~--------------~e~Vk~LLe~gadvn~~~L~~a~~~g~~~id~~G~TPLH~Aa~~G~~evV 156 (765)
|..-++.|..|+.... .++++.+.+.|..+|... -.+.|...+..|..+-+
T Consensus 60 d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t---------------yn~lI~~~~~~g~~~~A 124 (501)
T 4g26_A 60 SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT---------------FTNGARLAVAKDDPEMA 124 (501)
T ss_dssp CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH---------------HHHHHHHHHHHTCHHHH
T ss_pred CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH---------------HHHHHHHHHhcCCHHHH
Confidence 4444566666664321 356666777888877652 12445666778887655
Q ss_pred HHHH----hcCCCCcccccCCCCCcHHHHHHhCCCC-CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCCCCHHHHH
Q 004266 157 KLIL----SLTKADVNLTCGLDKSTALHCAASGGSV-NAVDVVKLLLFAGADSNLTDAHGNRPFDVIVVHPNVPDSRVSL 231 (765)
Q Consensus 157 k~LL----~~~GAdVN~~~d~~G~TpLH~Aa~~G~~-~~~eiVklLL~~GAdvn~~D~~G~TPLh~Aa~~g~~~~~~~iv 231 (765)
..|+ +. |..+|.. .-.+.|...+..|.. .+.++.+.+.+.|..+|.... .+-|...+..|+.+...+++
T Consensus 125 ~~l~~~M~~~-g~~Pd~~---tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty--~~Li~~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 125 FDMVKQMKAF-GIQPRLR---SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL--AALLKVSMDTKNADKVYKTL 198 (501)
T ss_dssp HHHHHHHHHT-TCCCCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCccc---eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHhhCCCHHHHHHHH
Confidence 5444 45 7777765 233556666777771 224455566678988876543 24566667788777778888
Q ss_pred HHHHHCCCCCC
Q 004266 232 EDLLKNGGSVS 242 (765)
Q Consensus 232 e~LL~~GAdvn 242 (765)
+.+.+.|..++
T Consensus 199 ~~Mr~~g~~ps 209 (501)
T 4g26_A 199 QRLRDLVRQVS 209 (501)
T ss_dssp HHHHHHTSSBC
T ss_pred HHHHHhCCCcC
Confidence 88888887776
No 142
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=25.70 E-value=15 Score=37.13 Aligned_cols=23 Identities=30% Similarity=0.667 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCCCc-cCCCCCcC
Q 004266 384 RTKLCKDGTSCMRRV-CFFAHALD 406 (765)
Q Consensus 384 kt~~C~~~~~C~~~~-C~faH~~~ 406 (765)
+.++|..+..|.|+. |-|+|-+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 191 RKQPCPYGRKCTYGIKCRFFHPER 214 (223)
T ss_dssp ------------------------
T ss_pred CCCCCCCCcccccCCcceecCCcc
Confidence 567799999999985 99999764
Done!